-- dump date 20140620_063843 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 458817000001 SEQ_END SEQ_END NC_010334.1 5226917 5226917 DR NC_010334.1; contig end 5226917..5226917 Shewanella halifaxensis HAW-EB4 YP_001672236.1 CDS dnaA NC_010334.1 81 1466 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 81..1466 Shewanella halifaxensis HAW-EB4 5906050 YP_001672237.1 CDS Shal_0002 NC_010334.1 1486 2586 D KEGG: slo:Shew_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1486..2586 Shewanella halifaxensis HAW-EB4 5906633 YP_001672238.1 CDS recF NC_010334.1 2806 3903 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2806..3903 Shewanella halifaxensis HAW-EB4 5906755 YP_001672239.1 CDS Shal_0004 NC_010334.1 3881 6322 D KEGG: shw:Sputw3181_0004 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3881..6322 Shewanella halifaxensis HAW-EB4 5906588 YP_001672240.1 CDS Shal_0005 NC_010334.1 6360 7463 D PFAM: Metal-dependent hydrolase HDOD; KEGG: shw:Sputw3181_0005 putative signal transduction protein; putative signal transduction protein 6360..7463 Shewanella halifaxensis HAW-EB4 5906589 YP_001672241.1 CDS glyS NC_010334.1 7531 9600 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(7531..9600) Shewanella halifaxensis HAW-EB4 5906173 YP_001672242.1 CDS glyQ NC_010334.1 9612 10517 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(9612..10517) Shewanella halifaxensis HAW-EB4 5906174 YP_001672243.1 CDS Shal_0008 NC_010334.1 10636 11196 D KEGG: slo:Shew_0011 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 10636..11196 Shewanella halifaxensis HAW-EB4 5905425 YP_001672244.1 CDS Shal_0009 NC_010334.1 11215 11880 R KEGG: slo:Shew_0012 hypothetical protein; hypothetical protein complement(11215..11880) Shewanella halifaxensis HAW-EB4 5905426 YP_001672245.1 CDS Shal_0010 NC_010334.1 12121 15315 R PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: slo:Shew_0013 amidohydrolase; amidohydrolase complement(12121..15315) Shewanella halifaxensis HAW-EB4 5904891 YP_001672246.1 CDS Shal_0011 NC_010334.1 15903 16085 R hypothetical protein complement(15903..16085) Shewanella halifaxensis HAW-EB4 5904892 YP_001672247.1 CDS Shal_0012 NC_010334.1 16120 16365 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(16120..16365) Shewanella halifaxensis HAW-EB4 5904501 YP_001672248.1 CDS Shal_0013 NC_010334.1 16512 16979 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vfi:VF1792 regulatory protein; ybaK/ebsC protein complement(16512..16979) Shewanella halifaxensis HAW-EB4 5904502 YP_001672249.1 CDS Shal_0014 NC_010334.1 17018 17479 R PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 complement(17018..17479) Shewanella halifaxensis HAW-EB4 5903921 YP_001672250.1 CDS fadA NC_010334.1 17651 18814 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(17651..18814) Shewanella halifaxensis HAW-EB4 5903922 YP_001672251.1 CDS fadB NC_010334.1 18833 20986 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(18833..20986) Shewanella halifaxensis HAW-EB4 5904871 YP_001672252.1 CDS Shal_0017 NC_010334.1 21349 22671 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 21349..22671 Shewanella halifaxensis HAW-EB4 5904872 YP_001672253.1 CDS Shal_0018 NC_010334.1 22740 23354 D PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: slo:Shew_0021 protein of unknown function UPF0029; hypothetical protein 22740..23354 Shewanella halifaxensis HAW-EB4 5905067 YP_001672254.1 CDS Shal_0019 NC_010334.1 23478 24935 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: slo:Shew_0022 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 23478..24935 Shewanella halifaxensis HAW-EB4 5905068 YP_001672255.1 CDS Shal_0020 NC_010334.1 25075 25602 D KEGG: slo:Shew_0023 protoporphyrinogen oxidase; protoporphyrinogen oxidase 25075..25602 Shewanella halifaxensis HAW-EB4 5905903 YP_001672256.1 CDS Shal_0021 NC_010334.1 25667 25972 R PFAM: regulatory protein ArsR; KEGG: shw:Sputw3181_0018 regulatory protein, ArsR; ArsR family transcriptional regulator complement(25667..25972) Shewanella halifaxensis HAW-EB4 5905904 YP_001672257.1 CDS Shal_0022 NC_010334.1 26185 26724 D KEGG: slo:Shew_0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 26185..26724 Shewanella halifaxensis HAW-EB4 5904106 YP_001672258.1 CDS Shal_0023 NC_010334.1 26783 28225 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: slo:Shew_3740 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(26783..28225) Shewanella halifaxensis HAW-EB4 5904107 YP_001672259.1 CDS trkA NC_010334.1 28246 29655 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(28246..29655) Shewanella halifaxensis HAW-EB4 5905240 YP_001672260.1 CDS Shal_0025 NC_010334.1 29663 30943 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: slo:Shew_3738 sun protein; sun protein complement(29663..30943) Shewanella halifaxensis HAW-EB4 5905241 YP_001672261.1 CDS Shal_0026 NC_010334.1 30950 31915 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shm:Shewmr7_0026 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(30950..31915) Shewanella halifaxensis HAW-EB4 5904521 YP_001672262.1 CDS def NC_010334.1 31920 32519 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(31920..32519) Shewanella halifaxensis HAW-EB4 5904522 YP_001672263.1 CDS Shal_0028 NC_010334.1 32569 33669 D PFAM: Peptidoglycan-binding LysM; KEGG: slo:Shew_3735 peptidoglycan-binding LysM; peptidoglycan-binding LysM 32569..33669 Shewanella halifaxensis HAW-EB4 5904571 YP_001672264.1 CDS Shal_0029 NC_010334.1 33823 34842 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: slo:Shew_3734 DNA protecting protein DprA; DNA protecting protein DprA 33823..34842 Shewanella halifaxensis HAW-EB4 5904572 YP_001672265.1 CDS Shal_0030 NC_010334.1 34845 35318 D PFAM: protein of unknown function DUF494; KEGG: shw:Sputw3181_0027 protein of unknown function DUF494; hypothetical protein 34845..35318 Shewanella halifaxensis HAW-EB4 5905346 YP_001672266.1 CDS Shal_0031 NC_010334.1 35594 37366 R PFAM: Peptidase M9A collagenase domain protein; KEGG: slo:Shew_3732 microbial collagenase; collagenase complement(35594..37366) Shewanella halifaxensis HAW-EB4 5905347 YP_001672267.1 CDS Shal_0032 NC_010334.1 37503 38066 D PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: sbm:Shew185_0031 DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 37503..38066 Shewanella halifaxensis HAW-EB4 5905099 YP_001672268.1 CDS Shal_0033 NC_010334.1 38154 38717 D PFAM: SUA5/yciO/yrdC domain; KEGG: sbm:Shew185_0032 SUA5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 38154..38717 Shewanella halifaxensis HAW-EB4 5905100 YP_001672269.1 CDS Shal_0034 NC_010334.1 38739 39653 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 38739..39653 Shewanella halifaxensis HAW-EB4 5904611 YP_001672270.1 CDS Shal_0035 NC_010334.1 39744 40583 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: slo:Shew_3727 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 39744..40583 Shewanella halifaxensis HAW-EB4 5904612 YP_001672271.1 CDS Shal_0036 NC_010334.1 40614 40892 D PFAM: protein of unknown function DUF1488; KEGG: shn:Shewana3_0044 protein of unknown function DUF1488; hypothetical protein 40614..40892 Shewanella halifaxensis HAW-EB4 5905272 YP_001672272.1 CDS Shal_0037 NC_010334.1 40938 41495 R KEGG: sbm:Shew185_0037 carbonic anhydrase, family 3; carbonic anhydrase complement(40938..41495) Shewanella halifaxensis HAW-EB4 5905273 YP_001672273.1 CDS Shal_0038 NC_010334.1 47722 47976 D PFAM: protein of unknown function UPF0153; KEGG: slo:Shew_3811 protein of unknown function UPF0153; hypothetical protein 47722..47976 Shewanella halifaxensis HAW-EB4 5904381 YP_001672274.1 CDS Shal_0039 NC_010334.1 48028 48477 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: shn:Shewana3_0047 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 48028..48477 Shewanella halifaxensis HAW-EB4 5904308 YP_001672275.1 CDS Shal_0040 NC_010334.1 48463 49155 R PFAM: protein of unknown function DUF610 YibQ; KEGG: sbl:Sbal_4335 protein of unknown function DUF610, YibQ; hypothetical protein complement(48463..49155) Shewanella halifaxensis HAW-EB4 5904777 YP_001672276.1 CDS Shal_0041 NC_010334.1 49225 50430 R KEGG: slo:Shew_3808 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; carboxyl-terminal protease complement(49225..50430) Shewanella halifaxensis HAW-EB4 5904778 YP_001672277.1 CDS Shal_0042 NC_010334.1 50464 51597 R PFAM: peptidase M23B; KEGG: slo:Shew_3807 peptidase M23B; peptidase M23B complement(50464..51597) Shewanella halifaxensis HAW-EB4 5904733 YP_001672278.1 CDS Shal_0043 NC_010334.1 51870 53414 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(51870..53414) Shewanella halifaxensis HAW-EB4 5904734 YP_001672279.1 CDS Shal_0044 NC_010334.1 53653 54087 D PFAM: Rhodanese domain protein; KEGG: slo:Shew_3805 rhodanese domain protein; rhodanese domain-containing protein 53653..54087 Shewanella halifaxensis HAW-EB4 5904919 YP_001672280.1 CDS Shal_0045 NC_010334.1 54318 54803 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 54318..54803 Shewanella halifaxensis HAW-EB4 5904920 YP_001672281.1 CDS gpsA NC_010334.1 54808 55827 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 54808..55827 Shewanella halifaxensis HAW-EB4 5904349 YP_001672282.1 CDS Shal_0047 NC_010334.1 56080 57264 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_3802 HI0933 family protein; hypothetical protein 56080..57264 Shewanella halifaxensis HAW-EB4 5904350 YP_001672283.1 CDS Shal_0048 NC_010334.1 57512 58129 D KEGG: slo:Shew_3799 hypothetical protein; hypothetical protein 57512..58129 Shewanella halifaxensis HAW-EB4 5904964 YP_001672284.1 CDS Shal_0049 NC_010334.1 58290 59240 D KEGG: cps:CPS_1250 conserved hypothetical protein; hypothetical protein 58290..59240 Shewanella halifaxensis HAW-EB4 5904965 YP_001672285.1 CDS Shal_0050 NC_010334.1 59237 60160 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1249 ABC transporter, ATP-binding protein; ABC transporter-like protein 59237..60160 Shewanella halifaxensis HAW-EB4 5905327 YP_001672286.1 CDS Shal_0051 NC_010334.1 60157 61302 D PFAM: ABC-2 type transporter; KEGG: cps:CPS_1248 ABC transporter, permease protein; ABC-2 type transporter 60157..61302 Shewanella halifaxensis HAW-EB4 5905328 YP_001672287.1 CDS Shal_0052 NC_010334.1 61627 62097 D PFAM: NLP/P60 protein; KEGG: sbm:Shew185_0058 NLP/P60 protein; NLP/P60 protein 61627..62097 Shewanella halifaxensis HAW-EB4 5905157 YP_001672288.1 CDS Shal_0053 NC_010334.1 62177 63109 R KEGG: vpa:VP1357 hypothetical protein; hypothetical protein complement(62177..63109) Shewanella halifaxensis HAW-EB4 5905158 YP_001672289.1 CDS Shal_0054 NC_010334.1 63133 64458 R KEGG: bth:BT_1162 hypothetical protein; hypothetical protein complement(63133..64458) Shewanella halifaxensis HAW-EB4 5904557 YP_001672290.1 CDS mogA NC_010334.1 64809 65342 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 64809..65342 Shewanella halifaxensis HAW-EB4 5904558 YP_001672291.1 CDS Shal_0056 NC_010334.1 65381 65491 D KEGG: saz:Sama_0068 molybdenum cofactor biosynthesis protein Mog; hypothetical protein 65381..65491 Shewanella halifaxensis HAW-EB4 5905211 YP_001672292.1 CDS Shal_0057 NC_010334.1 65530 65640 D KEGG: saz:Sama_0068 molybdenum cofactor biosynthesis protein Mog; hypothetical protein 65530..65640 Shewanella halifaxensis HAW-EB4 5905212 YP_001672293.1 CDS Shal_0058 NC_010334.1 65679 65885 D KEGG: saz:Sama_0068 molybdenum cofactor biosynthesis protein Mog; hypothetical protein 65679..65885 Shewanella halifaxensis HAW-EB4 5903301 YP_001672294.1 CDS Shal_0059 NC_010334.1 66300 67958 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sde:Sde_0081 putative methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 66300..67958 Shewanella halifaxensis HAW-EB4 5903302 YP_001672295.1 CDS Shal_0060 NC_010334.1 68037 69173 R KEGG: slo:Shew_3782 ABC-2 type transporter; ABC-2 type transporter complement(68037..69173) Shewanella halifaxensis HAW-EB4 5904844 YP_001672296.1 CDS Shal_0061 NC_010334.1 69199 69933 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3781 ABC transporter-related protein; ABC transporter-like protein complement(69199..69933) Shewanella halifaxensis HAW-EB4 5904845 YP_001672297.1 CDS Shal_0062 NC_010334.1 69944 71527 R PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: slo:Shew_3780 TAP domain protein; TAP domain-containing protein complement(69944..71527) Shewanella halifaxensis HAW-EB4 5904883 YP_001672298.1 CDS Shal_0063 NC_010334.1 72038 73834 D PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_3776 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 72038..73834 Shewanella halifaxensis HAW-EB4 5904884 YP_001672299.1 CDS Shal_0064 NC_010334.1 74073 74477 D PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_3970 thioesterase superfamily protein; thioesterase superfamily protein 74073..74477 Shewanella halifaxensis HAW-EB4 5904693 YP_001672300.1 CDS Shal_0065 NC_010334.1 74528 74803 R KEGG: son:SO_0079 hypothetical protein; hypothetical protein complement(74528..74803) Shewanella halifaxensis HAW-EB4 5904694 YP_001672301.1 CDS Shal_0066 NC_010334.1 74882 75310 R PFAM: thioesterase superfamily protein; KEGG: sdn:Sden_0074 thioesterase superfamily; thioesterase superfamily protein complement(74882..75310) Shewanella halifaxensis HAW-EB4 5904613 YP_001672302.1 CDS Shal_0067 NC_010334.1 75502 76179 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: spc:Sputcn32_0069 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(75502..76179) Shewanella halifaxensis HAW-EB4 5904614 YP_001672303.1 CDS Shal_0068 NC_010334.1 76436 77485 R PFAM: Lytic transglycosylase catalytic; KEGG: ilo:IL0198 membrane-bound lytic murein transglycosylase C; lytic transglycosylase complement(76436..77485) Shewanella halifaxensis HAW-EB4 5904915 YP_001672304.1 CDS Shal_0069 NC_010334.1 78106 79353 D SMART: AAA ATPase; KEGG: vpa:VPA0800 hypothetical protein; ATPase AAA 78106..79353 Shewanella halifaxensis HAW-EB4 5904916 YP_001672305.1 CDS Shal_0070 NC_010334.1 79346 80005 D KEGG: vpa:VPA0799 hypothetical protein; hypothetical protein 79346..80005 Shewanella halifaxensis HAW-EB4 5905445 YP_001672306.1 CDS Shal_0071 NC_010334.1 80432 81658 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(80432..81658) Shewanella halifaxensis HAW-EB4 5905446 YP_001672307.1 CDS Shal_0072 NC_010334.1 81834 82538 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: slo:Shew_3758 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 81834..82538 Shewanella halifaxensis HAW-EB4 5906260 YP_001672308.1 CDS Shal_0073 NC_010334.1 82702 84366 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 82702..84366 Shewanella halifaxensis HAW-EB4 5906261 YP_001672309.1 CDS Shal_0074 NC_010334.1 84387 85919 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 84387..85919 Shewanella halifaxensis HAW-EB4 5904565 YP_001672310.1 CDS Shal_0075 NC_010334.1 85995 86402 R PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_1379 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(85995..86402) Shewanella halifaxensis HAW-EB4 5904566 YP_001672311.1 CDS Shal_0076 NC_010334.1 86747 87673 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sal:Sala_2416 transcriptional regulator, LysR family; LysR family transcriptional regulator 86747..87673 Shewanella halifaxensis HAW-EB4 5905323 YP_001672312.1 CDS Shal_0077 NC_010334.1 87756 88142 R TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vha:VIBHAR_03649 hypothetical protein; putative endoribonuclease L-PSP complement(87756..88142) Shewanella halifaxensis HAW-EB4 5905324 YP_001672313.1 CDS Shal_0078 NC_010334.1 88218 89630 R PFAM: Na+/H+ antiporter NhaC; KEGG: dde:Dde_2580 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC complement(88218..89630) Shewanella halifaxensis HAW-EB4 5905193 YP_001672314.1 CDS Shal_0079 NC_010334.1 89748 90767 R KEGG: bbr:BB4545 D-cysteine desulfhydrase; 1-aminocyclopropane-1-carboxylate deaminase complement(89748..90767) Shewanella halifaxensis HAW-EB4 5905194 YP_001672315.1 CDS Shal_0080 NC_010334.1 90860 91600 R PFAM: protein of unknown function DUF81; KEGG: btl:BALH_1459 membrane protein; hypothetical protein complement(90860..91600) Shewanella halifaxensis HAW-EB4 5905319 YP_001672316.1 CDS Shal_0081 NC_010334.1 91842 92510 R KEGG: slo:Shew_3754 hypothetical protein; hypothetical protein complement(91842..92510) Shewanella halifaxensis HAW-EB4 5905320 YP_001672317.1 CDS Shal_0082 NC_010334.1 92692 93087 R KEGG: vfi:VF1351 hypothetical protein; hypothetical protein complement(92692..93087) Shewanella halifaxensis HAW-EB4 5905478 YP_001672318.1 CDS Shal_0083 NC_010334.1 93176 94327 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO_A0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(93176..94327) Shewanella halifaxensis HAW-EB4 5905479 YP_001672319.1 CDS Shal_0084 NC_010334.1 94707 95243 R KEGG: slo:Shew_3753 hypothetical protein; hypothetical protein complement(94707..95243) Shewanella halifaxensis HAW-EB4 5905676 YP_001672320.1 CDS Shal_0085 NC_010334.1 95438 96691 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_3752 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 95438..96691 Shewanella halifaxensis HAW-EB4 5905677 YP_001672321.1 CDS Shal_0086 NC_010334.1 96832 97458 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_3751 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(96832..97458) Shewanella halifaxensis HAW-EB4 5905652 YP_001672322.1 CDS Shal_0087 NC_010334.1 97559 98110 R PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_3750 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(97559..98110) Shewanella halifaxensis HAW-EB4 5905653 YP_001672323.1 CDS Shal_0088 NC_010334.1 98253 98675 D KEGG: slo:Shew_3749 hypothetical protein; hypothetical protein 98253..98675 Shewanella halifaxensis HAW-EB4 5906860 YP_001672324.1 CDS Shal_0089 NC_010334.1 98905 99672 R PFAM: protein of unknown function DUF833; KEGG: slo:Shew_3748 protein of unknown function DUF833; hypothetical protein complement(98905..99672) Shewanella halifaxensis HAW-EB4 5906861 YP_001672325.1 CDS Shal_0090 NC_010334.1 99753 101381 R KEGG: slo:Shew_3747 hypothetical protein; hypothetical protein complement(99753..101381) Shewanella halifaxensis HAW-EB4 5906649 YP_001672326.1 CDS Shal_0091 NC_010334.1 101599 102195 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: slo:Shew_3746 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 101599..102195 Shewanella halifaxensis HAW-EB4 5906650 YP_001672327.1 CDS Shal_0092 NC_010334.1 102372 104537 D PFAM: glycoside hydrolase family 37; KEGG: slo:Shew_3745 glycoside hydrolase, family 37; glycoside hydrolase family protein 102372..104537 Shewanella halifaxensis HAW-EB4 5906373 YP_001672328.1 CDS Shal_0093 NC_010334.1 104681 104983 D KEGG: sdn:Sden_0093 hypothetical protein; hypothetical protein 104681..104983 Shewanella halifaxensis HAW-EB4 5903978 YP_001672329.1 CDS Shal_0094 NC_010334.1 104985 107789 D PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: slo:Shew_3744 peptidase M6, immune inhibitor A; peptidase M6 immune inhibitor A 104985..107789 Shewanella halifaxensis HAW-EB4 5903979 YP_001672330.1 CDS Shal_0095 NC_010334.1 107848 108411 R PFAM: Chorismate lyase; KEGG: sbl:Sbal_4229 chorismate lyase; chorismate lyase complement(107848..108411) Shewanella halifaxensis HAW-EB4 5904192 YP_001672331.1 CDS Shal_0096 NC_010334.1 108565 108966 D PFAM: flagellar basal body-associated protein FliL; KEGG: sfr:Sfri_0049 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 108565..108966 Shewanella halifaxensis HAW-EB4 5904193 YP_001672332.1 CDS Shal_0097 NC_010334.1 109024 110166 D PFAM: protein of unknown function DUF890; KEGG: slo:Shew_3741 protein of unknown function DUF890; putative SAM-dependent methyltransferase 109024..110166 Shewanella halifaxensis HAW-EB4 5903864 YP_001672333.1 CDS Shal_0098 NC_010334.1 110298 111203 R KEGG: slo:Shew_0052 DNA binding domain, excisionase family; DNA-binding domain-containing protein complement(110298..111203) Shewanella halifaxensis HAW-EB4 5903860 YP_001672334.1 CDS Shal_0099 NC_010334.1 111251 112093 R PFAM: formate dehydrogenase subunit FdhD; KEGG: slo:Shew_0053 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD complement(111251..112093) Shewanella halifaxensis HAW-EB4 5903861 YP_001672335.1 CDS Shal_0100 NC_010334.1 112377 112844 D KEGG: slo:Shew_0054 hypothetical protein; hypothetical protein 112377..112844 Shewanella halifaxensis HAW-EB4 5903573 YP_001672336.1 CDS Shal_0101 NC_010334.1 112841 113503 D KEGG: sbl:Sbal_4132 hypothetical protein; hypothetical protein 112841..113503 Shewanella halifaxensis HAW-EB4 5903574 YP_001672337.1 CDS Shal_0102 NC_010334.1 113653 115332 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 113653..115332 Shewanella halifaxensis HAW-EB4 5903759 YP_001672338.1 CDS Shal_0103 NC_010334.1 115343 116017 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: slo:Shew_0057 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 115343..116017 Shewanella halifaxensis HAW-EB4 5903508 YP_001672339.1 CDS Shal_0104 NC_010334.1 116192 116389 D TIGRFAM: Formate dehydrogenase region TAT target; KEGG: shw:Sputw3181_3870 hypothetical protein; formate dehydrogenase region TAT target 116192..116389 Shewanella halifaxensis HAW-EB4 5903509 YP_001672340.1 CDS Shal_0105 NC_010334.1 116409 119258 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0059 molybdopterin oxidoreductase; molybdopterin oxidoreductase 116409..119258 Shewanella halifaxensis HAW-EB4 5903721 YP_001672341.1 CDS Shal_0106 NC_010334.1 119285 119872 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3872 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 119285..119872 Shewanella halifaxensis HAW-EB4 5903722 YP_001672342.1 CDS Shal_0107 NC_010334.1 119926 120933 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: slo:Shew_0061 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 119926..120933 Shewanella halifaxensis HAW-EB4 5904202 YP_001672343.1 CDS Shal_0108 NC_010334.1 121639 121836 D TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0062 hypothetical protein; formate dehydrogenase region TAT target 121639..121836 Shewanella halifaxensis HAW-EB4 5904917 YP_001672344.1 CDS Shal_0109 NC_010334.1 121855 124710 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0063 molybdopterin oxidoreductase; molybdopterin oxidoreductase 121855..124710 Shewanella halifaxensis HAW-EB4 5904918 YP_001672345.1 CDS Shal_0110 NC_010334.1 124740 125309 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0064 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 124740..125309 Shewanella halifaxensis HAW-EB4 5905355 YP_001672346.1 CDS Shal_0111 NC_010334.1 125385 126365 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbm:Shew185_4112 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 125385..126365 Shewanella halifaxensis HAW-EB4 5905356 YP_001672347.1 CDS Shal_0112 NC_010334.1 127390 127587 D TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0062 hypothetical protein; formate dehydrogenase region TAT target 127390..127587 Shewanella halifaxensis HAW-EB4 5905816 YP_001672348.1 CDS Shal_0113 NC_010334.1 127606 130479 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: saz:Sama_3609 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase 127606..130479 Shewanella halifaxensis HAW-EB4 5905950 YP_001672349.1 CDS Shal_0114 NC_010334.1 130509 131078 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saz:Sama_3608 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 130509..131078 Shewanella halifaxensis HAW-EB4 5905951 YP_001672350.1 CDS Shal_0115 NC_010334.1 131154 132137 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbm:Shew185_4112 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 131154..132137 Shewanella halifaxensis HAW-EB4 5906020 YP_001672351.1 CDS Shal_0116 NC_010334.1 132396 133724 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 132396..133724 Shewanella halifaxensis HAW-EB4 5906021 YP_001672352.1 CDS Shal_0117 NC_010334.1 133910 134752 D PFAM: PfkB domain protein; KEGG: sbl:Sbal_0278 PfkB domain protein; ribokinase-like domain-containing protein 133910..134752 Shewanella halifaxensis HAW-EB4 5906141 YP_001672353.1 CDS Shal_0118 NC_010334.1 134992 136449 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_0268 diguanylate cyclase; diguanylate cyclase 134992..136449 Shewanella halifaxensis HAW-EB4 5903906 YP_001672354.1 CDS Shal_0119 NC_010334.1 136560 137258 D PFAM: MOSC domain containing protein; KEGG: shw:Sputw3181_0239 MOSC domain containing protein; MOSC domain-containing protein 136560..137258 Shewanella halifaxensis HAW-EB4 5903907 YP_001672355.1 CDS Shal_0120 NC_010334.1 137290 137637 D KEGG: slo:Shew_0084 hypothetical protein; hypothetical protein 137290..137637 Shewanella halifaxensis HAW-EB4 5903777 YP_001672356.1 CDS Shal_0121 NC_010334.1 137736 139385 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: slo:Shew_0086 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(137736..139385) Shewanella halifaxensis HAW-EB4 5903778 YP_001672357.1 CDS moaA NC_010334.1 139766 140746 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 139766..140746 Shewanella halifaxensis HAW-EB4 5904046 YP_001672358.1 CDS Shal_0123 NC_010334.1 140829 141353 D TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: slo:Shew_0088 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 140829..141353 Shewanella halifaxensis HAW-EB4 5904077 YP_001672359.1 CDS moaC NC_010334.1 141427 141903 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 141427..141903 Shewanella halifaxensis HAW-EB4 5904078 YP_001672360.1 CDS Shal_0125 NC_010334.1 141912 142163 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: shn:Shewana3_0276 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 141912..142163 Shewanella halifaxensis HAW-EB4 5904091 YP_001672361.1 CDS Shal_0126 NC_010334.1 142165 142617 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein 142165..142617 Shewanella halifaxensis HAW-EB4 5904092 YP_001672362.1 CDS Shal_0127 NC_010334.1 142648 143427 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 142648..143427 Shewanella halifaxensis HAW-EB4 5904151 YP_001672363.1 CDS Shal_0128 NC_010334.1 143427 144107 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0093 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 143427..144107 Shewanella halifaxensis HAW-EB4 5904152 YP_001672364.1 CDS Shal_0129 NC_010334.1 144088 145203 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0094 ABC transporter-related protein; ABC transporter-like protein 144088..145203 Shewanella halifaxensis HAW-EB4 5904153 YP_001672365.1 CDS Shal_0130 NC_010334.1 145325 145675 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_0095 conserved hypothetical protein 156; hypothetical protein 145325..145675 Shewanella halifaxensis HAW-EB4 5905195 YP_001672366.1 CDS Shal_0131 NC_010334.1 145720 146241 D KEGG: shw:Sputw3181_0250 hypothetical protein; hypothetical protein 145720..146241 Shewanella halifaxensis HAW-EB4 5905196 YP_001672367.1 CDS Shal_0132 NC_010334.1 146245 146922 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family; two component transcriptional regulator 146245..146922 Shewanella halifaxensis HAW-EB4 5903369 YP_001672368.1 CDS Shal_0133 NC_010334.1 146891 148228 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0098 integral membrane sensor signal transduction histidine kinase; histidine kinase 146891..148228 Shewanella halifaxensis HAW-EB4 5904532 YP_001672369.1 CDS Shal_0134 NC_010334.1 148280 148969 D TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein 148280..148969 Shewanella halifaxensis HAW-EB4 5904533 YP_001672370.1 CDS coaD NC_010334.1 149164 149643 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 149164..149643 Shewanella halifaxensis HAW-EB4 5906346 YP_001672371.1 CDS Shal_0136 NC_010334.1 149650 151149 D KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein 149650..151149 Shewanella halifaxensis HAW-EB4 5906347 YP_001672372.1 CDS Shal_0137 NC_010334.1 151495 152226 D PFAM: glycosyl transferase family 2; KEGG: shm:Shewmr7_3977 glycosyl transferase, family 2; glycosyl transferase family protein 151495..152226 Shewanella halifaxensis HAW-EB4 5906417 YP_001672373.1 CDS Shal_0138 NC_010334.1 152229 152894 D PFAM: SNARE associated Golgi protein; KEGG: shm:Shewmr7_3976 hypothetical protein; hypothetical protein 152229..152894 Shewanella halifaxensis HAW-EB4 5906484 YP_001672374.1 CDS Shal_0139 NC_010334.1 152949 154676 D PFAM: glycosyl transferase family 39; KEGG: shw:Sputw3181_0066 glycosyl transferase, family 39; glycosyl transferase family protein 152949..154676 Shewanella halifaxensis HAW-EB4 5906485 YP_001672375.1 CDS Shal_0140 NC_010334.1 155936 156751 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(155936..156751) Shewanella halifaxensis HAW-EB4 5906958 YP_001672376.1 CDS Shal_0141 NC_010334.1 156848 157300 R KEGG: shw:Sputw3181_0068 hypothetical protein; hypothetical protein complement(156848..157300) Shewanella halifaxensis HAW-EB4 5906959 YP_001672377.1 CDS Shal_0142 NC_010334.1 158420 160450 D PFAM: Ig domain protein group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 158420..160450 Shewanella halifaxensis HAW-EB4 5905661 YP_001672378.1 CDS Shal_0143 NC_010334.1 161411 162193 D KEGG: vvu:VV1_2522 prophage antirepressor; hypothetical protein 161411..162193 Shewanella halifaxensis HAW-EB4 5905746 YP_001672379.1 CDS Shal_0144 NC_010334.1 162347 163333 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(162347..163333) Shewanella halifaxensis HAW-EB4 5905747 YP_001672380.1 CDS Shal_0145 NC_010334.1 163354 165153 R TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: slo:Shew_3687 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA complement(163354..165153) Shewanella halifaxensis HAW-EB4 5905784 YP_001672381.1 CDS Shal_0146 NC_010334.1 165162 165764 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: slo:Shew_3686 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A complement(165162..165764) Shewanella halifaxensis HAW-EB4 5905785 YP_001672382.1 CDS Shal_0147 NC_010334.1 165815 166561 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3685 ABC transporter-related protein; ABC transporter-like protein complement(165815..166561) Shewanella halifaxensis HAW-EB4 5905878 YP_001672383.1 CDS Shal_0148 NC_010334.1 166567 167274 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_3684 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(166567..167274) Shewanella halifaxensis HAW-EB4 5904435 YP_001672384.1 CDS Shal_0149 NC_010334.1 167271 168083 R PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_3683 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(167271..168083) Shewanella halifaxensis HAW-EB4 5904436 YP_001672385.1 CDS Shal_0150 NC_010334.1 168374 169744 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: slo:Shew_3682 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 168374..169744 Shewanella halifaxensis HAW-EB4 5903345 YP_001672386.1 CDS Shal_0151 NC_010334.1 169773 171911 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3681 integral membrane sensor signal transduction histidine kinase; histidine kinase 169773..171911 Shewanella halifaxensis HAW-EB4 5903346 YP_001672387.1 CDS Shal_0152 NC_010334.1 172529 172987 R PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_4074 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(172529..172987) Shewanella halifaxensis HAW-EB4 5903355 YP_001672388.1 CDS Shal_0153 NC_010334.1 173116 173775 R TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: sbm:Shew185_4313 hypothetical protein; hypothetical protein complement(173116..173775) Shewanella halifaxensis HAW-EB4 5903349 YP_001672389.1 CDS Shal_0154 NC_010334.1 174080 179365 R PFAM: GLUG domain protein; KEGG: hch:HCH_03195 RTX toxins and related Ca2+-binding protein; GLUG domain-containing protein complement(174080..179365) Shewanella halifaxensis HAW-EB4 5903350 YP_001672390.1 CDS Shal_0155 NC_010334.1 180017 181375 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: slo:Shew_3677 isochorismate synthase; isochorismate synthase complement(180017..181375) Shewanella halifaxensis HAW-EB4 5903361 YP_001672391.1 CDS Shal_0156 NC_010334.1 181815 183764 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: she:Shewmr4_3867 TonB-dependent receptor, plug; TonB-dependent receptor plug 181815..183764 Shewanella halifaxensis HAW-EB4 5903362 YP_001672392.1 CDS Shal_0157 NC_010334.1 183782 185233 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_4712 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 183782..185233 Shewanella halifaxensis HAW-EB4 5903360 YP_001672393.1 CDS Shal_0158 NC_010334.1 185223 185915 D PFAM: cobalt transport protein; KEGG: sbl:Sbal_0091 cobalt transport protein; cobalt transport protein 185223..185915 Shewanella halifaxensis HAW-EB4 5903374 YP_001672394.1 CDS Shal_0159 NC_010334.1 185915 186460 D KEGG: slo:Shew_3673 hypothetical protein; hypothetical protein 185915..186460 Shewanella halifaxensis HAW-EB4 5903375 YP_001672395.1 CDS Shal_0160 NC_010334.1 186509 187270 D KEGG: slo:Shew_3672 hypothetical protein; hypothetical protein 186509..187270 Shewanella halifaxensis HAW-EB4 5905165 YP_001672396.1 CDS Shal_0161 NC_010334.1 187298 187513 D KEGG: shm:Shewmr7_3955 hypothetical protein; hypothetical protein 187298..187513 Shewanella halifaxensis HAW-EB4 5905166 YP_001672397.1 CDS Shal_0162 NC_010334.1 187755 188939 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: son:SO_4711 HD domain protein; metal dependent phosphohydrolase 187755..188939 Shewanella halifaxensis HAW-EB4 5905118 YP_001672398.1 CDS Shal_0163 NC_010334.1 189172 189837 D PFAM: ThiJ/PfpI domain protein; KEGG: slo:Shew_3669 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 189172..189837 Shewanella halifaxensis HAW-EB4 5905006 YP_001672399.1 CDS Shal_0164 NC_010334.1 190425 191363 R PFAM: conserved hypothetical protein; KEGG: sbm:Shew185_4296 conserved hypothetical protein 698; hypothetical protein complement(190425..191363) Shewanella halifaxensis HAW-EB4 5905007 YP_001672400.1 CDS Shal_0165 NC_010334.1 191823 193001 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(191823..193001) Shewanella halifaxensis HAW-EB4 5904265 YP_001672401.1 CDS Shal_0166 NC_010334.1 193088 193471 R TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vha:VIBHAR_02784 hypothetical protein; putative endoribonuclease L-PSP complement(193088..193471) Shewanella halifaxensis HAW-EB4 5904266 YP_001672402.1 CDS Shal_0167 NC_010334.1 193492 194172 R PFAM: YheO domain protein; KEGG: sfr:Sfri_0689 YheO domain protein; YheO domain-containing protein complement(193492..194172) Shewanella halifaxensis HAW-EB4 5904331 YP_001672403.1 CDS Shal_0168 NC_010334.1 194513 195679 D PFAM: creatinase; peptidase M24; KEGG: pin:Ping_2026 peptidase M24; peptidase M24 194513..195679 Shewanella halifaxensis HAW-EB4 5904745 YP_001672404.1 CDS Shal_0169 NC_010334.1 195745 196524 D PFAM: Asp/Glu racemase; KEGG: pin:Ping_2031 Asp/Glu racemase; Asp/Glu racemase 195745..196524 Shewanella halifaxensis HAW-EB4 5904746 YP_001672405.1 CDS Shal_0170 NC_010334.1 196564 197550 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rci:RCIX1169 hypothetical protein; hypothetical protein 196564..197550 Shewanella halifaxensis HAW-EB4 5904765 YP_001672406.1 CDS Shal_0171 NC_010334.1 197633 198787 D KEGG: pin:Ping_2027 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; amidohydrolase 197633..198787 Shewanella halifaxensis HAW-EB4 5904766 YP_001672407.1 CDS Shal_0172 NC_010334.1 199692 200906 R KEGG: shw:Sputw3181_0952 hypothetical protein; hypothetical protein complement(199692..200906) Shewanella halifaxensis HAW-EB4 5904344 YP_001672408.1 CDS Shal_0173 NC_010334.1 201090 202364 D PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03999 nitrate/nitrite transporter; major facilitator transporter 201090..202364 Shewanella halifaxensis HAW-EB4 5903412 YP_001672409.1 CDS Shal_0174 NC_010334.1 202530 203171 R PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pau:PA14_13730 putative nitrate/nitrite response regulator; NarL; two component LuxR family transcriptional regulator complement(202530..203171) Shewanella halifaxensis HAW-EB4 5903413 YP_001672410.1 CDS Shal_0175 NC_010334.1 203201 204961 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: psa:PST_0892 two-component sensor NarX; histidine kinase complement(203201..204961) Shewanella halifaxensis HAW-EB4 5903351 YP_001672411.1 CDS Shal_0176 NC_010334.1 205341 206945 D PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04020 nitrate/nitrite transporter; major facilitator transporter 205341..206945 Shewanella halifaxensis HAW-EB4 5903352 YP_001672412.1 CDS Shal_0177 NC_010334.1 207064 210828 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: psa:PST_0896 respiratory nitrate reductase alpha chain; nitrate reductase subunit alpha 207064..210828 Shewanella halifaxensis HAW-EB4 5903453 YP_001672413.1 CDS Shal_0178 NC_010334.1 210840 212378 D TIGRFAM: nitrate reductase, beta subunit; KEGG: pap:PSPA7_1235 nitrate reductase, beta subunit; nitrate reductase subunit beta 210840..212378 Shewanella halifaxensis HAW-EB4 5903394 YP_001672414.1 CDS Shal_0179 NC_010334.1 212383 213117 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: maq:Maqu_3084 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone 212383..213117 Shewanella halifaxensis HAW-EB4 5903395 YP_001672415.1 CDS Shal_0180 NC_010334.1 213128 213805 D KEGG: psa:PST_0899 respiratory nitrate reductase gamma chain; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 213128..213805 Shewanella halifaxensis HAW-EB4 5902996 YP_001672416.1 CDS Shal_0181 NC_010334.1 213950 214765 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: psa:PST_0900 probable peptidyl-prolyl cis-trans isomerase, PpiC-type; PpiC-type peptidyl-prolyl cis-trans isomerase 213950..214765 Shewanella halifaxensis HAW-EB4 5902997 YP_001672417.1 CDS Shal_0182 NC_010334.1 214812 215309 R PFAM: HPP family protein?; KEGG: tcx:Tcr_1929 HPP; HPP family protein complement(214812..215309) Shewanella halifaxensis HAW-EB4 5904165 YP_001672418.1 CDS Shal_0183 NC_010334.1 215586 215996 R KEGG: psa:PST_3997 ribonucleotide reductase, alpha subunit; ribonucleotide reductase subunit alpha complement(215586..215996) Shewanella halifaxensis HAW-EB4 5903282 YP_001672419.1 CDS Shal_0184 NC_010334.1 216010 217821 R PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: hch:HCH_04002 serine/threonine protein kinase; protein serine/threonine phosphatase complement(216010..217821) Shewanella halifaxensis HAW-EB4 5903283 YP_001672420.1 CDS Shal_0185 NC_010334.1 217811 219286 R PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04000 nitrate/nitrite transporter; major facilitator transporter complement(217811..219286) Shewanella halifaxensis HAW-EB4 5904952 YP_001672421.1 CDS Shal_0186 NC_010334.1 219584 220477 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRB1503 hypothetical membrane protein; transporter DMT superfamily protein complement(219584..220477) Shewanella halifaxensis HAW-EB4 5904953 YP_001672422.1 CDS Shal_0187 NC_010334.1 220549 220716 R KEGG: pin:Ping_2027 amidohydrolase; amidohydrolase complement(220549..220716) Shewanella halifaxensis HAW-EB4 5904901 YP_001672423.1 CDS Shal_0188 NC_010334.1 221091 222191 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: vha:VIBHAR_05496 hypothetical protein; NADH:flavin oxidoreductase 221091..222191 Shewanella halifaxensis HAW-EB4 5904904 YP_001672424.1 CDS Shal_0189 NC_010334.1 222693 224645 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF1121 BCCT family transporter; choline/carnitine/betaine transporter 222693..224645 Shewanella halifaxensis HAW-EB4 5904905 YP_001672425.1 CDS Shal_0190 NC_010334.1 224775 226130 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(224775..226130) Shewanella halifaxensis HAW-EB4 5905061 YP_001672426.1 CDS Shal_0191 NC_010334.1 226461 226937 R KEGG: sbl:Sbal_0122 hypothetical protein; hypothetical protein complement(226461..226937) Shewanella halifaxensis HAW-EB4 5905062 YP_001672427.1 CDS Shal_0192 NC_010334.1 227145 227927 R KEGG: slo:Shew_3658 hypothetical protein; hypothetical protein complement(227145..227927) Shewanella halifaxensis HAW-EB4 5905017 YP_001672428.1 CDS Shal_0193 NC_010334.1 228203 230242 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_3657 oligopeptidase A; oligopeptidase A 228203..230242 Shewanella halifaxensis HAW-EB4 5905161 YP_001672429.1 CDS Shal_0194 NC_010334.1 230394 230966 D KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein 230394..230966 Shewanella halifaxensis HAW-EB4 5905162 YP_001672430.1 CDS Shal_0195 NC_010334.1 230963 231610 R PFAM: Glutathione S-transferase domain; KEGG: shw:Sputw3181_3976 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(230963..231610) Shewanella halifaxensis HAW-EB4 5905204 YP_001672431.1 CDS Shal_0196 NC_010334.1 231805 232494 D KEGG: shn:Shewana3_4048 conserved hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 231805..232494 Shewanella halifaxensis HAW-EB4 5905205 YP_001672432.1 CDS Shal_0197 NC_010334.1 232852 234003 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0031 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 232852..234003 Shewanella halifaxensis HAW-EB4 5905304 YP_001672433.1 CDS Shal_0198 NC_010334.1 234013 237171 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 234013..237171 Shewanella halifaxensis HAW-EB4 5905423 YP_001672434.1 CDS Shal_0199 NC_010334.1 237548 238105 R TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: ypi:YpsIP31758_1434 phosphodiesterase, MJ0936 family; phosphodiesterase complement(237548..238105) Shewanella halifaxensis HAW-EB4 5905424 YP_001672435.1 CDS Shal_0200 NC_010334.1 238336 239733 D PFAM: permease; KEGG: mbb:BCG_2984 putative integral membrane protein; permease 238336..239733 Shewanella halifaxensis HAW-EB4 5905412 YP_001672436.1 CDS Shal_0201 NC_010334.1 240034 241653 R PFAM: AbgT putative transporter; KEGG: slo:Shew_3654 AbgT putative transporter; putative transporter AbgT complement(240034..241653) Shewanella halifaxensis HAW-EB4 5905413 YP_001672437.1 CDS Shal_0202 NC_010334.1 242229 243848 R PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: slo:Shew_3654 AbgT putative transporter; putative transporter AbgT complement(242229..243848) Shewanella halifaxensis HAW-EB4 5905437 YP_001672438.1 CDS Shal_0203 NC_010334.1 244721 245290 D PFAM: LemA family protein; KEGG: slo:Shew_3652 LemA family protein; LemA family protein 244721..245290 Shewanella halifaxensis HAW-EB4 5905441 YP_001672439.1 CDS Shal_0204 NC_010334.1 245375 246397 D KEGG: slo:Shew_3651 hypothetical protein; hypothetical protein 245375..246397 Shewanella halifaxensis HAW-EB4 5905442 YP_001672440.1 CDS Shal_0205 NC_010334.1 246394 247107 D PFAM: Lytic transglycosylase catalytic; KEGG: shw:Sputw3181_3969 lytic transglycosylase, catalytic; lytic transglycosylase 246394..247107 Shewanella halifaxensis HAW-EB4 5905443 YP_001672441.1 CDS vmrA NC_010334.1 247116 248498 R sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; multidrug efflux pump VmrA complement(247116..248498) Shewanella halifaxensis HAW-EB4 5905444 YP_001672442.1 CDS Shal_0207 NC_010334.1 248605 249483 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0935 transcriptional regulators, LysR family; LysR family transcriptional regulator 248605..249483 Shewanella halifaxensis HAW-EB4 5905354 YP_001672443.1 CDS Shal_0208 NC_010334.1 249677 249934 D KEGG: sbm:Shew185_4004 hypothetical protein; hypothetical protein 249677..249934 Shewanella halifaxensis HAW-EB4 5905543 YP_001672444.1 CDS Shal_0209 NC_010334.1 250283 251125 R PFAM: protein of unknown function DUF519; KEGG: shm:Shewmr7_3922 protein of unknown function DUF519; hypothetical protein complement(250283..251125) Shewanella halifaxensis HAW-EB4 5905544 YP_001672445.1 CDS Shal_0210 NC_010334.1 251182 252417 R PFAM: transcriptional regulator domain protein; KEGG: sbm:Shew185_3867 transcriptional regulator, CadC; transcriptional regulator CadC complement(251182..252417) Shewanella halifaxensis HAW-EB4 5905518 YP_001672446.1 CDS Shal_0211 NC_010334.1 252981 255275 R KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF; hypothetical protein complement(252981..255275) Shewanella halifaxensis HAW-EB4 5905519 YP_001672447.1 CDS Shal_0212 NC_010334.1 255560 256321 D PFAM: protein of unknown function DUF548; KEGG: sfr:Sfri_3857 protein of unknown function DUF548; hypothetical protein 255560..256321 Shewanella halifaxensis HAW-EB4 5905414 YP_001672448.1 CDS Shal_0213 NC_010334.1 256439 257857 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: sfr:Sfri_2763 MgtE intracellular region; magnesium transporter complement(256439..257857) Shewanella halifaxensis HAW-EB4 5905601 YP_001672449.1 CDS Shal_0214 NC_010334.1 258177 259316 R KEGG: slo:Shew_2682 hypothetical protein; hypothetical protein complement(258177..259316) Shewanella halifaxensis HAW-EB4 5905602 YP_001672450.1 CDS Shal_0215 NC_010334.1 259529 260887 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: slo:Shew_2681 general substrate transporter; major facilitator transporter complement(259529..260887) Shewanella halifaxensis HAW-EB4 5905678 YP_001672451.1 CDS Shal_0216 NC_010334.1 261162 261449 R KEGG: slo:Shew_2680 putative ferredoxin; putative ferredoxin complement(261162..261449) Shewanella halifaxensis HAW-EB4 5905679 YP_001672452.1 CDS Shal_0217 NC_010334.1 261446 262735 R PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2679 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(261446..262735) Shewanella halifaxensis HAW-EB4 5905586 YP_001672453.1 CDS Shal_0218 NC_010334.1 262827 263768 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(262827..263768) Shewanella halifaxensis HAW-EB4 5905628 YP_001672454.1 CDS Shal_0219 NC_010334.1 263782 264555 R required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA complement(263782..264555) Shewanella halifaxensis HAW-EB4 5905629 YP_001672455.1 CDS Shal_0220 NC_010334.1 265540 267129 D catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 265540..267129 Shewanella halifaxensis HAW-EB4 5905869 YP_001672456.1 CDS Shal_0221 NC_010334.1 267141 268277 D catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 267141..268277 Shewanella halifaxensis HAW-EB4 5905870 YP_001672457.1 CDS Shal_0222 NC_010334.1 268532 269767 D catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 268532..269767 Shewanella halifaxensis HAW-EB4 5905788 YP_001672458.1 CDS caiC NC_010334.1 269778 271331 D PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_2673 AMP-dependent synthetase and ligase; putative crotonobetaine/carnitine-CoA ligase 269778..271331 Shewanella halifaxensis HAW-EB4 5905874 YP_001672459.1 CDS Shal_0224 NC_010334.1 271394 272179 D catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 271394..272179 Shewanella halifaxensis HAW-EB4 5905875 YP_001672460.1 CDS Shal_0225 NC_010334.1 272273 273124 D PFAM: MaoC domain protein dehydratase; KEGG: drm:Dred_0577 MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 272273..273124 Shewanella halifaxensis HAW-EB4 5905926 YP_001672461.1 CDS Shal_0226 NC_010334.1 273204 273872 D involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 273204..273872 Shewanella halifaxensis HAW-EB4 5905927 YP_001672462.1 CDS Shal_0227 NC_010334.1 274046 274984 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: slo:Shew_2671 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 274046..274984 Shewanella halifaxensis HAW-EB4 5905890 YP_001672463.1 CDS Shal_0228 NC_010334.1 275174 276064 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2670 transcriptional regulator, LysR family; LysR family transcriptional regulator 275174..276064 Shewanella halifaxensis HAW-EB4 5906654 YP_001672464.1 CDS Shal_0229 NC_010334.1 276244 276879 R PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO_3870 disulfide bond formation protein; disulfide bond formation protein DsbB complement(276244..276879) Shewanella halifaxensis HAW-EB4 5906655 YP_001672465.1 CDS Shal_0230 NC_010334.1 276889 277500 R PFAM: DSBA oxidoreductase; KEGG: son:SO_3871 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase complement(276889..277500) Shewanella halifaxensis HAW-EB4 5906517 YP_001672466.1 CDS Shal_0231 NC_010334.1 277569 279329 R PFAM: Arylsulfotransferase; KEGG: spt:SPA3941 hypothetical protein; arylsulfotransferase complement(277569..279329) Shewanella halifaxensis HAW-EB4 5906518 YP_001672467.1 CDS Shal_0232 NC_010334.1 279344 280090 R KEGG: vfi:VF0719 putative sugar hydrolase; hypothetical protein complement(279344..280090) Shewanella halifaxensis HAW-EB4 5905943 YP_001672468.1 CDS Shal_0233 NC_010334.1 280255 280920 D PFAM: regulatory protein TetR; KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator 280255..280920 Shewanella halifaxensis HAW-EB4 5906949 YP_001672469.1 CDS Shal_0234 NC_010334.1 281119 281754 R PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO_3870 disulfide bond formation protein; disulfide bond formation protein DsbB complement(281119..281754) Shewanella halifaxensis HAW-EB4 5906950 YP_001672470.1 CDS Shal_0235 NC_010334.1 281764 282375 R PFAM: DSBA oxidoreductase; KEGG: son:SO_3871 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase complement(281764..282375) Shewanella halifaxensis HAW-EB4 5906936 YP_001672471.1 CDS Shal_0236 NC_010334.1 283096 284886 D PFAM: Arylsulfotransferase; KEGG: son:SO_3872 arylsulfate sulfotransferase; arylsulfotransferase 283096..284886 Shewanella halifaxensis HAW-EB4 5906937 YP_001672472.1 CDS Shal_0237 NC_010334.1 284936 285694 D KEGG: son:SO_3873 hypothetical protein; hypothetical protein 284936..285694 Shewanella halifaxensis HAW-EB4 5906916 YP_001672473.1 CDS Shal_0238 NC_010334.1 285880 286851 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_3874 transcriptional regulator, LysR family; LysR family transcriptional regulator 285880..286851 Shewanella halifaxensis HAW-EB4 5906878 YP_001672474.1 CDS envZ NC_010334.1 286906 288165 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(286906..288165) Shewanella halifaxensis HAW-EB4 5906879 YP_001672475.1 CDS ompR NC_010334.1 288261 288986 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(288261..288986) Shewanella halifaxensis HAW-EB4 5906863 YP_001672476.1 CDS Shal_0241 NC_010334.1 289338 289817 D TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: stm:STM3503 transcription elongation factor and transcript cleavage; transcription elongation factor GreB 289338..289817 Shewanella halifaxensis HAW-EB4 5906864 YP_001672477.1 CDS Shal_0242 NC_010334.1 289982 292339 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: slo:Shew_3634 RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 289982..292339 Shewanella halifaxensis HAW-EB4 5906857 YP_001672478.1 CDS Shal_0243 NC_010334.1 292389 292883 R KEGG: saz:Sama_3506 hypothetical protein; hypothetical protein complement(292389..292883) Shewanella halifaxensis HAW-EB4 5906773 YP_001672479.1 CDS Shal_0244 NC_010334.1 292982 293752 R KEGG: sbm:Shew185_4199 BioH protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; bioH protein complement(292982..293752) Shewanella halifaxensis HAW-EB4 5906774 YP_001672480.1 CDS Shal_0245 NC_010334.1 293804 294568 D KEGG: shw:Sputw3181_0113 competence protein ComF; competence protein ComF 293804..294568 Shewanella halifaxensis HAW-EB4 5906733 YP_001672481.1 CDS Shal_0246 NC_010334.1 294599 297139 R PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A complement(294599..297139) Shewanella halifaxensis HAW-EB4 5906734 YP_001672482.1 CDS Shal_0247 NC_010334.1 297350 297928 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 297350..297928 Shewanella halifaxensis HAW-EB4 5906709 YP_001672483.1 CDS Shal_0248 NC_010334.1 298019 299350 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbl:Sbal_0144 MATE efflux family protein; MATE efflux family protein complement(298019..299350) Shewanella halifaxensis HAW-EB4 5906629 YP_001672484.1 CDS Shal_0249 NC_010334.1 299369 300415 D PFAM: polysaccharide deacetylase; KEGG: sbl:Sbal_0145 polysaccharide deacetylase; polysaccharide deacetylase 299369..300415 Shewanella halifaxensis HAW-EB4 5906630 YP_001672485.1 CDS Shal_0250 NC_010334.1 300630 301259 R PFAM: electron transport protein SCO1/SenC; KEGG: slo:Shew_0116 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(300630..301259) Shewanella halifaxensis HAW-EB4 5906528 YP_001672486.1 CDS Shal_0251 NC_010334.1 301349 302254 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(301349..302254) Shewanella halifaxensis HAW-EB4 5906529 YP_001672487.1 CDS Shal_0252 NC_010334.1 302268 303251 R PFAM: cytochrome oxidase assembly; KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly complement(302268..303251) Shewanella halifaxensis HAW-EB4 5906348 YP_001672488.1 CDS Shal_0253 NC_010334.1 303265 303810 R KEGG: slo:Shew_0119 hypothetical protein; hypothetical protein complement(303265..303810) Shewanella halifaxensis HAW-EB4 5905880 YP_001672489.1 CDS Shal_0254 NC_010334.1 303938 304867 R KEGG: shw:Sputw3181_0129 hypothetical protein; hypothetical protein complement(303938..304867) Shewanella halifaxensis HAW-EB4 5905881 YP_001672490.1 CDS Shal_0255 NC_010334.1 304932 305813 R PFAM: cytochrome c oxidase subunit III; KEGG: slo:Shew_0122 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(304932..305813) Shewanella halifaxensis HAW-EB4 5905968 YP_001672491.1 CDS Shal_0256 NC_010334.1 305925 306509 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(305925..306509) Shewanella halifaxensis HAW-EB4 5905969 YP_001672492.1 CDS Shal_0257 NC_010334.1 306512 308116 R KEGG: shn:Shewana3_3992 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I type complement(306512..308116) Shewanella halifaxensis HAW-EB4 5906999 YP_001672493.1 CDS Shal_0258 NC_010334.1 308126 309712 R KEGG: slo:Shew_0125 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II complement(308126..309712) Shewanella halifaxensis HAW-EB4 5906923 YP_001672494.1 CDS Shal_0259 NC_010334.1 310190 310726 R KEGG: son:SO_4604 hypothetical protein; hypothetical protein complement(310190..310726) Shewanella halifaxensis HAW-EB4 5906924 YP_001672495.1 CDS Shal_0260 NC_010334.1 310723 311343 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(310723..311343) Shewanella halifaxensis HAW-EB4 5906899 YP_001672496.1 CDS Shal_0261 NC_010334.1 311970 313604 R TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase FGGY; KEGG: ppr:PBPRB0722 putative carbohydrate kinase; FGGY-family pentulose kinase complement(311970..313604) Shewanella halifaxensis HAW-EB4 5906900 YP_001672497.1 CDS Shal_0262 NC_010334.1 313613 314572 R PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0721 putative ABC transporter, permease protein; monosaccharide-transporting ATPase complement(313613..314572) Shewanella halifaxensis HAW-EB4 5906874 YP_001672498.1 CDS Shal_0263 NC_010334.1 314572 315570 R PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0720 putative permease of ABC transporter; monosaccharide-transporting ATPase complement(314572..315570) Shewanella halifaxensis HAW-EB4 5906676 YP_001672499.1 CDS Shal_0264 NC_010334.1 315563 317074 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0719 putative ATP-binding protein of ABCtransporter; ABC transporter-like protein complement(315563..317074) Shewanella halifaxensis HAW-EB4 5906677 YP_001672500.1 CDS Shal_0265 NC_010334.1 317216 318190 R KEGG: ppr:PBPRB0718 putative periplasmic binding protein; putative periplasmic-binding protein complement(317216..318190) Shewanella halifaxensis HAW-EB4 5906615 YP_001672501.1 CDS Shal_0266 NC_010334.1 318924 319838 D KEGG: vfi:VF1104 hypothetical protein; hypothetical protein 318924..319838 Shewanella halifaxensis HAW-EB4 5906616 YP_001672502.1 CDS Shal_0267 NC_010334.1 319838 321076 D PFAM: protein of unknown function DUF214; KEGG: slo:Shew_2660 protein of unknown function DUF214; hypothetical protein 319838..321076 Shewanella halifaxensis HAW-EB4 5906610 YP_001672503.1 CDS Shal_0268 NC_010334.1 321189 322313 D PFAM: protein of unknown function DUF214; KEGG: slo:Shew_2659 protein of unknown function DUF214; hypothetical protein 321189..322313 Shewanella halifaxensis HAW-EB4 5906553 YP_001672504.1 CDS Shal_0269 NC_010334.1 322347 323030 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_5040 ABC transporter, ATP-binding protein; ABC transporter-like protein 322347..323030 Shewanella halifaxensis HAW-EB4 5906554 YP_001672505.1 CDS Shal_0270 NC_010334.1 323040 324341 D KEGG: cps:CPS_5039 hypothetical protein; hypothetical protein 323040..324341 Shewanella halifaxensis HAW-EB4 5906540 YP_001672506.1 CDS Shal_0271 NC_010334.1 324601 327024 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 324601..327024 Shewanella halifaxensis HAW-EB4 5906541 YP_001672507.1 CDS Shal_0272 NC_010334.1 327024 328280 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: slo:Shew_3531 aromatic amino acid transporter; aromatic amino acid transporter 327024..328280 Shewanella halifaxensis HAW-EB4 5906408 YP_001672508.1 CDS Shal_0273 NC_010334.1 328314 329381 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB1682 hypothetical AraC-type transcriptional regulator; AraC family transcriptional regulator complement(328314..329381) Shewanella halifaxensis HAW-EB4 5905125 YP_001672509.1 CDS Shal_0274 NC_010334.1 329480 329827 D KEGG: ppr:PBPRB1681 putative permease of the major facilitator superfamily; hypothetical protein 329480..329827 Shewanella halifaxensis HAW-EB4 5905126 YP_001672510.1 CDS Shal_0275 NC_010334.1 329820 331043 D PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1680 putative multidrug resistance efflux pump; secretion protein HlyD family protein 329820..331043 Shewanella halifaxensis HAW-EB4 5905063 YP_001672511.1 CDS Shal_0276 NC_010334.1 331128 332306 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase complement(331128..332306) Shewanella halifaxensis HAW-EB4 5905064 YP_001672512.1 CDS Shal_0277 NC_010334.1 332472 333254 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sdn:Sden_3512 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 332472..333254 Shewanella halifaxensis HAW-EB4 5904770 YP_001672513.1 CDS Shal_0278 NC_010334.1 333328 336465 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_0266 heavy metal efflux pump, CzcA family protein; CzcA family heavy metal efflux protein complement(333328..336465) Shewanella halifaxensis HAW-EB4 5903749 YP_001672514.1 CDS Shal_0279 NC_010334.1 336478 338160 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sfr:Sfri_0267 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(336478..338160) Shewanella halifaxensis HAW-EB4 5903750 YP_001672515.1 CDS Shal_0280 NC_010334.1 338185 338799 R KEGG: slo:Shew_3536 hypothetical protein; hypothetical protein complement(338185..338799) Shewanella halifaxensis HAW-EB4 5906976 YP_001672516.1 CDS Shal_0281 NC_010334.1 338945 339361 R KEGG: slo:Shew_3537 hypothetical protein; hypothetical protein complement(338945..339361) Shewanella halifaxensis HAW-EB4 5906977 YP_001672517.1 CDS Shal_0282 NC_010334.1 339479 339898 R KEGG: sfr:Sfri_0591 hypothetical protein; hypothetical protein complement(339479..339898) Shewanella halifaxensis HAW-EB4 5903393 YP_001672518.1 CDS Shal_0283 NC_010334.1 340186 340620 R KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein complement(340186..340620) Shewanella halifaxensis HAW-EB4 5906202 YP_001672519.1 CDS Shal_0284 NC_010334.1 341012 341575 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: slo:Shew_3540 NapC/NirT cytochrome c domain protein; NapC/NirT cytochrome c domain-containing protein 341012..341575 Shewanella halifaxensis HAW-EB4 5906203 YP_001672520.1 CDS Shal_0285 NC_010334.1 342009 342293 R PFAM: protein of unknown function DUF1145; KEGG: spc:Sputcn32_0287 protein of unknown function DUF1145; hypothetical protein complement(342009..342293) Shewanella halifaxensis HAW-EB4 5906371 YP_001672521.1 CDS Shal_0286 NC_010334.1 342294 342914 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: shm:Shewmr7_3848 putative methyltransferase; putative methyltransferase complement(342294..342914) Shewanella halifaxensis HAW-EB4 5906372 YP_001672522.1 CDS Shal_0287 NC_010334.1 343140 344933 D KEGG: sbm:Shew185_4164 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 343140..344933 Shewanella halifaxensis HAW-EB4 5906442 YP_001672523.1 CDS Shal_0288 NC_010334.1 345005 345706 D KEGG: slo:Shew_3605 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 345005..345706 Shewanella halifaxensis HAW-EB4 5907041 YP_001672524.1 CDS Shal_0289 NC_010334.1 345706 346671 D PFAM: protein of unknown function DUF214; KEGG: slo:Shew_3604 protein of unknown function DUF214; hypothetical protein 345706..346671 Shewanella halifaxensis HAW-EB4 5907042 YP_001672525.1 CDS Shal_0290 NC_010334.1 346897 347754 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 346897..347754 Shewanella halifaxensis HAW-EB4 5904656 YP_001672526.1 CDS Shal_0291 NC_010334.1 348691 349050 R KEGG: ppr:PBPRA1981 hypothetical protein; hypothetical protein complement(348691..349050) Shewanella halifaxensis HAW-EB4 5904657 YP_001672527.1 CDS Shal_0292 NC_010334.1 349416 351221 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Proprotein convertase P; KEGG: vha:VIBHAR_05576 hypothetical protein; proprotein convertase P 349416..351221 Shewanella halifaxensis HAW-EB4 5904423 YP_001672528.1 CDS Shal_0293 NC_010334.1 351225 351701 D KEGG: vha:VIBHAR_05575 hypothetical protein; hypothetical protein 351225..351701 Shewanella halifaxensis HAW-EB4 5904617 YP_001672529.1 CDS Shal_0294 NC_010334.1 352696 354228 R TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: shn:Shewana3_3968 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase complement(352696..354228) Shewanella halifaxensis HAW-EB4 5904618 YP_001672530.1 CDS Shal_0295 NC_010334.1 354351 355412 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(354351..355412) Shewanella halifaxensis HAW-EB4 5905018 YP_001672531.1 CDS Shal_0296 NC_010334.1 355431 356282 R PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3768 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(355431..356282) Shewanella halifaxensis HAW-EB4 5905019 YP_001672532.1 CDS Shal_0297 NC_010334.1 356282 357991 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(356282..357991) Shewanella halifaxensis HAW-EB4 5904512 YP_001672533.1 CDS Shal_0298 NC_010334.1 358237 359208 D PFAM: regulatory protein LysR; KEGG: saz:Sama_2899 transcriptional regulator-like protein; LysR family transcriptional regulator 358237..359208 Shewanella halifaxensis HAW-EB4 5904426 YP_001672534.1 CDS Shal_0299 NC_010334.1 359276 360241 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_3964 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(359276..360241) Shewanella halifaxensis HAW-EB4 5904427 YP_001672535.1 CDS Shal_0300 NC_010334.1 360798 361289 D KEGG: slo:Shew_3155 hypothetical protein; hypothetical protein 360798..361289 Shewanella halifaxensis HAW-EB4 5906184 YP_001672536.1 CDS Shal_0301 NC_010334.1 361373 361843 D KEGG: saz:Sama_2902 hypothetical protein; hypothetical protein 361373..361843 Shewanella halifaxensis HAW-EB4 5906185 YP_001672537.1 CDS Shal_0302 NC_010334.1 361857 362540 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin 361857..362540 Shewanella halifaxensis HAW-EB4 5906091 YP_001672538.1 CDS Shal_0303 NC_010334.1 362537 363478 D PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3893 polysulphide reductase, NrfD; polysulfide reductase NrfD 362537..363478 Shewanella halifaxensis HAW-EB4 5906576 YP_001672539.1 CDS Shal_0304 NC_010334.1 363500 363790 D KEGG: shw:Sputw3181_2184 hypothetical protein; hypothetical protein 363500..363790 Shewanella halifaxensis HAW-EB4 5906577 YP_001672540.1 CDS Shal_0305 NC_010334.1 364043 364504 R PFAM: protein of unknown function DUF1332; KEGG: shw:Sputw3181_3890 protein of unknown function DUF1332; hypothetical protein complement(364043..364504) Shewanella halifaxensis HAW-EB4 5906501 YP_001672541.1 CDS Shal_0306 NC_010334.1 364606 365124 R KEGG: slo:Shew_3594 hypothetical protein; hypothetical protein complement(364606..365124) Shewanella halifaxensis HAW-EB4 5906502 YP_001672542.1 CDS Shal_0307 NC_010334.1 365308 366054 D KEGG: slo:Shew_3593 hypothetical protein; hypothetical protein 365308..366054 Shewanella halifaxensis HAW-EB4 5906718 YP_001672543.1 CDS Shal_0308 NC_010334.1 366178 367602 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3592 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 366178..367602 Shewanella halifaxensis HAW-EB4 5903635 YP_001672544.1 CDS Shal_0309 NC_010334.1 367748 369025 D KEGG: slo:Shew_3591 hypothetical protein; hypothetical protein 367748..369025 Shewanella halifaxensis HAW-EB4 5903636 YP_001672545.1 CDS Shal_0310 NC_010334.1 369050 369382 R KEGG: slo:Shew_3590 hypothetical protein; hypothetical protein complement(369050..369382) Shewanella halifaxensis HAW-EB4 5903904 YP_001672546.1 CDS Shal_0311 NC_010334.1 369540 370508 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3589 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(369540..370508) Shewanella halifaxensis HAW-EB4 5903905 YP_001672547.1 CDS Shal_0312 NC_010334.1 370609 371811 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_3948 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 370609..371811 Shewanella halifaxensis HAW-EB4 5905833 YP_001672548.1 CDS Shal_0313 NC_010334.1 371981 372574 D PFAM: DTW domain containing protein; KEGG: sbm:Shew185_4137 DTW domain containing protein; DTW domain-containing protein 371981..372574 Shewanella halifaxensis HAW-EB4 5906164 YP_001672549.1 CDS Shal_0314 NC_010334.1 372829 374976 R KEGG: sbl:Sbal_0199 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(372829..374976) Shewanella halifaxensis HAW-EB4 5906165 YP_001672550.1 CDS Shal_0315 NC_010334.1 375346 375738 D KEGG: slo:Shew_3584 hypothetical protein; hypothetical protein 375346..375738 Shewanella halifaxensis HAW-EB4 5906941 YP_001672551.1 CDS Shal_0316 NC_010334.1 375754 376389 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_3583 methyltransferase type 12; type 11 methyltransferase 375754..376389 Shewanella halifaxensis HAW-EB4 5906942 YP_001672552.1 CDS Shal_0317 NC_010334.1 376477 377448 D KEGG: bfs:BF1302 hypothetical protein; hypothetical protein 376477..377448 Shewanella halifaxensis HAW-EB4 5906302 YP_001672553.1 CDS Shal_0318 NC_010334.1 377522 378190 R PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_3582 hypothetical protein; type IV pilus assembly PilZ complement(377522..378190) Shewanella halifaxensis HAW-EB4 5903940 YP_001672554.1 CDS Shal_0319 NC_010334.1 378480 379811 D PFAM: peptidase M16 domain protein; KEGG: slo:Shew_3581 peptidase M16 domain protein; peptidase M16 domain-containing protein 378480..379811 Shewanella halifaxensis HAW-EB4 5903941 YP_001672555.1 CDS Shal_0320 NC_010334.1 379808 381274 D PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_3741 peptidase M16 domain protein; peptidase M16 domain-containing protein 379808..381274 Shewanella halifaxensis HAW-EB4 5903898 YP_001672556.1 CDS Shal_0321 NC_010334.1 381411 381872 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbm:Shew185_4126 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase complement(381411..381872) Shewanella halifaxensis HAW-EB4 5903899 YP_001672557.1 CDS Shal_0322 NC_010334.1 382088 383020 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_2285 transcriptional regulator, LysR family; LysR family transcriptional regulator 382088..383020 Shewanella halifaxensis HAW-EB4 5903857 YP_001672558.1 CDS Shal_0323 NC_010334.1 383624 384397 D hypothetical protein 383624..384397 Shewanella halifaxensis HAW-EB4 5903717 YP_001672559.1 CDS Shal_0324 NC_010334.1 384811 385155 D KEGG: esa:ESA_02741 hypothetical protein; hypothetical protein 384811..385155 Shewanella halifaxensis HAW-EB4 5903718 YP_001672560.1 CDS Shal_0325 NC_010334.1 386672 386920 D KEGG: vha:VIBHAR_p08260 hypothetical protein; hypothetical protein 386672..386920 Shewanella halifaxensis HAW-EB4 5904108 YP_001672561.1 CDS Shal_0326 NC_010334.1 387341 388234 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: sfr:Sfri_1984 radical SAM domain protein; radical SAM domain-containing protein complement(387341..388234) Shewanella halifaxensis HAW-EB4 5904109 YP_001672562.1 CDS Shal_0327 NC_010334.1 388291 389814 R KEGG: sbm:Shew185_2283 hypothetical protein; hypothetical protein complement(388291..389814) Shewanella halifaxensis HAW-EB4 5903473 YP_001672563.1 CDS Shal_0328 NC_010334.1 390068 391588 R PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase complement(390068..391588) Shewanella halifaxensis HAW-EB4 5904168 YP_001672564.1 CDS Shal_0329 NC_010334.1 391885 392865 D TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbl:Sbal_0250 alcohol dehydrogenase, zinc-binding domain protein; quinone oxidoreductase putative YhdH/YhfP 391885..392865 Shewanella halifaxensis HAW-EB4 5904169 YP_001672565.1 CDS Shal_0330 NC_010334.1 393275 394207 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF0021 transcriptional regulators, LysR family; LysR family transcriptional regulator complement(393275..394207) Shewanella halifaxensis HAW-EB4 5903992 YP_001672566.1 CDS Shal_0331 NC_010334.1 394704 396224 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: spc:Sputcn32_3536 flavocytochrome c; flavocytochrome c 394704..396224 Shewanella halifaxensis HAW-EB4 5903993 YP_001672567.1 CDS Shal_0332 NC_010334.1 396253 396606 D KEGG: spc:Sputcn32_3535 tetraheme cytochrome c; tetraheme cytochrome c 396253..396606 Shewanella halifaxensis HAW-EB4 5904050 YP_001672568.1 CDS Shal_0333 NC_010334.1 396869 398113 D KEGG: spc:Sputcn32_3534 hypothetical protein; hypothetical protein 396869..398113 Shewanella halifaxensis HAW-EB4 5904122 YP_001672569.1 CDS Shal_0334 NC_010334.1 398330 399439 D KEGG: sbm:Shew185_2536 hypothetical protein; hypothetical protein 398330..399439 Shewanella halifaxensis HAW-EB4 5904123 YP_001672570.1 CDS Shal_0335 NC_010334.1 399578 400465 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shm:Shewmr7_2226 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(399578..400465) Shewanella halifaxensis HAW-EB4 5904149 YP_001672571.1 CDS Shal_0336 NC_010334.1 400587 401234 D PFAM: regulatory protein TetR; KEGG: sbl:Sbal_0259 putative transcriptional regulator, TetR family; regulatory protein TetR 400587..401234 Shewanella halifaxensis HAW-EB4 5904150 YP_001672572.1 CDS Shal_0337 NC_010334.1 401249 402619 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbl:Sbal_0260 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(401249..402619) Shewanella halifaxensis HAW-EB4 5903793 YP_001672573.1 CDS Shal_0338 NC_010334.1 402620 403303 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(402620..403303) Shewanella halifaxensis HAW-EB4 5903500 YP_001672574.1 CDS Shal_0339 NC_010334.1 403532 404014 D PFAM: protein of unknown function Spy-related; KEGG: slo:Shew_3569 protein of unknown function, Spy-related; hypothetical protein 403532..404014 Shewanella halifaxensis HAW-EB4 5903501 YP_001672575.1 CDS Shal_0340 NC_010334.1 404164 405033 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 404164..405033 Shewanella halifaxensis HAW-EB4 5903518 YP_001672576.1 CDS Shal_0341 NC_010334.1 405148 406557 R KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC complement(405148..406557) Shewanella halifaxensis HAW-EB4 5903519 YP_001672577.1 CDS Shal_0342 NC_010334.1 406575 407615 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sbl:Sbal_0267 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(406575..407615) Shewanella halifaxensis HAW-EB4 5903548 YP_001672578.1 CDS Shal_0343 NC_010334.1 407765 408313 R KEGG: slo:Shew_3559 hypothetical protein; hypothetical protein complement(407765..408313) Shewanella halifaxensis HAW-EB4 5903571 YP_001672579.1 CDS Shal_0344 NC_010334.1 408544 409194 D KEGG: ppr:PBPRA1243 hypothetical protein; hypothetical protein 408544..409194 Shewanella halifaxensis HAW-EB4 5903572 YP_001672580.1 CDS Shal_0345 NC_010334.1 409381 410058 R PFAM: ThiJ/PfpI domain protein; KEGG: sbm:Shew185_0262 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(409381..410058) Shewanella halifaxensis HAW-EB4 5903581 YP_001672581.1 CDS Shal_0346 NC_010334.1 410170 411327 R PFAM: iron-containing alcohol dehydrogenase; KEGG: shw:Sputw3181_0227 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(410170..411327) Shewanella halifaxensis HAW-EB4 5903582 YP_001672582.1 CDS Shal_0347 NC_010334.1 411474 411926 R PFAM: regulatory protein AsnC/Lrp family; KEGG: slo:Shew_3558 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(411474..411926) Shewanella halifaxensis HAW-EB4 5903626 YP_001672583.1 CDS Shal_0348 NC_010334.1 412290 412595 R hypothetical protein complement(412290..412595) Shewanella halifaxensis HAW-EB4 5903594 YP_001672584.1 CDS Shal_0349 NC_010334.1 412844 413854 D KEGG: sus:Acid_2127 glycosyl hydrolase, BNR repeat-containing protein; BNR repeat-containing glycosyl hydrolase 412844..413854 Shewanella halifaxensis HAW-EB4 5903595 YP_001672585.1 CDS Shal_0350 NC_010334.1 413922 414236 R PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_1386 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(413922..414236) Shewanella halifaxensis HAW-EB4 5907055 YP_001672586.1 CDS Shal_0351 NC_010334.1 414278 414706 R hypothetical protein complement(414278..414706) Shewanella halifaxensis HAW-EB4 5907056 YP_001672587.1 CDS Shal_0352 NC_010334.1 414929 416164 R PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3722 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(414929..416164) Shewanella halifaxensis HAW-EB4 5904697 YP_001672588.1 CDS glnA NC_010334.1 416340 417749 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(416340..417749) Shewanella halifaxensis HAW-EB4 5903294 YP_001672589.1 CDS Shal_0354 NC_010334.1 418452 420263 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: saz:Sama_3415 virulence regulator BipA; GTP-binding protein TypA 418452..420263 Shewanella halifaxensis HAW-EB4 5903295 YP_001672590.1 CDS Shal_0355 NC_010334.1 420918 422369 D PFAM: Disulphide bond formation protein DsbB; KEGG: she:Shewmr4_3658 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 420918..422369 Shewanella halifaxensis HAW-EB4 5904363 YP_001672591.1 CDS Shal_0356 NC_010334.1 422650 423513 D TIGRFAM: pyridoxal kinase; KEGG: vfi:VF2056 pyridoxine kinase; pyridoxal kinase 422650..423513 Shewanella halifaxensis HAW-EB4 5904364 YP_001672592.1 CDS Shal_0357 NC_010334.1 423905 425119 R KEGG: slo:Shew_3549 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(423905..425119) Shewanella halifaxensis HAW-EB4 5905069 YP_001672593.1 CDS Shal_0358 NC_010334.1 425302 425949 R KEGG: sbm:Shew185_0312 hypothetical protein; hypothetical protein complement(425302..425949) Shewanella halifaxensis HAW-EB4 5905059 YP_001672594.1 CDS Shal_0359 NC_010334.1 425981 426205 R KEGG: slo:Shew_3546 hypothetical protein; hypothetical protein complement(425981..426205) Shewanella halifaxensis HAW-EB4 5905060 YP_001672595.1 CDS rbn NC_010334.1 426342 427322 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 426342..427322 Shewanella halifaxensis HAW-EB4 5904854 YP_001672596.1 CDS Shal_0361 NC_010334.1 427328 428260 D PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_3544 alpha/beta hydrolase fold; prolyl aminopeptidase 427328..428260 Shewanella halifaxensis HAW-EB4 5904855 YP_001672597.1 CDS Shal_0362 NC_010334.1 428281 428862 D KEGG: sbm:Shew185_0316 hypothetical protein; hypothetical protein 428281..428862 Shewanella halifaxensis HAW-EB4 5905542 YP_001672598.1 CDS Shal_0363 NC_010334.1 429455 429892 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 429455..429892 Shewanella halifaxensis HAW-EB4 5905838 YP_001672599.1 CDS Shal_0365 NC_010334.1 430407 430742 R PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_0323 rhodanese domain protein; rhodanese domain-containing protein complement(430407..430742) Shewanella halifaxensis HAW-EB4 5904803 YP_001672600.1 CDS Shal_0366 NC_010334.1 431309 432556 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(431309..432556) Shewanella halifaxensis HAW-EB4 5904804 YP_001672601.1 CDS fabG NC_010334.1 432553 433278 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(432553..433278) Shewanella halifaxensis HAW-EB4 5905910 YP_001672602.1 CDS Shal_0368 NC_010334.1 433388 433933 R PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sfr:Sfri_0339 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ complement(433388..433933) Shewanella halifaxensis HAW-EB4 5904739 YP_001672603.1 CDS Shal_0369 NC_010334.1 433902 435200 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(433902..435200) Shewanella halifaxensis HAW-EB4 5904740 YP_001672604.1 CDS Shal_0370 NC_010334.1 435223 435885 R KEGG: shn:Shewana3_0330 hypothetical protein; hypothetical protein complement(435223..435885) Shewanella halifaxensis HAW-EB4 5907012 YP_001672605.1 CDS Shal_0371 NC_010334.1 435873 437180 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; tryptophan halogenase complement(435873..437180) Shewanella halifaxensis HAW-EB4 5907013 YP_001672606.1 CDS Shal_0372 NC_010334.1 437167 439602 R KEGG: shw:Sputw3181_0291 hypothetical protein; hypothetical protein complement(437167..439602) Shewanella halifaxensis HAW-EB4 5906729 YP_001672607.1 CDS Shal_0373 NC_010334.1 439608 440375 R KEGG: slo:Shew_3519 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(439608..440375) Shewanella halifaxensis HAW-EB4 5906497 YP_001672608.1 CDS Shal_0374 NC_010334.1 440372 440818 R KEGG: sfr:Sfri_0345 conserved hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(440372..440818) Shewanella halifaxensis HAW-EB4 5906498 YP_001672609.1 CDS Shal_0375 NC_010334.1 441080 442642 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_3517 histidine ammonia-lyase; histidine ammonia-lyase complement(441080..442642) Shewanella halifaxensis HAW-EB4 5905876 YP_001672610.1 CDS Shal_0376 NC_010334.1 442639 444369 R PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: slo:Shew_3516 glycosyl transferase, family 2; glycosyl transferase family protein complement(442639..444369) Shewanella halifaxensis HAW-EB4 5905877 YP_001672611.1 CDS Shal_0377 NC_010334.1 444369 444755 R PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: shn:Shewana3_0337 thioester dehydrase family protein; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ complement(444369..444755) Shewanella halifaxensis HAW-EB4 5906382 YP_001672612.1 CDS Shal_0378 NC_010334.1 444752 446131 R KEGG: slo:Shew_3514 hypothetical protein; hypothetical protein complement(444752..446131) Shewanella halifaxensis HAW-EB4 5905298 YP_001672613.1 CDS Shal_0379 NC_010334.1 446128 446676 R KEGG: slo:Shew_3513 hypothetical protein; hypothetical protein complement(446128..446676) Shewanella halifaxensis HAW-EB4 5905299 YP_001672614.1 CDS Shal_0380 NC_010334.1 446676 446924 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(446676..446924) Shewanella halifaxensis HAW-EB4 5904813 YP_001672615.1 CDS Shal_0381 NC_010334.1 446934 447188 R KEGG: slo:Shew_3511 acyl carrier protein, putative; acyl carrier protein complement(446934..447188) Shewanella halifaxensis HAW-EB4 5904814 YP_001672616.1 CDS Shal_0382 NC_010334.1 447185 448003 R PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_3510 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(447185..448003) Shewanella halifaxensis HAW-EB4 5906163 YP_001672617.1 CDS Shal_0383 NC_010334.1 447996 448733 R KEGG: shm:Shewmr7_3674 hypothetical protein; hypothetical protein complement(447996..448733) Shewanella halifaxensis HAW-EB4 5906397 YP_001672618.1 CDS Shal_0384 NC_010334.1 448992 449858 R KEGG: slo:Shew_3508 hypothetical protein; hypothetical protein complement(448992..449858) Shewanella halifaxensis HAW-EB4 5906398 YP_001672619.1 CDS Shal_0385 NC_010334.1 450002 452092 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(450002..452092) Shewanella halifaxensis HAW-EB4 5905400 YP_001672620.1 CDS Shal_0386 NC_010334.1 452235 453161 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shw:Sputw3181_3775 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter complement(452235..453161) Shewanella halifaxensis HAW-EB4 5905401 YP_001672621.1 CDS Shal_0387 NC_010334.1 453340 454995 R PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_3502 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(453340..454995) Shewanella halifaxensis HAW-EB4 5903428 YP_001672622.1 CDS Shal_0388 NC_010334.1 455259 455945 R specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase complement(455259..455945) Shewanella halifaxensis HAW-EB4 5903442 YP_001672623.1 CDS Shal_0389 NC_010334.1 456021 456404 R TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: slo:Shew_3500 putative endoribonuclease L-PSP; putative endoribonuclease L-PSP complement(456021..456404) Shewanella halifaxensis HAW-EB4 5903443 YP_001672624.1 CDS Shal_0390 NC_010334.1 456435 458540 R KEGG: slo:Shew_3499 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(456435..458540) Shewanella halifaxensis HAW-EB4 5903250 YP_001672625.1 CDS rpoZ NC_010334.1 458554 458835 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(458554..458835) Shewanella halifaxensis HAW-EB4 5903251 YP_001672626.1 CDS gmk NC_010334.1 458897 459556 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(458897..459556) Shewanella halifaxensis HAW-EB4 5903222 YP_001672627.1 CDS Shal_0393 NC_010334.1 459858 460988 D KEGG: slo:Shew_3496 hypothetical protein; hypothetical protein 459858..460988 Shewanella halifaxensis HAW-EB4 5903223 YP_001672628.1 CDS Shal_0394 NC_010334.1 461132 462037 D KEGG: shm:Shewmr7_0332 hypothetical protein; hypothetical protein 461132..462037 Shewanella halifaxensis HAW-EB4 5904653 YP_001672629.1 CDS Shal_0395 NC_010334.1 462129 463199 D PFAM: aminoglycoside phosphotransferase; KEGG: sbm:Shew185_0356 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 462129..463199 Shewanella halifaxensis HAW-EB4 5904654 YP_001672630.1 CDS Shal_0396 NC_010334.1 463660 464946 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: slo:Shew_3493 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 463660..464946 Shewanella halifaxensis HAW-EB4 5903311 YP_001672631.1 CDS Shal_0397 NC_010334.1 465034 465732 R PFAM: protein of unknown function DUF159; KEGG: maq:Maqu_3372 protein of unknown function DUF159; hypothetical protein complement(465034..465732) Shewanella halifaxensis HAW-EB4 5903312 YP_001672632.1 CDS Shal_0398 NC_010334.1 465927 467195 D PFAM: amidohydrolase; KEGG: vha:VIBHAR_06184 hypothetical protein; amidohydrolase 465927..467195 Shewanella halifaxensis HAW-EB4 5903433 YP_001672633.1 CDS Shal_0399 NC_010334.1 467410 468852 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: ppr:PBPRB0277 hypothetical amino acid decarboxylase; pyridoxal-dependent decarboxylase 467410..468852 Shewanella halifaxensis HAW-EB4 5903323 YP_001672634.1 CDS Shal_0400 NC_010334.1 468890 469324 D KEGG: ppr:PBPRB1867 hypothetical protein; hypothetical protein 468890..469324 Shewanella halifaxensis HAW-EB4 5903324 YP_001672635.1 CDS Shal_0401 NC_010334.1 469485 470939 R PFAM: permease; KEGG: mbb:BCG_2984 putative integral membrane protein; permease complement(469485..470939) Shewanella halifaxensis HAW-EB4 5904215 YP_001672636.1 CDS Shal_0402 NC_010334.1 471098 471766 R PFAM: ERCC4 domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: spc:Sputcn32_3619 ERCC4 domain protein; ERCC4 domain-containing protein complement(471098..471766) Shewanella halifaxensis HAW-EB4 5904216 YP_001672637.1 CDS Shal_0403 NC_010334.1 472030 472743 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(472030..472743) Shewanella halifaxensis HAW-EB4 5903269 YP_001672638.1 CDS Shal_0404 NC_010334.1 472769 475192 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ent:Ent638_1418 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; anaerobic dimethyl sulfoxide reductase subunit A complement(472769..475192) Shewanella halifaxensis HAW-EB4 5903270 YP_001672639.1 CDS Shal_0405 NC_010334.1 475223 476062 R KEGG: stm:STM4307 putative anaerobic dimethyl sulfoxide reductase, subunit C; putative anaerobic dimethyl sulfoxide reductase subunit C complement(475223..476062) Shewanella halifaxensis HAW-EB4 5903252 YP_001672640.1 CDS Shal_0406 NC_010334.1 476065 476688 R TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vfi:VFA0081 anaerobic dimethyl sulfoxide reductase chain B; dimethylsulfoxide reductase chain B complement(476065..476688) Shewanella halifaxensis HAW-EB4 5903253 YP_001672641.1 CDS Shal_0407 NC_010334.1 476840 477514 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: spc:Sputcn32_0666 response regulator receiver protein; two component LuxR family transcriptional regulator complement(476840..477514) Shewanella halifaxensis HAW-EB4 5902774 YP_001672642.1 CDS Shal_0408 NC_010334.1 477495 479276 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppr:PBPRB0007 hypothetical histidine kinase; histidine kinase complement(477495..479276) Shewanella halifaxensis HAW-EB4 5902775 YP_001672643.1 CDS Shal_0409 NC_010334.1 479557 480678 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_3855 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein complement(479557..480678) Shewanella halifaxensis HAW-EB4 5903262 YP_001672644.1 CDS Shal_0410 NC_010334.1 480682 482274 R member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; putative transporter complement(480682..482274) Shewanella halifaxensis HAW-EB4 5904833 YP_001672645.1 CDS Shal_0411 NC_010334.1 482797 483132 D KEGG: cdf:CD3003 probable carbohydrate hydrolase (N-terminus); putative carbohydrate hydrolase (N-terminus) 482797..483132 Shewanella halifaxensis HAW-EB4 5904834 YP_001672646.1 CDS Shal_0412 NC_010334.1 483129 484310 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: cdf:CD3002 probable carbohydrate hydrolase; D-galactarate dehydratase/Altronate hydrolase domain-containing protein 483129..484310 Shewanella halifaxensis HAW-EB4 5904877 YP_001672647.1 CDS Shal_0413 NC_010334.1 484396 485298 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7696 transcriptional regulator, LysR family; LysR family transcriptional regulator 484396..485298 Shewanella halifaxensis HAW-EB4 5904878 YP_001672648.1 CDS Shal_0414 NC_010334.1 485367 486035 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_B4119 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator 485367..486035 Shewanella halifaxensis HAW-EB4 5904775 YP_001672649.1 CDS Shal_0415 NC_010334.1 486132 487418 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dsy:DSY4261 hypothetical protein; ammonium transporter complement(486132..487418) Shewanella halifaxensis HAW-EB4 5904776 YP_001672650.1 CDS Shal_0416 NC_010334.1 487711 488979 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO_3706 NupC family protein; nucleoside transporter complement(487711..488979) Shewanella halifaxensis HAW-EB4 5904935 YP_001672651.1 CDS Shal_0417 NC_010334.1 489231 490070 R PFAM: purine or other phosphorylase family 1; KEGG: son:SO_3705 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative; purine phosphorylase family 1 complement(489231..490070) Shewanella halifaxensis HAW-EB4 5904936 YP_001672652.1 CDS Shal_0418 NC_010334.1 490530 493748 R PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cps:CPS_3374 putative helicase; type III restriction protein res subunit complement(490530..493748) Shewanella halifaxensis HAW-EB4 5905027 YP_001672653.1 CDS Shal_0419 NC_010334.1 494094 495401 R PFAM: HipA domain protein; KEGG: sbm:Shew185_0650 HipA domain protein; HipA domain-containing protein complement(494094..495401) Shewanella halifaxensis HAW-EB4 5905028 YP_001672654.1 CDS Shal_0420 NC_010334.1 495388 495636 R PFAM: helix-turn-helix domain protein; KEGG: slo:Shew_0478 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(495388..495636) Shewanella halifaxensis HAW-EB4 5905041 YP_001672655.1 CDS Shal_0421 NC_010334.1 496113 496976 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: slo:Shew_3489 YicC N-terminal domain protein; hypothetical protein complement(496113..496976) Shewanella halifaxensis HAW-EB4 5905091 YP_001672656.1 CDS rph NC_010334.1 497250 497963 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 497250..497963 Shewanella halifaxensis HAW-EB4 5905092 YP_001672657.1 CDS pyrE NC_010334.1 498083 498724 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 498083..498724 Shewanella halifaxensis HAW-EB4 5905242 YP_001672658.1 CDS folE NC_010334.1 499051 499710 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(499051..499710) Shewanella halifaxensis HAW-EB4 5905243 YP_001672659.1 CDS Shal_0425 NC_010334.1 499947 501911 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: slo:Shew_3485 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(499947..501911) Shewanella halifaxensis HAW-EB4 5905260 YP_001672660.1 CDS slmA NC_010334.1 502045 502638 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(502045..502638) Shewanella halifaxensis HAW-EB4 5905261 YP_001672661.1 CDS dut NC_010334.1 502739 503197 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(502739..503197) Shewanella halifaxensis HAW-EB4 5905350 YP_001672662.1 CDS Shal_0428 NC_010334.1 503197 504390 R KEGG: sfr:Sfri_3829 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(503197..504390) Shewanella halifaxensis HAW-EB4 5905351 YP_001672663.1 CDS radC NC_010334.1 504539 505216 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 504539..505216 Shewanella halifaxensis HAW-EB4 5904282 YP_001672664.1 CDS rpmB NC_010334.1 505345 505581 D required for 70S ribosome assembly; 50S ribosomal protein L28 505345..505581 Shewanella halifaxensis HAW-EB4 5904283 YP_001672665.1 CDS rpmG NC_010334.1 505588 505761 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 505588..505761 Shewanella halifaxensis HAW-EB4 5905313 YP_001672666.1 CDS Shal_0432 NC_010334.1 506236 507558 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 506236..507558 Shewanella halifaxensis HAW-EB4 5905385 YP_001672667.1 CDS Shal_0433 NC_010334.1 507652 508158 D KEGG: shw:Sputw3181_0369 hypothetical protein; hypothetical protein 507652..508158 Shewanella halifaxensis HAW-EB4 5905386 YP_001672668.1 CDS Shal_0434 NC_010334.1 508207 509094 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: shw:Sputw3181_0370 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein complement(508207..509094) Shewanella halifaxensis HAW-EB4 5905807 YP_001672669.1 CDS Shal_0435 NC_010334.1 509260 509724 R PFAM: thioesterase superfamily protein; KEGG: son:SO_4242 hypothetical protein; hypothetical protein complement(509260..509724) Shewanella halifaxensis HAW-EB4 5905808 YP_001672670.1 CDS Shal_0436 NC_010334.1 509886 511709 D KEGG: shw:Sputw3181_0372 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 509886..511709 Shewanella halifaxensis HAW-EB4 5905728 YP_001672671.1 CDS Shal_0437 NC_010334.1 512014 513795 R KEGG: slo:Shew_3473 response regulator receiver protein; response regulator receiver protein complement(512014..513795) Shewanella halifaxensis HAW-EB4 5905729 YP_001672672.1 CDS Shal_0438 NC_010334.1 514383 515954 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 514383..515954 Shewanella halifaxensis HAW-EB4 5905667 YP_001672673.1 CDS Shal_0439 NC_010334.1 516033 517127 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 516033..517127 Shewanella halifaxensis HAW-EB4 5905668 YP_001672674.1 CDS Shal_0440 NC_010334.1 517130 518530 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 517130..518530 Shewanella halifaxensis HAW-EB4 5905823 YP_001672675.1 CDS leuD NC_010334.1 518540 519145 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 518540..519145 Shewanella halifaxensis HAW-EB4 5905824 YP_001672676.1 CDS Shal_0442 NC_010334.1 519659 520945 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO_4232 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein 519659..520945 Shewanella halifaxensis HAW-EB4 5906250 YP_001672677.1 CDS Shal_0443 NC_010334.1 521230 521766 D KEGG: slo:Shew_3467 hypothetical protein; hypothetical protein 521230..521766 Shewanella halifaxensis HAW-EB4 5905630 YP_001672678.1 CDS Shal_0444 NC_010334.1 521778 523259 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: slo:Shew_3466 glycerol kinase; glycerol kinase 521778..523259 Shewanella halifaxensis HAW-EB4 5905631 YP_001672679.1 CDS Shal_0445 NC_010334.1 523288 523752 R KEGG: slo:Shew_3465 hypothetical protein; hypothetical protein complement(523288..523752) Shewanella halifaxensis HAW-EB4 5905684 YP_001672680.1 CDS Shal_0446 NC_010334.1 524257 524715 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 524257..524715 Shewanella halifaxensis HAW-EB4 5905685 YP_001672681.1 CDS mraW NC_010334.1 524745 525692 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: slo:Shew_3461 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 524745..525692 Shewanella halifaxensis HAW-EB4 5906974 YP_001672682.1 CDS Shal_0448 NC_010334.1 525710 526024 D PFAM: cell division protein FtsL; KEGG: slo:Shew_3460 cell division protein FtsL; cell division protein FtsL 525710..526024 Shewanella halifaxensis HAW-EB4 5906975 YP_001672683.1 CDS Shal_0449 NC_010334.1 526021 527757 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: slo:Shew_3459 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 526021..527757 Shewanella halifaxensis HAW-EB4 5906903 YP_001672684.1 CDS murE NC_010334.1 527757 529223 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 527757..529223 Shewanella halifaxensis HAW-EB4 5906904 YP_001672685.1 CDS Shal_0451 NC_010334.1 529220 530599 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: slo:Shew_3457 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 529220..530599 Shewanella halifaxensis HAW-EB4 5906800 YP_001672686.1 CDS mraY NC_010334.1 530599 531681 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 530599..531681 Shewanella halifaxensis HAW-EB4 5906801 YP_001672687.1 CDS murD NC_010334.1 531711 533030 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 531711..533030 Shewanella halifaxensis HAW-EB4 5906793 YP_001672688.1 CDS Shal_0454 NC_010334.1 533020 534240 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: slo:Shew_3454 cell division protein FtsW; cell division protein FtsW 533020..534240 Shewanella halifaxensis HAW-EB4 5906794 YP_001672689.1 CDS murG NC_010334.1 534249 535346 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 534249..535346 Shewanella halifaxensis HAW-EB4 5906795 YP_001672690.1 CDS murC NC_010334.1 535348 536817 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 535348..536817 Shewanella halifaxensis HAW-EB4 5906551 YP_001672691.1 CDS Shal_0457 NC_010334.1 536923 537687 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: slo:Shew_3451 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 536923..537687 Shewanella halifaxensis HAW-EB4 5906552 YP_001672692.1 CDS Shal_0458 NC_010334.1 537691 538926 D PFAM: cell division protein FtsA; KEGG: slo:Shew_3450 cell division protein FtsA; cell division protein FtsA 537691..538926 Shewanella halifaxensis HAW-EB4 5906333 YP_001672693.1 CDS Shal_0459 NC_010334.1 538958 540145 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 538958..540145 Shewanella halifaxensis HAW-EB4 5906334 YP_001672694.1 CDS lpxC NC_010334.1 540323 541243 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 540323..541243 Shewanella halifaxensis HAW-EB4 5906319 YP_001672695.1 CDS Shal_0461 NC_010334.1 541251 541703 R KEGG: slo:Shew_3447 hypothetical protein; hypothetical protein complement(541251..541703) Shewanella halifaxensis HAW-EB4 5906320 YP_001672696.1 CDS Shal_0462 NC_010334.1 541731 542630 D PFAM: peptidase M23B; KEGG: slo:Shew_3446 peptidase M23B; peptidase M23B 541731..542630 Shewanella halifaxensis HAW-EB4 5906223 YP_001672697.1 CDS Shal_0463 NC_010334.1 542691 545414 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 542691..545414 Shewanella halifaxensis HAW-EB4 5906224 YP_001672698.1 CDS Shal_0464 NC_010334.1 552397 552786 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: sbm:Shew185_3948 mutator MutT protein; mutator MutT protein complement(552397..552786) Shewanella halifaxensis HAW-EB4 5906308 YP_001672699.1 CDS Shal_0465 NC_010334.1 552783 553022 R PFAM: protein of unknown function DUF329; KEGG: slo:Shew_3443 protein of unknown function DUF329; hypothetical protein complement(552783..553022) Shewanella halifaxensis HAW-EB4 5906235 YP_001672700.1 CDS Shal_0466 NC_010334.1 553082 553816 R PFAM: protein of unknown function DUF1342; KEGG: slo:Shew_3442 protein of unknown function DUF1342; hypothetical protein complement(553082..553816) Shewanella halifaxensis HAW-EB4 5906236 YP_001672701.1 CDS coaE NC_010334.1 553825 554430 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(553825..554430) Shewanella halifaxensis HAW-EB4 5906233 YP_001672702.1 CDS Shal_0468 NC_010334.1 554459 555370 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: sbm:Shew185_3944 prepilin peptidase; prepilin peptidase complement(554459..555370) Shewanella halifaxensis HAW-EB4 5906234 YP_001672703.1 CDS Shal_0469 NC_010334.1 555448 556710 R PFAM: type II secretion system protein; KEGG: sfr:Sfri_3784 type II secretion system protein; type II secretion system protein complement(555448..556710) Shewanella halifaxensis HAW-EB4 5906216 YP_001672704.1 CDS Shal_0470 NC_010334.1 556756 558462 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: slo:Shew_3438 type IV-A pilus assembly ATPase PilB; type IV-A pilus assembly ATPase PilB complement(556756..558462) Shewanella halifaxensis HAW-EB4 5906217 YP_001672705.1 CDS Shal_0471 NC_010334.1 558537 558989 R KEGG: pha:PSHAa0384 prepilin peptidase dependent protein D; prepilin peptidase dependent protein D complement(558537..558989) Shewanella halifaxensis HAW-EB4 5906178 YP_001672706.1 CDS Shal_0472 NC_010334.1 559772 560656 R KEGG: shn:Shewana3_0422 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(559772..560656) Shewanella halifaxensis HAW-EB4 5906179 YP_001672707.1 CDS Shal_0473 NC_010334.1 560903 561445 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: slo:Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 560903..561445 Shewanella halifaxensis HAW-EB4 5905360 YP_001672708.1 CDS Shal_0474 NC_010334.1 561542 562393 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 561542..562393 Shewanella halifaxensis HAW-EB4 5905266 YP_001672709.1 CDS pdhR NC_010334.1 562753 563505 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 562753..563505 Shewanella halifaxensis HAW-EB4 5905267 YP_001672710.1 CDS aceE NC_010334.1 563572 566235 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 563572..566235 Shewanella halifaxensis HAW-EB4 5904355 YP_001672711.1 CDS Shal_0477 NC_010334.1 566248 567915 D KEGG: sfr:Sfri_3776 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 566248..567915 Shewanella halifaxensis HAW-EB4 5904356 YP_001672712.1 CDS Shal_0478 NC_010334.1 568136 569563 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 568136..569563 Shewanella halifaxensis HAW-EB4 5904424 YP_001672713.1 CDS Shal_0479 NC_010334.1 569720 574183 D KEGG: slo:Shew_3428 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 569720..574183 Shewanella halifaxensis HAW-EB4 5904425 YP_001672714.1 CDS Shal_0480 NC_010334.1 574277 576493 D PFAM: Patatin; surface antigen variable number repeat protein; KEGG: she:Shewmr4_0432 patatin; patatin 574277..576493 Shewanella halifaxensis HAW-EB4 5906138 YP_001672715.1 CDS Shal_0481 NC_010334.1 576654 577319 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(576654..577319) Shewanella halifaxensis HAW-EB4 5906469 YP_001672716.1 CDS Shal_0482 NC_010334.1 577723 580320 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 577723..580320 Shewanella halifaxensis HAW-EB4 5906470 YP_001672717.1 CDS Shal_0483 NC_010334.1 580452 580919 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(580452..580919) Shewanella halifaxensis HAW-EB4 5906545 YP_001672718.1 CDS hemE NC_010334.1 581451 582515 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 581451..582515 Shewanella halifaxensis HAW-EB4 5906546 YP_001672719.1 CDS Shal_0485 NC_010334.1 582852 585419 D KEGG: slo:Shew_3416 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 582852..585419 Shewanella halifaxensis HAW-EB4 5907000 YP_001672720.1 CDS Shal_0486 NC_010334.1 585409 585627 R KEGG: shn:Shewana3_0438 hypothetical protein; hypothetical protein complement(585409..585627) Shewanella halifaxensis HAW-EB4 5907001 YP_001672721.1 CDS Shal_0487 NC_010334.1 585995 587296 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(585995..587296) Shewanella halifaxensis HAW-EB4 5905087 YP_001672722.1 CDS purH NC_010334.1 587494 589083 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(587494..589083) Shewanella halifaxensis HAW-EB4 5904319 YP_001672723.1 CDS zntR NC_010334.1 589431 589946 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 589431..589946 Shewanella halifaxensis HAW-EB4 5904320 YP_001672724.1 CDS Shal_0490 NC_010334.1 589949 591298 D PFAM: permease; KEGG: slo:Shew_3410 permease; permease 589949..591298 Shewanella halifaxensis HAW-EB4 5904682 YP_001672725.1 CDS Shal_0491 NC_010334.1 591473 592141 D PFAM: DSBA oxidoreductase; KEGG: maq:Maqu_3568 DsbA oxidoreductase; DSBA oxidoreductase 591473..592141 Shewanella halifaxensis HAW-EB4 5904683 YP_001672726.1 CDS Shal_0492 NC_010334.1 592862 593443 D PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; molybdopterin oxidoreductase Fe4S4 region 592862..593443 Shewanella halifaxensis HAW-EB4 5904931 YP_001672727.1 CDS Shal_0493 NC_010334.1 593492 595879 D KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 593492..595879 Shewanella halifaxensis HAW-EB4 5903190 YP_001672728.1 CDS Shal_0494 NC_010334.1 595882 596784 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbm:Shew185_0101 formate dehydrogenase, beta subunit; formate dehydrogenase subunit beta 595882..596784 Shewanella halifaxensis HAW-EB4 5903191 YP_001672729.1 CDS Shal_0495 NC_010334.1 596790 597434 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_0104 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 596790..597434 Shewanella halifaxensis HAW-EB4 5904815 YP_001672730.1 CDS Shal_0496 NC_010334.1 597437 598417 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO_0104 fdhE protein; formate dehydrogenase accessory protein FdhE 597437..598417 Shewanella halifaxensis HAW-EB4 5904816 YP_001672731.1 CDS Shal_0497 NC_010334.1 598563 600011 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 598563..600011 Shewanella halifaxensis HAW-EB4 5905895 YP_001672732.1 CDS Shal_0498 NC_010334.1 600008 601924 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 3; KEGG: she:Shewmr4_0107 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 600008..601924 Shewanella halifaxensis HAW-EB4 5905896 YP_001672733.1 CDS Shal_0499 NC_010334.1 602282 603145 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 602282..603145 Shewanella halifaxensis HAW-EB4 5905691 YP_001672734.1 CDS Shal_0500 NC_010334.1 603217 604458 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sbm:Shew185_0107 protein of unknown function DUF395 YeeE/YedE; putative inner membrane protein 603217..604458 Shewanella halifaxensis HAW-EB4 5906987 YP_001672735.1 CDS Shal_0501 NC_010334.1 604534 604770 D PFAM: SirA family protein; KEGG: ypi:YpsIP31758_3809 hypothetical protein; hypothetical protein 604534..604770 Shewanella halifaxensis HAW-EB4 5906988 YP_001672736.1 CDS Shal_0502 NC_010334.1 604869 605597 R PFAM: protein of unknown function DUF28; KEGG: slo:Shew_3408 protein of unknown function DUF28; hypothetical protein complement(604869..605597) Shewanella halifaxensis HAW-EB4 5905922 YP_001672737.1 CDS Shal_0503 NC_010334.1 606401 608467 D KEGG: slo:Shew_2580 hypothetical protein; hypothetical protein 606401..608467 Shewanella halifaxensis HAW-EB4 5905923 YP_001672738.1 CDS Shal_0504 NC_010334.1 608594 609541 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_3844 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(608594..609541) Shewanella halifaxensis HAW-EB4 5905579 YP_001672739.1 CDS Shal_0505 NC_010334.1 609636 610709 D PFAM: secretion protein HlyD family protein; KEGG: sbm:Shew185_3843 secretion protein HlyD family protein; secretion protein HlyD family protein 609636..610709 Shewanella halifaxensis HAW-EB4 5905463 YP_001672740.1 CDS Shal_0506 NC_010334.1 610709 612298 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_0523 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 610709..612298 Shewanella halifaxensis HAW-EB4 5905464 YP_001672741.1 CDS Shal_0507 NC_010334.1 612455 612913 D PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_3397 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 612455..612913 Shewanella halifaxensis HAW-EB4 5903676 YP_001672742.1 CDS Shal_0508 NC_010334.1 612991 613242 R KEGG: slo:Shew_3396 hypothetical protein; hypothetical protein complement(612991..613242) Shewanella halifaxensis HAW-EB4 5903677 YP_001672743.1 CDS Shal_0509 NC_010334.1 613404 613520 D KEGG: sfr:Sfri_3496 hypothetical protein; hypothetical protein 613404..613520 Shewanella halifaxensis HAW-EB4 5904055 YP_001672744.1 CDS Shal_0510 NC_010334.1 613638 615047 D KEGG: sfr:Sfri_3495 phage integrase family protein; phage integrase family protein 613638..615047 Shewanella halifaxensis HAW-EB4 5904015 YP_001672745.1 CDS Shal_0511 NC_010334.1 615040 618558 D PFAM: integrase family protein; KEGG: sfr:Sfri_3494 phage integrase family protein; integrase family protein 615040..618558 Shewanella halifaxensis HAW-EB4 5904016 YP_001672746.1 CDS Shal_0512 NC_010334.1 618555 619193 D KEGG: sfr:Sfri_3493 hypothetical protein; hypothetical protein 618555..619193 Shewanella halifaxensis HAW-EB4 5903870 YP_001672747.1 CDS Shal_0513 NC_010334.1 619550 619957 R hypothetical protein complement(619550..619957) Shewanella halifaxensis HAW-EB4 5903871 YP_001672748.1 CDS Shal_0514 NC_010334.1 620220 621074 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: mms:mma_0801 RNA-directed DNA polymerase; RNA-directed DNA polymerase complement(620220..621074) Shewanella halifaxensis HAW-EB4 5903844 YP_001672749.1 CDS Shal_0515 NC_010334.1 621748 622620 R KEGG: reu:Reut_A0005 hypothetical protein; hypothetical protein complement(621748..622620) Shewanella halifaxensis HAW-EB4 5903845 YP_001672750.1 CDS Shal_0516 NC_010334.1 622764 624056 D KEGG: vei:Veis_1180 hypothetical protein; hypothetical protein 622764..624056 Shewanella halifaxensis HAW-EB4 5903774 YP_001672751.1 CDS Shal_0517 NC_010334.1 624205 625347 D KEGG: vei:Veis_1181 RNA-directed DNA polymerase; RNA-directed DNA polymerase 624205..625347 Shewanella halifaxensis HAW-EB4 5903737 YP_001672752.1 CDS Shal_0518 NC_010334.1 625443 625997 R KEGG: aav:Aave_1701 hypothetical protein; hypothetical protein complement(625443..625997) Shewanella halifaxensis HAW-EB4 5903738 YP_001672753.1 CDS Shal_0519 NC_010334.1 626708 626914 R PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein; XRE family transcriptional regulator complement(626708..626914) Shewanella halifaxensis HAW-EB4 5903811 YP_001672754.1 CDS Shal_0520 NC_010334.1 627047 627586 D KEGG: sfr:Sfri_3419 hypothetical protein; hypothetical protein 627047..627586 Shewanella halifaxensis HAW-EB4 5903812 YP_001672755.1 CDS Shal_0521 NC_010334.1 627591 629000 D PFAM: helicase domain protein; type III restriction protein res subunit; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit; type III restriction protein res subunit 627591..629000 Shewanella halifaxensis HAW-EB4 5904139 YP_001672756.1 CDS Shal_0522 NC_010334.1 629102 632233 R KEGG: chu:CHU_0040 ATPase involved in DNA repair; DNA repair ATPase-like protein complement(629102..632233) Shewanella halifaxensis HAW-EB4 5904140 YP_001672757.1 CDS Shal_0523 NC_010334.1 632223 632762 R hypothetical protein complement(632223..632762) Shewanella halifaxensis HAW-EB4 5904056 YP_001672758.1 CDS Shal_0524 NC_010334.1 632746 634089 R KEGG: sun:SUN_0730 hypothetical protein; hypothetical protein complement(632746..634089) Shewanella halifaxensis HAW-EB4 5903682 YP_001672759.1 CDS Shal_0525 NC_010334.1 634067 635122 R KEGG: plu:plu4347 hypothetical protein; hypothetical protein complement(634067..635122) Shewanella halifaxensis HAW-EB4 5903683 YP_001672760.1 CDS Shal_0526 NC_010334.1 635495 636106 R KEGG: vvy:VVA0312 hypothetical protein; hypothetical protein complement(635495..636106) Shewanella halifaxensis HAW-EB4 5903747 YP_001672761.1 CDS Shal_0527 NC_010334.1 636194 637411 R KEGG: lwe:lwe1072 hypothetical protein; hypothetical protein complement(636194..637411) Shewanella halifaxensis HAW-EB4 5903748 YP_001672762.1 CDS Shal_0528 NC_010334.1 637905 638684 D SMART: Elongator protein 3/MiaB/NifB; KEGG: sbl:Sbal_0486 radical SAM domain protein; elongator protein 3/MiaB/NifB 637905..638684 Shewanella halifaxensis HAW-EB4 5903760 YP_001672763.1 CDS Shal_0529 NC_010334.1 638700 639638 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0144 probable transcription regulator protein; LysR family transcriptional regulator complement(638700..639638) Shewanella halifaxensis HAW-EB4 5904787 YP_001672764.1 CDS Shal_0530 NC_010334.1 639635 640567 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_0420 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(639635..640567) Shewanella halifaxensis HAW-EB4 5904788 YP_001672765.1 CDS Shal_0531 NC_010334.1 641159 642199 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sfr:Sfri_2899 OmpA/MotB domain protein; OmpA domain-containing protein complement(641159..642199) Shewanella halifaxensis HAW-EB4 5905559 YP_001672766.1 CDS Shal_0532 NC_010334.1 642441 643277 R PFAM: MscS Mechanosensitive ion channel; KEGG: sbm:Shew185_0463 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(642441..643277) Shewanella halifaxensis HAW-EB4 5905560 YP_001672767.1 CDS Shal_0533 NC_010334.1 643489 643947 D KEGG: shw:Sputw3181_3632 hypothetical protein; hypothetical protein 643489..643947 Shewanella halifaxensis HAW-EB4 5905825 YP_001672768.1 CDS Shal_0534 NC_010334.1 644046 644261 R PFAM: protein of unknown function DUF465; KEGG: sbm:Shew185_0466 protein of unknown function DUF465; hypothetical protein complement(644046..644261) Shewanella halifaxensis HAW-EB4 5905826 YP_001672769.1 CDS Shal_0535 NC_010334.1 644757 645515 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 644757..645515 Shewanella halifaxensis HAW-EB4 5906735 YP_001672770.1 CDS Shal_0536 NC_010334.1 645593 646345 R KEGG: slo:Shew_3389 hypothetical protein; hypothetical protein complement(645593..646345) Shewanella halifaxensis HAW-EB4 5906783 YP_001672771.1 CDS Shal_0537 NC_010334.1 646741 647220 D PFAM: protein of unknown function DUF107; KEGG: shm:Shewmr7_0449 protein of unknown function DUF107; hypothetical protein 646741..647220 Shewanella halifaxensis HAW-EB4 5906784 YP_001672772.1 CDS Shal_0538 NC_010334.1 647249 648178 D PFAM: band 7 protein; KEGG: slo:Shew_3387 band 7 protein; hypothetical protein 647249..648178 Shewanella halifaxensis HAW-EB4 5903952 YP_001672773.1 CDS Shal_0539 NC_010334.1 648178 649116 D PFAM: band 7 protein; KEGG: slo:Shew_3386 band 7 protein; hypothetical protein 648178..649116 Shewanella halifaxensis HAW-EB4 5903953 YP_001672774.1 CDS Shal_0540 NC_010334.1 649449 649898 D PFAM: NUDIX hydrolase; KEGG: shn:Shewana3_0463 NUDIX hydrolase; NUDIX hydrolase 649449..649898 Shewanella halifaxensis HAW-EB4 5903896 YP_001672775.1 CDS Shal_0541 NC_010334.1 649940 652024 R KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(649940..652024) Shewanella halifaxensis HAW-EB4 5903897 YP_001672776.1 CDS Shal_0542 NC_010334.1 652389 652742 D PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1933 putative translation initiation inhibitor, YjgF family; endoribonuclease L-PSP 652389..652742 Shewanella halifaxensis HAW-EB4 5903813 YP_001672777.1 CDS uvrD NC_010334.1 652884 655049 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 652884..655049 Shewanella halifaxensis HAW-EB4 5904033 YP_001672778.1 CDS ubiA NC_010334.1 655192 656055 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 655192..656055 Shewanella halifaxensis HAW-EB4 5904034 YP_001672779.1 CDS Shal_0545 NC_010334.1 656167 657153 R PFAM: putative esterase; KEGG: sfr:Sfri_3395 hydrolase of the alpha/beta superfamily; putative esterase complement(656167..657153) Shewanella halifaxensis HAW-EB4 5904053 YP_001672780.1 CDS Shal_0546 NC_010334.1 657383 657961 R KEGG: slo:Shew_0343 hypothetical protein; hypothetical protein complement(657383..657961) Shewanella halifaxensis HAW-EB4 5904054 YP_001672781.1 CDS Shal_0547 NC_010334.1 658504 660033 D PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0344 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 658504..660033 Shewanella halifaxensis HAW-EB4 5903783 YP_001672782.1 CDS Shal_0548 NC_010334.1 660391 660975 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0345 redoxin domain protein; alkyl hydroperoxide reductase complement(660391..660975) Shewanella halifaxensis HAW-EB4 5903502 YP_001672783.1 CDS Shal_0549 NC_010334.1 660968 661414 R PFAM: cytochrome C biogenesis protein; KEGG: mms:mma_2804 cytochrome c-type biogenesis protein CycL; cytochrome C biogenesis protein complement(660968..661414) Shewanella halifaxensis HAW-EB4 5903503 YP_001672784.1 CDS Shal_0550 NC_010334.1 661411 663387 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO_0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(661411..663387) Shewanella halifaxensis HAW-EB4 5903516 YP_001672785.1 CDS Shal_0551 NC_010334.1 663943 665979 D KEGG: slo:Shew_0348 cytochrome c, putative; cytochrome c 663943..665979 Shewanella halifaxensis HAW-EB4 5903517 YP_001672786.1 CDS Shal_0552 NC_010334.1 666040 666468 D SMART: Rhodanese domain protein; KEGG: shw:Sputw3181_0578 rhodanese domain protein; rhodanese domain-containing protein 666040..666468 Shewanella halifaxensis HAW-EB4 5903546 YP_001672787.1 CDS Shal_0553 NC_010334.1 666506 667306 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 666506..667306 Shewanella halifaxensis HAW-EB4 5903547 YP_001672788.1 CDS Shal_0554 NC_010334.1 667341 668069 D KEGG: shn:Shewana3_0492 formate-dependent nitrite reductase, NrfG protein; cytochrome c biogenesis factor-like protein 667341..668069 Shewanella halifaxensis HAW-EB4 5903558 YP_001672789.1 CDS Shal_0555 NC_010334.1 668155 668862 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 668155..668862 Shewanella halifaxensis HAW-EB4 5903567 YP_001672790.1 CDS Shal_0556 NC_010334.1 668865 669812 D PFAM: Polysulphide reductase NrfD; KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 668865..669812 Shewanella halifaxensis HAW-EB4 5903568 YP_001672791.1 CDS Shal_0557 NC_010334.1 670161 670649 D PFAM: NosL family protein; KEGG: shm:Shewmr7_3536 NosL family protein; NosL family protein 670161..670649 Shewanella halifaxensis HAW-EB4 5903563 YP_001672792.1 CDS Shal_0558 NC_010334.1 670704 672062 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: shw:Sputw3181_0582 periplasmic copper-binding; periplasmic copper-binding protein 670704..672062 Shewanella halifaxensis HAW-EB4 5903564 YP_001672793.1 CDS Shal_0559 NC_010334.1 672062 673027 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 672062..673027 Shewanella halifaxensis HAW-EB4 5904474 YP_001672794.1 CDS Shal_0560 NC_010334.1 673029 673874 D KEGG: slo:Shew_0357 copper ABC transporter, permease protein; copper ABC transporter permease 673029..673874 Shewanella halifaxensis HAW-EB4 5904475 YP_001672795.1 CDS Shal_0561 NC_010334.1 674084 675367 D PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC 674084..675367 Shewanella halifaxensis HAW-EB4 5904372 YP_001672796.1 CDS Shal_0562 NC_010334.1 676135 676587 D hypothetical protein 676135..676587 Shewanella halifaxensis HAW-EB4 5905132 YP_001672797.1 CDS Shal_0563 NC_010334.1 676694 677131 D KEGG: hch:HCH_03398 hypothetical protein; hypothetical protein 676694..677131 Shewanella halifaxensis HAW-EB4 5905133 YP_001672798.1 CDS Shal_0564 NC_010334.1 677226 677543 D KEGG: fnu:FN1049 hypothetical protein; hypothetical protein 677226..677543 Shewanella halifaxensis HAW-EB4 5905599 YP_001672799.1 CDS Shal_0565 NC_010334.1 678248 678907 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_3142 transporter, LysE family; lysine exporter protein LysE/YggA complement(678248..678907) Shewanella halifaxensis HAW-EB4 5905600 YP_001672800.1 CDS Shal_0566 NC_010334.1 679313 682120 D hypothetical protein 679313..682120 Shewanella halifaxensis HAW-EB4 5903383 YP_001672801.1 CDS Shal_0567 NC_010334.1 682834 684864 D KEGG: slo:Shew_0348 cytochrome c, putative; cytochrome c 682834..684864 Shewanella halifaxensis HAW-EB4 5905650 YP_001672802.1 CDS Shal_0568 NC_010334.1 684889 685362 D SMART: Rhodanese domain protein; KEGG: slo:Shew_0349 rhodanese domain protein; rhodanese domain-containing protein 684889..685362 Shewanella halifaxensis HAW-EB4 5905651 YP_001672803.1 CDS Shal_0569 NC_010334.1 685413 686207 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 685413..686207 Shewanella halifaxensis HAW-EB4 5903358 YP_001672804.1 CDS Shal_0570 NC_010334.1 686325 687038 D KEGG: slo:Shew_0351 tetratricopeptide TPR_2 repeat protein; hypothetical protein 686325..687038 Shewanella halifaxensis HAW-EB4 5903359 YP_001672805.1 CDS Shal_0571 NC_010334.1 687100 687810 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 687100..687810 Shewanella halifaxensis HAW-EB4 5905916 YP_001672806.1 CDS Shal_0572 NC_010334.1 687813 688760 D PFAM: Polysulphide reductase NrfD; KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 687813..688760 Shewanella halifaxensis HAW-EB4 5905917 YP_001672807.1 CDS Shal_0573 NC_010334.1 688891 689421 D PFAM: NosL family protein; KEGG: sbm:Shew185_3871 NosL family protein; NosL family protein 688891..689421 Shewanella halifaxensis HAW-EB4 5906451 YP_001672808.1 CDS Shal_0574 NC_010334.1 689476 690795 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO_0486 copper ABC transporter, periplasmic copper-binding protein; periplasmic copper-binding protein 689476..690795 Shewanella halifaxensis HAW-EB4 5906437 YP_001672809.1 CDS Shal_0575 NC_010334.1 690888 691796 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 690888..691796 Shewanella halifaxensis HAW-EB4 5906438 YP_001672810.1 CDS Shal_0576 NC_010334.1 691798 692628 D PFAM: ABC-2 type transporter; KEGG: slo:Shew_0357 copper ABC transporter, permease protein; ABC-2 type transporter 691798..692628 Shewanella halifaxensis HAW-EB4 5906435 YP_001672811.1 CDS Shal_0577 NC_010334.1 692904 694187 D PFAM: transcriptional regulator domain protein; KEGG: shn:Shewana3_0499 transcriptional regulator, CadC; transcriptional regulator CadC 692904..694187 Shewanella halifaxensis HAW-EB4 5906436 YP_001672812.1 CDS Shal_0578 NC_010334.1 694732 695151 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 694732..695151 Shewanella halifaxensis HAW-EB4 5906255 YP_001672813.1 CDS Shal_0579 NC_010334.1 695169 696674 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 695169..696674 Shewanella halifaxensis HAW-EB4 5906256 YP_001672814.1 CDS rbsC NC_010334.1 696671 697645 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 696671..697645 Shewanella halifaxensis HAW-EB4 5906247 YP_001672815.1 CDS Shal_0581 NC_010334.1 697745 698644 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 697745..698644 Shewanella halifaxensis HAW-EB4 5906036 YP_001672816.1 CDS Shal_0582 NC_010334.1 698769 699686 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 698769..699686 Shewanella halifaxensis HAW-EB4 5906037 YP_001672817.1 CDS Shal_0583 NC_010334.1 699775 700779 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vco:VC0395_0006 ribose operon repressor; LacI family transcriptional regulator 699775..700779 Shewanella halifaxensis HAW-EB4 5905944 YP_001672818.1 CDS fre NC_010334.1 700936 701646 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(700936..701646) Shewanella halifaxensis HAW-EB4 5905945 YP_001672819.1 CDS Shal_0585 NC_010334.1 701758 703239 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: slo:Shew_0360 UbiD family decarboxylase; UbiD family decarboxylase complement(701758..703239) Shewanella halifaxensis HAW-EB4 5906362 YP_001672820.1 CDS Shal_0586 NC_010334.1 703462 704016 D KEGG: sfr:Sfri_3388 hypothetical protein; hypothetical protein 703462..704016 Shewanella halifaxensis HAW-EB4 5906139 YP_001672821.1 CDS Shal_0587 NC_010334.1 704349 704873 R PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_3606 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(704349..704873) Shewanella halifaxensis HAW-EB4 5906140 YP_001672822.1 CDS Shal_0588 NC_010334.1 704917 705501 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_2140 putative lipoprotein; redoxin domain-containing protein complement(704917..705501) Shewanella halifaxensis HAW-EB4 5903339 YP_001672823.1 CDS Shal_0589 NC_010334.1 705955 707157 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: ppr:PBPRA2465 putative tyrosine-specific transport protein; aromatic amino acid transporter 705955..707157 Shewanella halifaxensis HAW-EB4 5903340 YP_001672824.1 CDS Shal_0590 NC_010334.1 708503 709846 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 708503..709846 Shewanella halifaxensis HAW-EB4 5903637 YP_001672825.1 CDS Shal_0591 NC_010334.1 716675 717793 D PFAM: Choloylglycine hydrolase; KEGG: vfi:VFA0241 choloylglycine hydrolase; choloylglycine hydrolase 716675..717793 Shewanella halifaxensis HAW-EB4 5904769 YP_001672826.1 CDS Shal_0592 NC_010334.1 718448 719074 D PFAM: DSBA oxidoreductase; KEGG: pha:PSHAb0519 hypothetical protein; DSBA oxidoreductase 718448..719074 Shewanella halifaxensis HAW-EB4 5904620 YP_001672827.1 CDS Shal_0593 NC_010334.1 719078 719413 R hypothetical protein complement(719078..719413) Shewanella halifaxensis HAW-EB4 5904412 YP_001672828.1 CDS Shal_0594 NC_010334.1 719579 720241 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_0592 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(719579..720241) Shewanella halifaxensis HAW-EB4 5903317 YP_001672829.1 CDS Shal_0595 NC_010334.1 720297 720743 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vfi:VF2386 biotin carboxyl carrier protein of acetyl-CoA carboxylase; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(720297..720743) Shewanella halifaxensis HAW-EB4 5903318 YP_001672830.1 CDS Shal_0596 NC_010334.1 720753 721208 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(720753..721208) Shewanella halifaxensis HAW-EB4 5905984 YP_001672831.1 CDS Shal_0597 NC_010334.1 721358 721780 R PFAM: Class I peptide chain release factor; KEGG: shw:Sputw3181_0594 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein complement(721358..721780) Shewanella halifaxensis HAW-EB4 5905985 YP_001672832.1 CDS Shal_0598 NC_010334.1 721963 722334 D KEGG: shn:Shewana3_0513 hypothetical protein; hypothetical protein 721963..722334 Shewanella halifaxensis HAW-EB4 5906775 YP_001672833.1 CDS Shal_0599 NC_010334.1 722408 722584 D KEGG: sbl:Sbal_0473 hypothetical protein; hypothetical protein 722408..722584 Shewanella halifaxensis HAW-EB4 5906776 YP_001672834.1 CDS Shal_0600 NC_010334.1 722773 723177 D KEGG: slo:Shew_3359 hypothetical protein; hypothetical protein 722773..723177 Shewanella halifaxensis HAW-EB4 5906301 YP_001672835.1 CDS Shal_0601 NC_010334.1 723465 724784 D KEGG: slo:Shew_3358 outer membrane efflux family protein, putative; outer membrane efflux family protein 723465..724784 Shewanella halifaxensis HAW-EB4 5906719 YP_001672836.1 CDS Shal_0602 NC_010334.1 724795 726207 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_3357 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 724795..726207 Shewanella halifaxensis HAW-EB4 5906720 YP_001672837.1 CDS Shal_0603 NC_010334.1 726220 729444 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_3356 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 726220..729444 Shewanella halifaxensis HAW-EB4 5905648 YP_001672838.1 CDS mepA NC_010334.1 729845 730741 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 729845..730741 Shewanella halifaxensis HAW-EB4 5905649 YP_001672839.1 CDS Shal_0605 NC_010334.1 730938 731399 R PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3560 conserved hypothetical protein 22; hypothetical protein complement(730938..731399) Shewanella halifaxensis HAW-EB4 5905051 YP_001672840.1 CDS Shal_0606 NC_010334.1 731667 732728 D KEGG: slo:Shew_3350 hypothetical protein; hypothetical protein 731667..732728 Shewanella halifaxensis HAW-EB4 5905052 YP_001672841.1 CDS Shal_0607 NC_010334.1 732891 733484 D KEGG: slo:Shew_3349 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 732891..733484 Shewanella halifaxensis HAW-EB4 5904755 YP_001672842.1 CDS Shal_0608 NC_010334.1 733543 734481 D PFAM: pseudouridine synthase; KEGG: sbm:Shew185_0433 pseudouridine synthase; pseudouridine synthase 733543..734481 Shewanella halifaxensis HAW-EB4 5903416 YP_001672843.1 CDS Shal_0609 NC_010334.1 734718 736604 R KEGG: shn:Shewana3_3710 hypothetical protein; hypothetical protein complement(734718..736604) Shewanella halifaxensis HAW-EB4 5903417 YP_001672844.1 CDS Shal_0610 NC_010334.1 736706 737641 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: she:Shewmr4_3531 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 736706..737641 Shewanella halifaxensis HAW-EB4 5904096 YP_001672845.1 CDS Shal_0611 NC_010334.1 737694 738998 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3343 integral membrane sensor signal transduction histidine kinase; histidine kinase 737694..738998 Shewanella halifaxensis HAW-EB4 5904097 YP_001672846.1 CDS Shal_0612 NC_010334.1 738991 739545 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: sfr:Sfri_1844 response regulator receiver protein; two component Fis family transcriptional regulator 738991..739545 Shewanella halifaxensis HAW-EB4 5903976 YP_001672847.1 CDS Shal_0613 NC_010334.1 739707 740855 R PFAM: sulphate transporter; KEGG: slo:Shew_0508 xanthine/uracil/vitamin C permease; sulfate transporter complement(739707..740855) Shewanella halifaxensis HAW-EB4 5903977 YP_001672848.1 CDS Shal_0614 NC_010334.1 741254 742651 R KEGG: slo:Shew_0514 cytochrome c, putative; cytochrome c complement(741254..742651) Shewanella halifaxensis HAW-EB4 5904062 YP_001672849.1 CDS Shal_0615 NC_010334.1 742700 744412 R KEGG: slo:Shew_0515 hypothetical protein; hypothetical protein complement(742700..744412) Shewanella halifaxensis HAW-EB4 5904116 YP_001672850.1 CDS Shal_0616 NC_010334.1 744588 744914 R KEGG: shm:Shewmr7_0441 cytochrome c family protein; cytochrome c family protein complement(744588..744914) Shewanella halifaxensis HAW-EB4 5904117 YP_001672851.1 CDS Shal_0617 NC_010334.1 745325 746044 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shn:Shewana3_3687 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(745325..746044) Shewanella halifaxensis HAW-EB4 5904025 YP_001672852.1 CDS Shal_0618 NC_010334.1 746188 747102 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_4936 substrate-binding transcriptional regulator, LysR family; LysR family transcriptional regulator 746188..747102 Shewanella halifaxensis HAW-EB4 5904026 YP_001672853.1 CDS Shal_0619 NC_010334.1 747312 748505 D KEGG: slo:Shew_0517 putative plasmid transfer protein; putative plasmid transfer protein 747312..748505 Shewanella halifaxensis HAW-EB4 5903942 YP_001672854.1 CDS Shal_0620 NC_010334.1 748511 749242 R PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_3556 protein of unknown function DUF81; hypothetical protein complement(748511..749242) Shewanella halifaxensis HAW-EB4 5903943 YP_001672855.1 CDS Shal_0621 NC_010334.1 749421 749735 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(749421..749735) Shewanella halifaxensis HAW-EB4 5903872 YP_001672856.1 CDS Shal_0622 NC_010334.1 749947 751107 D KEGG: she:Shewmr4_3439 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase 749947..751107 Shewanella halifaxensis HAW-EB4 5904186 YP_001672857.1 CDS metL NC_010334.1 751123 753516 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 751123..753516 Shewanella halifaxensis HAW-EB4 5904187 YP_001672858.1 CDS metF NC_010334.1 753742 754632 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 753742..754632 Shewanella halifaxensis HAW-EB4 5904163 YP_001672859.1 CDS Shal_0625 NC_010334.1 754790 755176 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: aha:AHA_3760 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 754790..755176 Shewanella halifaxensis HAW-EB4 5904164 YP_001672860.1 CDS Shal_0626 NC_010334.1 755177 755440 D KEGG: she:Shewmr4_3430 hypothetical protein; hypothetical protein 755177..755440 Shewanella halifaxensis HAW-EB4 5904208 YP_001672861.1 CDS Shal_0627 NC_010334.1 755497 756474 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: she:Shewmr4_3427 protein of unknown function DUF6, transmembrane; hypothetical protein 755497..756474 Shewanella halifaxensis HAW-EB4 5904209 YP_001672862.1 CDS Shal_0628 NC_010334.1 756874 758751 R PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_0531 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(756874..758751) Shewanella halifaxensis HAW-EB4 5903780 YP_001672863.1 CDS Shal_0629 NC_010334.1 758988 759947 R PFAM: peptidase M28; KEGG: slo:Shew_0532 peptidase M28; peptidase M28 complement(758988..759947) Shewanella halifaxensis HAW-EB4 5904058 YP_001672864.1 CDS Shal_0630 NC_010334.1 760042 760308 R KEGG: shm:Shewmr7_0530 hypothetical protein; hypothetical protein complement(760042..760308) Shewanella halifaxensis HAW-EB4 5904059 YP_001672865.1 CDS Shal_0631 NC_010334.1 760362 763205 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: slo:Shew_0533 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(760362..763205) Shewanella halifaxensis HAW-EB4 5904089 YP_001672866.1 CDS Shal_0632 NC_010334.1 763472 764839 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0534 major facilitator superfamily MFS_1; major facilitator transporter 763472..764839 Shewanella halifaxensis HAW-EB4 5904090 YP_001672867.1 CDS Shal_0633 NC_010334.1 764872 765543 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: shw:Sputw3181_3534 single-strand binding protein; ssDNA-binding protein 764872..765543 Shewanella halifaxensis HAW-EB4 5904007 YP_001672868.1 CDS Shal_0634 NC_010334.1 765787 767454 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: ppr:PBPRA1995 putative transcriptional regulator; putative sigma-54 specific transcriptional regulator complement(765787..767454) Shewanella halifaxensis HAW-EB4 5904008 YP_001672869.1 CDS Shal_0635 NC_010334.1 767916 769103 D PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ppr:PBPRA1994 ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase family protein 767916..769103 Shewanella halifaxensis HAW-EB4 5904100 YP_001672870.1 CDS Shal_0636 NC_010334.1 769189 770403 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 769189..770403 Shewanella halifaxensis HAW-EB4 5904156 YP_001672871.1 CDS Shal_0637 NC_010334.1 770506 771717 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 770506..771717 Shewanella halifaxensis HAW-EB4 5904157 YP_001672872.1 CDS Shal_0638 NC_010334.1 771917 773317 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 771917..773317 Shewanella halifaxensis HAW-EB4 5903908 YP_001672873.1 CDS Shal_0639 NC_010334.1 773399 774328 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 773399..774328 Shewanella halifaxensis HAW-EB4 5903909 YP_001672874.1 CDS Shal_0640 NC_010334.1 775172 777910 R undetermined function; putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase complement(775172..777910) Shewanella halifaxensis HAW-EB4 5903712 YP_001672875.1 CDS Shal_0641 NC_010334.1 777913 782844 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpc:RPC_0704 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(777913..782844) Shewanella halifaxensis HAW-EB4 5903713 YP_001672876.1 CDS Shal_0642 NC_010334.1 784187 784576 D KEGG: sfr:Sfri_1916 hypothetical protein; hypothetical protein 784187..784576 Shewanella halifaxensis HAW-EB4 5903716 YP_001672877.1 CDS Shal_0643 NC_010334.1 784696 784998 D KEGG: saz:Sama_3345 hypothetical protein; hypothetical protein 784696..784998 Shewanella halifaxensis HAW-EB4 5905776 YP_001672878.1 CDS Shal_0644 NC_010334.1 785126 785332 D KEGG: dps:DP2311 hypothetical protein; hypothetical protein 785126..785332 Shewanella halifaxensis HAW-EB4 5905777 YP_001672879.1 CDS Shal_0645 NC_010334.1 785615 787207 R PFAM: biotin/lipoyl attachment domain-containing protein; protein of unknown function DUF182; KEGG: ppr:PBPRA1985 putative protein YqeB; hypothetical protein complement(785615..787207) Shewanella halifaxensis HAW-EB4 5906945 YP_001672880.1 CDS Shal_0646 NC_010334.1 787308 788333 R KEGG: ppr:PBPRA1986 hypothetical protein; hypothetical protein complement(787308..788333) Shewanella halifaxensis HAW-EB4 5906946 YP_001672881.1 CDS Shal_0647 NC_010334.1 788359 788955 D KEGG: ppr:PBPRA1987 hypotehtical YgfJ; hypothetical protein 788359..788955 Shewanella halifaxensis HAW-EB4 5906472 YP_001672882.1 CDS Shal_0648 NC_010334.1 789331 792435 D with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; putative selenate reductase subunit YgfK 789331..792435 Shewanella halifaxensis HAW-EB4 5906473 YP_001672883.1 CDS Shal_0649 NC_010334.1 792447 793775 D in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; putative chlorohydrolase/aminohydrolase 792447..793775 Shewanella halifaxensis HAW-EB4 5905690 YP_001672884.1 CDS Shal_0650 NC_010334.1 794613 795848 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1772 hypothetical endoribonuclease L-PSP; putative endoribonuclease L-PSP 794613..795848 Shewanella halifaxensis HAW-EB4 5905626 YP_001672885.1 CDS Shal_0651 NC_010334.1 796238 798439 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: ppr:PBPRA1941 hypothetical xanthine dehydrogenase; xanthine dehydrogenase 796238..798439 Shewanella halifaxensis HAW-EB4 5905627 YP_001672886.1 CDS Shal_0652 NC_010334.1 798423 798902 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: ppr:PBPRA1940 hypothetical CoxS, aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs; 2Fe-2S iron-sulfur cluster-binding domain-containing protein 798423..798902 Shewanella halifaxensis HAW-EB4 5905575 YP_001672887.1 CDS Shal_0653 NC_010334.1 798899 799741 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: ppr:PBPRA1939 hypothetical dehydrogenase; molybdopterin dehydrogenase FAD-binding 798899..799741 Shewanella halifaxensis HAW-EB4 5905576 YP_001672888.1 CDS pyrB NC_010334.1 799854 800786 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 799854..800786 Shewanella halifaxensis HAW-EB4 5906714 YP_001672889.1 CDS Shal_0655 NC_010334.1 800786 801244 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 800786..801244 Shewanella halifaxensis HAW-EB4 5906715 YP_001672890.1 CDS Shal_0656 NC_010334.1 801587 802381 D with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain; putative selenate reductase subunit YgfM 801587..802381 Shewanella halifaxensis HAW-EB4 5905591 YP_001672891.1 CDS Shal_0657 NC_010334.1 802384 805254 D with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration; putative selenate reductase subunit YgfN 802384..805254 Shewanella halifaxensis HAW-EB4 5904760 YP_001672892.1 CDS Shal_0658 NC_010334.1 805530 806936 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ppr:PBPRA1931 putative xanthine permease; uracil-xanthine permease 805530..806936 Shewanella halifaxensis HAW-EB4 5904761 YP_001672893.1 CDS Shal_0659 NC_010334.1 807095 808411 D Catalyzes the deamination of guanine; guanine deaminase 807095..808411 Shewanella halifaxensis HAW-EB4 5904990 YP_001672894.1 CDS Shal_0660 NC_010334.1 808636 810012 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ppr:PBPRA1929 putative xanthine/uracil permease; xanthine/uracil/vitamin C permease 808636..810012 Shewanella halifaxensis HAW-EB4 5904991 YP_001672895.1 CDS Shal_0661 NC_010334.1 810060 810812 D KEGG: slo:Shew_3389 hypothetical protein; hypothetical protein 810060..810812 Shewanella halifaxensis HAW-EB4 5903454 YP_001672896.1 CDS Shal_0662 NC_010334.1 811033 815406 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 811033..815406 Shewanella halifaxensis HAW-EB4 5903455 YP_001672897.1 CDS Shal_0663 NC_010334.1 816348 816764 D KEGG: slo:Shew_3273 hypothetical protein; hypothetical protein 816348..816764 Shewanella halifaxensis HAW-EB4 5906544 YP_001672898.1 CDS Shal_0664 NC_010334.1 816812 817843 R PFAM: Aldose 1-epimerase; KEGG: sbl:Sbal_3729 aldose 1-epimerase; aldose 1-epimerase complement(816812..817843) Shewanella halifaxensis HAW-EB4 5903149 YP_001672899.1 CDS Shal_0665 NC_010334.1 817855 819009 R TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: slo:Shew_3271 galactokinase; galactokinase complement(817855..819009) Shewanella halifaxensis HAW-EB4 5903150 YP_001672900.1 CDS Shal_0666 NC_010334.1 819345 820766 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: slo:Shew_3270 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter complement(819345..820766) Shewanella halifaxensis HAW-EB4 5906096 YP_001672901.1 CDS Shal_0667 NC_010334.1 820860 824093 R PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: slo:Shew_3269 beta-galactosidase; beta-galactosidase complement(820860..824093) Shewanella halifaxensis HAW-EB4 5906097 YP_001672902.1 CDS Shal_0668 NC_010334.1 824138 825091 R KEGG: slo:Shew_3268 hypothetical protein; hypothetical protein complement(824138..825091) Shewanella halifaxensis HAW-EB4 5905845 YP_001672903.1 CDS Shal_0669 NC_010334.1 825187 826953 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: slo:Shew_3267 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(825187..826953) Shewanella halifaxensis HAW-EB4 5905846 YP_001672904.1 CDS dipZ NC_010334.1 827160 828986 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(827160..828986) Shewanella halifaxensis HAW-EB4 5905655 YP_001672905.1 CDS Shal_0671 NC_010334.1 828983 829306 R PFAM: CutA1 divalent ion tolerance protein; KEGG: sbm:Shew185_0637 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein complement(828983..829306) Shewanella halifaxensis HAW-EB4 5905013 YP_001672906.1 CDS Shal_0672 NC_010334.1 829645 830280 D PFAM: FxsA cytoplasmic membrane protein; KEGG: slo:Shew_3264 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 829645..830280 Shewanella halifaxensis HAW-EB4 5905014 YP_001672907.1 CDS Shal_0673 NC_010334.1 830283 832127 R SMART: serine/threonine protein kinase; KEGG: slo:Shew_3263 serine/threonine protein kinase; serine/threonine protein kinase complement(830283..832127) Shewanella halifaxensis HAW-EB4 5903910 YP_001672908.1 CDS Shal_0674 NC_010334.1 832344 832685 D KEGG: slo:Shew_3262 hypothetical protein; hypothetical protein 832344..832685 Shewanella halifaxensis HAW-EB4 5903911 YP_001672909.1 CDS Shal_0675 NC_010334.1 832887 833546 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 832887..833546 Shewanella halifaxensis HAW-EB4 5906647 YP_001672910.1 CDS Shal_0676 NC_010334.1 833849 834898 R PFAM: porin Gram-negative type; KEGG: sfr:Sfri_0503 porin, gram-negative type; porin complement(833849..834898) Shewanella halifaxensis HAW-EB4 5906648 YP_001672911.1 CDS Shal_0677 NC_010334.1 835534 836595 R PFAM: porin Gram-negative type; KEGG: slo:Shew_3252 porin, gram-negative type; porin complement(835534..836595) Shewanella halifaxensis HAW-EB4 5905131 YP_001672912.1 CDS Shal_0678 NC_010334.1 836978 837799 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: slo:Shew_3251 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 836978..837799 Shewanella halifaxensis HAW-EB4 5906063 YP_001672913.1 CDS Shal_0679 NC_010334.1 837988 838605 D KEGG: slo:Shew_3248 hypothetical protein; hypothetical protein 837988..838605 Shewanella halifaxensis HAW-EB4 5906064 YP_001672914.1 CDS Shal_0680 NC_010334.1 838698 838832 R KEGG: saz:Sama_0549 hypothetical protein; hypothetical protein complement(838698..838832) Shewanella halifaxensis HAW-EB4 5906067 YP_001672915.1 CDS Shal_0681 NC_010334.1 839440 840051 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRA0992 hypothetical transcriptional regulator; AraC family transcriptional regulator complement(839440..840051) Shewanella halifaxensis HAW-EB4 5906098 YP_001672916.1 CDS Shal_0682 NC_010334.1 840811 841269 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(840811..841269) Shewanella halifaxensis HAW-EB4 5906149 YP_001672917.1 CDS pyrB NC_010334.1 841269 842201 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(841269..842201) Shewanella halifaxensis HAW-EB4 5906168 YP_001672918.1 CDS Shal_0684 NC_010334.1 842366 843673 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ppu:PP_3666 metabolite MFS transporter, MHS family; major facilitator transporter complement(842366..843673) Shewanella halifaxensis HAW-EB4 5906169 YP_001672919.1 CDS Shal_0685 NC_010334.1 843702 844643 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppr:PBPRA0990 hypothetical transporter; hypothetical protein complement(843702..844643) Shewanella halifaxensis HAW-EB4 5906266 YP_001672920.1 CDS Shal_0686 NC_010334.1 845414 846643 R PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1772 hypothetical endoribonuclease L-PSP; endoribonuclease L-PSP complement(845414..846643) Shewanella halifaxensis HAW-EB4 5906267 YP_001672921.1 CDS Shal_0687 NC_010334.1 846809 847813 R TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: vpa:VP2653 ornithine carbamoyltransferase; ornithine carbamoyltransferase complement(846809..847813) Shewanella halifaxensis HAW-EB4 5906336 YP_001672922.1 CDS Shal_0688 NC_010334.1 847898 848839 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(847898..848839) Shewanella halifaxensis HAW-EB4 5906337 YP_001672923.1 CDS Shal_0689 NC_010334.1 848891 850111 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(848891..850111) Shewanella halifaxensis HAW-EB4 5906377 YP_001672924.1 CDS Shal_0690 NC_010334.1 850408 851640 R PFAM: amidinotransferase; KEGG: ppr:PBPRA0993 hypothetical amidinotransferase family protein; non-specific serine/threonine protein kinase complement(850408..851640) Shewanella halifaxensis HAW-EB4 5906455 YP_001672925.1 CDS Shal_0691 NC_010334.1 852451 852969 R KEGG: shw:Sputw3181_2974 hypothetical protein; hypothetical protein complement(852451..852969) Shewanella halifaxensis HAW-EB4 5906456 YP_001672926.1 CDS Shal_0692 NC_010334.1 852974 855193 R PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: shw:Sputw3181_2975 aldehyde ferredoxin oxidoreductase; putative oxidoreductase complement(852974..855193) Shewanella halifaxensis HAW-EB4 5906510 YP_001672927.1 CDS Shal_0693 NC_010334.1 855223 855864 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbm:Shew185_3107 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(855223..855864) Shewanella halifaxensis HAW-EB4 5906511 YP_001672928.1 CDS Shal_0694 NC_010334.1 856318 856584 D hypothetical protein 856318..856584 Shewanella halifaxensis HAW-EB4 5906758 YP_001672929.1 CDS Shal_0695 NC_010334.1 857058 857441 D hypothetical protein 857058..857441 Shewanella halifaxensis HAW-EB4 5906759 YP_001672930.1 CDS Shal_0696 NC_010334.1 857501 858625 R PFAM: peptidase M50; KEGG: slo:Shew_3232 peptidase M50; peptidase M50 complement(857501..858625) Shewanella halifaxensis HAW-EB4 5906829 YP_001672931.1 CDS Shal_0697 NC_010334.1 858728 860392 R PFAM: protein of unknown function DUF342; KEGG: slo:Shew_3231 protein of unknown function DUF342; hypothetical protein complement(858728..860392) Shewanella halifaxensis HAW-EB4 5906871 YP_001672932.1 CDS Shal_0698 NC_010334.1 860578 861603 R PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase complement(860578..861603) Shewanella halifaxensis HAW-EB4 5906872 YP_001672933.1 CDS Shal_0699 NC_010334.1 861775 863085 R PFAM: Alkaline phosphatase; KEGG: shn:Shewana3_3446 alkaline phosphatase; alkaline phosphatase complement(861775..863085) Shewanella halifaxensis HAW-EB4 5906930 YP_001672934.1 CDS Shal_0700 NC_010334.1 863100 864053 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(863100..864053) Shewanella halifaxensis HAW-EB4 5906931 YP_001672935.1 CDS Shal_0701 NC_010334.1 864198 864929 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(864198..864929) Shewanella halifaxensis HAW-EB4 5906947 YP_001672936.1 CDS Shal_0702 NC_010334.1 864943 865686 R PFAM: Endonuclease I; KEGG: slo:Shew_3223 deoxyribonuclease I; deoxyribonuclease I complement(864943..865686) Shewanella halifaxensis HAW-EB4 5906948 YP_001672937.1 CDS Shal_0703 NC_010334.1 865843 866427 R PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: slo:Shew_3222 protein of unknown function DUF335, SprT; hypothetical protein complement(865843..866427) Shewanella halifaxensis HAW-EB4 5906970 YP_001672938.1 CDS Shal_0704 NC_010334.1 866743 867903 R KEGG: slo:Shew_3221 hypothetical protein; hypothetical protein complement(866743..867903) Shewanella halifaxensis HAW-EB4 5903239 YP_001672939.1 CDS Shal_0705 NC_010334.1 868115 869026 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3219 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(868115..869026) Shewanella halifaxensis HAW-EB4 5903240 YP_001672940.1 CDS Shal_0706 NC_010334.1 869149 873702 D PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 869149..873702 Shewanella halifaxensis HAW-EB4 5906032 YP_001672941.1 CDS Shal_0707 NC_010334.1 873852 875096 R PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0960 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(873852..875096) Shewanella halifaxensis HAW-EB4 5906033 YP_001672942.1 CDS Shal_0708 NC_010334.1 875199 877790 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: slo:Shew_3215 ATPase, P-type (transporting), HAD superfamily, subfamily IC; HAD superfamily P-type ATPase complement(875199..877790) Shewanella halifaxensis HAW-EB4 5906040 YP_001672943.1 CDS Shal_0709 NC_010334.1 877924 878826 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_3435 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(877924..878826) Shewanella halifaxensis HAW-EB4 5906041 YP_001672944.1 CDS Shal_0710 NC_010334.1 879354 879683 R KEGG: sdn:Sden_0845 hypothetical protein; hypothetical protein complement(879354..879683) Shewanella halifaxensis HAW-EB4 5906054 YP_001672945.1 CDS Shal_0711 NC_010334.1 879892 880776 D KEGG: sfr:Sfri_2734 hypothetical protein; hypothetical protein 879892..880776 Shewanella halifaxensis HAW-EB4 5906257 YP_001672946.1 CDS Shal_0712 NC_010334.1 881146 881571 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: slo:Shew_3209 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit NapB complement(881146..881571) Shewanella halifaxensis HAW-EB4 5906258 YP_001672947.1 CDS napH NC_010334.1 881568 882476 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(881568..882476) Shewanella halifaxensis HAW-EB4 5906493 YP_001672948.1 CDS napG NC_010334.1 882473 883207 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(882473..883207) Shewanella halifaxensis HAW-EB4 5906494 YP_001672949.1 CDS Shal_0715 NC_010334.1 883268 885748 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(883268..885748) Shewanella halifaxensis HAW-EB4 5906601 YP_001672950.1 CDS Shal_0716 NC_010334.1 885738 886013 R PFAM: NapD family protein; KEGG: slo:Shew_3205 NapD family protein; NapD family protein complement(885738..886013) Shewanella halifaxensis HAW-EB4 5906602 YP_001672951.1 CDS Shal_0717 NC_010334.1 886374 887474 R KEGG: shn:Shewana3_3423 hypothetical protein; hypothetical protein complement(886374..887474) Shewanella halifaxensis HAW-EB4 5906873 YP_001672952.1 CDS Shal_0718 NC_010334.1 887471 889999 R PFAM: protein of unknown function DUF214; KEGG: sbm:Shew185_0832 protein of unknown function DUF214; hypothetical protein complement(887471..889999) Shewanella halifaxensis HAW-EB4 5906885 YP_001672953.1 CDS Shal_0719 NC_010334.1 889992 890660 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbm:Shew185_0833 ABC transporter related; ABC transporter-like protein complement(889992..890660) Shewanella halifaxensis HAW-EB4 5906886 YP_001672954.1 CDS Shal_0720 NC_010334.1 890984 896269 D KEGG: slo:Shew_3200 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 890984..896269 Shewanella halifaxensis HAW-EB4 5906919 YP_001672955.1 CDS Shal_0721 NC_010334.1 896374 897393 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: saz:Sama_2951 response regulator receiver protein; response regulator receiver modulated metal dependent phosphohydrolase 896374..897393 Shewanella halifaxensis HAW-EB4 5906920 YP_001672956.1 CDS Shal_0722 NC_010334.1 897471 898442 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: slo:Shew_3198 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(897471..898442) Shewanella halifaxensis HAW-EB4 5906921 YP_001672957.1 CDS Shal_0723 NC_010334.1 898752 899981 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(898752..899981) Shewanella halifaxensis HAW-EB4 5906922 YP_001672958.1 CDS Shal_0724 NC_010334.1 900217 900852 D KEGG: slo:Shew_3195 hypothetical protein; hypothetical protein 900217..900852 Shewanella halifaxensis HAW-EB4 5906940 YP_001672959.1 CDS Shal_0725 NC_010334.1 901424 902650 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: vfi:VFA0967 nucleoside permease NupC; Na+ dependent nucleoside transporter 901424..902650 Shewanella halifaxensis HAW-EB4 5905172 YP_001672960.1 CDS Shal_0726 NC_010334.1 902749 903459 D TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: msu:MS1899 purine-nucleoside phosphorylase; purine nucleoside phosphorylase 902749..903459 Shewanella halifaxensis HAW-EB4 5905173 YP_001672961.1 CDS Shal_0727 NC_010334.1 903883 904320 D PFAM: thioesterase superfamily protein; KEGG: slo:Shew_3192 uncharacterized domain 1 protein; thioesterase superfamily protein 903883..904320 Shewanella halifaxensis HAW-EB4 5906613 YP_001672962.1 CDS Shal_0728 NC_010334.1 904539 904793 D KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 904539..904793 Shewanella halifaxensis HAW-EB4 5906614 YP_001672963.1 CDS Shal_0729 NC_010334.1 905314 906780 D PFAM: Catalase domain protein; KEGG: slo:Shew_3190 catalase; catalase 905314..906780 Shewanella halifaxensis HAW-EB4 5904966 YP_001672964.1 CDS Shal_0730 NC_010334.1 906906 907460 R PFAM: protein of unknown function UPF0016; KEGG: son:SO_1071 hypothetical protein; hypothetical protein complement(906906..907460) Shewanella halifaxensis HAW-EB4 5904967 YP_001672965.1 CDS Shal_0731 NC_010334.1 908138 909337 D PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: slo:Shew_3188 aromatic amino acid permease; aromatic amino acid permease 908138..909337 Shewanella halifaxensis HAW-EB4 5904899 YP_001672966.1 CDS Shal_0732 NC_010334.1 909643 911799 D KEGG: sfr:Sfri_0573 hypothetical protein; hypothetical protein 909643..911799 Shewanella halifaxensis HAW-EB4 5905694 YP_001672967.1 CDS Shal_0733 NC_010334.1 912015 912749 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; pseudouridine synthase complement(912015..912749) Shewanella halifaxensis HAW-EB4 5905695 YP_001672968.1 CDS Shal_0734 NC_010334.1 912757 913473 R KEGG: slo:Shew_3179 hypothetical protein; hypothetical protein complement(912757..913473) Shewanella halifaxensis HAW-EB4 5905717 YP_001672969.1 CDS Shal_0735 NC_010334.1 913630 915048 R PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_3178 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(913630..915048) Shewanella halifaxensis HAW-EB4 5905718 YP_001672970.1 CDS Shal_0736 NC_010334.1 915464 915988 D KEGG: sbl:Sbal_1340 hypothetical protein; hypothetical protein 915464..915988 Shewanella halifaxensis HAW-EB4 5905758 YP_001672971.1 CDS Shal_0737 NC_010334.1 916105 917385 D KEGG: shw:Sputw3181_3244 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; O-acetylhomoserine/O-acetylserine sulfhydrylase 916105..917385 Shewanella halifaxensis HAW-EB4 5905759 YP_001672972.1 CDS Shal_0738 NC_010334.1 917794 919653 D KEGG: sfr:Sfri_1337 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 917794..919653 Shewanella halifaxensis HAW-EB4 5905594 YP_001672973.1 CDS Shal_0739 NC_010334.1 919880 921061 D KEGG: sbm:Shew185_1620 porin gram-negative type; porin 919880..921061 Shewanella halifaxensis HAW-EB4 5903019 YP_001672974.1 CDS Shal_0740 NC_010334.1 921143 921853 R PFAM: protein of unknown function DUF541; KEGG: shn:Shewana3_3626 protein of unknown function DUF541; hypothetical protein complement(921143..921853) Shewanella halifaxensis HAW-EB4 5903020 YP_001672975.1 CDS Shal_0741 NC_010334.1 921968 922639 R KEGG: ter:Tery_4461 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase complement(921968..922639) Shewanella halifaxensis HAW-EB4 5905484 YP_001672976.1 CDS Shal_0742 NC_010334.1 922752 924068 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(922752..924068) Shewanella halifaxensis HAW-EB4 5905485 YP_001672977.1 CDS Shal_0743 NC_010334.1 924411 925796 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: slo:Shew_3144 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 924411..925796 Shewanella halifaxensis HAW-EB4 5905555 YP_001672978.1 CDS Shal_0744 NC_010334.1 925803 926456 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 925803..926456 Shewanella halifaxensis HAW-EB4 5905556 YP_001672979.1 CDS Shal_0745 NC_010334.1 926422 926997 D KEGG: slo:Shew_3142 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 926422..926997 Shewanella halifaxensis HAW-EB4 5905431 YP_001672980.1 CDS Shal_0746 NC_010334.1 927134 928078 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3141 ABC transporter-related protein; ABC transporter-like protein 927134..928078 Shewanella halifaxensis HAW-EB4 5904625 YP_001672981.1 CDS Shal_0747 NC_010334.1 928075 928851 D PFAM: ABC-2 type transporter; KEGG: slo:Shew_3140 ABC-2 type transporter; ABC-2 type transporter 928075..928851 Shewanella halifaxensis HAW-EB4 5904626 YP_001672982.1 CDS Shal_0748 NC_010334.1 929052 929570 R KEGG: shn:Shewana3_3410 hypothetical protein; hypothetical protein complement(929052..929570) Shewanella halifaxensis HAW-EB4 5905461 YP_001672983.1 CDS panC NC_010334.1 929843 930694 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(929843..930694) Shewanella halifaxensis HAW-EB4 5905462 YP_001672984.1 CDS panB NC_010334.1 930758 931552 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(930758..931552) Shewanella halifaxensis HAW-EB4 5905472 YP_001672985.1 CDS Shal_0751 NC_010334.1 931688 932182 R KEGG: shm:Shewmr7_3295 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(931688..932182) Shewanella halifaxensis HAW-EB4 5905473 YP_001672986.1 CDS Shal_0752 NC_010334.1 932182 933474 R KEGG: slo:Shew_3131 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase complement(932182..933474) Shewanella halifaxensis HAW-EB4 5905453 YP_001672987.1 CDS Shal_0753 NC_010334.1 933655 934533 R PFAM: glutamyl-tRNA synthetase class Ic; KEGG: son:SO_0873 glutamyl-tRNA synthetase domain protein; glutamate--tRNA ligase complement(933655..934533) Shewanella halifaxensis HAW-EB4 5905070 YP_001672988.1 CDS Shal_0754 NC_010334.1 934588 935031 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: slo:Shew_3129 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator complement(934588..935031) Shewanella halifaxensis HAW-EB4 5905071 YP_001672989.1 CDS Shal_0755 NC_010334.1 935190 935894 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(935190..935894) Shewanella halifaxensis HAW-EB4 5905274 YP_001672990.1 CDS Shal_0756 NC_010334.1 936167 937444 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 936167..937444 Shewanella halifaxensis HAW-EB4 5905275 YP_001672991.1 CDS Shal_0757 NC_010334.1 937614 938609 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shn:Shewana3_0468 putative transcriptional regulator, CadC; transcriptional regulator CadC 937614..938609 Shewanella halifaxensis HAW-EB4 5905140 YP_001672992.1 CDS Shal_0758 NC_010334.1 938887 939198 R KEGG: pin:Ping_1759 hypothetical protein; hypothetical protein complement(938887..939198) Shewanella halifaxensis HAW-EB4 5905141 YP_001672993.1 CDS Shal_0759 NC_010334.1 939265 939798 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pin:Ping_1760 2'-5' RNA ligase; 2'-5' RNA ligase complement(939265..939798) Shewanella halifaxensis HAW-EB4 5905150 YP_001672994.1 CDS Shal_0760 NC_010334.1 939949 942486 D KEGG: spc:Sputcn32_0655 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 939949..942486 Shewanella halifaxensis HAW-EB4 5905121 YP_001672995.1 CDS Shal_0761 NC_010334.1 942511 944871 D KEGG: slo:Shew_3123 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 942511..944871 Shewanella halifaxensis HAW-EB4 5905122 YP_001672996.1 CDS Shal_0762 NC_010334.1 944864 945364 D KEGG: sdn:Sden_0673 hypothetical protein; hypothetical protein 944864..945364 Shewanella halifaxensis HAW-EB4 5904797 YP_001672997.1 CDS Shal_0763 NC_010334.1 945475 946662 R PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_0980 probable MFS transporter; sugar efflux transporter complement(945475..946662) Shewanella halifaxensis HAW-EB4 5904798 YP_001672998.1 CDS Shal_0764 NC_010334.1 947171 947608 R PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1378 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(947171..947608) Shewanella halifaxensis HAW-EB4 5904933 YP_001672999.1 CDS Shal_0765 NC_010334.1 947867 948619 R hypothetical protein complement(947867..948619) Shewanella halifaxensis HAW-EB4 5904934 YP_001673000.1 CDS Shal_0766 NC_010334.1 949200 951389 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_3399 TonB-dependent receptor; TonB-dependent receptor complement(949200..951389) Shewanella halifaxensis HAW-EB4 5904941 YP_001673001.1 CDS Shal_0767 NC_010334.1 951636 952340 D KEGG: shn:Shewana3_0631 hypothetical protein; hypothetical protein 951636..952340 Shewanella halifaxensis HAW-EB4 5903037 YP_001673002.1 CDS Shal_0768 NC_010334.1 953051 954421 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: slo:Shew_0496 amino acid carrier protein; amino acid carrier protein 953051..954421 Shewanella halifaxensis HAW-EB4 5903038 YP_001673003.1 CDS Shal_0769 NC_010334.1 954517 954771 R hypothetical protein complement(954517..954771) Shewanella halifaxensis HAW-EB4 5902778 YP_001673004.1 CDS Shal_0770 NC_010334.1 954866 958555 D KEGG: slo:Shew_3118 hypothetical protein; hypothetical protein 954866..958555 Shewanella halifaxensis HAW-EB4 5902779 YP_001673005.1 CDS Shal_0771 NC_010334.1 958555 959208 D KEGG: sfr:Sfri_0526 hypothetical protein; hypothetical protein 958555..959208 Shewanella halifaxensis HAW-EB4 5903730 YP_001673006.1 CDS Shal_0772 NC_010334.1 959210 960430 D KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein 959210..960430 Shewanella halifaxensis HAW-EB4 5903925 YP_001673007.1 CDS Shal_0773 NC_010334.1 960923 962179 D PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_3115 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 960923..962179 Shewanella halifaxensis HAW-EB4 5903926 YP_001673008.1 CDS Shal_0774 NC_010334.1 962283 963665 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_3688 two component, sigma54 specific, transcriptional regulator, fis family protein; Fis family two component sigma54 specific transcriptional regulator complement(962283..963665) Shewanella halifaxensis HAW-EB4 5903680 YP_001673009.1 CDS Shal_0775 NC_010334.1 963769 965796 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_3113 histidine kinase; histidine kinase complement(963769..965796) Shewanella halifaxensis HAW-EB4 5903681 YP_001673010.1 CDS Shal_0776 NC_010334.1 966231 968021 D KEGG: slo:Shew_3112 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 966231..968021 Shewanella halifaxensis HAW-EB4 5903424 YP_001673011.1 CDS Shal_0777 NC_010334.1 968629 969606 D PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 968629..969606 Shewanella halifaxensis HAW-EB4 5903425 YP_001673012.1 CDS Shal_0778 NC_010334.1 970624 971628 D PFAM: basic membrane lipoprotein; KEGG: pin:Ping_1297 basic membrane lipoprotein; basic membrane lipoprotein 970624..971628 Shewanella halifaxensis HAW-EB4 5902937 YP_001673013.1 CDS Shal_0779 NC_010334.1 971770 973359 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pin:Ping_1298 ABC transporter ATP-binding protein; ABC transporter-like protein 971770..973359 Shewanella halifaxensis HAW-EB4 5904154 YP_001673014.1 CDS Shal_0780 NC_010334.1 973356 974486 D PFAM: inner-membrane translocator; KEGG: pin:Ping_1299 ABC transporter inner-membrane translocator; inner-membrane translocator 973356..974486 Shewanella halifaxensis HAW-EB4 5904155 YP_001673015.1 CDS Shal_0781 NC_010334.1 974490 975455 D PFAM: inner-membrane translocator; KEGG: pin:Ping_1300 ABC sugar transporter inner membrane translocator; inner-membrane translocator 974490..975455 Shewanella halifaxensis HAW-EB4 5903075 YP_001673016.1 CDS Shal_0782 NC_010334.1 976092 976871 D KEGG: sde:Sde_2333 hypothetical protein; hypothetical protein 976092..976871 Shewanella halifaxensis HAW-EB4 5903076 YP_001673017.1 CDS Shal_0783 NC_010334.1 976947 977543 D KEGG: vpa:VP1852 hypothetical protein; hypothetical protein 976947..977543 Shewanella halifaxensis HAW-EB4 5902874 YP_001673018.1 CDS Shal_0784 NC_010334.1 978116 979105 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(978116..979105) Shewanella halifaxensis HAW-EB4 5902875 YP_001673019.1 CDS Shal_0785 NC_010334.1 979344 981590 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: slo:Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 979344..981590 Shewanella halifaxensis HAW-EB4 5903093 YP_001673020.1 CDS Shal_0786 NC_010334.1 982020 982736 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0777 two component transcriptional regulator, winged helix family; two-component response regulator complement(982020..982736) Shewanella halifaxensis HAW-EB4 5902799 YP_001673021.1 CDS Shal_0787 NC_010334.1 983297 983725 D KEGG: slo:Shew_0778 hypothetical protein; hypothetical protein 983297..983725 Shewanella halifaxensis HAW-EB4 5902800 YP_001673022.1 CDS Shal_0788 NC_010334.1 984154 985539 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 984154..985539 Shewanella halifaxensis HAW-EB4 5903456 YP_001673023.1 CDS Shal_0789 NC_010334.1 985596 986702 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: she:Shewmr4_0654 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 985596..986702 Shewanella halifaxensis HAW-EB4 5903457 YP_001673024.1 CDS Shal_0790 NC_010334.1 986773 987234 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(986773..987234) Shewanella halifaxensis HAW-EB4 5903065 YP_001673025.1 CDS Shal_0791 NC_010334.1 987616 988293 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridine synthase complement(987616..988293) Shewanella halifaxensis HAW-EB4 5903066 YP_001673026.1 CDS Shal_0792 NC_010334.1 988407 988697 R KEGG: sbm:Shew185_3502 hypothetical protein; hypothetical protein complement(988407..988697) Shewanella halifaxensis HAW-EB4 5902599 YP_001673027.1 CDS Shal_0793 NC_010334.1 988737 989285 R PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: shn:Shewana3_3316 methyltransferase type 12; type 12 methyltransferase complement(988737..989285) Shewanella halifaxensis HAW-EB4 5902661 YP_001673028.1 CDS Shal_0794 NC_010334.1 989257 989667 R KEGG: slo:Shew_0786 hypothetical protein; hypothetical protein complement(989257..989667) Shewanella halifaxensis HAW-EB4 5902662 YP_001673029.1 CDS Shal_0795 NC_010334.1 990118 991107 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: slo:Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 990118..991107 Shewanella halifaxensis HAW-EB4 5902733 YP_001673030.1 CDS Shal_0796 NC_010334.1 991312 992049 D PFAM: dienelactone hydrolase; KEGG: sfr:Sfri_0519 dienelactone hydrolase; dienelactone hydrolase 991312..992049 Shewanella halifaxensis HAW-EB4 5902734 YP_001673031.1 CDS Shal_0797 NC_010334.1 992184 992708 R KEGG: she:Shewmr4_0805 hypothetical protein; hypothetical protein complement(992184..992708) Shewanella halifaxensis HAW-EB4 5902827 YP_001673032.1 CDS Shal_0798 NC_010334.1 993006 993749 D KEGG: slo:Shew_0791 spermine synthase; spermine synthase 993006..993749 Shewanella halifaxensis HAW-EB4 5902828 YP_001673033.1 CDS Shal_0799 NC_010334.1 994152 994721 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfr:Sfri_0522 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 994152..994721 Shewanella halifaxensis HAW-EB4 5902839 YP_001673034.1 CDS Shal_0800 NC_010334.1 995018 996592 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 995018..996592 Shewanella halifaxensis HAW-EB4 5902923 YP_001673035.1 CDS Shal_0801 NC_010334.1 996660 997784 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0794 diguanylate cyclase; diguanylate cyclase 996660..997784 Shewanella halifaxensis HAW-EB4 5902924 YP_001673036.1 CDS Shal_0802 NC_010334.1 997867 998064 R KEGG: slo:Shew_0796 hypothetical protein; hypothetical protein complement(997867..998064) Shewanella halifaxensis HAW-EB4 5902647 YP_001673037.1 CDS Shal_0803 NC_010334.1 998700 1000124 R KEGG: slo:Shew_0797 hypothetical protein; hypothetical protein complement(998700..1000124) Shewanella halifaxensis HAW-EB4 5902648 YP_001673038.1 CDS Shal_0804 NC_010334.1 1000459 1000875 R KEGG: slo:Shew_0798 hypothetical protein; hypothetical protein complement(1000459..1000875) Shewanella halifaxensis HAW-EB4 5902970 YP_001673039.1 CDS Shal_0805 NC_010334.1 1001115 1002290 D PFAM: FAD dependent oxidoreductase; KEGG: sbm:Shew185_3497 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1001115..1002290 Shewanella halifaxensis HAW-EB4 5902971 YP_001673040.1 CDS Shal_0806 NC_010334.1 1002450 1003664 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sdn:Sden_3160 chromate transporter; chromate transporter 1002450..1003664 Shewanella halifaxensis HAW-EB4 5903016 YP_001673041.1 CDS Shal_0807 NC_010334.1 1003743 1008068 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(1003743..1008068) Shewanella halifaxensis HAW-EB4 5902979 YP_001673042.1 CDS Shal_0808 NC_010334.1 1008373 1009365 R PFAM: pentapeptide repeat protein; Ion transport 2 domain protein; KEGG: slo:Shew_0810 ion transport 2 domain protein; Ion transport 2 domain-containing protein complement(1008373..1009365) Shewanella halifaxensis HAW-EB4 5902980 YP_001673043.1 CDS Shal_0809 NC_010334.1 1009893 1010774 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: slo:Shew_0811 peptide chain release factor 2; peptide chain release factor 2 1009893..1010774 Shewanella halifaxensis HAW-EB4 5902616 YP_001673044.1 CDS lysS NC_010334.1 1010787 1012292 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1010787..1012292 Shewanella halifaxensis HAW-EB4 5902617 YP_001673045.1 CDS Shal_0811 NC_010334.1 1012995 1015454 D KEGG: slo:Shew_0813 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1012995..1015454 Shewanella halifaxensis HAW-EB4 5902919 YP_001673046.1 CDS Shal_0812 NC_010334.1 1015500 1016111 R PFAM: pseudouridine synthase; KEGG: cps:CPS_1154 RNA pseudouridine synthase family protein; pseudouridine synthase complement(1015500..1016111) Shewanella halifaxensis HAW-EB4 5902920 YP_001673047.1 CDS Shal_0813 NC_010334.1 1016292 1017083 D TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: slo:Shew_0815 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 1016292..1017083 Shewanella halifaxensis HAW-EB4 5903265 YP_001673048.1 CDS Shal_0814 NC_010334.1 1017318 1017989 D PFAM: nitroreductase; KEGG: sfr:Sfri_3203 nitroreductase; nitroreductase 1017318..1017989 Shewanella halifaxensis HAW-EB4 5902597 YP_001673049.1 CDS Shal_0815 NC_010334.1 1018054 1018371 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: mbu:Mbur_1476 cupin family protein; cupin 1018054..1018371 Shewanella halifaxensis HAW-EB4 5902598 YP_001673050.1 CDS Shal_0816 NC_010334.1 1018503 1020452 D PFAM: peptidase U32; KEGG: sbl:Sbal_0734 peptidase U32; peptidase U32 1018503..1020452 Shewanella halifaxensis HAW-EB4 5902737 YP_001673051.1 CDS Shal_0817 NC_010334.1 1020533 1020907 D PFAM: protein of unknown function DUF1696; KEGG: slo:Shew_0819 protein of unknown function DUF1696; hypothetical protein 1020533..1020907 Shewanella halifaxensis HAW-EB4 5902738 YP_001673052.1 CDS Shal_0818 NC_010334.1 1020960 1021406 R PFAM: Fe-S metabolism associated SufE; KEGG: shn:Shewana3_0807 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(1020960..1021406) Shewanella halifaxensis HAW-EB4 5902842 YP_001673053.1 CDS Shal_0819 NC_010334.1 1021720 1022931 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: son:SO_3789 aminotransferase, class V; SufS subfamily cysteine desulfurase complement(1021720..1022931) Shewanella halifaxensis HAW-EB4 5902843 YP_001673054.1 CDS Shal_0820 NC_010334.1 1023028 1024071 R PFAM: aldo/keto reductase; KEGG: slo:Shew_0736 aldo/keto reductase; aldo/keto reductase complement(1023028..1024071) Shewanella halifaxensis HAW-EB4 5902864 YP_001673055.1 CDS Shal_0821 NC_010334.1 1024177 1025118 R PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: slo:Shew_0737 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator complement(1024177..1025118) Shewanella halifaxensis HAW-EB4 5904222 YP_001673056.1 CDS Shal_0822 NC_010334.1 1025211 1025750 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(1025211..1025750) Shewanella halifaxensis HAW-EB4 5904223 YP_001673057.1 CDS Shal_0823 NC_010334.1 1026307 1027593 D PFAM: aromatic amino acid permease; KEGG: shn:Shewana3_3365 serine transporter, putative; aromatic amino acid permease 1026307..1027593 Shewanella halifaxensis HAW-EB4 5904329 YP_001673058.1 CDS Shal_0824 NC_010334.1 1027770 1029137 D KEGG: slo:Shew_0740 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1027770..1029137 Shewanella halifaxensis HAW-EB4 5904330 YP_001673059.1 CDS Shal_0825 NC_010334.1 1029242 1029685 R PFAM: GCN5-related N-acetyltransferase; KEGG: shw:Sputw3181_3313 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1029242..1029685) Shewanella halifaxensis HAW-EB4 5904347 YP_001673060.1 CDS Shal_0826 NC_010334.1 1029843 1030181 D KEGG: sbm:Shew185_3550 hypothetical protein; hypothetical protein 1029843..1030181 Shewanella halifaxensis HAW-EB4 5904348 YP_001673061.1 CDS Shal_0827 NC_010334.1 1030351 1031649 D PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_0743 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1030351..1031649 Shewanella halifaxensis HAW-EB4 5904482 YP_001673062.1 CDS Shal_0828 NC_010334.1 1031807 1032220 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: spc:Sputcn32_0864 protein of unknown function DUF306, MetA and HslJ; hypothetical protein complement(1031807..1032220) Shewanella halifaxensis HAW-EB4 5904542 YP_001673063.1 CDS Shal_0829 NC_010334.1 1032352 1032507 D KEGG: shn:Shewana3_3360 hypothetical protein; hypothetical protein 1032352..1032507 Shewanella halifaxensis HAW-EB4 5904543 YP_001673064.1 CDS Shal_0830 NC_010334.1 1032676 1033596 R KEGG: slo:Shew_0746 diguanylate cyclase; putative diguanylate cyclase complement(1032676..1033596) Shewanella halifaxensis HAW-EB4 5904553 YP_001673065.1 CDS Shal_0831 NC_010334.1 1033884 1034441 D PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_3545 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1033884..1034441 Shewanella halifaxensis HAW-EB4 5904554 YP_001673066.1 CDS Shal_0832 NC_010334.1 1034450 1034800 D KEGG: sfr:Sfri_0644 hypothetical protein; hypothetical protein 1034450..1034800 Shewanella halifaxensis HAW-EB4 5904783 YP_001673067.1 CDS Shal_0833 NC_010334.1 1035191 1035595 D hypothetical protein 1035191..1035595 Shewanella halifaxensis HAW-EB4 5904784 YP_001673068.1 CDS Shal_0834 NC_010334.1 1035798 1036334 R KEGG: shm:Shewmr7_3476 hypothetical protein; hypothetical protein complement(1035798..1036334) Shewanella halifaxensis HAW-EB4 5902835 YP_001673069.1 CDS Shal_0835 NC_010334.1 1037152 1037847 D KEGG: mmw:Mmwyl1_2727 hypothetical protein; hypothetical protein 1037152..1037847 Shewanella halifaxensis HAW-EB4 5902772 YP_001673070.1 CDS Shal_0836 NC_010334.1 1038247 1039533 R PFAM: protein of unknown function DUF955; KEGG: psb:Psyr_2659 protein of unknown function DUF955; hypothetical protein complement(1038247..1039533) Shewanella halifaxensis HAW-EB4 5902773 YP_001673071.1 CDS Shal_0837 NC_010334.1 1040247 1041074 D KEGG: slo:Shew_3061 hypothetical protein; hypothetical protein 1040247..1041074 Shewanella halifaxensis HAW-EB4 5903157 YP_001673072.1 CDS Shal_0838 NC_010334.1 1041380 1042207 D KEGG: slo:Shew_3061 hypothetical protein; hypothetical protein 1041380..1042207 Shewanella halifaxensis HAW-EB4 5903158 YP_001673073.1 CDS Shal_0839 NC_010334.1 1042333 1042806 R PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_0645 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1042333..1042806) Shewanella halifaxensis HAW-EB4 5902968 YP_001673074.1 CDS Shal_0840 NC_010334.1 1042900 1043853 R PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_1916 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1042900..1043853) Shewanella halifaxensis HAW-EB4 5902969 YP_001673075.1 CDS Shal_0841 NC_010334.1 1043923 1045572 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_3486 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1043923..1045572 Shewanella halifaxensis HAW-EB4 5902784 YP_001673076.1 CDS Shal_0842 NC_010334.1 1045617 1047347 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rfr:Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein; thiamine pyrophosphate protein central region 1045617..1047347 Shewanella halifaxensis HAW-EB4 5903057 YP_001673077.1 CDS Shal_0843 NC_010334.1 1047456 1048610 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1047456..1048610) Shewanella halifaxensis HAW-EB4 5903058 YP_001673078.1 CDS Shal_0844 NC_010334.1 1049126 1051117 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1049126..1051117 Shewanella halifaxensis HAW-EB4 5902964 YP_001673079.1 CDS Shal_0845 NC_010334.1 1051215 1052234 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 1051215..1052234 Shewanella halifaxensis HAW-EB4 5902965 YP_001673080.1 CDS pgk NC_010334.1 1052725 1053900 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1052725..1053900 Shewanella halifaxensis HAW-EB4 5902988 YP_001673081.1 CDS Shal_0847 NC_010334.1 1054258 1055322 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1054258..1055322 Shewanella halifaxensis HAW-EB4 5902989 YP_001673082.1 CDS Shal_0848 NC_010334.1 1055533 1056273 D PFAM: protein of unknown function DUF481; KEGG: saz:Sama_2754 hypothetical protein; hypothetical protein 1055533..1056273 Shewanella halifaxensis HAW-EB4 5903468 YP_001673083.1 CDS Shal_0849 NC_010334.1 1056605 1057342 D KEGG: she:Shewmr4_0779 response regulator receiver protein; putative transcriptional regulator CadC 1056605..1057342 Shewanella halifaxensis HAW-EB4 5902610 YP_001673084.1 CDS Shal_0850 NC_010334.1 1057347 1057877 D hypothetical protein 1057347..1057877 Shewanella halifaxensis HAW-EB4 5902611 YP_001673085.1 CDS Shal_0851 NC_010334.1 1057988 1059427 D KEGG: slo:Shew_0762 hypothetical protein; hypothetical protein 1057988..1059427 Shewanella halifaxensis HAW-EB4 5902991 YP_001673086.1 CDS Shal_0852 NC_010334.1 1059460 1061679 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: slo:Shew_0763 putative PAS/PAC sensor protein; putative diguanylate cyclase complement(1059460..1061679) Shewanella halifaxensis HAW-EB4 5902992 YP_001673087.1 CDS Shal_0853 NC_010334.1 1061975 1062583 R PFAM: Radical SAM domain protein; KEGG: slo:Shew_0764 radical SAM domain protein; radical SAM domain-containing protein complement(1061975..1062583) Shewanella halifaxensis HAW-EB4 5902954 YP_001673088.1 CDS Shal_0854 NC_010334.1 1062777 1065929 R PFAM: acriflavin resistance protein; KEGG: sbm:Shew185_3529 acriflavin resistance protein; acriflavin resistance protein complement(1062777..1065929) Shewanella halifaxensis HAW-EB4 5902955 YP_001673089.1 CDS Shal_0855 NC_010334.1 1065929 1067158 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0766 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1065929..1067158) Shewanella halifaxensis HAW-EB4 5902665 YP_001673090.1 CDS Shal_0856 NC_010334.1 1067457 1068047 D hypothetical protein 1067457..1068047 Shewanella halifaxensis HAW-EB4 5902785 YP_001673091.1 CDS Shal_0857 NC_010334.1 1068113 1069348 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(1068113..1069348) Shewanella halifaxensis HAW-EB4 5902786 YP_001673092.1 CDS Shal_0858 NC_010334.1 1069418 1070158 R PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_0768 methyltransferase small; methyltransferase small complement(1069418..1070158) Shewanella halifaxensis HAW-EB4 5902915 YP_001673093.1 CDS Shal_0859 NC_010334.1 1070680 1072023 D PFAM: branched-chain amino acid transport system II carrier protein; KEGG: slo:Shew_0769 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1070680..1072023 Shewanella halifaxensis HAW-EB4 5902916 YP_001673094.1 CDS Shal_0860 NC_010334.1 1072501 1073403 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbm:Shew185_3524 tyrosine recombinase XerD; tyrosine recombinase XerD 1072501..1073403 Shewanella halifaxensis HAW-EB4 5902837 YP_001673095.1 CDS Shal_0861 NC_010334.1 1073700 1074428 D KEGG: son:SO_0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 1073700..1074428 Shewanella halifaxensis HAW-EB4 5902838 YP_001673096.1 CDS Shal_0862 NC_010334.1 1074563 1076287 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: slo:Shew_0772 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1074563..1076287 Shewanella halifaxensis HAW-EB4 5902812 YP_001673097.1 CDS Shal_0863 NC_010334.1 1076487 1076966 R PFAM: regulatory protein AsnC/Lrp family; KEGG: ppr:PBPRA0970 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1076487..1076966) Shewanella halifaxensis HAW-EB4 5903414 YP_001673098.1 CDS Shal_0864 NC_010334.1 1077194 1078507 D PFAM: protein of unknown function DUF1063; KEGG: ppr:PBPRB0240 hypothetical inner membrane protein; hypothetical protein 1077194..1078507 Shewanella halifaxensis HAW-EB4 5903415 YP_001673099.1 CDS Shal_0865 NC_010334.1 1079312 1080640 D KEGG: vfi:VF0643 serine transporter; serine transporter 1079312..1080640 Shewanella halifaxensis HAW-EB4 5904447 YP_001673100.1 CDS Shal_0866 NC_010334.1 1081339 1081836 D hypothetical protein 1081339..1081836 Shewanella halifaxensis HAW-EB4 5904448 YP_001673101.1 CDS Shal_0867 NC_010334.1 1082541 1083851 R PFAM: FAD dependent oxidoreductase; KEGG: rba:RB5278 D-amino acid dehydrogenase, small chain; FAD dependent oxidoreductase complement(1082541..1083851) Shewanella halifaxensis HAW-EB4 5904517 YP_001673102.1 CDS Shal_0868 NC_010334.1 1084262 1085299 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: hch:HCH_00069 transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family transcriptional regulator complement(1084262..1085299) Shewanella halifaxensis HAW-EB4 5904518 YP_001673103.1 CDS Shal_0869 NC_010334.1 1085427 1086041 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppu:PP_3565 transporter, LysE family; lysine exporter protein LysE/YggA 1085427..1086041 Shewanella halifaxensis HAW-EB4 5903196 YP_001673104.1 CDS Shal_0870 NC_010334.1 1086324 1086986 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1086324..1086986) Shewanella halifaxensis HAW-EB4 5904687 YP_001673105.1 CDS Shal_0871 NC_010334.1 1087267 1088211 D PFAM: protein of unknown function DUF808; KEGG: shm:Shewmr7_1013 protein of unknown function DUF808; hypothetical protein 1087267..1088211 Shewanella halifaxensis HAW-EB4 5904688 YP_001673106.1 CDS Shal_0872 NC_010334.1 1088255 1089388 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pha:PSHAa1702 hypothetical protein; endonuclease/exonuclease/phosphatase 1088255..1089388 Shewanella halifaxensis HAW-EB4 5904706 YP_001673107.1 CDS Shal_0873 NC_010334.1 1089681 1090181 R PFAM: MORN variant repeat protein; KEGG: fnu:FN0738 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein complement(1089681..1090181) Shewanella halifaxensis HAW-EB4 5904707 YP_001673108.1 CDS Shal_0874 NC_010334.1 1090389 1092155 D KEGG: shn:Shewana3_3482 alkaline phosphatase; alkaline phosphatase 1090389..1092155 Shewanella halifaxensis HAW-EB4 5906243 YP_001673109.1 CDS Shal_0875 NC_010334.1 1092602 1093162 D PFAM: phosphoribosyltransferase; KEGG: slo:Shew_0833 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase 1092602..1093162 Shewanella halifaxensis HAW-EB4 5906244 YP_001673110.1 CDS Shal_0876 NC_010334.1 1093519 1093731 R KEGG: slo:Shew_0834 hypothetical protein; hypothetical protein complement(1093519..1093731) Shewanella halifaxensis HAW-EB4 5906220 YP_001673111.1 CDS Shal_0877 NC_010334.1 1093976 1096645 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: son:SO_1059 aminopeptidase N; aminopeptidase N complement(1093976..1096645) Shewanella halifaxensis HAW-EB4 5903168 YP_001673112.1 CDS Shal_0878 NC_010334.1 1096915 1097520 R TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shn:Shewana3_0898 conserved hypothetical protein; membrane lipoprotein lipid attachment site complement(1096915..1097520) Shewanella halifaxensis HAW-EB4 5903169 YP_001673113.1 CDS Shal_0879 NC_010334.1 1097532 1098899 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sbm:Shew185_3477 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1097532..1098899) Shewanella halifaxensis HAW-EB4 5904205 YP_001673114.1 CDS Shal_0880 NC_010334.1 1099194 1099436 R PFAM: SlyX family protein; KEGG: slo:Shew_0838 SlyX family protein; SlyX family protein complement(1099194..1099436) Shewanella halifaxensis HAW-EB4 5904206 YP_001673115.1 CDS Shal_0881 NC_010334.1 1099894 1100664 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0840 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1099894..1100664 Shewanella halifaxensis HAW-EB4 5906034 YP_001673116.1 CDS Shal_0882 NC_010334.1 1100734 1102059 R PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_2784 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(1100734..1102059) Shewanella halifaxensis HAW-EB4 5906035 YP_001673117.1 CDS Shal_0883 NC_010334.1 1102238 1102609 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_0841 uncharacterized conserved protein UCP006287; hypothetical protein 1102238..1102609 Shewanella halifaxensis HAW-EB4 5905966 YP_001673118.1 CDS Shal_0884 NC_010334.1 1102701 1103336 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: slo:Shew_0842 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1102701..1103336) Shewanella halifaxensis HAW-EB4 5905967 YP_001673119.1 CDS Shal_0885 NC_010334.1 1103429 1105141 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: slo:Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ complement(1103429..1105141) Shewanella halifaxensis HAW-EB4 5906732 YP_001673120.1 CDS nrfA NC_010334.1 1105383 1106786 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 1105383..1106786 Shewanella halifaxensis HAW-EB4 5906669 YP_001673121.1 CDS Shal_0887 NC_010334.1 1106877 1107419 R PFAM: isochorismatase hydrolase; KEGG: shw:Sputw3181_0699 isochorismatase hydrolase; isochorismatase hydrolase complement(1106877..1107419) Shewanella halifaxensis HAW-EB4 5906670 YP_001673122.1 CDS Shal_0888 NC_010334.1 1107683 1108021 D PFAM: nitrogen regulatory protein P-II; KEGG: sdn:Sden_2905 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1107683..1108021 Shewanella halifaxensis HAW-EB4 5906570 YP_001673123.1 CDS Shal_0889 NC_010334.1 1108034 1109284 D PFAM: Rh family protein/ammonium transporter; KEGG: sfr:Sfri_0624 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 1108034..1109284 Shewanella halifaxensis HAW-EB4 5906571 YP_001673124.1 CDS Shal_0890 NC_010334.1 1109585 1109851 D KEGG: slo:Shew_0848 hypothetical protein; hypothetical protein 1109585..1109851 Shewanella halifaxensis HAW-EB4 5906568 YP_001673125.1 CDS Shal_0891 NC_010334.1 1109935 1111137 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0849 TPR repeat-containing protein; hypothetical protein 1109935..1111137 Shewanella halifaxensis HAW-EB4 5906569 YP_001673126.1 CDS Shal_0892 NC_010334.1 1111617 1112672 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1111617..1112672 Shewanella halifaxensis HAW-EB4 5906537 YP_001673127.1 CDS Shal_0893 NC_010334.1 1112737 1112853 R KEGG: shn:Shewana3_3527 hypothetical protein; hypothetical protein complement(1112737..1112853) Shewanella halifaxensis HAW-EB4 5906440 YP_001673128.1 CDS Shal_0894 NC_010334.1 1113255 1115036 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0853 ABC transporter-related protein; ABC transporter-like protein 1113255..1115036 Shewanella halifaxensis HAW-EB4 5906441 YP_001673129.1 CDS Shal_0895 NC_010334.1 1115402 1115533 R KEGG: sbm:Shew185_3700 hypothetical protein; hypothetical protein complement(1115402..1115533) Shewanella halifaxensis HAW-EB4 5906368 YP_001673130.1 CDS Shal_0896 NC_010334.1 1116145 1116894 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shw:Sputw3181_0711 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1116145..1116894 Shewanella halifaxensis HAW-EB4 5906369 YP_001673131.1 CDS Shal_0897 NC_010334.1 1117103 1118110 D PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0861 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1117103..1118110 Shewanella halifaxensis HAW-EB4 5906225 YP_001673132.1 CDS Shal_0898 NC_010334.1 1118278 1119909 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1118278..1119909 Shewanella halifaxensis HAW-EB4 5906226 YP_001673133.1 CDS Shal_0899 NC_010334.1 1119911 1120939 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sbl:Sbal_0603 ABC transporter related; ABC transporter-like protein 1119911..1120939 Shewanella halifaxensis HAW-EB4 5906109 YP_001673134.1 CDS Shal_0900 NC_010334.1 1121154 1122086 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: slo:Shew_0864 Dyp-type peroxidase family; Dyp-type peroxidase family protein 1121154..1122086 Shewanella halifaxensis HAW-EB4 5906110 YP_001673135.1 CDS Shal_0901 NC_010334.1 1122155 1122625 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0865 cupin 2, conserved barrel domain protein; cupin complement(1122155..1122625) Shewanella halifaxensis HAW-EB4 5906177 YP_001673136.1 CDS Shal_0902 NC_010334.1 1122890 1123360 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(1122890..1123360) Shewanella halifaxensis HAW-EB4 5906010 YP_001673137.1 CDS Shal_0903 NC_010334.1 1123713 1124648 D oxidizes malate to oxaloacetate; malate dehydrogenase 1123713..1124648 Shewanella halifaxensis HAW-EB4 5906011 YP_001673138.1 CDS Shal_0904 NC_010334.1 1124758 1125729 R PFAM: Polyprenyl synthetase; KEGG: slo:Shew_0868 trans-hexaprenyltranstransferase; polyprenyl synthetase complement(1124758..1125729) Shewanella halifaxensis HAW-EB4 5905234 YP_001673139.1 CDS rplU NC_010334.1 1126013 1126324 D PFAM: ribosomal protein L21; KEGG: slo:Shew_0869 ribosomal protein L21; 50S ribosomal protein L21 1126013..1126324 Shewanella halifaxensis HAW-EB4 5905235 YP_001673140.1 CDS rpmA NC_010334.1 1126340 1126594 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1126340..1126594 Shewanella halifaxensis HAW-EB4 5905080 YP_001673141.1 CDS obgE NC_010334.1 1126732 1127895 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1126732..1127895 Shewanella halifaxensis HAW-EB4 5905081 YP_001673142.1 CDS Shal_0908 NC_010334.1 1127925 1128683 D PFAM: protein of unknown function DUF1212; KEGG: slo:Shew_0872 protein of unknown function DUF1212; hypothetical protein 1127925..1128683 Shewanella halifaxensis HAW-EB4 5904764 YP_001673143.1 CDS Shal_0909 NC_010334.1 1128683 1129156 D KEGG: sbm:Shew185_1040 hypothetical protein; hypothetical protein 1128683..1129156 Shewanella halifaxensis HAW-EB4 5903986 YP_001673144.1 CDS Shal_0910 NC_010334.1 1129261 1129743 D PFAM: dihydrofolate reductase region; KEGG: she:Shewmr4_0900 dihydrofolate reductase; dihydrofolate reductase 1129261..1129743 Shewanella halifaxensis HAW-EB4 5903987 YP_001673145.1 CDS Shal_0911 NC_010334.1 1129843 1130238 D KEGG: sfr:Sfri_3083 hypothetical protein; hypothetical protein 1129843..1130238 Shewanella halifaxensis HAW-EB4 5906022 YP_001673146.1 CDS Shal_0912 NC_010334.1 1130408 1132429 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_0876 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1130408..1132429) Shewanella halifaxensis HAW-EB4 5906023 YP_001673147.1 CDS apaH NC_010334.1 1132530 1133363 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1132530..1133363) Shewanella halifaxensis HAW-EB4 5905280 YP_001673148.1 CDS apaG NC_010334.1 1133397 1133777 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(1133397..1133777) Shewanella halifaxensis HAW-EB4 5905281 YP_001673149.1 CDS ksgA NC_010334.1 1133937 1134740 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1133937..1134740) Shewanella halifaxensis HAW-EB4 5904538 YP_001673150.1 CDS pdxA NC_010334.1 1134757 1135740 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1134757..1135740) Shewanella halifaxensis HAW-EB4 5904539 YP_001673151.1 CDS Shal_0917 NC_010334.1 1135746 1137050 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbm:Shew185_1048 SurA domain protein; SurA domain-containing protein complement(1135746..1137050) Shewanella halifaxensis HAW-EB4 5904619 YP_001673152.1 CDS Shal_0918 NC_010334.1 1137178 1139502 R PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: slo:Shew_0882 organic solvent tolerance protein; organic solvent tolerance protein complement(1137178..1139502) Shewanella halifaxensis HAW-EB4 5903449 YP_001673153.1 CDS Shal_0919 NC_010334.1 1139658 1140668 D PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_3111 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1139658..1140668 Shewanella halifaxensis HAW-EB4 5903450 YP_001673154.1 CDS Shal_0920 NC_010334.1 1140669 1141337 D PFAM: Nucleotidyl transferase; KEGG: shn:Shewana3_3204 nucleotidyl transferase; nucleotidyl transferase 1140669..1141337 Shewanella halifaxensis HAW-EB4 5905595 YP_001673155.1 CDS djlA NC_010334.1 1141337 1142116 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1141337..1142116 Shewanella halifaxensis HAW-EB4 5905596 YP_001673156.1 CDS Shal_0922 NC_010334.1 1142149 1142760 D KEGG: slo:Shew_0886 hypothetical protein; hypothetical protein 1142149..1142760 Shewanella halifaxensis HAW-EB4 5904582 YP_001673157.1 CDS Shal_0923 NC_010334.1 1142831 1143784 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: shm:Shewmr7_3107 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 1142831..1143784 Shewanella halifaxensis HAW-EB4 5904583 YP_001673158.1 CDS purT NC_010334.1 1143906 1145081 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(1143906..1145081) Shewanella halifaxensis HAW-EB4 5905527 YP_001673159.1 CDS Shal_0925 NC_010334.1 1145386 1145772 D KEGG: slo:Shew_0889 hypothetical protein; hypothetical protein 1145386..1145772 Shewanella halifaxensis HAW-EB4 5906401 YP_001673160.1 CDS Shal_0926 NC_010334.1 1145774 1146910 D PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0890 secretion protein HlyD family protein; secretion protein HlyD family protein 1145774..1146910 Shewanella halifaxensis HAW-EB4 5906402 YP_001673161.1 CDS Shal_0927 NC_010334.1 1147051 1148520 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: slo:Shew_0892 AAA ATPase, central domain protein; ATPase central domain-containing protein 1147051..1148520 Shewanella halifaxensis HAW-EB4 5906688 YP_001673162.1 CDS Shal_0928 NC_010334.1 1148604 1149161 R KEGG: sbm:Shew185_1068 hypothetical protein; hypothetical protein complement(1148604..1149161) Shewanella halifaxensis HAW-EB4 5906689 YP_001673163.1 CDS Shal_0929 NC_010334.1 1149279 1149590 D PFAM: protein of unknown function DUF1289; KEGG: slo:Shew_0894 protein of unknown function DUF1289; hypothetical protein 1149279..1149590 Shewanella halifaxensis HAW-EB4 5906072 YP_001673164.1 CDS Shal_0930 NC_010334.1 1149577 1150845 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_3185 ATP-binding region, ATPase domain protein domain protein; histidine kinase complement(1149577..1150845) Shewanella halifaxensis HAW-EB4 5906073 YP_001673165.1 CDS Shal_0931 NC_010334.1 1150864 1151577 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0896 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1150864..1151577) Shewanella halifaxensis HAW-EB4 5906508 YP_001673166.1 CDS Shal_0932 NC_010334.1 1151577 1151942 R KEGG: slo:Shew_0897 hypothetical protein; hypothetical protein complement(1151577..1151942) Shewanella halifaxensis HAW-EB4 5906509 YP_001673167.1 CDS Shal_0933 NC_010334.1 1151999 1152874 R PFAM: MltA-interacting MipA family protein; KEGG: slo:Shew_0898 MltA-interacting MipA family protein; MltA-interacting MipA family protein complement(1151999..1152874) Shewanella halifaxensis HAW-EB4 5905669 YP_001673168.1 CDS Shal_0934 NC_010334.1 1153124 1153660 D PFAM: GCN5-related N-acetyltransferase; KEGG: saz:Sama_2792 conserved hypothetical acetyltransferase; N-acetyltransferase GCN5 1153124..1153660 Shewanella halifaxensis HAW-EB4 5906555 YP_001673169.1 CDS Shal_0935 NC_010334.1 1153657 1154142 R KEGG: shm:Shewmr7_3082 hypothetical protein; hypothetical protein complement(1153657..1154142) Shewanella halifaxensis HAW-EB4 5906556 YP_001673170.1 CDS Shal_0936 NC_010334.1 1154279 1154614 D PFAM: Protein of unknown function DUF1971; KEGG: sbm:Shew185_1077 protein of unknown function DUF1971; hypothetical protein 1154279..1154614 Shewanella halifaxensis HAW-EB4 5904044 YP_001673171.1 CDS Shal_0937 NC_010334.1 1154658 1155542 R KEGG: shm:Shewmr7_1169 UspA domain protein; UspA domain-containing protein complement(1154658..1155542) Shewanella halifaxensis HAW-EB4 5904045 YP_001673172.1 CDS Shal_0938 NC_010334.1 1156599 1157018 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: slo:Shew_0913 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1156599..1157018) Shewanella halifaxensis HAW-EB4 5903684 YP_001673173.1 CDS Shal_0939 NC_010334.1 1157110 1157718 R PFAM: NADPH-dependent FMN reductase; KEGG: slo:Shew_0914 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1157110..1157718) Shewanella halifaxensis HAW-EB4 5903685 YP_001673174.1 CDS Shal_0940 NC_010334.1 1157856 1158485 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: cps:CPS_0091 hypothetical protein; putative transcriptional regulator 1157856..1158485 Shewanella halifaxensis HAW-EB4 5906565 YP_001673175.1 CDS Shal_0941 NC_010334.1 1158492 1159196 D PFAM: pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase; pseudouridine synthase 1158492..1159196 Shewanella halifaxensis HAW-EB4 5904937 YP_001673176.1 CDS Shal_0942 NC_010334.1 1159695 1160297 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: vpa:VP0620 hypothetical protein; GPR1/FUN34/yaaH family protein 1159695..1160297 Shewanella halifaxensis HAW-EB4 5904938 YP_001673177.1 CDS Shal_0943 NC_010334.1 1160408 1161940 R PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0920 major facilitator superfamily MFS_1; major facilitator transporter complement(1160408..1161940) Shewanella halifaxensis HAW-EB4 5905901 YP_001673178.1 CDS Shal_0944 NC_010334.1 1162367 1163056 R PFAM: LrgB family protein; KEGG: son:SO_1048 hypothetical protein; LrgB family protein complement(1162367..1163056) Shewanella halifaxensis HAW-EB4 5905902 YP_001673179.1 CDS Shal_0945 NC_010334.1 1163053 1163538 R PFAM: LrgA family protein; KEGG: shn:Shewana3_0885 LrgA family protein; LrgA family protein complement(1163053..1163538) Shewanella halifaxensis HAW-EB4 5906374 YP_001673180.1 CDS Shal_0946 NC_010334.1 1163647 1164549 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 1163647..1164549 Shewanella halifaxensis HAW-EB4 5906375 YP_001673181.1 CDS Shal_0947 NC_010334.1 1164778 1164942 R PFAM: protein of unknown function UPF0057; KEGG: slo:Shew_0100 protein of unknown function UPF0057; hypothetical protein complement(1164778..1164942) Shewanella halifaxensis HAW-EB4 5906985 YP_001673182.1 CDS Shal_0948 NC_010334.1 1165103 1165696 R PFAM: AMMECR1 domain protein; KEGG: ppr:PBPRA1250 hypothetical protein; AMMECR1 domain-containing protein complement(1165103..1165696) Shewanella halifaxensis HAW-EB4 5906986 YP_001673183.1 CDS Shal_0949 NC_010334.1 1165674 1166483 R PFAM: protein of unknown function DUF52; KEGG: azo:azo1680 hypothetical protein; hypothetical protein complement(1165674..1166483) Shewanella halifaxensis HAW-EB4 5903763 YP_001673184.1 CDS Shal_0950 NC_010334.1 1166557 1167666 D PFAM: Radical SAM domain protein; KEGG: mtf:TBFG_13159 pyruvate formate lyase activating protein PflA; radical SAM domain-containing protein 1166557..1167666 Shewanella halifaxensis HAW-EB4 5903646 YP_001673185.1 CDS Shal_0951 NC_010334.1 1167796 1170759 R KEGG: slo:Shew_0921 hypothetical protein; hypothetical protein complement(1167796..1170759) Shewanella halifaxensis HAW-EB4 5903647 YP_001673186.1 CDS Shal_0952 NC_010334.1 1171157 1172878 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_0922 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1171157..1172878 Shewanella halifaxensis HAW-EB4 5903631 YP_001673187.1 CDS valS NC_010334.1 1173014 1175929 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1173014..1175929) Shewanella halifaxensis HAW-EB4 5903632 YP_001673188.1 CDS Shal_0954 NC_010334.1 1175949 1176452 R PFAM: DNA polymerase III chi subunit HolC; KEGG: slo:Shew_0924 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC complement(1175949..1176452) Shewanella halifaxensis HAW-EB4 5904040 YP_001673189.1 CDS Shal_0955 NC_010334.1 1176681 1177922 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbm:Shew185_3406 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1176681..1177922 Shewanella halifaxensis HAW-EB4 5904041 YP_001673190.1 CDS Shal_0956 NC_010334.1 1177996 1179033 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO_3392 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase complement(1177996..1179033) Shewanella halifaxensis HAW-EB4 5904523 YP_001673191.1 CDS Shal_0957 NC_010334.1 1179218 1180126 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0031 transcriptional regulators, LysR family; LysR family transcriptional regulator 1179218..1180126 Shewanella halifaxensis HAW-EB4 5904509 YP_001673192.1 CDS Shal_0958 NC_010334.1 1180210 1180743 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: vfi:VFA0032 thioredoxin peroxidase; alkyl hydroperoxide reductase complement(1180210..1180743) Shewanella halifaxensis HAW-EB4 5904510 YP_001673193.1 CDS Shal_0959 NC_010334.1 1180846 1181382 R KEGG: swi:Swit_1025 hypothetical protein; hypothetical protein complement(1180846..1181382) Shewanella halifaxensis HAW-EB4 5904410 YP_001673194.1 CDS Shal_0960 NC_010334.1 1181631 1181900 R hypothetical protein complement(1181631..1181900) Shewanella halifaxensis HAW-EB4 5904411 YP_001673195.1 CDS Shal_0961 NC_010334.1 1182215 1183537 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO_4351 CBS domain protein; hypothetical protein 1182215..1183537 Shewanella halifaxensis HAW-EB4 5904297 YP_001673196.1 CDS Shal_0962 NC_010334.1 1183832 1185340 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1183832..1185340) Shewanella halifaxensis HAW-EB4 5904298 YP_001673197.1 CDS Shal_0963 NC_010334.1 1185563 1186678 D PFAM: permease YjgP/YjgQ family protein; KEGG: saz:Sama_0796 hypothetical protein; YjgP/YjgQ family permease 1185563..1186678 Shewanella halifaxensis HAW-EB4 5904232 YP_001673198.1 CDS Shal_0964 NC_010334.1 1186675 1187733 D PFAM: permease YjgP/YjgQ family protein; KEGG: slo:Shew_0941 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1186675..1187733 Shewanella halifaxensis HAW-EB4 5904233 YP_001673199.1 CDS Shal_0965 NC_010334.1 1187886 1188410 R PFAM: RDD domain containing protein; KEGG: slo:Shew_0942 RDD domain containing protein; RDD domain-containing protein complement(1187886..1188410) Shewanella halifaxensis HAW-EB4 5902995 YP_001673200.1 CDS Shal_0966 NC_010334.1 1188468 1188722 R KEGG: slo:Shew_0943 hypothetical protein; hypothetical protein complement(1188468..1188722) Shewanella halifaxensis HAW-EB4 5903471 YP_001673201.1 CDS Shal_0967 NC_010334.1 1188768 1189247 R PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_0944 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1188768..1189247) Shewanella halifaxensis HAW-EB4 5903472 YP_001673202.1 CDS Shal_0968 NC_010334.1 1189317 1190807 R PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: shn:Shewana3_2999 peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq complement(1189317..1190807) Shewanella halifaxensis HAW-EB4 5904081 YP_001673203.1 CDS Shal_0969 NC_010334.1 1191313 1193136 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: slo:Shew_2720 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1191313..1193136 Shewanella halifaxensis HAW-EB4 5904082 YP_001673204.1 CDS Shal_0970 NC_010334.1 1193247 1193885 R KEGG: son:SO_1380 hypothetical protein; hypothetical protein complement(1193247..1193885) Shewanella halifaxensis HAW-EB4 5904781 YP_001673205.1 CDS Shal_0971 NC_010334.1 1194101 1195399 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shm:Shewmr7_2892 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1194101..1195399) Shewanella halifaxensis HAW-EB4 5904782 YP_001673206.1 CDS Shal_0972 NC_010334.1 1195595 1197382 R PFAM: creatinase; peptidase M24; KEGG: sbl:Sbal_3085 peptidase M24; peptidase M24 complement(1195595..1197382) Shewanella halifaxensis HAW-EB4 5904675 YP_001673207.1 CDS Shal_0974 NC_010334.1 1197894 1199111 D PFAM: peptidase M24; KEGG: slo:Shew_0955 peptidase M24; peptidase M24 1197894..1199111 Shewanella halifaxensis HAW-EB4 5904728 YP_001673208.1 CDS Shal_0975 NC_010334.1 1199379 1199849 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shn:Shewana3_2983 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(1199379..1199849) Shewanella halifaxensis HAW-EB4 5904637 YP_001673209.1 CDS Shal_0976 NC_010334.1 1200147 1201217 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO_A0114 outer membrane protein A; OmpA/MotB domain-containing protein 1200147..1201217 Shewanella halifaxensis HAW-EB4 5904638 YP_001673210.1 CDS Shal_0977 NC_010334.1 1201220 1206244 D PFAM: Ig domain protein group 2 domain protein; KEGG: sbl:Sbal_4398 Ig domain protein, group 2 domain protein; Ig domain-containing protein 1201220..1206244 Shewanella halifaxensis HAW-EB4 5904576 YP_001673211.1 CDS Shal_0978 NC_010334.1 1206333 1206962 R PFAM: Cold-shock protein DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: sdn:Sden_2865 protein of unknown function DUF1294; cold-shock DNA-binding domain-containing protein complement(1206333..1206962) Shewanella halifaxensis HAW-EB4 5904577 YP_001673212.1 CDS Shal_0979 NC_010334.1 1207079 1207372 R PFAM: regulatory protein ArsR; KEGG: ppr:PBPRA2744 hypothetical transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(1207079..1207372) Shewanella halifaxensis HAW-EB4 5904569 YP_001673213.1 CDS Shal_0980 NC_010334.1 1207484 1207975 R KEGG: shm:Shewmr7_2880 hypothetical protein; hypothetical protein complement(1207484..1207975) Shewanella halifaxensis HAW-EB4 5904570 YP_001673214.1 CDS Shal_0981 NC_010334.1 1208143 1209060 D PFAM: protein of unknown function DUF368; KEGG: slo:Shew_0960 protein of unknown function DUF368; hypothetical protein 1208143..1209060 Shewanella halifaxensis HAW-EB4 5904378 YP_001673215.1 CDS Shal_0982 NC_010334.1 1209203 1209547 R KEGG: slo:Shew_0961 hypothetical protein; hypothetical protein complement(1209203..1209547) Shewanella halifaxensis HAW-EB4 5904313 YP_001673216.1 CDS Shal_0983 NC_010334.1 1209990 1210724 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0963 hypothetical protein; hypothetical protein complement(1209990..1210724) Shewanella halifaxensis HAW-EB4 5904314 YP_001673217.1 CDS Shal_0984 NC_010334.1 1210891 1211262 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: slo:Shew_0964 protein of unknown function DUF861, cupin_3; hypothetical protein complement(1210891..1211262) Shewanella halifaxensis HAW-EB4 5904245 YP_001673218.1 CDS Shal_0985 NC_010334.1 1211343 1212848 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_0965 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1211343..1212848) Shewanella halifaxensis HAW-EB4 5904246 YP_001673219.1 CDS Shal_0986 NC_010334.1 1212958 1214298 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1212958..1214298) Shewanella halifaxensis HAW-EB4 5903347 YP_001673220.1 CDS Shal_0987 NC_010334.1 1214585 1216084 D PFAM: aldehyde dehydrogenase; KEGG: shw:Sputw3181_3079 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 1214585..1216084 Shewanella halifaxensis HAW-EB4 5903348 YP_001673221.1 CDS Shal_0988 NC_010334.1 1216324 1217550 D PFAM: regulatory protein MerR; Methyltransferase type 11; KEGG: dps:DPPB100 probable transcription regulator; MerR family transcriptional regulator 1216324..1217550 Shewanella halifaxensis HAW-EB4 5902742 YP_001673222.1 CDS Shal_0989 NC_010334.1 1217664 1218200 D PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_3171 acetyltransferase; N-acetyltransferase GCN5 1217664..1218200 Shewanella halifaxensis HAW-EB4 5903105 YP_001673223.1 CDS Shal_0990 NC_010334.1 1218290 1218883 D TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO_3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 1218290..1218883 Shewanella halifaxensis HAW-EB4 5903106 YP_001673224.1 CDS Shal_0991 NC_010334.1 1218927 1219619 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 1218927..1219619 Shewanella halifaxensis HAW-EB4 5903404 YP_001673225.1 CDS Shal_0992 NC_010334.1 1219728 1221035 R PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_2922 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1219728..1221035) Shewanella halifaxensis HAW-EB4 5903405 YP_001673226.1 CDS Shal_0993 NC_010334.1 1221283 1221831 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0970 transcriptional regulator, XRE family; XRE family transcriptional regulator 1221283..1221831 Shewanella halifaxensis HAW-EB4 5902917 YP_001673227.1 CDS Shal_0994 NC_010334.1 1222329 1223090 D PFAM: peptidase C26; KEGG: slo:Shew_0971 peptidase C26; peptidase C26 1222329..1223090 Shewanella halifaxensis HAW-EB4 5902918 YP_001673228.1 CDS Shal_0995 NC_010334.1 1223093 1224442 D PFAM: glutamine synthetase catalytic region; KEGG: slo:Shew_0972 glutamate--ammonia ligase; glutamate--putrescine ligase 1223093..1224442 Shewanella halifaxensis HAW-EB4 5903073 YP_001673229.1 CDS Shal_0996 NC_010334.1 1224720 1225820 D PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0973 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1224720..1225820 Shewanella halifaxensis HAW-EB4 5903074 YP_001673230.1 CDS Shal_0997 NC_010334.1 1225939 1227075 D KEGG: slo:Shew_0974 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1225939..1227075 Shewanella halifaxensis HAW-EB4 5902685 YP_001673231.1 CDS Shal_0998 NC_010334.1 1227086 1227991 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1227086..1227991 Shewanella halifaxensis HAW-EB4 5904875 YP_001673232.1 CDS Shal_0999 NC_010334.1 1227988 1228803 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 1227988..1228803 Shewanella halifaxensis HAW-EB4 5904876 YP_001673233.1 CDS Shal_1000 NC_010334.1 1228969 1230291 D PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_0977 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1228969..1230291 Shewanella halifaxensis HAW-EB4 5905114 YP_001673234.1 CDS Shal_1001 NC_010334.1 1230433 1231881 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: shn:Shewana3_3092 succinic semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase 1230433..1231881 Shewanella halifaxensis HAW-EB4 5905115 YP_001673235.1 CDS Shal_1002 NC_010334.1 1231929 1233206 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1231929..1233206 Shewanella halifaxensis HAW-EB4 5905112 YP_001673236.1 CDS Shal_1003 NC_010334.1 1233304 1233735 R PFAM: UspA domain protein; KEGG: slo:Shew_3101 UspA domain protein; UspA domain-containing protein complement(1233304..1233735) Shewanella halifaxensis HAW-EB4 5905113 YP_001673237.1 CDS Shal_1004 NC_010334.1 1234698 1236545 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: slo:Shew_0996 RNA polymerase, sigma 70 subunit, RpoD family; RNA polymerase sigma 70 subunit RpoD complement(1234698..1236545) Shewanella halifaxensis HAW-EB4 5903388 YP_001673238.1 CDS Shal_1005 NC_010334.1 1236663 1238393 R KEGG: slo:Shew_0997 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(1236663..1238393) Shewanella halifaxensis HAW-EB4 5905339 YP_001673239.1 CDS Shal_1006 NC_010334.1 1238530 1238973 R KEGG: slo:Shew_0998 GatB/YqeY domain protein; GatB/YqeY domain-containing protein complement(1238530..1238973) Shewanella halifaxensis HAW-EB4 5905340 YP_001673240.1 CDS rpsU NC_010334.1 1238981 1239196 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1238981..1239196) Shewanella halifaxensis HAW-EB4 5905391 YP_001673241.1 CDS Shal_1008 NC_010334.1 1239425 1240441 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1239425..1240441 Shewanella halifaxensis HAW-EB4 5905392 YP_001673242.1 CDS Shal_1009 NC_010334.1 1240507 1241130 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: son:SO_3563 SM-20 domain protein; 2OG-Fe(II) oxygenase complement(1240507..1241130) Shewanella halifaxensis HAW-EB4 5905167 YP_001673243.1 CDS Shal_1010 NC_010334.1 1241434 1242033 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1241434..1242033) Shewanella halifaxensis HAW-EB4 5905168 YP_001673244.1 CDS Shal_1011 NC_010334.1 1242344 1242697 D TIGRFAM: dihydroneopterin aldolase; KEGG: slo:Shew_1002 dihydroneopterin aldolase; dihydroneopterin aldolase 1242344..1242697 Shewanella halifaxensis HAW-EB4 5904519 YP_001673245.1 CDS Shal_1012 NC_010334.1 1242698 1243189 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: slo:Shew_1003 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1242698..1243189 Shewanella halifaxensis HAW-EB4 5905817 YP_001673246.1 CDS Shal_1013 NC_010334.1 1243214 1244014 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1243214..1244014 Shewanella halifaxensis HAW-EB4 5905818 YP_001673247.1 CDS Shal_1014 NC_010334.1 1244069 1244902 D KEGG: slo:Shew_1005 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 1244069..1244902 Shewanella halifaxensis HAW-EB4 5905674 YP_001673248.1 CDS Shal_1015 NC_010334.1 1244956 1245855 D PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: slo:Shew_1006 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1244956..1245855 Shewanella halifaxensis HAW-EB4 5905675 YP_001673249.1 CDS Shal_1016 NC_010334.1 1246088 1246354 R KEGG: slo:Shew_1007 major outer membrane lipoprotein, putative; major outer membrane lipoprotein complement(1246088..1246354) Shewanella halifaxensis HAW-EB4 5905725 YP_001673250.1 CDS Shal_1017 NC_010334.1 1246573 1247850 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: slo:Shew_1008 metal dependent phosphohydrolase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1246573..1247850) Shewanella halifaxensis HAW-EB4 5905726 YP_001673251.1 CDS Shal_1018 NC_010334.1 1248196 1249809 D PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: slo:Shew_1009 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 1248196..1249809 Shewanella halifaxensis HAW-EB4 5905721 YP_001673252.1 CDS Shal_1019 NC_010334.1 1249809 1250879 D KEGG: slo:Shew_1010 general secretion pathway protein B; general secretion pathway protein B 1249809..1250879 Shewanella halifaxensis HAW-EB4 5905884 YP_001673253.1 CDS Shal_1020 NC_010334.1 1250964 1252211 R PFAM: Citrate transporter; KEGG: shn:Shewana3_3073 citrate transporter; citrate transporter complement(1250964..1252211) Shewanella halifaxensis HAW-EB4 5905885 YP_001673254.1 CDS Shal_1021 NC_010334.1 1252662 1253951 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1252662..1253951) Shewanella halifaxensis HAW-EB4 5905947 YP_001673255.1 CDS Shal_1025 NC_010334.1 1254820 1255986 R hypothetical protein complement(1254820..1255986) Shewanella halifaxensis HAW-EB4 5905920 YP_001673256.1 CDS Shal_1026 NC_010334.1 1256015 1256941 R PFAM: ApbE family lipoprotein; KEGG: vfi:VF0732 iron-sulfur cluster assembly/repair protein ApbE; ApbE family lipoprotein complement(1256015..1256941) Shewanella halifaxensis HAW-EB4 5905921 YP_001673257.1 CDS Shal_1027 NC_010334.1 1257405 1258190 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1257405..1258190 Shewanella halifaxensis HAW-EB4 5905801 YP_001673258.1 CDS Shal_1030 NC_010334.1 1259506 1259916 R PFAM: cytochrome c class I; KEGG: sbl:Sbal_0009 monoheme cytochrome c; cytochrome c class I complement(1259506..1259916) Shewanella halifaxensis HAW-EB4 5906335 YP_001673259.1 CDS Shal_1031 NC_010334.1 1259918 1260307 R KEGG: son:SO_0716 monoheme cytochrome c, putative; hypothetical protein complement(1259918..1260307) Shewanella halifaxensis HAW-EB4 5905914 YP_001673260.1 CDS Shal_1032 NC_010334.1 1260307 1261533 R PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sbl:Sbal_0007 oxidoreductase, molybdopterin binding; molybdopterin-binding oxidoreductase complement(1260307..1261533) Shewanella halifaxensis HAW-EB4 5905915 YP_001673261.1 CDS Shal_1033 NC_010334.1 1261533 1261853 R PFAM: cytochrome c class I; KEGG: sbl:Sbal_0006 monoheme cytochrome c; cytochrome c class I complement(1261533..1261853) Shewanella halifaxensis HAW-EB4 5906779 YP_001673262.1 CDS Shal_1034 NC_010334.1 1262624 1264345 R PFAM: Chloride channel core; KEGG: son:SO_1302 chloride channel; chloride channel core complement(1262624..1264345) Shewanella halifaxensis HAW-EB4 5906780 YP_001673263.1 CDS Shal_1035 NC_010334.1 1264407 1265210 D KEGG: slo:Shew_1016 hypothetical protein; hypothetical protein 1264407..1265210 Shewanella halifaxensis HAW-EB4 5906978 YP_001673264.1 CDS Shal_1036 NC_010334.1 1265203 1265553 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1265203..1265553 Shewanella halifaxensis HAW-EB4 5906979 YP_001673265.1 CDS Shal_1037 NC_010334.1 1265636 1266154 R KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein complement(1265636..1266154) Shewanella halifaxensis HAW-EB4 5906862 YP_001673266.1 CDS Shal_1038 NC_010334.1 1266244 1266585 R KEGG: shw:Sputw3181_3039 hypothetical protein; hypothetical protein complement(1266244..1266585) Shewanella halifaxensis HAW-EB4 5904451 YP_001673267.1 CDS Shal_1039 NC_010334.1 1266841 1268253 R PFAM: Alkaline phosphatase; KEGG: vpa:VPA1073 putative alkaline phosphatase; alkaline phosphatase complement(1266841..1268253) Shewanella halifaxensis HAW-EB4 5904452 YP_001673268.1 CDS Shal_1040 NC_010334.1 1268336 1270855 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: shn:Shewana3_3062 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(1268336..1270855) Shewanella halifaxensis HAW-EB4 5904374 YP_001673269.1 CDS Shal_1041 NC_010334.1 1270951 1273716 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vvy:VV0250 outer membrane receptor protein; TonB-dependent receptor complement(1270951..1273716) Shewanella halifaxensis HAW-EB4 5904375 YP_001673270.1 CDS Shal_1042 NC_010334.1 1274069 1276219 D PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_2965 transcriptional regulator domain protein; winged helix family two component response transcriptional regulator 1274069..1276219 Shewanella halifaxensis HAW-EB4 5905057 YP_001673271.1 CDS anmK NC_010334.1 1276337 1277446 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1276337..1277446) Shewanella halifaxensis HAW-EB4 5905058 YP_001673272.1 CDS Shal_1044 NC_010334.1 1277518 1278942 R PFAM: peptidase M23B; Opacity-associated protein A domain protein; KEGG: slo:Shew_1021 peptidase M23B; peptidase M23B complement(1277518..1278942) Shewanella halifaxensis HAW-EB4 5904513 YP_001673273.1 CDS Shal_1045 NC_010334.1 1279071 1280267 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1279071..1280267 Shewanella halifaxensis HAW-EB4 5904514 YP_001673274.1 CDS Shal_1046 NC_010334.1 1280329 1280739 R KEGG: shw:Sputw3181_3035 hypothetical protein; hypothetical protein complement(1280329..1280739) Shewanella halifaxensis HAW-EB4 5906810 YP_001673275.1 CDS Shal_1047 NC_010334.1 1280888 1281367 R KEGG: slo:Shew_1023 hypothetical protein; hypothetical protein complement(1280888..1281367) Shewanella halifaxensis HAW-EB4 5904623 YP_001673276.1 CDS Shal_1048 NC_010334.1 1281367 1281990 R PFAM: protein of unknown function UPF0126; KEGG: slo:Shew_1024 protein of unknown function UPF0126; hypothetical protein complement(1281367..1281990) Shewanella halifaxensis HAW-EB4 5904624 YP_001673277.1 CDS Shal_1049 NC_010334.1 1281987 1282376 R KEGG: slo:Shew_1025 hypothetical protein; hypothetical protein complement(1281987..1282376) Shewanella halifaxensis HAW-EB4 5906821 YP_001673278.1 CDS Shal_1050 NC_010334.1 1282510 1283490 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: slo:Shew_1026 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB complement(1282510..1283490) Shewanella halifaxensis HAW-EB4 5906822 YP_001673279.1 CDS Shal_1051 NC_010334.1 1283577 1284269 R PFAM: purine or other phosphorylase family 1; KEGG: shn:Shewana3_3052 purine and other phosphorylases, family 1; adenosylhomocysteine nucleosidase complement(1283577..1284269) Shewanella halifaxensis HAW-EB4 5905752 YP_001673280.1 CDS Shal_1052 NC_010334.1 1284758 1286053 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE3 domain protein; KEGG: pin:Ping_3077 diguanylate cyclase; diguanylate cyclase 1284758..1286053 Shewanella halifaxensis HAW-EB4 5905753 YP_001673281.1 CDS Shal_1053 NC_010334.1 1286247 1286702 D PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_0291 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1286247..1286702 Shewanella halifaxensis HAW-EB4 5906621 YP_001673282.1 CDS Shal_1054 NC_010334.1 1286827 1287309 R PFAM: regulatory protein MarR; KEGG: sfr:Sfri_1943 transcriptional regulator, MarR family protein; MarR family transcriptional regulator complement(1286827..1287309) Shewanella halifaxensis HAW-EB4 5906591 YP_001673283.1 CDS Shal_1055 NC_010334.1 1287477 1288181 R PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_1944 hypothetical protein; hypothetical protein complement(1287477..1288181) Shewanella halifaxensis HAW-EB4 5906592 YP_001673284.1 CDS Shal_1056 NC_010334.1 1288200 1289417 R KEGG: sfr:Sfri_1945 putative transporter, BCCT family protein; putative BCCT family protein transporter complement(1288200..1289417) Shewanella halifaxensis HAW-EB4 5906727 YP_001673285.1 CDS Shal_1057 NC_010334.1 1289763 1291460 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(1289763..1291460) Shewanella halifaxensis HAW-EB4 5906728 YP_001673286.1 CDS Shal_1058 NC_010334.1 1291470 1292933 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(1291470..1292933) Shewanella halifaxensis HAW-EB4 5906323 YP_001673287.1 CDS Shal_1059 NC_010334.1 1292924 1293529 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(1292924..1293529) Shewanella halifaxensis HAW-EB4 5906324 YP_001673288.1 CDS gltD NC_010334.1 1294179 1295588 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1294179..1295588) Shewanella halifaxensis HAW-EB4 5903273 YP_001673289.1 CDS gltB NC_010334.1 1295595 1300043 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(1295595..1300043) Shewanella halifaxensis HAW-EB4 5903274 YP_001673290.1 CDS Shal_1062 NC_010334.1 1300543 1301484 D KEGG: shn:Shewana3_3048 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 1300543..1301484 Shewanella halifaxensis HAW-EB4 5903779 YP_001673291.1 CDS Shal_1063 NC_010334.1 1301674 1302039 D PFAM: Hpt domain protein; KEGG: son:SO_1327 sensor histidine kinase-related protein; Hpt protein 1301674..1302039 Shewanella halifaxensis HAW-EB4 5903155 YP_001673292.1 CDS Shal_1064 NC_010334.1 1302217 1303149 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_3025 transcriptional regulator, LysR family; LysR family transcriptional regulator 1302217..1303149 Shewanella halifaxensis HAW-EB4 5903156 YP_001673293.1 CDS Shal_1065 NC_010334.1 1303211 1304284 R KEGG: saz:Sama_0861 adenylate cyclase-related protein; putative adenylate/guanylate cyclase complement(1303211..1304284) Shewanella halifaxensis HAW-EB4 5903069 YP_001673294.1 CDS Shal_1066 NC_010334.1 1304409 1305080 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1304409..1305080) Shewanella halifaxensis HAW-EB4 5903070 YP_001673295.1 CDS Shal_1067 NC_010334.1 1305773 1306294 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1305773..1306294 Shewanella halifaxensis HAW-EB4 5904772 YP_001673296.1 CDS Shal_1068 NC_010334.1 1306314 1308548 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: shm:Shewmr7_2946 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1306314..1308548 Shewanella halifaxensis HAW-EB4 5904773 YP_001673297.1 CDS Shal_1069 NC_010334.1 1308623 1309423 D PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2945 protein of unknown function DUF81; hypothetical protein 1308623..1309423 Shewanella halifaxensis HAW-EB4 5903313 YP_001673298.1 CDS thyA NC_010334.1 1309508 1310359 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1309508..1310359 Shewanella halifaxensis HAW-EB4 5903314 YP_001673299.1 CDS nhaA NC_010334.1 1311115 1312290 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1311115..1312290 Shewanella halifaxensis HAW-EB4 5904469 YP_001673300.1 CDS Shal_1072 NC_010334.1 1312287 1312670 D KEGG: slo:Shew_1043 hypothetical protein; hypothetical protein 1312287..1312670 Shewanella halifaxensis HAW-EB4 5904463 YP_001673301.1 CDS nhaR NC_010334.1 1312740 1313648 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1312740..1313648 Shewanella halifaxensis HAW-EB4 5904464 YP_001673302.1 CDS Shal_1074 NC_010334.1 1313815 1314054 D PFAM: protein of unknown function DUF339; KEGG: slo:Shew_1045 protein of unknown function DUF339; hypothetical protein 1313815..1314054 Shewanella halifaxensis HAW-EB4 5904321 YP_001673303.1 CDS Shal_1075 NC_010334.1 1314035 1314451 D KEGG: sbm:Shew185_1237 hypothetical protein; hypothetical protein 1314035..1314451 Shewanella halifaxensis HAW-EB4 5904322 YP_001673304.1 CDS Shal_1076 NC_010334.1 1314482 1316092 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1314482..1316092) Shewanella halifaxensis HAW-EB4 5903434 YP_001673305.1 CDS Shal_1077 NC_010334.1 1316312 1316890 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1316312..1316890 Shewanella halifaxensis HAW-EB4 5903435 YP_001673306.1 CDS Shal_1078 NC_010334.1 1316916 1317521 D PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: slo:Shew_1049 anti sigma-E protein, RseA; anti sigma-E protein RseA 1316916..1317521 Shewanella halifaxensis HAW-EB4 5902676 YP_001673307.1 CDS Shal_1079 NC_010334.1 1317534 1318466 D PFAM: MucB/RseB family protein; KEGG: she:Shewmr4_2852 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 1317534..1318466 Shewanella halifaxensis HAW-EB4 5902677 YP_001673308.1 CDS Shal_1080 NC_010334.1 1318480 1318944 D PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: son:SO_1345 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC 1318480..1318944 Shewanella halifaxensis HAW-EB4 5903266 YP_001673309.1 CDS Shal_1081 NC_010334.1 1319074 1320864 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1319074..1320864 Shewanella halifaxensis HAW-EB4 5903267 YP_001673310.1 CDS Shal_1082 NC_010334.1 1321004 1321921 D KEGG: slo:Shew_1053 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1321004..1321921 Shewanella halifaxensis HAW-EB4 5903241 YP_001673311.1 CDS rnc NC_010334.1 1321923 1322600 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1321923..1322600 Shewanella halifaxensis HAW-EB4 5903534 YP_001673312.1 CDS era NC_010334.1 1322597 1323589 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1322597..1323589 Shewanella halifaxensis HAW-EB4 5903535 YP_001673313.1 CDS Shal_1085 NC_010334.1 1323718 1324473 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: slo:Shew_1056 DNA repair protein RecO; DNA repair protein RecO 1323718..1324473 Shewanella halifaxensis HAW-EB4 5904607 YP_001673314.1 CDS Shal_1086 NC_010334.1 1324591 1325328 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1324591..1325328 Shewanella halifaxensis HAW-EB4 5904608 YP_001673315.1 CDS acpS NC_010334.1 1325516 1325911 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1325516..1325911 Shewanella halifaxensis HAW-EB4 5904907 YP_001673316.1 CDS Shal_1088 NC_010334.1 1325921 1326382 R PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG10906 spermine/spermidine acetyltransferase; N-acetyltransferase GCN5 complement(1325921..1326382) Shewanella halifaxensis HAW-EB4 5904908 YP_001673317.1 CDS Shal_1089 NC_010334.1 1326545 1327486 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: zmo:ZMO1573 predicted iron-dependent peroxidase; Dyp-type peroxidase family protein complement(1326545..1327486) Shewanella halifaxensis HAW-EB4 5904909 YP_001673318.1 CDS Shal_1090 NC_010334.1 1327826 1328872 D KEGG: slo:Shew_2460 hypothetical protein; hypothetical protein 1327826..1328872 Shewanella halifaxensis HAW-EB4 5904910 YP_001673319.1 CDS Shal_1091 NC_010334.1 1329338 1330804 D KEGG: mgm:Mmc1_0550 hypothetical protein; hypothetical protein 1329338..1330804 Shewanella halifaxensis HAW-EB4 5904932 YP_001673320.1 CDS Shal_1092 NC_010334.1 1330861 1331427 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: vpa:VP1222 putative cytochrome c-type protein; NapC/NirT cytochrome c domain-containing protein 1330861..1331427 Shewanella halifaxensis HAW-EB4 5904988 YP_001673321.1 CDS Shal_1093 NC_010334.1 1331659 1332201 D PFAM: protein of unknown function DUF962; KEGG: slo:Shew_1059 protein of unknown function DUF962; hypothetical protein 1331659..1332201 Shewanella halifaxensis HAW-EB4 5904989 YP_001673322.1 CDS Shal_1094 NC_010334.1 1332293 1333573 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: slo:Shew_1060 protein of unknown function DUF21; hypothetical protein complement(1332293..1333573) Shewanella halifaxensis HAW-EB4 5905053 YP_001673323.1 CDS Shal_1095 NC_010334.1 1333722 1334510 R PFAM: cytochrome c assembly protein; KEGG: sbm:Shew185_1252 cytochrome c assembly protein; cytochrome c assembly protein complement(1333722..1334510) Shewanella halifaxensis HAW-EB4 5905054 YP_001673324.1 CDS Shal_1096 NC_010334.1 1334904 1336277 D with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1334904..1336277 Shewanella halifaxensis HAW-EB4 5905045 YP_001673325.1 CDS rpsP NC_010334.1 1336495 1336746 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1336495..1336746 Shewanella halifaxensis HAW-EB4 5905046 YP_001673326.1 CDS rimM NC_010334.1 1336767 1337297 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1336767..1337297 Shewanella halifaxensis HAW-EB4 5905178 YP_001673327.1 CDS trmD NC_010334.1 1337313 1338059 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1337313..1338059 Shewanella halifaxensis HAW-EB4 5905179 YP_001673328.1 CDS rplS NC_010334.1 1338096 1338449 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1338096..1338449 Shewanella halifaxensis HAW-EB4 5905189 YP_001673329.1 CDS Shal_1101 NC_010334.1 1338809 1339900 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1338809..1339900 Shewanella halifaxensis HAW-EB4 5905190 YP_001673330.1 CDS tyrA NC_010334.1 1339900 1341054 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1339900..1341054 Shewanella halifaxensis HAW-EB4 5905208 YP_001673331.1 CDS Shal_1103 NC_010334.1 1341333 1343027 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1341333..1343027 Shewanella halifaxensis HAW-EB4 5905230 YP_001673332.1 CDS Shal_1104 NC_010334.1 1343122 1344213 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: slo:Shew_1070 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1343122..1344213 Shewanella halifaxensis HAW-EB4 5905231 YP_001673333.1 CDS Shal_1105 NC_010334.1 1344351 1344689 D KEGG: son:SO_1365 hypothetical protein; hypothetical protein 1344351..1344689 Shewanella halifaxensis HAW-EB4 5905278 YP_001673334.1 CDS Shal_1106 NC_010334.1 1344731 1346017 D PFAM: sodium/hydrogen exchanger; KEGG: sbm:Shew185_1263 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1344731..1346017 Shewanella halifaxensis HAW-EB4 5905279 YP_001673335.1 CDS Shal_1107 NC_010334.1 1346059 1348038 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sbm:Shew185_1264 chorismate mutase; chorismate mutase complement(1346059..1348038) Shewanella halifaxensis HAW-EB4 5905287 YP_001673336.1 CDS Shal_1108 NC_010334.1 1348358 1348720 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shn:Shewana3_1133 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1348358..1348720) Shewanella halifaxensis HAW-EB4 5905288 YP_001673337.1 CDS Shal_1109 NC_010334.1 1349030 1349722 D PFAM: cytochrome B561; KEGG: sbl:Sbal_1222 cytochrome b561; cytochrome B561 1349030..1349722 Shewanella halifaxensis HAW-EB4 5905213 YP_001673338.1 CDS Shal_1110 NC_010334.1 1349787 1350248 R PFAM: cytochrome c class II; KEGG: slo:Shew_1075 cytochrome c, class II; cytochrome c class II complement(1349787..1350248) Shewanella halifaxensis HAW-EB4 5905214 YP_001673339.1 CDS Shal_1111 NC_010334.1 1350475 1350750 D TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO_3419 trp operon repressor; Trp operon repressor 1350475..1350750 Shewanella halifaxensis HAW-EB4 5904258 YP_001673340.1 CDS Shal_1112 NC_010334.1 1350804 1351205 R KEGG: shn:Shewana3_1137 hypothetical protein; hypothetical protein complement(1350804..1351205) Shewanella halifaxensis HAW-EB4 5905557 YP_001673341.1 CDS Shal_1113 NC_010334.1 1351338 1351958 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_1078 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(1351338..1351958) Shewanella halifaxensis HAW-EB4 5905558 YP_001673342.1 CDS thrA NC_010334.1 1352672 1355137 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1352672..1355137 Shewanella halifaxensis HAW-EB4 5905512 YP_001673343.1 CDS Shal_1115 NC_010334.1 1355134 1356069 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1355134..1356069 Shewanella halifaxensis HAW-EB4 5905513 YP_001673344.1 CDS Shal_1116 NC_010334.1 1356114 1357400 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1356114..1357400 Shewanella halifaxensis HAW-EB4 5905617 YP_001673345.1 CDS Shal_1117 NC_010334.1 1357669 1357959 D KEGG: sbm:Shew185_1274 hypothetical protein; hypothetical protein 1357669..1357959 Shewanella halifaxensis HAW-EB4 5905618 YP_001673346.1 CDS Shal_1118 NC_010334.1 1357977 1358831 R KEGG: slo:Shew_1083 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 complement(1357977..1358831) Shewanella halifaxensis HAW-EB4 5905589 YP_001673347.1 CDS Shal_1119 NC_010334.1 1359061 1359612 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sfr:Sfri_2903 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation-binding domain-containing protein 1359061..1359612 Shewanella halifaxensis HAW-EB4 5905590 YP_001673348.1 CDS Shal_1120 NC_010334.1 1359691 1359876 R KEGG: son:SO_3548 hypothetical protein; hypothetical protein complement(1359691..1359876) Shewanella halifaxensis HAW-EB4 5905719 YP_001673349.1 CDS pgi NC_010334.1 1360100 1361737 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1360100..1361737) Shewanella halifaxensis HAW-EB4 5905720 YP_001673350.1 CDS Shal_1122 NC_010334.1 1361754 1362710 R KEGG: slo:Shew_1089 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(1361754..1362710) Shewanella halifaxensis HAW-EB4 5903197 YP_001673351.1 CDS Shal_1123 NC_010334.1 1362993 1364090 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(1362993..1364090) Shewanella halifaxensis HAW-EB4 5905805 YP_001673352.1 CDS Shal_1124 NC_010334.1 1364332 1366698 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: slo:Shew_1091 phosphoketolase; putative phosphoketolase complement(1364332..1366698) Shewanella halifaxensis HAW-EB4 5905806 YP_001673353.1 CDS Shal_1125 NC_010334.1 1367121 1368602 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO_3541 sodium:alanine symporter family protein; amino acid carrier protein 1367121..1368602 Shewanella halifaxensis HAW-EB4 5905750 YP_001673354.1 CDS Shal_1126 NC_010334.1 1368711 1369484 D PFAM: protein of unknown function DUF328; KEGG: slo:Shew_1093 protein of unknown function DUF328; hypothetical protein 1368711..1369484 Shewanella halifaxensis HAW-EB4 5905751 YP_001673355.1 CDS Shal_1127 NC_010334.1 1370298 1370612 D PFAM: regulatory protein ArsR; KEGG: saz:Sama_0920 transcriptional regulator HlyU; ArsR family transcriptional regulator 1370298..1370612 Shewanella halifaxensis HAW-EB4 5905714 YP_001673356.1 CDS rpsT NC_010334.1 1370832 1371098 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1370832..1371098) Shewanella halifaxensis HAW-EB4 5905715 YP_001673357.1 CDS Shal_1129 NC_010334.1 1371355 1372914 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: slo:Shew_1097 integral membrane protein MviN; integral membrane protein MviN 1371355..1372914 Shewanella halifaxensis HAW-EB4 5905886 YP_001673358.1 CDS Shal_1130 NC_010334.1 1372980 1373915 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: slo:Shew_1098 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1372980..1373915 Shewanella halifaxensis HAW-EB4 5905887 YP_001673359.1 CDS ileS NC_010334.1 1373947 1376769 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1373947..1376769 Shewanella halifaxensis HAW-EB4 5905952 YP_001673360.1 CDS lspA NC_010334.1 1376891 1377403 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1376891..1377403 Shewanella halifaxensis HAW-EB4 5905897 YP_001673361.1 CDS Shal_1133 NC_010334.1 1377409 1377831 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_1101 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1377409..1377831 Shewanella halifaxensis HAW-EB4 5905898 YP_001673362.1 CDS ispH NC_010334.1 1377834 1378763 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1377834..1378763 Shewanella halifaxensis HAW-EB4 5906563 YP_001673363.1 CDS Shal_1135 NC_010334.1 1379009 1379530 D TIGRFAM: type IV pilus modification protein PilV; KEGG: slo:Shew_1103 type IV pilus modification protein PilV; type IV pilus modification protein PilV 1379009..1379530 Shewanella halifaxensis HAW-EB4 5906564 YP_001673364.1 CDS Shal_1136 NC_010334.1 1379531 1380511 D KEGG: slo:Shew_1104 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 1379531..1380511 Shewanella halifaxensis HAW-EB4 5905958 YP_001673365.1 CDS Shal_1137 NC_010334.1 1380524 1380958 D KEGG: slo:Shew_1105 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1380524..1380958 Shewanella halifaxensis HAW-EB4 5905959 YP_001673366.1 CDS Shal_1138 NC_010334.1 1380963 1384559 D KEGG: slo:Shew_1106 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1380963..1384559 Shewanella halifaxensis HAW-EB4 5906813 YP_001673367.1 CDS Shal_1139 NC_010334.1 1384562 1384951 D KEGG: shw:Sputw3181_3098 methylation site containing protein; methylation site containing protein 1384562..1384951 Shewanella halifaxensis HAW-EB4 5906814 YP_001673368.1 CDS Shal_1140 NC_010334.1 1384951 1385259 D KEGG: shm:Shewmr7_3030 hypothetical protein; hypothetical protein 1384951..1385259 Shewanella halifaxensis HAW-EB4 5905474 YP_001673369.1 CDS Shal_1141 NC_010334.1 1385386 1385877 R KEGG: slo:Shew_1108 methylation site containing protein; methylation site containing protein complement(1385386..1385877) Shewanella halifaxensis HAW-EB4 5905475 YP_001673370.1 CDS Shal_1142 NC_010334.1 1386018 1386533 R TIGRFAM: general secretion pathway protein H; KEGG: slo:Shew_1109 type IV pilus biogenesis protein, putative; general secretion pathway protein H complement(1386018..1386533) Shewanella halifaxensis HAW-EB4 5906980 YP_001673371.1 CDS Shal_1143 NC_010334.1 1386779 1387117 D PFAM: nitrogen regulatory protein P-II; KEGG: saz:Sama_0935 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1386779..1387117 Shewanella halifaxensis HAW-EB4 5906804 YP_001673372.1 CDS Shal_1144 NC_010334.1 1387184 1388200 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: saz:Sama_0937 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1387184..1388200) Shewanella halifaxensis HAW-EB4 5906805 YP_001673373.1 CDS Shal_1145 NC_010334.1 1388622 1391249 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_1112 TonB-dependent receptor; TonB-dependent receptor plug 1388622..1391249 Shewanella halifaxensis HAW-EB4 5906634 YP_001673374.1 CDS Shal_1146 NC_010334.1 1391406 1392932 D PFAM: tryptophan halogenase; KEGG: slo:Shew_1113 tryptophan halogenase; tryptophan halogenase 1391406..1392932 Shewanella halifaxensis HAW-EB4 5906635 YP_001673375.1 CDS Shal_1147 NC_010334.1 1392991 1393719 R PFAM: SapC family protein; KEGG: slo:Shew_1114 SapC family protein; SapC family protein complement(1392991..1393719) Shewanella halifaxensis HAW-EB4 5906619 YP_001673376.1 CDS Shal_1148 NC_010334.1 1394433 1397138 D PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; glycoside hydrolase family 20 domain protein; Glycoside hydrolase, family 20, catalytic core; KEGG: spc:Sputcn32_1075 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1394433..1397138 Shewanella halifaxensis HAW-EB4 5906620 YP_001673377.1 CDS Shal_1149 NC_010334.1 1397379 1398275 D PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: she:Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 1397379..1398275 Shewanella halifaxensis HAW-EB4 5906597 YP_001673378.1 CDS Shal_1150 NC_010334.1 1398351 1399484 D KEGG: shw:Sputw3181_3087 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1398351..1399484 Shewanella halifaxensis HAW-EB4 5906598 YP_001673379.1 CDS Shal_1151 NC_010334.1 1399603 1400799 D KEGG: shm:Shewmr7_3014 hypothetical protein; hypothetical protein 1399603..1400799 Shewanella halifaxensis HAW-EB4 5906468 YP_001673380.1 CDS Shal_1152 NC_010334.1 1401086 1402399 D TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: saz:Sama_0948 multiple antibiotic resistance (MarC)-related protein; glucose/galactose transporter 1401086..1402399 Shewanella halifaxensis HAW-EB4 5906461 YP_001673381.1 CDS Shal_1153 NC_010334.1 1404901 1405179 R PFAM: Fe(II) trafficking protein YggX; KEGG: slo:Shew_1122 Fe(II) trafficking protein YggX; hypothetical protein complement(1404901..1405179) Shewanella halifaxensis HAW-EB4 5906051 YP_001673382.1 CDS Shal_1154 NC_010334.1 1405182 1406246 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; KEGG: shw:Sputw3181_1311 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1405182..1406246) Shewanella halifaxensis HAW-EB4 5905946 YP_001673383.1 CDS trmB NC_010334.1 1406497 1407210 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1406497..1407210 Shewanella halifaxensis HAW-EB4 5905707 YP_001673384.1 CDS Shal_1156 NC_010334.1 1407261 1407587 D PFAM: protein of unknown function DUF469; KEGG: sdn:Sden_2696 protein of unknown function DUF469; hypothetical protein 1407261..1407587 Shewanella halifaxensis HAW-EB4 5905708 YP_001673385.1 CDS Shal_1157 NC_010334.1 1407587 1408501 D catalyzes the formation of glutamate from glutamine; glutaminase 1407587..1408501 Shewanella halifaxensis HAW-EB4 5904294 YP_001673386.1 CDS Shal_1158 NC_010334.1 1408746 1409561 D KEGG: sbm:Shew185_3049 hypothetical protein; hypothetical protein 1408746..1409561 Shewanella halifaxensis HAW-EB4 5904295 YP_001673387.1 CDS Shal_1159 NC_010334.1 1409893 1410834 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_1128 transcriptional regulator, LysR family; LysR family transcriptional regulator 1409893..1410834 Shewanella halifaxensis HAW-EB4 5907011 YP_001673388.1 CDS Shal_1160 NC_010334.1 1411596 1413536 D hypothetical protein 1411596..1413536 Shewanella halifaxensis HAW-EB4 5907008 YP_001673389.1 CDS Shal_1161 NC_010334.1 1413613 1414731 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cps:CPS_3436 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1413613..1414731) Shewanella halifaxensis HAW-EB4 5907009 YP_001673390.1 CDS Shal_1162 NC_010334.1 1415185 1415442 D hypothetical protein 1415185..1415442 Shewanella halifaxensis HAW-EB4 5907006 YP_001673391.1 CDS Shal_1163 NC_010334.1 1415621 1416505 D PFAM: regulatory protein LysR; KEGG: vpa:VPA0251 transcriptional regulator, LysR family; LysR family transcriptional regulator 1415621..1416505 Shewanella halifaxensis HAW-EB4 5907007 YP_001673392.1 CDS Shal_1164 NC_010334.1 1416563 1418149 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: lpn:lpg1202 cytochrome D ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(1416563..1418149) Shewanella halifaxensis HAW-EB4 5906981 YP_001673393.1 CDS Shal_1165 NC_010334.1 1418431 1420299 R PFAM: protein of unknown function DUF885; KEGG: sbl:Sbal_3032 protein of unknown function DUF885; hypothetical protein complement(1418431..1420299) Shewanella halifaxensis HAW-EB4 5906982 YP_001673394.1 CDS Shal_1166 NC_010334.1 1420455 1421591 R KEGG: son:SO_3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase complement(1420455..1421591) Shewanella halifaxensis HAW-EB4 5906891 YP_001673395.1 CDS Shal_1167 NC_010334.1 1421591 1422190 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(1421591..1422190) Shewanella halifaxensis HAW-EB4 5906892 YP_001673396.1 CDS Shal_1168 NC_010334.1 1422316 1422750 R KEGG: slo:Shew_1133 hypothetical protein; hypothetical protein complement(1422316..1422750) Shewanella halifaxensis HAW-EB4 5906802 YP_001673397.1 CDS Shal_1169 NC_010334.1 1422834 1423106 R PFAM: protein of unknown function DUF167; KEGG: she:Shewmr4_1190 hypothetical protein; hypothetical protein complement(1422834..1423106) Shewanella halifaxensis HAW-EB4 5906803 YP_001673398.1 CDS Shal_1170 NC_010334.1 1423121 1423669 R PFAM: protein of unknown function YGGT; KEGG: slo:Shew_1135 protein of unknown function YGGT; hypothetical protein complement(1423121..1423669) Shewanella halifaxensis HAW-EB4 5906642 YP_001673399.1 CDS Shal_1171 NC_010334.1 1423705 1424523 R KEGG: sfr:Sfri_2861 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(1423705..1424523) Shewanella halifaxensis HAW-EB4 5906595 YP_001673400.1 CDS Shal_1172 NC_010334.1 1424676 1425377 R PFAM: alanine racemase domain protein; KEGG: sbl:Sbal_3025 alanine racemase domain protein; alanine racemase domain-containing protein complement(1424676..1425377) Shewanella halifaxensis HAW-EB4 5906596 YP_001673401.1 CDS Shal_1173 NC_010334.1 1425413 1426450 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: slo:Shew_1138 twitching motility protein; twitching motility protein 1425413..1426450 Shewanella halifaxensis HAW-EB4 5906561 YP_001673402.1 CDS Shal_1174 NC_010334.1 1426489 1427601 D KEGG: shw:Sputw3181_1326 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1426489..1427601 Shewanella halifaxensis HAW-EB4 5906562 YP_001673403.1 CDS Shal_1175 NC_010334.1 1427710 1428723 D PFAM: ferrochelatase; KEGG: shw:Sputw3181_1328 ferrochelatase; ferrochelatase 1427710..1428723 Shewanella halifaxensis HAW-EB4 5906360 YP_001673404.1 CDS Shal_1176 NC_010334.1 1428823 1429245 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1428823..1429245) Shewanella halifaxensis HAW-EB4 5906361 YP_001673405.1 CDS Shal_1177 NC_010334.1 1429298 1429870 R PFAM: protein of unknown function DUF179; KEGG: slo:Shew_1144 protein of unknown function DUF179; hypothetical protein complement(1429298..1429870) Shewanella halifaxensis HAW-EB4 5906313 YP_001673406.1 CDS Shal_1178 NC_010334.1 1429882 1430211 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1429882..1430211) Shewanella halifaxensis HAW-EB4 5906314 YP_001673407.1 CDS Shal_1179 NC_010334.1 1430341 1430661 R KEGG: sbl:Sbal_3017 hypothetical protein; hypothetical protein complement(1430341..1430661) Shewanella halifaxensis HAW-EB4 5906305 YP_001673408.1 CDS Shal_1180 NC_010334.1 1430826 1431386 D KEGG: slo:Shew_1147 hypothetical protein; hypothetical protein 1430826..1431386 Shewanella halifaxensis HAW-EB4 5906171 YP_001673409.1 CDS Shal_1181 NC_010334.1 1432061 1432939 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; LysR family transcriptional regulator complement(1432061..1432939) Shewanella halifaxensis HAW-EB4 5906172 YP_001673410.1 CDS Shal_1182 NC_010334.1 1433024 1433437 D PFAM: transmembrane pair domain protein; KEGG: vha:VIBHAR_01850 hypothetical protein; transmembrane pair domain-containing protein 1433024..1433437 Shewanella halifaxensis HAW-EB4 5906125 YP_001673411.1 CDS Shal_1183 NC_010334.1 1433681 1435597 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2240 receptor, putative; TonB-dependent receptor plug 1433681..1435597 Shewanella halifaxensis HAW-EB4 5906126 YP_001673412.1 CDS Shal_1184 NC_010334.1 1435899 1436498 D PFAM: OmpA/MotB domain protein; KEGG: sbm:Shew185_3027 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1435899..1436498 Shewanella halifaxensis HAW-EB4 5906117 YP_001673413.1 CDS Shal_1185 NC_010334.1 1436528 1437352 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_1152 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1436528..1437352 Shewanella halifaxensis HAW-EB4 5906118 YP_001673414.1 CDS Shal_1186 NC_010334.1 1437445 1438083 R PFAM: protein of unknown function UPF0126; KEGG: sfr:Sfri_0596 protein of unknown function UPF0126; hypothetical protein complement(1437445..1438083) Shewanella halifaxensis HAW-EB4 5905988 YP_001673415.1 CDS Shal_1187 NC_010334.1 1438422 1439438 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbm:Shew185_3026 threonine aldolase; threonine aldolase 1438422..1439438 Shewanella halifaxensis HAW-EB4 5905989 YP_001673416.1 CDS Shal_1188 NC_010334.1 1439535 1439744 R KEGG: slo:Shew_1160 hypothetical protein; hypothetical protein complement(1439535..1439744) Shewanella halifaxensis HAW-EB4 5904998 YP_001673417.1 CDS Shal_1189 NC_010334.1 1440983 1441516 R PFAM: protein of unknown function DUF442; KEGG: shw:Sputw3181_4004 hypothetical protein; hypothetical protein complement(1440983..1441516) Shewanella halifaxensis HAW-EB4 5904999 YP_001673418.1 CDS Shal_1190 NC_010334.1 1442059 1443582 D PFAM: Integrase catalytic region; KEGG: kpn:KPN_pKPN3p05906 Sea24; integrase catalytic subunit 1442059..1443582 Shewanella halifaxensis HAW-EB4 5904771 YP_001673419.1 CDS Shal_1191 NC_010334.1 1444034 1445335 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_1161 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1444034..1445335) Shewanella halifaxensis HAW-EB4 5904645 YP_001673420.1 CDS Shal_1192 NC_010334.1 1445328 1445606 R hypothetical protein complement(1445328..1445606) Shewanella halifaxensis HAW-EB4 5904646 YP_001673421.1 CDS Shal_1193 NC_010334.1 1445738 1446100 R KEGG: slo:Shew_1162 hypothetical protein; hypothetical protein complement(1445738..1446100) Shewanella halifaxensis HAW-EB4 5904408 YP_001673422.1 CDS Shal_1194 NC_010334.1 1446559 1447716 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1163 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1446559..1447716 Shewanella halifaxensis HAW-EB4 5904409 YP_001673423.1 CDS Shal_1195 NC_010334.1 1447887 1451045 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1447887..1451045 Shewanella halifaxensis HAW-EB4 5904075 YP_001673424.1 CDS Shal_1196 NC_010334.1 1451576 1452724 R PFAM: iron-containing alcohol dehydrogenase; KEGG: slo:Shew_1166 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1451576..1452724) Shewanella halifaxensis HAW-EB4 5904076 YP_001673425.1 CDS Shal_1197 NC_010334.1 1453055 1453573 R PFAM: protein of unknown function DUF88; KEGG: sbl:Sbal_3176 protein of unknown function DUF88; hypothetical protein complement(1453055..1453573) Shewanella halifaxensis HAW-EB4 5906989 YP_001673426.1 CDS Shal_1198 NC_010334.1 1454147 1457254 R PFAM: acriflavin resistance protein; KEGG: spc:Sputcn32_2787 acriflavin resistance protein; acriflavin resistance protein complement(1454147..1457254) Shewanella halifaxensis HAW-EB4 5906990 YP_001673427.1 CDS Shal_1199 NC_010334.1 1457255 1458358 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1457255..1458358) Shewanella halifaxensis HAW-EB4 5905522 YP_001673428.1 CDS Shal_1200 NC_010334.1 1458649 1459719 R PFAM: metallophosphoesterase; KEGG: slo:Shew_1182 metallophosphoesterase; metallophosphoesterase complement(1458649..1459719) Shewanella halifaxensis HAW-EB4 5905899 YP_001673429.1 CDS Shal_1201 NC_010334.1 1459791 1460873 R PFAM: acyltransferase 3; KEGG: vvy:VVA1443 hypothetical protein; acyltransferase 3 complement(1459791..1460873) Shewanella halifaxensis HAW-EB4 5905900 YP_001673430.1 CDS Shal_1202 NC_010334.1 1461214 1462881 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1461214..1462881) Shewanella halifaxensis HAW-EB4 5906245 YP_001673431.1 CDS glyA NC_010334.1 1463160 1464416 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1463160..1464416 Shewanella halifaxensis HAW-EB4 5906246 YP_001673432.1 CDS nrdR NC_010334.1 1464570 1465019 D PFAM: ATP-cone domain protein; KEGG: slo:Shew_1186 ATP-cone domain protein; transcriptional regulator NrdR 1464570..1465019 Shewanella halifaxensis HAW-EB4 5904021 YP_001673433.1 CDS Shal_1205 NC_010334.1 1465088 1466209 D KEGG: son:SO_3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1465088..1466209 Shewanella halifaxensis HAW-EB4 5904022 YP_001673434.1 CDS Shal_1206 NC_010334.1 1466213 1466878 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1466213..1466878 Shewanella halifaxensis HAW-EB4 5906932 YP_001673435.1 CDS Shal_1207 NC_010334.1 1467038 1468141 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: sdn:Sden_1146 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1467038..1468141 Shewanella halifaxensis HAW-EB4 5906933 YP_001673436.1 CDS ribH NC_010334.1 1468287 1468763 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1468287..1468763 Shewanella halifaxensis HAW-EB4 5904290 YP_001673437.1 CDS nusB NC_010334.1 1468778 1469185 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1468778..1469185 Shewanella halifaxensis HAW-EB4 5904291 YP_001673438.1 CDS Shal_1210 NC_010334.1 1469348 1470319 D KEGG: shw:Sputw3181_1239 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1469348..1470319 Shewanella halifaxensis HAW-EB4 5902739 YP_001673439.1 CDS Shal_1211 NC_010334.1 1470319 1470813 D PFAM: phosphatidylglycerophosphatase A; KEGG: slo:Shew_1193 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 1470319..1470813 Shewanella halifaxensis HAW-EB4 5906248 YP_001673440.1 CDS Shal_1212 NC_010334.1 1470897 1472558 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: slo:Shew_1196 DNA repair protein RecN; recombination and repair protein complement(1470897..1472558) Shewanella halifaxensis HAW-EB4 5906249 YP_001673441.1 CDS Shal_1213 NC_010334.1 1473192 1473344 R KEGG: vfi:VF1081 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1473192..1473344) Shewanella halifaxensis HAW-EB4 5906823 YP_001673442.1 CDS Shal_1214 NC_010334.1 1473644 1473967 R KEGG: ppr:PBPRB1507 hypothetical protein; hypothetical protein complement(1473644..1473967) Shewanella halifaxensis HAW-EB4 5906824 YP_001673443.1 CDS Shal_1215 NC_010334.1 1475698 1476600 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1106 transcriptional regulator, LysR family; LysR family transcriptional regulator 1475698..1476600 Shewanella halifaxensis HAW-EB4 5906052 YP_001673444.1 CDS Shal_1216 NC_010334.1 1476722 1477327 R PFAM: protein of unknown function DUF416; KEGG: slo:Shew_1199 protein of unknown function DUF416; hypothetical protein complement(1476722..1477327) Shewanella halifaxensis HAW-EB4 5906053 YP_001673445.1 CDS Shal_1217 NC_010334.1 1477329 1480118 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1477329..1480118) Shewanella halifaxensis HAW-EB4 5906489 YP_001673446.1 CDS rumA NC_010334.1 1480217 1481554 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1480217..1481554 Shewanella halifaxensis HAW-EB4 5906490 YP_001673447.1 CDS Shal_1219 NC_010334.1 1481771 1483978 D KEGG: slo:Shew_1202 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1481771..1483978 Shewanella halifaxensis HAW-EB4 5905949 YP_001673448.1 CDS mazG NC_010334.1 1484116 1484919 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1484116..1484919 Shewanella halifaxensis HAW-EB4 5903956 YP_001673449.1 CDS pyrG NC_010334.1 1485035 1486675 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1485035..1486675 Shewanella halifaxensis HAW-EB4 5903957 YP_001673450.1 CDS eno NC_010334.1 1487068 1488363 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1487068..1488363 Shewanella halifaxensis HAW-EB4 5903912 YP_001673451.1 CDS Shal_1223 NC_010334.1 1488454 1488750 D PFAM: Septum formation initiator; KEGG: slo:Shew_1206 septum formation initiator; septum formation initiator 1488454..1488750 Shewanella halifaxensis HAW-EB4 5903913 YP_001673452.1 CDS ispD NC_010334.1 1488829 1489521 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1488829..1489521 Shewanella halifaxensis HAW-EB4 5903876 YP_001673453.1 CDS ispF NC_010334.1 1489561 1490040 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1489561..1490040 Shewanella halifaxensis HAW-EB4 5903877 YP_001673454.1 CDS Shal_1226 NC_010334.1 1490131 1491195 D PFAM: tRNA pseudouridine synthase D TruD; KEGG: shw:Sputw3181_1259 pseudouridylate synthase; tRNA pseudouridine synthase D TruD 1490131..1491195 Shewanella halifaxensis HAW-EB4 5903840 YP_001673455.1 CDS surE NC_010334.1 1491195 1491947 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1491195..1491947 Shewanella halifaxensis HAW-EB4 5903841 YP_001673456.1 CDS Shal_1228 NC_010334.1 1492049 1492684 D KEGG: sdn:Sden_1202 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1492049..1492684 Shewanella halifaxensis HAW-EB4 5903916 YP_001673457.1 CDS Shal_1229 NC_010334.1 1492749 1493642 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: slo:Shew_1212 peptidase M23B; peptidase M23B 1492749..1493642 Shewanella halifaxensis HAW-EB4 5903917 YP_001673458.1 CDS Shal_1230 NC_010334.1 1493719 1494684 D TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: slo:Shew_1213 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor 1493719..1494684 Shewanella halifaxensis HAW-EB4 5904105 YP_001673459.1 CDS Shal_1231 NC_010334.1 1494804 1497383 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1494804..1497383) Shewanella halifaxensis HAW-EB4 5904112 YP_001673460.1 CDS recA NC_010334.1 1497704 1498771 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1497704..1498771 Shewanella halifaxensis HAW-EB4 5904113 YP_001673461.1 CDS alaS NC_010334.1 1499301 1501925 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1499301..1501925 Shewanella halifaxensis HAW-EB4 5903828 YP_001673462.1 CDS Shal_1234 NC_010334.1 1502439 1502636 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1502439..1502636 Shewanella halifaxensis HAW-EB4 5903829 YP_001673463.1 CDS Shal_1235 NC_010334.1 1504819 1505070 D TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: sfr:Sfri_1065 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma 1504819..1505070 Shewanella halifaxensis HAW-EB4 5903856 YP_001673464.1 CDS Shal_1236 NC_010334.1 1505086 1506897 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1505086..1506897 Shewanella halifaxensis HAW-EB4 5904049 YP_001673465.1 CDS Shal_1237 NC_010334.1 1506906 1508036 D KEGG: sfr:Sfri_1067 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 1506906..1508036 Shewanella halifaxensis HAW-EB4 5907048 YP_001673466.1 CDS Shal_1238 NC_010334.1 1508549 1508734 R KEGG: slo:Shew_1223 hypothetical protein; hypothetical protein complement(1508549..1508734) Shewanella halifaxensis HAW-EB4 5907049 YP_001673467.1 CDS Shal_1239 NC_010334.1 1508834 1510084 R PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_1224 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1508834..1510084) Shewanella halifaxensis HAW-EB4 5903296 YP_001673468.1 CDS Shal_1240 NC_010334.1 1510562 1513399 D PFAM: peptidase M16 domain protein; KEGG: slo:Shew_1226 peptidase M16 domain protein; peptidase M16 domain-containing protein 1510562..1513399 Shewanella halifaxensis HAW-EB4 5904228 YP_001673469.1 CDS Shal_1241 NC_010334.1 1513579 1515147 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1513579..1515147 Shewanella halifaxensis HAW-EB4 5904229 YP_001673470.1 CDS Shal_1242 NC_010334.1 1515177 1515590 D KEGG: slo:Shew_1228 hypothetical protein; hypothetical protein 1515177..1515590 Shewanella halifaxensis HAW-EB4 5904596 YP_001673471.1 CDS Shal_1243 NC_010334.1 1515715 1516332 D KEGG: slo:Shew_1229 hypothetical protein; hypothetical protein 1515715..1516332 Shewanella halifaxensis HAW-EB4 5904597 YP_001673472.1 CDS Shal_1244 NC_010334.1 1516435 1517679 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shn:Shewana3_3157 diguanylate cyclase with GAF sensor; GAF sensor-containing diguanylate cyclase complement(1516435..1517679) Shewanella halifaxensis HAW-EB4 5905309 YP_001673473.1 CDS Shal_1245 NC_010334.1 1518032 1518535 D KEGG: slo:Shew_1230 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1518032..1518535 Shewanella halifaxensis HAW-EB4 5905310 YP_001673474.1 CDS Shal_1246 NC_010334.1 1518787 1519404 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sbl:Sbal_1039 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1518787..1519404 Shewanella halifaxensis HAW-EB4 5905496 YP_001673475.1 CDS Shal_1247 NC_010334.1 1519394 1519960 D KEGG: slo:Shew_1232 hypothetical protein; hypothetical protein 1519394..1519960 Shewanella halifaxensis HAW-EB4 5905497 YP_001673476.1 CDS Shal_1248 NC_010334.1 1520060 1520476 R KEGG: slo:Shew_1233 hypothetical protein; hypothetical protein complement(1520060..1520476) Shewanella halifaxensis HAW-EB4 5905536 YP_001673477.1 CDS Shal_1249 NC_010334.1 1520811 1524089 D PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: shw:Sputw3181_1281 peptidase S41; peptidase S41 1520811..1524089 Shewanella halifaxensis HAW-EB4 5905537 YP_001673478.1 CDS Shal_1250 NC_010334.1 1524417 1525559 D PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1792 hypothetical secretion protein; secretion protein HlyD family protein 1524417..1525559 Shewanella halifaxensis HAW-EB4 5905366 YP_001673479.1 CDS Shal_1251 NC_010334.1 1525549 1526616 D KEGG: ppr:PBPRB1793 hypothetical protein; hypothetical protein 1525549..1526616 Shewanella halifaxensis HAW-EB4 5906366 YP_001673480.1 CDS Shal_1252 NC_010334.1 1526959 1527543 D KEGG: slo:Shew_2686 putative lipoprotein; putative lipoprotein 1526959..1527543 Shewanella halifaxensis HAW-EB4 5906367 YP_001673481.1 CDS Shal_1253 NC_010334.1 1527627 1528073 R PFAM: OsmC family protein; KEGG: sbm:Shew185_1278 OsmC family protein; OsmC family protein complement(1527627..1528073) Shewanella halifaxensis HAW-EB4 5906291 YP_001673482.1 CDS Shal_1254 NC_010334.1 1528422 1528928 R KEGG: sbl:Sbal_1233 hypothetical protein; hypothetical protein complement(1528422..1528928) Shewanella halifaxensis HAW-EB4 5906292 YP_001673483.1 CDS Shal_1255 NC_010334.1 1529118 1529429 R KEGG: sbm:Shew185_1279 hypothetical protein; hypothetical protein complement(1529118..1529429) Shewanella halifaxensis HAW-EB4 5906264 YP_001673484.1 CDS Shal_1256 NC_010334.1 1529447 1531090 R KEGG: spc:Sputcn32_2728 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(1529447..1531090) Shewanella halifaxensis HAW-EB4 5906265 YP_001673485.1 CDS Shal_1257 NC_010334.1 1531094 1531393 R KEGG: sbl:Sbal_0110 hypothetical protein; hypothetical protein complement(1531094..1531393) Shewanella halifaxensis HAW-EB4 5906006 YP_001673486.1 CDS Shal_1258 NC_010334.1 1531992 1532348 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO_3403 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30EA 1531992..1532348 Shewanella halifaxensis HAW-EB4 5906007 YP_001673487.1 CDS Shal_1259 NC_010334.1 1532532 1534460 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vha:VIBHAR_05273 hypothetical protein; potassium efflux system protein complement(1532532..1534460) Shewanella halifaxensis HAW-EB4 5907033 YP_001673488.1 CDS Shal_1260 NC_010334.1 1534460 1535080 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vpa:VPA0465 putative NAD(P)H oxidoreductase; NAD(P)H dehydrogenase (quinone) complement(1534460..1535080) Shewanella halifaxensis HAW-EB4 5904453 YP_001673489.1 CDS Shal_1261 NC_010334.1 1535466 1536677 D PFAM: NnrS family protein; KEGG: shw:Sputw3181_3742 NnrS family protein; NnrS family protein 1535466..1536677 Shewanella halifaxensis HAW-EB4 5904454 YP_001673490.1 CDS Shal_1262 NC_010334.1 1536764 1538173 D PFAM: cytochrome c552; KEGG: slo:Shew_0505 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 1536764..1538173 Shewanella halifaxensis HAW-EB4 5904643 YP_001673491.1 CDS Shal_1263 NC_010334.1 1538356 1538844 D hypothetical protein 1538356..1538844 Shewanella halifaxensis HAW-EB4 5904644 YP_001673492.1 CDS Shal_1264 NC_010334.1 1538890 1539951 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_0202 transcriptional regulator, AraC family; AraC family transcriptional regulator 1538890..1539951 Shewanella halifaxensis HAW-EB4 5904443 YP_001673493.1 CDS Shal_1265 NC_010334.1 1540123 1542135 D PFAM: beta-lactamase domain protein; KEGG: pfo:Pfl_2280 beta-lactamase-like; beta-lactamase domain-containing protein 1540123..1542135 Shewanella halifaxensis HAW-EB4 5904444 YP_001673494.1 CDS fadE NC_010334.1 1543220 1545457 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1543220..1545457) Shewanella halifaxensis HAW-EB4 5904292 YP_001673495.1 CDS Shal_1267 NC_010334.1 1545842 1547029 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1545842..1547029) Shewanella halifaxensis HAW-EB4 5904293 YP_001673496.1 CDS Shal_1268 NC_010334.1 1547555 1548196 R hypothetical protein complement(1547555..1548196) Shewanella halifaxensis HAW-EB4 5904641 YP_001673497.1 CDS Shal_1269 NC_010334.1 1548367 1548705 D hypothetical protein 1548367..1548705 Shewanella halifaxensis HAW-EB4 5904642 YP_001673498.1 CDS Shal_1270 NC_010334.1 1548730 1550031 D PFAM: beta-lactamase; KEGG: ppr:PBPRB1966 hypothetical protein; beta-lactamase 1548730..1550031 Shewanella halifaxensis HAW-EB4 5904511 YP_001673499.1 CDS Shal_1271 NC_010334.1 1550864 1551562 D hypothetical protein 1550864..1551562 Shewanella halifaxensis HAW-EB4 5904499 YP_001673500.1 CDS Shal_1272 NC_010334.1 1551630 1551890 D PFAM: protein of unknown function DUF333; KEGG: sbm:Shew185_0128 protein of unknown function DUF333; hypothetical protein 1551630..1551890 Shewanella halifaxensis HAW-EB4 5904500 YP_001673501.1 CDS Shal_1273 NC_010334.1 1552027 1552545 R KEGG: cps:CPS_3362 putative lipoprotein; putative lipoprotein complement(1552027..1552545) Shewanella halifaxensis HAW-EB4 5904441 YP_001673502.1 CDS Shal_1274 NC_010334.1 1552557 1554716 R KEGG: vfi:VFA0120 hypothetical cytosolic protein; hypothetical protein complement(1552557..1554716) Shewanella halifaxensis HAW-EB4 5904442 YP_001673503.1 CDS Shal_1275 NC_010334.1 1555237 1556412 D PFAM: glycosyl transferase group 1; KEGG: aba:Acid345_4031 glycosyl transferase, group 1; group 1 glycosyl transferase 1555237..1556412 Shewanella halifaxensis HAW-EB4 5904439 YP_001673504.1 CDS Shal_1276 NC_010334.1 1556402 1558612 D PFAM: extracellular solute-binding protein family 3; sodium:dicarboxylate symporter; KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1556402..1558612 Shewanella halifaxensis HAW-EB4 5904440 YP_001673505.1 CDS Shal_1277 NC_010334.1 1558661 1559482 D KEGG: rde:RD1_0117 hypothetical protein; hypothetical protein 1558661..1559482 Shewanella halifaxensis HAW-EB4 5904404 YP_001673506.1 CDS Shal_1278 NC_010334.1 1559511 1560509 R KEGG: cps:CPS_1463 hypothetical protein; hypothetical protein complement(1559511..1560509) Shewanella halifaxensis HAW-EB4 5904405 YP_001673507.1 CDS Shal_1279 NC_010334.1 1560959 1561687 D hypothetical protein 1560959..1561687 Shewanella halifaxensis HAW-EB4 5904268 YP_001673508.1 CDS Shal_1280 NC_010334.1 1561691 1563208 D PFAM: EAL domain protein; KEGG: sec:SC4143 putative diguanylate cyclase/phosphodiesterase; diguanylate phosphodiesterase 1561691..1563208 Shewanella halifaxensis HAW-EB4 5904269 YP_001673509.1 CDS Shal_1281 NC_010334.1 1563328 1563888 R PFAM: CBS domain containing protein; KEGG: mmw:Mmwyl1_2459 CBS domain containing protein; hypothetical protein complement(1563328..1563888) Shewanella halifaxensis HAW-EB4 5904267 YP_001673510.1 CDS Shal_1282 NC_010334.1 1564193 1564915 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 1564193..1564915 Shewanella halifaxensis HAW-EB4 5903286 YP_001673511.1 CDS Shal_1283 NC_010334.1 1565117 1565644 D PFAM: PEBP family protein; KEGG: vfi:VFA0932 putative phospholipid-binding protein; PEBP family protein 1565117..1565644 Shewanella halifaxensis HAW-EB4 5903287 YP_001673512.1 CDS Shal_1284 NC_010334.1 1565690 1566499 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: vfi:VFA0931 transcriptional regulatory, AraC-like; AraC family transcriptional regulator 1565690..1566499 Shewanella halifaxensis HAW-EB4 5903858 YP_001673513.1 CDS Shal_1285 NC_010334.1 1567303 1567644 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: slo:Shew_1931 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 1567303..1567644 Shewanella halifaxensis HAW-EB4 5903859 YP_001673514.1 CDS Shal_1286 NC_010334.1 1567718 1568530 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shm:Shewmr7_0453 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1567718..1568530) Shewanella halifaxensis HAW-EB4 5903420 YP_001673515.1 CDS Shal_1287 NC_010334.1 1568632 1569165 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: she:Shewmr4_3500 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 1568632..1569165 Shewanella halifaxensis HAW-EB4 5903421 YP_001673516.1 CDS Shal_1288 NC_010334.1 1569184 1569621 D PFAM: protein of unknown function DUF417; KEGG: aha:AHA_4046 MC21 protein; hypothetical protein 1569184..1569621 Shewanella halifaxensis HAW-EB4 5903254 YP_001673517.1 CDS Shal_1289 NC_010334.1 1570182 1570508 D KEGG: sdn:Sden_3580 integrase, catalytic region; integrase, catalytic region 1570182..1570508 Shewanella halifaxensis HAW-EB4 5903255 YP_001673518.1 CDS Shal_1291 NC_010334.1 1571347 1572246 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_1422 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1571347..1572246) Shewanella halifaxensis HAW-EB4 5902759 YP_001673519.1 CDS Shal_1292 NC_010334.1 1573256 1573825 D KEGG: sfr:Sfri_3983 methylation site containing protein; hypothetical protein 1573256..1573825 Shewanella halifaxensis HAW-EB4 5903268 YP_001673520.1 CDS Shal_1293 NC_010334.1 1573997 1575580 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: vfi:VFA0475 Sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 1573997..1575580 Shewanella halifaxensis HAW-EB4 5904785 YP_001673521.1 CDS Shal_1294 NC_010334.1 1575702 1576013 D KEGG: cpt:CpB0806 2-cys peroxiredoxin BAS1 precursor; peroxiredoxin-like protein 1575702..1576013 Shewanella halifaxensis HAW-EB4 5904786 YP_001673522.1 CDS Shal_1295 NC_010334.1 1576102 1577742 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: vco:VC0395_A1249 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1576102..1577742 Shewanella halifaxensis HAW-EB4 5904902 YP_001673523.1 CDS Shal_1296 NC_010334.1 1577886 1580855 D KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 1577886..1580855 Shewanella halifaxensis HAW-EB4 5904903 YP_001673524.1 CDS Shal_1297 NC_010334.1 1580874 1581065 R KEGG: shm:Shewmr7_2855 phage integrase family protein; hypothetical protein complement(1580874..1581065) Shewanella halifaxensis HAW-EB4 5904869 YP_001673525.1 CDS Shal_1298 NC_010334.1 1581167 1582357 R KEGG: shn:Shewana3_2687 NAD-dependent DNA ligase (contains BRCT domain type II)-like protein; hypothetical protein complement(1581167..1582357) Shewanella halifaxensis HAW-EB4 5904870 YP_001673526.1 CDS Shal_1299 NC_010334.1 1583979 1584164 R KEGG: shw:Sputw3181_2916 phage integrase family protein; phage integrase family protein complement(1583979..1584164) Shewanella halifaxensis HAW-EB4 5904893 YP_001673527.1 CDS Shal_1300 NC_010334.1 1584532 1585779 D KEGG: nmu:Nmul_A0120 ATP-dependent endonuclease of the OLD family-like; ATP-dependent OLD family endonuclease 1584532..1585779 Shewanella halifaxensis HAW-EB4 5904894 YP_001673528.1 CDS Shal_1301 NC_010334.1 1585772 1586353 D KEGG: nmu:Nmul_A0121 hypothetical protein; hypothetical protein 1585772..1586353 Shewanella halifaxensis HAW-EB4 5904927 YP_001673529.1 CDS Shal_1302 NC_010334.1 1586452 1586625 R KEGG: shw:Sputw3181_2916 phage integrase family protein; phage integrase family protein complement(1586452..1586625) Shewanella halifaxensis HAW-EB4 5904928 YP_001673530.1 CDS Shal_1303 NC_010334.1 1587216 1587716 R KEGG: vvy:VV1784 hypothetical protein; hypothetical protein complement(1587216..1587716) Shewanella halifaxensis HAW-EB4 5904956 YP_001673531.1 CDS Shal_1304 NC_010334.1 1587770 1588795 R PFAM: integrase family protein; KEGG: shw:Sputw3181_2916 phage integrase family protein; integrase family protein complement(1587770..1588795) Shewanella halifaxensis HAW-EB4 5904978 YP_001673532.1 CDS Shal_1305 NC_010334.1 1588796 1589986 R KEGG: shn:Shewana3_2687 NAD-dependent DNA ligase (contains BRCT domain type II)-like protein; hypothetical protein complement(1588796..1589986) Shewanella halifaxensis HAW-EB4 5904979 YP_001673533.1 CDS Shal_1306 NC_010334.1 1590006 1590695 R PFAM: CI repressor; KEGG: sbl:Sbal_1269 bacteriophage CI repressor; CI repressor complement(1590006..1590695) Shewanella halifaxensis HAW-EB4 5905022 YP_001673534.1 CDS Shal_1307 NC_010334.1 1590780 1590986 D KEGG: shm:Shewmr7_0701 hypothetical protein; hypothetical protein 1590780..1590986 Shewanella halifaxensis HAW-EB4 5905023 YP_001673535.1 CDS Shal_1308 NC_010334.1 1591055 1591597 D PFAM: regulatory CII family protein; KEGG: shm:Shewmr7_0702 phage regulatory CII family protein; regulatory CII family protein 1591055..1591597 Shewanella halifaxensis HAW-EB4 5905089 YP_001673536.1 CDS Shal_1309 NC_010334.1 1591610 1592056 D KEGG: shm:Shewmr7_0704 hypothetical protein; hypothetical protein 1591610..1592056 Shewanella halifaxensis HAW-EB4 5905090 YP_001673537.1 CDS Shal_1310 NC_010334.1 1592136 1592375 D KEGG: shm:Shewmr7_0705 hypothetical protein; hypothetical protein 1592136..1592375 Shewanella halifaxensis HAW-EB4 5905093 YP_001673538.1 CDS Shal_1311 NC_010334.1 1592377 1592682 D KEGG: shm:Shewmr7_0706 hypothetical protein; hypothetical protein 1592377..1592682 Shewanella halifaxensis HAW-EB4 5905094 YP_001673539.1 CDS Shal_1312 NC_010334.1 1592876 1593112 D KEGG: sbl:Sbal_1274 hypothetical protein; hypothetical protein 1592876..1593112 Shewanella halifaxensis HAW-EB4 5905101 YP_001673540.1 CDS Shal_1313 NC_010334.1 1593109 1593363 D KEGG: sbl:Sbal_1276 hypothetical protein; hypothetical protein 1593109..1593363 Shewanella halifaxensis HAW-EB4 5905102 YP_001673541.1 CDS Shal_1314 NC_010334.1 1593363 1595663 D PFAM: replication gene A; KEGG: shw:Sputw3181_2905 bacteriophage replication gene A; replication gene A 1593363..1595663 Shewanella halifaxensis HAW-EB4 5905186 YP_001673542.1 CDS Shal_1315 NC_010334.1 1595898 1596284 D hypothetical protein 1595898..1596284 Shewanella halifaxensis HAW-EB4 5905245 YP_001673543.1 CDS Shal_1316 NC_010334.1 1596548 1596799 R PFAM: transcriptional activator Ogr/delta; KEGG: shw:Sputw3181_2904 phage transcriptional activator, Ogr/delta; transcriptional activator Ogr/delta complement(1596548..1596799) Shewanella halifaxensis HAW-EB4 5905246 YP_001673544.1 CDS Shal_1317 NC_010334.1 1596994 1597353 D PFAM: Variant SH3 domain protein; KEGG: bca:BCE_3400 SH3 domain protein; SH3 domain-containing protein 1596994..1597353 Shewanella halifaxensis HAW-EB4 5905311 YP_001673545.1 CDS Shal_1318 NC_010334.1 1597498 1598016 D hypothetical protein 1597498..1598016 Shewanella halifaxensis HAW-EB4 5905312 YP_001673546.1 CDS Shal_1319 NC_010334.1 1598152 1599168 R TIGRFAM: phage portal protein, PBSX family; PFAM: portal protein; KEGG: sbl:Sbal_1281 phage portal protein, PBSX family; PBSX family phage portal protein complement(1598152..1599168) Shewanella halifaxensis HAW-EB4 5905289 YP_001673547.1 CDS Shal_1320 NC_010334.1 1599150 1601003 R PFAM: protein of unknown function DUF264; putative terminase ATPase subunit; KEGG: shm:Shewmr7_0720 protein of unknown function DUF264; hypothetical protein complement(1599150..1601003) Shewanella halifaxensis HAW-EB4 5905290 YP_001673548.1 CDS Shal_1321 NC_010334.1 1601163 1602059 D PFAM: capsid scaffolding; KEGG: shw:Sputw3181_2899 phage capsid scaffolding; capsid scaffolding 1601163..1602059 Shewanella halifaxensis HAW-EB4 5905341 YP_001673549.1 CDS Shal_1322 NC_010334.1 1602109 1603149 D TIGRFAM: phage major capsid protein, P2 family; PFAM: major capsid protein P2; KEGG: shm:Shewmr7_0722 phage major capsid protein, P2 family; P2 family phage major capsid protein 1602109..1603149 Shewanella halifaxensis HAW-EB4 5905342 YP_001673550.1 CDS Shal_1323 NC_010334.1 1603230 1603790 D KEGG: sbl:Sbal_1285 hypothetical protein; hypothetical protein 1603230..1603790 Shewanella halifaxensis HAW-EB4 5905329 YP_001673551.1 CDS Shal_1324 NC_010334.1 1603829 1604503 D PFAM: small terminase subunit; KEGG: shm:Shewmr7_0724 putative phage gene; small terminase subunit 1603829..1604503 Shewanella halifaxensis HAW-EB4 5905330 YP_001673552.1 CDS Shal_1325 NC_010334.1 1604625 1605074 D KEGG: shm:Shewmr7_0725 hypothetical protein; hypothetical protein 1604625..1605074 Shewanella halifaxensis HAW-EB4 5905432 YP_001673553.1 CDS Shal_1326 NC_010334.1 1605071 1605571 D KEGG: shw:Sputw3181_2894 hypothetical protein; hypothetical protein 1605071..1605571 Shewanella halifaxensis HAW-EB4 5905514 YP_001673554.1 CDS Shal_1327 NC_010334.1 1605568 1606221 D KEGG: shw:Sputw3181_2893 hypothetical protein; hypothetical protein 1605568..1606221 Shewanella halifaxensis HAW-EB4 5905515 YP_001673555.1 CDS Shal_1328 NC_010334.1 1606235 1607353 D KEGG: sbl:Sbal_1290 hypothetical protein; hypothetical protein 1606235..1607353 Shewanella halifaxensis HAW-EB4 5905672 YP_001673556.1 CDS Shal_1329 NC_010334.1 1607378 1607827 D KEGG: shm:Shewmr7_0729 prophage PSPPH06, putative tail tube protein; prophage PSPPH06 tail tube protein 1607378..1607827 Shewanella halifaxensis HAW-EB4 5905673 YP_001673557.1 CDS Shal_1330 NC_010334.1 1607841 1608047 D PFAM: zinc finger DksA/TraR C4-type; KEGG: shw:Sputw3181_2890 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 1607841..1608047 Shewanella halifaxensis HAW-EB4 5905619 YP_001673558.1 CDS Shal_1331 NC_010334.1 1608044 1608592 D PFAM: protein of unknown function DUF847; KEGG: shw:Sputw3181_2889 protein of unknown function DUF847; hypothetical protein 1608044..1608592 Shewanella halifaxensis HAW-EB4 5905620 YP_001673559.1 CDS Shal_1332 NC_010334.1 1608602 1608991 D KEGG: plt:Plut_0821 hypothetical protein; hypothetical protein 1608602..1608991 Shewanella halifaxensis HAW-EB4 5905782 YP_001673560.1 CDS Shal_1333 NC_010334.1 1608988 1609254 D KEGG: shw:Sputw3181_2887 hypothetical protein; hypothetical protein 1608988..1609254 Shewanella halifaxensis HAW-EB4 5905783 YP_001673561.1 CDS Shal_1334 NC_010334.1 1609251 1609514 D KEGG: shm:Shewmr7_0735 hypothetical protein; hypothetical protein 1609251..1609514 Shewanella halifaxensis HAW-EB4 5905768 YP_001673562.1 CDS Shal_1335 NC_010334.1 1609747 1611501 D TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: shm:Shewmr7_0736 phage tail tape measure protein, TP901 family; TP901 family phage tail tape measure protein 1609747..1611501 Shewanella halifaxensis HAW-EB4 5905769 YP_001673563.1 CDS Shal_1336 NC_010334.1 1611498 1611851 D KEGG: shm:Shewmr7_0737 hypothetical protein; hypothetical protein 1611498..1611851 Shewanella halifaxensis HAW-EB4 5905727 YP_001673564.1 CDS Shal_1337 NC_010334.1 1611844 1613040 D KEGG: sbl:Sbal_1300 putative bacteriophage protein; putative bacteriophage protein 1611844..1613040 Shewanella halifaxensis HAW-EB4 5905607 YP_001673565.1 CDS Shal_1338 NC_010334.1 1613041 1613703 D KEGG: shm:Shewmr7_0739 hypothetical protein; hypothetical protein 1613041..1613703 Shewanella halifaxensis HAW-EB4 5905608 YP_001673566.1 CDS Shal_1340 NC_010334.1 1616519 1617016 D KEGG: sbl:Sbal_1303 hypothetical protein; hypothetical protein 1616519..1617016 Shewanella halifaxensis HAW-EB4 5903316 YP_001673567.1 CDS Shal_1341 NC_010334.1 1617016 1617705 D KEGG: sbl:Sbal_1304 hypothetical protein; hypothetical protein 1617016..1617705 Shewanella halifaxensis HAW-EB4 5905852 YP_001673568.1 CDS Shal_1342 NC_010334.1 1617718 1618392 D KEGG: shm:Shewmr7_0743 hypothetical protein; hypothetical protein 1617718..1618392 Shewanella halifaxensis HAW-EB4 5905853 YP_001673569.1 CDS Shal_1343 NC_010334.1 1618416 1618613 D KEGG: shm:Shewmr7_0744 hypothetical protein; hypothetical protein 1618416..1618613 Shewanella halifaxensis HAW-EB4 5906447 YP_001673570.1 CDS Shal_1344 NC_010334.1 1618761 1619126 D hypothetical protein 1618761..1619126 Shewanella halifaxensis HAW-EB4 5906448 YP_001673571.1 CDS smpB NC_010334.1 1620316 1620810 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1620316..1620810) Shewanella halifaxensis HAW-EB4 5906681 YP_001673572.1 CDS Shal_1346 NC_010334.1 1621003 1621434 D PFAM: cyclase/dehydrase; KEGG: slo:Shew_1269 cyclase/dehydrase; cyclase/dehydrase 1621003..1621434 Shewanella halifaxensis HAW-EB4 5905868 YP_001673573.1 CDS Shal_1347 NC_010334.1 1621431 1621763 D PFAM: protein of unknown function UPF0125; KEGG: slo:Shew_1270 protein of unknown function UPF0125; hypothetical protein 1621431..1621763 Shewanella halifaxensis HAW-EB4 5906851 YP_001673574.1 CDS Shal_1348 NC_010334.1 1621862 1622356 R PFAM: SmpA/OmlA domain protein; KEGG: slo:Shew_1271 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein complement(1621862..1622356) Shewanella halifaxensis HAW-EB4 5906777 YP_001673575.1 CDS Shal_1349 NC_010334.1 1622862 1623668 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: slo:Shew_1272 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1622862..1623668 Shewanella halifaxensis HAW-EB4 5906778 YP_001673576.1 CDS Shal_1350 NC_010334.1 1623746 1623958 D KEGG: slo:Shew_1273 hypothetical protein; hypothetical protein 1623746..1623958 Shewanella halifaxensis HAW-EB4 5906716 YP_001673577.1 CDS Shal_1351 NC_010334.1 1623942 1625750 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shn:Shewana3_2946 diguanylate cyclase; diguanylate cyclase 1623942..1625750 Shewanella halifaxensis HAW-EB4 5906717 YP_001673578.1 CDS Shal_1352 NC_010334.1 1626595 1628232 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1626595..1628232 Shewanella halifaxensis HAW-EB4 5906707 YP_001673579.1 CDS Shal_1353 NC_010334.1 1628611 1630089 D PFAM: Metal-dependent hydrolase HDOD; KEGG: slo:Shew_1277 putative signal transduction protein; putative signal transduction protein 1628611..1630089 Shewanella halifaxensis HAW-EB4 5906708 YP_001673580.1 CDS Shal_1354 NC_010334.1 1630264 1630755 R KEGG: shm:Shewmr7_1280 hypothetical protein; hypothetical protein complement(1630264..1630755) Shewanella halifaxensis HAW-EB4 5906666 YP_001673581.1 CDS Shal_1355 NC_010334.1 1630815 1631639 R PFAM: protein of unknown function DUF980; KEGG: son:SO_3335 hypothetical protein; hypothetical protein complement(1630815..1631639) Shewanella halifaxensis HAW-EB4 5906667 YP_001673582.1 CDS Shal_1356 NC_010334.1 1631904 1632350 R KEGG: slo:Shew_1280 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(1631904..1632350) Shewanella halifaxensis HAW-EB4 5906505 YP_001673583.1 CDS Shal_1357 NC_010334.1 1632310 1633053 R KEGG: slo:Shew_1281 hypothetical protein; hypothetical protein complement(1632310..1633053) Shewanella halifaxensis HAW-EB4 5906464 YP_001673584.1 CDS Shal_1358 NC_010334.1 1633661 1633894 D KEGG: slo:Shew_1282 hypothetical protein; hypothetical protein 1633661..1633894 Shewanella halifaxensis HAW-EB4 5906465 YP_001673585.1 CDS Shal_1359 NC_010334.1 1634073 1634375 D KEGG: slo:Shew_1283 NrfJ-related protein; NrfJ-like protein 1634073..1634375 Shewanella halifaxensis HAW-EB4 5906299 YP_001673586.1 CDS Shal_1360 NC_010334.1 1634543 1635052 D PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_1284 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1634543..1635052 Shewanella halifaxensis HAW-EB4 5906300 YP_001673587.1 CDS Shal_1361 NC_010334.1 1635144 1635683 D PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_3014 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1635144..1635683 Shewanella halifaxensis HAW-EB4 5906101 YP_001673588.1 CDS Shal_1362 NC_010334.1 1635786 1637552 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: slo:Shew_1285 5'-nucleotidase; 5'-nucleotidase complement(1635786..1637552) Shewanella halifaxensis HAW-EB4 5906102 YP_001673589.1 CDS Shal_1363 NC_010334.1 1637763 1638833 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO_3316 hypothetical protein; hypothetical protein complement(1637763..1638833) Shewanella halifaxensis HAW-EB4 5906081 YP_001673590.1 CDS Shal_1364 NC_010334.1 1638993 1640114 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1638993..1640114 Shewanella halifaxensis HAW-EB4 5906082 YP_001673591.1 CDS Shal_1365 NC_010334.1 1640135 1640935 D KEGG: slo:Shew_1288 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1640135..1640935 Shewanella halifaxensis HAW-EB4 5905872 YP_001673592.1 CDS Shal_1366 NC_010334.1 1640935 1641918 D KEGG: sfr:Sfri_1115 hypothetical protein; hypothetical protein 1640935..1641918 Shewanella halifaxensis HAW-EB4 5905873 YP_001673593.1 CDS ispG NC_010334.1 1641941 1643056 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1641941..1643056 Shewanella halifaxensis HAW-EB4 5905775 YP_001673594.1 CDS hisS NC_010334.1 1643194 1644468 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1643194..1644468 Shewanella halifaxensis HAW-EB4 5907016 YP_001673595.1 CDS Shal_1369 NC_010334.1 1644483 1645103 D KEGG: slo:Shew_1292 tetratricopeptide TPR_4; hypothetical protein 1644483..1645103 Shewanella halifaxensis HAW-EB4 5907017 YP_001673596.1 CDS Shal_1370 NC_010334.1 1645115 1646302 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1645115..1646302 Shewanella halifaxensis HAW-EB4 5906951 YP_001673597.1 CDS engA NC_010334.1 1646388 1647860 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1646388..1647860 Shewanella halifaxensis HAW-EB4 5906952 YP_001673598.1 CDS Shal_1372 NC_010334.1 1648363 1648944 D KEGG: slo:Shew_1147 hypothetical protein; hypothetical protein 1648363..1648944 Shewanella halifaxensis HAW-EB4 5906893 YP_001673599.1 CDS Shal_1373 NC_010334.1 1649627 1651075 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: nma:NMA1126 putative transmembrane transport protein; uracil-xanthine permease 1649627..1651075 Shewanella halifaxensis HAW-EB4 5906894 YP_001673600.1 CDS Shal_1374 NC_010334.1 1651426 1653051 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0365 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1651426..1653051) Shewanella halifaxensis HAW-EB4 5906574 YP_001673601.1 CDS xseA NC_010334.1 1653551 1654888 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1653551..1654888) Shewanella halifaxensis HAW-EB4 5906575 YP_001673602.1 CDS Shal_1376 NC_010334.1 1655008 1656480 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1655008..1656480 Shewanella halifaxensis HAW-EB4 5905736 YP_001673603.1 CDS guaA NC_010334.1 1656605 1658182 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1656605..1658182 Shewanella halifaxensis HAW-EB4 5905737 YP_001673604.1 CDS Shal_1378 NC_010334.1 1658751 1659242 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: shm:Shewmr7_1307 CMP/dCMP deaminase, zinc-binding protein; zinc-binding CMP/dCMP deaminase 1658751..1659242 Shewanella halifaxensis HAW-EB4 5906854 YP_001673605.1 CDS Shal_1379 NC_010334.1 1659565 1660992 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1659565..1660992) Shewanella halifaxensis HAW-EB4 5906549 YP_001673606.1 CDS Shal_1380 NC_010334.1 1661297 1665178 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1661297..1665178 Shewanella halifaxensis HAW-EB4 5906550 YP_001673607.1 CDS Shal_1381 NC_010334.1 1666385 1667941 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: slo:Shew_1302 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1666385..1667941 Shewanella halifaxensis HAW-EB4 5906482 YP_001673608.1 CDS Shal_1382 NC_010334.1 1667957 1669096 D KEGG: slo:Shew_1303 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1667957..1669096 Shewanella halifaxensis HAW-EB4 5906483 YP_001673609.1 CDS Shal_1383 NC_010334.1 1669112 1669228 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: slo:Shew_1304 cyd operon protein YbgT; cyd operon protein YbgT 1669112..1669228 Shewanella halifaxensis HAW-EB4 5906449 YP_001673610.1 CDS Shal_1384 NC_010334.1 1669731 1670303 R hypothetical protein complement(1669731..1670303) Shewanella halifaxensis HAW-EB4 5906450 YP_001673611.1 CDS Shal_1385 NC_010334.1 1670528 1672531 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_1310 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1670528..1672531) Shewanella halifaxensis HAW-EB4 5906329 YP_001673612.1 CDS Shal_1387 NC_010334.1 1673013 1676105 R PFAM: acriflavin resistance protein; KEGG: slo:Shew_1311 acriflavin resistance protein; acriflavin resistance protein complement(1673013..1676105) Shewanella halifaxensis HAW-EB4 5906274 YP_001673613.1 CDS Shal_1388 NC_010334.1 1676111 1677223 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1312 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1676111..1677223) Shewanella halifaxensis HAW-EB4 5906275 YP_001673614.1 CDS Shal_1389 NC_010334.1 1677418 1678032 D PFAM: regulatory protein TetR; KEGG: she:Shewmr4_1247 transcriptional regulator, TetR family; TetR family transcriptional regulator 1677418..1678032 Shewanella halifaxensis HAW-EB4 5906198 YP_001673615.1 CDS Shal_1390 NC_010334.1 1678101 1678676 R KEGG: sbm:Shew185_2984 hypothetical protein; hypothetical protein complement(1678101..1678676) Shewanella halifaxensis HAW-EB4 5905999 YP_001673616.1 CDS Shal_1391 NC_010334.1 1678708 1679187 R KEGG: slo:Shew_1316 hypothetical protein; hypothetical protein complement(1678708..1679187) Shewanella halifaxensis HAW-EB4 5906000 YP_001673617.1 CDS Shal_1392 NC_010334.1 1679298 1681727 R KEGG: shw:Sputw3181_1377 protein of unknown function DUF115; hypothetical protein complement(1679298..1681727) Shewanella halifaxensis HAW-EB4 5906024 YP_001673618.1 CDS Shal_1393 NC_010334.1 1682056 1683057 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: spc:Sputcn32_2629 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 1682056..1683057 Shewanella halifaxensis HAW-EB4 5906025 YP_001673619.1 CDS Shal_1394 NC_010334.1 1683054 1684202 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: shw:Sputw3181_1379 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1683054..1684202 Shewanella halifaxensis HAW-EB4 5905974 YP_001673620.1 CDS Shal_1395 NC_010334.1 1684245 1685453 R PFAM: acylneuraminate cytidylyltransferase; KEGG: son:SO_3269 cytidylyltransferase domain protein; acylneuraminate cytidylyltransferase complement(1684245..1685453) Shewanella halifaxensis HAW-EB4 5905975 YP_001673621.1 CDS Shal_1396 NC_010334.1 1685457 1687406 R PFAM: glycoside hydrolase family 57; KEGG: son:SO_3268 alpha amylase domain protein; glycoside hydrolase family protein complement(1685457..1687406) Shewanella halifaxensis HAW-EB4 5904791 YP_001673622.1 CDS Shal_1397 NC_010334.1 1687760 1688740 D KEGG: gme:Gmet_0454 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 1687760..1688740 Shewanella halifaxensis HAW-EB4 5904792 YP_001673623.1 CDS Shal_1398 NC_010334.1 1688858 1689781 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0453 hypothetical protein; type 12 methyltransferase 1688858..1689781 Shewanella halifaxensis HAW-EB4 5903260 YP_001673624.1 CDS Shal_1399 NC_010334.1 1689813 1691024 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbl:Sbal_2962 methyltransferase type 11; type 11 methyltransferase 1689813..1691024 Shewanella halifaxensis HAW-EB4 5903261 YP_001673625.1 CDS Shal_1400 NC_010334.1 1691027 1692805 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbl:Sbal_2961 transketolase, central region; transketolase central region 1691027..1692805 Shewanella halifaxensis HAW-EB4 5903709 YP_001673626.1 CDS Shal_1401 NC_010334.1 1692805 1693557 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbl:Sbal_2960 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1692805..1693557 Shewanella halifaxensis HAW-EB4 5902680 YP_001673627.1 CDS Shal_1402 NC_010334.1 1693561 1694793 D PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; KEGG: sbl:Sbal_2959 phosphoribosylglycinamide synthetase; hypothetical protein 1693561..1694793 Shewanella halifaxensis HAW-EB4 5902681 YP_001673628.1 CDS Shal_1403 NC_010334.1 1694900 1695760 R PFAM: N-acetylneuraminic acid synthase domain; KEGG: son:SO_3261 polysaccharide biosynthesis related-protein; N-acetylneuraminic acid synthase domain-containing protein complement(1694900..1695760) Shewanella halifaxensis HAW-EB4 5906218 YP_001673629.1 CDS Shal_1404 NC_010334.1 1696310 1697062 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pin:Ping_2637 methyltransferase type 12; type 11 methyltransferase 1696310..1697062 Shewanella halifaxensis HAW-EB4 5906219 YP_001673630.1 CDS Shal_1405 NC_010334.1 1697441 1698706 D PFAM: sodium:dicarboxylate symporter; KEGG: vfi:VF0647 proton/sodium-glutamate symport protein; sodium:dicarboxylate symporter 1697441..1698706 Shewanella halifaxensis HAW-EB4 5906443 YP_001673631.1 CDS Shal_1406 NC_010334.1 1698803 1700161 R PFAM: beta-lactamase domain protein; KEGG: rba:RB11482 alkyl sulfatase or beta-lactamase; beta-lactamase domain-containing protein complement(1698803..1700161) Shewanella halifaxensis HAW-EB4 5906444 YP_001673632.1 CDS Shal_1407 NC_010334.1 1700241 1701074 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1700241..1701074) Shewanella halifaxensis HAW-EB4 5904980 YP_001673633.1 CDS Shal_1408 NC_010334.1 1701957 1703189 D KEGG: shn:Shewana3_0711 response regulator receiver protein; TIGRFAM: hydrogenase, Fe-only; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; hydrogenase large subunit domain protein; hydrogenase, Fe-only 1701957..1703189 Shewanella halifaxensis HAW-EB4 5904981 YP_001673634.1 CDS Shal_1409 NC_010334.1 1703204 1703524 D PFAM: iron hydrogenase small subunit; KEGG: shn:Shewana3_0710 iron hydrogenase, small subunit; iron hydrogenase small subunit 1703204..1703524 Shewanella halifaxensis HAW-EB4 5905363 YP_001673635.1 CDS Shal_1410 NC_010334.1 1703538 1704218 D KEGG: shn:Shewana3_0709 formate dehydrogenase, putative; formate dehydrogenase 1703538..1704218 Shewanella halifaxensis HAW-EB4 5905364 YP_001673636.1 CDS thiH NC_010334.1 1704310 1705752 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1704310..1705752 Shewanella halifaxensis HAW-EB4 5905375 YP_001673637.1 CDS Shal_1412 NC_010334.1 1705792 1706406 D KEGG: son:SO_3924 hypothetical protein; hypothetical protein 1705792..1706406 Shewanella halifaxensis HAW-EB4 5904743 YP_001673638.1 CDS Shal_1413 NC_010334.1 1706418 1707440 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1706418..1707440 Shewanella halifaxensis HAW-EB4 5904744 YP_001673639.1 CDS Shal_1414 NC_010334.1 1707442 1708683 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: shn:Shewana3_0705 small GTP-binding protein; small GTP-binding protein 1707442..1708683 Shewanella halifaxensis HAW-EB4 5906239 YP_001673640.1 CDS Shal_1415 NC_010334.1 1709701 1710696 D KEGG: pin:Ping_3114 beta-lactamase domain protein; beta-lactamase domain-containing protein 1709701..1710696 Shewanella halifaxensis HAW-EB4 5906240 YP_001673641.1 CDS Shal_1416 NC_010334.1 1710689 1712155 D KEGG: pin:Ping_3113 hypothetical protein; hypothetical protein 1710689..1712155 Shewanella halifaxensis HAW-EB4 5905488 YP_001673642.1 CDS Shal_1417 NC_010334.1 1712142 1714655 D PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: pin:Ping_3112 ATP-dependent RNA helicase, DEAD box family protein; helicase domain-containing protein 1712142..1714655 Shewanella halifaxensis HAW-EB4 5905489 YP_001673643.1 CDS Shal_1418 NC_010334.1 1714965 1716086 R KEGG: ana:all0796 unknown protein; hypothetical protein complement(1714965..1716086) Shewanella halifaxensis HAW-EB4 5906422 YP_001673644.1 CDS Shal_1419 NC_010334.1 1716793 1717962 R KEGG: slo:Shew_1337 hypothetical protein; hypothetical protein complement(1716793..1717962) Shewanella halifaxensis HAW-EB4 5906410 YP_001673645.1 CDS Shal_1420 NC_010334.1 1718419 1719048 D KEGG: slo:Shew_1338 hypothetical protein; hypothetical protein 1718419..1719048 Shewanella halifaxensis HAW-EB4 5904214 YP_001673646.1 CDS Shal_1421 NC_010334.1 1719049 1719495 D PFAM: protein of unknown function DUF400; KEGG: slo:Shew_1339 protein of unknown function DUF400; hypothetical protein 1719049..1719495 Shewanella halifaxensis HAW-EB4 5904141 YP_001673647.1 CDS Shal_1422 NC_010334.1 1720190 1720615 R PFAM: FlgN family protein; KEGG: slo:Shew_1340 FlgN family protein; FlgN family protein complement(1720190..1720615) Shewanella halifaxensis HAW-EB4 5904142 YP_001673648.1 CDS Shal_1423 NC_010334.1 1720691 1721005 R PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sbm:Shew185_2966 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM complement(1720691..1721005) Shewanella halifaxensis HAW-EB4 5904134 YP_001673649.1 CDS flgA NC_010334.1 1721153 1721926 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1721153..1721926) Shewanella halifaxensis HAW-EB4 5904135 YP_001673650.1 CDS Shal_1425 NC_010334.1 1722147 1723067 D PFAM: response regulator receiver; CheW domain protein; KEGG: sfr:Sfri_1159 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1722147..1723067 Shewanella halifaxensis HAW-EB4 5902858 YP_001673651.1 CDS Shal_1426 NC_010334.1 1723208 1724041 D PFAM: MCP methyltransferase CheR-type; KEGG: shm:Shewmr7_1328 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 1723208..1724041 Shewanella halifaxensis HAW-EB4 5902859 YP_001673652.1 CDS flgB NC_010334.1 1724217 1724615 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1724217..1724615 Shewanella halifaxensis HAW-EB4 5904203 YP_001673653.1 CDS flgC NC_010334.1 1724618 1725034 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1724618..1725034 Shewanella halifaxensis HAW-EB4 5904204 YP_001673654.1 CDS flgD NC_010334.1 1725060 1725863 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1725060..1725863 Shewanella halifaxensis HAW-EB4 5903809 YP_001673655.1 CDS flgE NC_010334.1 1725952 1727313 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1725952..1727313 Shewanella halifaxensis HAW-EB4 5903810 YP_001673656.1 CDS flgF NC_010334.1 1727770 1728513 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1727770..1728513 Shewanella halifaxensis HAW-EB4 5903790 YP_001673657.1 CDS flgG NC_010334.1 1728524 1729312 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1728524..1729312 Shewanella halifaxensis HAW-EB4 5903958 YP_001673658.1 CDS flgH NC_010334.1 1729335 1730009 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1729335..1730009 Shewanella halifaxensis HAW-EB4 5903959 YP_001673659.1 CDS flgI NC_010334.1 1730044 1731138 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1730044..1731138 Shewanella halifaxensis HAW-EB4 5904143 YP_001673660.1 CDS flgJ NC_010334.1 1731167 1732273 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1731167..1732273 Shewanella halifaxensis HAW-EB4 5904144 YP_001673661.1 CDS Shal_1436 NC_010334.1 1732317 1734236 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: slo:Shew_1354 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1732317..1734236 Shewanella halifaxensis HAW-EB4 5903788 YP_001673662.1 CDS flgL NC_010334.1 1734300 1735490 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1734300..1735490 Shewanella halifaxensis HAW-EB4 5903789 YP_001673663.1 CDS Shal_1438 NC_010334.1 1735585 1736406 D PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1735585..1736406 Shewanella halifaxensis HAW-EB4 5905698 YP_001673664.1 CDS Shal_1439 NC_010334.1 1736714 1737532 D PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1736714..1737532 Shewanella halifaxensis HAW-EB4 5905699 YP_001673665.1 CDS Shal_1440 NC_010334.1 1737674 1738060 D PFAM: flagellar protein FlaG protein; KEGG: slo:Shew_1358 flagellar protein FlaG protein; flagellar protein FlaG protein 1737674..1738060 Shewanella halifaxensis HAW-EB4 5906152 YP_001673666.1 CDS Shal_1441 NC_010334.1 1738103 1739467 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: slo:Shew_1359 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 1738103..1739467 Shewanella halifaxensis HAW-EB4 5906153 YP_001673667.1 CDS Shal_1442 NC_010334.1 1739499 1739819 D KEGG: slo:Shew_1360 hypothetical protein; hypothetical protein 1739499..1739819 Shewanella halifaxensis HAW-EB4 5906188 YP_001673668.1 CDS fliS NC_010334.1 1739826 1740236 D flagellin specific chaperone; flagellar protein FliS 1739826..1740236 Shewanella halifaxensis HAW-EB4 5903932 YP_001673669.1 CDS Shal_1444 NC_010334.1 1740519 1741952 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: slo:Shew_1362 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1740519..1741952 Shewanella halifaxensis HAW-EB4 5903933 YP_001673670.1 CDS Shal_1445 NC_010334.1 1742467 1743591 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: sbm:Shew185_2939 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor-containing signal transduction histidine kinase 1742467..1743591 Shewanella halifaxensis HAW-EB4 5903928 YP_001673671.1 CDS Shal_1446 NC_010334.1 1743584 1744936 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_1180 two component, sigma54 specific, transcriptional regulator, fis family protein; Fis family two component sigma54 specific transcriptional regulator 1743584..1744936 Shewanella halifaxensis HAW-EB4 5903929 YP_001673672.1 CDS Shal_1447 NC_010334.1 1745473 1745805 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sbl:Sbal_2927 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 1745473..1745805 Shewanella halifaxensis HAW-EB4 5903923 YP_001673673.1 CDS fliF NC_010334.1 1745848 1747548 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1745848..1747548 Shewanella halifaxensis HAW-EB4 5903924 YP_001673674.1 CDS fliG NC_010334.1 1747538 1748584 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1747538..1748584 Shewanella halifaxensis HAW-EB4 5903704 YP_001673675.1 CDS Shal_1450 NC_010334.1 1748584 1749567 D PFAM: flagellar assembly protein FliH; KEGG: shn:Shewana3_1344 flagellar assembly protein FliH; flagellar assembly protein FliH 1748584..1749567 Shewanella halifaxensis HAW-EB4 5903705 YP_001673676.1 CDS fliI NC_010334.1 1749536 1750876 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1749536..1750876 Shewanella halifaxensis HAW-EB4 5904047 YP_001673677.1 CDS Shal_1452 NC_010334.1 1750952 1751398 D TIGRFAM: flagellar export protein FliJ; KEGG: son:SO_3224 flagellar protein FliJ; flagellar export protein FliJ 1750952..1751398 Shewanella halifaxensis HAW-EB4 5904048 YP_001673678.1 CDS Shal_1453 NC_010334.1 1751674 1753185 D PFAM: flagellar hook-length control protein; KEGG: slo:Shew_1371 flagellar hook-length control protein; flagellar hook-length control protein 1751674..1753185 Shewanella halifaxensis HAW-EB4 5903758 YP_001673679.1 CDS fliL NC_010334.1 1753250 1753768 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1753250..1753768 Shewanella halifaxensis HAW-EB4 5903678 YP_001673680.1 CDS fliM NC_010334.1 1753814 1754842 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1753814..1754842 Shewanella halifaxensis HAW-EB4 5903679 YP_001673681.1 CDS fliN NC_010334.1 1754855 1755232 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1754855..1755232 Shewanella halifaxensis HAW-EB4 5903544 YP_001673682.1 CDS Shal_1457 NC_010334.1 1755245 1755616 D PFAM: flagellar biosynthesis protein FliO; KEGG: slo:Shew_1375 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 1755245..1755616 Shewanella halifaxensis HAW-EB4 5903545 YP_001673683.1 CDS fliP NC_010334.1 1755613 1756362 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1755613..1756362 Shewanella halifaxensis HAW-EB4 5903549 YP_001673684.1 CDS Shal_1459 NC_010334.1 1756370 1756639 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: slo:Shew_1377 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1756370..1756639 Shewanella halifaxensis HAW-EB4 5903550 YP_001673685.1 CDS fliR NC_010334.1 1756754 1757551 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1756754..1757551 Shewanella halifaxensis HAW-EB4 5903586 YP_001673686.1 CDS flhB NC_010334.1 1757618 1758751 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1757618..1758751 Shewanella halifaxensis HAW-EB4 5903587 YP_001673687.1 CDS flhA NC_010334.1 1758900 1760999 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1758900..1760999 Shewanella halifaxensis HAW-EB4 5904825 YP_001673688.1 CDS flhF NC_010334.1 1761011 1762423 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1761011..1762423 Shewanella halifaxensis HAW-EB4 5904826 YP_001673689.1 CDS Shal_1464 NC_010334.1 1762410 1763309 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_1382 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1762410..1763309 Shewanella halifaxensis HAW-EB4 5904684 YP_001673690.1 CDS fliA NC_010334.1 1763302 1764021 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1763302..1764021 Shewanella halifaxensis HAW-EB4 5904627 YP_001673691.1 CDS Shal_1466 NC_010334.1 1764082 1764465 D PFAM: response regulator receiver; KEGG: slo:Shew_1384 response regulator receiver protein; response regulator receiver protein 1764082..1764465 Shewanella halifaxensis HAW-EB4 5904628 YP_001673692.1 CDS Shal_1467 NC_010334.1 1764479 1765216 D PFAM: Chemotaxis phosphatase CheZ; KEGG: saz:Sama_2278 putative chemotaxis phosphatase, CheZ; chemotaxis phosphatase CheZ 1764479..1765216 Shewanella halifaxensis HAW-EB4 5904592 YP_001673693.1 CDS Shal_1468 NC_010334.1 1765229 1767532 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: slo:Shew_1386 CheA signal transduction histidine kinase; signal transduction histidine kinase CheA 1765229..1767532 Shewanella halifaxensis HAW-EB4 5904593 YP_001673694.1 CDS Shal_1469 NC_010334.1 1767620 1768810 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1767620..1768810 Shewanella halifaxensis HAW-EB4 5904546 YP_001673695.1 CDS Shal_1470 NC_010334.1 1768803 1769525 D KEGG: slo:Shew_1388 hypothetical protein; hypothetical protein 1768803..1769525 Shewanella halifaxensis HAW-EB4 5904547 YP_001673696.1 CDS Shal_1471 NC_010334.1 1769625 1770416 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_1389 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1769625..1770416 Shewanella halifaxensis HAW-EB4 5904230 YP_001673697.1 CDS Shal_1472 NC_010334.1 1770400 1771341 D PFAM: CheW domain protein; KEGG: slo:Shew_1390 CheW protein; CheW protein 1770400..1771341 Shewanella halifaxensis HAW-EB4 5904231 YP_001673698.1 CDS Shal_1473 NC_010334.1 1771654 1772145 D PFAM: CheW domain protein; KEGG: slo:Shew_1391 CheW protein; CheW protein 1771654..1772145 Shewanella halifaxensis HAW-EB4 5903464 YP_001673699.1 CDS Shal_1474 NC_010334.1 1772302 1772706 D KEGG: shn:Shewana3_1368 hypothetical protein; hypothetical protein 1772302..1772706 Shewanella halifaxensis HAW-EB4 5903465 YP_001673700.1 CDS Shal_1475 NC_010334.1 1773158 1773466 R KEGG: slo:Shew_1393 FlhB domain protein; FlhB domain-containing protein complement(1773158..1773466) Shewanella halifaxensis HAW-EB4 5905370 YP_001673701.1 CDS Shal_1476 NC_010334.1 1773583 1775133 R KEGG: son:SO_3198 hypothetical protein; hypothetical protein complement(1773583..1775133) Shewanella halifaxensis HAW-EB4 5905387 YP_001673702.1 CDS Shal_1477 NC_010334.1 1775519 1776289 D PFAM: VacJ family lipoprotein; KEGG: sbl:Sbal_2897 VacJ family lipoprotein; VacJ family lipoprotein 1775519..1776289 Shewanella halifaxensis HAW-EB4 5905388 YP_001673703.1 CDS Shal_1478 NC_010334.1 1776386 1777492 D PFAM: response regulator receiver; KEGG: shm:Shewmr7_1379 response regulator receiver protein; response regulator receiver protein 1776386..1777492 Shewanella halifaxensis HAW-EB4 5905563 YP_001673704.1 CDS Shal_1479 NC_010334.1 1777479 1778117 R KEGG: ptr:749610 hypothetical protein LOC749610; hypothetical protein complement(1777479..1778117) Shewanella halifaxensis HAW-EB4 5905564 YP_001673705.1 CDS Shal_1480 NC_010334.1 1778816 1779169 D PFAM: S23 ribosomal protein; KEGG: vfi:VF0154 hypothetical protein; S23 ribosomal protein 1778816..1779169 Shewanella halifaxensis HAW-EB4 5905534 YP_001673706.1 CDS Shal_1481 NC_010334.1 1779657 1781162 R KEGG: sbl:Sbal_2895 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter complement(1779657..1781162) Shewanella halifaxensis HAW-EB4 5905535 YP_001673707.1 CDS Shal_1482 NC_010334.1 1781604 1782140 D TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; KEGG: slo:Shew_1398 NusG antitermination factor; transcriptional acivator RfaH 1781604..1782140 Shewanella halifaxensis HAW-EB4 5905866 YP_001673708.1 CDS Shal_1483 NC_010334.1 1783501 1786275 D PFAM: polysaccharide export protein; KEGG: slo:Shew_1399 polysaccharide export protein; polysaccharide export protein 1783501..1786275 Shewanella halifaxensis HAW-EB4 5905867 YP_001673709.1 CDS Shal_1484 NC_010334.1 1786380 1786775 D crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 1786380..1786775 Shewanella halifaxensis HAW-EB4 5905928 YP_001673710.1 CDS Shal_1485 NC_010334.1 1786839 1787816 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 1786839..1787816 Shewanella halifaxensis HAW-EB4 5905929 YP_001673711.1 CDS Shal_1486 NC_010334.1 1788071 1789225 D NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1788071..1789225 Shewanella halifaxensis HAW-EB4 5906877 YP_001673712.1 CDS Shal_1487 NC_010334.1 1789222 1790109 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: spc:Sputcn32_2539 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1789222..1790109 Shewanella halifaxensis HAW-EB4 5906297 YP_001673713.1 CDS Shal_1488 NC_010334.1 1790109 1790990 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pin:Ping_3463 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1790109..1790990 Shewanella halifaxensis HAW-EB4 5906298 YP_001673714.1 CDS Shal_1489 NC_010334.1 1790995 1791549 D KEGG: sfr:Sfri_2827 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1790995..1791549 Shewanella halifaxensis HAW-EB4 5905970 YP_001673715.1 CDS Shal_1490 NC_010334.1 1791556 1793094 D PFAM: polysaccharide biosynthesis protein; KEGG: bfr:BF1533 hypothetical protein; polysaccharide biosynthesis protein 1791556..1793094 Shewanella halifaxensis HAW-EB4 5905971 YP_001673716.1 CDS Shal_1491 NC_010334.1 1793108 1794127 D PFAM: glycosyl transferase family 2; KEGG: pat:Patl_3065 glycosyl transferase, family 2; glycosyl transferase family protein 1793108..1794127 Shewanella halifaxensis HAW-EB4 5906608 YP_001673717.1 CDS Shal_1492 NC_010334.1 1794184 1795545 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; 4Fe-4S ferredoxin 1794184..1795545 Shewanella halifaxensis HAW-EB4 5906609 YP_001673718.1 CDS Shal_1493 NC_010334.1 1795614 1796723 D KEGG: maq:Maqu_2618 hypothetical protein; hypothetical protein 1795614..1796723 Shewanella halifaxensis HAW-EB4 5906515 YP_001673719.1 CDS Shal_1494 NC_010334.1 1796710 1797609 D PFAM: glycosyl transferase family 2; KEGG: tel:tlr2318 probable glycosyl transferase; glycosyl transferase family protein 1796710..1797609 Shewanella halifaxensis HAW-EB4 5906516 YP_001673720.1 CDS Shal_1495 NC_010334.1 1797627 1798823 D KEGG: sas:SAS0105 hypothetical protein; hypothetical protein 1797627..1798823 Shewanella halifaxensis HAW-EB4 5906512 YP_001673721.1 CDS Shal_1496 NC_010334.1 1798798 1799994 D PFAM: glycosyl transferase group 1; KEGG: gvi:glr0463 probable glycosyltransferase; group 1 glycosyl transferase 1798798..1799994 Shewanella halifaxensis HAW-EB4 5906513 YP_001673722.1 CDS Shal_1497 NC_010334.1 1800054 1801109 D PFAM: Protein of unknown function DUF1972; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1; hypothetical protein 1800054..1801109 Shewanella halifaxensis HAW-EB4 5906201 YP_001673723.1 CDS Shal_1498 NC_010334.1 1801152 1802228 D TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sfr:Sfri_2825 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1801152..1802228 Shewanella halifaxensis HAW-EB4 5906130 YP_001673724.1 CDS Shal_1499 NC_010334.1 1802396 1803442 D TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sfr:Sfri_2824 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1802396..1803442 Shewanella halifaxensis HAW-EB4 5906131 YP_001673725.1 CDS Shal_1500 NC_010334.1 1803807 1805300 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sfr:Sfri_2820 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(1803807..1805300) Shewanella halifaxensis HAW-EB4 5904369 YP_001673726.1 CDS Shal_1501 NC_010334.1 1805885 1807054 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: she:Shewmr4_1330 UDP-glucose 6-dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 1805885..1807054 Shewanella halifaxensis HAW-EB4 5904370 YP_001673727.1 CDS Shal_1502 NC_010334.1 1807480 1808490 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shn:Shewana3_4089 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1807480..1808490 Shewanella halifaxensis HAW-EB4 5906107 YP_001673728.1 CDS Shal_1503 NC_010334.1 1809065 1809634 D KEGG: sdn:Sden_2548 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1809065..1809634 Shewanella halifaxensis HAW-EB4 5906108 YP_001673729.1 CDS Shal_1504 NC_010334.1 1810030 1811427 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sbl:Sbal_2320 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(1810030..1811427) Shewanella halifaxensis HAW-EB4 5905307 YP_001673730.1 CDS Shal_1505 NC_010334.1 1811427 1811882 R KEGG: shn:Shewana3_2003 glycerol-3-phosphate cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase complement(1811427..1811882) Shewanella halifaxensis HAW-EB4 5905308 YP_001673731.1 CDS Shal_1506 NC_010334.1 1811935 1813377 R KEGG: shn:Shewana3_2004 nucleotidyl transferase; nucleotidyl transferase complement(1811935..1813377) Shewanella halifaxensis HAW-EB4 5904503 YP_001673732.1 CDS Shal_1507 NC_010334.1 1813388 1815556 R KEGG: shn:Shewana3_2005 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(1813388..1815556) Shewanella halifaxensis HAW-EB4 5904504 YP_001673733.1 CDS Shal_1508 NC_010334.1 1815775 1816884 R PFAM: glycosyl transferase family 2; KEGG: shn:Shewana3_2006 glycosyl transferase, family 2; glycosyl transferase family protein complement(1815775..1816884) Shewanella halifaxensis HAW-EB4 5904996 YP_001673734.1 CDS Shal_1509 NC_010334.1 1816874 1818217 R PFAM: polysaccharide biosynthesis protein; KEGG: shn:Shewana3_2007 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1816874..1818217) Shewanella halifaxensis HAW-EB4 5906684 YP_001673735.1 CDS Shal_1510 NC_010334.1 1818748 1820016 R KEGG: shn:Shewana3_2008 hypothetical protein; hypothetical protein complement(1818748..1820016) Shewanella halifaxensis HAW-EB4 5906685 YP_001673736.1 CDS Shal_1511 NC_010334.1 1819974 1821383 R KEGG: shn:Shewana3_2009 hypothetical protein; hypothetical protein complement(1819974..1821383) Shewanella halifaxensis HAW-EB4 5903731 YP_001673737.1 CDS Shal_1512 NC_010334.1 1821408 1822709 R PFAM: polysaccharide export protein; KEGG: shn:Shewana3_2010 polysaccharide export protein; polysaccharide export protein complement(1821408..1822709) Shewanella halifaxensis HAW-EB4 5903732 YP_001673738.1 CDS Shal_1513 NC_010334.1 1822722 1823087 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: shn:Shewana3_2011 anti-sigma-factor antagonist; anti-sigma-factor antagonist complement(1822722..1823087) Shewanella halifaxensis HAW-EB4 5904588 YP_001673739.1 CDS Shal_1514 NC_010334.1 1824161 1824550 R KEGG: shn:Shewana3_2012 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor complement(1824161..1824550) Shewanella halifaxensis HAW-EB4 5904589 YP_001673740.1 CDS Shal_1515 NC_010334.1 1824560 1825795 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: shn:Shewana3_2013 response regulator receiver modulated serine phosphatase; response regulator receiver modulated serine phosphatase complement(1824560..1825795) Shewanella halifaxensis HAW-EB4 5905662 YP_001673741.1 CDS Shal_1516 NC_010334.1 1826107 1826973 D KEGG: shn:Shewana3_2014 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1826107..1826973 Shewanella halifaxensis HAW-EB4 5905663 YP_001673742.1 CDS Shal_1517 NC_010334.1 1826973 1830515 D KEGG: shn:Shewana3_2015 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1826973..1830515 Shewanella halifaxensis HAW-EB4 5905978 YP_001673743.1 CDS Shal_1518 NC_010334.1 1830631 1832142 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: shn:Shewana3_2016 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 1830631..1832142 Shewanella halifaxensis HAW-EB4 5905979 YP_001673744.1 CDS Shal_1519 NC_010334.1 1832276 1833025 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfr:Sfri_3709 PHP C-terminal domain protein; putative hydrolase 1832276..1833025 Shewanella halifaxensis HAW-EB4 5906651 YP_001673745.1 CDS Shal_1520 NC_010334.1 1833063 1834190 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: she:Shewmr4_2618 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1833063..1834190 Shewanella halifaxensis HAW-EB4 5906652 YP_001673746.1 CDS Shal_1521 NC_010334.1 1834620 1836086 R KEGG: slo:Shew_1426 hypothetical protein; hypothetical protein complement(1834620..1836086) Shewanella halifaxensis HAW-EB4 5906353 YP_001673747.1 CDS Shal_1522 NC_010334.1 1836376 1838925 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbm:Shew185_1185 glycoside hydrolase family 3 domain protein; glycoside hydrolase family 3 1836376..1838925 Shewanella halifaxensis HAW-EB4 5906354 YP_001673748.1 CDS Shal_1523 NC_010334.1 1839228 1840013 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: slo:Shew_1427 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1839228..1840013 Shewanella halifaxensis HAW-EB4 5905706 YP_001673749.1 CDS Shal_1524 NC_010334.1 1840113 1841006 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1840113..1841006 Shewanella halifaxensis HAW-EB4 5905730 YP_001673750.1 CDS Shal_1525 NC_010334.1 1841173 1841934 D PFAM: protein of unknown function DUF218; KEGG: slo:Shew_1429 protein of unknown function DUF218; hypothetical protein 1841173..1841934 Shewanella halifaxensis HAW-EB4 5905731 YP_001673751.1 CDS Shal_1526 NC_010334.1 1842390 1843055 D KEGG: sfr:Sfri_1323 hypothetical protein; hypothetical protein 1842390..1843055 Shewanella halifaxensis HAW-EB4 5905680 YP_001673752.1 CDS Shal_1527 NC_010334.1 1843146 1843568 R PFAM: protein of unknown function DUF583; KEGG: slo:Shew_1431 protein of unknown function DUF583; hypothetical protein complement(1843146..1843568) Shewanella halifaxensis HAW-EB4 5905681 YP_001673753.1 CDS Shal_1528 NC_010334.1 1843671 1844150 R TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_2718 ferredoxin-type protein NapF; ferredoxin-type protein NapF complement(1843671..1844150) Shewanella halifaxensis HAW-EB4 5905352 YP_001673754.1 CDS Shal_1529 NC_010334.1 1844331 1845350 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shn:Shewana3_2783 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1844331..1845350) Shewanella halifaxensis HAW-EB4 5905353 YP_001673755.1 CDS Shal_1530 NC_010334.1 1845436 1846344 R KEGG: sbm:Shew185_1478 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(1845436..1846344) Shewanella halifaxensis HAW-EB4 5903445 YP_001673756.1 CDS phhA NC_010334.1 1846792 1847583 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1846792..1847583 Shewanella halifaxensis HAW-EB4 5903446 YP_001673757.1 CDS phhB NC_010334.1 1847656 1847994 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1847656..1847994 Shewanella halifaxensis HAW-EB4 5903329 YP_001673758.1 CDS Shal_1533 NC_010334.1 1848208 1849755 D PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: slo:Shew_1437 transcriptional regulator, TyrR; transcriptional regulator TyrR 1848208..1849755 Shewanella halifaxensis HAW-EB4 5903330 YP_001673759.1 CDS Shal_1534 NC_010334.1 1850016 1851002 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sbm:Shew185_1482 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1850016..1851002 Shewanella halifaxensis HAW-EB4 5904365 YP_001673760.1 CDS Shal_1535 NC_010334.1 1851114 1851764 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: shm:Shewmr7_2670 maleylacetoacetate isomerase; maleylacetoacetate isomerase 1851114..1851764 Shewanella halifaxensis HAW-EB4 5904366 YP_001673761.1 CDS Shal_1536 NC_010334.1 1851923 1852834 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1691 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1851923..1852834) Shewanella halifaxensis HAW-EB4 5904668 YP_001673762.1 CDS Shal_1537 NC_010334.1 1853012 1854241 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_1441 major facilitator superfamily MFS_1; major facilitator transporter 1853012..1854241 Shewanella halifaxensis HAW-EB4 5903950 YP_001673763.1 CDS Shal_1538 NC_010334.1 1854346 1854573 R KEGG: slo:Shew_1448 hypothetical protein; hypothetical protein complement(1854346..1854573) Shewanella halifaxensis HAW-EB4 5903951 YP_001673764.1 CDS gltX NC_010334.1 1856456 1857865 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1856456..1857865 Shewanella halifaxensis HAW-EB4 5903706 YP_001673765.1 CDS Shal_1540 NC_010334.1 1860322 1862151 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_1451 ABC transporter-related protein; ABC transporter-like protein complement(1860322..1862151) Shewanella halifaxensis HAW-EB4 5905625 YP_001673766.1 CDS Shal_1541 NC_010334.1 1862328 1863830 D PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: shm:Shewmr7_1432 transcriptional regulator, AraC family; AraC family transcriptional regulator 1862328..1863830 Shewanella halifaxensis HAW-EB4 5905716 YP_001673767.1 CDS Shal_1542 NC_010334.1 1863827 1864390 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: son:SO_3126 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1863827..1864390 Shewanella halifaxensis HAW-EB4 5904383 YP_001673768.1 CDS Shal_1543 NC_010334.1 1864577 1865905 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_1454 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1864577..1865905 Shewanella halifaxensis HAW-EB4 5904384 YP_001673769.1 CDS Shal_1544 NC_010334.1 1866114 1866584 D PFAM: Dual specificity protein phosphatase; KEGG: shw:Sputw3181_1514 dual specificity protein phosphatase; dual specificity protein phosphatase 1866114..1866584 Shewanella halifaxensis HAW-EB4 5906303 YP_001673770.1 CDS Shal_1545 NC_010334.1 1866611 1868155 D PFAM: phospholipase D/Transphosphatidylase; KEGG: slo:Shew_1456 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1866611..1868155 Shewanella halifaxensis HAW-EB4 5906304 YP_001673771.1 CDS Shal_1546 NC_010334.1 1868247 1869149 D PFAM: response regulator receiver; CheW domain protein; KEGG: slo:Shew_1457 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1868247..1869149 Shewanella halifaxensis HAW-EB4 5905831 YP_001673772.1 CDS Shal_1547 NC_010334.1 1869330 1870553 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1869330..1870553 Shewanella halifaxensis HAW-EB4 5905832 YP_001673773.1 CDS Shal_1548 NC_010334.1 1870628 1870834 R KEGG: sbm:Shew185_2813 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(1870628..1870834) Shewanella halifaxensis HAW-EB4 5904963 YP_001673774.1 CDS Shal_1549 NC_010334.1 1871168 1871578 D KEGG: slo:Shew_1459 hypothetical protein; hypothetical protein 1871168..1871578 Shewanella halifaxensis HAW-EB4 5904923 YP_001673775.1 CDS Shal_1550 NC_010334.1 1871662 1872330 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_1442 pseudouridylate synthase; lysozyme complement(1871662..1872330) Shewanella halifaxensis HAW-EB4 5904924 YP_001673776.1 CDS Shal_1551 NC_010334.1 1872474 1873067 R PFAM: protein of unknown function DUF479; KEGG: slo:Shew_2339 protein of unknown function DUF479; hypothetical protein complement(1872474..1873067) Shewanella halifaxensis HAW-EB4 5904437 YP_001673777.1 CDS Shal_1552 NC_010334.1 1873233 1873406 D KEGG: shn:Shewana3_1433 hypothetical protein; hypothetical protein 1873233..1873406 Shewanella halifaxensis HAW-EB4 5904438 YP_001673778.1 CDS queA NC_010334.1 1873524 1874561 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1873524..1874561 Shewanella halifaxensis HAW-EB4 5902723 YP_001673779.1 CDS tgt NC_010334.1 1874742 1875875 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1874742..1875875 Shewanella halifaxensis HAW-EB4 5902724 YP_001673780.1 CDS yajC NC_010334.1 1875903 1876235 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1875903..1876235 Shewanella halifaxensis HAW-EB4 5902638 YP_001673781.1 CDS secD NC_010334.1 1876253 1878103 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1876253..1878103 Shewanella halifaxensis HAW-EB4 5902639 YP_001673782.1 CDS secF NC_010334.1 1878117 1879064 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1878117..1879064 Shewanella halifaxensis HAW-EB4 5906745 YP_001673783.1 CDS Shal_1558 NC_010334.1 1879321 1879638 D KEGG: slo:Shew_2333 hypothetical protein; hypothetical protein 1879321..1879638 Shewanella halifaxensis HAW-EB4 5906746 YP_001673784.1 CDS Shal_1559 NC_010334.1 1879638 1879997 D PFAM: Rhodanese domain protein; KEGG: saz:Sama_2188 rhodanese-like protein; rhodanese domain-containing protein 1879638..1879997 Shewanella halifaxensis HAW-EB4 5902653 YP_001673785.1 CDS Shal_1560 NC_010334.1 1880034 1880945 D TIGRFAM: siroheme synthase; KEGG: saz:Sama_2187 precorrin-2 oxidase / ferrochelatase; siroheme synthase 1880034..1880945 Shewanella halifaxensis HAW-EB4 5902654 YP_001673786.1 CDS Shal_1561 NC_010334.1 1881097 1881642 D PFAM: YaeQ family protein; KEGG: shw:Sputw3181_1530 YaeQ family protein; YaeQ family protein 1881097..1881642 Shewanella halifaxensis HAW-EB4 5906088 YP_001673787.1 CDS Shal_1562 NC_010334.1 1881743 1883182 R PFAM: carbon starvation protein CstA; KEGG: slo:Shew_2330 carbon starvation protein CstA; carbon starvation protein CstA complement(1881743..1883182) Shewanella halifaxensis HAW-EB4 5903032 YP_001673788.1 CDS Shal_1563 NC_010334.1 1883318 1884028 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(1883318..1884028) Shewanella halifaxensis HAW-EB4 5903033 YP_001673789.1 CDS Shal_1564 NC_010334.1 1884032 1885705 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: shm:Shewmr7_2501 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS complement(1884032..1885705) Shewanella halifaxensis HAW-EB4 5903119 YP_001673790.1 CDS Shal_1565 NC_010334.1 1885946 1886188 D KEGG: sfr:Sfri_1783 hypothetical protein; hypothetical protein 1885946..1886188 Shewanella halifaxensis HAW-EB4 5903120 YP_001673791.1 CDS Shal_1566 NC_010334.1 1886374 1886664 R PFAM: type IV pilus assembly PilZ; KEGG: saz:Sama_1286 hypothetical protein; type IV pilus assembly PilZ complement(1886374..1886664) Shewanella halifaxensis HAW-EB4 5906964 YP_001673792.1 CDS Shal_1567 NC_010334.1 1886859 1887266 R PFAM: phosphate-starvation-inducible E; KEGG: shn:Shewana3_2588 phosphate-starvation-inducible E; phosphate-starvation-inducible E complement(1886859..1887266) Shewanella halifaxensis HAW-EB4 5906965 YP_001673793.1 CDS Shal_1568 NC_010334.1 1887487 1888287 R PFAM: inositol monophosphatase; KEGG: slo:Shew_2321 inositol monophosphatase; inositol-phosphate phosphatase complement(1887487..1888287) Shewanella halifaxensis HAW-EB4 5904239 YP_001673794.1 CDS Shal_1569 NC_010334.1 1888444 1889199 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shw:Sputw3181_1859 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1888444..1889199 Shewanella halifaxensis HAW-EB4 5904240 YP_001673795.1 CDS Shal_1570 NC_010334.1 1889225 1890046 D TIGRFAM: serine O-acetyltransferase; KEGG: she:Shewmr4_1737 serine O-acetyltransferase; serine O-acetyltransferase 1889225..1890046 Shewanella halifaxensis HAW-EB4 5903087 YP_001673796.1 CDS Shal_1571 NC_010334.1 1890243 1890704 D TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: slo:Shew_2318 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 1890243..1890704 Shewanella halifaxensis HAW-EB4 5903088 YP_001673797.1 CDS Shal_1572 NC_010334.1 1890787 1892001 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1890787..1892001 Shewanella halifaxensis HAW-EB4 5903137 YP_001673798.1 CDS Shal_1573 NC_010334.1 1892042 1892425 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: slo:Shew_2316 FeS cluster assembly scaffold IscU; scaffold protein 1892042..1892425 Shewanella halifaxensis HAW-EB4 5903138 YP_001673799.1 CDS Shal_1574 NC_010334.1 1892440 1892763 D TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: slo:Shew_2315 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 1892440..1892763 Shewanella halifaxensis HAW-EB4 5904598 YP_001673800.1 CDS hscB NC_010334.1 1892782 1893306 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1892782..1893306 Shewanella halifaxensis HAW-EB4 5904793 YP_001673801.1 CDS hscA NC_010334.1 1893376 1895238 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1893376..1895238 Shewanella halifaxensis HAW-EB4 5904794 YP_001673802.1 CDS Shal_1577 NC_010334.1 1895247 1895582 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: slo:Shew_2312 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1895247..1895582 Shewanella halifaxensis HAW-EB4 5905035 YP_001673803.1 CDS Shal_1578 NC_010334.1 1895855 1896052 D PFAM: protein of unknown function DUF528; KEGG: slo:Shew_2311 protein of unknown function DUF528; hypothetical protein 1895855..1896052 Shewanella halifaxensis HAW-EB4 5905036 YP_001673804.1 CDS Shal_1579 NC_010334.1 1896270 1896434 D KEGG: saz:Sama_1300 hypothetical protein; hypothetical protein 1896270..1896434 Shewanella halifaxensis HAW-EB4 5905031 YP_001673805.1 CDS ndk NC_010334.1 1896663 1897094 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1896663..1897094 Shewanella halifaxensis HAW-EB4 5905032 YP_001673806.1 CDS Shal_1581 NC_010334.1 1897918 1900671 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_2416 TonB-dependent receptor; TonB-dependent receptor 1897918..1900671 Shewanella halifaxensis HAW-EB4 5905136 YP_001673807.1 CDS Shal_1582 NC_010334.1 1900775 1901131 R KEGG: shn:Shewana3_2453 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(1900775..1901131) Shewanella halifaxensis HAW-EB4 5905137 YP_001673808.1 CDS Shal_1583 NC_010334.1 1901250 1902233 R PFAM: dihydrouridine synthase DuS; KEGG: son:SO_2006 NifR3/Smm1 family protein; dihydrouridine synthase DuS complement(1901250..1902233) Shewanella halifaxensis HAW-EB4 5905159 YP_001673809.1 CDS Shal_1584 NC_010334.1 1902571 1903020 D KEGG: slo:Shew_2241 hypothetical protein; hypothetical protein 1902571..1903020 Shewanella halifaxensis HAW-EB4 5905160 YP_001673810.1 CDS Shal_1585 NC_010334.1 1903119 1903961 D PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sbm:Shew185_2620 protein of unknown function DUF692; hypothetical protein 1903119..1903961 Shewanella halifaxensis HAW-EB4 5905404 YP_001673811.1 CDS Shal_1586 NC_010334.1 1903961 1904716 D KEGG: sdn:Sden_2385 hypothetical protein; hypothetical protein 1903961..1904716 Shewanella halifaxensis HAW-EB4 5905405 YP_001673812.1 CDS Shal_1587 NC_010334.1 1904806 1904925 D KEGG: sfr:Sfri_2410 hypothetical protein; hypothetical protein 1904806..1904925 Shewanella halifaxensis HAW-EB4 5905458 YP_001673813.1 CDS Shal_1588 NC_010334.1 1904999 1905367 D PFAM: protein of unknown function DUF454; KEGG: slo:Shew_2237 protein of unknown function DUF454; hypothetical protein 1904999..1905367 Shewanella halifaxensis HAW-EB4 5906008 YP_001673814.1 CDS Shal_1589 NC_010334.1 1905624 1906175 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1905624..1906175 Shewanella halifaxensis HAW-EB4 5906009 YP_001673815.1 CDS Shal_1590 NC_010334.1 1906374 1909166 D KEGG: slo:Shew_2235 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1906374..1909166 Shewanella halifaxensis HAW-EB4 5906084 YP_001673816.1 CDS Shal_1591 NC_010334.1 1909267 1909596 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_2234 conserved hypothetical protein 103; hypothetical protein 1909267..1909596 Shewanella halifaxensis HAW-EB4 5906085 YP_001673817.1 CDS Shal_1592 NC_010334.1 1909833 1910399 R KEGG: pin:Ping_1731 galactoside O-acetyltransferase; acetyltransferase complement(1909833..1910399) Shewanella halifaxensis HAW-EB4 5906237 YP_001673818.1 CDS Shal_1593 NC_010334.1 1910914 1911600 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpp:lpp2174 hypothetical protein; Sel1 domain-containing protein 1910914..1911600 Shewanella halifaxensis HAW-EB4 5906238 YP_001673819.1 CDS Shal_1594 NC_010334.1 1911603 1912523 D hypothetical protein 1911603..1912523 Shewanella halifaxensis HAW-EB4 5906251 YP_001673820.1 CDS recR NC_010334.1 1912899 1913498 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1912899..1913498 Shewanella halifaxensis HAW-EB4 5906252 YP_001673821.1 CDS Shal_1596 NC_010334.1 1913688 1915607 D molecular chaperone; heat shock protein 90 1913688..1915607 Shewanella halifaxensis HAW-EB4 5906428 YP_001673822.1 CDS Shal_1597 NC_010334.1 1915690 1916535 D PFAM: Thioredoxin domain; KEGG: slo:Shew_2231 thioredoxin domain protein; thioredoxin domain-containing protein 1915690..1916535 Shewanella halifaxensis HAW-EB4 5906429 YP_001673823.1 CDS adk NC_010334.1 1916716 1917360 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1916716..1917360 Shewanella halifaxensis HAW-EB4 5906506 YP_001673824.1 CDS hemH NC_010334.1 1917536 1918531 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1917536..1918531 Shewanella halifaxensis HAW-EB4 5906507 YP_001673825.1 CDS Shal_1600 NC_010334.1 1918772 1920100 D PFAM: PfkB domain protein; KEGG: son:SO_2020 inosine-guanosine kinase; inosine kinase 1918772..1920100 Shewanella halifaxensis HAW-EB4 5906603 YP_001673826.1 CDS Shal_1601 NC_010334.1 1920228 1920782 D PFAM: transferase hexapeptide repeat containing protein; KEGG: vpa:VPA0209 hexapeptide-repeat containing-acetyltransferase; hexapaptide repeat-containing transferase 1920228..1920782 Shewanella halifaxensis HAW-EB4 5906617 YP_001673827.1 CDS Shal_1602 NC_010334.1 1920946 1922271 R PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_1657 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1920946..1922271) Shewanella halifaxensis HAW-EB4 5906618 YP_001673828.1 CDS Shal_1603 NC_010334.1 1922490 1924973 D PFAM: Ig domain protein group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 1922490..1924973 Shewanella halifaxensis HAW-EB4 5906660 YP_001673829.1 CDS Shal_1604 NC_010334.1 1925047 1926384 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(1925047..1926384) Shewanella halifaxensis HAW-EB4 5906661 YP_001673830.1 CDS Shal_1605 NC_010334.1 1926721 1929402 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1926721..1929402 Shewanella halifaxensis HAW-EB4 5906701 YP_001673831.1 CDS Shal_1606 NC_010334.1 1929601 1930377 R KEGG: slo:Shew_1623 hypothetical protein; hypothetical protein complement(1929601..1930377) Shewanella halifaxensis HAW-EB4 5906702 YP_001673832.1 CDS cysB NC_010334.1 1930604 1931578 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1930604..1931578 Shewanella halifaxensis HAW-EB4 5906835 YP_001673833.1 CDS Shal_1608 NC_010334.1 1931674 1933050 R KEGG: she:Shewmr4_1725 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1931674..1933050) Shewanella halifaxensis HAW-EB4 5906836 YP_001673834.1 CDS Shal_1609 NC_010334.1 1933455 1934462 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1933455..1934462 Shewanella halifaxensis HAW-EB4 5907039 YP_001673835.1 CDS Shal_1610 NC_010334.1 1934536 1935072 D PFAM: protein of unknown function UPF0227; KEGG: slo:Shew_1627 protein of unknown function UPF0227; hypothetical protein 1934536..1935072 Shewanella halifaxensis HAW-EB4 5907040 YP_001673836.1 CDS Shal_1611 NC_010334.1 1935259 1935528 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1935259..1935528 Shewanella halifaxensis HAW-EB4 5906001 YP_001673837.1 CDS Shal_1612 NC_010334.1 1935531 1936547 R KEGG: sfr:Sfri_2400 hypothetical protein; hypothetical protein complement(1935531..1936547) Shewanella halifaxensis HAW-EB4 5906002 YP_001673838.1 CDS Shal_1613 NC_010334.1 1936550 1940023 R KEGG: slo:Shew_1630 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(1936550..1940023) Shewanella halifaxensis HAW-EB4 5906014 YP_001673839.1 CDS Shal_1614 NC_010334.1 1940113 1940721 R KEGG: she:Shewmr4_1731 hypothetical protein; hypothetical protein complement(1940113..1940721) Shewanella halifaxensis HAW-EB4 5906189 YP_001673840.1 CDS Shal_1615 NC_010334.1 1940960 1942183 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: sbl:Sbal_2404 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1940960..1942183 Shewanella halifaxensis HAW-EB4 5906190 YP_001673841.1 CDS Shal_1616 NC_010334.1 1942204 1942941 D KEGG: spc:Sputcn32_2155 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1942204..1942941 Shewanella halifaxensis HAW-EB4 5906270 YP_001673842.1 CDS Shal_1617 NC_010334.1 1942938 1944191 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: slo:Shew_1634 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1942938..1944191 Shewanella halifaxensis HAW-EB4 5906271 YP_001673843.1 CDS Shal_1618 NC_010334.1 1944339 1944719 R KEGG: sfr:Sfri_0576 hypothetical protein; hypothetical protein complement(1944339..1944719) Shewanella halifaxensis HAW-EB4 5906295 YP_001673844.1 CDS Shal_1619 NC_010334.1 1944940 1945854 D KEGG: slo:Shew_1461 zinc carboxypeptidase-related protein; zinc carboxypeptidase-like protein 1944940..1945854 Shewanella halifaxensis HAW-EB4 5906296 YP_001673845.1 CDS Shal_1620 NC_010334.1 1946330 1946788 D KEGG: sbm:Shew185_0087 hypothetical protein; hypothetical protein 1946330..1946788 Shewanella halifaxensis HAW-EB4 5906383 YP_001673846.1 CDS Shal_1621 NC_010334.1 1946936 1947496 R PFAM: protein of unknown function DUF991; KEGG: slo:Shew_1489 protein of unknown function DUF991; hypothetical protein complement(1946936..1947496) Shewanella halifaxensis HAW-EB4 5906384 YP_001673847.1 CDS Shal_1622 NC_010334.1 1947588 1948097 R KEGG: shm:Shewmr7_2287 hypothetical protein; hypothetical protein complement(1947588..1948097) Shewanella halifaxensis HAW-EB4 5906606 YP_001673848.1 CDS Shal_1623 NC_010334.1 1948309 1949142 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein 1948309..1949142 Shewanella halifaxensis HAW-EB4 5906607 YP_001673849.1 CDS Shal_1624 NC_010334.1 1949185 1950711 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shw:Sputw3181_1728 MATE efflux family protein; MATE efflux family protein 1949185..1950711 Shewanella halifaxensis HAW-EB4 5906674 YP_001673850.1 CDS Shal_1625 NC_010334.1 1950756 1951001 R KEGG: slo:Shew_1493 hypothetical protein; hypothetical protein complement(1950756..1951001) Shewanella halifaxensis HAW-EB4 5906675 YP_001673851.1 CDS Shal_1626 NC_010334.1 1951258 1951572 D PFAM: protein of unknown function DUF437; KEGG: vvy:VVA0554 hypothetical protein; hypothetical protein 1951258..1951572 Shewanella halifaxensis HAW-EB4 5906832 YP_001673852.1 CDS Shal_1627 NC_010334.1 1951741 1952400 D PFAM: regulatory protein TetR; KEGG: vfi:VF0296 hypothetical protein; TetR family transcriptional regulator 1951741..1952400 Shewanella halifaxensis HAW-EB4 5905854 YP_001673853.1 CDS Shal_1628 NC_010334.1 1952400 1953743 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vha:VIBHAR_06540 hypothetical protein; RND family efflux transporter MFP subunit 1952400..1953743 Shewanella halifaxensis HAW-EB4 5905855 YP_001673854.1 CDS Shal_1629 NC_010334.1 1953740 1956856 D PFAM: acriflavin resistance protein; KEGG: vha:VIBHAR_06541 hypothetical protein; acriflavin resistance protein 1953740..1956856 Shewanella halifaxensis HAW-EB4 5906331 YP_001673855.1 CDS Shal_1630 NC_010334.1 1957121 1957510 D hypothetical protein 1957121..1957510 Shewanella halifaxensis HAW-EB4 5906332 YP_001673856.1 CDS Shal_1631 NC_010334.1 1957728 1958657 R KEGG: bba:Bd2856 hypothetical protein; hypothetical protein complement(1957728..1958657) Shewanella halifaxensis HAW-EB4 5906815 YP_001673857.1 CDS Shal_1632 NC_010334.1 1958860 1959645 R PFAM: purine or other phosphorylase family 1; KEGG: vpa:VPA1089 putative 5'-methylthioadenosine/S-adenosylhomocy steine nuclosidase; purine phosphorylase family 1 complement(1958860..1959645) Shewanella halifaxensis HAW-EB4 5906816 YP_001673858.1 CDS Shal_1633 NC_010334.1 1959977 1960939 R PFAM: Integral membrane protein TerC; KEGG: ppr:PBPRA2002 hypothetical transmembrane transportprotein; integral membrane protein TerC complement(1959977..1960939) Shewanella halifaxensis HAW-EB4 5906069 YP_001673859.1 CDS Shal_1634 NC_010334.1 1962081 1963043 R TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: sbm:Shew185_1682 integron integrase; integron integrase complement(1962081..1963043) Shewanella halifaxensis HAW-EB4 5906070 YP_001673860.1 CDS Shal_1635 NC_010334.1 1963366 1964715 D hypothetical protein 1963366..1964715 Shewanella halifaxensis HAW-EB4 5905766 YP_001673861.1 CDS Shal_1636 NC_010334.1 1964868 1965596 D KEGG: asa:ASA_3857 hypothetical protein; hypothetical protein 1964868..1965596 Shewanella halifaxensis HAW-EB4 5905767 YP_001673862.1 CDS Shal_1637 NC_010334.1 1965996 1966799 D KEGG: ppr:PBPRA1434 hypothetical Ap4A phosphorylase II; Ap4A phosphorylase II 1965996..1966799 Shewanella halifaxensis HAW-EB4 5904415 YP_001673863.1 CDS Shal_1638 NC_010334.1 1966988 1967530 R KEGG: slo:Shew_1496 lipoprotein, putative; hypothetical protein complement(1966988..1967530) Shewanella halifaxensis HAW-EB4 5904416 YP_001673864.1 CDS Shal_1639 NC_010334.1 1967776 1968207 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: shw:Sputw3181_0824 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(1967776..1968207) Shewanella halifaxensis HAW-EB4 5905847 YP_001673865.1 CDS Shal_1640 NC_010334.1 1968534 1968977 R PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein complement(1968534..1968977) Shewanella halifaxensis HAW-EB4 5905748 YP_001673866.1 CDS Shal_1641 NC_010334.1 1969558 1970820 D PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1969558..1970820 Shewanella halifaxensis HAW-EB4 5905749 YP_001673867.1 CDS Shal_1642 NC_010334.1 1970956 1971732 R PFAM: band 7 protein; KEGG: slo:Shew_1785 band 7 protein; hypothetical protein complement(1970956..1971732) Shewanella halifaxensis HAW-EB4 5905756 YP_001673868.1 CDS Shal_1643 NC_010334.1 1971751 1973262 R PFAM: protein of unknown function DUF107; KEGG: sdn:Sden_2190 protein of unknown function DUF107; hypothetical protein complement(1971751..1973262) Shewanella halifaxensis HAW-EB4 5905757 YP_001673869.1 CDS Shal_1644 NC_010334.1 1973849 1975210 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1973849..1975210 Shewanella halifaxensis HAW-EB4 5904304 YP_001673870.1 CDS Shal_1645 NC_010334.1 1975210 1976424 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1975210..1976424 Shewanella halifaxensis HAW-EB4 5904305 YP_001673871.1 CDS Shal_1646 NC_010334.1 1976568 1977338 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1976568..1977338 Shewanella halifaxensis HAW-EB4 5905296 YP_001673872.1 CDS Shal_1647 NC_010334.1 1977342 1977965 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1977342..1977965 Shewanella halifaxensis HAW-EB4 5905297 YP_001673873.1 CDS Shal_1648 NC_010334.1 1977974 1978582 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1977974..1978582 Shewanella halifaxensis HAW-EB4 5903440 YP_001673874.1 CDS Shal_1649 NC_010334.1 1978641 1979858 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1978641..1979858 Shewanella halifaxensis HAW-EB4 5903441 YP_001673875.1 CDS Shal_1650 NC_010334.1 1979931 1980011 D hypothetical protein 1979931..1980011 Shewanella halifaxensis HAW-EB4 5905371 YP_001673876.1 CDS Shal_1651 NC_010334.1 1980620 1980928 D KEGG: saz:Sama_3567 hypothetical protein; hypothetical protein 1980620..1980928 Shewanella halifaxensis HAW-EB4 5905372 YP_001673877.1 CDS Shal_1652 NC_010334.1 1981125 1982930 D PFAM: Arylsulfotransferase; KEGG: ecv:APECO1_3375 arylsulfate sulfotransferase; arylsulfotransferase 1981125..1982930 Shewanella halifaxensis HAW-EB4 5905293 YP_001673878.1 CDS trpA NC_010334.1 1983021 1983830 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1983021..1983830) Shewanella halifaxensis HAW-EB4 5905305 YP_001673879.1 CDS Shal_1654 NC_010334.1 1983823 1985082 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1983823..1985082) Shewanella halifaxensis HAW-EB4 5905306 YP_001673880.1 CDS Shal_1655 NC_010334.1 1985187 1986626 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1985187..1986626) Shewanella halifaxensis HAW-EB4 5905264 YP_001673881.1 CDS trpD NC_010334.1 1986628 1987704 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1986628..1987704) Shewanella halifaxensis HAW-EB4 5905265 YP_001673882.1 CDS Shal_1657 NC_010334.1 1987706 1988320 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1987706..1988320) Shewanella halifaxensis HAW-EB4 5905078 YP_001673883.1 CDS Shal_1658 NC_010334.1 1988317 1989909 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1988317..1989909) Shewanella halifaxensis HAW-EB4 5905079 YP_001673884.1 CDS Shal_1659 NC_010334.1 1990607 1991341 D PFAM: protein of unknown function DUF1538; KEGG: slo:Shew_1497 protein of unknown function DUF1538; hypothetical protein 1990607..1991341 Shewanella halifaxensis HAW-EB4 5904950 YP_001673885.1 CDS Shal_1660 NC_010334.1 1991398 1992183 D PFAM: protein of unknown function DUF1538; KEGG: slo:Shew_1498 protein of unknown function DUF1538; hypothetical protein 1991398..1992183 Shewanella halifaxensis HAW-EB4 5904951 YP_001673886.1 CDS Shal_1661 NC_010334.1 1992173 1992523 D KEGG: sfr:Sfri_2273 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II 1992173..1992523 Shewanella halifaxensis HAW-EB4 5904809 YP_001673887.1 CDS Shal_1662 NC_010334.1 1992520 1992927 D PFAM: CBS domain containing protein; KEGG: slo:Shew_1500 putative signal transduction protein with CBS domains; signal-transduction protein 1992520..1992927 Shewanella halifaxensis HAW-EB4 5904810 YP_001673888.1 CDS Shal_1663 NC_010334.1 1993092 1993901 D PFAM: regulatory protein RecX; KEGG: sfr:Sfri_0228 regulatory protein RecX; regulatory protein RecX 1993092..1993901 Shewanella halifaxensis HAW-EB4 5902622 YP_001673889.1 CDS Shal_1664 NC_010334.1 1993934 1994518 R hypothetical protein complement(1993934..1994518) Shewanella halifaxensis HAW-EB4 5902623 YP_001673890.1 CDS Shal_1665 NC_010334.1 1994903 1995454 D PFAM: PEBP family protein; KEGG: rpa:RPA0709 hypothetical protein; PEBP family protein 1994903..1995454 Shewanella halifaxensis HAW-EB4 5902675 YP_001673891.1 CDS Shal_1666 NC_010334.1 1995552 1995908 R KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin complement(1995552..1995908) Shewanella halifaxensis HAW-EB4 5902867 YP_001673892.1 CDS Shal_1667 NC_010334.1 1995997 1996641 R PFAM: peptidase S51 dipeptidase E; KEGG: slo:Shew_1665 peptidase S51, dipeptidase E; peptidase S51 dipeptidase E complement(1995997..1996641) Shewanella halifaxensis HAW-EB4 5902868 YP_001673893.1 CDS Shal_1668 NC_010334.1 1996837 1999950 R PFAM: protein of unknown function DUF748; KEGG: slo:Shew_1502 protein of unknown function DUF748; hypothetical protein complement(1996837..1999950) Shewanella halifaxensis HAW-EB4 5903059 YP_001673894.1 CDS Shal_1669 NC_010334.1 2000122 2001132 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: slo:Shew_1503 oxidoreductase FAD-binding domain protein; ferredoxin 2000122..2001132 Shewanella halifaxensis HAW-EB4 5903060 YP_001673895.1 CDS Shal_1670 NC_010334.1 2001259 2001966 D KEGG: slo:Shew_1505 hypothetical protein; hypothetical protein 2001259..2001966 Shewanella halifaxensis HAW-EB4 5902935 YP_001673896.1 CDS Shal_1671 NC_010334.1 2002127 2002477 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_1598 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2002127..2002477 Shewanella halifaxensis HAW-EB4 5902936 YP_001673897.1 CDS Shal_1672 NC_010334.1 2002518 2002862 D KEGG: slo:Shew_1507 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 2002518..2002862 Shewanella halifaxensis HAW-EB4 5902899 YP_001673898.1 CDS asnB NC_010334.1 2002997 2004661 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(2002997..2004661) Shewanella halifaxensis HAW-EB4 5902900 YP_001673899.1 CDS Shal_1674 NC_010334.1 2005202 2006860 R PFAM: peptidase M28; KEGG: shn:Shewana3_2548 peptidase M28; peptidase M28 complement(2005202..2006860) Shewanella halifaxensis HAW-EB4 5902829 YP_001673900.1 CDS Shal_1675 NC_010334.1 2007153 2007899 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saz:Sama_2099 NagD protein; UMP phosphatase complement(2007153..2007899) Shewanella halifaxensis HAW-EB4 5902830 YP_001673901.1 CDS Shal_1676 NC_010334.1 2008400 2010241 D KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 2008400..2010241 Shewanella halifaxensis HAW-EB4 5902740 YP_001673902.1 CDS Shal_1677 NC_010334.1 2010377 2011915 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vha:VIBHAR_02425 hypothetical protein; hypothetical protein 2010377..2011915 Shewanella halifaxensis HAW-EB4 5902741 YP_001673903.1 CDS Shal_1678 NC_010334.1 2012131 2013225 R PFAM: TrkA-N domain protein; Ion transport protein; Ion transport 2 domain protein; KEGG: sdy:SDY_1308 putative potassium channel protein; voltage-gated potassium channel complement(2012131..2013225) Shewanella halifaxensis HAW-EB4 5903015 YP_001673904.1 CDS purN NC_010334.1 2014017 2014661 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(2014017..2014661) Shewanella halifaxensis HAW-EB4 5902612 YP_001673905.1 CDS Shal_1680 NC_010334.1 2014661 2015701 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2014661..2015701) Shewanella halifaxensis HAW-EB4 5902613 YP_001673906.1 CDS upp NC_010334.1 2015923 2016549 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2015923..2016549 Shewanella halifaxensis HAW-EB4 5902879 YP_001673907.1 CDS Shal_1682 NC_010334.1 2016661 2017980 R PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; KEGG: slo:Shew_1515 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(2016661..2017980) Shewanella halifaxensis HAW-EB4 5902880 YP_001673908.1 CDS Shal_1683 NC_010334.1 2018292 2018897 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_1516 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2018292..2018897 Shewanella halifaxensis HAW-EB4 5902871 YP_001673909.1 CDS Shal_1684 NC_010334.1 2019116 2019811 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(2019116..2019811) Shewanella halifaxensis HAW-EB4 5902872 YP_001673910.1 CDS Shal_1685 NC_010334.1 2019952 2020821 D PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_1521 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2019952..2020821 Shewanella halifaxensis HAW-EB4 5903051 YP_001673911.1 CDS Shal_1686 NC_010334.1 2021471 2023627 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: slo:Shew_1522 prolyl oligopeptidase; prolyl oligopeptidase 2021471..2023627 Shewanella halifaxensis HAW-EB4 5903052 YP_001673912.1 CDS Shal_1687 NC_010334.1 2023861 2024259 D TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_2535 4-hydroxybenzoyl-CoA thioesterase; Pol-Pal system-associated acyl-CoA thioesterase 2023861..2024259 Shewanella halifaxensis HAW-EB4 5902840 YP_001673913.1 CDS Shal_1688 NC_010334.1 2024249 2024938 D TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_1524 MotA/TolQ/ExbB proton channel; Tol-Pal system protein TolQ 2024249..2024938 Shewanella halifaxensis HAW-EB4 5902841 YP_001673914.1 CDS Shal_1689 NC_010334.1 2024938 2025375 D TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_1525 biopolymer transport protein ExbD/TolR; biopolymer transport TolR 2024938..2025375 Shewanella halifaxensis HAW-EB4 5902642 YP_001673915.1 CDS Shal_1690 NC_010334.1 2025376 2026311 D TIGRFAM: Tol-Pal system TolA; PFAM: TolA family protein; KEGG: slo:Shew_1526 TolA family protein; Tol-Pal system TolA 2025376..2026311 Shewanella halifaxensis HAW-EB4 5902643 YP_001673916.1 CDS tolB NC_010334.1 2026321 2027643 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2026321..2027643 Shewanella halifaxensis HAW-EB4 5902668 YP_001673917.1 CDS Shal_1692 NC_010334.1 2027668 2028207 D TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_1528 OmpA domain protein; peptidoglycan-associated lipoprotein 2027668..2028207 Shewanella halifaxensis HAW-EB4 5903458 YP_001673918.1 CDS Shal_1693 NC_010334.1 2028232 2028957 D TIGRFAM: Tol-Pal system YbgF; KEGG: slo:Shew_1529 tetratricopeptide TPR_2 repeat protein; Tol-Pal system protein YbgF 2028232..2028957 Shewanella halifaxensis HAW-EB4 5903459 YP_001673919.1 CDS Shal_1694 NC_010334.1 2031280 2032440 D PFAM: porin; KEGG: slo:Shew_1530 porin; porin 2031280..2032440 Shewanella halifaxensis HAW-EB4 5903179 YP_001673920.1 CDS grxA NC_010334.1 2032505 2032771 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(2032505..2032771) Shewanella halifaxensis HAW-EB4 5902813 YP_001673921.1 CDS Shal_1696 NC_010334.1 2032868 2034610 R PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shn:Shewana3_2524 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(2032868..2034610) Shewanella halifaxensis HAW-EB4 5902814 YP_001673922.1 CDS Shal_1697 NC_010334.1 2034792 2036744 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(2034792..2036744) Shewanella halifaxensis HAW-EB4 5903133 YP_001673923.1 CDS Shal_1698 NC_010334.1 2036919 2040347 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase; PAS/PAC sensor-containing hybrid histidine kinase 2036919..2040347 Shewanella halifaxensis HAW-EB4 5903134 YP_001673924.1 CDS Shal_1699 NC_010334.1 2040501 2040833 R KEGG: sfr:Sfri_1438 hypothetical protein; hypothetical protein complement(2040501..2040833) Shewanella halifaxensis HAW-EB4 5903173 YP_001673925.1 CDS Shal_1700 NC_010334.1 2041164 2042453 D PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_1537 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2041164..2042453 Shewanella halifaxensis HAW-EB4 5903174 YP_001673926.1 CDS Shal_1701 NC_010334.1 2042574 2043233 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1545 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2042574..2043233) Shewanella halifaxensis HAW-EB4 5902981 YP_001673927.1 CDS Shal_1702 NC_010334.1 2043462 2043884 R PFAM: thioesterase superfamily protein; KEGG: saz:Sama_2075 thioesterase superfamily; thioesterase superfamily protein complement(2043462..2043884) Shewanella halifaxensis HAW-EB4 5902982 YP_001673928.1 CDS Shal_1703 NC_010334.1 2044154 2045215 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2044154..2045215) Shewanella halifaxensis HAW-EB4 5902646 YP_001673929.1 CDS Shal_1704 NC_010334.1 2045405 2046217 R PFAM: protein of unknown function DUF299; KEGG: son:SO_2645 hypothetical protein; hypothetical protein complement(2045405..2046217) Shewanella halifaxensis HAW-EB4 5902993 YP_001673930.1 CDS Shal_1705 NC_010334.1 2046344 2048713 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2046344..2048713 Shewanella halifaxensis HAW-EB4 5902994 YP_001673931.1 CDS Shal_1706 NC_010334.1 2048865 2051915 D PFAM: FAD linked oxidase domain protein; KEGG: slo:Shew_1550 FAD linked oxidase domain protein; D-lactate dehydrogenase 2048865..2051915 Shewanella halifaxensis HAW-EB4 5903011 YP_001673932.1 CDS Shal_1707 NC_010334.1 2052072 2052515 D KEGG: she:Shewmr4_1594 protein of unknown function DUF1285; hypothetical protein 2052072..2052515 Shewanella halifaxensis HAW-EB4 5903012 YP_001673933.1 CDS Shal_1708 NC_010334.1 2052671 2053084 D PFAM: regulatory protein MarR; KEGG: shm:Shewmr7_1670 transcriptional regulator, MarR family; MarR family transcriptional regulator 2052671..2053084 Shewanella halifaxensis HAW-EB4 5902764 YP_001673934.1 CDS Shal_1709 NC_010334.1 2053448 2053858 D KEGG: slo:Shew_1553 hypothetical protein; hypothetical protein 2053448..2053858 Shewanella halifaxensis HAW-EB4 5902765 YP_001673935.1 CDS Shal_1710 NC_010334.1 2053918 2054262 R KEGG: shw:Sputw3181_1770 hypothetical protein; hypothetical protein complement(2053918..2054262) Shewanella halifaxensis HAW-EB4 5902659 YP_001673936.1 CDS Shal_1711 NC_010334.1 2054437 2055468 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: slo:Shew_1555 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase complement(2054437..2055468) Shewanella halifaxensis HAW-EB4 5902660 YP_001673937.1 CDS Shal_1712 NC_010334.1 2055733 2056158 D KEGG: sfr:Sfri_2264 hypothetical protein; hypothetical protein 2055733..2056158 Shewanella halifaxensis HAW-EB4 5903147 YP_001673938.1 CDS Shal_1713 NC_010334.1 2056349 2057719 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2056349..2057719) Shewanella halifaxensis HAW-EB4 5903148 YP_001673939.1 CDS Shal_1714 NC_010334.1 2057751 2058368 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2057751..2058368) Shewanella halifaxensis HAW-EB4 5902595 YP_001673940.1 CDS mnmA NC_010334.1 2058372 2059487 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2058372..2059487) Shewanella halifaxensis HAW-EB4 5902596 YP_001673941.1 CDS Shal_1716 NC_010334.1 2059767 2060219 R PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2259 NUDIX hydrolase; NUDIX hydrolase complement(2059767..2060219) Shewanella halifaxensis HAW-EB4 5903094 YP_001673942.1 CDS Shal_1717 NC_010334.1 2060242 2060961 R PFAM: pseudouridine synthase; KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridine synthase complement(2060242..2060961) Shewanella halifaxensis HAW-EB4 5902620 YP_001673943.1 CDS Shal_1718 NC_010334.1 2061266 2063488 D KEGG: sfr:Sfri_2257 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 2061266..2063488 Shewanella halifaxensis HAW-EB4 5902621 YP_001673944.1 CDS Shal_1719 NC_010334.1 2063686 2063892 R KEGG: sbm:Shew185_2467 putative cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(2063686..2063892) Shewanella halifaxensis HAW-EB4 5902602 YP_001673945.1 CDS clpS NC_010334.1 2064132 2064440 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2064132..2064440 Shewanella halifaxensis HAW-EB4 5902603 YP_001673946.1 CDS Shal_1721 NC_010334.1 2064478 2066736 D KEGG: slo:Shew_1566 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2064478..2066736 Shewanella halifaxensis HAW-EB4 5903002 YP_001673947.1 CDS infA NC_010334.1 2066880 2067098 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2066880..2067098) Shewanella halifaxensis HAW-EB4 5903003 YP_001673948.1 CDS Shal_1723 NC_010334.1 2067218 2067937 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2067218..2067937) Shewanella halifaxensis HAW-EB4 5903097 YP_001673949.1 CDS aat NC_010334.1 2067927 2068637 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2067927..2068637) Shewanella halifaxensis HAW-EB4 5903098 YP_001673950.1 CDS Shal_1725 NC_010334.1 2068692 2069168 D PFAM: 17 kDa surface antigen; KEGG: son:SO_2622 hypothetical protein; 17 kDa surface antigen 2068692..2069168 Shewanella halifaxensis HAW-EB4 5902901 YP_001673951.1 CDS Shal_1726 NC_010334.1 2069334 2070695 R PFAM: regulatory protein GntR HTH; KEGG: sbl:Sbal_2383 putative transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2069334..2070695) Shewanella halifaxensis HAW-EB4 5902902 YP_001673952.1 CDS Shal_1727 NC_010334.1 2070857 2071462 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shw:Sputw3181_1878 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2070857..2071462 Shewanella halifaxensis HAW-EB4 5903079 YP_001673953.1 CDS Shal_1728 NC_010334.1 2071553 2072245 R PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_1780 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(2071553..2072245) Shewanella halifaxensis HAW-EB4 5903080 YP_001673954.1 CDS Shal_1729 NC_010334.1 2072585 2073949 D KEGG: slo:Shew_1787 hypothetical protein; putative chaperone 2072585..2073949 Shewanella halifaxensis HAW-EB4 5902873 YP_001673955.1 CDS Shal_1730 NC_010334.1 2074089 2074583 D PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein 2074089..2074583 Shewanella halifaxensis HAW-EB4 5902882 YP_001673956.1 CDS Shal_1731 NC_010334.1 2074861 2075433 R KEGG: vha:VIBHAR_01338 hypothetical protein; hypothetical protein complement(2074861..2075433) Shewanella halifaxensis HAW-EB4 5902883 YP_001673957.1 CDS Shal_1732 NC_010334.1 2075634 2076854 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(2075634..2076854) Shewanella halifaxensis HAW-EB4 5903175 YP_001673958.1 CDS Shal_1733 NC_010334.1 2076947 2079130 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1790 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2076947..2079130) Shewanella halifaxensis HAW-EB4 5903176 YP_001673959.1 CDS Shal_1734 NC_010334.1 2079300 2079992 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_1791 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2079300..2079992) Shewanella halifaxensis HAW-EB4 5902929 YP_001673960.1 CDS Shal_1735 NC_010334.1 2080249 2080986 D PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_1624 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2080249..2080986 Shewanella halifaxensis HAW-EB4 5902930 YP_001673961.1 CDS Shal_1736 NC_010334.1 2081112 2083664 D KEGG: sbl:Sbal_1843 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; cell wall anchor domain-containing protein 2081112..2083664 Shewanella halifaxensis HAW-EB4 5902770 YP_001673962.1 CDS Shal_1737 NC_010334.1 2083657 2084331 D PFAM: peptidase C60 sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; peptidase C60 sortase A and B 2083657..2084331 Shewanella halifaxensis HAW-EB4 5902771 YP_001673963.1 CDS Shal_1738 NC_010334.1 2084447 2085472 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbm:Shew185_1831 diguanylate cyclase; diguanylate cyclase complement(2084447..2085472) Shewanella halifaxensis HAW-EB4 5903162 YP_001673964.1 CDS Shal_1739 NC_010334.1 2085801 2086673 R KEGG: slo:Shew_1585 hypothetical protein; hypothetical protein complement(2085801..2086673) Shewanella halifaxensis HAW-EB4 5903163 YP_001673965.1 CDS Shal_1740 NC_010334.1 2087135 2087506 R PFAM: diacylglycerol kinase; KEGG: sbm:Shew185_1837 diacylglycerol kinase; diacylglycerol kinase complement(2087135..2087506) Shewanella halifaxensis HAW-EB4 5902823 YP_001673966.1 CDS Shal_1741 NC_010334.1 2087765 2088652 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2087765..2088652 Shewanella halifaxensis HAW-EB4 5902824 YP_001673967.1 CDS Shal_1742 NC_010334.1 2088845 2089501 R PFAM: nitroreductase; KEGG: sfr:Sfri_1409 nitroreductase; nitroreductase complement(2088845..2089501) Shewanella halifaxensis HAW-EB4 5904301 YP_001673968.1 CDS Shal_1743 NC_010334.1 2089727 2090029 D KEGG: pha:PSHAa2104 hypothetical protein; hypothetical protein 2089727..2090029 Shewanella halifaxensis HAW-EB4 5903206 YP_001673969.1 CDS Shal_1744 NC_010334.1 2090990 2096740 D KEGG: shm:Shewmr7_3695 hypothetical protein; hypothetical protein 2090990..2096740 Shewanella halifaxensis HAW-EB4 5903207 YP_001673970.1 CDS Shal_1745 NC_010334.1 2096703 2097200 D KEGG: pat:Patl_1737 hypothetical protein; hypothetical protein 2096703..2097200 Shewanella halifaxensis HAW-EB4 5903192 YP_001673971.1 CDS Shal_1746 NC_010334.1 2097483 2097875 R hypothetical protein complement(2097483..2097875) Shewanella halifaxensis HAW-EB4 5903193 YP_001673972.1 CDS Shal_1747 NC_010334.1 2098102 2098434 D hypothetical protein 2098102..2098434 Shewanella halifaxensis HAW-EB4 5904603 YP_001673973.1 CDS Shal_1748 NC_010334.1 2098508 2098861 D KEGG: asu:Asuc_0026 putative lipoprotein; putative lipoprotein 2098508..2098861 Shewanella halifaxensis HAW-EB4 5904604 YP_001673974.1 CDS Shal_1749 NC_010334.1 2099025 2099510 D hypothetical protein 2099025..2099510 Shewanella halifaxensis HAW-EB4 5902907 YP_001673975.1 CDS Shal_1750 NC_010334.1 2099743 2100126 D hypothetical protein 2099743..2100126 Shewanella halifaxensis HAW-EB4 5902908 YP_001673976.1 CDS Shal_1751 NC_010334.1 2100197 2100478 D KEGG: mes:Meso_4612 hypothetical protein; hypothetical protein 2100197..2100478 Shewanella halifaxensis HAW-EB4 5902719 YP_001673977.1 CDS Shal_1752 NC_010334.1 2100547 2101638 D KEGG: pin:Ping_2153 kinase; kinase 2100547..2101638 Shewanella halifaxensis HAW-EB4 5902720 YP_001673978.1 CDS Shal_1753 NC_010334.1 2101631 2103247 D PFAM: GTP-binding protein HSR1-related; KEGG: pin:Ping_2152 GTP-binding protein, HSR1-related; GTP-binding protein HSR1-like 2101631..2103247 Shewanella halifaxensis HAW-EB4 5902986 YP_001673979.1 CDS Shal_1754 NC_010334.1 2103282 2104451 D PFAM: Ankyrin; KEGG: spu:752165 similar to ankyrin 2,3/unc44; ankyrin 2103282..2104451 Shewanella halifaxensis HAW-EB4 5902987 YP_001673980.1 CDS Shal_1755 NC_010334.1 2104454 2105092 D KEGG: pin:Ping_2688 hypothetical protein; hypothetical protein 2104454..2105092 Shewanella halifaxensis HAW-EB4 5903161 YP_001673981.1 CDS Shal_1756 NC_010334.1 2105103 2107127 D KEGG: cpf:CPF_0359 hypothetical protein; hypothetical protein 2105103..2107127 Shewanella halifaxensis HAW-EB4 5903041 YP_001673982.1 CDS Shal_1757 NC_010334.1 2107557 2108426 R hypothetical protein complement(2107557..2108426) Shewanella halifaxensis HAW-EB4 5903042 YP_001673983.1 CDS Shal_1758 NC_010334.1 2108732 2108953 R KEGG: sbm:Shew185_1989 hypothetical protein; hypothetical protein complement(2108732..2108953) Shewanella halifaxensis HAW-EB4 5902748 YP_001673984.1 CDS Shal_1760 NC_010334.1 2109530 2109820 R hypothetical protein complement(2109530..2109820) Shewanella halifaxensis HAW-EB4 5902606 YP_001673985.1 CDS Shal_1761 NC_010334.1 2110054 2110515 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: shm:Shewmr7_2266 protein tyrosine phosphatase; protein tyrosine phosphatase 2110054..2110515 Shewanella halifaxensis HAW-EB4 5902607 YP_001673986.1 CDS Shal_1762 NC_010334.1 2110636 2112006 D TIGRFAM: GTP1/OBG protein; PFAM: GTP-binding protein HSR1-related; KEGG: saz:Sama_0751 GTP-binding protein HflX; GTP1/OBG protein 2110636..2112006 Shewanella halifaxensis HAW-EB4 5902846 YP_001673987.1 CDS rbgA NC_010334.1 2112068 2113006 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(2112068..2113006) Shewanella halifaxensis HAW-EB4 5902847 YP_001673988.1 CDS Shal_1764 NC_010334.1 2113124 2113963 R PFAM: 2OG-Fe(II) oxygenase; KEGG: slo:Shew_1590 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(2113124..2113963) Shewanella halifaxensis HAW-EB4 5902801 YP_001673989.1 CDS Shal_1765 NC_010334.1 2114372 2115304 D this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2114372..2115304 Shewanella halifaxensis HAW-EB4 5902802 YP_001673990.1 CDS Shal_1766 NC_010334.1 2115389 2116948 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_1592 sulphate transporter; sulfate transporter complement(2115389..2116948) Shewanella halifaxensis HAW-EB4 5902705 YP_001673991.1 CDS Shal_1767 NC_010334.1 2117079 2120378 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: slo:Shew_1593 ribonuclease, Rne/Rng family; ribonuclease complement(2117079..2120378) Shewanella halifaxensis HAW-EB4 5902706 YP_001673992.1 CDS Shal_1768 NC_010334.1 2120948 2121907 D KEGG: slo:Shew_1594 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2120948..2121907 Shewanella halifaxensis HAW-EB4 5902938 YP_001673993.1 CDS Shal_1769 NC_010334.1 2121904 2122551 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: slo:Shew_1595 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 2121904..2122551 Shewanella halifaxensis HAW-EB4 5902848 YP_001673994.1 CDS Shal_1770 NC_010334.1 2122585 2122833 R hypothetical protein complement(2122585..2122833) Shewanella halifaxensis HAW-EB4 5902849 YP_001673995.1 CDS Shal_1771 NC_010334.1 2123301 2123882 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: she:Shewmr4_2402 maf protein; maf protein complement(2123301..2123882) Shewanella halifaxensis HAW-EB4 5903232 YP_001673996.1 CDS Shal_1772 NC_010334.1 2124857 2125381 D PFAM: protein of unknown function DUF177; KEGG: son:SO_2781 hypothetical protein; hypothetical protein 2124857..2125381 Shewanella halifaxensis HAW-EB4 5903233 YP_001673997.1 CDS rpmF NC_010334.1 2125399 2125569 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2125399..2125569 Shewanella halifaxensis HAW-EB4 5903125 YP_001673998.1 CDS Shal_1774 NC_010334.1 2125585 2126613 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 2125585..2126613 Shewanella halifaxensis HAW-EB4 5903126 YP_001673999.1 CDS Shal_1775 NC_010334.1 2126624 2127583 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2126624..2127583 Shewanella halifaxensis HAW-EB4 5902744 YP_001674000.1 CDS Shal_1776 NC_010334.1 2127670 2128596 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: son:SO_2777 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2127670..2128596 Shewanella halifaxensis HAW-EB4 5902745 YP_001674001.1 CDS Shal_1777 NC_010334.1 2128606 2129352 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shw:Sputw3181_2440 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2128606..2129352 Shewanella halifaxensis HAW-EB4 5902805 YP_001674002.1 CDS acpP NC_010334.1 2129509 2129742 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2129509..2129742 Shewanella halifaxensis HAW-EB4 5902806 YP_001674003.1 CDS Shal_1779 NC_010334.1 2129985 2131223 D PFAM: Beta-ketoacyl synthase; KEGG: shm:Shewmr7_2464 beta-ketoacyl synthase; beta-ketoacyl synthase 2129985..2131223 Shewanella halifaxensis HAW-EB4 5903063 YP_001674004.1 CDS Shal_1780 NC_010334.1 2131505 2131873 D KEGG: shm:Shewmr7_2463 hypothetical protein; hypothetical protein 2131505..2131873 Shewanella halifaxensis HAW-EB4 5903064 YP_001674005.1 CDS Shal_1781 NC_010334.1 2131939 2132430 D PFAM: thioesterase superfamily protein; KEGG: son:SO_2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 2131939..2132430 Shewanella halifaxensis HAW-EB4 5902876 YP_001674006.1 CDS Shal_1782 NC_010334.1 2132568 2133443 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: slo:Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2132568..2133443 Shewanella halifaxensis HAW-EB4 5903049 YP_001674007.1 CDS Shal_1783 NC_010334.1 2133527 2134417 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(2133527..2134417) Shewanella halifaxensis HAW-EB4 5903050 YP_001674008.1 CDS sbcB NC_010334.1 2134513 2135994 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(2134513..2135994) Shewanella halifaxensis HAW-EB4 5902630 YP_001674009.1 CDS Shal_1785 NC_010334.1 2136220 2137296 D PFAM: integrase family protein; KEGG: shw:Sputw3181_2529 phage integrase family protein; integrase family protein 2136220..2137296 Shewanella halifaxensis HAW-EB4 5902631 YP_001674010.1 CDS Shal_1786 NC_010334.1 2137326 2138135 D hypothetical protein 2137326..2138135 Shewanella halifaxensis HAW-EB4 5902931 YP_001674011.1 CDS Shal_1787 NC_010334.1 2138530 2138886 R KEGG: pol:Bpro_1735 hypothetical protein; hypothetical protein complement(2138530..2138886) Shewanella halifaxensis HAW-EB4 5902932 YP_001674012.1 CDS Shal_1788 NC_010334.1 2138837 2139706 R KEGG: pfl:PFL_3846 hypothetical protein; restriction endonuclease-like protein complement(2138837..2139706) Shewanella halifaxensis HAW-EB4 5902893 YP_001674013.1 CDS Shal_1789 NC_010334.1 2140046 2141083 D KEGG: pau:PA14_53590 hypothetical protein; hypothetical protein 2140046..2141083 Shewanella halifaxensis HAW-EB4 5902894 YP_001674014.1 CDS Shal_1790 NC_010334.1 2141818 2142375 R PFAM: Resolvase domain; KEGG: ppd:Ppro_2582 resolvase, N-terminal domain; resolvase domain-containing protein complement(2141818..2142375) Shewanella halifaxensis HAW-EB4 5903017 YP_001674015.1 CDS Shal_1791 NC_010334.1 2142667 2143704 D KEGG: shn:Shewana3_4355 hypothetical protein; hypothetical protein 2142667..2143704 Shewanella halifaxensis HAW-EB4 5903018 YP_001674016.1 CDS Shal_1792 NC_010334.1 2143701 2145425 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: shn:Shewana3_4354 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 2143701..2145425 Shewanella halifaxensis HAW-EB4 5902833 YP_001674017.1 CDS Shal_1793 NC_010334.1 2145413 2145886 D KEGG: shn:Shewana3_4353 hypothetical protein; hypothetical protein 2145413..2145886 Shewanella halifaxensis HAW-EB4 5902834 YP_001674018.1 CDS Shal_1794 NC_010334.1 2145899 2146969 D KEGG: vvu:VV1_2025 2-methylthioadenine synthetase; hypothetical protein 2145899..2146969 Shewanella halifaxensis HAW-EB4 5902990 YP_001674019.1 CDS Shal_1795 NC_010334.1 2147640 2148377 R hypothetical protein complement(2147640..2148377) Shewanella halifaxensis HAW-EB4 5903109 YP_001674020.1 CDS rrmA NC_010334.1 2149058 2149864 D methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2149058..2149864 Shewanella halifaxensis HAW-EB4 5903110 YP_001674021.1 CDS Shal_1797 NC_010334.1 2150169 2150375 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: slo:Shew_1614 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 2150169..2150375 Shewanella halifaxensis HAW-EB4 5902644 YP_001674022.1 CDS Shal_1798 NC_010334.1 2150982 2151224 R hypothetical protein complement(2150982..2151224) Shewanella halifaxensis HAW-EB4 5902645 YP_001674023.1 CDS Shal_1799 NC_010334.1 2151356 2152255 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_1865 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2151356..2152255) Shewanella halifaxensis HAW-EB4 5902725 YP_001674024.1 CDS Shal_1800 NC_010334.1 2152252 2153061 R KEGG: sfr:Sfri_1695 ABC-2 type transporter; ABC-2 type transporter complement(2152252..2153061) Shewanella halifaxensis HAW-EB4 5902726 YP_001674025.1 CDS Shal_1801 NC_010334.1 2153201 2153848 R PFAM: protein of unknown function DUF480; KEGG: son:SO_1867 hypothetical protein; hypothetical protein complement(2153201..2153848) Shewanella halifaxensis HAW-EB4 5902686 YP_001674026.1 CDS Shal_1802 NC_010334.1 2153968 2154801 R KEGG: slo:Shew_1618 hypothetical protein; hypothetical protein complement(2153968..2154801) Shewanella halifaxensis HAW-EB4 5902687 YP_001674027.1 CDS Shal_1803 NC_010334.1 2155434 2157347 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2155434..2157347 Shewanella halifaxensis HAW-EB4 5902856 YP_001674028.1 CDS Shal_1804 NC_010334.1 2157562 2158482 D PFAM: S-adenosylmethionine decarboxylase; KEGG: spc:Sputcn32_1648 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase 2157562..2158482 Shewanella halifaxensis HAW-EB4 5902857 YP_001674029.1 CDS Shal_1805 NC_010334.1 2158507 2159436 D catalyzes the formation of putrescine from agmatine; agmatinase 2158507..2159436 Shewanella halifaxensis HAW-EB4 5902626 YP_001674030.1 CDS Shal_1806 NC_010334.1 2159583 2160221 D KEGG: sfr:Sfri_1702 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 2159583..2160221 Shewanella halifaxensis HAW-EB4 5902627 YP_001674031.1 CDS Shal_1807 NC_010334.1 2160449 2161036 D PFAM: YceI family protein; KEGG: shm:Shewmr7_1636 YceI family protein; hypothetical protein 2160449..2161036 Shewanella halifaxensis HAW-EB4 5902888 YP_001674032.1 CDS Shal_1808 NC_010334.1 2161281 2161634 D KEGG: slo:Shew_2222 hypothetical protein; hypothetical protein 2161281..2161634 Shewanella halifaxensis HAW-EB4 5903085 YP_001674033.1 CDS Shal_1809 NC_010334.1 2162203 2163078 D PFAM: protein of unknown function DUF785; KEGG: slo:Shew_2219 protein of unknown function DUF785; hypothetical protein 2162203..2163078 Shewanella halifaxensis HAW-EB4 5903086 YP_001674034.1 CDS Shal_1810 NC_010334.1 2163138 2165786 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; KEGG: she:Shewmr4_1565 multi-sensor signal transduction histidine kinase; putative PAS/PAC sensor protein complement(2163138..2165786) Shewanella halifaxensis HAW-EB4 5904256 YP_001674035.1 CDS Shal_1811 NC_010334.1 2166004 2167500 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_2217 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2166004..2167500) Shewanella halifaxensis HAW-EB4 5904257 YP_001674036.1 CDS pheS NC_010334.1 2167940 2168926 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2167940..2168926 Shewanella halifaxensis HAW-EB4 5904263 YP_001674037.1 CDS pheT NC_010334.1 2168943 2171330 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2168943..2171330 Shewanella halifaxensis HAW-EB4 5904264 YP_001674038.1 CDS ihfA NC_010334.1 2171335 2171631 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2171335..2171631 Shewanella halifaxensis HAW-EB4 5904338 YP_001674039.1 CDS Shal_1815 NC_010334.1 2171709 2172647 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2171709..2172647 Shewanella halifaxensis HAW-EB4 5904339 YP_001674040.1 CDS Shal_1816 NC_010334.1 2172758 2173861 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2172758..2173861) Shewanella halifaxensis HAW-EB4 5904392 YP_001674041.1 CDS Shal_1817 NC_010334.1 2174102 2174743 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(2174102..2174743) Shewanella halifaxensis HAW-EB4 5904393 YP_001674042.1 CDS Shal_1818 NC_010334.1 2174795 2175568 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2174795..2175568) Shewanella halifaxensis HAW-EB4 5904615 YP_001674043.1 CDS Shal_1819 NC_010334.1 2175550 2176287 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2175550..2176287) Shewanella halifaxensis HAW-EB4 5904616 YP_001674044.1 CDS hisH NC_010334.1 2176287 2177003 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2176287..2177003) Shewanella halifaxensis HAW-EB4 5904738 YP_001674045.1 CDS Shal_1821 NC_010334.1 2177000 2178079 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(2177000..2178079) Shewanella halifaxensis HAW-EB4 5904805 YP_001674046.1 CDS Shal_1822 NC_010334.1 2178188 2179321 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2178188..2179321) Shewanella halifaxensis HAW-EB4 5904806 YP_001674047.1 CDS hisD NC_010334.1 2179318 2180676 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2179318..2180676) Shewanella halifaxensis HAW-EB4 5904459 YP_001674048.1 CDS hisG NC_010334.1 2180681 2181580 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(2180681..2181580) Shewanella halifaxensis HAW-EB4 5904460 YP_001674049.1 CDS Shal_1825 NC_010334.1 2182232 2184157 D SMART: helicase c2; KEGG: slo:Shew_2196 helicase C2; helicase c2 2182232..2184157 Shewanella halifaxensis HAW-EB4 5904449 YP_001674050.1 CDS Shal_1826 NC_010334.1 2184164 2184589 R hypothetical protein complement(2184164..2184589) Shewanella halifaxensis HAW-EB4 5904450 YP_001674051.1 CDS Shal_1827 NC_010334.1 2185310 2186026 D PFAM: peptidase M22 glycoprotease; KEGG: son:SO_2586 hypothetical protein; peptidase M22 glycoprotease 2185310..2186026 Shewanella halifaxensis HAW-EB4 5904417 YP_001674052.1 CDS Shal_1828 NC_010334.1 2186117 2186449 D KEGG: shw:Sputw3181_2268 hypothetical protein; hypothetical protein 2186117..2186449 Shewanella halifaxensis HAW-EB4 5904418 YP_001674053.1 CDS Shal_1829 NC_010334.1 2186442 2187188 D KEGG: sbm:Shew185_1888 hypothetical protein; hypothetical protein 2186442..2187188 Shewanella halifaxensis HAW-EB4 5904326 YP_001674054.1 CDS Shal_1830 NC_010334.1 2187309 2188142 D KEGG: slo:Shew_2190 hypothetical protein; hypothetical protein 2187309..2188142 Shewanella halifaxensis HAW-EB4 5904327 YP_001674055.1 CDS Shal_1831 NC_010334.1 2188151 2189026 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO_2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 2188151..2189026 Shewanella halifaxensis HAW-EB4 5904094 YP_001674056.1 CDS Shal_1832 NC_010334.1 2189213 2190886 D Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2189213..2190886 Shewanella halifaxensis HAW-EB4 5904095 YP_001674057.1 CDS Shal_1833 NC_010334.1 2190976 2192085 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: she:Shewmr4_2176 ribonuclease D; ribonuclease D 2190976..2192085 Shewanella halifaxensis HAW-EB4 5903429 YP_001674058.1 CDS minE NC_010334.1 2192157 2192417 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2192157..2192417) Shewanella halifaxensis HAW-EB4 5903430 YP_001674059.1 CDS Shal_1835 NC_010334.1 2192421 2193230 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sfr:Sfri_1736 septum site-determining protein MinD; septum site-determining protein MinD complement(2192421..2193230) Shewanella halifaxensis HAW-EB4 5904162 YP_001674060.1 CDS minC NC_010334.1 2193259 2193924 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2193259..2193924) Shewanella halifaxensis HAW-EB4 5904190 YP_001674061.1 CDS Shal_1837 NC_010334.1 2194045 2194326 D PFAM: protein of unknown function DUF709; KEGG: slo:Shew_2183 protein of unknown function DUF709; hypothetical protein 2194045..2194326 Shewanella halifaxensis HAW-EB4 5904191 YP_001674062.1 CDS Shal_1838 NC_010334.1 2194367 2195362 D TIGRFAM: lytic murein transglycosylase; KEGG: sbl:Sbal_1870 lytic murein transglycosylase; lytic murein transglycosylase 2194367..2195362 Shewanella halifaxensis HAW-EB4 5904098 YP_001674063.1 CDS Shal_1839 NC_010334.1 2195559 2195999 D PFAM: protein of unknown function UPF0153; KEGG: sbm:Shew185_1898 protein of unknown function UPF0153; hypothetical protein 2195559..2195999 Shewanella halifaxensis HAW-EB4 5904099 YP_001674064.1 CDS Shal_1840 NC_010334.1 2196097 2196621 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(2196097..2196621) Shewanella halifaxensis HAW-EB4 5904051 YP_001674065.1 CDS nhaB NC_010334.1 2196700 2198286 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(2196700..2198286) Shewanella halifaxensis HAW-EB4 5904052 YP_001674066.1 CDS Shal_1842 NC_010334.1 2198583 2199302 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2198583..2199302 Shewanella halifaxensis HAW-EB4 5903775 YP_001674067.1 CDS Shal_1843 NC_010334.1 2199386 2203393 R PFAM: protein of unknown function DUF490; KEGG: shw:Sputw3181_2112 protein of unknown function DUF490; hypothetical protein complement(2199386..2203393) Shewanella halifaxensis HAW-EB4 5903776 YP_001674068.1 CDS Shal_1844 NC_010334.1 2203390 2205237 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: she:Shewmr4_1836 surface antigen (D15); surface antigen (D15) complement(2203390..2205237) Shewanella halifaxensis HAW-EB4 5904114 YP_001674069.1 CDS Shal_1845 NC_010334.1 2205385 2206458 D PFAM: peptidase T2 asparaginase 2; KEGG: slo:Shew_2171 peptidase T2, asparaginase 2; peptidase T2 asparaginase 2 2205385..2206458 Shewanella halifaxensis HAW-EB4 5904115 YP_001674070.1 CDS Shal_1846 NC_010334.1 2206614 2206973 D KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein 2206614..2206973 Shewanella halifaxensis HAW-EB4 5903968 YP_001674071.1 CDS Shal_1847 NC_010334.1 2207268 2207723 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 2207268..2207723 Shewanella halifaxensis HAW-EB4 5903969 YP_001674072.1 CDS Shal_1848 NC_010334.1 2207905 2208321 D PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein 2207905..2208321 Shewanella halifaxensis HAW-EB4 5903725 YP_001674073.1 CDS Shal_1849 NC_010334.1 2208500 2209681 R PFAM: Choloylglycine hydrolase; KEGG: sdn:Sden_0442 choloylglycine hydrolase; choloylglycine hydrolase complement(2208500..2209681) Shewanella halifaxensis HAW-EB4 5903726 YP_001674074.1 CDS Shal_1850 NC_010334.1 2209861 2210892 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvu:VV2_1000 FOG: GGDEF domain; diguanylate cyclase 2209861..2210892 Shewanella halifaxensis HAW-EB4 5903914 YP_001674075.1 CDS Shal_1851 NC_010334.1 2211358 2215239 D KEGG: slo:Shew_1767 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA 2211358..2215239 Shewanella halifaxensis HAW-EB4 5903915 YP_001674076.1 CDS Shal_1852 NC_010334.1 2215511 2217214 D KEGG: pin:Ping_3169 ABC sugar (glycerol) transporter extracellular solute-binding protein, family 1; sugar ABC transporter extracellular solute-binding family 1 protein 2215511..2217214 Shewanella halifaxensis HAW-EB4 5903800 YP_001674077.1 CDS Shal_1853 NC_010334.1 2217201 2218061 D KEGG: hch:HCH_01467 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; hypothetical protein 2217201..2218061 Shewanella halifaxensis HAW-EB4 5903801 YP_001674078.1 CDS ddl NC_010334.1 2218082 2219083 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(2218082..2219083) Shewanella halifaxensis HAW-EB4 5904737 YP_001674079.1 CDS Shal_1855 NC_010334.1 2219255 2221228 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: slo:Shew_2131 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha complement(2219255..2221228) Shewanella halifaxensis HAW-EB4 5904605 YP_001674080.1 CDS Shal_1856 NC_010334.1 2221225 2224947 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: slo:Shew_2130 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta complement(2221225..2224947) Shewanella halifaxensis HAW-EB4 5904606 YP_001674081.1 CDS Shal_1857 NC_010334.1 2224949 2228722 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: slo:Shew_2129 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma complement(2224949..2228722) Shewanella halifaxensis HAW-EB4 5903256 YP_001674082.1 CDS Shal_1858 NC_010334.1 2228781 2230823 R PFAM: transglutaminase domain protein; KEGG: slo:Shew_2128 transglutaminase domain protein; transglutaminase domain-containing protein complement(2228781..2230823) Shewanella halifaxensis HAW-EB4 5903257 YP_001674083.1 CDS Shal_1859 NC_010334.1 2230820 2231938 R PFAM: protein of unknown function DUF58; KEGG: shn:Shewana3_2243 protein of unknown function DUF58; hypothetical protein complement(2230820..2231938) Shewanella halifaxensis HAW-EB4 5904549 YP_001674084.1 CDS Shal_1860 NC_010334.1 2232071 2232982 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: slo:Shew_2126 ATPase associated with various cellular activities, AAA_3; ATPase complement(2232071..2232982) Shewanella halifaxensis HAW-EB4 5904550 YP_001674085.1 CDS Shal_1861 NC_010334.1 2233068 2233805 R PFAM: EAL domain protein; KEGG: shn:Shewana3_2237 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(2233068..2233805) Shewanella halifaxensis HAW-EB4 5904476 YP_001674086.1 CDS Shal_1862 NC_010334.1 2233961 2235850 R PFAM: Lytic transglycosylase catalytic; KEGG: slo:Shew_2125 lytic transglycosylase, catalytic; lytic transglycosylase complement(2233961..2235850) Shewanella halifaxensis HAW-EB4 5904477 YP_001674087.1 CDS Shal_1863 NC_010334.1 2235970 2237475 R PFAM: protein of unknown function DUF195; KEGG: shm:Shewmr7_1864 protein of unknown function DUF195; hypothetical protein complement(2235970..2237475) Shewanella halifaxensis HAW-EB4 5904361 YP_001674088.1 CDS Shal_1864 NC_010334.1 2237691 2238713 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2237691..2238713 Shewanella halifaxensis HAW-EB4 5904362 YP_001674089.1 CDS Shal_1865 NC_010334.1 2238781 2239434 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2238781..2239434 Shewanella halifaxensis HAW-EB4 5904317 YP_001674090.1 CDS Shal_1866 NC_010334.1 2239813 2240130 R KEGG: sbm:Shew185_2006 hypothetical protein; hypothetical protein complement(2239813..2240130) Shewanella halifaxensis HAW-EB4 5904318 YP_001674091.1 CDS Shal_1867 NC_010334.1 2240313 2240810 D TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: sbm:Shew185_2007 regulator of ribonuclease activity A; ribonuclease activity A regulator 2240313..2240810 Shewanella halifaxensis HAW-EB4 5903451 YP_001674092.1 CDS Shal_1868 NC_010334.1 2240908 2242743 D PFAM: AsmA family protein; KEGG: slo:Shew_2116 AsmA family protein; AsmA family protein 2240908..2242743 Shewanella halifaxensis HAW-EB4 5903452 YP_001674093.1 CDS Shal_1869 NC_010334.1 2242743 2243315 D KEGG: shw:Sputw3181_2251 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein 2242743..2243315 Shewanella halifaxensis HAW-EB4 5903664 YP_001674094.1 CDS Shal_1870 NC_010334.1 2243452 2245011 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: slo:Shew_2115 lytic transglycosylase, catalytic; lytic transglycosylase complement(2243452..2245011) Shewanella halifaxensis HAW-EB4 5903665 YP_001674095.1 CDS Shal_1871 NC_010334.1 2245112 2245888 R PFAM: beta-lactamase domain protein; KEGG: sfr:Sfri_2207 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(2245112..2245888) Shewanella halifaxensis HAW-EB4 5904005 YP_001674096.1 CDS Shal_1872 NC_010334.1 2246025 2246765 D PFAM: Methyltransferase type 11; KEGG: sbm:Shew185_2012 methyltransferase type 11; type 11 methyltransferase 2246025..2246765 Shewanella halifaxensis HAW-EB4 5904006 YP_001674097.1 CDS Shal_1873 NC_010334.1 2246805 2247701 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_2013 transcriptional regulator, LysR family; LysR family transcriptional regulator 2246805..2247701 Shewanella halifaxensis HAW-EB4 5904057 YP_001674098.1 CDS rnhA NC_010334.1 2247813 2248298 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(2247813..2248298) Shewanella halifaxensis HAW-EB4 5904031 YP_001674099.1 CDS Shal_1875 NC_010334.1 2248372 2249100 D KEGG: slo:Shew_2111 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2248372..2249100 Shewanella halifaxensis HAW-EB4 5904032 YP_001674100.1 CDS Shal_1876 NC_010334.1 2249111 2250445 D KEGG: saz:Sama_1879 hypothetical protein; hypothetical protein 2249111..2250445 Shewanella halifaxensis HAW-EB4 5903244 YP_001674101.1 CDS Shal_1877 NC_010334.1 2251460 2253319 D PFAM: sodium/hydrogen exchanger; KEGG: sbm:Shew185_2017 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2251460..2253319 Shewanella halifaxensis HAW-EB4 5904037 YP_001674102.1 CDS Shal_1878 NC_010334.1 2253938 2255041 D KEGG: sec:SC147 hypothetical protein; hypothetical protein 2253938..2255041 Shewanella halifaxensis HAW-EB4 5903370 YP_001674103.1 CDS Shal_1879 NC_010334.1 2255307 2256353 D PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 2255307..2256353 Shewanella halifaxensis HAW-EB4 5903371 YP_001674104.1 CDS Shal_1880 NC_010334.1 2256647 2258170 D PFAM: Integrase catalytic region; KEGG: kpn:KPN_pKPN3p05906 Sea24; integrase catalytic subunit 2256647..2258170 Shewanella halifaxensis HAW-EB4 5902984 YP_001674105.1 CDS Shal_1881 NC_010334.1 2258968 2260260 D KEGG: ppr:PBPRB0447 putative serine transporter; putative serine transporter 2258968..2260260 Shewanella halifaxensis HAW-EB4 5902985 YP_001674106.1 CDS Shal_1882 NC_010334.1 2260889 2261263 D hypothetical protein 2260889..2261263 Shewanella halifaxensis HAW-EB4 5902746 YP_001674107.1 CDS Shal_1883 NC_010334.1 2261260 2261631 D hypothetical protein 2261260..2261631 Shewanella halifaxensis HAW-EB4 5902747 YP_001674108.1 CDS Shal_1884 NC_010334.1 2262095 2263327 D PFAM: iron-containing alcohol dehydrogenase; KEGG: vha:VIBHAR_02531 hypothetical protein; iron-containing alcohol dehydrogenase 2262095..2263327 Shewanella halifaxensis HAW-EB4 5903246 YP_001674109.1 CDS Shal_1885 NC_010334.1 2263907 2264458 R PFAM: regulatory protein LysR; KEGG: vha:VIBHAR_05843 hypothetical protein; LysR family transcriptional regulator complement(2263907..2264458) Shewanella halifaxensis HAW-EB4 5903247 YP_001674110.1 CDS Shal_1886 NC_010334.1 2264544 2266208 D PFAM: sulfatase; KEGG: pfl:PFL_0205 arylsulfatase; sulfatase 2264544..2266208 Shewanella halifaxensis HAW-EB4 5903895 YP_001674111.1 CDS Shal_1887 NC_010334.1 2266256 2267500 D PFAM: Radical SAM domain protein; KEGG: vfi:VF1417 arylsulfatase regulator (Fe-S oxidoreductase); radical SAM domain-containing protein 2266256..2267500 Shewanella halifaxensis HAW-EB4 5903129 YP_001674112.1 CDS Shal_1888 NC_010334.1 2267794 2269950 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pin:Ping_2142 catalase/peroxidase HPI; catalase/peroxidase HPI 2267794..2269950 Shewanella halifaxensis HAW-EB4 5903130 YP_001674113.1 CDS Shal_1889 NC_010334.1 2270399 2270683 D KEGG: ppr:PBPRB1508 hypothetical protein; hypothetical protein 2270399..2270683 Shewanella halifaxensis HAW-EB4 5903714 YP_001674114.1 CDS fadE NC_010334.1 2271270 2273717 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2271270..2273717) Shewanella halifaxensis HAW-EB4 5903715 YP_001674115.1 CDS Shal_1891 NC_010334.1 2273965 2274750 D PFAM: glutamine amidotransferase class-II; KEGG: slo:Shew_2107 glutamine amidotransferase, class-II; glutamine amidotransferase 2273965..2274750 Shewanella halifaxensis HAW-EB4 5904103 YP_001674116.1 CDS Shal_1892 NC_010334.1 2274853 2275641 R KEGG: sbm:Shew185_2021 hypothetical protein; hypothetical protein complement(2274853..2275641) Shewanella halifaxensis HAW-EB4 5904104 YP_001674117.1 CDS Shal_1893 NC_010334.1 2275799 2276125 R PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: slo:Shew_2105 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2275799..2276125) Shewanella halifaxensis HAW-EB4 5903796 YP_001674118.1 CDS Shal_1894 NC_010334.1 2276363 2277034 D hypothetical protein 2276363..2277034 Shewanella halifaxensis HAW-EB4 5903797 YP_001674119.1 CDS Shal_1895 NC_010334.1 2277205 2278926 R PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_2104 major facilitator superfamily MFS_1; major facilitator transporter complement(2277205..2278926) Shewanella halifaxensis HAW-EB4 5902731 YP_001674120.1 CDS def NC_010334.1 2279175 2279666 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2279175..2279666 Shewanella halifaxensis HAW-EB4 5902732 YP_001674121.1 CDS Shal_1897 NC_010334.1 2279943 2280359 D KEGG: sbl:Sbal_2326 DTW domain containing protein; DTW domain-containing protein 2279943..2280359 Shewanella halifaxensis HAW-EB4 5903043 YP_001674122.1 CDS Shal_1898 NC_010334.1 2280483 2281181 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sbl:Sbal_2325 channel protein, hemolysin III family; hemolysin III family channel protein complement(2280483..2281181) Shewanella halifaxensis HAW-EB4 5903044 YP_001674123.1 CDS Shal_1899 NC_010334.1 2281578 2282543 D KEGG: sbm:Shew185_2324 hypothetical protein; hypothetical protein 2281578..2282543 Shewanella halifaxensis HAW-EB4 5904867 YP_001674124.1 CDS Shal_1900 NC_010334.1 2282952 2284940 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2282952..2284940 Shewanella halifaxensis HAW-EB4 5904868 YP_001674125.1 CDS Shal_1901 NC_010334.1 2284943 2286556 D KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 2284943..2286556 Shewanella halifaxensis HAW-EB4 5904655 YP_001674126.1 CDS Shal_1902 NC_010334.1 2286559 2287446 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sbl:Sbal_2024 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 2286559..2287446 Shewanella halifaxensis HAW-EB4 5904925 YP_001674127.1 CDS Shal_1903 NC_010334.1 2287485 2287757 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: spc:Sputcn32_1925 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2287485..2287757 Shewanella halifaxensis HAW-EB4 5904926 YP_001674128.1 CDS Shal_1904 NC_010334.1 2287759 2288526 D PFAM: thiazole biosynthesis family protein; KEGG: sfr:Sfri_2197 thiazole biosynthesis family protein; thiazole biosynthesis family protein 2287759..2288526 Shewanella halifaxensis HAW-EB4 5904708 YP_001674129.1 CDS thiH NC_010334.1 2288551 2289657 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2288551..2289657 Shewanella halifaxensis HAW-EB4 5905008 YP_001674130.1 CDS Shal_1906 NC_010334.1 2289747 2290058 D KEGG: son:SO_A0047 hypothetical protein; hypothetical protein 2289747..2290058 Shewanella halifaxensis HAW-EB4 5905009 YP_001674131.1 CDS Shal_1907 NC_010334.1 2290367 2290729 R PFAM: response regulator receiver; KEGG: slo:Shew_0703 response regulator receiver protein; response regulator receiver protein complement(2290367..2290729) Shewanella halifaxensis HAW-EB4 5905072 YP_001674132.1 CDS Shal_1908 NC_010334.1 2290987 2291253 D KEGG: saz:Sama_1854 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2290987..2291253 Shewanella halifaxensis HAW-EB4 5905073 YP_001674133.1 CDS Shal_1909 NC_010334.1 2291392 2293848 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ppr:PBPRB1151 hypothetical protein; histidine kinase 2291392..2293848 Shewanella halifaxensis HAW-EB4 5905116 YP_001674134.1 CDS Shal_1910 NC_010334.1 2294060 2295046 R KEGG: slo:Shew_2087 hypothetical protein; hypothetical protein complement(2294060..2295046) Shewanella halifaxensis HAW-EB4 5905117 YP_001674135.1 CDS Shal_1911 NC_010334.1 2295090 2296829 R KEGG: shn:Shewana3_1946 response regulator receiver protein; response regulator receiver protein complement(2295090..2296829) Shewanella halifaxensis HAW-EB4 5904961 YP_001674136.1 CDS Shal_1912 NC_010334.1 2296798 2297748 R TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: slo:Shew_2085 alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein complement(2296798..2297748) Shewanella halifaxensis HAW-EB4 5904962 YP_001674137.1 CDS Shal_1913 NC_010334.1 2297748 2299256 R KEGG: slo:Shew_2084 gonadoliberin III-related protein; gonadoliberin III-like protein complement(2297748..2299256) Shewanella halifaxensis HAW-EB4 5905127 YP_001674138.1 CDS Shal_1914 NC_010334.1 2299268 2300023 R PFAM: protein of unknown function DUF785; KEGG: slo:Shew_2083 protein of unknown function DUF785; hypothetical protein complement(2299268..2300023) Shewanella halifaxensis HAW-EB4 5905128 YP_001674139.1 CDS Shal_1915 NC_010334.1 2300046 2301038 R TIGRFAM: putative methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2082 putative methyltransferase; putative methyltransferase complement(2300046..2301038) Shewanella halifaxensis HAW-EB4 5905029 YP_001674140.1 CDS Shal_1916 NC_010334.1 2301035 2301766 R TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2081 putative methyltransferase; putative methyltransferase complement(2301035..2301766) Shewanella halifaxensis HAW-EB4 5905030 YP_001674141.1 CDS Shal_1917 NC_010334.1 2301947 2304727 D KEGG: spc:Sputcn32_1934 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein family 3; diguanylate cyclase 2301947..2304727 Shewanella halifaxensis HAW-EB4 5904357 YP_001674142.1 CDS aspS NC_010334.1 2304898 2306694 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2304898..2306694 Shewanella halifaxensis HAW-EB4 5904358 YP_001674143.1 CDS Shal_1919 NC_010334.1 2306858 2307601 D PFAM: protein of unknown function DUF28; KEGG: slo:Shew_2078 protein of unknown function DUF28; hypothetical protein 2306858..2307601 Shewanella halifaxensis HAW-EB4 5905348 YP_001674144.1 CDS ruvC NC_010334.1 2307609 2308130 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2307609..2308130 Shewanella halifaxensis HAW-EB4 5905349 YP_001674145.1 CDS ruvA NC_010334.1 2308127 2308744 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2308127..2308744 Shewanella halifaxensis HAW-EB4 5905379 YP_001674146.1 CDS ruvB NC_010334.1 2308754 2309767 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2308754..2309767 Shewanella halifaxensis HAW-EB4 5905380 YP_001674147.1 CDS Shal_1923 NC_010334.1 2310455 2313061 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spc:Sputcn32_1940 TonB-dependent receptor; TonB-dependent receptor 2310455..2313061 Shewanella halifaxensis HAW-EB4 5905365 YP_001674148.1 CDS Shal_1924 NC_010334.1 2313136 2313546 R KEGG: shm:Shewmr7_1867 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2313136..2313546) Shewanella halifaxensis HAW-EB4 5905184 YP_001674149.1 CDS Shal_1925 NC_010334.1 2313964 2314605 R KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(2313964..2314605) Shewanella halifaxensis HAW-EB4 5905185 YP_001674150.1 CDS Shal_1926 NC_010334.1 2314726 2315421 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(2314726..2315421) Shewanella halifaxensis HAW-EB4 5905406 YP_001674151.1 CDS Shal_1927 NC_010334.1 2315418 2316041 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(2315418..2316041) Shewanella halifaxensis HAW-EB4 5905407 YP_001674152.1 CDS rnfD NC_010334.1 2316072 2317124 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(2316072..2317124) Shewanella halifaxensis HAW-EB4 5903297 YP_001674153.1 CDS Shal_1929 NC_010334.1 2317128 2319560 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(2317128..2319560) Shewanella halifaxensis HAW-EB4 5903298 YP_001674154.1 CDS Shal_1930 NC_010334.1 2319554 2320123 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(2319554..2320123) Shewanella halifaxensis HAW-EB4 5905644 YP_001674155.1 CDS Shal_1931 NC_010334.1 2320126 2320704 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E complement(2320126..2320704) Shewanella halifaxensis HAW-EB4 5905645 YP_001674156.1 CDS Shal_1932 NC_010334.1 2320813 2322729 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shn:Shewana3_2167 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(2320813..2322729) Shewanella halifaxensis HAW-EB4 5905603 YP_001674157.1 CDS Shal_1933 NC_010334.1 2324560 2326563 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2324560..2326563 Shewanella halifaxensis HAW-EB4 5906907 YP_001674158.1 CDS Shal_1934 NC_010334.1 2326695 2327297 R PFAM: Rhomboid family protein; KEGG: sbl:Sbal_4542 hypothetical protein; rhomboid family protein complement(2326695..2327297) Shewanella halifaxensis HAW-EB4 5905957 YP_001674159.1 CDS Shal_1935 NC_010334.1 2327285 2327974 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sbl:Sbal_4541 hypothetical protein; exsB protein complement(2327285..2327974) Shewanella halifaxensis HAW-EB4 5906917 YP_001674160.1 CDS Shal_1936 NC_010334.1 2328101 2328769 D PFAM: Radical SAM domain protein; KEGG: spc:Sputcn32_1855 radical activating enzyme; radical SAM domain-containing protein 2328101..2328769 Shewanella halifaxensis HAW-EB4 5906918 YP_001674161.1 CDS Shal_1937 NC_010334.1 2328866 2329942 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbm:Shew185_2117 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(2328866..2329942) Shewanella halifaxensis HAW-EB4 5906525 YP_001674162.1 CDS Shal_1938 NC_010334.1 2331299 2331790 D KEGG: shm:Shewmr7_1918 hypothetical protein; hypothetical protein 2331299..2331790 Shewanella halifaxensis HAW-EB4 5906925 YP_001674163.1 CDS Shal_1939 NC_010334.1 2331865 2332152 D KEGG: slo:Shew_2058 hypothetical protein; hypothetical protein 2331865..2332152 Shewanella halifaxensis HAW-EB4 5906880 YP_001674164.1 CDS Shal_1940 NC_010334.1 2332279 2334453 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: saz:Sama_1821 putative diguanylate phosphodiesterase; PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase 2332279..2334453 Shewanella halifaxensis HAW-EB4 5906827 YP_001674165.1 CDS Shal_1941 NC_010334.1 2334461 2334940 R KEGG: sbl:Sbal_4535 hypothetical protein; hypothetical protein complement(2334461..2334940) Shewanella halifaxensis HAW-EB4 5906828 YP_001674166.1 CDS Shal_1942 NC_010334.1 2334950 2335525 R KEGG: slo:Shew_2055 hypothetical protein; hypothetical protein complement(2334950..2335525) Shewanella halifaxensis HAW-EB4 5906769 YP_001674167.1 CDS Shal_1943 NC_010334.1 2335687 2336277 D PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 2335687..2336277 Shewanella halifaxensis HAW-EB4 5906770 YP_001674168.1 CDS Shal_1944 NC_010334.1 2336361 2336540 R KEGG: slo:Shew_2053 peptidyl-dipeptidase A; hypothetical protein complement(2336361..2336540) Shewanella halifaxensis HAW-EB4 5906452 YP_001674169.1 CDS Shal_1945 NC_010334.1 2336584 2337246 D PFAM: regulatory protein TetR; KEGG: slo:Shew_2052 transcriptional regulator, TetR family; TetR family transcriptional regulator 2336584..2337246 Shewanella halifaxensis HAW-EB4 5906453 YP_001674170.1 CDS Shal_1946 NC_010334.1 2337252 2339534 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2337252..2339534 Shewanella halifaxensis HAW-EB4 5906692 YP_001674171.1 CDS Shal_1947 NC_010334.1 2339988 2341424 R KEGG: slo:Shew_2050 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(2339988..2341424) Shewanella halifaxensis HAW-EB4 5906693 YP_001674172.1 CDS Shal_1948 NC_010334.1 2341609 2342463 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(2341609..2342463) Shewanella halifaxensis HAW-EB4 5906491 YP_001674173.1 CDS Shal_1949 NC_010334.1 2342777 2344249 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2342777..2344249 Shewanella halifaxensis HAW-EB4 5906492 YP_001674174.1 CDS Shal_1950 NC_010334.1 2344260 2344964 D TIGRFAM: 6-phosphogluconolactonase; KEGG: slo:Shew_2047 6-phosphogluconolactonase; 6-phosphogluconolactonase 2344260..2344964 Shewanella halifaxensis HAW-EB4 5906143 YP_001674175.1 CDS Shal_1951 NC_010334.1 2344974 2346800 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2344974..2346800 Shewanella halifaxensis HAW-EB4 5906144 YP_001674176.1 CDS Shal_1952 NC_010334.1 2346822 2347469 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2346822..2347469 Shewanella halifaxensis HAW-EB4 5906315 YP_001674177.1 CDS Shal_1953 NC_010334.1 2347560 2348141 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2347560..2348141) Shewanella halifaxensis HAW-EB4 5906316 YP_001674178.1 CDS Shal_1954 NC_010334.1 2348562 2349581 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: spc:Sputcn32_2100 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2348562..2349581 Shewanella halifaxensis HAW-EB4 5906272 YP_001674179.1 CDS Shal_1955 NC_010334.1 2349608 2350027 D PFAM: regulatory protein MarR; KEGG: sbm:Shew185_2256 transcriptional regulator, MarR family; MarR family transcriptional regulator 2349608..2350027 Shewanella halifaxensis HAW-EB4 5906273 YP_001674180.1 CDS Shal_1956 NC_010334.1 2350361 2351980 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; sulfatase 2350361..2351980 Shewanella halifaxensis HAW-EB4 5906160 YP_001674181.1 CDS Shal_1957 NC_010334.1 2352073 2353125 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2040 diguanylate cyclase; diguanylate cyclase 2352073..2353125 Shewanella halifaxensis HAW-EB4 5906182 YP_001674182.1 CDS Shal_1958 NC_010334.1 2353249 2355951 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: slo:Shew_2039 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2353249..2355951) Shewanella halifaxensis HAW-EB4 5906183 YP_001674183.1 CDS Shal_1960 NC_010334.1 2356544 2357206 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pat:Patl_1418 transcriptional regulator, GntR family; GntR family transcriptional regulator 2356544..2357206 Shewanella halifaxensis HAW-EB4 5906148 YP_001674184.1 CDS prpB NC_010334.1 2357314 2358192 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2357314..2358192 Shewanella halifaxensis HAW-EB4 5906028 YP_001674185.1 CDS Shal_1962 NC_010334.1 2358371 2359510 D KEGG: slo:Shew_1821 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 2358371..2359510 Shewanella halifaxensis HAW-EB4 5906029 YP_001674186.1 CDS Shal_1963 NC_010334.1 2359812 2362445 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2359812..2362445 Shewanella halifaxensis HAW-EB4 5906026 YP_001674187.1 CDS Shal_1964 NC_010334.1 2362693 2363928 D TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; putative AcnD-accessory protein PrpF 2362693..2363928 Shewanella halifaxensis HAW-EB4 5906027 YP_001674188.1 CDS Shal_1965 NC_010334.1 2364469 2364771 D PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2552 hypothetical protein; hypothetical protein 2364469..2364771 Shewanella halifaxensis HAW-EB4 5904704 YP_001674189.1 CDS Shal_1966 NC_010334.1 2365168 2365962 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbl:Sbal_2119 methyltransferase type 12; type 11 methyltransferase 2365168..2365962 Shewanella halifaxensis HAW-EB4 5904705 YP_001674190.1 CDS Shal_1967 NC_010334.1 2365959 2367083 D SMART: HNH nuclease; KEGG: sbm:Shew185_2239 HNH nuclease; HNH nuclease 2365959..2367083 Shewanella halifaxensis HAW-EB4 5907051 YP_001674191.1 CDS Shal_1968 NC_010334.1 2367100 2369559 R KEGG: pin:Ping_0512 PKD domain containing protein; hypothetical protein complement(2367100..2369559) Shewanella halifaxensis HAW-EB4 5907052 YP_001674192.1 CDS Shal_1969 NC_010334.1 2369896 2370954 R PFAM: regulatory protein LuxR; KEGG: ppr:PBPRB1591 hypothetical protein; LuxR family transcriptional regulator complement(2369896..2370954) Shewanella halifaxensis HAW-EB4 5903333 YP_001674193.1 CDS Shal_1970 NC_010334.1 2371166 2372146 D PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein 2371166..2372146 Shewanella halifaxensis HAW-EB4 5903334 YP_001674194.1 CDS Shal_1971 NC_010334.1 2372524 2373093 R KEGG: sfr:Sfri_2082 hypothetical protein; hypothetical protein complement(2372524..2373093) Shewanella halifaxensis HAW-EB4 5905015 YP_001674195.1 CDS Shal_1972 NC_010334.1 2373156 2373374 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: pat:Patl_0965 putative signal transduction protein with EFhand domain; signal transduction protein complement(2373156..2373374) Shewanella halifaxensis HAW-EB4 5905016 YP_001674196.1 CDS Shal_1973 NC_010334.1 2373647 2374240 R PFAM: regulatory protein TetR; KEGG: vfi:VFA0359 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2373647..2374240) Shewanella halifaxensis HAW-EB4 5905621 YP_001674197.1 CDS Shal_1974 NC_010334.1 2374460 2375581 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vfi:VFA0358 acriflavin resistance periplasmic protein; RND family efflux transporter MFP subunit 2374460..2375581 Shewanella halifaxensis HAW-EB4 5905622 YP_001674198.1 CDS Shal_1975 NC_010334.1 2375585 2378638 D PFAM: acriflavin resistance protein; KEGG: vfi:VFA0357 acriflavin resistance plasma membrane protein; acriflavin resistance protein 2375585..2378638 Shewanella halifaxensis HAW-EB4 5905871 YP_001674199.1 CDS Shal_1976 NC_010334.1 2378728 2381013 R PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: mxa:MXAN_0776 von Willebrand factor type A domain protein; vault protein inter-alpha-trypsin subunit complement(2378728..2381013) Shewanella halifaxensis HAW-EB4 5903438 YP_001674200.1 CDS Shal_1977 NC_010334.1 2381016 2381438 R PFAM: regulatory protein MerR; KEGG: shn:Shewana3_1805 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2381016..2381438) Shewanella halifaxensis HAW-EB4 5903439 YP_001674201.1 CDS Shal_1978 NC_010334.1 2381619 2381915 D hypothetical protein 2381619..2381915 Shewanella halifaxensis HAW-EB4 5904848 YP_001674202.1 CDS Shal_1979 NC_010334.1 2382212 2384032 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: saz:Sama_1876 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(2382212..2384032) Shewanella halifaxensis HAW-EB4 5904849 YP_001674203.1 CDS Shal_1980 NC_010334.1 2384390 2385058 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: saz:Sama_1873 response regulator receiver protein; two component LuxR family transcriptional regulator complement(2384390..2385058) Shewanella halifaxensis HAW-EB4 5904574 YP_001674204.1 CDS Shal_1981 NC_010334.1 2385051 2388257 R PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; histidine kinase dimerisation and phosphoacceptor region; KEGG: saz:Sama_1872 sensor histidine kinase; histidine kinase complement(2385051..2388257) Shewanella halifaxensis HAW-EB4 5904575 YP_001674205.1 CDS Shal_1982 NC_010334.1 2388507 2389136 D KEGG: saz:Sama_1874 hypothetical protein; hypothetical protein 2388507..2389136 Shewanella halifaxensis HAW-EB4 5905490 YP_001674206.1 CDS Shal_1983 NC_010334.1 2389136 2391577 D KEGG: saz:Sama_1875 hypothetical protein; hypothetical protein 2389136..2391577 Shewanella halifaxensis HAW-EB4 5905491 YP_001674207.1 CDS Shal_1984 NC_010334.1 2392284 2392949 R PFAM: Glutathione S-transferase domain; KEGG: rle:RL0881 putative glutathione S-transferase; glutathione S-transferase domain-containing protein complement(2392284..2392949) Shewanella halifaxensis HAW-EB4 5904651 YP_001674208.1 CDS Shal_1985 NC_010334.1 2393011 2393568 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vha:VIBHAR_05274 hypothetical protein; NAD(P)H dehydrogenase (quinone) complement(2393011..2393568) Shewanella halifaxensis HAW-EB4 5904652 YP_001674209.1 CDS Shal_1986 NC_010334.1 2394606 2394956 D TIGRFAM: Phasin family protein; KEGG: ppr:PBPRB1839 hypothetical protein; phasin family protein 2394606..2394956 Shewanella halifaxensis HAW-EB4 5905123 YP_001674210.1 CDS Shal_1987 NC_010334.1 2395051 2396808 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: ppr:PBPRB0352 putative polyhydroxyalkanoic acid synthase; poly(R)-hydroxyalkanoic acid synthase 2395051..2396808 Shewanella halifaxensis HAW-EB4 5905124 YP_001674211.1 CDS Shal_1988 NC_010334.1 2396798 2397199 D PFAM: MaoC domain protein dehydratase; KEGG: aha:AHA_2422 enoyl-CoA hydratase; dehydratase 2396798..2397199 Shewanella halifaxensis HAW-EB4 5904478 YP_001674212.1 CDS Shal_1989 NC_010334.1 2397820 2398038 D PFAM: Calcium-binding EF-hand-containing protein; KEGG: pat:Patl_0965 putative signal transduction protein with EFhand domain; signal transduction protein 2397820..2398038 Shewanella halifaxensis HAW-EB4 5904479 YP_001674213.1 CDS Shal_1990 NC_010334.1 2398726 2399724 D KEGG: dar:Daro_1033 hypothetical protein; hypothetical protein 2398726..2399724 Shewanella halifaxensis HAW-EB4 5904334 YP_001674214.1 CDS Shal_1991 NC_010334.1 2399933 2401618 R PFAM: glutathione synthase; glutathione synthase ATP-binding; KEGG: shw:Sputw3181_2944 glutathione synthase; glutathione synthase complement(2399933..2401618) Shewanella halifaxensis HAW-EB4 5904335 YP_001674215.1 CDS Shal_1992 NC_010334.1 2402239 2402655 D KEGG: pha:PSHAa1559 hypothetical protein; hypothetical protein 2402239..2402655 Shewanella halifaxensis HAW-EB4 5905217 YP_001674216.1 CDS Shal_1993 NC_010334.1 2402804 2403886 R PFAM: protein of unknown function UPF0118; KEGG: vfi:VF2136 hypothetical membrane spanning protein; hypothetical protein complement(2402804..2403886) Shewanella halifaxensis HAW-EB4 5905218 YP_001674217.1 CDS Shal_1994 NC_010334.1 2404817 2406064 D KEGG: son:SO_A0050 toxin secretion, membrane fusion protein; toxin secretion, membrane fusion protein 2404817..2406064 Shewanella halifaxensis HAW-EB4 5904774 YP_001674218.1 CDS Shal_1998 NC_010334.1 2409470 2410288 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3311 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(2409470..2410288) Shewanella halifaxensis HAW-EB4 5905283 YP_001674219.1 CDS Shal_1999 NC_010334.1 2410372 2411352 D PFAM: protein of unknown function DUF1568; KEGG: pin:Ping_3091 hypothetical protein DUF1568; hypothetical protein 2410372..2411352 Shewanella halifaxensis HAW-EB4 5906111 YP_001674220.1 CDS Shal_2000 NC_010334.1 2411720 2412061 R hypothetical protein complement(2411720..2412061) Shewanella halifaxensis HAW-EB4 5906112 YP_001674221.1 CDS Shal_2001 NC_010334.1 2412426 2415467 D PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: sfr:Sfri_0452 UvrD/REP helicase; UvrD/REP helicase 2412426..2415467 Shewanella halifaxensis HAW-EB4 5906349 YP_001674222.1 CDS Shal_2002 NC_010334.1 2415479 2415748 R hypothetical protein complement(2415479..2415748) Shewanella halifaxensis HAW-EB4 5906350 YP_001674223.1 CDS Shal_2003 NC_010334.1 2415867 2417861 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2415867..2417861 Shewanella halifaxensis HAW-EB4 5904609 YP_001674224.1 CDS Shal_2004 NC_010334.1 2418058 2418903 D PFAM: phospholipase A1; KEGG: vha:VIBHAR_02841 hypothetical protein; phospholipase A1 2418058..2418903 Shewanella halifaxensis HAW-EB4 5904610 YP_001674225.1 CDS Shal_2005 NC_010334.1 2418903 2419556 D PFAM: transferase hexapeptide repeat containing protein; KEGG: vfi:VFA0790 chloramphenicol acetyltransferase; hexapaptide repeat-containing transferase 2418903..2419556 Shewanella halifaxensis HAW-EB4 5904842 YP_001674226.1 CDS Shal_2006 NC_010334.1 2419642 2421252 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA1657 putative Uup, ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter-like protein complement(2419642..2421252) Shewanella halifaxensis HAW-EB4 5904843 YP_001674227.1 CDS Shal_2007 NC_010334.1 2421515 2422504 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02466 transcriptional regulator; LacI family transcriptional regulator complement(2421515..2422504) Shewanella halifaxensis HAW-EB4 5906206 YP_001674228.1 CDS Shal_2008 NC_010334.1 2422839 2423873 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plu:plu1960 hypothetical protein; alcohol dehydrogenase 2422839..2423873 Shewanella halifaxensis HAW-EB4 5906207 YP_001674229.1 CDS Shal_2009 NC_010334.1 2423877 2425424 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: mmw:Mmwyl1_1989 xylulokinase; xylulokinase 2423877..2425424 Shewanella halifaxensis HAW-EB4 5906533 YP_001674230.1 CDS Shal_2010 NC_010334.1 2425417 2426901 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0612 sugar ABC transporter ATP-binding component; ABC transporter-like protein 2425417..2426901 Shewanella halifaxensis HAW-EB4 5906534 YP_001674231.1 CDS Shal_2011 NC_010334.1 2426911 2427948 D PFAM: inner-membrane translocator; KEGG: ypi:YpsIP31758_0911 ribose ABC transporter, permease protein; monosaccharide-transporting ATPase 2426911..2427948 Shewanella halifaxensis HAW-EB4 5905734 YP_001674232.1 CDS Shal_2012 NC_010334.1 2428018 2429019 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rru:Rru_A0247 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator 2428018..2429019 Shewanella halifaxensis HAW-EB4 5905735 YP_001674233.1 CDS Shal_2013 NC_010334.1 2429069 2429593 R KEGG: bld:BLi00510 YdaE; hypothetical protein complement(2429069..2429593) Shewanella halifaxensis HAW-EB4 5905525 YP_001674234.1 CDS Shal_2014 NC_010334.1 2429988 2430485 D KEGG: sfr:Sfri_0770 hypothetical protein; hypothetical protein 2429988..2430485 Shewanella halifaxensis HAW-EB4 5905526 YP_001674235.1 CDS Shal_2015 NC_010334.1 2433000 2433377 D KEGG: vvy:VV3212 hypothetical protein; hypothetical protein 2433000..2433377 Shewanella halifaxensis HAW-EB4 5903806 YP_001674236.1 CDS Shal_2016 NC_010334.1 2433859 2435217 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: slo:Shew_2037 MATE efflux family protein; MATE efflux family protein complement(2433859..2435217) Shewanella halifaxensis HAW-EB4 5904136 YP_001674237.1 CDS Shal_2017 NC_010334.1 2435250 2435867 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2435250..2435867 Shewanella halifaxensis HAW-EB4 5904042 YP_001674238.1 CDS Shal_2018 NC_010334.1 2435920 2436120 R KEGG: shn:Shewana3_2041 hypothetical protein; hypothetical protein complement(2435920..2436120) Shewanella halifaxensis HAW-EB4 5904043 YP_001674239.1 CDS Shal_2019 NC_010334.1 2436123 2436875 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saz:Sama_1764 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2436123..2436875) Shewanella halifaxensis HAW-EB4 5903854 YP_001674240.1 CDS Shal_2020 NC_010334.1 2437381 2439309 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2437381..2439309 Shewanella halifaxensis HAW-EB4 5903855 YP_001674241.1 CDS Shal_2021 NC_010334.1 2439427 2439855 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: saz:Sama_1766 translation initiation factor IF-3; translation initiation factor IF-3 2439427..2439855 Shewanella halifaxensis HAW-EB4 5903474 YP_001674242.1 CDS rpmI NC_010334.1 2439942 2440136 D PFAM: ribosomal protein L35; KEGG: slo:Shew_2030 ribosomal protein L35; 50S ribosomal protein L35 2439942..2440136 Shewanella halifaxensis HAW-EB4 5903475 YP_001674243.1 CDS rplT NC_010334.1 2440155 2440514 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2440155..2440514 Shewanella halifaxensis HAW-EB4 5903590 YP_001674244.1 CDS Shal_2024 NC_010334.1 2440827 2441780 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2028 thioredoxin reductase; thioredoxin reductase complement(2440827..2441780) Shewanella halifaxensis HAW-EB4 5903591 YP_001674245.1 CDS Shal_2025 NC_010334.1 2442071 2443198 D PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_1937 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 2442071..2443198 Shewanella halifaxensis HAW-EB4 5903638 YP_001674246.1 CDS Shal_2026 NC_010334.1 2443227 2443544 D KEGG: slo:Shew_1938 hypothetical protein; hypothetical protein 2443227..2443544 Shewanella halifaxensis HAW-EB4 5903639 YP_001674247.1 CDS Shal_2027 NC_010334.1 2443541 2443822 D PFAM: protein of unknown function DUF1315; KEGG: slo:Shew_1939 protein of unknown function DUF1315; hypothetical protein 2443541..2443822 Shewanella halifaxensis HAW-EB4 5904388 YP_001674248.1 CDS ansA NC_010334.1 2443893 2444909 R converts asparagine to aspartate and ammonia; asparaginase complement(2443893..2444909) Shewanella halifaxensis HAW-EB4 5904389 YP_001674249.1 CDS Shal_2029 NC_010334.1 2445141 2446982 R KEGG: slo:Shew_1941 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA complement(2445141..2446982) Shewanella halifaxensis HAW-EB4 5904701 YP_001674250.1 CDS Shal_2030 NC_010334.1 2447138 2449153 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2447138..2449153 Shewanella halifaxensis HAW-EB4 5904702 YP_001674251.1 CDS Shal_2031 NC_010334.1 2449299 2450432 R PFAM: phosphatidylserine decarboxylase-related; KEGG: pmf:P9303_20791 hypothetical protein; phosphatidylserine decarboxylase complement(2449299..2450432) Shewanella halifaxensis HAW-EB4 5904340 YP_001674252.1 CDS Shal_2032 NC_010334.1 2451026 2451388 D PFAM: conserved hypothetical protein; KEGG: vfi:VF1977 protein YgiW precursor; hypothetical protein 2451026..2451388 Shewanella halifaxensis HAW-EB4 5904341 YP_001674253.1 CDS Shal_2033 NC_010334.1 2451592 2452482 R KEGG: sfr:Sfri_2116 hypothetical protein; hypothetical protein complement(2451592..2452482) Shewanella halifaxensis HAW-EB4 5904837 YP_001674254.1 CDS Shal_2034 NC_010334.1 2452784 2453167 R PFAM: ferredoxin; KEGG: slo:Shew_1944 ferredoxin; ferredoxin complement(2452784..2453167) Shewanella halifaxensis HAW-EB4 5903408 YP_001674255.1 CDS nrdB NC_010334.1 2453136 2454266 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(2453136..2454266) Shewanella halifaxensis HAW-EB4 5903409 YP_001674256.1 CDS Shal_2036 NC_010334.1 2454338 2456626 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2454338..2456626) Shewanella halifaxensis HAW-EB4 5903462 YP_001674257.1 CDS Shal_2037 NC_010334.1 2457096 2457773 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfr:Sfri_2132 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(2457096..2457773) Shewanella halifaxensis HAW-EB4 5903463 YP_001674258.1 CDS Shal_2038 NC_010334.1 2457766 2458476 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2457766..2458476) Shewanella halifaxensis HAW-EB4 5905236 YP_001674259.1 CDS Shal_2039 NC_010334.1 2458757 2461483 D KEGG: sfr:Sfri_2130 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 2458757..2461483 Shewanella halifaxensis HAW-EB4 5905237 YP_001674260.1 CDS Shal_2040 NC_010334.1 2461611 2462768 R PFAM: beta-lactamase; KEGG: slo:Shew_1968 beta-lactamase; beta-lactamase complement(2461611..2462768) Shewanella halifaxensis HAW-EB4 5905049 YP_001674261.1 CDS Shal_2041 NC_010334.1 2463191 2464282 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2463191..2464282 Shewanella halifaxensis HAW-EB4 5905050 YP_001674262.1 CDS Shal_2042 NC_010334.1 2464385 2465620 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2464385..2465620) Shewanella halifaxensis HAW-EB4 5905200 YP_001674263.1 CDS Shal_2043 NC_010334.1 2466009 2467289 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2466009..2467289 Shewanella halifaxensis HAW-EB4 5905201 YP_001674264.1 CDS cmk NC_010334.1 2467469 2468161 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2467469..2468161 Shewanella halifaxensis HAW-EB4 5905811 YP_001674265.1 CDS rpsA NC_010334.1 2468259 2469926 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2468259..2469926 Shewanella halifaxensis HAW-EB4 5905812 YP_001674266.1 CDS ihfB NC_010334.1 2469999 2470286 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2469999..2470286 Shewanella halifaxensis HAW-EB4 5905860 YP_001674267.1 CDS Shal_2047 NC_010334.1 2470397 2470729 D PFAM: protein of unknown function DUF1049; KEGG: slo:Shew_1956 protein of unknown function DUF1049; hypothetical protein 2470397..2470729 Shewanella halifaxensis HAW-EB4 5905861 YP_001674268.1 CDS Shal_2048 NC_010334.1 2470731 2471891 D KEGG: slo:Shew_1957 hypothetical protein; hypothetical protein 2470731..2471891 Shewanella halifaxensis HAW-EB4 5906751 YP_001674269.1 CDS Shal_2049 NC_010334.1 2471958 2472653 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2471958..2472653 Shewanella halifaxensis HAW-EB4 5906752 YP_001674270.1 CDS Shal_2050 NC_010334.1 2472729 2473535 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbm:Shew185_2274 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2472729..2473535 Shewanella halifaxensis HAW-EB4 5905469 YP_001674271.1 CDS Shal_2051 NC_010334.1 2473597 2474139 D KEGG: slo:Shew_1960 hypothetical protein; hypothetical protein 2473597..2474139 Shewanella halifaxensis HAW-EB4 5905470 YP_001674272.1 CDS Shal_2052 NC_010334.1 2474377 2474727 D PFAM: protein of unknown function DUF486; KEGG: vco:VC0395_A1178 hypothetical protein; hypothetical protein 2474377..2474727 Shewanella halifaxensis HAW-EB4 5906753 YP_001674273.1 CDS Shal_2053 NC_010334.1 2474892 2475839 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(2474892..2475839) Shewanella halifaxensis HAW-EB4 5906399 YP_001674274.1 CDS Shal_2054 NC_010334.1 2476171 2477931 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbm:Shew185_2272 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2476171..2477931 Shewanella halifaxensis HAW-EB4 5906400 YP_001674275.1 CDS Shal_2055 NC_010334.1 2478080 2479510 R KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2478080..2479510) Shewanella halifaxensis HAW-EB4 5906016 YP_001674276.1 CDS Shal_2056 NC_010334.1 2479549 2479725 R KEGG: sbl:Sbal_2079 hypothetical protein; hypothetical protein complement(2479549..2479725) Shewanella halifaxensis HAW-EB4 5906017 YP_001674277.1 CDS Shal_2057 NC_010334.1 2479978 2480310 D PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein; hypothetical protein 2479978..2480310 Shewanella halifaxensis HAW-EB4 5905932 YP_001674278.1 CDS pssA NC_010334.1 2480294 2481634 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2480294..2481634 Shewanella halifaxensis HAW-EB4 5905933 YP_001674279.1 CDS Shal_2059 NC_010334.1 2481729 2482505 D PFAM: DTW domain containing protein; KEGG: slo:Shew_1966 DTW domain containing protein; DTW domain-containing protein 2481729..2482505 Shewanella halifaxensis HAW-EB4 5907045 YP_001674280.1 CDS Shal_2060 NC_010334.1 2482838 2482996 D hypothetical protein 2482838..2482996 Shewanella halifaxensis HAW-EB4 5907046 YP_001674281.1 CDS Shal_2061 NC_010334.1 2483023 2483622 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1969 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2483023..2483622) Shewanella halifaxensis HAW-EB4 5906156 YP_001674282.1 CDS Shal_2062 NC_010334.1 2483615 2485399 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1970 histidine kinase; histidine kinase complement(2483615..2485399) Shewanella halifaxensis HAW-EB4 5906157 YP_001674283.1 CDS Shal_2063 NC_010334.1 2485625 2486848 R PFAM: ApbE family lipoprotein; KEGG: slo:Shew_1971 ApbE family lipoprotein; ApbE family lipoprotein complement(2485625..2486848) Shewanella halifaxensis HAW-EB4 5905439 YP_001674284.1 CDS Shal_2064 NC_010334.1 2487015 2488397 D PFAM: FMN-binding domain protein; KEGG: slo:Shew_1972 FMN-binding domain protein; FMN-binding domain-containing protein 2487015..2488397 Shewanella halifaxensis HAW-EB4 5905440 YP_001674285.1 CDS Shal_2065 NC_010334.1 2488481 2489521 D PFAM: porin Gram-negative type; KEGG: slo:Shew_1973 porin, gram-negative type; porin 2488481..2489521 Shewanella halifaxensis HAW-EB4 5905357 YP_001674286.1 CDS Shal_2066 NC_010334.1 2490108 2490848 D PFAM: pseudouridine synthase; KEGG: asa:ASA_2900 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2490108..2490848 Shewanella halifaxensis HAW-EB4 5905358 YP_001674287.1 CDS Shal_2067 NC_010334.1 2490977 2492092 R PFAM: integrase family protein; KEGG: sbm:Shew185_2263 phage integrase family protein; integrase family protein complement(2490977..2492092) Shewanella halifaxensis HAW-EB4 5905285 YP_001674288.1 CDS Shal_2068 NC_010334.1 2492960 2493466 D KEGG: sbm:Shew185_2262 hypothetical protein; hypothetical protein 2492960..2493466 Shewanella halifaxensis HAW-EB4 5905286 YP_001674289.1 CDS Shal_2069 NC_010334.1 2493622 2494647 R PFAM: protein of unknown function DUF227; SMART: CHK kinase-like; KEGG: dre:797003 hypothetical protein LOC797003; hypothetical protein complement(2493622..2494647) Shewanella halifaxensis HAW-EB4 5904881 YP_001674290.1 CDS Shal_2070 NC_010334.1 2494803 2495192 D KEGG: pnu:Pnuc_1464 hypothetical protein; hypothetical protein 2494803..2495192 Shewanella halifaxensis HAW-EB4 5904882 YP_001674291.1 CDS Shal_2071 NC_010334.1 2495819 2496511 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VP2146 putative oxidoreductase protein; short-chain dehydrogenase/reductase SDR 2495819..2496511 Shewanella halifaxensis HAW-EB4 5904906 YP_001674292.1 CDS Shal_2072 NC_010334.1 2496871 2498247 D TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; protein of unknown function DUF785; RimK domain protein ATP-grasp; KEGG: fjo:Fjoh_2582 alpha-L-glutamate ligase, RimK family; alpha-L-glutamate ligase 2496871..2498247 Shewanella halifaxensis HAW-EB4 5904846 YP_001674293.1 CDS Shal_2073 NC_010334.1 2498439 2498765 D KEGG: slo:Shew_2004 hypothetical protein; hypothetical protein 2498439..2498765 Shewanella halifaxensis HAW-EB4 5904847 YP_001674294.1 CDS Shal_2076 NC_010334.1 2501029 2502039 R KEGG: slo:Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(2501029..2502039) Shewanella halifaxensis HAW-EB4 5905225 YP_001674295.1 CDS Shal_2077 NC_010334.1 2502260 2503102 R KEGG: saz:Sama_1807 hypothetical protein; hypothetical protein complement(2502260..2503102) Shewanella halifaxensis HAW-EB4 5904835 YP_001674296.1 CDS Shal_2078 NC_010334.1 2503325 2504761 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2503325..2504761 Shewanella halifaxensis HAW-EB4 5904836 YP_001674297.1 CDS Shal_2079 NC_010334.1 2506246 2506575 R PFAM: DsrC family protein; KEGG: sfr:Sfri_1800 DsrC family protein; DsrC family protein complement(2506246..2506575) Shewanella halifaxensis HAW-EB4 5905088 YP_001674298.1 CDS Shal_2080 NC_010334.1 2506577 2506858 R PFAM: DsrH family protein; KEGG: shw:Sputw3181_2008 DsrH family protein; DsrH family protein complement(2506577..2506858) Shewanella halifaxensis HAW-EB4 5905702 YP_001674299.1 CDS Shal_2081 NC_010334.1 2506858 2507214 R PFAM: DsrE family protein; KEGG: sbm:Shew185_2207 DsrE family protein; DsrE family protein complement(2506858..2507214) Shewanella halifaxensis HAW-EB4 5904306 YP_001674300.1 CDS Shal_2082 NC_010334.1 2507223 2507612 R PFAM: DsrE family protein; KEGG: slo:Shew_2015 DsrE family protein; DsrE family protein complement(2507223..2507612) Shewanella halifaxensis HAW-EB4 5904307 YP_001674301.1 CDS Shal_2083 NC_010334.1 2507670 2508332 R PFAM: protein of unknown function UPF0005; KEGG: sbm:Shew185_2205 protein of unknown function UPF0005; hypothetical protein complement(2507670..2508332) Shewanella halifaxensis HAW-EB4 5904288 YP_001674302.1 CDS Shal_2084 NC_010334.1 2508504 2509406 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2013 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator complement(2508504..2509406) Shewanella halifaxensis HAW-EB4 5904289 YP_001674303.1 CDS Shal_2085 NC_010334.1 2509537 2510769 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2509537..2510769 Shewanella halifaxensis HAW-EB4 5903331 YP_001674304.1 CDS Shal_2086 NC_010334.1 2511163 2511942 R KEGG: pha:PSHAa2145 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase; 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase complement(2511163..2511942) Shewanella halifaxensis HAW-EB4 5903444 YP_001674305.1 CDS Shal_2087 NC_010334.1 2512069 2513448 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pha:PSHAa2144 transporter; major facilitator transporter complement(2512069..2513448) Shewanella halifaxensis HAW-EB4 5903029 YP_001674306.1 CDS Shal_2088 NC_010334.1 2513451 2514473 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(2513451..2514473) Shewanella halifaxensis HAW-EB4 5902819 YP_001674307.1 CDS Shal_2089 NC_010334.1 2514483 2515406 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(2514483..2515406) Shewanella halifaxensis HAW-EB4 5902820 YP_001674308.1 CDS Shal_2090 NC_010334.1 2515451 2516266 R PFAM: Hydratase/decarboxylase; KEGG: pha:PSHAa2141 2-hydroxypent-2,4-dienoate hydratase (HPH) (2-oxopent-4-enoate hydratase); 4-oxalocrotonate decarboxylase complement(2515451..2516266) Shewanella halifaxensis HAW-EB4 5902707 YP_001674309.1 CDS Shal_2091 NC_010334.1 2516276 2517244 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pha:PSHAa2140 TesA protein; flavin reductase domain-containing protein complement(2516276..2517244) Shewanella halifaxensis HAW-EB4 5902708 YP_001674310.1 CDS Shal_2092 NC_010334.1 2517534 2518958 D PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa2139 aldehyde dehydrogenase; aldehyde dehydrogenase 2517534..2518958 Shewanella halifaxensis HAW-EB4 5903021 YP_001674311.1 CDS Shal_2093 NC_010334.1 2519063 2520157 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pha:PSHAa2137 protein with ferredoxin subunits; Rieske (2Fe-2S) domain-containing protein complement(2519063..2520157) Shewanella halifaxensis HAW-EB4 5903022 YP_001674312.1 CDS Shal_2094 NC_010334.1 2520235 2521620 R PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2136 transporter; major facilitator transporter complement(2520235..2521620) Shewanella halifaxensis HAW-EB4 5903400 YP_001674313.1 CDS Shal_2095 NC_010334.1 2521796 2522899 D PFAM: beta-lactamase domain protein; KEGG: pha:PSHAa2135 metallo-dependent enzymatic protein; beta-lactamase domain-containing protein 2521796..2522899 Shewanella halifaxensis HAW-EB4 5903401 YP_001674314.1 CDS Shal_2096 NC_010334.1 2522944 2524644 D PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa2134 AMP-binding enzyme; AMP-dependent synthetase and ligase 2522944..2524644 Shewanella halifaxensis HAW-EB4 5902651 YP_001674315.1 CDS Shal_2097 NC_010334.1 2524911 2526680 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pha:PSHAa2133 3-ketosteroid-delta1-dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2524911..2526680 Shewanella halifaxensis HAW-EB4 5902652 YP_001674316.1 CDS Shal_2098 NC_010334.1 2526866 2528506 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2526866..2528506 Shewanella halifaxensis HAW-EB4 5903284 YP_001674317.1 CDS Shal_2099 NC_010334.1 2528885 2531323 R KEGG: reu:Reut_A1574 hypothetical protein; hypothetical protein complement(2528885..2531323) Shewanella halifaxensis HAW-EB4 5903285 YP_001674318.1 CDS Shal_2100 NC_010334.1 2531346 2532365 R KEGG: bur:Bcep18194_B1446 glycosyl hydrolase; glycosyl hydrolase complement(2531346..2532365) Shewanella halifaxensis HAW-EB4 5903030 YP_001674319.1 CDS Shal_2101 NC_010334.1 2532756 2533979 D PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0877 steroid degradation protein; acyl-CoA dehydrogenase type 2 2532756..2533979 Shewanella halifaxensis HAW-EB4 5903031 YP_001674320.1 CDS Shal_2102 NC_010334.1 2534020 2535105 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pha:PSHAa0878 reductase protein; oxidoreductase FAD-binding subunit 2534020..2535105 Shewanella halifaxensis HAW-EB4 5904715 YP_001674321.1 CDS Shal_2103 NC_010334.1 2535582 2536370 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0879 3-oxoacyl-(ACP) reductase; short-chain dehydrogenase/reductase SDR 2535582..2536370 Shewanella halifaxensis HAW-EB4 5904716 YP_001674322.1 CDS Shal_2104 NC_010334.1 2536378 2537481 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pha:PSHAa0880 NADPH dehydrogenase; NADH:flavin oxidoreductase 2536378..2537481 Shewanella halifaxensis HAW-EB4 5903212 YP_001674323.1 CDS Shal_2105 NC_010334.1 2537507 2538256 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dar:Daro_1211 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta 2537507..2538256 Shewanella halifaxensis HAW-EB4 5904536 YP_001674324.1 CDS Shal_2106 NC_010334.1 2538269 2539222 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: eba:ebA6510 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 2538269..2539222 Shewanella halifaxensis HAW-EB4 5904537 YP_001674325.1 CDS Shal_2107 NC_010334.1 2539311 2540504 D PFAM: regulatory protein LuxR; KEGG: pha:PSHAa0881 LuxR-type transcription regulator required for testosterone degradation; LuxR family transcriptional regulator 2539311..2540504 Shewanella halifaxensis HAW-EB4 5904428 YP_001674326.1 CDS Shal_2108 NC_010334.1 2540576 2541358 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2540576..2541358) Shewanella halifaxensis HAW-EB4 5904429 YP_001674327.1 CDS Shal_2109 NC_010334.1 2541605 2542375 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0883 short chain dehydrogenase; short chain dehydrogenase 2541605..2542375 Shewanella halifaxensis HAW-EB4 5904272 YP_001674328.1 CDS Shal_2110 NC_010334.1 2542500 2543483 D PFAM: protein of unknown function DUF35; KEGG: pha:PSHAa0884 hypothetical protein; hypothetical protein 2542500..2543483 Shewanella halifaxensis HAW-EB4 5904273 YP_001674329.1 CDS Shal_2111 NC_010334.1 2543496 2544623 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0885 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2543496..2544623 Shewanella halifaxensis HAW-EB4 5904254 YP_001674330.1 CDS Shal_2112 NC_010334.1 2544610 2545059 D PFAM: MaoC domain protein dehydratase; KEGG: pha:PSHAa0886 hypothetical protein; dehydratase 2544610..2545059 Shewanella halifaxensis HAW-EB4 5904255 YP_001674331.1 CDS Shal_2113 NC_010334.1 2545073 2546251 D KEGG: pha:PSHAa0887 lipid-transfer protein; lipid-transfer protein 2545073..2546251 Shewanella halifaxensis HAW-EB4 5903447 YP_001674332.1 CDS Shal_2114 NC_010334.1 2546254 2547423 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0888 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2546254..2547423 Shewanella halifaxensis HAW-EB4 5903448 YP_001674333.1 CDS Shal_2115 NC_010334.1 2547443 2548681 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0889 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2547443..2548681 Shewanella halifaxensis HAW-EB4 5903865 YP_001674334.1 CDS Shal_2116 NC_010334.1 2548678 2549883 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0890 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2548678..2549883 Shewanella halifaxensis HAW-EB4 5903866 YP_001674335.1 CDS Shal_2117 NC_010334.1 2550163 2552283 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAa0892 electron acceptor reductase/NADH oxidase, FAD binding, iron-sulfur cluster binding site; NADH:flavin oxidoreductase complement(2550163..2552283) Shewanella halifaxensis HAW-EB4 5902869 YP_001674336.1 CDS Shal_2118 NC_010334.1 2552445 2553281 R PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa0893 hydrolase acting on oxygenated substrates (epoxide hydrolase); alpha/beta hydrolase fold protein complement(2552445..2553281) Shewanella halifaxensis HAW-EB4 5902870 YP_001674337.1 CDS Shal_2119 NC_010334.1 2553600 2554343 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa0894 3-ketoacyl-(ACP) reductase; short-chain dehydrogenase/reductase SDR 2553600..2554343 Shewanella halifaxensis HAW-EB4 5903288 YP_001674338.1 CDS Shal_2120 NC_010334.1 2554353 2554979 D KEGG: pha:PSHAa0895 enzyme; hypothetical protein 2554353..2554979 Shewanella halifaxensis HAW-EB4 5903289 YP_001674339.1 CDS Shal_2121 NC_010334.1 2555045 2556910 D activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 2555045..2556910 Shewanella halifaxensis HAW-EB4 5902966 YP_001674340.1 CDS Shal_2122 NC_010334.1 2556923 2558134 D KEGG: pha:PSHAa0897 nonspecific lipid-transfer protein; nonspecific lipid-transfer protein 2556923..2558134 Shewanella halifaxensis HAW-EB4 5902967 YP_001674341.1 CDS Shal_2123 NC_010334.1 2558137 2559072 D PFAM: MaoC domain protein dehydratase; protein of unknown function DUF35; KEGG: pha:PSHAa0898 acyl dehydratase; hypothetical protein 2558137..2559072 Shewanella halifaxensis HAW-EB4 5904864 YP_001674342.1 CDS Shal_2124 NC_010334.1 2559265 2560167 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pha:PSHAa0900 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2559265..2560167 Shewanella halifaxensis HAW-EB4 5903292 YP_001674343.1 CDS Shal_2125 NC_010334.1 2560168 2561043 D PFAM: coenzyme A transferase; KEGG: pha:PSHAa0901 acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; coenzyme A transferase 2560168..2561043 Shewanella halifaxensis HAW-EB4 5903293 YP_001674344.1 CDS Shal_2126 NC_010334.1 2561118 2561948 D PFAM: coenzyme A transferase; KEGG: pha:PSHAa0902 acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; coenzyme A transferase 2561118..2561948 Shewanella halifaxensis HAW-EB4 5904939 YP_001674345.1 CDS Shal_2127 NC_010334.1 2561948 2562904 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2561948..2562904 Shewanella halifaxensis HAW-EB4 5904940 YP_001674346.1 CDS Shal_2128 NC_010334.1 2562901 2564055 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: pha:PSHAa0904 dioxygenase; 2-nitropropane dioxygenase 2562901..2564055 Shewanella halifaxensis HAW-EB4 5904829 YP_001674347.1 CDS Shal_2129 NC_010334.1 2564058 2564843 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2564058..2564843 Shewanella halifaxensis HAW-EB4 5904830 YP_001674348.1 CDS Shal_2130 NC_010334.1 2564874 2566031 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0906 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2564874..2566031 Shewanella halifaxensis HAW-EB4 5905146 YP_001674349.1 CDS Shal_2131 NC_010334.1 2566040 2567116 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0907 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2566040..2567116 Shewanella halifaxensis HAW-EB4 5905147 YP_001674350.1 CDS Shal_2132 NC_010334.1 2567116 2568270 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2567116..2568270 Shewanella halifaxensis HAW-EB4 5904972 YP_001674351.1 CDS Shal_2133 NC_010334.1 2568326 2569204 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0909 short chain dehydrogenase; short chain dehydrogenase 2568326..2569204 Shewanella halifaxensis HAW-EB4 5904973 YP_001674352.1 CDS Shal_2134 NC_010334.1 2569281 2570870 D PFAM: Amidase; KEGG: pha:PSHAa0910 allophanate hydrolase; amidase 2569281..2570870 Shewanella halifaxensis HAW-EB4 5905258 YP_001674353.1 CDS Shal_2135 NC_010334.1 2571519 2571725 R KEGG: vha:VIBHAR_03040 hypothetical protein; hypothetical protein complement(2571519..2571725) Shewanella halifaxensis HAW-EB4 5905259 YP_001674354.1 CDS Shal_2136 NC_010334.1 2572138 2574375 D KEGG: sal:Sala_0059 hypothetical protein; hypothetical protein 2572138..2574375 Shewanella halifaxensis HAW-EB4 5905317 YP_001674355.1 CDS Shal_2137 NC_010334.1 2575344 2576870 R PFAM: protein of unknown function DUF1302; KEGG: bur:Bcep18194_B1461 protein of unknown function DUF1302; hypothetical protein complement(2575344..2576870) Shewanella halifaxensis HAW-EB4 5905318 YP_001674356.1 CDS Shal_2138 NC_010334.1 2576897 2578282 R PFAM: protein of unknown function DUF1329; KEGG: reu:Reut_A1519 protein of unknown function DUF1329; hypothetical protein complement(2576897..2578282) Shewanella halifaxensis HAW-EB4 5905361 YP_001674357.1 CDS Shal_2139 NC_010334.1 2578678 2579463 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa2151 short chain dehydrogenase; short chain dehydrogenase 2578678..2579463 Shewanella halifaxensis HAW-EB4 5905362 YP_001674358.1 CDS Shal_2140 NC_010334.1 2579472 2579957 D PFAM: MaoC domain protein dehydratase; KEGG: pha:PSHAa2150 MaoC-like deshydratase domain; dehydratase 2579472..2579957 Shewanella halifaxensis HAW-EB4 5905254 YP_001674359.1 CDS Shal_2141 NC_010334.1 2579970 2581175 D KEGG: reu:Reut_A1572 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2579970..2581175 Shewanella halifaxensis HAW-EB4 5905255 YP_001674360.1 CDS Shal_2142 NC_010334.1 2581189 2582037 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_3812 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2581189..2582037 Shewanella halifaxensis HAW-EB4 5905471 YP_001674361.1 CDS Shal_2143 NC_010334.1 2582089 2583747 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: ppf:Pput_1650 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2582089..2583747 Shewanella halifaxensis HAW-EB4 5904647 YP_001674362.1 CDS Shal_2144 NC_010334.1 2583882 2584646 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gme:Gmet_2217 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2583882..2584646 Shewanella halifaxensis HAW-EB4 5904648 YP_001674363.1 CDS Shal_2145 NC_010334.1 2584703 2585098 D PFAM: nuclear transport factor 2; KEGG: swi:Swit_3295 nuclear transport factor 2; nuclear transport factor 2 2584703..2585098 Shewanella halifaxensis HAW-EB4 5904680 YP_001674364.1 CDS Shal_2146 NC_010334.1 2585127 2586335 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa2131 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2585127..2586335 Shewanella halifaxensis HAW-EB4 5904681 YP_001674365.1 CDS Shal_2147 NC_010334.1 2586332 2587522 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa2130 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2586332..2587522 Shewanella halifaxensis HAW-EB4 5905506 YP_001674366.1 CDS Shal_2148 NC_010334.1 2587657 2590833 R PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_1929 acriflavin resistance protein; acriflavin resistance protein complement(2587657..2590833) Shewanella halifaxensis HAW-EB4 5905507 YP_001674367.1 CDS Shal_2149 NC_010334.1 2590837 2592030 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfr:Sfri_1930 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2590837..2592030) Shewanella halifaxensis HAW-EB4 5905337 YP_001674368.1 CDS Shal_2150 NC_010334.1 2592531 2592866 R PFAM: SEC-C motif domain protein; KEGG: shw:Sputw3181_1017 sec-C motif domain protein; SecC motif-containing protein complement(2592531..2592866) Shewanella halifaxensis HAW-EB4 5905338 YP_001674369.1 CDS Shal_2151 NC_010334.1 2593204 2594124 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2593204..2594124 Shewanella halifaxensis HAW-EB4 5905492 YP_001674370.1 CDS Shal_2152 NC_010334.1 2594227 2596611 R KEGG: ppr:PBPRB0364 putative ATP-dependent protease La-relatedprotein; putative ATP-dependent protease La-likeprotein complement(2594227..2596611) Shewanella halifaxensis HAW-EB4 5905493 YP_001674371.1 CDS Shal_2153 NC_010334.1 2596963 2599602 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: vfi:VFA0990 trimethylamine-N-oxide reductase; molybdopterin oxidoreductase complement(2596963..2599602) Shewanella halifaxensis HAW-EB4 5905682 YP_001674372.1 CDS Shal_2154 NC_010334.1 2599896 2602265 R PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease; peptidase U32 complement(2599896..2602265) Shewanella halifaxensis HAW-EB4 5905683 YP_001674373.1 CDS Shal_2155 NC_010334.1 2602650 2603114 R SMART: Rhodanese domain protein; KEGG: aae:aq_1599 hypothetical protein; rhodanese domain-containing protein complement(2602650..2603114) Shewanella halifaxensis HAW-EB4 5905709 YP_001674374.1 CDS Shal_2156 NC_010334.1 2603934 2604980 D KEGG: ppr:PBPRB1179 hypothetical protein; hypothetical protein 2603934..2604980 Shewanella halifaxensis HAW-EB4 5905710 YP_001674375.1 CDS Shal_2157 NC_010334.1 2605174 2605812 D KEGG: sfr:Sfri_3117 hypothetical protein; hypothetical protein 2605174..2605812 Shewanella halifaxensis HAW-EB4 5905703 YP_001674376.1 CDS Shal_2158 NC_010334.1 2606163 2607026 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA complement(2606163..2607026) Shewanella halifaxensis HAW-EB4 5905704 YP_001674377.1 CDS Shal_2159 NC_010334.1 2607619 2608464 D PFAM: beta-lactamase domain protein; KEGG: son:SO_A0149 hypothetical protein; beta-lactamase domain-containing protein 2607619..2608464 Shewanella halifaxensis HAW-EB4 5905834 YP_001674378.1 CDS Shal_2160 NC_010334.1 2608747 2610042 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(2608747..2610042) Shewanella halifaxensis HAW-EB4 5905835 YP_001674379.1 CDS codB NC_010334.1 2610053 2611318 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: vha:VIBHAR_05320 hypothetical protein; cytosine permease complement(2610053..2611318) Shewanella halifaxensis HAW-EB4 5905797 YP_001674380.1 CDS Shal_2162 NC_010334.1 2611705 2612061 D KEGG: vpa:VPA0396 putative outer membrane lipoprotein; putative outer membrane lipoprotein 2611705..2612061 Shewanella halifaxensis HAW-EB4 5905642 YP_001674381.1 CDS Shal_2163 NC_010334.1 2612071 2613612 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: vvu:VV2_0169 permease of the major facilitator superfamily; EmrB/QacA family drug resistance transporter complement(2612071..2613612) Shewanella halifaxensis HAW-EB4 5905643 YP_001674382.1 CDS Shal_2164 NC_010334.1 2613614 2614657 R PFAM: secretion protein HlyD family protein; KEGG: vpa:VPA0097 putative secretion protein; secretion protein HlyD family protein complement(2613614..2614657) Shewanella halifaxensis HAW-EB4 5905742 YP_001674383.1 CDS Shal_2165 NC_010334.1 2614864 2615016 R KEGG: vfi:VF1267 DNA polymerase V; hypothetical protein complement(2614864..2615016) Shewanella halifaxensis HAW-EB4 5905743 YP_001674384.1 CDS Shal_2166 NC_010334.1 2615260 2616486 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2037 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2615260..2616486 Shewanella halifaxensis HAW-EB4 5905813 YP_001674385.1 CDS Shal_2167 NC_010334.1 2616486 2619620 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2036 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2616486..2619620 Shewanella halifaxensis HAW-EB4 5905814 YP_001674386.1 CDS Shal_2168 NC_010334.1 2619613 2621151 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_2035 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 2619613..2621151 Shewanella halifaxensis HAW-EB4 5905803 YP_001674387.1 CDS Shal_2169 NC_010334.1 2621348 2622601 R PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(2621348..2622601) Shewanella halifaxensis HAW-EB4 5905804 YP_001674388.1 CDS Shal_2170 NC_010334.1 2622604 2623011 R PFAM: peptidase S24 and S26 domain protein; KEGG: sfr:Sfri_1963 putative prophage repressor; peptidase S24/S26 domain-containing protein complement(2622604..2623011) Shewanella halifaxensis HAW-EB4 5906995 YP_001674389.1 CDS Shal_2171 NC_010334.1 2623416 2624720 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vfi:VFA0342 sensory transduction protein kinase; diguanylate cyclase 2623416..2624720 Shewanella halifaxensis HAW-EB4 5906996 YP_001674390.1 CDS Shal_2172 NC_010334.1 2624863 2625066 D KEGG: ppr:PBPRB0729 hypothetical protein; hypothetical protein 2624863..2625066 Shewanella halifaxensis HAW-EB4 5906926 YP_001674391.1 CDS Shal_2173 NC_010334.1 2625612 2625998 D KEGG: cvi:CV_1450 hypothetical protein; hypothetical protein 2625612..2625998 Shewanella halifaxensis HAW-EB4 5906927 YP_001674392.1 CDS Shal_2174 NC_010334.1 2627402 2628274 D KEGG: saz:Sama_0739 hypothetical protein; hypothetical protein 2627402..2628274 Shewanella halifaxensis HAW-EB4 5906578 YP_001674393.1 CDS Shal_2175 NC_010334.1 2628806 2629516 D hypothetical protein 2628806..2629516 Shewanella halifaxensis HAW-EB4 5906579 YP_001674394.1 CDS Shal_2176 NC_010334.1 2629510 2631786 D PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: pin:Ping_3112 ATP-dependent RNA helicase, DEAD box family protein; helicase domain-containing protein 2629510..2631786 Shewanella halifaxensis HAW-EB4 5905930 YP_001674395.1 CDS Shal_2177 NC_010334.1 2632752 2633318 D hypothetical protein 2632752..2633318 Shewanella halifaxensis HAW-EB4 5905931 YP_001674396.1 CDS Shal_2178 NC_010334.1 2633378 2634127 D KEGG: ppu:PP_2292 hypothetical protein; hypothetical protein 2633378..2634127 Shewanella halifaxensis HAW-EB4 5907036 YP_001674397.1 CDS Shal_2179 NC_010334.1 2634252 2635220 D KEGG: son:SO_1888 hypothetical protein; hypothetical protein 2634252..2635220 Shewanella halifaxensis HAW-EB4 5907037 YP_001674398.1 CDS Shal_2180 NC_010334.1 2635323 2636639 D KEGG: cch:Cag_1860 hypothetical protein; hypothetical protein 2635323..2636639 Shewanella halifaxensis HAW-EB4 5907025 YP_001674399.1 CDS Shal_2181 NC_010334.1 2637326 2640373 D PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_3844 type III restriction enzyme, res subunit; type III restriction protein res subunit 2637326..2640373 Shewanella halifaxensis HAW-EB4 5906962 YP_001674400.1 CDS Shal_2182 NC_010334.1 2640679 2641431 R PFAM: Endonuclease I; KEGG: ppr:PBPRC0029 putative endonuclease I; deoxyribonuclease I complement(2640679..2641431) Shewanella halifaxensis HAW-EB4 5906963 YP_001674401.1 CDS Shal_2183 NC_010334.1 2641539 2642792 R PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(2641539..2642792) Shewanella halifaxensis HAW-EB4 5906943 YP_001674402.1 CDS Shal_2184 NC_010334.1 2642795 2643202 R PFAM: peptidase S24 and S26 domain protein; KEGG: sfr:Sfri_1963 putative prophage repressor; peptidase S24/S26 domain-containing protein complement(2642795..2643202) Shewanella halifaxensis HAW-EB4 5906944 YP_001674403.1 CDS Shal_2185 NC_010334.1 2643546 2645762 D KEGG: vpa:VPA1255 hypothetical protein; hypothetical protein 2643546..2645762 Shewanella halifaxensis HAW-EB4 5906791 YP_001674404.1 CDS Shal_2186 NC_010334.1 2645936 2646739 D PFAM: FRG domain protein; KEGG: pla:Plav_0332 FRG domain protein; FRG domain-containing protein 2645936..2646739 Shewanella halifaxensis HAW-EB4 5906792 YP_001674405.1 CDS Shal_2187 NC_010334.1 2646782 2647279 D hypothetical protein 2646782..2647279 Shewanella halifaxensis HAW-EB4 5906604 YP_001674406.1 CDS Shal_2188 NC_010334.1 2647720 2648910 R KEGG: vpa:VP2902 hypothetical protein; hypothetical protein complement(2647720..2648910) Shewanella halifaxensis HAW-EB4 5906605 YP_001674407.1 CDS Shal_2189 NC_010334.1 2649018 2650208 D KEGG: vpa:VP2901 hypothetical protein; hypothetical protein 2649018..2650208 Shewanella halifaxensis HAW-EB4 5906542 YP_001674408.1 CDS Shal_2190 NC_010334.1 2650321 2650764 R KEGG: pcr:Pcryo_1366 hypothetical protein; hypothetical protein complement(2650321..2650764) Shewanella halifaxensis HAW-EB4 5906543 YP_001674409.1 CDS Shal_2191 NC_010334.1 2650866 2653292 R KEGG: pcr:Pcryo_1367 hypothetical protein; hypothetical protein complement(2650866..2653292) Shewanella halifaxensis HAW-EB4 5906378 YP_001674410.1 CDS Shal_2192 NC_010334.1 2653289 2654836 R PFAM: integrase family protein; KEGG: pcr:Pcryo_1368 phage integrase; integrase family protein complement(2653289..2654836) Shewanella halifaxensis HAW-EB4 5906379 YP_001674411.1 CDS Shal_2193 NC_010334.1 2654833 2656185 R KEGG: pcr:Pcryo_1369 phage integrase; phage integrase complement(2654833..2656185) Shewanella halifaxensis HAW-EB4 5902795 YP_001674412.1 CDS Shal_2194 NC_010334.1 2658843 2660135 R PFAM: integrase family protein; KEGG: sbm:Shew185_2174 phage integrase family protein; integrase family protein complement(2658843..2660135) Shewanella halifaxensis HAW-EB4 5902796 YP_001674413.1 CDS Shal_2195 NC_010334.1 2660222 2660467 R KEGG: sfr:Sfri_2008 hypothetical protein; hypothetical protein complement(2660222..2660467) Shewanella halifaxensis HAW-EB4 5906154 YP_001674414.1 CDS Shal_2196 NC_010334.1 2660579 2661043 R KEGG: son:SO_2365 hypothetical protein; hypothetical protein complement(2660579..2661043) Shewanella halifaxensis HAW-EB4 5906155 YP_001674415.1 CDS Shal_2197 NC_010334.1 2661307 2662743 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2661307..2662743 Shewanella halifaxensis HAW-EB4 5906136 YP_001674416.1 CDS Shal_2198 NC_010334.1 2662756 2663370 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2662756..2663370 Shewanella halifaxensis HAW-EB4 5906137 YP_001674417.1 CDS Shal_2199 NC_010334.1 2663382 2663558 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: sdn:Sden_1849 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2663382..2663558 Shewanella halifaxensis HAW-EB4 5907038 YP_001674418.1 CDS Shal_2200 NC_010334.1 2663558 2664514 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: slo:Shew_1988 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2663558..2664514 Shewanella halifaxensis HAW-EB4 5907023 YP_001674419.1 CDS Shal_2201 NC_010334.1 2664663 2665142 D KEGG: slo:Shew_1989 hypothetical protein; hypothetical protein 2664663..2665142 Shewanella halifaxensis HAW-EB4 5907024 YP_001674420.1 CDS Shal_2202 NC_010334.1 2665236 2667620 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: shm:Shewmr7_1964 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2665236..2667620 Shewanella halifaxensis HAW-EB4 5906883 YP_001674421.1 CDS Shal_2203 NC_010334.1 2667617 2667889 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: slo:Shew_1991 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2667617..2667889 Shewanella halifaxensis HAW-EB4 5906884 YP_001674422.1 CDS Shal_2204 NC_010334.1 2667892 2668584 D KEGG: sbl:Sbal_4494 hypothetical protein; hypothetical protein 2667892..2668584 Shewanella halifaxensis HAW-EB4 5906420 YP_001674423.1 CDS Shal_2205 NC_010334.1 2668642 2669394 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2668642..2669394 Shewanella halifaxensis HAW-EB4 5906421 YP_001674424.1 CDS Shal_2206 NC_010334.1 2669486 2670418 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2669486..2670418 Shewanella halifaxensis HAW-EB4 5906380 YP_001674425.1 CDS Shal_2207 NC_010334.1 2670499 2671434 D PFAM: PP-loop domain protein; KEGG: shw:Sputw3181_2056 PP-loop domain protein; PP-loop domain-containing protein 2670499..2671434 Shewanella halifaxensis HAW-EB4 5906381 YP_001674426.1 CDS Shal_2208 NC_010334.1 2671498 2672121 R KEGG: slo:Shew_1996 hypothetical protein; hypothetical protein complement(2671498..2672121) Shewanella halifaxensis HAW-EB4 5906262 YP_001674427.1 CDS Shal_2209 NC_010334.1 2672099 2672926 R KEGG: slo:Shew_1997 Bax protein, putative; Bax protein complement(2672099..2672926) Shewanella halifaxensis HAW-EB4 5906263 YP_001674428.1 CDS Shal_2210 NC_010334.1 2673087 2673998 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: slo:Shew_1998 protein of unknown function UPF0052 and CofD; hypothetical protein 2673087..2673998 Shewanella halifaxensis HAW-EB4 5906186 YP_001674429.1 CDS Shal_2211 NC_010334.1 2674253 2674771 D PFAM: HPP family protein?; KEGG: vpa:VPA1561 hypothetical protein; HPP family protein 2674253..2674771 Shewanella halifaxensis HAW-EB4 5906187 YP_001674430.1 CDS Shal_2212 NC_010334.1 2674889 2676082 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2674889..2676082) Shewanella halifaxensis HAW-EB4 5906175 YP_001674431.1 CDS Shal_2213 NC_010334.1 2676410 2677696 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2676410..2677696) Shewanella halifaxensis HAW-EB4 5906176 YP_001674432.1 CDS Shal_2214 NC_010334.1 2677715 2678089 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2677715..2678089) Shewanella halifaxensis HAW-EB4 5906103 YP_001674433.1 CDS Shal_2215 NC_010334.1 2678082 2679413 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: slo:Shew_2022 AAA ATPase, central domain protein; recombination factor protein RarA complement(2678082..2679413) Shewanella halifaxensis HAW-EB4 5906104 YP_001674434.1 CDS Shal_2216 NC_010334.1 2679423 2680049 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: spc:Sputcn32_2010 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(2679423..2680049) Shewanella halifaxensis HAW-EB4 5905986 YP_001674435.1 CDS Shal_2217 NC_010334.1 2680124 2682706 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: slo:Shew_2024 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(2680124..2682706) Shewanella halifaxensis HAW-EB4 5905987 YP_001674436.1 CDS Shal_2218 NC_010334.1 2682896 2683399 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(2682896..2683399) Shewanella halifaxensis HAW-EB4 5905169 YP_001674437.1 CDS Shal_2219 NC_010334.1 2683580 2684695 D TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: slo:Shew_2026 alanine dehydrogenase; alanine dehydrogenase 2683580..2684695 Shewanella halifaxensis HAW-EB4 5904974 YP_001674438.1 CDS Shal_2220 NC_010334.1 2685041 2685724 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: saz:Sama_1718 response regulator receiver protein; two component transcriptional regulator complement(2685041..2685724) Shewanella halifaxensis HAW-EB4 5904975 YP_001674439.1 CDS Shal_2221 NC_010334.1 2685930 2687702 R PFAM: protein of unknown function DUF885; KEGG: slo:Shew_1935 protein of unknown function DUF885; hypothetical protein complement(2685930..2687702) Shewanella halifaxensis HAW-EB4 5904629 YP_001674440.1 CDS Shal_2222 NC_010334.1 2687898 2689847 R KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(2687898..2689847) Shewanella halifaxensis HAW-EB4 5904630 YP_001674441.1 CDS Shal_2223 NC_010334.1 2689906 2690787 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_1933 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(2689906..2690787) Shewanella halifaxensis HAW-EB4 5904563 YP_001674442.1 CDS cls NC_010334.1 2690957 2692414 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2690957..2692414 Shewanella halifaxensis HAW-EB4 5904564 YP_001674443.1 CDS Shal_2225 NC_010334.1 2692570 2692764 D hypothetical protein 2692570..2692764 Shewanella halifaxensis HAW-EB4 5903426 YP_001674444.1 CDS ushA NC_010334.1 2693235 2694971 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2693235..2694971) Shewanella halifaxensis HAW-EB4 5903427 YP_001674445.1 CDS Shal_2227 NC_010334.1 2695069 2697138 R PFAM: Endonuclease I; KEGG: pat:Patl_1033 endonuclease I; endonuclease I complement(2695069..2697138) Shewanella halifaxensis HAW-EB4 5906798 YP_001674446.1 CDS Shal_2228 NC_010334.1 2697232 2700372 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vvy:VV3056 predicted extracellular nuclease; endonuclease/exonuclease/phosphatase complement(2697232..2700372) Shewanella halifaxensis HAW-EB4 5906799 YP_001674447.1 CDS Shal_2229 NC_010334.1 2700414 2701466 R KEGG: vvy:VV3057 hypothetical protein; hypothetical protein complement(2700414..2701466) Shewanella halifaxensis HAW-EB4 5903846 YP_001674448.1 CDS Shal_2230 NC_010334.1 2703106 2705100 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: sbm:Shew185_1950 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2703106..2705100) Shewanella halifaxensis HAW-EB4 5906193 YP_001674449.1 CDS Shal_2231 NC_010334.1 2705291 2706358 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2705291..2706358) Shewanella halifaxensis HAW-EB4 5905025 YP_001674450.1 CDS Shal_2232 NC_010334.1 2706488 2708128 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: spc:Sputcn32_1887 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase complement(2706488..2708128) Shewanella halifaxensis HAW-EB4 5905026 YP_001674451.1 CDS Shal_2233 NC_010334.1 2708138 2709115 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbl:Sbal_4507 hypothetical protein; transketolase central region complement(2708138..2709115) Shewanella halifaxensis HAW-EB4 5904497 YP_001674452.1 CDS Shal_2234 NC_010334.1 2709119 2710297 R PFAM: dehydrogenase E1 component; KEGG: slo:Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase complement(2709119..2710297) Shewanella halifaxensis HAW-EB4 5904498 YP_001674453.1 CDS Shal_2235 NC_010334.1 2710480 2711580 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2710480..2711580) Shewanella halifaxensis HAW-EB4 5905107 YP_001674454.1 CDS Shal_2236 NC_010334.1 2711798 2712277 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: saz:Sama_1707 protein-methionine-S-oxide reductase; peptide methionine sulfoxide reductase 2711798..2712277 Shewanella halifaxensis HAW-EB4 5905108 YP_001674455.1 CDS Shal_2237 NC_010334.1 2713279 2713722 R KEGG: sfr:Sfri_2052 hypothetical protein; hypothetical protein complement(2713279..2713722) Shewanella halifaxensis HAW-EB4 5904997 YP_001674456.1 CDS Shal_2238 NC_010334.1 2714411 2716051 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2714411..2716051) Shewanella halifaxensis HAW-EB4 5905955 YP_001674457.1 CDS Shal_2239 NC_010334.1 2716127 2716747 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(2716127..2716747) Shewanella halifaxensis HAW-EB4 5905956 YP_001674458.1 CDS Shal_2240 NC_010334.1 2716965 2717723 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2716965..2717723 Shewanella halifaxensis HAW-EB4 5905540 YP_001674459.1 CDS Shal_2241 NC_010334.1 2717822 2718043 D KEGG: slo:Shew_1919 hypothetical protein; hypothetical protein 2717822..2718043 Shewanella halifaxensis HAW-EB4 5905541 YP_001674460.1 CDS Shal_2242 NC_010334.1 2718055 2718327 D KEGG: slo:Shew_1918 CopG domain protein DNA-binding domain protein; LexA regulated protein 2718055..2718327 Shewanella halifaxensis HAW-EB4 5905228 YP_001674461.1 CDS Shal_2243 NC_010334.1 2718385 2718912 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2718385..2718912 Shewanella halifaxensis HAW-EB4 5905229 YP_001674462.1 CDS Shal_2244 NC_010334.1 2719062 2720255 D KEGG: shm:Shewmr7_1938 hypothetical protein; hypothetical protein 2719062..2720255 Shewanella halifaxensis HAW-EB4 5905960 YP_001674463.1 CDS Shal_2245 NC_010334.1 2720300 2720860 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2720300..2720860 Shewanella halifaxensis HAW-EB4 5905961 YP_001674464.1 CDS Shal_2246 NC_010334.1 2721215 2722429 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2721215..2722429 Shewanella halifaxensis HAW-EB4 5906867 YP_001674465.1 CDS Shal_2247 NC_010334.1 2722644 2723231 D KEGG: son:SO_2484 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; hypothetical protein 2722644..2723231 Shewanella halifaxensis HAW-EB4 5906868 YP_001674466.1 CDS Shal_2248 NC_010334.1 2723252 2724586 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2723252..2724586 Shewanella halifaxensis HAW-EB4 5905848 YP_001674467.1 CDS Shal_2249 NC_010334.1 2724737 2725360 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: slo:Shew_1911 multiple antibiotic resistance (MarC)-related protein; hypothetical protein complement(2724737..2725360) Shewanella halifaxensis HAW-EB4 5905849 YP_001674468.1 CDS Shal_2250 NC_010334.1 2725691 2728306 D PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: slo:Shew_1910 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2725691..2728306 Shewanella halifaxensis HAW-EB4 5904194 YP_001674469.1 CDS Shal_2251 NC_010334.1 2728391 2730565 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(2728391..2730565) Shewanella halifaxensis HAW-EB4 5904195 YP_001674470.1 CDS Shal_2252 NC_010334.1 2730808 2731752 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_3138 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(2730808..2731752) Shewanella halifaxensis HAW-EB4 5903934 YP_001674471.1 CDS Shal_2253 NC_010334.1 2731863 2733446 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 2731863..2733446 Shewanella halifaxensis HAW-EB4 5903935 YP_001674472.1 CDS Shal_2254 NC_010334.1 2733919 2734500 D KEGG: sdn:Sden_3340 methylation; hypothetical protein 2733919..2734500 Shewanella halifaxensis HAW-EB4 5904174 YP_001674473.1 CDS Shal_2255 NC_010334.1 2734667 2736718 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_1905 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(2734667..2736718) Shewanella halifaxensis HAW-EB4 5904175 YP_001674474.1 CDS Shal_2256 NC_010334.1 2736908 2738428 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: slo:Shew_1904 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(2736908..2738428) Shewanella halifaxensis HAW-EB4 5903787 YP_001674475.1 CDS Shal_2257 NC_010334.1 2738607 2740244 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: shw:Sputw3181_2219 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I 2738607..2740244 Shewanella halifaxensis HAW-EB4 5903980 YP_001674476.1 CDS Shal_2258 NC_010334.1 2740296 2740877 D PFAM: NUDIX hydrolase; KEGG: son:SO_2220 MutT/nudix family protein; NUDIX hydrolase 2740296..2740877 Shewanella halifaxensis HAW-EB4 5903981 YP_001674477.1 CDS Shal_2259 NC_010334.1 2740982 2741317 R KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein complement(2740982..2741317) Shewanella halifaxensis HAW-EB4 5903506 YP_001674478.1 CDS asnC NC_010334.1 2741469 2742869 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2741469..2742869 Shewanella halifaxensis HAW-EB4 5903507 YP_001674479.1 CDS Shal_2261 NC_010334.1 2743376 2744512 D KEGG: slo:Shew_1765 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 2743376..2744512 Shewanella halifaxensis HAW-EB4 5903575 YP_001674480.1 CDS Shal_2262 NC_010334.1 2744515 2746218 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: slo:Shew_1764 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 2744515..2746218 Shewanella halifaxensis HAW-EB4 5903576 YP_001674481.1 CDS Shal_2263 NC_010334.1 2746233 2746901 D TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: slo:Shew_1763 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2746233..2746901 Shewanella halifaxensis HAW-EB4 5905567 YP_001674482.1 CDS Shal_2264 NC_010334.1 2746911 2747468 D TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: slo:Shew_1762 hydrogenase expression/formation protein; hydrogenase maturation protease 2746911..2747468 Shewanella halifaxensis HAW-EB4 5905568 YP_001674483.1 CDS Shal_2265 NC_010334.1 2747455 2749236 D KEGG: slo:Shew_1761 hypothetical protein; hypothetical protein 2747455..2749236 Shewanella halifaxensis HAW-EB4 5906123 YP_001674484.1 CDS Shal_2266 NC_010334.1 2749250 2751637 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: spc:Sputcn32_2093 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2749250..2751637 Shewanella halifaxensis HAW-EB4 5906124 YP_001674485.1 CDS Shal_2267 NC_010334.1 2751737 2752498 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: shw:Sputw3181_2173 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2751737..2752498 Shewanella halifaxensis HAW-EB4 5906495 YP_001674486.1 CDS Shal_2268 NC_010334.1 2752498 2752746 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: saz:Sama_1672 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2752498..2752746 Shewanella halifaxensis HAW-EB4 5906496 YP_001674487.1 CDS Shal_2269 NC_010334.1 2752746 2753867 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: slo:Shew_1757 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2752746..2753867 Shewanella halifaxensis HAW-EB4 5907002 YP_001674488.1 CDS Shal_2270 NC_010334.1 2753864 2754880 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: slo:Shew_1756 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2753864..2754880 Shewanella halifaxensis HAW-EB4 5907003 YP_001674489.1 CDS Shal_2271 NC_010334.1 2754880 2755227 D PFAM: hydrogenase expression/synthesis HypA; KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 2754880..2755227 Shewanella halifaxensis HAW-EB4 5903880 YP_001674490.1 CDS Shal_2272 NC_010334.1 2755415 2756422 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRB0600 hypothetical protein; hypothetical protein complement(2755415..2756422) Shewanella halifaxensis HAW-EB4 5903881 YP_001674491.1 CDS Shal_2273 NC_010334.1 2756499 2757461 R PFAM: type II secretion system protein; KEGG: ppr:PBPRB0601 hypothetical putative tight adherence TadC-related transmembrane protein; type II secretion system protein complement(2756499..2757461) Shewanella halifaxensis HAW-EB4 5903644 YP_001674492.1 CDS Shal_2274 NC_010334.1 2757463 2758440 R PFAM: type II secretion system protein; KEGG: vpa:VP2411 putative tight adherence TadB-related transmembrane protein; type II secretion system protein complement(2757463..2758440) Shewanella halifaxensis HAW-EB4 5903645 YP_001674493.1 CDS Shal_2275 NC_010334.1 2758452 2759780 R PFAM: type II secretion system protein E; KEGG: ppr:PBPRB0603 putative pilus assembly protein; type II secretion system protein E complement(2758452..2759780) Shewanella halifaxensis HAW-EB4 5903918 YP_001674494.1 CDS Shal_2276 NC_010334.1 2759782 2761008 R KEGG: vvy:VV2654 flp pilus assembly protein, ATPase CpaE; Flp pilus assembly protein ATPase CpaE-like protein complement(2759782..2761008) Shewanella halifaxensis HAW-EB4 5903972 YP_001674495.1 CDS Shal_2277 NC_010334.1 2761101 2761550 R PFAM: TadE family protein; KEGG: ppr:PBPRB0605 hypothetical protein; TadE family protein complement(2761101..2761550) Shewanella halifaxensis HAW-EB4 5903973 YP_001674496.1 CDS Shal_2278 NC_010334.1 2761547 2762026 R PFAM: TadE family protein; KEGG: ppr:PBPRB0606 hypothetical protein; TadE family protein complement(2761547..2762026) Shewanella halifaxensis HAW-EB4 5904110 YP_001674497.1 CDS Shal_2279 NC_010334.1 2762037 2763377 R KEGG: ppr:PBPRB0607 hypothetical protein; hypothetical protein complement(2762037..2763377) Shewanella halifaxensis HAW-EB4 5904111 YP_001674498.1 CDS Shal_2280 NC_010334.1 2763398 2763646 R hypothetical protein complement(2763398..2763646) Shewanella halifaxensis HAW-EB4 5904196 YP_001674499.1 CDS Shal_2281 NC_010334.1 2763724 2765160 R PFAM: type II and III secretion system protein; transport-associated; KEGG: vvy:VV2660 flp pilus assembly protein, secretin CpaC; type II and III secretion system protein complement(2763724..2765160) Shewanella halifaxensis HAW-EB4 5904197 YP_001674500.1 CDS Shal_2282 NC_010334.1 2765209 2766021 R PFAM: SAF domain protein; KEGG: vvu:VV1_1748 flp pilus assembly protein CpaB; SAF domain-containing protein complement(2765209..2766021) Shewanella halifaxensis HAW-EB4 5903561 YP_001674501.1 CDS Shal_2283 NC_010334.1 2766054 2767376 R SMART: AAA ATPase; KEGG: ppr:PBPRB0612 hypothetical protein; ATPase AAA complement(2766054..2767376) Shewanella halifaxensis HAW-EB4 5903562 YP_001674502.1 CDS Shal_2284 NC_010334.1 2767387 2767953 R PFAM: peptidase A24A prepilin type IV; KEGG: rba:RB5170 similar to type IV prepilin peptidase CpaA; peptidase A24A prepilin type IV complement(2767387..2767953) Shewanella halifaxensis HAW-EB4 5903668 YP_001674503.1 CDS Shal_2285 NC_010334.1 2768029 2768226 R hypothetical protein complement(2768029..2768226) Shewanella halifaxensis HAW-EB4 5903669 YP_001674504.1 CDS Shal_2286 NC_010334.1 2768773 2769174 R KEGG: vvy:VV0172 transposase and inactivated derivative; transposase and inactivated derivative complement(2768773..2769174) Shewanella halifaxensis HAW-EB4 5903186 YP_001674505.1 CDS Shal_2287 NC_010334.1 2769167 2770501 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: asa:ASA_1213 hypothetical protein; peptidoglycan-binding domain-containing protein complement(2769167..2770501) Shewanella halifaxensis HAW-EB4 5903187 YP_001674506.1 CDS Shal_2288 NC_010334.1 2771079 2773133 D PFAM: sulfatase; KEGG: lpp:lpp2806 hypothetical protein; sulfatase 2771079..2773133 Shewanella halifaxensis HAW-EB4 5904526 YP_001674507.1 CDS Shal_2289 NC_010334.1 2773217 2775010 D PFAM: glycosyl transferase family 39; glycosyl transferase family protein 2773217..2775010 Shewanella halifaxensis HAW-EB4 5904527 YP_001674508.1 CDS Shal_2290 NC_010334.1 2775048 2776079 D PFAM: glycosyl transferase family 2; KEGG: rru:Rru_A2124 glycosyl transferase, family 2; glycosyl transferase family protein 2775048..2776079 Shewanella halifaxensis HAW-EB4 5904860 YP_001674509.1 CDS Shal_2291 NC_010334.1 2776256 2776972 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_3127 methyltransferase type 11; type 11 methyltransferase 2776256..2776972 Shewanella halifaxensis HAW-EB4 5904861 YP_001674510.1 CDS Shal_2292 NC_010334.1 2776953 2778044 D hypothetical protein 2776953..2778044 Shewanella halifaxensis HAW-EB4 5904897 YP_001674511.1 CDS Shal_2293 NC_010334.1 2778041 2779093 D PFAM: glycosyl transferase family 9; KEGG: wsu:WS1450 ADP-heptose-LPS heptosyltransferase II (RfaF); glycosyl transferase family protein 2778041..2779093 Shewanella halifaxensis HAW-EB4 5904898 YP_001674512.1 CDS Shal_2294 NC_010334.1 2779090 2780046 D KEGG: rca:Rcas_4270 hypothetical protein; hypothetical protein 2779090..2780046 Shewanella halifaxensis HAW-EB4 5905082 YP_001674513.1 CDS Shal_2295 NC_010334.1 2780152 2781366 R PFAM: Fmu (Sun) domain protein; KEGG: son:SO_2215 sun protein, putative; Fmu (Sun) domain-containing protein complement(2780152..2781366) Shewanella halifaxensis HAW-EB4 5904942 YP_001674514.1 CDS Shal_2296 NC_010334.1 2781498 2782013 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(2781498..2782013) Shewanella halifaxensis HAW-EB4 5904943 YP_001674515.1 CDS Shal_2297 NC_010334.1 2782164 2783699 D PFAM: helix-turn-helix domain protein; KEGG: sbm:Shew185_4294 transcriptional regulator, XRE family; XRE family transcriptional regulator 2782164..2783699 Shewanella halifaxensis HAW-EB4 5903422 YP_001674516.1 CDS Shal_2298 NC_010334.1 2783810 2784082 R hypothetical protein complement(2783810..2784082) Shewanella halifaxensis HAW-EB4 5903423 YP_001674517.1 CDS Shal_2299 NC_010334.1 2784309 2784806 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: vfi:VF0656 transcription elongation factor; GreA/GreB family elongation factor complement(2784309..2784806) Shewanella halifaxensis HAW-EB4 5905433 YP_001674518.1 CDS Shal_2300 NC_010334.1 2785123 2785995 D KEGG: rme:Rmet_1758 hypothetical protein; hypothetical protein 2785123..2785995 Shewanella halifaxensis HAW-EB4 5905434 YP_001674519.1 CDS Shal_2301 NC_010334.1 2786103 2787248 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: sbl:Sbal_2354 cupin 4 family protein; cupin 4 family protein complement(2786103..2787248) Shewanella halifaxensis HAW-EB4 5905561 YP_001674520.1 CDS Shal_2302 NC_010334.1 2787445 2788086 D KEGG: ppr:PBPRB1229 putative DNA polymerase III; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2787445..2788086 Shewanella halifaxensis HAW-EB4 5905562 YP_001674521.1 CDS Shal_2303 NC_010334.1 2788315 2789010 R KEGG: shn:Shewana3_2253 hypothetical protein; hypothetical protein complement(2788315..2789010) Shewanella halifaxensis HAW-EB4 5906991 YP_001674522.1 CDS Shal_2304 NC_010334.1 2789399 2791039 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: slo:Shew_1868 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2789399..2791039 Shewanella halifaxensis HAW-EB4 5906992 YP_001674523.1 CDS Shal_2305 NC_010334.1 2791142 2791528 D KEGG: slo:Shew_1867 hypothetical protein; hypothetical protein 2791142..2791528 Shewanella halifaxensis HAW-EB4 5906817 YP_001674524.1 CDS Shal_2306 NC_010334.1 2791600 2791857 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shn:Shewana3_2256 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr 2791600..2791857 Shewanella halifaxensis HAW-EB4 5906818 YP_001674525.1 CDS Shal_2307 NC_010334.1 2791867 2793570 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: son:SO_2237 phosphotransferase system, enzyme I; phosphoenolpyruvate-protein phosphotransferase 2791867..2793570 Shewanella halifaxensis HAW-EB4 5906690 YP_001674526.1 CDS Shal_2308 NC_010334.1 2793632 2794141 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2793632..2794141 Shewanella halifaxensis HAW-EB4 5906691 YP_001674527.1 CDS Shal_2309 NC_010334.1 2794269 2794658 D PFAM: arsenate reductase and related; KEGG: shw:Sputw3181_1889 arsenate reductase; arsenate reductase-like protein 2794269..2794658 Shewanella halifaxensis HAW-EB4 5906241 YP_001674528.1 CDS Shal_2310 NC_010334.1 2794655 2795800 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2794655..2795800 Shewanella halifaxensis HAW-EB4 5906242 YP_001674529.1 CDS Shal_2311 NC_010334.1 2795791 2796492 D PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sfr:Sfri_1764 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 2795791..2796492 Shewanella halifaxensis HAW-EB4 5906227 YP_001674530.1 CDS Shal_2312 NC_010334.1 2796521 2797369 D PFAM: alpha/beta hydrolase fold; KEGG: shw:Sputw3181_1886 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2796521..2797369 Shewanella halifaxensis HAW-EB4 5906228 YP_001674531.1 CDS Shal_2313 NC_010334.1 2797620 2798234 D PFAM: carbonic anhydrase; KEGG: slo:Shew_1859 carbonate dehydratase; carbonate dehydratase 2797620..2798234 Shewanella halifaxensis HAW-EB4 5906071 YP_001674532.1 CDS Shal_2314 NC_010334.1 2798436 2799620 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2798436..2799620 Shewanella halifaxensis HAW-EB4 5904717 YP_001674533.1 CDS Shal_2315 NC_010334.1 2799701 2800771 D PFAM: iron-containing alcohol dehydrogenase; KEGG: slo:Shew_1857 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2799701..2800771 Shewanella halifaxensis HAW-EB4 5904718 YP_001674534.1 CDS Shal_2316 NC_010334.1 2800840 2801577 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2800840..2801577 Shewanella halifaxensis HAW-EB4 5906584 YP_001674535.1 CDS Shal_2317 NC_010334.1 2801591 2801824 D KEGG: slo:Shew_1855 hypothetical protein; hypothetical protein 2801591..2801824 Shewanella halifaxensis HAW-EB4 5906585 YP_001674536.1 CDS Shal_2318 NC_010334.1 2801972 2805064 R PFAM: acriflavin resistance protein; KEGG: slo:Shew_1852 acriflavin resistance protein; acriflavin resistance protein complement(2801972..2805064) Shewanella halifaxensis HAW-EB4 5905170 YP_001674537.1 CDS Shal_2319 NC_010334.1 2805061 2806140 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2805061..2806140) Shewanella halifaxensis HAW-EB4 5905171 YP_001674538.1 CDS Shal_2320 NC_010334.1 2806322 2807419 R PFAM: NlpBDapX family lipoprotein; KEGG: slo:Shew_1849 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein complement(2806322..2807419) Shewanella halifaxensis HAW-EB4 5906847 YP_001674539.1 CDS Shal_2321 NC_010334.1 2807423 2808307 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2807423..2808307) Shewanella halifaxensis HAW-EB4 5906848 YP_001674540.1 CDS Shal_2322 NC_010334.1 2808547 2809083 D PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_1847 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 2808547..2809083 Shewanella halifaxensis HAW-EB4 5903381 YP_001674541.1 CDS Shal_2323 NC_010334.1 2809093 2809575 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shw:Sputw3181_2325 redoxin domain protein; alkyl hydroperoxide reductase 2809093..2809575 Shewanella halifaxensis HAW-EB4 5903382 YP_001674542.1 CDS Shal_2324 NC_010334.1 2809660 2810274 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1845 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(2809660..2810274) Shewanella halifaxensis HAW-EB4 5903218 YP_001674543.1 CDS Shal_2325 NC_010334.1 2810404 2811294 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2810404..2811294 Shewanella halifaxensis HAW-EB4 5903219 YP_001674544.1 CDS Shal_2326 NC_010334.1 2811356 2812477 R PFAM: protein of unknown function UPF0118; KEGG: slo:Shew_1843 protein of unknown function UPF0118; hypothetical protein complement(2811356..2812477) Shewanella halifaxensis HAW-EB4 5903893 YP_001674545.1 CDS Shal_2327 NC_010334.1 2812568 2812783 R PFAM: SirA family protein; KEGG: sdn:Sden_1648 hypothetical protein; SirA family protein complement(2812568..2812783) Shewanella halifaxensis HAW-EB4 5903894 YP_001674546.1 CDS Shal_2328 NC_010334.1 2812895 2814352 D PFAM: peptidase M48 Ste24p; SMART: Tetratricopeptide domain protein; KEGG: sbm:Shew185_1783 peptidase M48 Ste24p; peptidase M48 Ste24p 2812895..2814352 Shewanella halifaxensis HAW-EB4 5903341 YP_001674547.1 CDS Shal_2329 NC_010334.1 2814429 2814779 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: spc:Sputcn32_1694 arsenate reductase; arsenate reductase 2814429..2814779 Shewanella halifaxensis HAW-EB4 5903342 YP_001674548.1 CDS Shal_2330 NC_010334.1 2814792 2815160 D KEGG: shm:Shewmr7_2421 hypothetical protein; hypothetical protein 2814792..2815160 Shewanella halifaxensis HAW-EB4 5903356 YP_001674549.1 CDS Shal_2331 NC_010334.1 2815403 2817340 D KEGG: sbm:Shew185_1780 hypothetical protein; hypothetical protein 2815403..2817340 Shewanella halifaxensis HAW-EB4 5903357 YP_001674550.1 CDS Shal_2332 NC_010334.1 2817420 2818130 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2817420..2818130) Shewanella halifaxensis HAW-EB4 5903389 YP_001674551.1 CDS Shal_2333 NC_010334.1 2818204 2819316 R KEGG: slo:Shew_1837 hypothetical protein; hypothetical protein complement(2818204..2819316) Shewanella halifaxensis HAW-EB4 5903390 YP_001674552.1 CDS Shal_2334 NC_010334.1 2819493 2820749 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: slo:Shew_1836 uracil-xanthine permease; uracil-xanthine permease 2819493..2820749 Shewanella halifaxensis HAW-EB4 5903271 YP_001674553.1 CDS Shal_2335 NC_010334.1 2820872 2821213 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sfr:Sfri_1748 glutaredoxin-like protein; glutaredoxin-like protein complement(2820872..2821213) Shewanella halifaxensis HAW-EB4 5903272 YP_001674554.1 CDS Shal_2336 NC_010334.1 2821439 2822023 D PFAM: manganese and iron superoxide dismutase; KEGG: spc:Sputcn32_1687 superoxide dismutase; superoxide dismutase 2821439..2822023 Shewanella halifaxensis HAW-EB4 5904753 YP_001674555.1 CDS Shal_2337 NC_010334.1 2822253 2824187 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: slo:Shew_1833 putative serine protein kinase, PrkA; putative serine protein kinase PrkA 2822253..2824187 Shewanella halifaxensis HAW-EB4 5904754 YP_001674556.1 CDS Shal_2338 NC_010334.1 2824237 2825505 D PFAM: protein of unknown function DUF444; KEGG: slo:Shew_1832 protein of unknown function DUF444; hypothetical protein 2824237..2825505 Shewanella halifaxensis HAW-EB4 5904731 YP_001674557.1 CDS Shal_2339 NC_010334.1 2825515 2827038 D PFAM: SpoVR family protein; KEGG: slo:Shew_1831 SpoVR family protein; SpoVR family protein 2825515..2827038 Shewanella halifaxensis HAW-EB4 5904732 YP_001674558.1 CDS Shal_2340 NC_010334.1 2827100 2827387 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(2827100..2827387) Shewanella halifaxensis HAW-EB4 5904729 YP_001674559.1 CDS Shal_2341 NC_010334.1 2827540 2828088 R PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: shw:Sputw3181_2115 protein of unknown function DUF882; hypothetical protein complement(2827540..2828088) Shewanella halifaxensis HAW-EB4 5904730 YP_001674560.1 CDS Shal_2342 NC_010334.1 2828185 2829579 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: slo:Shew_1828 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein complement(2828185..2829579) Shewanella halifaxensis HAW-EB4 5904700 YP_001674561.1 CDS Shal_2343 NC_010334.1 2829735 2830310 R KEGG: slo:Shew_1827 methylation site containing protein; methylation site containing protein complement(2829735..2830310) Shewanella halifaxensis HAW-EB4 5904633 YP_001674562.1 CDS Shal_2344 NC_010334.1 2832237 2832785 R KEGG: slo:Shew_1826 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2832237..2832785) Shewanella halifaxensis HAW-EB4 5904373 YP_001674563.1 CDS uvrC NC_010334.1 2832833 2834662 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2832833..2834662) Shewanella halifaxensis HAW-EB4 5904241 YP_001674564.1 CDS Shal_2346 NC_010334.1 2834680 2835324 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2834680..2835324) Shewanella halifaxensis HAW-EB4 5904242 YP_001674565.1 CDS Shal_2347 NC_010334.1 2835853 2837565 D KEGG: son:SO_1857 hypothetical ATP-dependent protease; ATP-dependent protease 2835853..2837565 Shewanella halifaxensis HAW-EB4 5904225 YP_001674566.1 CDS Shal_2348 NC_010334.1 2837633 2838148 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2837633..2838148 Shewanella halifaxensis HAW-EB4 5903378 YP_001674567.1 CDS Shal_2349 NC_010334.1 2838277 2838453 R PFAM: ribosome modulation factor; KEGG: slo:Shew_1816 ribosome modulation factor; ribosome modulation factor complement(2838277..2838453) Shewanella halifaxensis HAW-EB4 5904137 YP_001674568.1 CDS Shal_2350 NC_010334.1 2838651 2840525 R KEGG: shn:Shewana3_1604 hypothetical protein; hypothetical protein complement(2838651..2840525) Shewanella halifaxensis HAW-EB4 5904138 YP_001674569.1 CDS Shal_2351 NC_010334.1 2840555 2842489 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(2840555..2842489) Shewanella halifaxensis HAW-EB4 5903204 YP_001674570.1 CDS Shal_2352 NC_010334.1 2842491 2842652 R KEGG: shw:Sputw3181_2392 glutaredoxin 2; glutaredoxin complement(2842491..2842652) Shewanella halifaxensis HAW-EB4 5903205 YP_001674571.1 CDS rlmL NC_010334.1 2842717 2844852 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(2842717..2844852) Shewanella halifaxensis HAW-EB4 5902817 YP_001674572.1 CDS Shal_2354 NC_010334.1 2845558 2846157 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2845558..2846157 Shewanella halifaxensis HAW-EB4 5902818 YP_001674573.1 CDS Shal_2355 NC_010334.1 2846498 2847031 R PFAM: protein of unknown function DUF1379; KEGG: sbl:Sbal_2438 protein of unknown function DUF1379; hypothetical protein complement(2846498..2847031) Shewanella halifaxensis HAW-EB4 5902671 YP_001674574.1 CDS Shal_2356 NC_010334.1 2847205 2848224 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2847205..2848224) Shewanella halifaxensis HAW-EB4 5902672 YP_001674575.1 CDS Shal_2357 NC_010334.1 2848284 2853128 R PFAM: NAD-glutamate dehydrogenase; KEGG: slo:Shew_1809 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(2848284..2853128) Shewanella halifaxensis HAW-EB4 5903213 YP_001674576.1 CDS Shal_2358 NC_010334.1 2853390 2855693 R KEGG: slo:Shew_1808 hypothetical protein; hypothetical protein complement(2853390..2855693) Shewanella halifaxensis HAW-EB4 5903337 YP_001674577.1 CDS Shal_2359 NC_010334.1 2855706 2856722 R KEGG: shw:Sputw3181_1812 BNR repeat protein; BNR repeat-containing protein complement(2855706..2856722) Shewanella halifaxensis HAW-EB4 5903338 YP_001674578.1 CDS Shal_2360 NC_010334.1 2856773 2858137 R PFAM: protein of unknown function DUF1329; KEGG: slo:Shew_1806 protein of unknown function DUF1329; hypothetical protein complement(2856773..2858137) Shewanella halifaxensis HAW-EB4 5903363 YP_001674579.1 CDS Shal_2361 NC_010334.1 2858156 2860204 R PFAM: protein of unknown function DUF1302; KEGG: slo:Shew_1805 protein of unknown function DUF1302; hypothetical protein complement(2858156..2860204) Shewanella halifaxensis HAW-EB4 5903364 YP_001674580.1 CDS Shal_2362 NC_010334.1 2860522 2860719 R KEGG: slo:Shew_1804 hypothetical protein; hypothetical protein complement(2860522..2860719) Shewanella halifaxensis HAW-EB4 5904698 YP_001674581.1 CDS pepN NC_010334.1 2860844 2863405 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: slo:Shew_1803 aminopeptidase N; aminopeptidase N complement(2860844..2863405) Shewanella halifaxensis HAW-EB4 5904699 YP_001674582.1 CDS Shal_2364 NC_010334.1 2863479 2865524 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(2863479..2865524) Shewanella halifaxensis HAW-EB4 5904747 YP_001674583.1 CDS Shal_2365 NC_010334.1 2865558 2866196 R affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector complement(2865558..2866196) Shewanella halifaxensis HAW-EB4 5904748 YP_001674584.1 CDS Shal_2366 NC_010334.1 2866482 2866940 R PFAM: GAF domain protein; KEGG: saz:Sama_1583 GAF domain-containing protein; putative GAF sensor protein complement(2866482..2866940) Shewanella halifaxensis HAW-EB4 5905202 YP_001674585.1 CDS Shal_2367 NC_010334.1 2867025 2867315 R PFAM: YebG family protein; KEGG: slo:Shew_1799 YebG family protein; hypothetical protein complement(2867025..2867315) Shewanella halifaxensis HAW-EB4 5905203 YP_001674586.1 CDS Shal_2368 NC_010334.1 2867503 2868132 D PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1744 paraquat-inducible protein A; paraquat-inducible protein A 2867503..2868132 Shewanella halifaxensis HAW-EB4 5905198 YP_001674587.1 CDS Shal_2369 NC_010334.1 2868122 2868763 D PFAM: Paraquat-inducible protein A; KEGG: shw:Sputw3181_1802 paraquat-inducible protein A; paraquat-inducible protein A 2868122..2868763 Shewanella halifaxensis HAW-EB4 5905199 YP_001674588.1 CDS Shal_2370 NC_010334.1 2868741 2871371 D PFAM: Mammalian cell entry related domain protein; KEGG: sbl:Sbal_2453 mammalian cell entry related domain protein; hypothetical protein 2868741..2871371 Shewanella halifaxensis HAW-EB4 5905262 YP_001674589.1 CDS Shal_2371 NC_010334.1 2871468 2872694 R PFAM: nucleoside recognition domain protein; KEGG: slo:Shew_1584 nucleoside recognition domain protein; nucleoside recognition domain-containing protein complement(2871468..2872694) Shewanella halifaxensis HAW-EB4 5905263 YP_001674590.1 CDS yebU NC_010334.1 2872763 2874202 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2872763..2874202 Shewanella halifaxensis HAW-EB4 5905331 YP_001674591.1 CDS Shal_2373 NC_010334.1 2874503 2875291 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sfr:Sfri_2237 hydrolase, TatD family protein; TatD family hydrolase complement(2874503..2875291) Shewanella halifaxensis HAW-EB4 5905332 YP_001674592.1 CDS Shal_2374 NC_010334.1 2875337 2875663 R KEGG: shw:Sputw3181_1797 type IV pilus biogenesis protein PilZ; type IV pilus biogenesis protein PilZ complement(2875337..2875663) Shewanella halifaxensis HAW-EB4 5905449 YP_001674593.1 CDS Shal_2375 NC_010334.1 2875673 2876587 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: slo:Shew_1580 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' complement(2875673..2876587) Shewanella halifaxensis HAW-EB4 5905450 YP_001674594.1 CDS tmk NC_010334.1 2876589 2877227 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2876589..2877227) Shewanella halifaxensis HAW-EB4 5905447 YP_001674595.1 CDS Shal_2377 NC_010334.1 2877224 2878231 R PFAM: aminodeoxychorismate lyase; KEGG: slo:Shew_1578 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(2877224..2878231) Shewanella halifaxensis HAW-EB4 5905448 YP_001674596.1 CDS Shal_2378 NC_010334.1 2878228 2879169 R PFAM: aminotransferase class IV; KEGG: she:Shewmr4_1659 aminotransferase, class IV; aminodeoxychorismate lyase complement(2878228..2879169) Shewanella halifaxensis HAW-EB4 5905383 YP_001674597.1 CDS Shal_2379 NC_010334.1 2879242 2879880 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2879242..2879880) Shewanella halifaxensis HAW-EB4 5905384 YP_001674598.1 CDS Shal_2380 NC_010334.1 2879892 2881007 R KEGG: slo:Shew_1574 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein complement(2879892..2881007) Shewanella halifaxensis HAW-EB4 5905294 YP_001674599.1 CDS metG NC_010334.1 2881168 2883207 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2881168..2883207 Shewanella halifaxensis HAW-EB4 5905295 YP_001674600.1 CDS Shal_2382 NC_010334.1 2883391 2884143 R PFAM: protein of unknown function DUF34; KEGG: shw:Sputw3181_1787 protein of unknown function DUF34; hypothetical protein complement(2883391..2884143) Shewanella halifaxensis HAW-EB4 5905377 YP_001674601.1 CDS Shal_2383 NC_010334.1 2884391 2884735 D KEGG: slo:Shew_1571 hypothetical protein; hypothetical protein 2884391..2884735 Shewanella halifaxensis HAW-EB4 5905378 YP_001674602.1 CDS Shal_2384 NC_010334.1 2884960 2885298 D KEGG: mxa:MXAN_0539 hypothetical protein; hypothetical protein 2884960..2885298 Shewanella halifaxensis HAW-EB4 5905345 YP_001674603.1 CDS Shal_2386 NC_010334.1 2885824 2887056 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1831 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 2885824..2887056 Shewanella halifaxensis HAW-EB4 5905635 YP_001674604.1 CDS Shal_2387 NC_010334.1 2887357 2889078 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: slo:Shew_1776 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 2887357..2889078 Shewanella halifaxensis HAW-EB4 5905723 YP_001674605.1 CDS Shal_2388 NC_010334.1 2889078 2889572 D TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sbm:Shew185_2375 acetolactate synthase, small subunit; acetolactate synthase small subunit 2889078..2889572 Shewanella halifaxensis HAW-EB4 5905724 YP_001674606.1 CDS Shal_2389 NC_010334.1 2889658 2890098 R PFAM: heat shock protein Hsp20; KEGG: slo:Shew_2134 heat shock protein HSP20; heat shock protein Hsp20 complement(2889658..2890098) Shewanella halifaxensis HAW-EB4 5905778 YP_001674607.1 CDS ushA NC_010334.1 2890467 2892248 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2890467..2892248) Shewanella halifaxensis HAW-EB4 5905779 YP_001674608.1 CDS Shal_2391 NC_010334.1 2892622 2893302 R PFAM: phospholipase/Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase complement(2892622..2893302) Shewanella halifaxensis HAW-EB4 5905819 YP_001674609.1 CDS Shal_2392 NC_010334.1 2893537 2894535 D KEGG: slo:Shew_2137 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2893537..2894535 Shewanella halifaxensis HAW-EB4 5905820 YP_001674610.1 CDS Shal_2393 NC_010334.1 2894556 2894774 R KEGG: slo:Shew_2138 hypothetical protein; hypothetical protein complement(2894556..2894774) Shewanella halifaxensis HAW-EB4 5905780 YP_001674611.1 CDS Shal_2394 NC_010334.1 2894866 2895348 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_2139 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2894866..2895348) Shewanella halifaxensis HAW-EB4 5905781 YP_001674612.1 CDS Shal_2395 NC_010334.1 2895527 2896717 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase complement(2895527..2896717) Shewanella halifaxensis HAW-EB4 5905486 YP_001674613.1 CDS Shal_2396 NC_010334.1 2897086 2897445 D KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein 2897086..2897445 Shewanella halifaxensis HAW-EB4 5905487 YP_001674614.1 CDS Shal_2397 NC_010334.1 2897526 2898188 D KEGG: sbl:Sbal_2593 hypothetical protein; hypothetical protein 2897526..2898188 Shewanella halifaxensis HAW-EB4 5905891 YP_001674615.1 CDS Shal_2398 NC_010334.1 2898218 2899162 R PFAM: response regulator receiver; CheW domain protein; KEGG: shn:Shewana3_2462 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein complement(2898218..2899162) Shewanella halifaxensis HAW-EB4 5905892 YP_001674616.1 CDS Shal_2399 NC_010334.1 2899303 2900904 R PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_2145 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(2899303..2900904) Shewanella halifaxensis HAW-EB4 5905502 YP_001674617.1 CDS Shal_2400 NC_010334.1 2901420 2901593 D KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein 2901420..2901593 Shewanella halifaxensis HAW-EB4 5905503 YP_001674618.1 CDS Shal_2401 NC_010334.1 2901865 2902800 R KEGG: shw:Sputw3181_1679 hypothetical protein; hypothetical protein complement(2901865..2902800) Shewanella halifaxensis HAW-EB4 5906912 YP_001674619.1 CDS Shal_2402 NC_010334.1 2903112 2903519 D PFAM: protein of unknown function DUF307; KEGG: shw:Sputw3181_1678 protein of unknown function DUF307; hypothetical protein 2903112..2903519 Shewanella halifaxensis HAW-EB4 5906913 YP_001674620.1 CDS Shal_2403 NC_010334.1 2903516 2904313 R PFAM: alpha/beta hydrolase fold; KEGG: shn:Shewana3_2471 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein complement(2903516..2904313) Shewanella halifaxensis HAW-EB4 5906287 YP_001674621.1 CDS Shal_2404 NC_010334.1 2904361 2905155 R KEGG: sbm:Shew185_2644 conserved hypothetical ABC transporter protein; ABC transporter complement(2904361..2905155) Shewanella halifaxensis HAW-EB4 5906288 YP_001674622.1 CDS Shal_2405 NC_010334.1 2905432 2905656 D KEGG: slo:Shew_2150 integral membrane protein TerC; integral membrane protein TerC 2905432..2905656 Shewanella halifaxensis HAW-EB4 5906765 YP_001674623.1 CDS Shal_2406 NC_010334.1 2905919 2906911 D PFAM: Di-haem cytochrome c peroxidase; KEGG: shw:Sputw3181_1721 cytochrome-c peroxidase; cytochrome-c peroxidase 2905919..2906911 Shewanella halifaxensis HAW-EB4 5906766 YP_001674624.1 CDS Shal_2407 NC_010334.1 2907025 2907384 R KEGG: slo:Shew_2151 hypothetical protein; hypothetical protein complement(2907025..2907384) Shewanella halifaxensis HAW-EB4 5906459 YP_001674625.1 CDS Shal_2408 NC_010334.1 2907800 2908714 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_2480 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2907800..2908714) Shewanella halifaxensis HAW-EB4 5906460 YP_001674626.1 CDS Shal_2409 NC_010334.1 2908870 2910030 D PFAM: homogentisate 12-dioxygenase; KEGG: sfr:Sfri_2326 homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase 2908870..2910030 Shewanella halifaxensis HAW-EB4 5906432 YP_001674627.1 CDS Shal_2410 NC_010334.1 2910135 2911175 D KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2910135..2911175 Shewanella halifaxensis HAW-EB4 5906433 YP_001674628.1 CDS Shal_2411 NC_010334.1 2911502 2912449 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cps:CPS_0452 sensory box/GGDEF domain protein; PAS/PAC sensor-containing diguanylate cyclase complement(2911502..2912449) Shewanella halifaxensis HAW-EB4 5905911 YP_001674629.1 CDS Shal_2412 NC_010334.1 2912539 2912676 R KEGG: son:SO_3447 hypothetical protein; hypothetical protein complement(2912539..2912676) Shewanella halifaxensis HAW-EB4 5906321 YP_001674630.1 CDS Shal_2413 NC_010334.1 2912912 2913022 D KEGG: sdn:Sden_1136 transposase; transposase 2912912..2913022 Shewanella halifaxensis HAW-EB4 5906322 YP_001674631.1 CDS Shal_2414 NC_010334.1 2913231 2914211 R PFAM: protein of unknown function DUF1568; KEGG: pin:Ping_3091 hypothetical protein DUF1568; hypothetical protein complement(2913231..2914211) Shewanella halifaxensis HAW-EB4 5906317 YP_001674632.1 CDS Shal_2415 NC_010334.1 2914272 2914793 D KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2914272..2914793 Shewanella halifaxensis HAW-EB4 5906318 YP_001674633.1 CDS Shal_2416 NC_010334.1 2915884 2916417 D PFAM: protein of unknown function DUF442; KEGG: shw:Sputw3181_4004 hypothetical protein; hypothetical protein 2915884..2916417 Shewanella halifaxensis HAW-EB4 5905953 YP_001674634.1 CDS Shal_2417 NC_010334.1 2917801 2918421 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO_1954 transporter, LysE family; lysine exporter protein LysE/YggA 2917801..2918421 Shewanella halifaxensis HAW-EB4 5905954 YP_001674635.1 CDS Shal_2418 NC_010334.1 2918477 2918854 D KEGG: saz:Sama_2872 hypothetical protein; hypothetical protein 2918477..2918854 Shewanella halifaxensis HAW-EB4 5907034 YP_001674636.1 CDS Shal_2419 NC_010334.1 2919092 2919421 D hypothetical protein 2919092..2919421 Shewanella halifaxensis HAW-EB4 5907035 YP_001674637.1 CDS Shal_2420 NC_010334.1 2919753 2921540 D KEGG: sbm:Shew185_2658 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2919753..2921540 Shewanella halifaxensis HAW-EB4 5906908 YP_001674638.1 CDS rihA NC_010334.1 2921903 2922871 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 2921903..2922871 Shewanella halifaxensis HAW-EB4 5906909 YP_001674639.1 CDS Shal_2422 NC_010334.1 2923193 2924374 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: oan:Oant_3490 major facilitator superfamily MFS_1; major facilitator transporter complement(2923193..2924374) Shewanella halifaxensis HAW-EB4 5906787 YP_001674640.1 CDS Shal_2423 NC_010334.1 2924773 2924994 R KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(2924773..2924994) Shewanella halifaxensis HAW-EB4 5906788 YP_001674641.1 CDS Shal_2424 NC_010334.1 2926189 2927214 D KEGG: ppr:PBPRB0021 putative simple sugar transport system substrate-binding protein; putative simple sugar transport system substrate-binding protein 2926189..2927214 Shewanella halifaxensis HAW-EB4 5906703 YP_001674642.1 CDS Shal_2425 NC_010334.1 2927214 2927981 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0020 hypothetical ABC-type sugar transport system, ATPase component; ABC transporter-like protein 2927214..2927981 Shewanella halifaxensis HAW-EB4 5906704 YP_001674643.1 CDS Shal_2426 NC_010334.1 2927978 2928967 D PFAM: inner-membrane translocator; KEGG: ppr:PBPRB0019 putative AraH,Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; monosaccharide-transporting ATPase 2927978..2928967 Shewanella halifaxensis HAW-EB4 5906694 YP_001674644.1 CDS Shal_2427 NC_010334.1 2929117 2930478 D PFAM: glycoside hydrolase family 4; KEGG: ppr:PBPRB0018 putative alpha-galactosidase (melibiase); glycoside hydrolase family protein 2929117..2930478 Shewanella halifaxensis HAW-EB4 5906695 YP_001674645.1 CDS Shal_2428 NC_010334.1 2930653 2932227 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: slo:Shew_2159 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer complement(2930653..2932227) Shewanella halifaxensis HAW-EB4 5906686 YP_001674646.1 CDS Shal_2429 NC_010334.1 2932445 2933959 R KEGG: shm:Shewmr7_2371 dipeptidase, putative; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; hypothetical protein complement(2932445..2933959) Shewanella halifaxensis HAW-EB4 5906687 YP_001674647.1 CDS Shal_2430 NC_010334.1 2934170 2936359 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_2161 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2934170..2936359 Shewanella halifaxensis HAW-EB4 5906678 YP_001674648.1 CDS Shal_2431 NC_010334.1 2936796 2937074 R KEGG: shn:Shewana3_2752 hypothetical protein; hypothetical protein complement(2936796..2937074) Shewanella halifaxensis HAW-EB4 5906679 YP_001674649.1 CDS Shal_2432 NC_010334.1 2937373 2937984 D PFAM: protein of unknown function DUF938; KEGG: shn:Shewana3_1834 protein of unknown function DUF938; hypothetical protein 2937373..2937984 Shewanella halifaxensis HAW-EB4 5906582 YP_001674650.1 CDS Shal_2433 NC_010334.1 2937981 2938667 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(2937981..2938667) Shewanella halifaxensis HAW-EB4 5906583 YP_001674651.1 CDS Shal_2434 NC_010334.1 2938866 2940656 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sfr:Sfri_2744 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2938866..2940656) Shewanella halifaxensis HAW-EB4 5906403 YP_001674652.1 CDS Shal_2435 NC_010334.1 2940876 2941721 D PFAM: Aldose 1-epimerase; KEGG: sbm:Shew185_1722 aldose 1-epimerase; aldose 1-epimerase 2940876..2941721 Shewanella halifaxensis HAW-EB4 5906404 YP_001674653.1 CDS Shal_2436 NC_010334.1 2941888 2942127 R hypothetical protein complement(2941888..2942127) Shewanella halifaxensis HAW-EB4 5906391 YP_001674654.1 CDS Shal_2437 NC_010334.1 2942766 2945975 D KEGG: shm:Shewmr7_2186 hypothetical protein; hypothetical protein 2942766..2945975 Shewanella halifaxensis HAW-EB4 5906392 YP_001674655.1 CDS Shal_2438 NC_010334.1 2946078 2946278 D KEGG: shn:Shewana3_1844 hypothetical protein; hypothetical protein 2946078..2946278 Shewanella halifaxensis HAW-EB4 5906363 YP_001674656.1 CDS Shal_2439 NC_010334.1 2946303 2946623 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_2168 uncharacterized conserved protein UCP025560; hypothetical protein 2946303..2946623 Shewanella halifaxensis HAW-EB4 5906276 YP_001674657.1 CDS Shal_2440 NC_010334.1 2946757 2947164 D KEGG: vha:VIBHAR_02135 hypothetical protein; hypothetical protein 2946757..2947164 Shewanella halifaxensis HAW-EB4 5906277 YP_001674658.1 CDS Shal_2441 NC_010334.1 2947362 2947637 D hypothetical protein 2947362..2947637 Shewanella halifaxensis HAW-EB4 5906208 YP_001674659.1 CDS Shal_2442 NC_010334.1 2947653 2948177 R KEGG: sbm:Shew185_1810 hypothetical protein; hypothetical protein complement(2947653..2948177) Shewanella halifaxensis HAW-EB4 5906209 YP_001674660.1 CDS Shal_2443 NC_010334.1 2948167 2949324 R KEGG: sbm:Shew185_1809 hypothetical protein; hypothetical protein complement(2948167..2949324) Shewanella halifaxensis HAW-EB4 5905435 YP_001674661.1 CDS Shal_2444 NC_010334.1 2949314 2950453 R KEGG: sbl:Sbal_1816 hypothetical protein; hypothetical protein complement(2949314..2950453) Shewanella halifaxensis HAW-EB4 5905436 YP_001674662.1 CDS Shal_2445 NC_010334.1 2950497 2951648 R PFAM: protein of unknown function UPF0118; KEGG: ppr:PBPRA1562 hypothetical protein; hypothetical protein complement(2950497..2951648) Shewanella halifaxensis HAW-EB4 5905221 YP_001674663.1 CDS Shal_2446 NC_010334.1 2951650 2952327 R PFAM: Ion transport 2 domain protein; KEGG: vpa:VPA1582 hypothetical protein; Ion transport 2 domain-containing protein complement(2951650..2952327) Shewanella halifaxensis HAW-EB4 5905222 YP_001674664.1 CDS Shal_2447 NC_010334.1 2952598 2953911 R PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein; hypothetical protein complement(2952598..2953911) Shewanella halifaxensis HAW-EB4 5905151 YP_001674665.1 CDS Shal_2448 NC_010334.1 2953908 2955185 R KEGG: saz:Sama_1471 membrane-fusion protein; membrane-fusion protein complement(2953908..2955185) Shewanella halifaxensis HAW-EB4 5905152 YP_001674666.1 CDS Shal_2449 NC_010334.1 2955182 2956348 R KEGG: saz:Sama_1470 membrane-fusion protein; membrane-fusion protein complement(2955182..2956348) Shewanella halifaxensis HAW-EB4 5905215 YP_001674667.1 CDS Shal_2450 NC_010334.1 2956345 2957478 R KEGG: saz:Sama_1469 multidrug resistance efflux pump-like protein; multidrug resistance efflux pump-like protein complement(2956345..2957478) Shewanella halifaxensis HAW-EB4 5905216 YP_001674668.1 CDS Shal_2451 NC_010334.1 2957468 2958154 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2957468..2958154) Shewanella halifaxensis HAW-EB4 5905039 YP_001674669.1 CDS Shal_2452 NC_010334.1 2958644 2959033 R KEGG: slo:Shew_1747 hypothetical protein; hypothetical protein complement(2958644..2959033) Shewanella halifaxensis HAW-EB4 5905040 YP_001674670.1 CDS Shal_2453 NC_010334.1 2959213 2959617 R KEGG: shw:Sputw3181_2406 hypothetical protein; hypothetical protein complement(2959213..2959617) Shewanella halifaxensis HAW-EB4 5904819 YP_001674671.1 CDS Shal_2454 NC_010334.1 2959948 2960547 R KEGG: slo:Shew_1744 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2959948..2960547) Shewanella halifaxensis HAW-EB4 5904820 YP_001674672.1 CDS Shal_2455 NC_010334.1 2960671 2961276 R PFAM: nitroreductase; KEGG: sfr:Sfri_1532 nitroreductase; nitroreductase complement(2960671..2961276) Shewanella halifaxensis HAW-EB4 5904671 YP_001674673.1 CDS Shal_2456 NC_010334.1 2961456 2962052 R PFAM: DoxX family protein; KEGG: sfr:Sfri_1531 DoxX family protein; DoxX family protein complement(2961456..2962052) Shewanella halifaxensis HAW-EB4 5904672 YP_001674674.1 CDS Shal_2457 NC_010334.1 2962151 2962993 R KEGG: sdn:Sden_2317 hypothetical protein; hypothetical protein complement(2962151..2962993) Shewanella halifaxensis HAW-EB4 5904678 YP_001674675.1 CDS Shal_2458 NC_010334.1 2963657 2964814 R PFAM: aminoglycoside phosphotransferase; KEGG: slo:Shew_1738 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2963657..2964814) Shewanella halifaxensis HAW-EB4 5904679 YP_001674676.1 CDS Shal_2459 NC_010334.1 2964815 2965477 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: sbl:Sbal_1804 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC complement(2964815..2965477) Shewanella halifaxensis HAW-EB4 5903184 YP_001674677.1 CDS Shal_2460 NC_010334.1 2965622 2965882 R KEGG: sfr:Sfri_1527 hypothetical protein; hypothetical protein complement(2965622..2965882) Shewanella halifaxensis HAW-EB4 5903185 YP_001674678.1 CDS Shal_2461 NC_010334.1 2966004 2968142 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_1735 TonB-dependent receptor; TonB-dependent receptor complement(2966004..2968142) Shewanella halifaxensis HAW-EB4 5905924 YP_001674679.1 CDS Shal_2462 NC_010334.1 2968452 2968841 R PFAM: protein of unknown function DUF1425; KEGG: slo:Shew_1734 protein of unknown function DUF1425; hypothetical protein complement(2968452..2968841) Shewanella halifaxensis HAW-EB4 5905925 YP_001674680.1 CDS Shal_2463 NC_010334.1 2968910 2969395 R PFAM: thioesterase superfamily protein; KEGG: son:SO_2721 hypothetical protein; thioesterase superfamily protein complement(2968910..2969395) Shewanella halifaxensis HAW-EB4 5906005 YP_001674681.1 CDS Shal_2464 NC_010334.1 2969388 2969891 R PFAM: thioesterase superfamily protein; KEGG: sbm:Shew185_1791 thioesterase superfamily protein; thioesterase superfamily protein complement(2969388..2969891) Shewanella halifaxensis HAW-EB4 5904795 YP_001674682.1 CDS Shal_2465 NC_010334.1 2969888 2970244 R PFAM: histidine triad (HIT) protein; KEGG: slo:Shew_1731 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2969888..2970244) Shewanella halifaxensis HAW-EB4 5904796 YP_001674683.1 CDS Shal_2466 NC_010334.1 2970441 2970854 D PFAM: regulatory protein TetR; KEGG: tfu:Tfu_2816 hypothetical protein; TetR family transcriptional regulator 2970441..2970854 Shewanella halifaxensis HAW-EB4 5905253 YP_001674684.1 CDS Shal_2467 NC_010334.1 2971068 2971514 R hypothetical protein complement(2971068..2971514) Shewanella halifaxensis HAW-EB4 5905454 YP_001674685.1 CDS Shal_2468 NC_010334.1 2971516 2971917 R hypothetical protein complement(2971516..2971917) Shewanella halifaxensis HAW-EB4 5905455 YP_001674686.1 CDS Shal_2469 NC_010334.1 2972031 2972666 R PFAM: regulatory protein LuxR; KEGG: saz:Sama_1446 response regulator receiver protein; LuxR family transcriptional regulator complement(2972031..2972666) Shewanella halifaxensis HAW-EB4 5904311 YP_001674687.1 CDS Shal_2470 NC_010334.1 2972956 2973279 R KEGG: sbl:Sbal_1794 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(2972956..2973279) Shewanella halifaxensis HAW-EB4 5904312 YP_001674688.1 CDS Shal_2472 NC_010334.1 2973716 2974090 R KEGG: slo:Shew_1724 cytochrome c3; cytochrome c3 complement(2973716..2974090) Shewanella halifaxensis HAW-EB4 5906043 YP_001674689.1 CDS Shal_2473 NC_010334.1 2974352 2975215 R putative metalloprotease; heat shock protein HtpX complement(2974352..2975215) Shewanella halifaxensis HAW-EB4 5905836 YP_001674690.1 CDS Shal_2474 NC_010334.1 2975564 2976229 R KEGG: sbm:Shew185_1754 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase complement(2975564..2976229) Shewanella halifaxensis HAW-EB4 5905837 YP_001674691.1 CDS Shal_2475 NC_010334.1 2976248 2977018 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; type 11 methyltransferase complement(2976248..2977018) Shewanella halifaxensis HAW-EB4 5906523 YP_001674692.1 CDS Shal_2476 NC_010334.1 2977034 2978227 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: sbm:Shew185_1752 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(2977034..2978227) Shewanella halifaxensis HAW-EB4 5906524 YP_001674693.1 CDS Shal_2477 NC_010334.1 2978318 2979370 R KEGG: shn:Shewana3_2519 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2978318..2979370) Shewanella halifaxensis HAW-EB4 5905856 YP_001674694.1 CDS Shal_2478 NC_010334.1 2979618 2980958 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sdn:Sden_1657 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2979618..2980958 Shewanella halifaxensis HAW-EB4 5905857 YP_001674695.1 CDS Shal_2479 NC_010334.1 2981224 2983320 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2981224..2983320 Shewanella halifaxensis HAW-EB4 5905821 YP_001674696.1 CDS Shal_2480 NC_010334.1 2983423 2983887 R KEGG: shn:Shewana3_1718 hypothetical protein; hypothetical protein complement(2983423..2983887) Shewanella halifaxensis HAW-EB4 5905822 YP_001674697.1 CDS Shal_2481 NC_010334.1 2983949 2984674 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2983949..2984674) Shewanella halifaxensis HAW-EB4 5904013 YP_001674698.1 CDS fur NC_010334.1 2984942 2985373 D negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2984942..2985373 Shewanella halifaxensis HAW-EB4 5904014 YP_001674699.1 CDS Shal_2483 NC_010334.1 2985431 2985931 R PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_1660 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2985431..2985931) Shewanella halifaxensis HAW-EB4 5904212 YP_001674700.1 CDS Shal_2484 NC_010334.1 2986082 2987734 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: slo:Shew_1659 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 2986082..2987734 Shewanella halifaxensis HAW-EB4 5904213 YP_001674701.1 CDS Shal_2485 NC_010334.1 2987869 2988177 R KEGG: ppr:PBPRA2342 hypothetical protein; hypothetical protein complement(2987869..2988177) Shewanella halifaxensis HAW-EB4 5904073 YP_001674702.1 CDS Shal_2486 NC_010334.1 2988416 2989288 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: saz:Sama_1430 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha complement(2988416..2989288) Shewanella halifaxensis HAW-EB4 5904074 YP_001674703.1 CDS sucC NC_010334.1 2989288 2990454 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2989288..2990454) Shewanella halifaxensis HAW-EB4 5903658 YP_001674704.1 CDS Shal_2488 NC_010334.1 2990533 2991729 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: slo:Shew_1656 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(2990533..2991729) Shewanella halifaxensis HAW-EB4 5903659 YP_001674705.1 CDS sucA NC_010334.1 2991762 2994584 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(2991762..2994584) Shewanella halifaxensis HAW-EB4 5905571 YP_001674706.1 CDS sdhB NC_010334.1 2994789 2995496 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(2994789..2995496) Shewanella halifaxensis HAW-EB4 5905572 YP_001674707.1 CDS sdhA NC_010334.1 2995509 2997275 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2995509..2997275) Shewanella halifaxensis HAW-EB4 5904210 YP_001674708.1 CDS Shal_2492 NC_010334.1 2997276 2997623 R TIGRFAM: Succinate dehydrogenase hydrophobic membrane anchor; KEGG: shw:Sputw3181_1736 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase hydrophobic membrane anchor complement(2997276..2997623) Shewanella halifaxensis HAW-EB4 5904211 YP_001674709.1 CDS Shal_2493 NC_010334.1 2997617 2997991 R TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: slo:Shew_1651 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 subunit complement(2997617..2997991) Shewanella halifaxensis HAW-EB4 5903867 YP_001674710.1 CDS gltA NC_010334.1 2998423 2999712 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2998423..2999712 Shewanella halifaxensis HAW-EB4 5903700 YP_001674711.1 CDS Shal_2495 NC_010334.1 3000057 3001118 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3000057..3001118 Shewanella halifaxensis HAW-EB4 5903701 YP_001674712.1 CDS Shal_2496 NC_010334.1 3001233 3004526 D PFAM: acriflavin resistance protein; KEGG: slo:Shew_1648 acriflavin resistance protein; acriflavin resistance protein 3001233..3004526 Shewanella halifaxensis HAW-EB4 5904524 YP_001674713.1 CDS Shal_2497 NC_010334.1 3004523 3007600 D PFAM: acriflavin resistance protein; KEGG: slo:Shew_1647 acriflavin resistance protein; acriflavin resistance protein 3004523..3007600 Shewanella halifaxensis HAW-EB4 5904525 YP_001674714.1 CDS Shal_2498 NC_010334.1 3007777 3009222 D KEGG: slo:Shew_0958 hypothetical protein; hypothetical protein 3007777..3009222 Shewanella halifaxensis HAW-EB4 5904332 YP_001674715.1 CDS Shal_2499 NC_010334.1 3009439 3011754 D KEGG: vpa:VP1135 hypothetical protein; hypothetical protein 3009439..3011754 Shewanella halifaxensis HAW-EB4 5904333 YP_001674716.1 CDS Shal_2500 NC_010334.1 3011994 3013364 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_1645 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 3011994..3013364 Shewanella halifaxensis HAW-EB4 5904817 YP_001674717.1 CDS Shal_2501 NC_010334.1 3013408 3014208 D PFAM: DSBA oxidoreductase; KEGG: slo:Shew_1644 DsbA oxidoreductase; DSBA oxidoreductase 3013408..3014208 Shewanella halifaxensis HAW-EB4 5904818 YP_001674718.1 CDS Shal_2502 NC_010334.1 3014934 3017285 D KEGG: slo:Shew_1643 hypothetical protein; hypothetical protein 3014934..3017285 Shewanella halifaxensis HAW-EB4 5904457 YP_001674719.1 CDS Shal_2503 NC_010334.1 3017487 3020522 R PFAM: Peptidase M11 gametolysin; KEGG: slo:Shew_1642 peptidase M11, gametolysin; peptidase M11 gametolysin complement(3017487..3020522) Shewanella halifaxensis HAW-EB4 5904458 YP_001674720.1 CDS Shal_2504 NC_010334.1 3021047 3021220 R PFAM: protein of unknown function DUF343; KEGG: son:SO_2800 hypothetical protein; hypothetical protein complement(3021047..3021220) Shewanella halifaxensis HAW-EB4 5904455 YP_001674721.1 CDS lpxK NC_010334.1 3021232 3022224 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(3021232..3022224) Shewanella halifaxensis HAW-EB4 5904456 YP_001674722.1 CDS Shal_2506 NC_010334.1 3022225 3024048 R KEGG: son:SO_2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter ATPase/inner membrane subunits MsbA complement(3022225..3024048) Shewanella halifaxensis HAW-EB4 5904250 YP_001674723.1 CDS Shal_2507 NC_010334.1 3024081 3026432 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: shw:Sputw3181_2543 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 complement(3024081..3026432) Shewanella halifaxensis HAW-EB4 5904251 YP_001674724.1 CDS Shal_2508 NC_010334.1 3026464 3026970 D KEGG: slo:Shew_1636 hypothetical protein; hypothetical protein 3026464..3026970 Shewanella halifaxensis HAW-EB4 5905389 YP_001674725.1 CDS Shal_2509 NC_010334.1 3027043 3027840 R PFAM: peptidase M23B; KEGG: slo:Shew_1474 peptidase M23B; peptidase M23B complement(3027043..3027840) Shewanella halifaxensis HAW-EB4 5905390 YP_001674726.1 CDS Shal_2510 NC_010334.1 3027907 3028797 R KEGG: slo:Shew_1473 hypothetical protein; hypothetical protein complement(3027907..3028797) Shewanella halifaxensis HAW-EB4 5905597 YP_001674727.1 CDS Shal_2511 NC_010334.1 3029009 3030037 R PFAM: 37kDa nucleoid-associated protein; KEGG: slo:Shew_1472 37 kDa nucleoid-associated protein; nucleoid-associated protein NdpA complement(3029009..3030037) Shewanella halifaxensis HAW-EB4 5905598 YP_001674728.1 CDS Shal_2512 NC_010334.1 3030519 3030737 D PFAM: protein of unknown function DUF1414; KEGG: son:SO_2176 hypothetical protein; hypothetical protein 3030519..3030737 Shewanella halifaxensis HAW-EB4 5905209 YP_001674729.1 CDS Shal_2513 NC_010334.1 3030816 3032600 D PFAM: sulfatase; KEGG: shn:Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; sulfatase 3030816..3032600 Shewanella halifaxensis HAW-EB4 5905210 YP_001674730.1 CDS Shal_2514 NC_010334.1 3032928 3033152 R KEGG: slo:Shew_2961 hypothetical protein; hypothetical protein complement(3032928..3033152) Shewanella halifaxensis HAW-EB4 5907019 YP_001674731.1 CDS Shal_2515 NC_010334.1 3033553 3035751 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_1467 diguanylate cyclase; diguanylate cyclase 3033553..3035751 Shewanella halifaxensis HAW-EB4 5905223 YP_001674732.1 CDS Shal_2516 NC_010334.1 3035835 3037274 R KEGG: sbl:Sbal_2541 hypothetical protein; hypothetical protein complement(3035835..3037274) Shewanella halifaxensis HAW-EB4 5906406 YP_001674733.1 CDS nadE NC_010334.1 3037532 3038362 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(3037532..3038362) Shewanella halifaxensis HAW-EB4 5906407 YP_001674734.1 CDS Shal_2518 NC_010334.1 3038532 3039176 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1462 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3038532..3039176 Shewanella halifaxensis HAW-EB4 5905359 YP_001674735.1 CDS Shal_2519 NC_010334.1 3039240 3040592 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_2341 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator complement(3039240..3040592) Shewanella halifaxensis HAW-EB4 5904515 YP_001674736.1 CDS Shal_2520 NC_010334.1 3040589 3042355 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_2342 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(3040589..3042355) Shewanella halifaxensis HAW-EB4 5904516 YP_001674737.1 CDS Shal_2521 NC_010334.1 3042726 3043472 D KEGG: slo:Shew_2343 hypothetical protein; hypothetical protein 3042726..3043472 Shewanella halifaxensis HAW-EB4 5904723 YP_001674738.1 CDS Shal_2522 NC_010334.1 3043772 3045856 D PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: vvy:VVA1275 hypothetical protein; diguanylate phosphodiesterase 3043772..3045856 Shewanella halifaxensis HAW-EB4 5904724 YP_001674739.1 CDS Shal_2523 NC_010334.1 3047155 3051246 R PFAM: Proprotein convertase P; KEGG: slo:Shew_1752 proprotein convertase, P; proprotein convertase P complement(3047155..3051246) Shewanella halifaxensis HAW-EB4 5904578 YP_001674740.1 CDS Shal_2524 NC_010334.1 3051233 3052828 R KEGG: slo:Shew_1751 hypothetical protein; hypothetical protein complement(3051233..3052828) Shewanella halifaxensis HAW-EB4 5904579 YP_001674741.1 CDS Shal_2525 NC_010334.1 3053086 3054279 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: rci:RCIX171 transposase; transposase IS204/IS1001/IS1096/IS1165 family protein complement(3053086..3054279) Shewanella halifaxensis HAW-EB4 5904599 YP_001674742.1 CDS Shal_2526 NC_010334.1 3055072 3057006 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sdn:Sden_1155 radical SAM; radical SAM domain-containing protein complement(3055072..3057006) Shewanella halifaxensis HAW-EB4 5904600 YP_001674743.1 CDS Shal_2527 NC_010334.1 3057314 3057658 D KEGG: slo:Shew_2344 hypothetical protein; hypothetical protein 3057314..3057658 Shewanella halifaxensis HAW-EB4 5906278 YP_001674744.1 CDS Shal_2528 NC_010334.1 3057701 3059254 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saz:Sama_1545 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3057701..3059254) Shewanella halifaxensis HAW-EB4 5906279 YP_001674745.1 CDS Shal_2529 NC_010334.1 3059256 3059987 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2346 ABC transporter-related protein; ABC transporter-like protein complement(3059256..3059987) Shewanella halifaxensis HAW-EB4 5904984 YP_001674746.1 CDS Shal_2530 NC_010334.1 3059992 3060846 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: saz:Sama_1543 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(3059992..3060846) Shewanella halifaxensis HAW-EB4 5904985 YP_001674747.1 CDS Shal_2531 NC_010334.1 3061133 3061807 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbm:Shew185_2494 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3061133..3061807 Shewanella halifaxensis HAW-EB4 5905042 YP_001674748.1 CDS Shal_2532 NC_010334.1 3061798 3063150 D PFAM: ATP-binding region ATPase domain protein; KEGG: sbl:Sbal_2502 integral membrane sensor signal transduction histidine kinase; histidine kinase 3061798..3063150 Shewanella halifaxensis HAW-EB4 5905043 YP_001674749.1 CDS Shal_2533 NC_010334.1 3063487 3064179 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: shm:Shewmr7_1653 prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase complement(3063487..3064179) Shewanella halifaxensis HAW-EB4 5906887 YP_001674750.1 CDS Shal_2534 NC_010334.1 3064236 3065150 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB0854 hypothetical transcriptional regulator; LysR family transcriptional regulator complement(3064236..3065150) Shewanella halifaxensis HAW-EB4 5906888 YP_001674751.1 CDS Shal_2535 NC_010334.1 3065359 3067410 D PFAM: beta-lactamase domain protein; KEGG: vvy:VVA1356 alkyl sulfatase; beta-lactamase domain-containing protein 3065359..3067410 Shewanella halifaxensis HAW-EB4 5906771 YP_001674752.1 CDS Shal_2536 NC_010334.1 3067569 3068345 D KEGG: vfi:VFA0845 hypothetical protein; hypothetical protein 3067569..3068345 Shewanella halifaxensis HAW-EB4 5906772 YP_001674753.1 CDS Shal_2537 NC_010334.1 3068608 3069864 D KEGG: shn:Shewana3_1721 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 3068608..3069864 Shewanella halifaxensis HAW-EB4 5906566 YP_001674754.1 CDS Shal_2538 NC_010334.1 3069972 3070286 D KEGG: saz:Sama_1538 hypothetical protein; hypothetical protein 3069972..3070286 Shewanella halifaxensis HAW-EB4 5906567 YP_001674755.1 CDS Shal_2539 NC_010334.1 3070369 3071316 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: sbm:Shew185_2498 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(3070369..3071316) Shewanella halifaxensis HAW-EB4 5905918 YP_001674756.1 CDS Shal_2540 NC_010334.1 3071426 3071791 R KEGG: slo:Shew_2354 hypothetical protein; hypothetical protein complement(3071426..3071791) Shewanella halifaxensis HAW-EB4 5905919 YP_001674757.1 CDS Shal_2541 NC_010334.1 3071938 3072612 D KEGG: shw:Sputw3181_2412 hypothetical protein; hypothetical protein 3071938..3072612 Shewanella halifaxensis HAW-EB4 5904601 YP_001674758.1 CDS Shal_2542 NC_010334.1 3072690 3073667 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_0957 HTH-type transcriptional regulator XapR; LysR family transcriptional regulator complement(3072690..3073667) Shewanella halifaxensis HAW-EB4 5904602 YP_001674759.1 CDS Shal_2543 NC_010334.1 3073837 3074703 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 3073837..3074703 Shewanella halifaxensis HAW-EB4 5906078 YP_001674760.1 CDS Shal_2544 NC_010334.1 3074716 3075978 D TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: aha:AHA_0959 nucleoside permease; nucleoside transporter 3074716..3075978 Shewanella halifaxensis HAW-EB4 5906079 YP_001674761.1 CDS Shal_2545 NC_010334.1 3076038 3076916 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: aha:AHA_0961 hypothetical protein; hypothetical protein 3076038..3076916 Shewanella halifaxensis HAW-EB4 5905429 YP_001674762.1 CDS Shal_2547 NC_010334.1 3083933 3084472 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(3083933..3084472) Shewanella halifaxensis HAW-EB4 5905438 YP_001674763.1 CDS Shal_2548 NC_010334.1 3084662 3085966 D PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: slo:Shew_2358 peptidase M24; peptidase M24 3084662..3085966 Shewanella halifaxensis HAW-EB4 5906114 YP_001674764.1 CDS Shal_2549 NC_010334.1 3086141 3087421 D PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: lpf:lpl0333 hypothetical protein; amino acid permease 3086141..3087421 Shewanella halifaxensis HAW-EB4 5906161 YP_001674765.1 CDS Shal_2550 NC_010334.1 3087596 3087820 R KEGG: pin:Ping_1766 hypothetical protein; hypothetical protein complement(3087596..3087820) Shewanella halifaxensis HAW-EB4 5906162 YP_001674766.1 CDS Shal_2551 NC_010334.1 3088094 3089623 D KEGG: ana:alr4631 unknown protein; hypothetical protein 3088094..3089623 Shewanella halifaxensis HAW-EB4 5906474 YP_001674767.1 CDS Shal_2552 NC_010334.1 3089657 3090907 D KEGG: sde:Sde_2468 amine oxidase, flavin-containing; NAD/FAD-binding protein-like protein 3089657..3090907 Shewanella halifaxensis HAW-EB4 5906475 YP_001674768.1 CDS Shal_2553 NC_010334.1 3091195 3092460 R PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_2360 D-amino-acid dehydrogenase; FAD dependent oxidoreductase complement(3091195..3092460) Shewanella halifaxensis HAW-EB4 5906480 YP_001674769.1 CDS Shal_2554 NC_010334.1 3092491 3093669 R PFAM: proline racemase; KEGG: slo:Shew_2361 proline racemase; proline racemase complement(3092491..3093669) Shewanella halifaxensis HAW-EB4 5906481 YP_001674770.1 CDS Shal_2555 NC_010334.1 3093709 3094623 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: slo:Shew_2362 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3093709..3094623 Shewanella halifaxensis HAW-EB4 5906057 YP_001674771.1 CDS Shal_2556 NC_010334.1 3094736 3095737 D PFAM: proline racemase; KEGG: slo:Shew_2363 proline racemase; hydroxyproline-2-epimerase 3094736..3095737 Shewanella halifaxensis HAW-EB4 5906058 YP_001674772.1 CDS Shal_2557 NC_010334.1 3095780 3097345 D PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_2364 aldehyde dehydrogenase; aldehyde dehydrogenase 3095780..3097345 Shewanella halifaxensis HAW-EB4 5905744 YP_001674773.1 CDS Shal_2558 NC_010334.1 3097452 3098123 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: slo:Shew_2365 transcriptional regulator, GntR family; GntR family transcriptional regulator 3097452..3098123 Shewanella halifaxensis HAW-EB4 5905745 YP_001674774.1 CDS Shal_2559 NC_010334.1 3098223 3099287 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 3098223..3099287 Shewanella halifaxensis HAW-EB4 5905553 YP_001674775.1 CDS Shal_2560 NC_010334.1 3099393 3099977 R KEGG: slo:Shew_2367 hypothetical protein; hypothetical protein complement(3099393..3099977) Shewanella halifaxensis HAW-EB4 5905554 YP_001674776.1 CDS Shal_2561 NC_010334.1 3100268 3100804 D PFAM: Heme NO binding domain protein; KEGG: vfi:VFA0071 hypothetical protein; heme NO-binding domain-containing protein 3100268..3100804 Shewanella halifaxensis HAW-EB4 5905456 YP_001674777.1 CDS Shal_2562 NC_010334.1 3100819 3102558 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vfi:VFA0072 sensor protein LuxQ; histidine kinase 3100819..3102558 Shewanella halifaxensis HAW-EB4 5905457 YP_001674778.1 CDS Shal_2563 NC_010334.1 3102580 3103197 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III complement(3102580..3103197) Shewanella halifaxensis HAW-EB4 5905508 YP_001674779.1 CDS Shal_2564 NC_010334.1 3103315 3105162 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: slo:Shew_2369 cyclic nucleotide-binding protein; hypothetical protein complement(3103315..3105162) Shewanella halifaxensis HAW-EB4 5905509 YP_001674780.1 CDS Shal_2565 NC_010334.1 3105302 3107020 R PFAM: Na+/solute symporter; KEGG: slo:Shew_2371 Na+/solute symporter; Na+/solute symporter complement(3105302..3107020) Shewanella halifaxensis HAW-EB4 5905582 YP_001674781.1 CDS Shal_2566 NC_010334.1 3107060 3107326 R KEGG: slo:Shew_2372 hypothetical protein; hypothetical protein complement(3107060..3107326) Shewanella halifaxensis HAW-EB4 5905583 YP_001674782.1 CDS Shal_2567 NC_010334.1 3108026 3108919 R SMART: protein phosphatase 2C domain protein; KEGG: stt:t4521 hypothetical protein; protein serine/threonine phosphatase complement(3108026..3108919) Shewanella halifaxensis HAW-EB4 5903372 YP_001674783.1 CDS Shal_2568 NC_010334.1 3109067 3110008 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_3322 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein complement(3109067..3110008) Shewanella halifaxensis HAW-EB4 5903373 YP_001674784.1 CDS Shal_2569 NC_010334.1 3110459 3111868 D KEGG: vpa:VPA0754 hypothetical protein; hypothetical protein 3110459..3111868 Shewanella halifaxensis HAW-EB4 5904762 YP_001674785.1 CDS Shal_2570 NC_010334.1 3112191 3112670 D PFAM: PEBP family protein; KEGG: aeh:Mlg_1616 YbhB and YbcL; PEBP family protein 3112191..3112670 Shewanella halifaxensis HAW-EB4 5904763 YP_001674786.1 CDS Shal_2571 NC_010334.1 3112919 3113557 R PFAM: DSBA oxidoreductase; KEGG: son:SO_2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase complement(3112919..3113557) Shewanella halifaxensis HAW-EB4 5904767 YP_001674787.1 CDS Shal_2572 NC_010334.1 3113598 3114440 R KEGG: slo:Shew_2374 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3113598..3114440) Shewanella halifaxensis HAW-EB4 5904768 YP_001674788.1 CDS Shal_2573 NC_010334.1 3114544 3115740 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: shn:Shewana3_1571 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(3114544..3115740) Shewanella halifaxensis HAW-EB4 5903532 YP_001674789.1 CDS Shal_2574 NC_010334.1 3116277 3116795 R KEGG: slo:Shew_2376 hypothetical protein; hypothetical protein complement(3116277..3116795) Shewanella halifaxensis HAW-EB4 5903533 YP_001674790.1 CDS Shal_2575 NC_010334.1 3116944 3118947 R KEGG: slo:Shew_2377 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(3116944..3118947) Shewanella halifaxensis HAW-EB4 5903723 YP_001674791.1 CDS Shal_2576 NC_010334.1 3119105 3120025 R TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: slo:Shew_2378 cell division protein ZipA; cell division protein ZipA complement(3119105..3120025) Shewanella halifaxensis HAW-EB4 5903724 YP_001674792.1 CDS Shal_2577 NC_010334.1 3120049 3123480 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: slo:Shew_2379 chromosome segregation protein SMC; chromosome segregation protein SMC complement(3120049..3123480) Shewanella halifaxensis HAW-EB4 5904172 YP_001674793.1 CDS Shal_2578 NC_010334.1 3123698 3124471 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 3123698..3124471 Shewanella halifaxensis HAW-EB4 5904173 YP_001674794.1 CDS Shal_2579 NC_010334.1 3124625 3125872 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: saz:Sama_1511 response regulator receiver protein; response regulator receiver modulated diguanylate cyclase complement(3124625..3125872) Shewanella halifaxensis HAW-EB4 5904147 YP_001674795.1 CDS Shal_2580 NC_010334.1 3126071 3127411 R PFAM: RDD domain containing protein; KEGG: shn:Shewana3_1562 RDD domain containing protein; RDD domain-containing protein complement(3126071..3127411) Shewanella halifaxensis HAW-EB4 5904148 YP_001674796.1 CDS Shal_2581 NC_010334.1 3127650 3128618 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: slo:Shew_2382 cysteine synthase A; cysteine synthase A 3127650..3128618 Shewanella halifaxensis HAW-EB4 5904087 YP_001674797.1 CDS Shal_2582 NC_010334.1 3128651 3129328 R PFAM: regulatory protein TetR; KEGG: slo:Shew_2383 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3128651..3129328) Shewanella halifaxensis HAW-EB4 5904088 YP_001674798.1 CDS Shal_2583 NC_010334.1 3129502 3130575 D KEGG: sfr:Sfri_2128 O-methyltransferase, putative; O-methyltransferase 3129502..3130575 Shewanella halifaxensis HAW-EB4 5904065 YP_001674799.1 CDS Shal_2584 NC_010334.1 3130878 3131864 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shw:Sputw3181_1637 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 3130878..3131864 Shewanella halifaxensis HAW-EB4 5904066 YP_001674800.1 CDS Shal_2585 NC_010334.1 3132372 3135080 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_2385 TonB-dependent receptor, plug; TonB-dependent receptor plug 3132372..3135080 Shewanella halifaxensis HAW-EB4 5904035 YP_001674801.1 CDS Shal_2586 NC_010334.1 3135155 3136699 R PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shn:Shewana3_1557 C4-dicarboxylate anaerobic carrier; hypothetical protein complement(3135155..3136699) Shewanella halifaxensis HAW-EB4 5904036 YP_001674802.1 CDS panF NC_010334.1 3136778 3138220 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(3136778..3138220) Shewanella halifaxensis HAW-EB4 5903974 YP_001674803.1 CDS Shal_2588 NC_010334.1 3138213 3138389 R KEGG: dps:DP0461 hypothetical protein; hypothetical protein complement(3138213..3138389) Shewanella halifaxensis HAW-EB4 5903975 YP_001674804.1 CDS Shal_2589 NC_010334.1 3138844 3139749 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1634 transcriptional regulator, LysR family; LysR family transcriptional regulator 3138844..3139749 Shewanella halifaxensis HAW-EB4 5903696 YP_001674805.1 CDS Shal_2590 NC_010334.1 3139804 3141285 R PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: shw:Sputw3181_1633 formate/nitrite transporter; formate/nitrite transporter complement(3139804..3141285) Shewanella halifaxensis HAW-EB4 5903697 YP_001674806.1 CDS Shal_2591 NC_010334.1 3142208 3143740 D KEGG: slo:Shew_2389 hypothetical protein; hypothetical protein 3142208..3143740 Shewanella halifaxensis HAW-EB4 5903850 YP_001674807.1 CDS Shal_2592 NC_010334.1 3144304 3146586 D KEGG: slo:Shew_2390 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase 3144304..3146586 Shewanella halifaxensis HAW-EB4 5903851 YP_001674808.1 CDS pflA NC_010334.1 3146651 3147391 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 3146651..3147391 Shewanella halifaxensis HAW-EB4 5903902 YP_001674809.1 CDS Shal_2594 NC_010334.1 3147426 3147869 R PFAM: protein of unknown function DUF412; KEGG: son:SO_2914 hypothetical protein; hypothetical protein complement(3147426..3147869) Shewanella halifaxensis HAW-EB4 5903903 YP_001674810.1 CDS Shal_2595 NC_010334.1 3148065 3149261 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 3148065..3149261 Shewanella halifaxensis HAW-EB4 5903919 YP_001674811.1 CDS Shal_2596 NC_010334.1 3149368 3151515 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 3149368..3151515 Shewanella halifaxensis HAW-EB4 5903920 YP_001674812.1 CDS Shal_2597 NC_010334.1 3151587 3151937 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pin:Ping_1714 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(3151587..3151937) Shewanella halifaxensis HAW-EB4 5906897 YP_001674813.1 CDS Shal_2598 NC_010334.1 3152438 3152950 D KEGG: shn:Shewana3_1548 hypothetical protein; hypothetical protein 3152438..3152950 Shewanella halifaxensis HAW-EB4 5906898 YP_001674814.1 CDS Shal_2599 NC_010334.1 3153548 3154456 R KEGG: son:SO_2919 hypothetical protein; hypothetical protein complement(3153548..3154456) Shewanella halifaxensis HAW-EB4 5905417 YP_001674815.1 CDS Shal_2600 NC_010334.1 3154462 3155613 R PFAM: protein of unknown function UPF0118; KEGG: slo:Shew_2398 protein of unknown function UPF0118; hypothetical protein complement(3154462..3155613) Shewanella halifaxensis HAW-EB4 5905418 YP_001674816.1 CDS folX NC_010334.1 3155700 3156071 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3155700..3156071 Shewanella halifaxensis HAW-EB4 5905402 YP_001674817.1 CDS Shal_2602 NC_010334.1 3156138 3157043 D PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: sfr:Sfri_2559 hypothetical protein; hypothetical protein 3156138..3157043 Shewanella halifaxensis HAW-EB4 5905403 YP_001674818.1 CDS Shal_2603 NC_010334.1 3157138 3159591 R PFAM: protein of unknown function DUF214; KEGG: sbm:Shew185_2707 protein of unknown function DUF214; hypothetical protein complement(3157138..3159591) Shewanella halifaxensis HAW-EB4 5905000 YP_001674819.1 CDS Shal_2604 NC_010334.1 3159582 3160310 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2402 ABC transporter-related protein; ABC transporter-like protein complement(3159582..3160310) Shewanella halifaxensis HAW-EB4 5905001 YP_001674820.1 CDS Shal_2605 NC_010334.1 3160360 3160920 D PFAM: lipolytic protein G-D-S-L family; KEGG: sfr:Sfri_2568 arylesterase; arylesterase 3160360..3160920 Shewanella halifaxensis HAW-EB4 5904944 YP_001674821.1 CDS Shal_2606 NC_010334.1 3161040 3162164 D KEGG: saz:Sama_1484 hypothetical protein; hypothetical protein 3161040..3162164 Shewanella halifaxensis HAW-EB4 5904945 YP_001674822.1 CDS Shal_2607 NC_010334.1 3162582 3165236 D KEGG: slo:Shew_2404 hypothetical protein; hypothetical protein 3162582..3165236 Shewanella halifaxensis HAW-EB4 5904017 YP_001674823.1 CDS Shal_2608 NC_010334.1 3165364 3166554 D KEGG: shm:Shewmr7_1538 hypothetical protein; hypothetical protein 3165364..3166554 Shewanella halifaxensis HAW-EB4 5904018 YP_001674824.1 CDS Shal_2609 NC_010334.1 3166590 3167633 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: son:SO_2932 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3166590..3167633) Shewanella halifaxensis HAW-EB4 5903900 YP_001674825.1 CDS Shal_2610 NC_010334.1 3168062 3168823 D PFAM: Methyltransferase type 12; KEGG: sdn:Sden_0896 methyltransferase type 11; type 12 methyltransferase 3168062..3168823 Shewanella halifaxensis HAW-EB4 5903901 YP_001674826.1 CDS Shal_2611 NC_010334.1 3169169 3170692 D PFAM: Integrase catalytic region; KEGG: kpn:KPN_pKPN3p05906 Sea24; integrase catalytic subunit 3169169..3170692 Shewanella halifaxensis HAW-EB4 5903836 YP_001674827.1 CDS Shal_2612 NC_010334.1 3171168 3172196 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(3171168..3172196) Shewanella halifaxensis HAW-EB4 5903837 YP_001674828.1 CDS Shal_2613 NC_010334.1 3172335 3174833 R KEGG: slo:Shew_2408 hypothetical protein; hypothetical protein complement(3172335..3174833) Shewanella halifaxensis HAW-EB4 5903781 YP_001674829.1 CDS Shal_2614 NC_010334.1 3175095 3175832 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: slo:Shew_2409 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3175095..3175832 Shewanella halifaxensis HAW-EB4 5903782 YP_001674830.1 CDS Shal_2615 NC_010334.1 3175964 3176836 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; pseudouridine synthase complement(3175964..3176836) Shewanella halifaxensis HAW-EB4 5904217 YP_001674831.1 CDS Shal_2616 NC_010334.1 3176829 3177425 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: sbm:Shew185_2718 putative transcriptional regulator; segregation and condensation protein B complement(3176829..3177425) Shewanella halifaxensis HAW-EB4 5904218 YP_001674832.1 CDS Shal_2617 NC_010334.1 3177426 3178214 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: slo:Shew_2248 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(3177426..3178214) Shewanella halifaxensis HAW-EB4 5903832 YP_001674833.1 CDS Shal_2618 NC_010334.1 3178391 3179011 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: slo:Shew_2249 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(3178391..3179011) Shewanella halifaxensis HAW-EB4 5903833 YP_001674834.1 CDS Shal_2619 NC_010334.1 3179008 3179886 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: shw:Sputw3181_1606 PHP C-terminal domain protein; phosphotransferase domain-containing protein complement(3179008..3179886) Shewanella halifaxensis HAW-EB4 5904003 YP_001674835.1 CDS Shal_2620 NC_010334.1 3180096 3180533 R TIGRFAM: TonB family protein; KEGG: she:Shewmr4_3544 TonB family protein; TonB family protein complement(3180096..3180533) Shewanella halifaxensis HAW-EB4 5904004 YP_001674836.1 CDS Shal_2621 NC_010334.1 3180727 3181086 D hypothetical protein 3180727..3181086 Shewanella halifaxensis HAW-EB4 5905862 YP_001674837.1 CDS Shal_2622 NC_010334.1 3181560 3182105 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 3181560..3182105 Shewanella halifaxensis HAW-EB4 5905863 YP_001674838.1 CDS Shal_2623 NC_010334.1 3182105 3182404 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 3182105..3182404 Shewanella halifaxensis HAW-EB4 5902791 YP_001674839.1 CDS Shal_2624 NC_010334.1 3182422 3183228 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3182422..3183228 Shewanella halifaxensis HAW-EB4 5902792 YP_001674840.1 CDS Shal_2625 NC_010334.1 3183302 3184756 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_2263 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3183302..3184756) Shewanella halifaxensis HAW-EB4 5902682 YP_001674841.1 CDS Shal_2626 NC_010334.1 3184862 3185350 R PFAM: protein of unknown function DUF1097; KEGG: son:SO_3047 hypothetical protein; hypothetical protein complement(3184862..3185350) Shewanella halifaxensis HAW-EB4 5902683 YP_001674842.1 CDS Shal_2627 NC_010334.1 3185725 3186369 R PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_1500 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3185725..3186369) Shewanella halifaxensis HAW-EB4 5902694 YP_001674843.1 CDS Shal_2628 NC_010334.1 3186683 3187984 D PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_2270 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3186683..3187984 Shewanella halifaxensis HAW-EB4 5902695 YP_001674844.1 CDS Shal_2629 NC_010334.1 3188193 3188387 D KEGG: slo:Shew_2284 hypothetical protein; hypothetical protein 3188193..3188387 Shewanella halifaxensis HAW-EB4 5902877 YP_001674845.1 CDS Shal_2630 NC_010334.1 3188388 3189452 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(3188388..3189452) Shewanella halifaxensis HAW-EB4 5902878 YP_001674846.1 CDS Shal_2631 NC_010334.1 3189832 3189966 D KEGG: vco:VC0395_0697 transcriptional regulator, LysR family; LysR family transcriptional regulator 3189832..3189966 Shewanella halifaxensis HAW-EB4 5906968 YP_001674847.1 CDS Shal_2632 NC_010334.1 3190216 3192087 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: sbl:Sbal_0193 methyl-accepting chemotaxis sensory transducer; Cache sensor containing methyl-accepting chemotaxis sensory transducer 3190216..3192087 Shewanella halifaxensis HAW-EB4 5906969 YP_001674848.1 CDS Shal_2634 NC_010334.1 3192483 3194543 R KEGG: slo:Shew_2294 hypothetical protein; hypothetical protein complement(3192483..3194543) Shewanella halifaxensis HAW-EB4 5906396 YP_001674849.1 CDS Shal_2635 NC_010334.1 3194757 3195635 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: slo:Shew_2295 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3194757..3195635) Shewanella halifaxensis HAW-EB4 5907014 YP_001674850.1 CDS Shal_2636 NC_010334.1 3195843 3197879 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(3195843..3197879) Shewanella halifaxensis HAW-EB4 5907015 YP_001674851.1 CDS Shal_2637 NC_010334.1 3198108 3199622 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(3198108..3199622) Shewanella halifaxensis HAW-EB4 5905623 YP_001674852.1 CDS Shal_2638 NC_010334.1 3199721 3200209 R PFAM: Colicin V production protein; KEGG: sfr:Sfri_1398 colicin V production protein; colicin V production protein complement(3199721..3200209) Shewanella halifaxensis HAW-EB4 5905624 YP_001674853.1 CDS Shal_2639 NC_010334.1 3200325 3200954 R PFAM: Sporulation domain protein; KEGG: saz:Sama_2148 sporulation related; sporulation domain-containing protein complement(3200325..3200954) Shewanella halifaxensis HAW-EB4 5907028 YP_001674854.1 CDS Shal_2640 NC_010334.1 3200947 3202212 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: she:Shewmr4_1427 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(3200947..3202212) Shewanella halifaxensis HAW-EB4 5907029 YP_001674855.1 CDS truA NC_010334.1 3202310 3203095 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(3202310..3203095) Shewanella halifaxensis HAW-EB4 5906521 YP_001674856.1 CDS Shal_2642 NC_010334.1 3203260 3206358 R KEGG: sbm:Shew185_2760 hypothetical protein; hypothetical protein complement(3203260..3206358) Shewanella halifaxensis HAW-EB4 5906522 YP_001674857.1 CDS Shal_2643 NC_010334.1 3206538 3207554 R KEGG: slo:Shew_2308 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase complement(3206538..3207554) Shewanella halifaxensis HAW-EB4 5905882 YP_001674858.1 CDS Shal_2644 NC_010334.1 3207557 3208687 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbm:Shew185_2762 D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit complement(3207557..3208687) Shewanella halifaxensis HAW-EB4 5905883 YP_001674859.1 CDS Shal_2645 NC_010334.1 3209024 3209620 D KEGG: mxa:MXAN_5404 hypothetical protein; hypothetical protein 3209024..3209620 Shewanella halifaxensis HAW-EB4 5904954 YP_001674860.1 CDS Shal_2647 NC_010334.1 3210546 3211469 R PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: eca:ECA2039 putative ornithine cyclodeaminase; ornithine cyclodeaminase complement(3210546..3211469) Shewanella halifaxensis HAW-EB4 5904487 YP_001674861.1 CDS Shal_2648 NC_010334.1 3211471 3212637 R KEGG: eca:ECA2038 hypothetical protein; hypothetical protein complement(3211471..3212637) Shewanella halifaxensis HAW-EB4 5904488 YP_001674862.1 CDS Shal_2649 NC_010334.1 3212836 3213774 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_412GM hypothetical protein; LysR family transcriptional regulator 3212836..3213774 Shewanella halifaxensis HAW-EB4 5904850 YP_001674863.1 CDS Shal_2650 NC_010334.1 3214000 3214419 D PFAM: NUDIX hydrolase; KEGG: vha:VIBHAR_06029 hypothetical protein; NUDIX hydrolase 3214000..3214419 Shewanella halifaxensis HAW-EB4 5904851 YP_001674864.1 CDS Shal_2651 NC_010334.1 3214556 3216280 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; diguanylate cyclase/phosphodiesterase complement(3214556..3216280) Shewanella halifaxensis HAW-EB4 5905480 YP_001674865.1 CDS Shal_2652 NC_010334.1 3216285 3217289 R PFAM: ATP-binding region ATPase domain protein; KEGG: vvy:VVA0582 anti-sigma regulatory factor; putative anti-sigma regulatory factor complement(3216285..3217289) Shewanella halifaxensis HAW-EB4 5905481 YP_001674866.1 CDS Shal_2653 NC_010334.1 3217289 3217717 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: fal:FRAAL1275 positive regulator of sigma-B; anti-sigma-factor antagonist complement(3217289..3217717) Shewanella halifaxensis HAW-EB4 5905335 YP_001674867.1 CDS Shal_2654 NC_010334.1 3218359 3219633 R PFAM: Beta-ketoacyl synthase; KEGG: slo:Shew_2410 beta-ketoacyl synthase; beta-ketoacyl synthase complement(3218359..3219633) Shewanella halifaxensis HAW-EB4 5905336 YP_001674868.1 CDS Shal_2655 NC_010334.1 3219801 3221711 D PFAM: FAD dependent oxidoreductase; KEGG: shn:Shewana3_1474 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3219801..3221711 Shewanella halifaxensis HAW-EB4 5905074 YP_001674869.1 CDS Shal_2656 NC_010334.1 3221826 3222350 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: slo:Shew_2412 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(3221826..3222350) Shewanella halifaxensis HAW-EB4 5905075 YP_001674870.1 CDS Shal_2657 NC_010334.1 3222421 3222690 R PFAM: YfcL protein; KEGG: shw:Sputw3181_1560 hypothetical protein; hypothetical protein complement(3222421..3222690) Shewanella halifaxensis HAW-EB4 5904284 YP_001674871.1 CDS Shal_2658 NC_010334.1 3222844 3223965 R PFAM: ATP-NAD/AcoX kinase; KEGG: sbm:Shew185_2767 ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase complement(3222844..3223965) Shewanella halifaxensis HAW-EB4 5904285 YP_001674872.1 CDS Shal_2659 NC_010334.1 3224009 3225163 R PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbm:Shew185_2768 major facilitator superfamily MFS_1; major facilitator transporter complement(3224009..3225163) Shewanella halifaxensis HAW-EB4 5904359 YP_001674873.1 CDS Shal_2660 NC_010334.1 3225163 3226257 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3225163..3226257) Shewanella halifaxensis HAW-EB4 5904360 YP_001674874.1 CDS Shal_2661 NC_010334.1 3226407 3227351 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3226407..3227351) Shewanella halifaxensis HAW-EB4 5903025 YP_001674875.1 CDS Shal_2662 NC_010334.1 3227431 3227961 D PFAM: Smr protein/MutS2; KEGG: slo:Shew_2418 Smr protein/MutS2; hypothetical protein 3227431..3227961 Shewanella halifaxensis HAW-EB4 5903026 YP_001674876.1 CDS Shal_2663 NC_010334.1 3228057 3228527 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA complement(3228057..3228527) Shewanella halifaxensis HAW-EB4 5906767 YP_001674877.1 CDS Shal_2664 NC_010334.1 3228884 3231673 D PFAM: peptidase M16 domain protein; KEGG: slo:Shew_2420 peptidase M16 domain protein; peptidase M16 domain-containing protein 3228884..3231673 Shewanella halifaxensis HAW-EB4 5906768 YP_001674878.1 CDS Shal_2665 NC_010334.1 3231979 3236265 D KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3231979..3236265 Shewanella halifaxensis HAW-EB4 5903200 YP_001674879.1 CDS Shal_2666 NC_010334.1 3236364 3237560 D KEGG: shw:Sputw3181_1551 hypothetical protein; hypothetical protein 3236364..3237560 Shewanella halifaxensis HAW-EB4 5903201 YP_001674880.1 CDS Shal_2668 NC_010334.1 3237724 3237840 D KEGG: sbm:Shew185_2776 hypothetical protein; hypothetical protein 3237724..3237840 Shewanella halifaxensis HAW-EB4 5906644 YP_001674881.1 CDS Shal_2669 NC_010334.1 3237976 3238176 R KEGG: slo:Shew_2424 hypothetical protein; hypothetical protein complement(3237976..3238176) Shewanella halifaxensis HAW-EB4 5902950 YP_001674882.1 CDS fadJ NC_010334.1 3238430 3240556 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(3238430..3240556) Shewanella halifaxensis HAW-EB4 5902951 YP_001674883.1 CDS fadI NC_010334.1 3240561 3241871 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(3240561..3241871) Shewanella halifaxensis HAW-EB4 5906132 YP_001674884.1 CDS Shal_2672 NC_010334.1 3242288 3243244 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sbm:Shew185_2782 ATPase associated with various cellular activities AAA_3; ATPase 3242288..3243244 Shewanella halifaxensis HAW-EB4 5906133 YP_001674885.1 CDS Shal_2673 NC_010334.1 3243244 3244173 D PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1470 protein of unknown function DUF58; hypothetical protein 3243244..3244173 Shewanella halifaxensis HAW-EB4 5902905 YP_001674886.1 CDS Shal_2674 NC_010334.1 3244174 3244692 D KEGG: slo:Shew_2429 hypothetical protein; hypothetical protein 3244174..3244692 Shewanella halifaxensis HAW-EB4 5902906 YP_001674887.1 CDS Shal_2675 NC_010334.1 3244686 3245723 D PFAM: von Willebrand factor type A; KEGG: son:SO_3093 von Willebrand factor type A domain protein; von Willebrand factor type A 3244686..3245723 Shewanella halifaxensis HAW-EB4 5902998 YP_001674888.1 CDS Shal_2676 NC_010334.1 3245726 3247744 D PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_1402 tetratricopeptide TPR_2 repeat protein; hypothetical protein 3245726..3247744 Shewanella halifaxensis HAW-EB4 5902999 YP_001674889.1 CDS Shal_2677 NC_010334.1 3247738 3249366 D KEGG: sbm:Shew185_2787 hypothetical protein; hypothetical protein 3247738..3249366 Shewanella halifaxensis HAW-EB4 5903180 YP_001674890.1 CDS Shal_2678 NC_010334.1 3249951 3250514 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3249951..3250514 Shewanella halifaxensis HAW-EB4 5903181 YP_001674891.1 CDS Shal_2679 NC_010334.1 3250507 3251211 D KEGG: slo:Shew_2434 hypothetical protein; hypothetical protein 3250507..3251211 Shewanella halifaxensis HAW-EB4 5906956 YP_001674892.1 CDS Shal_2680 NC_010334.1 3251352 3252803 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: slo:Shew_2435 sodium/proline symporter; sodium/proline symporter 3251352..3252803 Shewanella halifaxensis HAW-EB4 5906957 YP_001674893.1 CDS Shal_2681 NC_010334.1 3253073 3254452 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: slo:Shew_2436 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3253073..3254452 Shewanella halifaxensis HAW-EB4 5902976 YP_001674894.1 CDS Shal_2682 NC_010334.1 3254638 3255354 D PFAM: protein of unknown function DUF541; KEGG: shw:Sputw3181_1536 protein of unknown function DUF541; hypothetical protein 3254638..3255354 Shewanella halifaxensis HAW-EB4 5902977 YP_001674895.1 CDS Shal_2683 NC_010334.1 3255554 3256591 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbm:Shew185_2794 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3255554..3256591 Shewanella halifaxensis HAW-EB4 5903794 YP_001674896.1 CDS Shal_2684 NC_010334.1 3256627 3259836 D PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1458 acriflavin resistance protein; acriflavin resistance protein 3256627..3259836 Shewanella halifaxensis HAW-EB4 5903795 YP_001674897.1 CDS Shal_2685 NC_010334.1 3259923 3260141 D KEGG: sbm:Shew185_2796 hypothetical protein; hypothetical protein 3259923..3260141 Shewanella halifaxensis HAW-EB4 5907031 YP_001674898.1 CDS Shal_2686 NC_010334.1 3260166 3260561 D PFAM: Rhodanese domain protein; KEGG: shn:Shewana3_1444 rhodanese domain protein; rhodanese domain-containing protein 3260166..3260561 Shewanella halifaxensis HAW-EB4 5907032 YP_001674899.1 CDS Shal_2687 NC_010334.1 3260705 3261022 D KEGG: shw:Sputw3181_2553 hypothetical protein; hypothetical protein 3260705..3261022 Shewanella halifaxensis HAW-EB4 5904353 YP_001674900.1 CDS Shal_2688 NC_010334.1 3261095 3261901 R KEGG: sfr:Sfri_2437 hypothetical protein; hypothetical protein complement(3261095..3261901) Shewanella halifaxensis HAW-EB4 5904354 YP_001674901.1 CDS ribA NC_010334.1 3262000 3262629 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(3262000..3262629) Shewanella halifaxensis HAW-EB4 5905110 YP_001674902.1 CDS Shal_2690 NC_010334.1 3262844 3263200 R KEGG: sdn:Sden_1446 hypothetical protein; hypothetical protein complement(3262844..3263200) Shewanella halifaxensis HAW-EB4 5905111 YP_001674903.1 CDS Shal_2691 NC_010334.1 3263333 3263797 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: slo:Shew_2448 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(3263333..3263797) Shewanella halifaxensis HAW-EB4 5906180 YP_001674904.1 CDS Shal_2692 NC_010334.1 3263900 3266017 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3263900..3266017) Shewanella halifaxensis HAW-EB4 5906181 YP_001674905.1 CDS Shal_2693 NC_010334.1 3266272 3266958 R KEGG: sbm:Shew185_1649 hypothetical protein; hypothetical protein complement(3266272..3266958) Shewanella halifaxensis HAW-EB4 5906199 YP_001674906.1 CDS Shal_2694 NC_010334.1 3267299 3268276 R PFAM: Patatin; KEGG: son:SO_2836 hypothetical protein; patatin complement(3267299..3268276) Shewanella halifaxensis HAW-EB4 5906200 YP_001674907.1 CDS Shal_2695 NC_010334.1 3268572 3269948 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_2452 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3268572..3269948 Shewanella halifaxensis HAW-EB4 5906253 YP_001674908.1 CDS Shal_2696 NC_010334.1 3270260 3270703 D KEGG: slo:Shew_2453 hypothetical protein; hypothetical protein 3270260..3270703 Shewanella halifaxensis HAW-EB4 5906254 YP_001674909.1 CDS Shal_2697 NC_010334.1 3270788 3271294 D PFAM: protein of unknown function DUF45; KEGG: son:SO_2840 hypothetical protein; hypothetical protein 3270788..3271294 Shewanella halifaxensis HAW-EB4 5906293 YP_001674910.1 CDS Shal_2698 NC_010334.1 3271436 3271837 D KEGG: sbl:Sbal_1657 hypothetical protein; hypothetical protein 3271436..3271837 Shewanella halifaxensis HAW-EB4 5906294 YP_001674911.1 CDS Shal_2699 NC_010334.1 3272550 3273926 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pde:Pden_3115 protein of unknown function DUF21; hypothetical protein 3272550..3273926 Shewanella halifaxensis HAW-EB4 5906411 YP_001674912.1 CDS Shal_2700 NC_010334.1 3273923 3274939 D PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: pde:Pden_3114 protein of unknown function DUF21; hypothetical protein 3273923..3274939 Shewanella halifaxensis HAW-EB4 5906412 YP_001674913.1 CDS Shal_2701 NC_010334.1 3275294 3275953 D PFAM: 60 kDa inner membrane insertion protein; KEGG: cps:CPS_3020 hypothetical protein; 60 kDa inner membrane insertion protein 3275294..3275953 Shewanella halifaxensis HAW-EB4 5906547 YP_001674914.1 CDS Shal_2702 NC_010334.1 3276380 3277636 R PFAM: peptidase M23B; Opacity-associated protein A; KEGG: slo:Shew_2455 peptidase M23B; peptidase M23B complement(3276380..3277636) Shewanella halifaxensis HAW-EB4 5906548 YP_001674915.1 CDS Shal_2703 NC_010334.1 3277897 3280953 R PFAM: SMC domain protein; KEGG: shm:Shewmr7_2519 SMC domain protein; SMC domain-containing protein complement(3277897..3280953) Shewanella halifaxensis HAW-EB4 5906736 YP_001674916.1 CDS Shal_2704 NC_010334.1 3280950 3282095 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sbl:Sbal_1654 nuclease SbcCD, D subunit; nuclease SbcCD subunit D complement(3280950..3282095) Shewanella halifaxensis HAW-EB4 5906737 YP_001674917.1 CDS avtA NC_010334.1 3282450 3283694 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3282450..3283694 Shewanella halifaxensis HAW-EB4 5906749 YP_001674918.1 CDS Shal_2706 NC_010334.1 3283908 3285086 R PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_3526 putative transport; hypothetical protein complement(3283908..3285086) Shewanella halifaxensis HAW-EB4 5906750 YP_001674919.1 CDS Shal_2707 NC_010334.1 3285666 3286220 R KEGG: kpn:KPN_pKPN3p05879 hypothetical protein; hypothetical protein complement(3285666..3286220) Shewanella halifaxensis HAW-EB4 5906825 YP_001674920.1 CDS Shal_2708 NC_010334.1 3286801 3288315 D PFAM: amino acid permease-associated region; KEGG: yen:YE3692 putative amino acid permease; amino acid permease 3286801..3288315 Shewanella halifaxensis HAW-EB4 5906826 YP_001674921.1 CDS Shal_2709 NC_010334.1 3288335 3289270 D catalyzes the formation of glutamate from glutamine; glutaminase 3288335..3289270 Shewanella halifaxensis HAW-EB4 5906960 YP_001674922.1 CDS Shal_2710 NC_010334.1 3289469 3290326 R PFAM: penicillin-binding protein transpeptidase; KEGG: syn:slr0319 beta-lactamase; beta-lactamase complement(3289469..3290326) Shewanella halifaxensis HAW-EB4 5906961 YP_001674923.1 CDS Shal_2711 NC_010334.1 3290354 3291133 R PFAM: protein of unknown function DUF81; KEGG: pin:Ping_1433 permease with 5 transmembrane domains; hypothetical protein complement(3290354..3291133) Shewanella halifaxensis HAW-EB4 5902688 YP_001674924.1 CDS Shal_2712 NC_010334.1 3291254 3292144 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2570 transcriptional regulator, LysR family; LysR family transcriptional regulator 3291254..3292144 Shewanella halifaxensis HAW-EB4 5902689 YP_001674925.1 CDS Shal_2713 NC_010334.1 3292187 3294160 R PFAM: NERD domain protein; KEGG: slo:Shew_2466 hypothetical protein; serine/threonine protein kinase complement(3292187..3294160) Shewanella halifaxensis HAW-EB4 5906044 YP_001674926.1 CDS Shal_2714 NC_010334.1 3294277 3294663 R PFAM: protein of unknown function DUF1260; KEGG: slo:Shew_2467 protein of unknown function DUF1260; hypothetical protein complement(3294277..3294663) Shewanella halifaxensis HAW-EB4 5906045 YP_001674927.1 CDS Shal_2715 NC_010334.1 3294683 3294913 R PFAM: RNA-binding S4 domain protein; KEGG: sbm:Shew185_1635 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(3294683..3294913) Shewanella halifaxensis HAW-EB4 5902782 YP_001674928.1 CDS Shal_2716 NC_010334.1 3294992 3295525 R PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_2469 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3294992..3295525) Shewanella halifaxensis HAW-EB4 5902783 YP_001674929.1 CDS Shal_2717 NC_010334.1 3295559 3295837 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: slo:Shew_2470 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3295559..3295837) Shewanella halifaxensis HAW-EB4 5903117 YP_001674930.1 CDS Shal_2718 NC_010334.1 3295970 3297802 R PFAM: protein of unknown function DUF885; KEGG: slo:Shew_2471 protein of unknown function DUF885; hypothetical protein complement(3295970..3297802) Shewanella halifaxensis HAW-EB4 5903118 YP_001674931.1 CDS Shal_2719 NC_010334.1 3297879 3298385 D PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2472 diguanylate cyclase; diguanylate cyclase 3297879..3298385 Shewanella halifaxensis HAW-EB4 5903164 YP_001674932.1 CDS Shal_2720 NC_010334.1 3298459 3299706 R SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_2621 tetratricopeptide domain protein; tetratricopeptide domain-containing protein complement(3298459..3299706) Shewanella halifaxensis HAW-EB4 5903165 YP_001674933.1 CDS Shal_2721 NC_010334.1 3299709 3300329 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sbm:Shew185_1629 TonB family protein; TonB family protein complement(3299709..3300329) Shewanella halifaxensis HAW-EB4 5906599 YP_001674934.1 CDS Shal_2722 NC_010334.1 3300331 3300735 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbm:Shew185_1628 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3300331..3300735) Shewanella halifaxensis HAW-EB4 5906600 YP_001674935.1 CDS Shal_2723 NC_010334.1 3300749 3301231 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1627 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3300749..3301231) Shewanella halifaxensis HAW-EB4 5906895 YP_001674936.1 CDS Shal_2724 NC_010334.1 3301273 3302628 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: shn:Shewana3_2625 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3301273..3302628) Shewanella halifaxensis HAW-EB4 5906896 YP_001674937.1 CDS Shal_2725 NC_010334.1 3302628 3303410 R KEGG: saz:Sama_1254 hypothetical protein; hypothetical protein complement(3302628..3303410) Shewanella halifaxensis HAW-EB4 5903113 YP_001674938.1 CDS Shal_2726 NC_010334.1 3304304 3304528 D KEGG: sbm:Shew185_4156 transposase IS4 family protein; hypothetical protein 3304304..3304528 Shewanella halifaxensis HAW-EB4 5903114 YP_001674939.1 CDS Shal_2727 NC_010334.1 3304889 3307738 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_2427 TonB-dependent receptor, plug; TonB-dependent receptor complement(3304889..3307738) Shewanella halifaxensis HAW-EB4 5905569 YP_001674940.1 CDS Shal_2728 NC_010334.1 3308562 3309776 R PFAM: porin Gram-negative type; KEGG: slo:Shew_2481 porin, gram-negative type; porin complement(3308562..3309776) Shewanella halifaxensis HAW-EB4 5905570 YP_001674941.1 CDS Shal_2729 NC_010334.1 3310011 3312452 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95oC; DNA polymerase II complement(3310011..3312452) Shewanella halifaxensis HAW-EB4 5905638 YP_001674942.1 CDS dinG NC_010334.1 3312553 3314625 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 3312553..3314625 Shewanella halifaxensis HAW-EB4 5905639 YP_001674943.1 CDS Shal_2731 NC_010334.1 3314634 3315407 D PFAM: protein of unknown function DUF81; KEGG: slo:Shew_2484 protein of unknown function DUF81; hypothetical protein 3314634..3315407 Shewanella halifaxensis HAW-EB4 5902884 YP_001674944.1 CDS Shal_2732 NC_010334.1 3315404 3316066 D KEGG: slo:Shew_2485 primosomal replication protein N'', putative; primosomal replication protein N'' 3315404..3316066 Shewanella halifaxensis HAW-EB4 5902885 YP_001674945.1 CDS Shal_2733 NC_010334.1 3316076 3316786 D KEGG: sbm:Shew185_1615 hypothetical protein; hypothetical protein 3316076..3316786 Shewanella halifaxensis HAW-EB4 5905659 YP_001674946.1 CDS Shal_2734 NC_010334.1 3317177 3317434 D KEGG: shn:Shewana3_2635 hypothetical protein; hypothetical protein 3317177..3317434 Shewanella halifaxensis HAW-EB4 5905660 YP_001674947.1 CDS Shal_2735 NC_010334.1 3317648 3318583 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppr:PBPRA2526 hypothetical protein similar to lipase; alpha/beta hydrolase domain-containing protein complement(3317648..3318583) Shewanella halifaxensis HAW-EB4 5905577 YP_001674948.1 CDS Shal_2736 NC_010334.1 3318596 3319798 R PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_3168 major facilitator superfamily MFS_1; major facilitator transporter complement(3318596..3319798) Shewanella halifaxensis HAW-EB4 5905578 YP_001674949.1 CDS Shal_2737 NC_010334.1 3320048 3322198 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(3320048..3322198) Shewanella halifaxensis HAW-EB4 5905538 YP_001674950.1 CDS Shal_2738 NC_010334.1 3322284 3323492 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(3322284..3323492) Shewanella halifaxensis HAW-EB4 5905539 YP_001674951.1 CDS Shal_2739 NC_010334.1 3323684 3324883 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(3323684..3324883) Shewanella halifaxensis HAW-EB4 5904493 YP_001674952.1 CDS Shal_2740 NC_010334.1 3324907 3325326 R PFAM: MaoC domain protein dehydratase; KEGG: cbe:Cbei_3349 MaoC domain protein dehydratase; dehydratase complement(3324907..3325326) Shewanella halifaxensis HAW-EB4 5904494 YP_001674953.1 CDS Shal_2741 NC_010334.1 3325354 3326946 R PFAM: coenzyme A transferase; KEGG: amt:Amet_4532 coenzyme A transferase; coenzyme A transferase complement(3325354..3326946) Shewanella halifaxensis HAW-EB4 5902713 YP_001674954.1 CDS Shal_2742 NC_010334.1 3327337 3328662 R hypothetical protein complement(3327337..3328662) Shewanella halifaxensis HAW-EB4 5902714 YP_001674955.1 CDS Shal_2743 NC_010334.1 3328717 3329823 R PFAM: lipase class 2; KEGG: mxa:MXAN_0221 lipase; lipase class 2 complement(3328717..3329823) Shewanella halifaxensis HAW-EB4 5905144 YP_001674956.1 CDS Shal_2744 NC_010334.1 3329999 3330883 D PFAM: alpha/beta hydrolase fold; KEGG: btk:BT9727_3084 3-Oxoadipate enol-lactonase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein 3329999..3330883 Shewanella halifaxensis HAW-EB4 5905145 YP_001674957.1 CDS Shal_2745 NC_010334.1 3330901 3332457 D PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_0180 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3330901..3332457 Shewanella halifaxensis HAW-EB4 5902756 YP_001674958.1 CDS Shal_2746 NC_010334.1 3332616 3333566 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1563 hypothetical transcription regulator; LysR family transcriptional regulator complement(3332616..3333566) Shewanella halifaxensis HAW-EB4 5902757 YP_001674959.1 CDS Shal_2747 NC_010334.1 3333843 3334577 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ppr:PBPRB1562 hypothetical 3-oxoacyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 3333843..3334577 Shewanella halifaxensis HAW-EB4 5905134 YP_001674960.1 CDS Shal_2748 NC_010334.1 3334660 3335865 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3334660..3335865 Shewanella halifaxensis HAW-EB4 5905135 YP_001674961.1 CDS Shal_2749 NC_010334.1 3337020 3337334 R KEGG: slo:Shew_2489 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; helix-hairpin-helix repeat-containing competence protein ComEA complement(3337020..3337334) Shewanella halifaxensis HAW-EB4 5905096 YP_001674962.1 CDS Shal_2750 NC_010334.1 3337710 3339116 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: slo:Shew_2490 anion transporter; anion transporter 3337710..3339116 Shewanella halifaxensis HAW-EB4 5905012 YP_001674963.1 CDS Shal_2751 NC_010334.1 3339181 3340377 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: saz:Sama_1242 methionine gamma-lyase; cystathionine gamma-synthase complement(3339181..3340377) Shewanella halifaxensis HAW-EB4 5904959 YP_001674964.1 CDS Shal_2752 NC_010334.1 3340706 3341821 R PFAM: conserved hypothetical protein; KEGG: shm:Shewmr7_2546 conserved hypothetical protein 1620; hypothetical protein complement(3340706..3341821) Shewanella halifaxensis HAW-EB4 5904960 YP_001674965.1 CDS Shal_2753 NC_010334.1 3341866 3343311 R PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: slo:Shew_2493 protein of unknown function DUF463, YcjX family protein; hypothetical protein complement(3341866..3343311) Shewanella halifaxensis HAW-EB4 5904986 YP_001674966.1 CDS Shal_2754 NC_010334.1 3343403 3343795 R TIGRFAM: shock protein C; PFAM: PspC domain protein; KEGG: slo:Shew_2494 phage shock protein C, PspC; phage shock protein C complement(3343403..3343795) Shewanella halifaxensis HAW-EB4 5904987 YP_001674967.1 CDS pspB NC_010334.1 3343861 3344088 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(3343861..3344088) Shewanella halifaxensis HAW-EB4 5904992 YP_001674968.1 CDS Shal_2756 NC_010334.1 3344117 3344794 R TIGRFAM: shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA; phage shock protein A complement(3344117..3344794) Shewanella halifaxensis HAW-EB4 5904993 YP_001674969.1 CDS Shal_2757 NC_010334.1 3344972 3346048 D KEGG: slo:Shew_2497 sigma54 specific transcriptional regulator, fis family; TIGRFAM: Transcriptional activator PspF; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Fis family transcriptional regulator 3344972..3346048 Shewanella halifaxensis HAW-EB4 5904840 YP_001674970.1 CDS Shal_2758 NC_010334.1 3346113 3347741 D PFAM: extracellular solute-binding protein family 5; KEGG: shm:Shewmr7_2552 extracellular solute-binding protein, family 5; extracellular solute-binding protein 3346113..3347741 Shewanella halifaxensis HAW-EB4 5904841 YP_001674971.1 CDS Shal_2759 NC_010334.1 3347741 3348772 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3347741..3348772 Shewanella halifaxensis HAW-EB4 5903099 YP_001674972.1 CDS Shal_2760 NC_010334.1 3348759 3349649 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3348759..3349649 Shewanella halifaxensis HAW-EB4 5903100 YP_001674973.1 CDS Shal_2761 NC_010334.1 3349654 3350661 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: shm:Shewmr7_2555 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase 3349654..3350661 Shewanella halifaxensis HAW-EB4 5903107 YP_001674974.1 CDS Shal_2762 NC_010334.1 3350642 3351427 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_2556 ABC transporter related; ABC transporter-like protein 3350642..3351427 Shewanella halifaxensis HAW-EB4 5903108 YP_001674975.1 CDS Shal_2763 NC_010334.1 3351608 3352810 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3351608..3352810 Shewanella halifaxensis HAW-EB4 5903143 YP_001674976.1 CDS Shal_2764 NC_010334.1 3353174 3355039 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: slo:Shew_2504 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3353174..3355039) Shewanella halifaxensis HAW-EB4 5903144 YP_001674977.1 CDS Shal_2765 NC_010334.1 3355258 3355530 R PFAM: histone family protein DNA-binding protein; KEGG: slo:Shew_2505 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(3355258..3355530) Shewanella halifaxensis HAW-EB4 5903027 YP_001674978.1 CDS Shal_2766 NC_010334.1 3355788 3358145 R KEGG: slo:Shew_2506 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3355788..3358145) Shewanella halifaxensis HAW-EB4 5903028 YP_001674979.1 CDS clpX NC_010334.1 3358293 3359570 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3358293..3359570) Shewanella halifaxensis HAW-EB4 5902903 YP_001674980.1 CDS clpP NC_010334.1 3359655 3360266 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3359655..3360266) Shewanella halifaxensis HAW-EB4 5902904 YP_001674981.1 CDS tig NC_010334.1 3360357 3361661 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3360357..3361661) Shewanella halifaxensis HAW-EB4 5903210 YP_001674982.1 CDS Shal_2770 NC_010334.1 3362591 3363445 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3362591..3363445 Shewanella halifaxensis HAW-EB4 5902881 YP_001674983.1 CDS cysS NC_010334.1 3363701 3365080 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3363701..3365080) Shewanella halifaxensis HAW-EB4 5903081 YP_001674984.1 CDS Shal_2772 NC_010334.1 3365364 3365876 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: slo:Shew_2512 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 3365364..3365876 Shewanella halifaxensis HAW-EB4 5903082 YP_001674985.1 CDS Shal_2773 NC_010334.1 3365887 3366603 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3365887..3366603 Shewanella halifaxensis HAW-EB4 5902754 YP_001674986.1 CDS Shal_2774 NC_010334.1 3367016 3367612 D PFAM: protein of unknown function DUF1282; KEGG: sbl:Sbal_1597 protein of unknown function DUF1282; hypothetical protein 3367016..3367612 Shewanella halifaxensis HAW-EB4 5902755 YP_001674987.1 CDS Shal_2775 NC_010334.1 3367730 3369400 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3367730..3369400) Shewanella halifaxensis HAW-EB4 5903006 YP_001674988.1 CDS Shal_2776 NC_010334.1 3369573 3371867 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: slo:Shew_2517 ferrous iron transport protein B; ferrous iron transport protein B complement(3369573..3371867) Shewanella halifaxensis HAW-EB4 5903007 YP_001674989.1 CDS Shal_2777 NC_010334.1 3371860 3372099 R PFAM: FeoA family protein; KEGG: shw:Sputw3181_2621 FeoA family protein; FeoA family protein complement(3371860..3372099) Shewanella halifaxensis HAW-EB4 5902807 YP_001674990.1 CDS Shal_2778 NC_010334.1 3372541 3373503 D TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: slo:Shew_2519 cytochrome c family protein; cytochrome C family protein 3372541..3373503 Shewanella halifaxensis HAW-EB4 5902808 YP_001674991.1 CDS Shal_2779 NC_010334.1 3373519 3375639 D KEGG: slo:Shew_2520 outer membrane protein, putative; outer membrane protein 3373519..3375639 Shewanella halifaxensis HAW-EB4 5902673 YP_001674992.1 CDS Shal_2780 NC_010334.1 3375769 3377694 D KEGG: slo:Shew_2521 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 3375769..3377694 Shewanella halifaxensis HAW-EB4 5902674 YP_001674993.1 CDS Shal_2781 NC_010334.1 3377799 3379982 D KEGG: slo:Shew_2522 decaheme cytochrome c; decaheme cytochrome c 3377799..3379982 Shewanella halifaxensis HAW-EB4 5902825 YP_001674994.1 CDS Shal_2782 NC_010334.1 3380518 3382986 D KEGG: spc:Sputcn32_1479 hypothetical protein; hypothetical protein 3380518..3382986 Shewanella halifaxensis HAW-EB4 5902826 YP_001674995.1 CDS Shal_2783 NC_010334.1 3383437 3385617 D KEGG: slo:Shew_2524 decaheme cytochrome c; hypothetical protein 3383437..3385617 Shewanella halifaxensis HAW-EB4 5903071 YP_001674996.1 CDS Shal_2784 NC_010334.1 3385992 3388028 D KEGG: sfr:Sfri_2637 decaheme cytochrome c; decaheme cytochrome c 3385992..3388028 Shewanella halifaxensis HAW-EB4 5903072 YP_001674997.1 CDS Shal_2785 NC_010334.1 3388144 3389130 D TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: slo:Shew_2526 cytochrome c family protein; cytochrome C family protein 3388144..3389130 Shewanella halifaxensis HAW-EB4 5902593 YP_001674998.1 CDS Shal_2786 NC_010334.1 3389144 3391246 D KEGG: slo:Shew_2527 outer membrane protein precursor MtrB; outer membrane protein MtrB 3389144..3391246 Shewanella halifaxensis HAW-EB4 5902594 YP_001674999.1 CDS Shal_2787 NC_010334.1 3391760 3392338 D KEGG: sbl:Sbal_1586 hypothetical protein; hypothetical protein 3391760..3392338 Shewanella halifaxensis HAW-EB4 5902895 YP_001675000.1 CDS Shal_2788 NC_010334.1 3392369 3392974 D KEGG: saz:Sama_1203 hypothetical protein; hypothetical protein 3392369..3392974 Shewanella halifaxensis HAW-EB4 5902896 YP_001675001.1 CDS Shal_2789 NC_010334.1 3393111 3394271 D PFAM: sugar diacid recognition domain protein; KEGG: slo:Shew_2528 transcriptional regulator, CdaR; transcriptional regulator CdaR 3393111..3394271 Shewanella halifaxensis HAW-EB4 5902850 YP_001675002.1 CDS Shal_2790 NC_010334.1 3394275 3394811 D KEGG: vch:VC0502 type IV pilin, putative; type IV pilin 3394275..3394811 Shewanella halifaxensis HAW-EB4 5902851 YP_001675003.1 CDS Shal_2791 NC_010334.1 3394896 3395861 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: vpa:VPA0248 putative outer membrane protein OmpA; OmpA/MotB domain-containing protein complement(3394896..3395861) Shewanella halifaxensis HAW-EB4 5903121 YP_001675004.1 CDS Shal_2792 NC_010334.1 3395888 3396979 R KEGG: vha:VIBHAR_07131 hypothetical protein; hypothetical protein complement(3395888..3396979) Shewanella halifaxensis HAW-EB4 5903122 YP_001675005.1 CDS Shal_2793 NC_010334.1 3396981 3397709 R KEGG: shm:Shewmr7_2311 hypothetical protein; hypothetical protein complement(3396981..3397709) Shewanella halifaxensis HAW-EB4 5903067 YP_001675006.1 CDS Shal_2794 NC_010334.1 3397713 3400655 R KEGG: sbm:Shew185_0590 P pilus assembly protein porin PapC-like protein; P pilus assembly protein porin PapC-like protein complement(3397713..3400655) Shewanella halifaxensis HAW-EB4 5903068 YP_001675007.1 CDS Shal_2795 NC_010334.1 3400652 3401185 R hypothetical protein complement(3400652..3401185) Shewanella halifaxensis HAW-EB4 5902632 YP_001675008.1 CDS Shal_2796 NC_010334.1 3401221 3401799 R hypothetical protein complement(3401221..3401799) Shewanella halifaxensis HAW-EB4 5902633 YP_001675009.1 CDS Shal_2797 NC_010334.1 3402239 3405154 R KEGG: vha:VIBHAR_05990 hypothetical protein; hypothetical protein complement(3402239..3405154) Shewanella halifaxensis HAW-EB4 5903139 YP_001675010.1 CDS Shal_2798 NC_010334.1 3405470 3406411 R KEGG: vha:VIBHAR_02615 hypothetical protein; hypothetical protein complement(3405470..3406411) Shewanella halifaxensis HAW-EB4 5903140 YP_001675011.1 CDS Shal_2799 NC_010334.1 3406705 3408063 D PFAM: Gluconate transporter; Citrate transporter; KEGG: slo:Shew_2533 gluconate transporter; gluconate transporter 3406705..3408063 Shewanella halifaxensis HAW-EB4 5902663 YP_001675012.1 CDS Shal_2800 NC_010334.1 3408190 3409344 D PFAM: glycerate kinase; KEGG: slo:Shew_2534 glycerate kinase; glycerate kinase 3408190..3409344 Shewanella halifaxensis HAW-EB4 5902664 YP_001675013.1 CDS Shal_2801 NC_010334.1 3409605 3411251 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: slo:Shew_2535 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 3409605..3411251 Shewanella halifaxensis HAW-EB4 5902624 YP_001675014.1 CDS Shal_2802 NC_010334.1 3411282 3411938 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2370 methyltransferase type 11; type 12 methyltransferase complement(3411282..3411938) Shewanella halifaxensis HAW-EB4 5902625 YP_001675015.1 CDS Shal_2804 NC_010334.1 3412876 3413853 D KEGG: tdn:Tmden_0652 hypothetical protein; hypothetical protein 3412876..3413853 Shewanella halifaxensis HAW-EB4 5902697 YP_001675016.1 CDS Shal_2805 NC_010334.1 3413878 3414876 D hypothetical protein 3413878..3414876 Shewanella halifaxensis HAW-EB4 5902939 YP_001675017.1 CDS Shal_2806 NC_010334.1 3414849 3415478 D KEGG: mmw:Mmwyl1_1032 hypothetical protein; hypothetical protein 3414849..3415478 Shewanella halifaxensis HAW-EB4 5902940 YP_001675018.1 CDS Shal_2807 NC_010334.1 3415540 3417087 D PFAM: Lytic transglycosylase catalytic; KEGG: pha:PSHAb0242 putative transglycosylase; lytic transglycosylase 3415540..3417087 Shewanella halifaxensis HAW-EB4 5902854 YP_001675019.1 CDS Shal_2808 NC_010334.1 3417108 3417278 D KEGG: vfi:VFA0327 hypothetical protein; hypothetical protein 3417108..3417278 Shewanella halifaxensis HAW-EB4 5902855 YP_001675020.1 CDS Shal_2809 NC_010334.1 3417281 3418018 D KEGG: pha:PSHAb0243 putative orphan protein; hypothetical protein 3417281..3418018 Shewanella halifaxensis HAW-EB4 5903123 YP_001675021.1 CDS Shal_2810 NC_010334.1 3418187 3419920 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO_1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase subunit alpha/beta complement(3418187..3419920) Shewanella halifaxensis HAW-EB4 5903124 YP_001675022.1 CDS Shal_2811 NC_010334.1 3420204 3421049 D PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0787 pseudouridine synthase; pseudouridine synthase 3420204..3421049 Shewanella halifaxensis HAW-EB4 5902640 YP_001675023.1 CDS Shal_2812 NC_010334.1 3421140 3421880 R PFAM: cytochrome B561; KEGG: slo:Shew_2692 cytochrome b561; cytochrome B561 complement(3421140..3421880) Shewanella halifaxensis HAW-EB4 5902641 YP_001675024.1 CDS Shal_2813 NC_010334.1 3422047 3422712 R PFAM: Glutathione S-transferase domain; KEGG: sfr:Sfri_2500 glutathione S-transferase, C-terminal domain protein; glutathione S-transferase domain-containing protein complement(3422047..3422712) Shewanella halifaxensis HAW-EB4 5903784 YP_001675025.1 CDS Shal_2814 NC_010334.1 3422971 3423819 D PFAM: MscS Mechanosensitive ion channel; KEGG: sfr:Sfri_2100 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3422971..3423819 Shewanella halifaxensis HAW-EB4 5903785 YP_001675026.1 CDS Shal_2815 NC_010334.1 3423906 3424127 R KEGG: rxy:Rxyl_2652 hypothetical protein; hypothetical protein complement(3423906..3424127) Shewanella halifaxensis HAW-EB4 5903353 YP_001675027.1 CDS Shal_2816 NC_010334.1 3424166 3424609 R KEGG: saz:Sama_1098 hypothetical protein; hypothetical protein complement(3424166..3424609) Shewanella halifaxensis HAW-EB4 5903354 YP_001675028.1 CDS Shal_2817 NC_010334.1 3424895 3425998 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ppr:PBPRA1465 steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase complement(3424895..3425998) Shewanella halifaxensis HAW-EB4 5904351 YP_001675029.1 CDS Shal_2818 NC_010334.1 3426005 3427726 R Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase complement(3426005..3427726) Shewanella halifaxensis HAW-EB4 5904352 YP_001675030.1 CDS Shal_2819 NC_010334.1 3427732 3428637 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO_1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein complement(3427732..3428637) Shewanella halifaxensis HAW-EB4 5904467 YP_001675031.1 CDS Shal_2820 NC_010334.1 3428767 3429816 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3428767..3429816) Shewanella halifaxensis HAW-EB4 5904468 YP_001675032.1 CDS Shal_2821 NC_010334.1 3430076 3431404 R KEGG: spc:Sputcn32_1444 hypothetical protein; hypothetical protein complement(3430076..3431404) Shewanella halifaxensis HAW-EB4 5904495 YP_001675033.1 CDS Shal_2822 NC_010334.1 3431496 3432674 R KEGG: slo:Shew_1711 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(3431496..3432674) Shewanella halifaxensis HAW-EB4 5904496 YP_001675034.1 CDS Shal_2823 NC_010334.1 3433055 3433297 D PFAM: protein of unknown function DUF1289; KEGG: sfr:Sfri_1363 protein of unknown function DUF1289; hypothetical protein 3433055..3433297 Shewanella halifaxensis HAW-EB4 5904544 YP_001675035.1 CDS Shal_2824 NC_010334.1 3433404 3433778 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: slo:Shew_1709 HNH nuclease; hypothetical protein complement(3433404..3433778) Shewanella halifaxensis HAW-EB4 5904545 YP_001675036.1 CDS Shal_2825 NC_010334.1 3433847 3435823 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: shw:Sputw3181_2658 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(3433847..3435823) Shewanella halifaxensis HAW-EB4 5903202 YP_001675037.1 CDS Shal_2826 NC_010334.1 3436403 3437113 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3436403..3437113) Shewanella halifaxensis HAW-EB4 5903203 YP_001675038.1 CDS Shal_2827 NC_010334.1 3437135 3437953 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3437135..3437953) Shewanella halifaxensis HAW-EB4 5903309 YP_001675039.1 CDS Shal_2828 NC_010334.1 3437985 3439637 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease complement(3437985..3439637) Shewanella halifaxensis HAW-EB4 5903310 YP_001675040.1 CDS Shal_2829 NC_010334.1 3439725 3441980 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3439725..3441980) Shewanella halifaxensis HAW-EB4 5904660 YP_001675041.1 CDS Shal_2830 NC_010334.1 3442242 3442742 D PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_1697 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 3442242..3442742 Shewanella halifaxensis HAW-EB4 5904661 YP_001675042.1 CDS Shal_2831 NC_010334.1 3443029 3443628 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nis:NIS_1660 signal transduction response regulator; diguanylate cyclase complement(3443029..3443628) Shewanella halifaxensis HAW-EB4 5904831 YP_001675043.1 CDS Shal_2833 NC_010334.1 3444235 3445455 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(3444235..3445455) Shewanella halifaxensis HAW-EB4 5902952 YP_001675044.1 CDS Shal_2834 NC_010334.1 3446008 3446667 R PFAM: regulatory protein TetR; KEGG: asa:ASA_3408 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3446008..3446667) Shewanella halifaxensis HAW-EB4 5902953 YP_001675045.1 CDS Shal_2835 NC_010334.1 3447060 3448460 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: aha:AHA_0949 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 3447060..3448460 Shewanella halifaxensis HAW-EB4 5903101 YP_001675046.1 CDS Shal_2836 NC_010334.1 3448473 3450236 D catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type; cryptic adenine deaminase 3448473..3450236 Shewanella halifaxensis HAW-EB4 5903102 YP_001675047.1 CDS Shal_2837 NC_010334.1 3450980 3451798 D KEGG: she:Shewmr4_2564 hypothetical protein; hypothetical protein 3450980..3451798 Shewanella halifaxensis HAW-EB4 5902750 YP_001675048.1 CDS Shal_2838 NC_010334.1 3451989 3452408 R KEGG: saz:Sama_1395 hypothetical protein; hypothetical protein complement(3451989..3452408) Shewanella halifaxensis HAW-EB4 5902751 YP_001675049.1 CDS Shal_2839 NC_010334.1 3452495 3453067 R KEGG: shn:Shewana3_2741 hypothetical protein; hypothetical protein complement(3452495..3453067) Shewanella halifaxensis HAW-EB4 5902628 YP_001675050.1 CDS Shal_2840 NC_010334.1 3453255 3456185 R PFAM: Thrombospondin type 3 repeat; peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: slo:Shew_1685 microbial collagenase; collagenase complement(3453255..3456185) Shewanella halifaxensis HAW-EB4 5902629 YP_001675051.1 CDS Shal_2841 NC_010334.1 3456978 3457571 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1684 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3456978..3457571 Shewanella halifaxensis HAW-EB4 5902699 YP_001675052.1 CDS Shal_2842 NC_010334.1 3457592 3458158 D PFAM: protein of unknown function DUF1415; KEGG: shw:Sputw3181_2672 protein of unknown function DUF1415; hypothetical protein 3457592..3458158 Shewanella halifaxensis HAW-EB4 5902700 YP_001675053.1 CDS Shal_2843 NC_010334.1 3458231 3458995 D PFAM: ribonuclease H; KEGG: sfr:Sfri_3175 ribonuclease H; ribonuclease H 3458231..3458995 Shewanella halifaxensis HAW-EB4 5902715 YP_001675054.1 CDS Shal_2844 NC_010334.1 3459099 3459518 D KEGG: slo:Shew_1678 hypothetical protein; hypothetical protein 3459099..3459518 Shewanella halifaxensis HAW-EB4 5902716 YP_001675055.1 CDS Shal_2845 NC_010334.1 3459675 3461033 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: slo:Shew_1677 leucyl aminopeptidase; leucyl aminopeptidase 3459675..3461033 Shewanella halifaxensis HAW-EB4 5902703 YP_001675056.1 CDS Shal_2846 NC_010334.1 3461233 3462249 R PFAM: ApbE family lipoprotein; KEGG: sdn:Sden_0988 ApbE-like lipoprotein; ApbE family lipoprotein complement(3461233..3462249) Shewanella halifaxensis HAW-EB4 5902704 YP_001675057.1 CDS Shal_2847 NC_010334.1 3462350 3464104 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO_4620 fumarate reductase, flavoprotein subunit precursor; flavocytochrome c complement(3462350..3464104) Shewanella halifaxensis HAW-EB4 5902913 YP_001675058.1 CDS Shal_2848 NC_010334.1 3464133 3464879 R KEGG: shn:Shewana3_4005 hypothetical protein; hypothetical protein complement(3464133..3464879) Shewanella halifaxensis HAW-EB4 5902914 YP_001675059.1 CDS Shal_2849 NC_010334.1 3465311 3466528 R KEGG: shn:Shewana3_4006 histidine kinase A domain protein domain protein; histidine kinase A domain-containing protein complement(3465311..3466528) Shewanella halifaxensis HAW-EB4 5903153 YP_001675060.1 CDS Shal_2850 NC_010334.1 3466519 3467190 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_4623 DNA-binding response regulator; two component transcriptional regulator complement(3466519..3467190) Shewanella halifaxensis HAW-EB4 5903154 YP_001675061.1 CDS Shal_2851 NC_010334.1 3467194 3467928 R PFAM: regulatory protein LuxR; KEGG: son:SO_4624 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(3467194..3467928) Shewanella halifaxensis HAW-EB4 5902852 YP_001675062.1 CDS Shal_2852 NC_010334.1 3468627 3469697 D KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 3468627..3469697 Shewanella halifaxensis HAW-EB4 5902853 YP_001675063.1 CDS Shal_2853 NC_010334.1 3470014 3470316 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: vco:VC0395_0290 hypothetical protein; transcriptional antiterminator Rof 3470014..3470316 Shewanella halifaxensis HAW-EB4 5903145 YP_001675064.1 CDS Shal_2854 NC_010334.1 3470566 3471006 D KEGG: tcx:Tcr_1988 hypothetical protein; hypothetical protein 3470566..3471006 Shewanella halifaxensis HAW-EB4 5903146 YP_001675065.1 CDS Shal_2855 NC_010334.1 3471268 3472476 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: ppr:PBPRB1458 putative NupC family protein (permease); nucleoside transporter complement(3471268..3472476) Shewanella halifaxensis HAW-EB4 5903131 YP_001675066.1 CDS Shal_2856 NC_010334.1 3473000 3474091 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: vfi:VFA0483 rod shape-determining protein RodA; rod shape-determining protein RodA complement(3473000..3474091) Shewanella halifaxensis HAW-EB4 5903132 YP_001675067.1 CDS Shal_2857 NC_010334.1 3474508 3475455 R PFAM: UspA domain protein; KEGG: vch:VCA0159 hypothetical protein; UspA domain-containing protein complement(3474508..3475455) Shewanella halifaxensis HAW-EB4 5903077 YP_001675068.1 CDS Shal_2859 NC_010334.1 3476618 3476701 R KEGG: vha:VIBHAR_06882 hypothetical protein; hypothetical protein complement(3476618..3476701) Shewanella halifaxensis HAW-EB4 5902862 YP_001675069.1 CDS Shal_2860 NC_010334.1 3477490 3477834 R KEGG: vvu:VV2_0955 hypothetical protein; hypothetical protein complement(3477490..3477834) Shewanella halifaxensis HAW-EB4 5902863 YP_001675070.1 CDS Shal_2861 NC_010334.1 3477859 3479616 R KEGG: pmy:Pmen_1369 beta-lactamase domain protein; alkyl sulfatase-like protein complement(3477859..3479616) Shewanella halifaxensis HAW-EB4 5903089 YP_001675071.1 CDS Shal_2862 NC_010334.1 3479787 3480719 D PFAM: regulatory protein LysR; KEGG: vvu:VV2_0953 transcriptional regulator; LysR family transcriptional regulator 3479787..3480719 Shewanella halifaxensis HAW-EB4 5903090 YP_001675072.1 CDS Shal_2863 NC_010334.1 3480899 3482023 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: syn:sll0644 esterase; alpha/beta hydrolase domain-containing protein 3480899..3482023 Shewanella halifaxensis HAW-EB4 5903004 YP_001675073.1 CDS Shal_2864 NC_010334.1 3482397 3484037 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vvu:VV2_1411 predicted membrane-associated metal-dependent hydrolase; sulfatase complement(3482397..3484037) Shewanella halifaxensis HAW-EB4 5903005 YP_001675074.1 CDS Shal_2866 NC_010334.1 3484876 3486468 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_1676 ABC transporter-related protein; ABC transporter-like protein complement(3484876..3486468) Shewanella halifaxensis HAW-EB4 5903470 YP_001675075.1 CDS Shal_2867 NC_010334.1 3486769 3489054 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: shn:Shewana3_2761 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(3486769..3489054) Shewanella halifaxensis HAW-EB4 5903023 YP_001675076.1 CDS Shal_2868 NC_010334.1 3489177 3489572 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: son:SO_1687 transcriptional regulator, MerR family; MerR family transcriptional regulator 3489177..3489572 Shewanella halifaxensis HAW-EB4 5903024 YP_001675077.1 CDS Shal_2869 NC_010334.1 3489682 3491715 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sbl:Sbal_1503 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(3489682..3491715) Shewanella halifaxensis HAW-EB4 5903159 YP_001675078.1 CDS Shal_2870 NC_010334.1 3491792 3492019 R KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein complement(3491792..3492019) Shewanella halifaxensis HAW-EB4 5903160 YP_001675079.1 CDS Shal_2871 NC_010334.1 3492167 3492277 R hypothetical protein complement(3492167..3492277) Shewanella halifaxensis HAW-EB4 5902844 YP_001675080.1 CDS fabG NC_010334.1 3492284 3493042 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3492284..3493042) Shewanella halifaxensis HAW-EB4 5902845 YP_001675081.1 CDS Shal_2873 NC_010334.1 3493047 3493976 R KEGG: slo:Shew_1672 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(3493047..3493976) Shewanella halifaxensis HAW-EB4 5902909 YP_001675082.1 CDS Shal_2874 NC_010334.1 3494153 3495355 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: slo:Shew_1671 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3494153..3495355) Shewanella halifaxensis HAW-EB4 5902910 YP_001675083.1 CDS Shal_2875 NC_010334.1 3495355 3496164 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3495355..3496164) Shewanella halifaxensis HAW-EB4 5904658 YP_001675084.1 CDS Shal_2876 NC_010334.1 3496217 3497374 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbm:Shew185_1491 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3496217..3497374) Shewanella halifaxensis HAW-EB4 5904659 YP_001675085.1 CDS Shal_2877 NC_010334.1 3497590 3499089 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: spc:Sputcn32_1398 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(3497590..3499089) Shewanella halifaxensis HAW-EB4 5903319 YP_001675086.1 CDS Shal_2878 NC_010334.1 3499267 3500457 R KEGG: sdn:Sden_1943 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3499267..3500457) Shewanella halifaxensis HAW-EB4 5903320 YP_001675087.1 CDS Shal_2879 NC_010334.1 3500955 3501626 D PFAM: regulatory protein LuxR; KEGG: vvu:VV1_2744 response regulator; LuxR family transcriptional regulator 3500955..3501626 Shewanella halifaxensis HAW-EB4 5904551 YP_001675088.1 CDS Shal_2880 NC_010334.1 3501809 3502336 D KEGG: vvy:VV1518 hypothetical protein; hypothetical protein 3501809..3502336 Shewanella halifaxensis HAW-EB4 5904552 YP_001675089.1 CDS Shal_2881 NC_010334.1 3502402 3503100 D KEGG: vvy:VV1519 P pilus assembly protein, chaperone PapD; P pilus assembly protein, chaperone PapD 3502402..3503100 Shewanella halifaxensis HAW-EB4 5904540 YP_001675090.1 CDS Shal_2882 NC_010334.1 3503097 3505547 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: vvy:VV1520 P pilus assembly protein, porin PapC; fimbrial biogenesis outer membrane usher protein 3503097..3505547 Shewanella halifaxensis HAW-EB4 5904541 YP_001675091.1 CDS Shal_2883 NC_010334.1 3505534 3506433 D KEGG: vvy:VV1521 hypothetical protein; hypothetical protein 3505534..3506433 Shewanella halifaxensis HAW-EB4 5904465 YP_001675092.1 CDS Shal_2884 NC_010334.1 3506573 3507511 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3506573..3507511) Shewanella halifaxensis HAW-EB4 5904466 YP_001675093.1 CDS Shal_2885 NC_010334.1 3507588 3507989 R KEGG: slo:Shew_2552 hypothetical protein; hypothetical protein complement(3507588..3507989) Shewanella halifaxensis HAW-EB4 5904270 YP_001675094.1 CDS Shal_2886 NC_010334.1 3508208 3508981 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_2708 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3508208..3508981 Shewanella halifaxensis HAW-EB4 5904271 YP_001675095.1 CDS Shal_2887 NC_010334.1 3509064 3509708 R receptor for colicin S4; outer membrane protein W complement(3509064..3509708) Shewanella halifaxensis HAW-EB4 5903834 YP_001675096.1 CDS Shal_2888 NC_010334.1 3510288 3511391 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3510288..3511391 Shewanella halifaxensis HAW-EB4 5903835 YP_001675097.1 CDS Shal_2889 NC_010334.1 3511401 3514505 D PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_0371 acriflavin resistance protein; acriflavin resistance protein 3511401..3514505 Shewanella halifaxensis HAW-EB4 5903656 YP_001675098.1 CDS Shal_2890 NC_010334.1 3514649 3515593 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0024 transcriptional regulators, LysR family; LysR family transcriptional regulator complement(3514649..3515593) Shewanella halifaxensis HAW-EB4 5903657 YP_001675099.1 CDS Shal_2891 NC_010334.1 3515728 3516552 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: vfi:VFA0023 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3515728..3516552 Shewanella halifaxensis HAW-EB4 5903702 YP_001675100.1 CDS Shal_2892 NC_010334.1 3516675 3517565 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swo:Swol_0919 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; radical SAM domain-containing protein 3516675..3517565 Shewanella halifaxensis HAW-EB4 5903703 YP_001675101.1 CDS Shal_2893 NC_010334.1 3517709 3518431 R hypothetical protein complement(3517709..3518431) Shewanella halifaxensis HAW-EB4 5903418 YP_001675102.1 CDS Shal_2894 NC_010334.1 3518576 3519169 R PFAM: protein of unknown function DUF925; KEGG: shm:Shewmr7_2669 protein of unknown function DUF925; hypothetical protein complement(3518576..3519169) Shewanella halifaxensis HAW-EB4 5903419 YP_001675103.1 CDS Shal_2895 NC_010334.1 3519315 3519716 R KEGG: shn:Shewana3_1689 hypothetical protein; hypothetical protein complement(3519315..3519716) Shewanella halifaxensis HAW-EB4 5903198 YP_001675104.1 CDS Shal_2896 NC_010334.1 3519760 3520626 R KEGG: slo:Shew_2556 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(3519760..3520626) Shewanella halifaxensis HAW-EB4 5903199 YP_001675105.1 CDS Shal_2897 NC_010334.1 3520707 3521639 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: slo:Shew_2557 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3520707..3521639) Shewanella halifaxensis HAW-EB4 5902960 YP_001675106.1 CDS Shal_2898 NC_010334.1 3521977 3522867 D TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: slo:Shew_2558 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3521977..3522867 Shewanella halifaxensis HAW-EB4 5902961 YP_001675107.1 CDS Shal_2899 NC_010334.1 3522959 3524506 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(3522959..3524506) Shewanella halifaxensis HAW-EB4 5902933 YP_001675108.1 CDS Shal_2900 NC_010334.1 3525438 3527342 R PFAM: AMP-dependent synthetase and ligase; KEGG: sbm:Shew185_2844 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3525438..3527342) Shewanella halifaxensis HAW-EB4 5902934 YP_001675109.1 CDS Shal_2901 NC_010334.1 3527707 3528105 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: slo:Shew_2569 transcriptional regulator, MerR family; MerR family transcriptional regulator 3527707..3528105 Shewanella halifaxensis HAW-EB4 5903166 YP_001675110.1 CDS Shal_2902 NC_010334.1 3528204 3529373 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: slo:Shew_2570 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3528204..3529373 Shewanella halifaxensis HAW-EB4 5903167 YP_001675111.1 CDS Shal_2903 NC_010334.1 3529461 3531068 D PFAM: carboxyl transferase; KEGG: sdn:Sden_2246 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3529461..3531068 Shewanella halifaxensis HAW-EB4 5903095 YP_001675112.1 CDS Shal_2904 NC_010334.1 3531127 3532008 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: slo:Shew_2572 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3531127..3532008 Shewanella halifaxensis HAW-EB4 5903096 YP_001675113.1 CDS Shal_2905 NC_010334.1 3532010 3534118 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 3532010..3534118 Shewanella halifaxensis HAW-EB4 5904982 YP_001675114.1 CDS Shal_2906 NC_010334.1 3534115 3534294 D KEGG: slo:Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding; hypothetical protein 3534115..3534294 Shewanella halifaxensis HAW-EB4 5904983 YP_001675115.1 CDS Shal_2907 NC_010334.1 3534295 3535194 D PFAM: pyruvate carboxyltransferase; KEGG: slo:Shew_2574 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3534295..3535194 Shewanella halifaxensis HAW-EB4 5904827 YP_001675116.1 CDS Shal_2908 NC_010334.1 3535266 3536030 D KEGG: slo:Shew_2575 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3535266..3536030 Shewanella halifaxensis HAW-EB4 5904828 YP_001675117.1 CDS Shal_2909 NC_010334.1 3536043 3536699 D KEGG: slo:Shew_2576 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3536043..3536699 Shewanella halifaxensis HAW-EB4 5905055 YP_001675118.1 CDS Shal_2910 NC_010334.1 3536811 3539924 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shw:Sputw3181_4067 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(3536811..3539924) Shewanella halifaxensis HAW-EB4 5905056 YP_001675119.1 CDS Shal_2911 NC_010334.1 3539958 3541094 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit complement(3539958..3541094) Shewanella halifaxensis HAW-EB4 5904838 YP_001675120.1 CDS Shal_2912 NC_010334.1 3541349 3542026 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5111 DNA-binding response regulator ColR, putative; two component transcriptional regulator 3541349..3542026 Shewanella halifaxensis HAW-EB4 5904839 YP_001675121.1 CDS Shal_2913 NC_010334.1 3542023 3543312 D PFAM: histidine kinase A domain protein; KEGG: sfr:Sfri_3675 periplasmic sensor signal transduction histidine kinase; histidine kinase 3542023..3543312 Shewanella halifaxensis HAW-EB4 5904856 YP_001675122.1 CDS Shal_2914 NC_010334.1 3543330 3543815 D KEGG: vfi:VF1339 hypothetical protein; hypothetical protein 3543330..3543815 Shewanella halifaxensis HAW-EB4 5904857 YP_001675123.1 CDS Shal_2915 NC_010334.1 3543905 3544906 R PFAM: alpha/beta hydrolase fold; KEGG: sbm:Shew185_3419 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3543905..3544906) Shewanella halifaxensis HAW-EB4 5905174 YP_001675124.1 CDS Shal_2916 NC_010334.1 3545109 3547127 R PFAM: beta-lactamase domain protein; KEGG: son:SO_1606 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein complement(3545109..3547127) Shewanella halifaxensis HAW-EB4 5905175 YP_001675125.1 CDS Shal_2917 NC_010334.1 3547270 3547818 D KEGG: sbm:Shew185_0872 hypothetical protein; hypothetical protein 3547270..3547818 Shewanella halifaxensis HAW-EB4 5905410 YP_001675126.1 CDS Shal_2918 NC_010334.1 3548075 3549460 R PFAM: cytochrome c552; KEGG: shn:Shewana3_0658 cytochrome c552; nitrite reductase complement(3548075..3549460) Shewanella halifaxensis HAW-EB4 5905411 YP_001675127.1 CDS Shal_2919 NC_010334.1 3549845 3550285 D KEGG: sdn:Sden_2534 hypothetical protein; hypothetical protein 3549845..3550285 Shewanella halifaxensis HAW-EB4 5905482 YP_001675128.1 CDS Shal_2920 NC_010334.1 3550898 3552280 R PFAM: cytochrome c552; KEGG: shm:Shewmr7_3363 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase complement(3550898..3552280) Shewanella halifaxensis HAW-EB4 5905483 YP_001675129.1 CDS Shal_2921 NC_010334.1 3552882 3553187 D KEGG: sdn:Sden_2534 hypothetical protein; hypothetical protein 3552882..3553187 Shewanella halifaxensis HAW-EB4 5905321 YP_001675130.1 CDS Shal_2922 NC_010334.1 3553267 3553614 R PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0365 translation initiation inhibitor; endoribonuclease L-PSP complement(3553267..3553614) Shewanella halifaxensis HAW-EB4 5905322 YP_001675131.1 CDS Shal_2923 NC_010334.1 3553804 3554295 D KEGG: spc:Sputcn32_0630 hypothetical protein; hypothetical protein 3553804..3554295 Shewanella halifaxensis HAW-EB4 5905547 YP_001675132.1 CDS Shal_2924 NC_010334.1 3554396 3555136 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(3554396..3555136) Shewanella halifaxensis HAW-EB4 5905548 YP_001675133.1 CDS Shal_2925 NC_010334.1 3555221 3555886 R TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfr:Sfri_3683 4Fe-4S ferredoxin, iron-sulfur binding domain protein; dimethylsulfoxide reductase chain B complement(3555221..3555886) Shewanella halifaxensis HAW-EB4 5905033 YP_001675134.1 CDS Shal_2926 NC_010334.1 3555901 3558423 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO_1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase subunit A complement(3555901..3558423) Shewanella halifaxensis HAW-EB4 5905034 YP_001675135.1 CDS Shal_2927 NC_010334.1 3558463 3560487 R KEGG: sfr:Sfri_3685 outer membrane protein; outer membrane protein complement(3558463..3560487) Shewanella halifaxensis HAW-EB4 5905696 YP_001675136.1 CDS Shal_2928 NC_010334.1 3560505 3561443 R TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sfr:Sfri_3686 cytochrome c family protein; cytochrome C family protein complement(3560505..3561443) Shewanella halifaxensis HAW-EB4 5905697 YP_001675137.1 CDS Shal_2929 NC_010334.1 3562136 3562597 D KEGG: cps:CPS_0255 isoprenylcysteine carboxyl methyltransferase family protein; isoprenylcysteine carboxyl methyltransferase family protein 3562136..3562597 Shewanella halifaxensis HAW-EB4 5905764 YP_001675138.1 CDS Shal_2930 NC_010334.1 3562809 3564284 R PFAM: protein of unknown function DUF1176; protein of unknown function DUF1311; KEGG: pcr:Pcryo_1380 protein of unknown function DUF1176; hypothetical protein complement(3562809..3564284) Shewanella halifaxensis HAW-EB4 5905765 YP_001675139.1 CDS Shal_2931 NC_010334.1 3564721 3565032 D hypothetical protein 3564721..3565032 Shewanella halifaxensis HAW-EB4 5904711 YP_001675140.1 CDS Shal_2932 NC_010334.1 3565074 3565775 D hypothetical protein 3565074..3565775 Shewanella halifaxensis HAW-EB4 5904712 YP_001675141.1 CDS Shal_2933 NC_010334.1 3565778 3566677 D hypothetical protein 3565778..3566677 Shewanella halifaxensis HAW-EB4 5905692 YP_001675142.1 CDS Shal_2934 NC_010334.1 3566699 3567667 D KEGG: bam:Bamb_3528 hypothetical protein; hypothetical protein 3566699..3567667 Shewanella halifaxensis HAW-EB4 5905693 YP_001675143.1 CDS Shal_2935 NC_010334.1 3567657 3567923 D hypothetical protein 3567657..3567923 Shewanella halifaxensis HAW-EB4 5905829 YP_001675144.1 CDS Shal_2936 NC_010334.1 3568145 3569122 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(3568145..3569122) Shewanella halifaxensis HAW-EB4 5905830 YP_001675145.1 CDS Shal_2937 NC_010334.1 3569399 3569746 R hypothetical protein complement(3569399..3569746) Shewanella halifaxensis HAW-EB4 5903127 YP_001675146.1 CDS Shal_2938 NC_010334.1 3570035 3570601 R PFAM: LemA family protein; KEGG: ilo:IL1567 uncharacterized conserved membrane protein, LemA family; LemA family protein complement(3570035..3570601) Shewanella halifaxensis HAW-EB4 5903128 YP_001675147.1 CDS Shal_2939 NC_010334.1 3570720 3571982 R KEGG: ilo:IL1568 predicted membrane protein; hypothetical protein complement(3570720..3571982) Shewanella halifaxensis HAW-EB4 5906914 YP_001675148.1 CDS Shal_2940 NC_010334.1 3571969 3573336 R KEGG: pfl:PFL_1944 hypothetical protein; hypothetical protein complement(3571969..3573336) Shewanella halifaxensis HAW-EB4 5906915 YP_001675149.1 CDS Shal_2941 NC_010334.1 3573745 3574323 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(3573745..3574323) Shewanella halifaxensis HAW-EB4 5905712 YP_001675150.1 CDS Shal_2942 NC_010334.1 3574702 3576837 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: she:Shewmr4_1355 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 3574702..3576837 Shewanella halifaxensis HAW-EB4 5905713 YP_001675151.1 CDS Shal_2943 NC_010334.1 3577046 3578626 R PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_2582 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(3577046..3578626) Shewanella halifaxensis HAW-EB4 5902649 YP_001675152.1 CDS Shal_2944 NC_010334.1 3579124 3580047 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: slo:Shew_2583 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(3579124..3580047) Shewanella halifaxensis HAW-EB4 5902650 YP_001675153.1 CDS Shal_2945 NC_010334.1 3580047 3580796 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: slo:Shew_2584 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta complement(3580047..3580796) Shewanella halifaxensis HAW-EB4 5906662 YP_001675154.1 CDS Shal_2946 NC_010334.1 3581142 3581534 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sbm:Shew185_2867 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3581142..3581534 Shewanella halifaxensis HAW-EB4 5906663 YP_001675155.1 CDS Shal_2947 NC_010334.1 3581694 3584738 D PFAM: amidohydrolase; KEGG: slo:Shew_2586 amidohydrolase; amidohydrolase 3581694..3584738 Shewanella halifaxensis HAW-EB4 5906645 YP_001675156.1 CDS Shal_2948 NC_010334.1 3584741 3586135 D KEGG: slo:Shew_2587 hypothetical protein; hypothetical protein 3584741..3586135 Shewanella halifaxensis HAW-EB4 5906646 YP_001675157.1 CDS Shal_2949 NC_010334.1 3586274 3586657 D KEGG: shw:Sputw3181_1493 lipoprotein, putative; putative lipoprotein 3586274..3586657 Shewanella halifaxensis HAW-EB4 5906476 YP_001675158.1 CDS Shal_2950 NC_010334.1 3586685 3587458 D PFAM: protein of unknown function UPF0066; KEGG: sfr:Sfri_2751 protein of unknown function UPF0066; hypothetical protein 3586685..3587458 Shewanella halifaxensis HAW-EB4 5906477 YP_001675159.1 CDS Shal_2951 NC_010334.1 3587468 3588100 D PFAM: transferase hexapeptide repeat containing protein; KEGG: shw:Sputw3181_1491 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 3587468..3588100 Shewanella halifaxensis HAW-EB4 5906385 YP_001675160.1 CDS Shal_2952 NC_010334.1 3588430 3589899 D PFAM: amino acid permease-associated region; KEGG: lin:lin2462 hypothetical protein; amino acid permease 3588430..3589899 Shewanella halifaxensis HAW-EB4 5906386 YP_001675161.1 CDS Shal_2953 NC_010334.1 3590045 3590884 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hch:HCH_06121 transcriptional regulator; LysR family transcriptional regulator complement(3590045..3590884) Shewanella halifaxensis HAW-EB4 5906357 YP_001675162.1 CDS Shal_2954 NC_010334.1 3591105 3592718 D KEGG: cps:CPS_3603 hypothetical protein; hypothetical protein 3591105..3592718 Shewanella halifaxensis HAW-EB4 5906358 YP_001675163.1 CDS Shal_2955 NC_010334.1 3592720 3593430 D KEGG: cps:CPS_3591 3-oxoadipate CoA-transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3592720..3593430 Shewanella halifaxensis HAW-EB4 5906231 YP_001675164.1 CDS Shal_2956 NC_010334.1 3593427 3594122 D KEGG: cps:CPS_3592 3-oxoadipate CoA-transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3593427..3594122 Shewanella halifaxensis HAW-EB4 5906232 YP_001675165.1 CDS Shal_2957 NC_010334.1 3594184 3595590 D PFAM: aminotransferase class-III; KEGG: cps:CPS_3593 putative glutamate-1-semialdehyde-2,1-aminomutase; class III aminotransferase 3594184..3595590 Shewanella halifaxensis HAW-EB4 5905936 YP_001675166.1 CDS Shal_2958 NC_010334.1 3595599 3596870 D TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; KEGG: cps:CPS_3594 beta-ketoadipyl CoA thiolase; beta-ketoadipyl CoA thiolase 3595599..3596870 Shewanella halifaxensis HAW-EB4 5905937 YP_001675167.1 CDS Shal_2959 NC_010334.1 3597523 3598467 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase complement(3597523..3598467) Shewanella halifaxensis HAW-EB4 5906030 YP_001675168.1 CDS Shal_2960 NC_010334.1 3598887 3600599 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3598887..3600599 Shewanella halifaxensis HAW-EB4 5906031 YP_001675169.1 CDS Shal_2961 NC_010334.1 3601087 3602211 D PFAM: Patatin; KEGG: saz:Sama_1160 hypothetical protein; patatin 3601087..3602211 Shewanella halifaxensis HAW-EB4 5907026 YP_001675170.1 CDS Shal_2962 NC_010334.1 3602204 3602926 R KEGG: ppr:PBPRB1925 hypothetical protein; hypothetical protein complement(3602204..3602926) Shewanella halifaxensis HAW-EB4 5907027 YP_001675171.1 CDS Shal_2963 NC_010334.1 3603027 3604976 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: slo:Shew_2617 potassium efflux system protein; potassium efflux system protein complement(3603027..3604976) Shewanella halifaxensis HAW-EB4 5906928 YP_001675172.1 CDS Shal_2964 NC_010334.1 3605182 3606084 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbl:Sbal_1467 diguanylate cyclase; diguanylate cyclase 3605182..3606084 Shewanella halifaxensis HAW-EB4 5906929 YP_001675173.1 CDS Shal_2965 NC_010334.1 3606036 3607466 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: shn:Shewana3_2799 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(3606036..3607466) Shewanella halifaxensis HAW-EB4 5906837 YP_001675174.1 CDS dnaE NC_010334.1 3607468 3611001 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3607468..3611001) Shewanella halifaxensis HAW-EB4 5906838 YP_001675175.1 CDS rnhB NC_010334.1 3611111 3611722 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3611111..3611722) Shewanella halifaxensis HAW-EB4 5906833 YP_001675176.1 CDS lpxB NC_010334.1 3611722 3612873 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3611722..3612873) Shewanella halifaxensis HAW-EB4 5906834 YP_001675177.1 CDS Shal_2969 NC_010334.1 3612941 3613711 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3612941..3613711) Shewanella halifaxensis HAW-EB4 5906806 YP_001675178.1 CDS fabZ NC_010334.1 3613708 3614169 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3613708..3614169) Shewanella halifaxensis HAW-EB4 5906807 YP_001675179.1 CDS lpxD NC_010334.1 3614207 3615223 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3614207..3615223) Shewanella halifaxensis HAW-EB4 5906781 YP_001675180.1 CDS Shal_2972 NC_010334.1 3615228 3615734 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: slo:Shew_2626 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(3615228..3615734) Shewanella halifaxensis HAW-EB4 5906782 YP_001675181.1 CDS Shal_2973 NC_010334.1 3615785 3618268 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15) complement(3615785..3618268) Shewanella halifaxensis HAW-EB4 5906747 YP_001675182.1 CDS Shal_2974 NC_010334.1 3618300 3619670 R KEGG: son:SO_1636 membrane-associated zinc metalloprotease, putative; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease complement(3618300..3619670) Shewanella halifaxensis HAW-EB4 5906748 YP_001675183.1 CDS Shal_2975 NC_010334.1 3619685 3620875 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3619685..3620875) Shewanella halifaxensis HAW-EB4 5906658 YP_001675184.1 CDS Shal_2976 NC_010334.1 3620880 3621737 R PFAM: phosphatidate cytidylyltransferase; KEGG: saz:Sama_1144 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3620880..3621737) Shewanella halifaxensis HAW-EB4 5906659 YP_001675185.1 CDS Shal_2977 NC_010334.1 3621758 3622558 R KEGG: sbm:Shew185_1449 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3621758..3622558) Shewanella halifaxensis HAW-EB4 5906457 YP_001675186.1 CDS frr NC_010334.1 3622813 3623370 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3622813..3623370) Shewanella halifaxensis HAW-EB4 5906458 YP_001675187.1 CDS pyrH NC_010334.1 3623403 3624131 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3623403..3624131) Shewanella halifaxensis HAW-EB4 5906389 YP_001675188.1 CDS tsf NC_010334.1 3624275 3625126 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3624275..3625126) Shewanella halifaxensis HAW-EB4 5906390 YP_001675189.1 CDS rpsB NC_010334.1 3625260 3625988 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3625260..3625988) Shewanella halifaxensis HAW-EB4 5906194 YP_001675190.1 CDS Shal_2982 NC_010334.1 3626283 3627083 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3626283..3627083 Shewanella halifaxensis HAW-EB4 5906195 YP_001675191.1 CDS Shal_2983 NC_010334.1 3627299 3629854 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3627299..3629854 Shewanella halifaxensis HAW-EB4 5906145 YP_001675192.1 CDS dapD NC_010334.1 3629886 3630710 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3629886..3630710 Shewanella halifaxensis HAW-EB4 5906146 YP_001675193.1 CDS Shal_2985 NC_010334.1 3631186 3631530 D KEGG: shn:Shewana3_2819 hypothetical protein; hypothetical protein 3631186..3631530 Shewanella halifaxensis HAW-EB4 5906048 YP_001675194.1 CDS Shal_2986 NC_010334.1 3631599 3632432 R TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: sfr:Sfri_1265 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase complement(3631599..3632432) Shewanella halifaxensis HAW-EB4 5906049 YP_001675195.1 CDS Shal_2987 NC_010334.1 3632778 3633242 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3632778..3633242) Shewanella halifaxensis HAW-EB4 5905972 YP_001675196.1 CDS Shal_2988 NC_010334.1 3633571 3634410 R PFAM: pseudouridine synthase; KEGG: slo:Shew_2643 pseudouridylate synthase; pseudouridine synthase complement(3633571..3634410) Shewanella halifaxensis HAW-EB4 5905973 YP_001675197.1 CDS Shal_2989 NC_010334.1 3634432 3634752 R PFAM: protein of unknown function DUF446; KEGG: son:SO_1619 hypothetical protein; hypothetical protein complement(3634432..3634752) Shewanella halifaxensis HAW-EB4 5904895 YP_001675198.1 CDS Shal_2990 NC_010334.1 3635027 3636040 D KEGG: shn:Shewana3_2826 hypothetical protein; hypothetical protein 3635027..3636040 Shewanella halifaxensis HAW-EB4 5904896 YP_001675199.1 CDS Shal_2991 NC_010334.1 3636037 3636432 D KEGG: slo:Shew_2646 hypothetical protein; hypothetical protein 3636037..3636432 Shewanella halifaxensis HAW-EB4 5904649 YP_001675200.1 CDS Shal_2992 NC_010334.1 3637631 3637930 R KEGG: pmy:Pmen_1824 membrane protein-like protein; hypothetical protein complement(3637631..3637930) Shewanella halifaxensis HAW-EB4 5904650 YP_001675201.1 CDS Shal_2993 NC_010334.1 3637923 3638546 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2722 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3637923..3638546) Shewanella halifaxensis HAW-EB4 5904274 YP_001675202.1 CDS Shal_2994 NC_010334.1 3638749 3638982 D KEGG: slo:Shew_2649 hypothetical protein; hypothetical protein 3638749..3638982 Shewanella halifaxensis HAW-EB4 5904275 YP_001675203.1 CDS Shal_2995 NC_010334.1 3639003 3639395 R KEGG: sbm:Shew185_1429 hypothetical protein; hypothetical protein complement(3639003..3639395) Shewanella halifaxensis HAW-EB4 5903960 YP_001675204.1 CDS Shal_2996 NC_010334.1 3639534 3639902 D KEGG: slo:Shew_2651 hypothetical protein; hypothetical protein 3639534..3639902 Shewanella halifaxensis HAW-EB4 5903961 YP_001675205.1 CDS Shal_2997 NC_010334.1 3639889 3640662 D KEGG: slo:Shew_2652 hypothetical protein; hypothetical protein 3639889..3640662 Shewanella halifaxensis HAW-EB4 5904243 YP_001675206.1 CDS Shal_2998 NC_010334.1 3640753 3641394 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3640753..3641394) Shewanella halifaxensis HAW-EB4 5904244 YP_001675207.1 CDS queF NC_010334.1 3641439 3642311 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3641439..3642311 Shewanella halifaxensis HAW-EB4 5906865 YP_001675208.1 CDS Shal_3000 NC_010334.1 3642538 3643353 R hypothetical protein complement(3642538..3643353) Shewanella halifaxensis HAW-EB4 5906866 YP_001675209.1 CDS Shal_3001 NC_010334.1 3643541 3644116 R KEGG: vfi:VF0867 hypothetical protein; hypothetical protein complement(3643541..3644116) Shewanella halifaxensis HAW-EB4 5903376 YP_001675210.1 CDS Shal_3002 NC_010334.1 3644588 3645493 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_1607 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3644588..3645493) Shewanella halifaxensis HAW-EB4 5903377 YP_001675211.1 CDS Shal_3003 NC_010334.1 3645584 3646486 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbl:Sbal_1430 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3645584..3646486) Shewanella halifaxensis HAW-EB4 5906092 YP_001675212.1 CDS Shal_3004 NC_010334.1 3646686 3648671 D PFAM: beta-lactamase domain protein; KEGG: sbl:Sbal_1429 beta-lactamase domain protein; beta-lactamase domain-containing protein 3646686..3648671 Shewanella halifaxensis HAW-EB4 5906093 YP_001675213.1 CDS Shal_3005 NC_010334.1 3648764 3649720 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbm:Shew185_1421 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(3648764..3649720) Shewanella halifaxensis HAW-EB4 5906121 YP_001675214.1 CDS Shal_3006 NC_010334.1 3649836 3651863 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3649836..3651863) Shewanella halifaxensis HAW-EB4 5906122 YP_001675215.1 CDS Shal_3007 NC_010334.1 3652226 3653092 D KEGG: slo:Shew_2664 transcriptional regulator, putative; transcriptional regulator 3652226..3653092 Shewanella halifaxensis HAW-EB4 5903091 YP_001675216.1 CDS Shal_3008 NC_010334.1 3653092 3661389 D KEGG: slo:Shew_2665 beta-ketoacyl synthase; TIGRFAM: Polyketide-type polyunsaturated fatty acid synthase, PfaA; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; polyketide-type polyunsaturated fatty acid synthase PfaA 3653092..3661389 Shewanella halifaxensis HAW-EB4 5903092 YP_001675217.1 CDS Shal_3009 NC_010334.1 3661389 3663773 D TIGRFAM: PfaB family protein; KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; PfaB family protein 3661389..3663773 Shewanella halifaxensis HAW-EB4 5906413 YP_001675218.1 CDS Shal_3010 NC_010334.1 3663773 3669652 D PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: slo:Shew_2667 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 3663773..3669652 Shewanella halifaxensis HAW-EB4 5906414 YP_001675219.1 CDS Shal_3011 NC_010334.1 3669902 3671530 D TIGRFAM: PfaD family protein; KEGG: slo:Shew_2668 2-nitropropane dioxygenase, NPD; PfaD family protein 3669902..3671530 Shewanella halifaxensis HAW-EB4 5904421 YP_001675220.1 CDS Shal_3012 NC_010334.1 3672032 3672835 R hypothetical protein complement(3672032..3672835) Shewanella halifaxensis HAW-EB4 5904422 YP_001675221.1 CDS Shal_3013 NC_010334.1 3673383 3675116 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; KEGG: sdn:Sden_1662 GGDEF domain; diguanylate cyclase 3673383..3675116 Shewanella halifaxensis HAW-EB4 5906065 YP_001675222.1 CDS Shal_3014 NC_010334.1 3675319 3675867 D KEGG: shm:Shewmr7_0435 methylation site containing protein; hypothetical protein 3675319..3675867 Shewanella halifaxensis HAW-EB4 5906066 YP_001675223.1 CDS Shal_3015 NC_010334.1 3676025 3678337 R PFAM: peptidase S45 penicillin amidase; KEGG: slo:Shew_2669 penicillin amidase; penicillin amidase complement(3676025..3678337) Shewanella halifaxensis HAW-EB4 5905276 YP_001675224.1 CDS Shal_3016 NC_010334.1 3678575 3678826 D KEGG: vha:VIBHAR_05811 hypothetical protein; hypothetical protein 3678575..3678826 Shewanella halifaxensis HAW-EB4 5905277 YP_001675225.1 CDS Shal_3017 NC_010334.1 3679423 3680733 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: vfi:VF1790 ATP-dependent RNA helicase; DEAD/DEAH box helicase 3679423..3680733 Shewanella halifaxensis HAW-EB4 5905700 YP_001675226.1 CDS Shal_3018 NC_010334.1 3681057 3682247 D KEGG: sfr:Sfri_0530 hypothetical protein; hypothetical protein 3681057..3682247 Shewanella halifaxensis HAW-EB4 5905701 YP_001675227.1 CDS Shal_3019 NC_010334.1 3682322 3683653 R KEGG: sfr:Sfri_3605 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3682322..3683653) Shewanella halifaxensis HAW-EB4 5905268 YP_001675228.1 CDS Shal_3020 NC_010334.1 3684040 3686328 D TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_0719 TonB-dependent receptor, putative; TonB-dependent heme/hemoglobin receptor family protein 3684040..3686328 Shewanella halifaxensis HAW-EB4 5905269 YP_001675229.1 CDS Shal_3021 NC_010334.1 3686418 3688850 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1347 TonB-dependent receptor; TonB-dependent receptor plug complement(3686418..3688850) Shewanella halifaxensis HAW-EB4 5905976 YP_001675230.1 CDS Shal_3023 NC_010334.1 3689779 3690648 R KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein complement(3689779..3690648) Shewanella halifaxensis HAW-EB4 5906338 YP_001675231.1 CDS Shal_3024 NC_010334.1 3691872 3692192 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: slo:Shew_2694 propeptide, PepSY amd peptidase M4; peptidase 3691872..3692192 Shewanella halifaxensis HAW-EB4 5906339 YP_001675232.1 CDS Shal_3025 NC_010334.1 3692309 3692998 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_4647 DNA-binding response regulator; two component transcriptional regulator 3692309..3692998 Shewanella halifaxensis HAW-EB4 5906723 YP_001675233.1 CDS Shal_3026 NC_010334.1 3692979 3694538 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pin:Ping_0281 sensor histidine kinase with ATPase domain; histidine kinase 3692979..3694538 Shewanella halifaxensis HAW-EB4 5906724 YP_001675234.1 CDS Shal_3027 NC_010334.1 3694636 3695985 D KEGG: slo:Shew_2697 hypothetical protein; hypothetical protein 3694636..3695985 Shewanella halifaxensis HAW-EB4 5906622 YP_001675235.1 CDS Shal_3028 NC_010334.1 3696352 3697731 R SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: shm:Shewmr7_0539 serine/threonine protein kinase; serine/threonine protein kinase complement(3696352..3697731) Shewanella halifaxensis HAW-EB4 5906623 YP_001675236.1 CDS Shal_3029 NC_010334.1 3697883 3698647 R PFAM: protein of unknown function DUF599; KEGG: slo:Shew_2715 protein of unknown function DUF599; hypothetical protein complement(3697883..3698647) Shewanella halifaxensis HAW-EB4 5906625 YP_001675237.1 CDS Shal_3030 NC_010334.1 3698740 3698901 R KEGG: slo:Shew_2719 hypothetical protein; hypothetical protein complement(3698740..3698901) Shewanella halifaxensis HAW-EB4 5906626 YP_001675238.1 CDS Shal_3031 NC_010334.1 3699113 3699340 D KEGG: shm:Shewmr7_2754 hypothetical protein; hypothetical protein 3699113..3699340 Shewanella halifaxensis HAW-EB4 5906830 YP_001675239.1 CDS Shal_3032 NC_010334.1 3699487 3700257 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0630 conserved hypothetical protein 245; hypothetical protein complement(3699487..3700257) Shewanella halifaxensis HAW-EB4 5906831 YP_001675240.1 CDS Shal_3033 NC_010334.1 3700477 3701700 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3700477..3701700 Shewanella halifaxensis HAW-EB4 5904166 YP_001675241.1 CDS Shal_3034 NC_010334.1 3701859 3702551 D KEGG: sfr:Sfri_3204 nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 3701859..3702551 Shewanella halifaxensis HAW-EB4 5904167 YP_001675242.1 CDS Shal_3035 NC_010334.1 3702680 3703447 D PFAM: protein of unknown function DUF633; KEGG: sbm:Shew185_2328 hypothetical protein; hypothetical protein 3702680..3703447 Shewanella halifaxensis HAW-EB4 5903848 YP_001675243.1 CDS Shal_3036 NC_010334.1 3703523 3704092 D PFAM: NUDIX hydrolase; KEGG: slo:Shew_2723 NUDIX hydrolase; NUDIX hydrolase 3703523..3704092 Shewanella halifaxensis HAW-EB4 5903849 YP_001675244.1 CDS Shal_3037 NC_010334.1 3704150 3704542 R KEGG: sde:Sde_0094 hypothetical protein; hypothetical protein complement(3704150..3704542) Shewanella halifaxensis HAW-EB4 5903741 YP_001675245.1 CDS Shal_3038 NC_010334.1 3704866 3706095 R PFAM: sodium/glutamate symporter; KEGG: psa:PST_0687 sodium-glutamate symporter; sodium/glutamate symporter complement(3704866..3706095) Shewanella halifaxensis HAW-EB4 5903742 YP_001675246.1 CDS Shal_3039 NC_010334.1 3706687 3707955 D PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3503 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3706687..3707955 Shewanella halifaxensis HAW-EB4 5903984 YP_001675247.1 CDS Shal_3040 NC_010334.1 3708054 3708968 R PFAM: Indigoidine synthase A family protein; KEGG: slo:Shew_2724 indigoidine synthase A family protein; indigoidine synthase A family protein complement(3708054..3708968) Shewanella halifaxensis HAW-EB4 5903985 YP_001675248.1 CDS Shal_3041 NC_010334.1 3708962 3710053 R PFAM: PfkB domain protein; Helix-turn-helix type 11 domain protein; KEGG: slo:Shew_2725 PfkB domain protein; ribokinase-like domain-containing protein complement(3708962..3710053) Shewanella halifaxensis HAW-EB4 5903530 YP_001675249.1 CDS Shal_3042 NC_010334.1 3710670 3712415 R TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: vfi:VF1065 integral membrane protein with TrkA domains; YidE/YbjL protein complement(3710670..3712415) Shewanella halifaxensis HAW-EB4 5903531 YP_001675250.1 CDS Shal_3043 NC_010334.1 3712822 3714216 R TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: vfi:VF1064 glutamate decarboxylase; glutamate decarboxylase complement(3712822..3714216) Shewanella halifaxensis HAW-EB4 5903962 YP_001675251.1 CDS Shal_3044 NC_010334.1 3714715 3715041 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sdn:Sden_2795 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3714715..3715041 Shewanella halifaxensis HAW-EB4 5903963 YP_001675252.1 CDS Shal_3045 NC_010334.1 3715177 3715383 R KEGG: cps:CPS_3943 hypothetical protein; hypothetical protein complement(3715177..3715383) Shewanella halifaxensis HAW-EB4 5903654 YP_001675253.1 CDS Shal_3046 NC_010334.1 3715665 3716120 R PFAM: protein of unknown function DUF188; KEGG: slo:Shew_2726 protein of unknown function DUF188; hypothetical protein complement(3715665..3716120) Shewanella halifaxensis HAW-EB4 5903655 YP_001675254.1 CDS Shal_3047 NC_010334.1 3716286 3716963 D PFAM: conserved hypothetical protein; KEGG: sbl:Sbal_1396 hypothetical protein; hypothetical protein 3716286..3716963 Shewanella halifaxensis HAW-EB4 5905373 YP_001675255.1 CDS Shal_3048 NC_010334.1 3717090 3718439 D PFAM: Fmu (Sun) domain protein; KEGG: sfr:Sfri_1209 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 3717090..3718439 Shewanella halifaxensis HAW-EB4 5905374 YP_001675256.1 CDS Shal_3049 NC_010334.1 3718584 3719123 R PFAM: YfaZ family protein; KEGG: slo:Shew_2740 YfaZ family protein; hypothetical protein complement(3718584..3719123) Shewanella halifaxensis HAW-EB4 5905993 YP_001675257.1 CDS Shal_3050 NC_010334.1 3719542 3720621 D KEGG: slo:Shew_3409 putative lipoprotein; putative lipoprotein 3719542..3720621 Shewanella halifaxensis HAW-EB4 5905994 YP_001675258.1 CDS Shal_3051 NC_010334.1 3720791 3721273 D PFAM: glutathione peroxidase; KEGG: sfr:Sfri_2764 glutathione peroxidase; glutathione peroxidase 3720791..3721273 Shewanella halifaxensis HAW-EB4 5906712 YP_001675259.1 CDS pyrB NC_010334.1 3721710 3722642 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3721710..3722642 Shewanella halifaxensis HAW-EB4 5906713 YP_001675260.1 CDS Shal_3053 NC_010334.1 3722642 3723100 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 3722642..3723100 Shewanella halifaxensis HAW-EB4 5903804 YP_001675261.1 CDS Shal_3054 NC_010334.1 3723417 3723557 R KEGG: ppr:PBPRA0992 hypothetical transcriptional regulator; putative transcriptional regulator complement(3723417..3723557) Shewanella halifaxensis HAW-EB4 5903805 YP_001675262.1 CDS Shal_3055 NC_010334.1 3724682 3726463 R PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: slo:Shew_2742 peptidase M1, membrane alanine aminopeptidase; peptidase M1 membrane alanine aminopeptidase complement(3724682..3726463) Shewanella halifaxensis HAW-EB4 5903670 YP_001675263.1 CDS Shal_3056 NC_010334.1 3726575 3727471 D PFAM: Peptidase M9A collagenase domain protein; KEGG: slo:Shew_2743 microbial collagenase; collagenase 3726575..3727471 Shewanella halifaxensis HAW-EB4 5903671 YP_001675264.1 CDS Shal_3057 NC_010334.1 3727989 3728960 R TIGRFAM: phosphate binding protein; KEGG: slo:Shew_2747 phosphate binding protein; phosphate-binding protein complement(3727989..3728960) Shewanella halifaxensis HAW-EB4 5903652 YP_001675265.1 CDS Shal_3058 NC_010334.1 3729152 3730462 R KEGG: son:SO_1559 phosphate regulon sensor protein PhoR; TIGRFAM: Phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing signal transduction histidine kinase complement(3729152..3730462) Shewanella halifaxensis HAW-EB4 5903653 YP_001675266.1 CDS Shal_3059 NC_010334.1 3730537 3731226 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_2749 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3730537..3731226) Shewanella halifaxensis HAW-EB4 5904038 YP_001675267.1 CDS Shal_3060 NC_010334.1 3731454 3732404 R PFAM: porin Gram-negative type; KEGG: slo:Shew_2750 porin, gram-negative type; porin complement(3731454..3732404) Shewanella halifaxensis HAW-EB4 5904039 YP_001675268.1 CDS rdgC NC_010334.1 3732693 3733604 D Required for efficient pilin antigenic variation; recombination associated protein 3732693..3733604 Shewanella halifaxensis HAW-EB4 5903735 YP_001675269.1 CDS Shal_3062 NC_010334.1 3733687 3735492 R PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: sbm:Shew185_1361 peptidase M61 domain protein; peptidase M61 domain-containing protein complement(3733687..3735492) Shewanella halifaxensis HAW-EB4 5903736 YP_001675270.1 CDS Shal_3063 NC_010334.1 3735621 3737798 D SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2781 TPR repeat-containing protein; tetratricopeptide domain-containing protein 3735621..3737798 Shewanella halifaxensis HAW-EB4 5903672 YP_001675271.1 CDS Shal_3064 NC_010334.1 3737918 3739474 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbm:Shew185_1359 diguanylate cyclase; diguanylate cyclase 3737918..3739474 Shewanella halifaxensis HAW-EB4 5903673 YP_001675272.1 CDS Shal_3065 NC_010334.1 3739554 3740906 D PFAM: conserved hypothetical protein; KEGG: sdn:Sden_2557 conserved hypothetical protein 730; hypothetical protein 3739554..3740906 Shewanella halifaxensis HAW-EB4 5903111 YP_001675273.1 CDS xni NC_010334.1 3740916 3741674 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3740916..3741674 Shewanella halifaxensis HAW-EB4 5903112 YP_001675274.1 CDS Shal_3067 NC_010334.1 3741787 3742173 D KEGG: slo:Shew_2757 hypothetical protein; hypothetical protein 3741787..3742173 Shewanella halifaxensis HAW-EB4 5904719 YP_001675275.1 CDS Shal_3068 NC_010334.1 3742935 3745742 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: slo:Shew_2759 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(3742935..3745742) Shewanella halifaxensis HAW-EB4 5904720 YP_001675276.1 CDS Shal_3069 NC_010334.1 3745984 3746994 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3745984..3746994 Shewanella halifaxensis HAW-EB4 5904676 YP_001675277.1 CDS Shal_3070 NC_010334.1 3747157 3748239 R KEGG: slo:Shew_2761 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(3747157..3748239) Shewanella halifaxensis HAW-EB4 5904677 YP_001675278.1 CDS Shal_3071 NC_010334.1 3748502 3748888 R PFAM: protein of unknown function DUF423; KEGG: slo:Shew_2762 protein of unknown function DUF423; hypothetical protein complement(3748502..3748888) Shewanella halifaxensis HAW-EB4 5904669 YP_001675279.1 CDS Shal_3072 NC_010334.1 3748971 3749705 R KEGG: slo:Shew_2763 dienelactone hydrolase; dienelactone hydrolase complement(3748971..3749705) Shewanella halifaxensis HAW-EB4 5904670 YP_001675280.1 CDS Shal_3073 NC_010334.1 3749686 3750597 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3749686..3750597) Shewanella halifaxensis HAW-EB4 5904567 YP_001675281.1 CDS Shal_3074 NC_010334.1 3750778 3751011 D KEGG: slo:Shew_2765 hypothetical protein; hypothetical protein 3750778..3751011 Shewanella halifaxensis HAW-EB4 5904568 YP_001675282.1 CDS Shal_3075 NC_010334.1 3751163 3752617 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3751163..3752617) Shewanella halifaxensis HAW-EB4 5904491 YP_001675283.1 CDS motB NC_010334.1 3752807 3753775 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(3752807..3753775) Shewanella halifaxensis HAW-EB4 5904492 YP_001675284.1 CDS Shal_3077 NC_010334.1 3753780 3754547 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(3753780..3754547) Shewanella halifaxensis HAW-EB4 5904402 YP_001675285.1 CDS Shal_3078 NC_010334.1 3754982 3755230 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sbl:Sbal_1359 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3754982..3755230 Shewanella halifaxensis HAW-EB4 5904403 YP_001675286.1 CDS Shal_3079 NC_010334.1 3755231 3756112 D PFAM: Polyprenyl synthetase; KEGG: slo:Shew_2770 polyprenyl synthetase; polyprenyl synthetase 3755231..3756112 Shewanella halifaxensis HAW-EB4 5904394 YP_001675287.1 CDS Shal_3080 NC_010334.1 3756135 3758000 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3756135..3758000 Shewanella halifaxensis HAW-EB4 5904395 YP_001675288.1 CDS Shal_3081 NC_010334.1 3758119 3758721 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3758119..3758721) Shewanella halifaxensis HAW-EB4 5904324 YP_001675289.1 CDS ppnK NC_010334.1 3758770 3759699 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3758770..3759699 Shewanella halifaxensis HAW-EB4 5904325 YP_001675290.1 CDS Shal_3083 NC_010334.1 3760423 3762066 D PFAM: L-lactate permease; KEGG: slo:Shew_3135 L-lactate permease; L-lactate permease 3760423..3762066 Shewanella halifaxensis HAW-EB4 5903325 YP_001675291.1 CDS Shal_3084 NC_010334.1 3762170 3764989 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: shn:Shewana3_2905 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3762170..3764989 Shewanella halifaxensis HAW-EB4 5903326 YP_001675292.1 CDS Shal_3085 NC_010334.1 3765370 3766113 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: slo:Shew_3004 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 3765370..3766113 Shewanella halifaxensis HAW-EB4 5904198 YP_001675293.1 CDS Shal_3086 NC_010334.1 3766122 3767495 D PFAM: protein of unknown function DUF162; KEGG: slo:Shew_3005 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hypothetical protein 3766122..3767495 Shewanella halifaxensis HAW-EB4 5904199 YP_001675294.1 CDS Shal_3087 NC_010334.1 3767499 3768068 D PFAM: protein of unknown function DUF162; KEGG: shm:Shewmr7_2816 protein of unknown function DUF162; hypothetical protein 3767499..3768068 Shewanella halifaxensis HAW-EB4 5903263 YP_001675295.1 CDS Shal_3088 NC_010334.1 3768156 3769301 R TIGRFAM: TonB family protein; KEGG: spc:Sputcn32_0632 TonB family protein; TonB family protein complement(3768156..3769301) Shewanella halifaxensis HAW-EB4 5903264 YP_001675296.1 CDS Shal_3089 NC_010334.1 3769546 3770922 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO_1506 MATE efflux family protein; MATE efflux family protein complement(3769546..3770922) Shewanella halifaxensis HAW-EB4 5902669 YP_001675297.1 CDS Shal_3090 NC_010334.1 3771037 3772146 R PFAM: cobalamin synthesis protein P47K; KEGG: spc:Sputcn32_1255 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(3771037..3772146) Shewanella halifaxensis HAW-EB4 5902670 YP_001675298.1 CDS Shal_3091 NC_010334.1 3772289 3772624 R KEGG: gsu:GSU0757 lipoprotein, putative; hypothetical protein complement(3772289..3772624) Shewanella halifaxensis HAW-EB4 5907053 YP_001675299.1 CDS Shal_3092 NC_010334.1 3772671 3772838 R KEGG: cps:CPS_2486 hypothetical protein; hypothetical protein complement(3772671..3772838) Shewanella halifaxensis HAW-EB4 5907054 YP_001675300.1 CDS Shal_3093 NC_010334.1 3773021 3774445 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_2850 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3773021..3774445) Shewanella halifaxensis HAW-EB4 5902974 YP_001675301.1 CDS Shal_3094 NC_010334.1 3774461 3777514 R KEGG: slo:Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3774461..3777514) Shewanella halifaxensis HAW-EB4 5902975 YP_001675302.1 CDS Shal_3095 NC_010334.1 3777992 3778432 R PFAM: OsmC family protein; KEGG: shn:Shewana3_1075 OsmC family protein; OsmC family protein complement(3777992..3778432) Shewanella halifaxensis HAW-EB4 5902711 YP_001675303.1 CDS Shal_3097 NC_010334.1 3778886 3779362 D PFAM: thioesterase superfamily protein; KEGG: slo:Shew_2780 thioesterase superfamily protein; thioesterase superfamily protein 3778886..3779362 Shewanella halifaxensis HAW-EB4 5902655 YP_001675304.1 CDS Shal_3098 NC_010334.1 3779437 3780912 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spc:Sputcn32_2800 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(3779437..3780912) Shewanella halifaxensis HAW-EB4 5902656 YP_001675305.1 CDS Shal_3099 NC_010334.1 3781038 3781880 R PFAM: Metal-dependent hydrolase HDOD; KEGG: saz:Sama_1005 putative signal transduction protein; putative signal transduction protein complement(3781038..3781880) Shewanella halifaxensis HAW-EB4 5903013 YP_001675306.1 CDS Shal_3100 NC_010334.1 3782169 3783536 D PFAM: peptidase U32; KEGG: sfr:Sfri_1022 peptidase U32; peptidase U32 3782169..3783536 Shewanella halifaxensis HAW-EB4 5903014 YP_001675307.1 CDS Shal_3101 NC_010334.1 3783660 3784916 R PFAM: Carbohydrate-selective porin OprB; KEGG: cps:CPS_0267 hypothetical protein; carbohydrate-selective porin OprB complement(3783660..3784916) Shewanella halifaxensis HAW-EB4 5904821 YP_001675308.1 CDS Shal_3102 NC_010334.1 3784964 3785698 R KEGG: vha:VIBHAR_05705 hypothetical protein; hypothetical protein complement(3784964..3785698) Shewanella halifaxensis HAW-EB4 5904822 YP_001675309.1 CDS Shal_3103 NC_010334.1 3785914 3786732 R KEGG: vha:VIBHAR_06184 hypothetical protein; hypothetical protein complement(3785914..3786732) Shewanella halifaxensis HAW-EB4 5904758 YP_001675310.1 CDS Shal_3104 NC_010334.1 3786729 3787292 R KEGG: slo:Shew_0983 amidohydrolase; amidohydrolase complement(3786729..3787292) Shewanella halifaxensis HAW-EB4 5904759 YP_001675311.1 CDS Shal_3105 NC_010334.1 3787532 3788542 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB0224 hypothetical protein; AraC family transcriptional regulator complement(3787532..3788542) Shewanella halifaxensis HAW-EB4 5904666 YP_001675312.1 CDS Shal_3106 NC_010334.1 3788813 3789070 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3788813..3789070 Shewanella halifaxensis HAW-EB4 5904667 YP_001675313.1 CDS Shal_3107 NC_010334.1 3789301 3791019 D PFAM: pseudouridine synthase; KEGG: slo:Shew_2529 pseudouridine synthase; pseudouridine synthase 3789301..3791019 Shewanella halifaxensis HAW-EB4 5904811 YP_001675314.1 CDS Shal_3108 NC_010334.1 3791185 3791697 R PFAM: Sterol-binding domain protein; KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein complement(3791185..3791697) Shewanella halifaxensis HAW-EB4 5904812 YP_001675315.1 CDS Shal_3109 NC_010334.1 3791830 3792831 D PFAM: peptidase U32; KEGG: slo:Shew_2787 peptidase U32; peptidase U32 3791830..3792831 Shewanella halifaxensis HAW-EB4 5904976 YP_001675316.1 CDS Shal_3110 NC_010334.1 3792841 3793698 D PFAM: peptidase U32; KEGG: slo:Shew_2788 peptidase U32; peptidase U32 3792841..3793698 Shewanella halifaxensis HAW-EB4 5904977 YP_001675317.1 CDS Shal_3111 NC_010334.1 3794213 3795346 D TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfr:Sfri_3427 alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase 3794213..3795346 Shewanella halifaxensis HAW-EB4 5905148 YP_001675318.1 CDS Shal_3112 NC_010334.1 3795554 3796258 R KEGG: shn:Shewana3_1063 hypothetical protein; hypothetical protein complement(3795554..3796258) Shewanella halifaxensis HAW-EB4 5905149 YP_001675319.1 CDS Shal_3113 NC_010334.1 3796741 3797064 D KEGG: shw:Sputw3181_2968 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3796741..3797064 Shewanella halifaxensis HAW-EB4 5905176 YP_001675320.1 CDS Shal_3114 NC_010334.1 3797422 3798777 D PFAM: nucleoside recognition domain protein; KEGG: slo:Shew_2790 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 3797422..3798777 Shewanella halifaxensis HAW-EB4 5905177 YP_001675321.1 CDS Shal_3115 NC_010334.1 3799220 3800578 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_2795 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(3799220..3800578) Shewanella halifaxensis HAW-EB4 5903406 YP_001675322.1 CDS Shal_3116 NC_010334.1 3801028 3802341 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbl:Sbal_1252 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3801028..3802341) Shewanella halifaxensis HAW-EB4 5903407 YP_001675323.1 CDS Shal_3117 NC_010334.1 3802509 3803696 D KEGG: vfi:VF2363 glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase 3802509..3803696 Shewanella halifaxensis HAW-EB4 5905247 YP_001675324.1 CDS Shal_3118 NC_010334.1 3803894 3804439 D KEGG: vvy:VVA1400 hypothetical protein; hypothetical protein 3803894..3804439 Shewanella halifaxensis HAW-EB4 5905248 YP_001675325.1 CDS Shal_3119 NC_010334.1 3804599 3804973 D PFAM: type IV pilus assembly PilZ; KEGG: saz:Sama_0982 hypothetical protein; type IV pilus assembly PilZ 3804599..3804973 Shewanella halifaxensis HAW-EB4 5905476 YP_001675326.1 CDS Shal_3120 NC_010334.1 3805066 3806439 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3805066..3806439) Shewanella halifaxensis HAW-EB4 5905477 YP_001675327.1 CDS Shal_3121 NC_010334.1 3806592 3809033 D PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_2808 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3806592..3809033 Shewanella halifaxensis HAW-EB4 5905408 YP_001675328.1 CDS Shal_3122 NC_010334.1 3809127 3809579 R KEGG: vco:VC0395_A1179 hypothetical protein; hypothetical protein complement(3809127..3809579) Shewanella halifaxensis HAW-EB4 5905409 YP_001675329.1 CDS Shal_3123 NC_010334.1 3809998 3810729 D PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0471 DedA family protein; hypothetical protein 3809998..3810729 Shewanella halifaxensis HAW-EB4 5905498 YP_001675330.1 CDS Shal_3124 NC_010334.1 3810870 3812696 R PFAM: sulfatase; KEGG: shw:Sputw3181_0059 sulfatase; sulfatase complement(3810870..3812696) Shewanella halifaxensis HAW-EB4 5905499 YP_001675331.1 CDS Shal_3125 NC_010334.1 3812968 3813915 R PFAM: Polysulphide reductase NrfD; KEGG: shm:Shewmr7_0509 polysulphide reductase, NrfD; polysulfide reductase NrfD complement(3812968..3813915) Shewanella halifaxensis HAW-EB4 5905528 YP_001675332.1 CDS Shal_3126 NC_010334.1 3813912 3814484 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_3618 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3813912..3814484) Shewanella halifaxensis HAW-EB4 5905529 YP_001675333.1 CDS Shal_3127 NC_010334.1 3814497 3816773 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0531 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(3814497..3816773) Shewanella halifaxensis HAW-EB4 5905523 YP_001675334.1 CDS Shal_3128 NC_010334.1 3817116 3818900 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shn:Shewana3_3696 ATP-binding region, ATPase domain protein domain protein; histidine kinase complement(3817116..3818900) Shewanella halifaxensis HAW-EB4 5905524 YP_001675335.1 CDS Shal_3129 NC_010334.1 3819129 3819740 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shw:Sputw3181_3638 response regulator receiver protein; two component LuxR family transcriptional regulator 3819129..3819740 Shewanella halifaxensis HAW-EB4 5905545 YP_001675336.1 CDS Shal_3130 NC_010334.1 3819844 3820752 R KEGG: she:Shewmr4_1043 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3819844..3820752) Shewanella halifaxensis HAW-EB4 5905546 YP_001675337.1 CDS Shal_3131 NC_010334.1 3820991 3821998 R KEGG: sbm:Shew185_3223 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB complement(3820991..3821998) Shewanella halifaxensis HAW-EB4 5905793 YP_001675338.1 CDS Shal_3132 NC_010334.1 3822077 3823558 D KEGG: she:Shewmr4_1041 membrane protein; membrane protein 3822077..3823558 Shewanella halifaxensis HAW-EB4 5905794 YP_001675339.1 CDS deoD NC_010334.1 3823670 3824380 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(3823670..3824380) Shewanella halifaxensis HAW-EB4 5905686 YP_001675340.1 CDS Shal_3134 NC_010334.1 3824481 3825701 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(3824481..3825701) Shewanella halifaxensis HAW-EB4 5905687 YP_001675341.1 CDS deoA NC_010334.1 3825715 3827046 R Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase complement(3825715..3827046) Shewanella halifaxensis HAW-EB4 5905584 YP_001675342.1 CDS Shal_3136 NC_010334.1 3827209 3827982 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(3827209..3827982) Shewanella halifaxensis HAW-EB4 5905585 YP_001675343.1 CDS Shal_3137 NC_010334.1 3828561 3829421 R PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: son:SO_1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein Tsx complement(3828561..3829421) Shewanella halifaxensis HAW-EB4 5906519 YP_001675344.1 CDS Shal_3138 NC_010334.1 3829758 3831017 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sbm:Shew185_3232 nucleoside transporter; nucleoside transporter complement(3829758..3831017) Shewanella halifaxensis HAW-EB4 5906520 YP_001675345.1 CDS Shal_3139 NC_010334.1 3831197 3831970 R PFAM: TatD-related deoxyribonuclease; KEGG: saz:Sama_0970 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(3831197..3831970) Shewanella halifaxensis HAW-EB4 5906478 YP_001675346.1 CDS prfC NC_010334.1 3832323 3833903 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(3832323..3833903) Shewanella halifaxensis HAW-EB4 5906479 YP_001675347.1 CDS Shal_3141 NC_010334.1 3834066 3834959 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3834066..3834959) Shewanella halifaxensis HAW-EB4 5906119 YP_001675348.1 CDS Shal_3142 NC_010334.1 3835129 3837243 R KEGG: slo:Shew_2822 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3835129..3837243) Shewanella halifaxensis HAW-EB4 5906120 YP_001675349.1 CDS Shal_3143 NC_010334.1 3837437 3839482 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sbm:Shew185_3276 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3837437..3839482 Shewanella halifaxensis HAW-EB4 5906281 YP_001675350.1 CDS rpsO NC_010334.1 3839546 3839815 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3839546..3839815) Shewanella halifaxensis HAW-EB4 5906282 YP_001675351.1 CDS truB NC_010334.1 3839936 3840883 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3839936..3840883) Shewanella halifaxensis HAW-EB4 5906221 YP_001675352.1 CDS rbfA NC_010334.1 3840883 3841311 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3840883..3841311) Shewanella halifaxensis HAW-EB4 5906222 YP_001675353.1 CDS infB NC_010334.1 3841373 3844054 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3841373..3844054) Shewanella halifaxensis HAW-EB4 5905368 YP_001675354.1 CDS nusA NC_010334.1 3844083 3845582 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3844083..3845582) Shewanella halifaxensis HAW-EB4 5905369 YP_001675355.1 CDS Shal_3149 NC_010334.1 3845610 3846065 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3845610..3846065) Shewanella halifaxensis HAW-EB4 5904691 YP_001675356.1 CDS secG NC_010334.1 3846607 3846942 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: slo:Shew_2830 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(3846607..3846942) Shewanella halifaxensis HAW-EB4 5905109 YP_001675357.1 CDS Shal_3151 NC_010334.1 3846944 3847726 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3846944..3847726) Shewanella halifaxensis HAW-EB4 5905772 YP_001675358.1 CDS glmM NC_010334.1 3847936 3849273 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3847936..3849273) Shewanella halifaxensis HAW-EB4 5905773 YP_001675359.1 CDS Shal_3153 NC_010334.1 3849355 3850143 R KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(3849355..3850143) Shewanella halifaxensis HAW-EB4 5905398 YP_001675360.1 CDS Shal_3154 NC_010334.1 3850256 3852208 R KEGG: slo:Shew_2834 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(3850256..3852208) Shewanella halifaxensis HAW-EB4 5905399 YP_001675361.1 CDS rrmJ NC_010334.1 3852269 3852898 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3852269..3852898) Shewanella halifaxensis HAW-EB4 5903384 YP_001675362.1 CDS Shal_3156 NC_010334.1 3852992 3853291 D PFAM: protein of unknown function UPF0044; KEGG: slo:Shew_2836 protein of unknown function UPF0044; hypothetical protein 3852992..3853291 Shewanella halifaxensis HAW-EB4 5903385 YP_001675363.1 CDS Shal_3157 NC_010334.1 3853673 3854581 R TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sbm:Shew185_3291 protein-export membrane protein SecF; protein-export membrane protein SecF complement(3853673..3854581) Shewanella halifaxensis HAW-EB4 5902762 YP_001675364.1 CDS secD NC_010334.1 3854583 3856397 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3854583..3856397) Shewanella halifaxensis HAW-EB4 5902763 YP_001675365.1 CDS Shal_3159 NC_010334.1 3856813 3857304 R KEGG: sfr:Sfri_0978 hypothetical protein; hypothetical protein complement(3856813..3857304) Shewanella halifaxensis HAW-EB4 5903466 YP_001675366.1 CDS Shal_3160 NC_010334.1 3857497 3857958 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shn:Shewana3_1017 transcription elongation factor GreA; transcription elongation factor GreA complement(3857497..3857958) Shewanella halifaxensis HAW-EB4 5903467 YP_001675367.1 CDS carB NC_010334.1 3858297 3861518 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(3858297..3861518) Shewanella halifaxensis HAW-EB4 5903230 YP_001675368.1 CDS Shal_3162 NC_010334.1 3861547 3862692 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(3861547..3862692) Shewanella halifaxensis HAW-EB4 5903231 YP_001675369.1 CDS Shal_3163 NC_010334.1 3862895 3863710 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(3862895..3863710) Shewanella halifaxensis HAW-EB4 5902891 YP_001675370.1 CDS Shal_3164 NC_010334.1 3863774 3864391 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_2841 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(3863774..3864391) Shewanella halifaxensis HAW-EB4 5902892 YP_001675371.1 CDS Shal_3165 NC_010334.1 3864475 3865275 R PFAM: peptidase M48 Ste24p; KEGG: shn:Shewana3_0964 peptidase M48, Ste24p; peptidase M48 Ste24p complement(3864475..3865275) Shewanella halifaxensis HAW-EB4 5904823 YP_001675372.1 CDS Shal_3166 NC_010334.1 3865383 3866513 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(3865383..3866513) Shewanella halifaxensis HAW-EB4 5904824 YP_001675373.1 CDS dnaK NC_010334.1 3866609 3868525 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(3866609..3868525) Shewanella halifaxensis HAW-EB4 5904807 YP_001675374.1 CDS Shal_3168 NC_010334.1 3868833 3869747 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_2845 protein of unknown function DUF6, transmembrane; hypothetical protein 3868833..3869747 Shewanella halifaxensis HAW-EB4 5904808 YP_001675375.1 CDS proA NC_010334.1 3870319 3871587 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3870319..3871587) Shewanella halifaxensis HAW-EB4 5904756 YP_001675376.1 CDS Shal_3170 NC_010334.1 3871584 3872702 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3871584..3872702) Shewanella halifaxensis HAW-EB4 5904757 YP_001675377.1 CDS Shal_3171 NC_010334.1 3872971 3874260 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: saz:Sama_2517 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease complement(3872971..3874260) Shewanella halifaxensis HAW-EB4 5903306 YP_001675378.1 CDS Shal_3172 NC_010334.1 3875325 3877370 R PFAM: pentapeptide repeat protein; KEGG: vpa:VPA1301 hypothetical protein; pentapeptide repeat-containing protein complement(3875325..3877370) Shewanella halifaxensis HAW-EB4 5903307 YP_001675379.1 CDS Shal_3173 NC_010334.1 3877927 3878904 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(3877927..3878904) Shewanella halifaxensis HAW-EB4 5904485 YP_001675380.1 CDS Shal_3174 NC_010334.1 3879332 3879430 R KEGG: shw:Sputw3181_3220 hypothetical protein; hypothetical protein complement(3879332..3879430) Shewanella halifaxensis HAW-EB4 5904486 YP_001675381.1 CDS Shal_3175 NC_010334.1 3880735 3882195 D KEGG: slo:Shew_2852 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3880735..3882195 Shewanella halifaxensis HAW-EB4 5904413 YP_001675382.1 CDS Shal_3176 NC_010334.1 3882284 3883360 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3882284..3883360) Shewanella halifaxensis HAW-EB4 5904414 YP_001675383.1 CDS Shal_3177 NC_010334.1 3883489 3883737 R hypothetical protein complement(3883489..3883737) Shewanella halifaxensis HAW-EB4 5904390 YP_001675384.1 CDS Shal_3178 NC_010334.1 3883961 3884428 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: slo:Shew_2872 bacterioferritin; bacterioferritin complement(3883961..3884428) Shewanella halifaxensis HAW-EB4 5904391 YP_001675385.1 CDS Shal_3179 NC_010334.1 3884441 3884908 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: sdn:Sden_0990 bacterioferritin; bacterioferritin complement(3884441..3884908) Shewanella halifaxensis HAW-EB4 5903343 YP_001675386.1 CDS Shal_3180 NC_010334.1 3885282 3885503 R PFAM: protein of unknown function DUF539; KEGG: slo:Shew_2874 protein of unknown function DUF539; hypothetical protein complement(3885282..3885503) Shewanella halifaxensis HAW-EB4 5903344 YP_001675387.1 CDS Shal_3181 NC_010334.1 3885516 3886532 R PFAM: ApbE family lipoprotein; KEGG: sbm:Shew185_3432 ApbE family lipoprotein; ApbE family lipoprotein complement(3885516..3886532) Shewanella halifaxensis HAW-EB4 5902860 YP_001675388.1 CDS Shal_3182 NC_010334.1 3886662 3887909 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3886662..3887909) Shewanella halifaxensis HAW-EB4 5902861 YP_001675389.1 CDS Shal_3183 NC_010334.1 3887955 3888563 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3887955..3888563) Shewanella halifaxensis HAW-EB4 5903396 YP_001675390.1 CDS Shal_3184 NC_010334.1 3888569 3889201 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3888569..3889201) Shewanella halifaxensis HAW-EB4 5903397 YP_001675391.1 CDS Shal_3185 NC_010334.1 3889201 3889998 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3889201..3889998) Shewanella halifaxensis HAW-EB4 5903208 YP_001675392.1 CDS Shal_3186 NC_010334.1 3889991 3891190 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3889991..3891190) Shewanella halifaxensis HAW-EB4 5903209 YP_001675393.1 CDS Shal_3187 NC_010334.1 3891190 3892530 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3891190..3892530) Shewanella halifaxensis HAW-EB4 5903826 YP_001675394.1 CDS Shal_3188 NC_010334.1 3893211 3893720 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3893211..3893720) Shewanella halifaxensis HAW-EB4 5903827 YP_001675395.1 CDS Shal_3189 NC_010334.1 3894066 3894386 R PFAM: BolA family protein; KEGG: slo:Shew_2883 BolA family protein; BolA family protein complement(3894066..3894386) Shewanella halifaxensis HAW-EB4 5903278 YP_001675396.1 CDS Shal_3190 NC_010334.1 3894495 3895169 R KEGG: slo:Shew_2885 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(3894495..3895169) Shewanella halifaxensis HAW-EB4 5903279 YP_001675397.1 CDS Shal_3191 NC_010334.1 3895241 3896539 D PFAM: methyltransferase small; KEGG: shw:Sputw3181_3242 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3895241..3896539 Shewanella halifaxensis HAW-EB4 5903290 YP_001675398.1 CDS Shal_3192 NC_010334.1 3896646 3897710 R KEGG: shw:Sputw3181_3349 hypothetical protein; hypothetical protein complement(3896646..3897710) Shewanella halifaxensis HAW-EB4 5903291 YP_001675399.1 CDS Shal_3193 NC_010334.1 3897938 3898495 R KEGG: shm:Shewmr7_0816 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein complement(3897938..3898495) Shewanella halifaxensis HAW-EB4 5904948 YP_001675400.1 CDS Shal_3194 NC_010334.1 3898703 3899275 D PFAM: Uncharacterized lipoprotein; KEGG: slo:Shew_2889 uncharacterized lipoprotein; hypothetical protein 3898703..3899275 Shewanella halifaxensis HAW-EB4 5904949 YP_001675401.1 CDS Shal_3195 NC_010334.1 3899307 3899903 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sfr:Sfri_3112 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3899307..3899903 Shewanella halifaxensis HAW-EB4 5905047 YP_001675402.1 CDS Shal_3196 NC_010334.1 3900032 3900352 D KEGG: slo:Shew_2891 hypothetical protein; hypothetical protein 3900032..3900352 Shewanella halifaxensis HAW-EB4 5905048 YP_001675403.1 CDS Shal_3197 NC_010334.1 3900568 3901998 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_2892 major facilitator superfamily MFS_1; major facilitator transporter 3900568..3901998 Shewanella halifaxensis HAW-EB4 5905105 YP_001675404.1 CDS Shal_3198 NC_010334.1 3902158 3902643 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(3902158..3902643) Shewanella halifaxensis HAW-EB4 5905106 YP_001675405.1 CDS Shal_3199 NC_010334.1 3902745 3903173 D PFAM: VanZ family protein; KEGG: shw:Sputw3181_3356 VanZ family protein; VanZ family protein 3902745..3903173 Shewanella halifaxensis HAW-EB4 5905129 YP_001675406.1 CDS Shal_3200 NC_010334.1 3903180 3904151 D KEGG: slo:Shew_2895 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3903180..3904151 Shewanella halifaxensis HAW-EB4 5905130 YP_001675407.1 CDS Shal_3201 NC_010334.1 3904326 3905822 D PFAM: sodium:neurotransmitter symporter; KEGG: ppr:PBPRA1510 putative sodium-dependent transporter; sodium:neurotransmitter symporter 3904326..3905822 Shewanella halifaxensis HAW-EB4 5905300 YP_001675408.1 CDS Shal_3202 NC_010334.1 3906052 3907254 R hypothetical protein complement(3906052..3907254) Shewanella halifaxensis HAW-EB4 5905301 YP_001675409.1 CDS Shal_3203 NC_010334.1 3907428 3908129 D PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_2901 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 3907428..3908129 Shewanella halifaxensis HAW-EB4 5905421 YP_001675410.1 CDS Shal_3204 NC_010334.1 3908292 3908492 R hypothetical protein complement(3908292..3908492) Shewanella halifaxensis HAW-EB4 5905422 YP_001675411.1 CDS Shal_3205 NC_010334.1 3908524 3910086 R PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: saz:Sama_3423 transporter; putative transporter AbgT complement(3908524..3910086) Shewanella halifaxensis HAW-EB4 5905419 YP_001675412.1 CDS Shal_3206 NC_010334.1 3910297 3911145 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3910297..3911145) Shewanella halifaxensis HAW-EB4 5905420 YP_001675413.1 CDS Shal_3207 NC_010334.1 3911215 3912483 R PFAM: protein of unknown function DUF819; KEGG: slo:Shew_2905 protein of unknown function DUF819; hypothetical protein complement(3911215..3912483) Shewanella halifaxensis HAW-EB4 5905381 YP_001675414.1 CDS Shal_3208 NC_010334.1 3912689 3913477 R KEGG: slo:Shew_2906 hypothetical protein; hypothetical protein complement(3912689..3913477) Shewanella halifaxensis HAW-EB4 5905382 YP_001675415.1 CDS Shal_3209 NC_010334.1 3913477 3913872 R PFAM: Invasion gene expression up-regulator SirB; KEGG: son:SO_3830 hypothetical protein; invasion gene expression up-regulator SirB complement(3913477..3913872) Shewanella halifaxensis HAW-EB4 5905565 YP_001675416.1 CDS Shal_3210 NC_010334.1 3914196 3915038 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: slo:Shew_2911 modification methylase, HemK family; HemK family modification methylase complement(3914196..3915038) Shewanella halifaxensis HAW-EB4 5905566 YP_001675417.1 CDS prfA NC_010334.1 3915086 3916171 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3915086..3916171) Shewanella halifaxensis HAW-EB4 5905573 YP_001675418.1 CDS hemA NC_010334.1 3916185 3917435 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(3916185..3917435) Shewanella halifaxensis HAW-EB4 5905574 YP_001675419.1 CDS Shal_3213 NC_010334.1 3917705 3918364 D PFAM: outer membrane lipoprotein LolB; KEGG: she:Shewmr4_3171 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3917705..3918364 Shewanella halifaxensis HAW-EB4 5905504 YP_001675420.1 CDS ipk NC_010334.1 3918361 3919215 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3918361..3919215 Shewanella halifaxensis HAW-EB4 5905505 YP_001675421.1 CDS Shal_3215 NC_010334.1 3919253 3920227 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3919253..3920227 Shewanella halifaxensis HAW-EB4 5905516 YP_001675422.1 CDS Shal_3216 NC_010334.1 3920322 3920738 R KEGG: slo:Shew_2917 hypothetical protein; hypothetical protein complement(3920322..3920738) Shewanella halifaxensis HAW-EB4 5905517 YP_001675423.1 CDS Shal_3217 NC_010334.1 3920784 3921242 R KEGG: slo:Shew_2918 hypothetical protein; hypothetical protein complement(3920784..3921242) Shewanella halifaxensis HAW-EB4 5905760 YP_001675424.1 CDS Shal_3218 NC_010334.1 3923358 3924449 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3923358..3924449) Shewanella halifaxensis HAW-EB4 5906134 YP_001675425.1 CDS Shal_3219 NC_010334.1 3924503 3925087 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3924503..3925087) Shewanella halifaxensis HAW-EB4 5907004 YP_001675426.1 CDS Shal_3220 NC_010334.1 3925399 3926598 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: slo:Shew_2921 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3925399..3926598) Shewanella halifaxensis HAW-EB4 5907005 YP_001675427.1 CDS Shal_3221 NC_010334.1 3926937 3927251 D KEGG: sbm:Shew185_3302 hypothetical protein; hypothetical protein 3926937..3927251 Shewanella halifaxensis HAW-EB4 5906843 YP_001675428.1 CDS Shal_3222 NC_010334.1 3927348 3928775 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3927348..3928775 Shewanella halifaxensis HAW-EB4 5906844 YP_001675429.1 CDS Shal_3223 NC_010334.1 3928957 3929997 D PFAM: PhoH family protein; KEGG: slo:Shew_2924 PhoH family protein; PhoH family protein 3928957..3929997 Shewanella halifaxensis HAW-EB4 5906743 YP_001675430.1 CDS Shal_3224 NC_010334.1 3929990 3930460 D PFAM: protein of unknown function UPF0054; KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease 3929990..3930460 Shewanella halifaxensis HAW-EB4 5906744 YP_001675431.1 CDS Shal_3225 NC_010334.1 3930470 3931369 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: slo:Shew_2926 CBS domain containing protein; hypothetical protein 3930470..3931369 Shewanella halifaxensis HAW-EB4 5906725 YP_001675432.1 CDS lnt NC_010334.1 3931408 3932961 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3931408..3932961 Shewanella halifaxensis HAW-EB4 5906726 YP_001675433.1 CDS Shal_3227 NC_010334.1 3933107 3933607 R PFAM: protein of unknown function DUF1451; KEGG: slo:Shew_2928 protein of unknown function DUF1451; hypothetical protein complement(3933107..3933607) Shewanella halifaxensis HAW-EB4 5906672 YP_001675434.1 CDS leuS NC_010334.1 3933701 3936307 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3933701..3936307 Shewanella halifaxensis HAW-EB4 5906673 YP_001675435.1 CDS Shal_3229 NC_010334.1 3936341 3936835 D PFAM: Rare lipoprotein B; KEGG: slo:Shew_2930 rare lipoprotein B; rare lipoprotein B 3936341..3936835 Shewanella halifaxensis HAW-EB4 5906580 YP_001675436.1 CDS Shal_3230 NC_010334.1 3936835 3937866 D KEGG: slo:Shew_2931 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3936835..3937866 Shewanella halifaxensis HAW-EB4 5906581 YP_001675437.1 CDS Shal_3231 NC_010334.1 3937885 3938535 D KEGG: sbm:Shew185_3314 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3937885..3938535 Shewanella halifaxensis HAW-EB4 5906466 YP_001675438.1 CDS Shal_3232 NC_010334.1 3938634 3938963 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sbm:Shew185_3315 iojap-like protein; iojap family protein 3938634..3938963 Shewanella halifaxensis HAW-EB4 5906467 YP_001675439.1 CDS Shal_3233 NC_010334.1 3938963 3939433 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3938963..3939433 Shewanella halifaxensis HAW-EB4 5906430 YP_001675440.1 CDS Shal_3234 NC_010334.1 3939518 3941371 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: slo:Shew_2935 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 3939518..3941371 Shewanella halifaxensis HAW-EB4 5906431 YP_001675441.1 CDS Shal_3235 NC_010334.1 3941371 3942477 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: slo:Shew_2936 rod shape-determining protein RodA; rod shape-determining protein RodA 3941371..3942477 Shewanella halifaxensis HAW-EB4 5906418 YP_001675442.1 CDS Shal_3236 NC_010334.1 3942615 3943613 D TIGRFAM: lytic murein transglycosylase B; KEGG: sbm:Shew185_3319 lytic murein transglycosylase B; lytic murein transglycosylase B 3942615..3943613 Shewanella halifaxensis HAW-EB4 5906419 YP_001675443.1 CDS Shal_3237 NC_010334.1 3943600 3944382 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: slo:Shew_2938 rare lipoprotein A; rare lipoprotein A 3943600..3944382 Shewanella halifaxensis HAW-EB4 5906415 YP_001675444.1 CDS Shal_3238 NC_010334.1 3944487 3945659 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: slo:Shew_2939 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3944487..3945659 Shewanella halifaxensis HAW-EB4 5906416 YP_001675445.1 CDS Shal_3239 NC_010334.1 3945792 3946058 D PFAM: protein of unknown function DUF493; KEGG: saz:Sama_2593 hypothetical protein; hypothetical protein 3945792..3946058 Shewanella halifaxensis HAW-EB4 5906344 YP_001675446.1 CDS lipB NC_010334.1 3946153 3946812 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3946153..3946812 Shewanella halifaxensis HAW-EB4 5906345 YP_001675447.1 CDS Shal_3241 NC_010334.1 3946805 3947770 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3946805..3947770 Shewanella halifaxensis HAW-EB4 5906311 YP_001675448.1 CDS Shal_3242 NC_010334.1 3947870 3948307 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_0987 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(3947870..3948307) Shewanella halifaxensis HAW-EB4 5906312 YP_001675449.1 CDS Shal_3243 NC_010334.1 3948307 3948654 R KEGG: sfr:Sfri_0690 hypothetical protein; hypothetical protein complement(3948307..3948654) Shewanella halifaxensis HAW-EB4 5906166 YP_001675450.1 CDS Shal_3244 NC_010334.1 3956620 3957132 D KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein 3956620..3957132 Shewanella halifaxensis HAW-EB4 5905284 YP_001675451.1 CDS Shal_3245 NC_010334.1 3957211 3957555 R KEGG: slo:Shew_2947 hypothetical protein; hypothetical protein complement(3957211..3957555) Shewanella halifaxensis HAW-EB4 5905232 YP_001675452.1 CDS Shal_3246 NC_010334.1 3957850 3960423 R PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shw:Sputw3181_3141 ATPase AAA-2 domain protein; ATPase complement(3957850..3960423) Shewanella halifaxensis HAW-EB4 5905233 YP_001675453.1 CDS Shal_3247 NC_010334.1 3960639 3961385 R PFAM: protein of unknown function DUF152; KEGG: slo:Shew_2949 protein of unknown function DUF152; hypothetical protein complement(3960639..3961385) Shewanella halifaxensis HAW-EB4 5904929 YP_001675454.1 CDS Shal_3248 NC_010334.1 3961382 3962356 R KEGG: slo:Shew_2950 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(3961382..3962356) Shewanella halifaxensis HAW-EB4 5904930 YP_001675455.1 CDS Shal_3249 NC_010334.1 3962434 3963240 D KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein 3962434..3963240 Shewanella halifaxensis HAW-EB4 5904865 YP_001675456.1 CDS Shal_3250 NC_010334.1 3963365 3965494 R KEGG: vvu:VV1_2366 predicted exporter of the RND superfamily; exporter of the RND superfamily protein-like protein complement(3963365..3965494) Shewanella halifaxensis HAW-EB4 5904866 YP_001675457.1 CDS Shal_3251 NC_010334.1 3966080 3967942 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: spc:Sputcn32_0796 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3966080..3967942) Shewanella halifaxensis HAW-EB4 5904750 YP_001675458.1 CDS Shal_3252 NC_010334.1 3968183 3969130 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3968183..3969130 Shewanella halifaxensis HAW-EB4 5904703 YP_001675459.1 CDS Shal_3253 NC_010334.1 3969353 3969907 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_2956 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3969353..3969907 Shewanella halifaxensis HAW-EB4 5904580 YP_001675460.1 CDS Shal_3254 NC_010334.1 3969900 3970430 D KEGG: slo:Shew_2957 hypothetical protein; hypothetical protein 3969900..3970430 Shewanella halifaxensis HAW-EB4 5904581 YP_001675461.1 CDS Shal_3255 NC_010334.1 3970433 3971374 D KEGG: sfr:Sfri_0844 hypothetical protein; hypothetical protein 3970433..3971374 Shewanella halifaxensis HAW-EB4 5904505 YP_001675462.1 CDS Shal_3256 NC_010334.1 3971649 3972341 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3383 pseudouridine synthase; pseudouridine synthase complement(3971649..3972341) Shewanella halifaxensis HAW-EB4 5904506 YP_001675463.1 CDS Shal_3257 NC_010334.1 3972472 3973092 D KEGG: slo:Shew_2974 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 3972472..3973092 Shewanella halifaxensis HAW-EB4 5904406 YP_001675464.1 CDS Shal_3258 NC_010334.1 3973326 3975410 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: shw:Sputw3181_3384 endothelin-converting enzyme 1; endothelin-converting protein 1 3973326..3975410 Shewanella halifaxensis HAW-EB4 5904407 YP_001675465.1 CDS Shal_3259 NC_010334.1 3975616 3976401 D KEGG: she:Shewmr4_3180 hypothetical protein; hypothetical protein 3975616..3976401 Shewanella halifaxensis HAW-EB4 5905415 YP_001675466.1 CDS Shal_3260 NC_010334.1 3976753 3977157 D KEGG: slo:Shew_2971 hypothetical protein; hypothetical protein 3976753..3977157 Shewanella halifaxensis HAW-EB4 5905416 YP_001675467.1 CDS Shal_3261 NC_010334.1 3977211 3977711 D KEGG: slo:Shew_2970 hypothetical protein; hypothetical protein 3977211..3977711 Shewanella halifaxensis HAW-EB4 5905646 YP_001675468.1 CDS Shal_3262 NC_010334.1 3977993 3978616 R PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_2968 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(3977993..3978616) Shewanella halifaxensis HAW-EB4 5905647 YP_001675469.1 CDS Shal_3263 NC_010334.1 3978830 3979369 D PFAM: membrane-flanked domain; KEGG: sfr:Sfri_0836 membrane-flanked domain; membrane-flanked domain-containing protein 3978830..3979369 Shewanella halifaxensis HAW-EB4 5905103 YP_001675470.1 CDS Shal_3264 NC_010334.1 3979472 3980737 D KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter 3979472..3980737 Shewanella halifaxensis HAW-EB4 5905104 YP_001675471.1 CDS Shal_3265 NC_010334.1 3980761 3981960 D PFAM: beta-lactamase; KEGG: son:SO_0914 hypothetical protein; beta-lactamase 3980761..3981960 Shewanella halifaxensis HAW-EB4 5905333 YP_001675472.1 CDS Shal_3266 NC_010334.1 3982046 3982519 D PFAM: protein of unknown function DUF1456; KEGG: slo:Shew_2963 protein of unknown function DUF1456; hypothetical protein 3982046..3982519 Shewanella halifaxensis HAW-EB4 5905334 YP_001675473.1 CDS Shal_3267 NC_010334.1 3983240 3984928 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3983240..3984928 Shewanella halifaxensis HAW-EB4 5903878 YP_001675474.1 CDS Shal_3268 NC_010334.1 3985317 3985937 R hypothetical protein complement(3985317..3985937) Shewanella halifaxensis HAW-EB4 5903879 YP_001675475.1 CDS Shal_3269 NC_010334.1 3985945 3987003 R PFAM: protein of unknown function DUF262; KEGG: pen:PSEEN5223 hypothetical protein; hypothetical protein complement(3985945..3987003) Shewanella halifaxensis HAW-EB4 5905964 YP_001675476.1 CDS Shal_3270 NC_010334.1 3988181 3988759 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3558 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3988181..3988759) Shewanella halifaxensis HAW-EB4 5905965 YP_001675477.1 CDS Shal_3271 NC_010334.1 3988843 3991113 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0608 molybdopterin oxidoreductase; nitrate reductase complement(3988843..3991113) Shewanella halifaxensis HAW-EB4 5906811 YP_001675478.1 CDS Shal_3272 NC_010334.1 3991804 3992241 R KEGG: slo:Shew_2976 hypothetical protein; hypothetical protein complement(3991804..3992241) Shewanella halifaxensis HAW-EB4 5906812 YP_001675479.1 CDS Shal_3273 NC_010334.1 3992373 3992897 R PFAM: phosphoesterase PA-phosphatase related; KEGG: sbm:Shew185_3636 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(3992373..3992897) Shewanella halifaxensis HAW-EB4 5906849 YP_001675480.1 CDS Shal_3274 NC_010334.1 3993085 3994968 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2977 diguanylate cyclase; diguanylate cyclase 3993085..3994968 Shewanella halifaxensis HAW-EB4 5906850 YP_001675481.1 CDS Shal_3275 NC_010334.1 3995079 3996323 D TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: slo:Shew_2979 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster-binding protein 3995079..3996323 Shewanella halifaxensis HAW-EB4 5906855 YP_001675482.1 CDS Shal_3276 NC_010334.1 3996365 3996577 R PFAM: protein of unknown function DUF1458; KEGG: sfr:Sfri_0829 protein of unknown function DUF1458; hypothetical protein complement(3996365..3996577) Shewanella halifaxensis HAW-EB4 5906856 YP_001675483.1 CDS Shal_3277 NC_010334.1 3996712 3997221 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mxa:MXAN_5223 4-carboxymuconolactone decarboxylase domain protein; alkylhydroperoxidase complement(3996712..3997221) Shewanella halifaxensis HAW-EB4 5905551 YP_001675484.1 CDS Shal_3278 NC_010334.1 3997363 3998256 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1577 hypothetical transcriptional regulator; LysR family transcriptional regulator 3997363..3998256 Shewanella halifaxensis HAW-EB4 5905552 YP_001675485.1 CDS Shal_3279 NC_010334.1 3998367 3998960 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sbm:Shew185_4223 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(3998367..3998960) Shewanella halifaxensis HAW-EB4 5903997 YP_001675486.1 CDS Shal_3280 NC_010334.1 3998947 3999681 R PFAM: DSBA oxidoreductase; KEGG: shw:Sputw3181_3957 DsbA oxidoreductase; DSBA oxidoreductase complement(3998947..3999681) Shewanella halifaxensis HAW-EB4 5903998 YP_001675487.1 CDS Shal_3281 NC_010334.1 3999804 4001861 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: sbm:Shew185_4225 cytochrome c biogenesis protein transmembrane region; cytochrome c biogenesis protein transmembrane region complement(3999804..4001861) Shewanella halifaxensis HAW-EB4 5903868 YP_001675488.1 CDS Shal_3282 NC_010334.1 4002041 4002391 R KEGG: shw:Sputw3181_3959 hypothetical protein; hypothetical protein complement(4002041..4002391) Shewanella halifaxensis HAW-EB4 5903869 YP_001675489.1 CDS Shal_3283 NC_010334.1 4002900 4003802 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_3641 transcriptional regulator, LysR family; LysR family transcriptional regulator 4002900..4003802 Shewanella halifaxensis HAW-EB4 5903946 YP_001675490.1 CDS Shal_3284 NC_010334.1 4003876 4004604 R PFAM: Metal-dependent hydrolase HDOD; KEGG: slo:Shew_2988 putative signal transduction protein; putative signal transduction protein complement(4003876..4004604) Shewanella halifaxensis HAW-EB4 5903947 YP_001675491.1 CDS Shal_3285 NC_010334.1 4004853 4005464 R PFAM: lipolytic protein G-D-S-L family; KEGG: saz:Sama_2630 lipolytic enzyme, G-D-S-L; GDSL family lipase complement(4004853..4005464) Shewanella halifaxensis HAW-EB4 5904071 YP_001675492.1 CDS Shal_3286 NC_010334.1 4005552 4007405 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1162 TonB-dependent vitamin B12 receptor; TonB-dependent receptor plug complement(4005552..4007405) Shewanella halifaxensis HAW-EB4 5904072 YP_001675493.1 CDS Shal_3287 NC_010334.1 4008084 4008605 R PFAM: NADPH-dependent FMN reductase; KEGG: cps:CPS_1243 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase complement(4008084..4008605) Shewanella halifaxensis HAW-EB4 5903553 YP_001675494.1 CDS Shal_3288 NC_010334.1 4008833 4009744 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_1244 transcriptional regulator, LysR family; LysR family transcriptional regulator 4008833..4009744 Shewanella halifaxensis HAW-EB4 5904067 YP_001675495.1 CDS Shal_3289 NC_010334.1 4009910 4012078 D SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4009910..4012078 Shewanella halifaxensis HAW-EB4 5904068 YP_001675496.1 CDS Shal_3290 NC_010334.1 4012152 4012868 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ppr:PBPRB1023 hypothetical ribosomal small subunit pseudouridine synthase A; pseudouridine synthase complement(4012152..4012868) Shewanella halifaxensis HAW-EB4 5904063 YP_001675497.1 CDS Shal_3291 NC_010334.1 4013080 4014117 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 4013080..4014117 Shewanella halifaxensis HAW-EB4 5904064 YP_001675498.1 CDS Shal_3292 NC_010334.1 4014418 4014762 D KEGG: slo:Shew_2639 hypothetical protein; hypothetical protein 4014418..4014762 Shewanella halifaxensis HAW-EB4 5903882 YP_001675499.1 CDS Shal_3293 NC_010334.1 4014824 4015603 R KEGG: slo:Shew_3002 hypothetical protein; hypothetical protein complement(4014824..4015603) Shewanella halifaxensis HAW-EB4 5903883 YP_001675500.1 CDS Shal_3294 NC_010334.1 4015773 4016051 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: slo:Shew_3008 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4015773..4016051 Shewanella halifaxensis HAW-EB4 5903838 YP_001675501.1 CDS Shal_3295 NC_010334.1 4016568 4017644 R PFAM: glucose sorbosone dehydrogenase; KEGG: ppr:PBPRB1412 hypothetical glucose dehydrogenase; glucose sorbosone dehydrogenase complement(4016568..4017644) Shewanella halifaxensis HAW-EB4 5903839 YP_001675502.1 CDS Shal_3296 NC_010334.1 4018011 4020005 R PFAM: protein of unknown function DUF1704; KEGG: slo:Shew_2900 protein of unknown function DUF1704; hypothetical protein complement(4018011..4020005) Shewanella halifaxensis HAW-EB4 5903633 YP_001675503.1 CDS Shal_3297 NC_010334.1 4019989 4021008 R The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(4019989..4021008) Shewanella halifaxensis HAW-EB4 5903634 YP_001675504.1 CDS Shal_3298 NC_010334.1 4021430 4022494 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VV2684 GGDEF family protein; diguanylate cyclase complement(4021430..4022494) Shewanella halifaxensis HAW-EB4 5904200 YP_001675505.1 CDS Shal_3299 NC_010334.1 4022835 4024382 D PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger CDGSH-type domain protein; KEGG: cps:CPS_1903 glutamate synthase domain protein; ferredoxin-dependent glutamate synthase 4022835..4024382 Shewanella halifaxensis HAW-EB4 5904201 YP_001675506.1 CDS Shal_3300 NC_010334.1 4024454 4025044 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: sbl:Sbal_1573 HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD family hydrolase complement(4024454..4025044) Shewanella halifaxensis HAW-EB4 5903944 YP_001675507.1 CDS Shal_3301 NC_010334.1 4025093 4027666 R KEGG: sfr:Sfri_0910 UTP-GlnB uridylyltransferase, GlnD; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; GlnD PII-uridylyltransferase; protein-P-II uridylyltransferase complement(4025093..4027666) Shewanella halifaxensis HAW-EB4 5903945 YP_001675508.1 CDS Shal_3302 NC_010334.1 4028098 4028523 D KEGG: sdn:Sden_2069 hypothetical protein; hypothetical protein 4028098..4028523 Shewanella halifaxensis HAW-EB4 5903964 YP_001675509.1 CDS Shal_3303 NC_010334.1 4028551 4029504 R KEGG: pin:Ping_2245 hypothetical protein; hypothetical protein complement(4028551..4029504) Shewanella halifaxensis HAW-EB4 5903965 YP_001675510.1 CDS Shal_3304 NC_010334.1 4029786 4031255 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: slo:Shew_3327 RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase complement(4029786..4031255) Shewanella halifaxensis HAW-EB4 5903938 YP_001675511.1 CDS Shal_3305 NC_010334.1 4031520 4032710 R KEGG: slo:Shew_2655 hypothetical protein; hypothetical protein complement(4031520..4032710) Shewanella halifaxensis HAW-EB4 5903939 YP_001675512.1 CDS Shal_3306 NC_010334.1 4033385 4033627 D KEGG: ppr:PBPRB0452 hypothetical protein; hypothetical protein 4033385..4033627 Shewanella halifaxensis HAW-EB4 5904128 YP_001675513.1 CDS Shal_3307 NC_010334.1 4034026 4034922 D PFAM: band 7 protein; KEGG: slo:Shew_0978 band 7 protein; hypothetical protein 4034026..4034922 Shewanella halifaxensis HAW-EB4 5904129 YP_001675514.1 CDS Shal_3308 NC_010334.1 4035002 4035571 R KEGG: slo:Shew_1730 hypothetical protein; hypothetical protein complement(4035002..4035571) Shewanella halifaxensis HAW-EB4 5903745 YP_001675515.1 CDS Shal_3309 NC_010334.1 4036002 4037744 D KEGG: vha:VIBHAR_05537 hypothetical protein; hypothetical protein 4036002..4037744 Shewanella halifaxensis HAW-EB4 5903746 YP_001675516.1 CDS Shal_3310 NC_010334.1 4038007 4040085 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: sfr:Sfri_1958 endothelin-converting enzyme 1; endothelin-converting protein 1 4038007..4040085 Shewanella halifaxensis HAW-EB4 5903887 YP_001675517.1 CDS Shal_3311 NC_010334.1 4040338 4041195 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 4040338..4041195 Shewanella halifaxensis HAW-EB4 5903888 YP_001675518.1 CDS Shal_3312 NC_010334.1 4041282 4041767 R PFAM: protein of unknown function DUF985; KEGG: spc:Sputcn32_3190 protein of unknown function DUF985; hypothetical protein complement(4041282..4041767) Shewanella halifaxensis HAW-EB4 5905587 YP_001675519.1 CDS Shal_3313 NC_010334.1 4042015 4042263 R KEGG: slo:Shew_3030 hypothetical protein; hypothetical protein complement(4042015..4042263) Shewanella halifaxensis HAW-EB4 5905588 YP_001675520.1 CDS Shal_3314 NC_010334.1 4042547 4043911 D KEGG: vfi:VFA0969 guanine deaminase; TIGRFAM: Guanine deaminase; PFAM: amidohydrolase; guanine deaminase 4042547..4043911 Shewanella halifaxensis HAW-EB4 5905762 YP_001675521.1 CDS Shal_3315 NC_010334.1 4044020 4045405 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aha:AHA_0949 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease complement(4044020..4045405) Shewanella halifaxensis HAW-EB4 5905763 YP_001675522.1 CDS Shal_3316 NC_010334.1 4045811 4046563 D PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM family protein 4045811..4046563 Shewanella halifaxensis HAW-EB4 5906127 YP_001675523.1 CDS Shal_3317 NC_010334.1 4046675 4047829 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_3855 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein complement(4046675..4047829) Shewanella halifaxensis HAW-EB4 5906128 YP_001675524.1 CDS Shal_3318 NC_010334.1 4047834 4049432 R PFAM: BCCT transporter; KEGG: vha:VIBHAR_03056 hypothetical protein; BCCT transporter complement(4047834..4049432) Shewanella halifaxensis HAW-EB4 5906061 YP_001675525.1 CDS Shal_3319 NC_010334.1 4049531 4050886 R PFAM: FAD dependent oxidoreductase; KEGG: msm:MSMEG_3987 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(4049531..4050886) Shewanella halifaxensis HAW-EB4 5906062 YP_001675526.1 CDS Shal_3320 NC_010334.1 4051065 4051712 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rru:Rru_A3003 transcriptional regulator, GntR family; GntR family transcriptional regulator 4051065..4051712 Shewanella halifaxensis HAW-EB4 5903842 YP_001675527.1 CDS Shal_3321 NC_010334.1 4052347 4052886 R KEGG: tva:TVAG_168130 smooth muscle caldesmon, putative Pfam: MAP1B_neuraxin PROSITE: FUMARATE_LYASES ARG_RICH GLU_RICH LYS_RICH SER_RICH; hypothetical protein complement(4052347..4052886) Shewanella halifaxensis HAW-EB4 5903843 YP_001675528.1 CDS Shal_3322 NC_010334.1 4053246 4054469 D PFAM: sodium/glutamate symporter; KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter 4053246..4054469 Shewanella halifaxensis HAW-EB4 5903791 YP_001675529.1 CDS Shal_3324 NC_010334.1 4056376 4057305 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: vfi:VFA0117 transporter, drug/metabolite exporter family; hypothetical protein complement(4056376..4057305) Shewanella halifaxensis HAW-EB4 5903733 YP_001675530.1 CDS Shal_3325 NC_010334.1 4057655 4060528 D KEGG: son:SO_4025 OmpA-like transmembrane domain protein; hypothetical protein 4057655..4060528 Shewanella halifaxensis HAW-EB4 5903734 YP_001675531.1 CDS Shal_3326 NC_010334.1 4060657 4062843 R PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: sbl:Sbal_0643 protein of unknown function DUF181; hypothetical protein complement(4060657..4062843) Shewanella halifaxensis HAW-EB4 5903692 YP_001675532.1 CDS Shal_3327 NC_010334.1 4063106 4063336 R KEGG: sbl:Sbal_0642 hypothetical protein; hypothetical protein complement(4063106..4063336) Shewanella halifaxensis HAW-EB4 5903693 YP_001675533.1 CDS Shal_3328 NC_010334.1 4063739 4065355 R PFAM: carbohydrate kinase FGGY; KEGG: maq:Maqu_1344 carbohydrate kinase, FGGY; carbohydrate kinase FGGY complement(4063739..4065355) Shewanella halifaxensis HAW-EB4 5903650 YP_001675534.1 CDS Shal_3329 NC_010334.1 4065352 4066989 R PFAM: FAD dependent oxidoreductase; KEGG: maq:Maqu_1345 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(4065352..4066989) Shewanella halifaxensis HAW-EB4 5903651 YP_001675535.1 CDS Shal_3330 NC_010334.1 4066986 4068629 R PFAM: FAD linked oxidase domain protein; KEGG: pap:PSPA7_2132 hypothetical protein; alkylglycerone-phosphate synthase complement(4066986..4068629) Shewanella halifaxensis HAW-EB4 5903648 YP_001675536.1 CDS Shal_3331 NC_010334.1 4068751 4069797 D SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_1557 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 4068751..4069797 Shewanella halifaxensis HAW-EB4 5903649 YP_001675537.1 CDS Shal_3332 NC_010334.1 4069926 4071122 R PFAM: Ankyrin; KEGG: tva:TVAG_291510 ankyrin repeat protein, putative Pfam: Ank Clathrin PROSITE: ANK_REPEAT ANK_REP_REGION; ankyrin complement(4069926..4071122) Shewanella halifaxensis HAW-EB4 5903528 YP_001675538.1 CDS Shal_3333 NC_010334.1 4071329 4071730 R KEGG: sbm:Shew185_3668 hypothetical protein; hypothetical protein complement(4071329..4071730) Shewanella halifaxensis HAW-EB4 5903529 YP_001675539.1 CDS Shal_3334 NC_010334.1 4071981 4073564 R PFAM: Na+/H+ antiporter NhaC; KEGG: vco:VC0395_1016 hypothetical protein; Na+/H+ antiporter NhaC complement(4071981..4073564) Shewanella halifaxensis HAW-EB4 5903889 YP_001675540.1 CDS Shal_3335 NC_010334.1 4074103 4076070 R KEGG: slo:Shew_2580 hypothetical protein; hypothetical protein complement(4074103..4076070) Shewanella halifaxensis HAW-EB4 5903890 YP_001675541.1 CDS Shal_3336 NC_010334.1 4076925 4077113 D KEGG: slo:Shew_1222 hypothetical protein; hypothetical protein 4076925..4077113 Shewanella halifaxensis HAW-EB4 5903966 YP_001675542.1 CDS Shal_3337 NC_010334.1 4077635 4077844 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB1929 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein 4077635..4077844 Shewanella halifaxensis HAW-EB4 5903967 YP_001675543.1 CDS Shal_3338 NC_010334.1 4078208 4078417 D KEGG: vfi:VFA1093 hypothetical protein; hypothetical protein 4078208..4078417 Shewanella halifaxensis HAW-EB4 5903970 YP_001675544.1 CDS Shal_3339 NC_010334.1 4078719 4079804 R KEGG: son:SO_2929 hypothetical protein; hypothetical protein complement(4078719..4079804) Shewanella halifaxensis HAW-EB4 5903971 YP_001675545.1 CDS Shal_3340 NC_010334.1 4080023 4080520 R PFAM: protein of unknown function UPF0066; KEGG: sfu:Sfum_0270 protein of unknown function UPF0066; hypothetical protein complement(4080023..4080520) Shewanella halifaxensis HAW-EB4 5904009 YP_001675546.1 CDS Shal_3341 NC_010334.1 4080605 4081795 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase complement(4080605..4081795) Shewanella halifaxensis HAW-EB4 5904010 YP_001675547.1 CDS Shal_3342 NC_010334.1 4082172 4083116 R KEGG: vfi:VF1097 BAX protein; BAX protein complement(4082172..4083116) Shewanella halifaxensis HAW-EB4 5904023 YP_001675548.1 CDS Shal_3343 NC_010334.1 4083285 4084286 R KEGG: vvy:VVA0149 hypothetical protein; hypothetical protein complement(4083285..4084286) Shewanella halifaxensis HAW-EB4 5904024 YP_001675549.1 CDS Shal_3344 NC_010334.1 4084276 4085394 R PFAM: secretion protein HlyD family protein; KEGG: vvu:VV2_1308 multidrug resistance efflux pump; secretion protein HlyD family protein complement(4084276..4085394) Shewanella halifaxensis HAW-EB4 5904027 YP_001675550.1 CDS Shal_3345 NC_010334.1 4085855 4086103 R KEGG: sdn:Sden_0849 hypothetical protein; hypothetical protein complement(4085855..4086103) Shewanella halifaxensis HAW-EB4 5904028 YP_001675551.1 CDS Shal_3346 NC_010334.1 4086529 4086972 D KEGG: cps:CPS_2621 cytochrome c family protein; cytochrome c family protein 4086529..4086972 Shewanella halifaxensis HAW-EB4 5904029 YP_001675552.1 CDS Shal_3347 NC_010334.1 4087628 4088734 R TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vfi:VFA0004 tripeptidase T; peptidase T-like protein complement(4087628..4088734) Shewanella halifaxensis HAW-EB4 5904030 YP_001675553.1 CDS Shal_3348 NC_010334.1 4088948 4089610 R PFAM: protein of unknown function DUF330; KEGG: cps:CPS_3078 putative lipoprotein; hypothetical protein complement(4088948..4089610) Shewanella halifaxensis HAW-EB4 5904085 YP_001675554.1 CDS Shal_3349 NC_010334.1 4089607 4091259 R PFAM: Mammalian cell entry related domain protein; KEGG: cps:CPS_3077 putative paraquat-inducible protein B; hypothetical protein complement(4089607..4091259) Shewanella halifaxensis HAW-EB4 5904086 YP_001675555.1 CDS Shal_3350 NC_010334.1 4091265 4092470 R TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: cps:CPS_3076 integral membrane protein, PqiA family; PqiA family integral membrane protein complement(4091265..4092470) Shewanella halifaxensis HAW-EB4 5904118 YP_001675556.1 CDS Shal_3351 NC_010334.1 4092770 4093201 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: slo:Shew_3055 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 4092770..4093201 Shewanella halifaxensis HAW-EB4 5904119 YP_001675557.1 CDS Shal_3352 NC_010334.1 4093519 4093872 D KEGG: sfr:Sfri_2517 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 4093519..4093872 Shewanella halifaxensis HAW-EB4 5904120 YP_001675558.1 CDS Shal_3353 NC_010334.1 4094097 4094858 R PFAM: protein of unknown function DUF81; KEGG: cvi:CV_2551 probable transmembrane protein; hypothetical protein complement(4094097..4094858) Shewanella halifaxensis HAW-EB4 5904121 YP_001675559.1 CDS Shal_3354 NC_010334.1 4095066 4095542 D PFAM: 17 kDa surface antigen; KEGG: vpa:VP1192 putative outer membrane lipoprotein Pcp; 17 kDa surface antigen 4095066..4095542 Shewanella halifaxensis HAW-EB4 5904158 YP_001675560.1 CDS Shal_3355 NC_010334.1 4096541 4096972 D hypothetical protein 4096541..4096972 Shewanella halifaxensis HAW-EB4 5904159 YP_001675561.1 CDS Shal_3356 NC_010334.1 4097060 4097593 D PFAM: cation antiporter; KEGG: sfr:Sfri_2281 cation antiporter; cation antiporter 4097060..4097593 Shewanella halifaxensis HAW-EB4 5904160 YP_001675562.1 CDS Shal_3357 NC_010334.1 4097593 4097889 D PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 4097593..4097889 Shewanella halifaxensis HAW-EB4 5904161 YP_001675563.1 CDS Shal_3358 NC_010334.1 4097886 4098227 D TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: rba:RB1436 Na+/H+ antiporter; monovalent cation/proton antiporter subunit MnhG/PhaG 4097886..4098227 Shewanella halifaxensis HAW-EB4 5904184 YP_001675564.1 CDS Shal_3359 NC_010334.1 4098305 4099219 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 4098305..4099219 Shewanella halifaxensis HAW-EB4 5904185 YP_001675565.1 CDS Shal_3360 NC_010334.1 4099219 4099587 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: pla:Plav_2968 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L 4099219..4099587 Shewanella halifaxensis HAW-EB4 5903988 YP_001675566.1 CDS Shal_3361 NC_010334.1 4099581 4101059 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 4099581..4101059 Shewanella halifaxensis HAW-EB4 5903989 YP_001675567.1 CDS Shal_3362 NC_010334.1 4101056 4102546 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pla:Plav_2966 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 4101056..4102546 Shewanella halifaxensis HAW-EB4 5903936 YP_001675568.1 CDS Shal_3363 NC_010334.1 4102536 4102970 D KEGG: smd:Smed_3627 hypothetical protein; hypothetical protein 4102536..4102970 Shewanella halifaxensis HAW-EB4 5903937 YP_001675569.1 CDS Shal_3364 NC_010334.1 4102957 4104657 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 4102957..4104657 Shewanella halifaxensis HAW-EB4 5903798 YP_001675570.1 CDS Shal_3365 NC_010334.1 4105001 4105561 D KEGG: vpa:VP1418 hypothetical protein; hypothetical protein 4105001..4105561 Shewanella halifaxensis HAW-EB4 5903799 YP_001675571.1 CDS Shal_3366 NC_010334.1 4105732 4106091 D hypothetical protein 4105732..4106091 Shewanella halifaxensis HAW-EB4 5903698 YP_001675572.1 CDS Shal_3367 NC_010334.1 4106539 4107993 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aha:AHA_2229 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4106539..4107993 Shewanella halifaxensis HAW-EB4 5903699 YP_001675573.1 CDS ushA NC_010334.1 4108305 4110023 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 4108305..4110023 Shewanella halifaxensis HAW-EB4 5903694 YP_001675574.1 CDS Shal_3369 NC_010334.1 4110175 4111017 R KEGG: dde:Dde_3309 ABC transporter, periplasmic substrate-binding protein, putative; ABC transporter periplasmic substrate-binding protein complement(4110175..4111017) Shewanella halifaxensis HAW-EB4 5903695 YP_001675575.1 CDS Shal_3370 NC_010334.1 4112198 4112542 D hypothetical protein 4112198..4112542 Shewanella halifaxensis HAW-EB4 5903666 YP_001675576.1 CDS Shal_3371 NC_010334.1 4112600 4113652 D PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 4112600..4113652 Shewanella halifaxensis HAW-EB4 5903667 YP_001675577.1 CDS Shal_3372 NC_010334.1 4113682 4114113 R KEGG: slo:Shew_3059 hypothetical protein; hypothetical protein complement(4113682..4114113) Shewanella halifaxensis HAW-EB4 5903476 YP_001675578.1 CDS Shal_3373 NC_010334.1 4114377 4117277 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(4114377..4117277) Shewanella halifaxensis HAW-EB4 5903477 YP_001675579.1 CDS Shal_3374 NC_010334.1 4117455 4117844 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(4117455..4117844) Shewanella halifaxensis HAW-EB4 5903482 YP_001675580.1 CDS gcvT NC_010334.1 4118267 4119361 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(4118267..4119361) Shewanella halifaxensis HAW-EB4 5903483 YP_001675581.1 CDS Shal_3376 NC_010334.1 4119680 4120900 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: slo:Shew_3065 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(4119680..4120900) Shewanella halifaxensis HAW-EB4 5903484 YP_001675582.1 CDS Shal_3377 NC_010334.1 4120997 4122349 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: slo:Shew_3066 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase complement(4120997..4122349) Shewanella halifaxensis HAW-EB4 5903485 YP_001675583.1 CDS Shal_3378 NC_010334.1 4122445 4123020 R TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shw:Sputw3181_0727 YecA family protein; yecA family protein complement(4122445..4123020) Shewanella halifaxensis HAW-EB4 5903486 YP_001675584.1 CDS Shal_3379 NC_010334.1 4123438 4123758 D PFAM: protein of unknown function DUF710; KEGG: slo:Shew_3068 protein of unknown function DUF710; hypothetical protein 4123438..4123758 Shewanella halifaxensis HAW-EB4 5903487 YP_001675585.1 CDS Shal_3380 NC_010334.1 4124392 4125852 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sfr:Sfri_3156 glycerophosphoryl diester phosphodiesterase-like protein; glycerophosphoryl diester phosphodiesterase 4124392..4125852 Shewanella halifaxensis HAW-EB4 5903492 YP_001675586.1 CDS Shal_3381 NC_010334.1 4125845 4128319 D KEGG: sfr:Sfri_3157 hypothetical protein; hypothetical protein 4125845..4128319 Shewanella halifaxensis HAW-EB4 5903493 YP_001675587.1 CDS Shal_3382 NC_010334.1 4128345 4130237 D KEGG: sfr:Sfri_3158 hypothetical protein; hypothetical protein 4128345..4130237 Shewanella halifaxensis HAW-EB4 5903488 YP_001675588.1 CDS Shal_3383 NC_010334.1 4130744 4131073 R hypothetical protein complement(4130744..4131073) Shewanella halifaxensis HAW-EB4 5903489 YP_001675589.1 CDS Shal_3384 NC_010334.1 4131422 4131685 D hypothetical protein 4131422..4131685 Shewanella halifaxensis HAW-EB4 5903490 YP_001675590.1 CDS Shal_3385 NC_010334.1 4131919 4132641 D SMART: regulatory protein Crp; KEGG: rme:Rmet_0213 cyclic nucleotide-binding domain (cNMP-BD) protein; CRP/FNR family transcriptional regulator 4131919..4132641 Shewanella halifaxensis HAW-EB4 5903491 YP_001675591.1 CDS Shal_3386 NC_010334.1 4132831 4133460 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: slo:Shew_3069 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 4132831..4133460 Shewanella halifaxensis HAW-EB4 5903498 YP_001675592.1 CDS Shal_3387 NC_010334.1 4133666 4134289 D PFAM: protein of unknown function DUF1326; KEGG: cps:CPS_2422 hypothetical protein; hypothetical protein 4133666..4134289 Shewanella halifaxensis HAW-EB4 5903499 YP_001675593.1 CDS Shal_3388 NC_010334.1 4134337 4135074 D KEGG: cps:CPS_2421 hypothetical protein; hypothetical protein 4134337..4135074 Shewanella halifaxensis HAW-EB4 5903494 YP_001675594.1 CDS Shal_3389 NC_010334.1 4135274 4135942 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(4135274..4135942) Shewanella halifaxensis HAW-EB4 5903495 YP_001675595.1 CDS Shal_3390 NC_010334.1 4136199 4136750 D KEGG: slo:Shew_3074 pilin, putative; pilin 4136199..4136750 Shewanella halifaxensis HAW-EB4 5903496 YP_001675596.1 CDS Shal_3391 NC_010334.1 4136809 4137342 D KEGG: sfr:Sfri_3092 methylation site containing protein; methylation site containing protein 4136809..4137342 Shewanella halifaxensis HAW-EB4 5903497 YP_001675597.1 CDS Shal_3392 NC_010334.1 4137417 4137710 D KEGG: slo:Shew_3075 hypothetical protein; hypothetical protein 4137417..4137710 Shewanella halifaxensis HAW-EB4 5903504 YP_001675598.1 CDS Shal_3393 NC_010334.1 4137827 4138441 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shn:Shewana3_3224 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(4137827..4138441) Shewanella halifaxensis HAW-EB4 5903505 YP_001675599.1 CDS Shal_3394 NC_010334.1 4138696 4139238 D KEGG: son:SO_3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 4138696..4139238 Shewanella halifaxensis HAW-EB4 5903510 YP_001675600.1 CDS Shal_3395 NC_010334.1 4139637 4141235 D PFAM: AMP-dependent synthetase and ligase; KEGG: shw:Sputw3181_3197 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4139637..4141235 Shewanella halifaxensis HAW-EB4 5903511 YP_001675601.1 CDS Shal_3396 NC_010334.1 4141390 4143462 R KEGG: slo:Shew_3087 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(4141390..4143462) Shewanella halifaxensis HAW-EB4 5903512 YP_001675602.1 CDS Shal_3397 NC_010334.1 4143516 4144064 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: shn:Shewana3_3233 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(4143516..4144064) Shewanella halifaxensis HAW-EB4 5903513 YP_001675603.1 CDS Shal_3398 NC_010334.1 4144211 4144735 R PFAM: protein of unknown function DUF1008; KEGG: son:SO_3668 hypothetical protein; hypothetical protein complement(4144211..4144735) Shewanella halifaxensis HAW-EB4 5903514 YP_001675604.1 CDS Shal_3399 NC_010334.1 4144861 4146927 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3201 TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent heme/hemoglobin receptor family protein complement(4144861..4146927) Shewanella halifaxensis HAW-EB4 5903515 YP_001675605.1 CDS Shal_3400 NC_010334.1 4147258 4147956 D TIGRFAM: TonB family protein; KEGG: sbm:Shew185_1020 TonB family protein; TonB family protein 4147258..4147956 Shewanella halifaxensis HAW-EB4 5903526 YP_001675606.1 CDS Shal_3401 NC_010334.1 4148044 4148820 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1019 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4148044..4148820 Shewanella halifaxensis HAW-EB4 5903527 YP_001675607.1 CDS Shal_3402 NC_010334.1 4148817 4149230 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_0787 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4148817..4149230 Shewanella halifaxensis HAW-EB4 5903538 YP_001675608.1 CDS Shal_3403 NC_010334.1 4149336 4150253 D PFAM: periplasmic binding protein; KEGG: sbl:Sbal_0948 periplasmic binding protein; periplasmic-binding protein 4149336..4150253 Shewanella halifaxensis HAW-EB4 5903539 YP_001675609.1 CDS Shal_3404 NC_010334.1 4150312 4151328 D PFAM: transport system permease protein; KEGG: shn:Shewana3_3240 transport system permease protein; transport system permease 4150312..4151328 Shewanella halifaxensis HAW-EB4 5903520 YP_001675610.1 CDS hmuV NC_010334.1 4151331 4152143 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 4151331..4152143 Shewanella halifaxensis HAW-EB4 5903521 YP_001675611.1 CDS Shal_3406 NC_010334.1 4152203 4152784 R PFAM: regulatory protein TetR; KEGG: vfi:VF1676 hypothetical protein; TetR family transcriptional regulator complement(4152203..4152784) Shewanella halifaxensis HAW-EB4 5903524 YP_001675612.1 CDS Shal_3407 NC_010334.1 4152900 4153454 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: vvu:VV2_1034 dihydrofolate reductase; deaminase-reductase domain-containing protein 4152900..4153454 Shewanella halifaxensis HAW-EB4 5903525 YP_001675613.1 CDS Shal_3408 NC_010334.1 4153523 4154023 D PFAM: protein of unknown function DUF218; KEGG: xac:XAC0380 hypothetical protein; hypothetical protein 4153523..4154023 Shewanella halifaxensis HAW-EB4 5903522 YP_001675614.1 CDS Shal_3409 NC_010334.1 4154059 4154970 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pha:PSHAb0015 putative transcriptional regulatory protein (LysR family); LysR family transcriptional regulator complement(4154059..4154970) Shewanella halifaxensis HAW-EB4 5903523 YP_001675615.1 CDS Shal_3410 NC_010334.1 4155116 4155541 D PFAM: transmembrane pair domain protein; KEGG: vfi:VFA1143 hypothetical membrane spanning protein; transmembrane pair domain-containing protein 4155116..4155541 Shewanella halifaxensis HAW-EB4 5903536 YP_001675616.1 CDS Shal_3411 NC_010334.1 4155785 4157197 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4155785..4157197 Shewanella halifaxensis HAW-EB4 5903537 YP_001675617.1 CDS Shal_3412 NC_010334.1 4157278 4157652 D KEGG: slo:Shew_3089 hypothetical protein; hypothetical protein 4157278..4157652 Shewanella halifaxensis HAW-EB4 5903540 YP_001675618.1 CDS Shal_3413 NC_010334.1 4157926 4158096 D PFAM: periplasmic nitrate reductase NapE; KEGG: psa:PST_1270 periplasmic nitrate reductase NapE subunit; periplasmic nitrate reductase NapE 4157926..4158096 Shewanella halifaxensis HAW-EB4 5903541 YP_001675619.1 CDS Shal_3414 NC_010334.1 4158137 4159315 D TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: slo:Shew_2797 trimethylamine-N-oxide reductase C-type cytochrome TorC; trimethylamine-N-oxide reductase c-type cytochrome TorC 4158137..4159315 Shewanella halifaxensis HAW-EB4 5903542 YP_001675620.1 CDS Shal_3415 NC_010334.1 4159330 4161828 D TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; trimethylamine-N-oxide reductase TorA 4159330..4161828 Shewanella halifaxensis HAW-EB4 5903543 YP_001675621.1 CDS torD NC_010334.1 4161825 4162490 D TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4161825..4162490 Shewanella halifaxensis HAW-EB4 5903551 YP_001675622.1 CDS Shal_3417 NC_010334.1 4162586 4165750 R TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase; Hpt sensor hybrid histidine kinase complement(4162586..4165750) Shewanella halifaxensis HAW-EB4 5903552 YP_001675623.1 CDS Shal_3418 NC_010334.1 4165859 4166923 D periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 4165859..4166923 Shewanella halifaxensis HAW-EB4 5903569 YP_001675624.1 CDS Shal_3419 NC_010334.1 4166996 4167706 R response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR complement(4166996..4167706) Shewanella halifaxensis HAW-EB4 5903570 YP_001675625.1 CDS Shal_3420 NC_010334.1 4167894 4168631 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0030 hypothetical protein; hypothetical protein complement(4167894..4168631) Shewanella halifaxensis HAW-EB4 5903556 YP_001675626.1 CDS Shal_3421 NC_010334.1 4168815 4169639 R PFAM: Ion transport protein; KEGG: pha:PSHAb0529 putative cation transporter component; Ion transport protein complement(4168815..4169639) Shewanella halifaxensis HAW-EB4 5903557 YP_001675627.1 CDS Shal_3422 NC_010334.1 4169809 4170105 R KEGG: slo:Shew_3090 hypothetical protein; hypothetical protein complement(4169809..4170105) Shewanella halifaxensis HAW-EB4 5903559 YP_001675628.1 CDS Shal_3423 NC_010334.1 4170335 4171120 D PFAM: membrane-flanked domain; KEGG: slo:Shew_3091 membrane-flanked domain protein; membrane-flanked domain-containing protein 4170335..4171120 Shewanella halifaxensis HAW-EB4 5903560 YP_001675629.1 CDS Shal_3424 NC_010334.1 4171110 4172627 D PFAM: membrane-flanked domain; KEGG: slo:Shew_3092 membrane-flanked domain protein; membrane-flanked domain-containing protein 4171110..4172627 Shewanella halifaxensis HAW-EB4 5903577 YP_001675630.1 CDS Shal_3425 NC_010334.1 4172630 4173208 D PFAM: protein of unknown function DUF924; KEGG: shm:Shewmr7_3145 protein of unknown function DUF924; hypothetical protein 4172630..4173208 Shewanella halifaxensis HAW-EB4 5903578 YP_001675631.1 CDS Shal_3426 NC_010334.1 4173635 4174078 R PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein complement(4173635..4174078) Shewanella halifaxensis HAW-EB4 5903579 YP_001675632.1 CDS Shal_3427 NC_010334.1 4174265 4174696 R PFAM: UspA domain protein; KEGG: slo:Shew_3101 UspA domain protein; UspA domain-containing protein complement(4174265..4174696) Shewanella halifaxensis HAW-EB4 5903580 YP_001675633.1 CDS Shal_3428 NC_010334.1 4174837 4175217 R KEGG: slo:Shew_3102 hypothetical protein; hypothetical protein complement(4174837..4175217) Shewanella halifaxensis HAW-EB4 5903600 YP_001675634.1 CDS Shal_3429 NC_010334.1 4175399 4176826 D PFAM: aldehyde dehydrogenase; KEGG: sbm:Shew185_1007 aldehyde dehydrogenase; aldehyde dehydrogenase 4175399..4176826 Shewanella halifaxensis HAW-EB4 5903601 YP_001675635.1 CDS Shal_3430 NC_010334.1 4176851 4177423 D PFAM: regulatory protein TetR; KEGG: slo:Shew_3104 transcriptional regulator, TetR family; TetR family transcriptional regulator 4176851..4177423 Shewanella halifaxensis HAW-EB4 5903602 YP_001675636.1 CDS Shal_3431 NC_010334.1 4178193 4179563 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: slo:Shew_0727 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(4178193..4179563) Shewanella halifaxensis HAW-EB4 5903603 YP_001675637.1 CDS Shal_3432 NC_010334.1 4179608 4181059 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_0726 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator complement(4179608..4181059) Shewanella halifaxensis HAW-EB4 5903640 YP_001675638.1 CDS Shal_3433 NC_010334.1 4181186 4182397 R PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_3157 protein of unknown function DUF214; hypothetical protein complement(4181186..4182397) Shewanella halifaxensis HAW-EB4 5903641 YP_001675639.1 CDS Shal_3434 NC_010334.1 4182424 4183725 R PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_3158 protein of unknown function DUF214; hypothetical protein complement(4182424..4183725) Shewanella halifaxensis HAW-EB4 5903598 YP_001675640.1 CDS Shal_3435 NC_010334.1 4183747 4184496 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_3692 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4183747..4184496) Shewanella halifaxensis HAW-EB4 5903599 YP_001675641.1 CDS Shal_3436 NC_010334.1 4184569 4184847 R hypothetical protein complement(4184569..4184847) Shewanella halifaxensis HAW-EB4 5903604 YP_001675642.1 CDS Shal_3437 NC_010334.1 4184867 4186129 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_0721 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4184867..4186129) Shewanella halifaxensis HAW-EB4 5903605 YP_001675643.1 CDS Shal_3438 NC_010334.1 4186841 4187998 D PFAM: porin Gram-negative type; KEGG: slo:Shew_2283 porin, gram-negative type; porin 4186841..4187998 Shewanella halifaxensis HAW-EB4 5903606 YP_001675644.1 CDS Shal_3439 NC_010334.1 4188803 4190173 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: esa:ESA_01519 hypothetical protein; nitrite transporter 4188803..4190173 Shewanella halifaxensis HAW-EB4 5903607 YP_001675645.1 CDS Shal_3440 NC_010334.1 4190237 4193986 D KEGG: eca:ECA2031 respiratory nitrate reductase 1 alpha chain; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 4190237..4193986 Shewanella halifaxensis HAW-EB4 5903608 YP_001675646.1 CDS Shal_3441 NC_010334.1 4193983 4195542 D TIGRFAM: nitrate reductase, beta subunit; KEGG: kpn:KPN_02213 nitrate reductase 1, Fe-S (beta) subunit; nitrate reductase subunit beta 4193983..4195542 Shewanella halifaxensis HAW-EB4 5903609 YP_001675647.1 CDS Shal_3442 NC_010334.1 4195535 4196260 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: eca:ECA2033 respiratory nitrate reductase 1 delta chain; nitrate reductase molybdenum cofactor assembly chaperone 4195535..4196260 Shewanella halifaxensis HAW-EB4 5903610 YP_001675648.1 CDS Shal_3443 NC_010334.1 4196266 4196934 D KEGG: esa:ESA_01523 hypothetical protein; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 4196266..4196934 Shewanella halifaxensis HAW-EB4 5903611 YP_001675649.1 CDS Shal_3444 NC_010334.1 4197039 4197209 D KEGG: spc:Sputcn32_2918 transposase, IS4 family protein; hypothetical protein 4197039..4197209 Shewanella halifaxensis HAW-EB4 5903612 YP_001675650.1 CDS Shal_3445 NC_010334.1 4197290 4197418 D KEGG: shn:Shewana3_1487 porin, gram-negative type; porin 4197290..4197418 Shewanella halifaxensis HAW-EB4 5903613 YP_001675651.1 CDS Shal_3446 NC_010334.1 4197560 4199086 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: slo:Shew_2282 transcriptional regulator, fis family; Fis family transcriptional regulator complement(4197560..4199086) Shewanella halifaxensis HAW-EB4 5903614 YP_001675652.1 CDS Shal_3447 NC_010334.1 4200099 4201658 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_2281 flavocytochrome c; flavocytochrome c 4200099..4201658 Shewanella halifaxensis HAW-EB4 5903615 YP_001675653.1 CDS Shal_3448 NC_010334.1 4201725 4203374 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_2280 phenylalanine/histidine ammonia-lyase; phenylalanine/histidine ammonia-lyase 4201725..4203374 Shewanella halifaxensis HAW-EB4 5903616 YP_001675654.1 CDS Shal_3449 NC_010334.1 4203570 4203950 D KEGG: slo:Shew_2279 tetraheme cytochrome c; tetraheme cytochrome c 4203570..4203950 Shewanella halifaxensis HAW-EB4 5903617 YP_001675655.1 CDS Shal_3450 NC_010334.1 4204408 4204791 R KEGG: saz:Sama_2866 hypothetical protein; hypothetical protein complement(4204408..4204791) Shewanella halifaxensis HAW-EB4 5903618 YP_001675656.1 CDS Shal_3451 NC_010334.1 4205134 4205691 R KEGG: ppr:PBPRB0735 hypothetical protein; hypothetical protein complement(4205134..4205691) Shewanella halifaxensis HAW-EB4 5903619 YP_001675657.1 CDS Shal_3452 NC_010334.1 4206148 4206984 R PFAM: periplasmic binding protein; KEGG: shn:Shewana3_3272 periplasmic binding protein; periplasmic-binding protein complement(4206148..4206984) Shewanella halifaxensis HAW-EB4 5903620 YP_001675658.1 CDS Shal_3453 NC_010334.1 4207401 4208018 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(4207401..4208018) Shewanella halifaxensis HAW-EB4 5903621 YP_001675659.1 CDS Shal_3454 NC_010334.1 4208382 4209983 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(4208382..4209983) Shewanella halifaxensis HAW-EB4 5903622 YP_001675660.1 CDS Shal_3455 NC_010334.1 4209996 4210526 R PFAM: cobalbumin biosynthesis protein; KEGG: slo:Shew_0716 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein complement(4209996..4210526) Shewanella halifaxensis HAW-EB4 5903623 YP_001675661.1 CDS Shal_3456 NC_010334.1 4210523 4211302 R TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sbm:Shew185_0978 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase complement(4210523..4211302) Shewanella halifaxensis HAW-EB4 5903624 YP_001675662.1 CDS Shal_3457 NC_010334.1 4211519 4211659 R hypothetical protein complement(4211519..4211659) Shewanella halifaxensis HAW-EB4 5903625 YP_001675663.1 CDS cobT NC_010334.1 4211783 4212811 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(4211783..4212811) Shewanella halifaxensis HAW-EB4 5903642 YP_001675664.1 CDS Shal_3459 NC_010334.1 4212879 4213934 R PFAM: transport system permease protein; KEGG: sbl:Sbal_3365 transport system permease protein; transport system permease complement(4212879..4213934) Shewanella halifaxensis HAW-EB4 5903643 YP_001675665.1 CDS Shal_3460 NC_010334.1 4213927 4214856 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0712 ABC transporter-related protein; ABC transporter-like protein complement(4213927..4214856) Shewanella halifaxensis HAW-EB4 5904590 YP_001675666.1 CDS Shal_3461 NC_010334.1 4215566 4216213 R PFAM: Phosphoglycerate mutase; KEGG: slo:Shew_0711 phosphoglycerate mutase; phosphoglycerate mutase complement(4215566..4216213) Shewanella halifaxensis HAW-EB4 5904591 YP_001675667.1 CDS metH NC_010334.1 4216454 4220236 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4216454..4220236 Shewanella halifaxensis HAW-EB4 5904445 YP_001675668.1 CDS Shal_3464 NC_010334.1 4220872 4221789 D PFAM: Urease accessory protein UreD; KEGG: vfi:VF0676 urease accessory protein UreD; urease accessory protein UreD 4220872..4221789 Shewanella halifaxensis HAW-EB4 5903335 YP_001675669.1 CDS ureA NC_010334.1 4221885 4222187 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 4221885..4222187 Shewanella halifaxensis HAW-EB4 5903336 YP_001675670.1 CDS Shal_3466 NC_010334.1 4222214 4222531 D KEGG: ppf:Pput_2845 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; urease subunit beta 4222214..4222531 Shewanella halifaxensis HAW-EB4 5904741 YP_001675671.1 CDS ureC NC_010334.1 4222534 4224237 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 4222534..4224237 Shewanella halifaxensis HAW-EB4 5904742 YP_001675672.1 CDS Shal_3468 NC_010334.1 4224315 4224833 D PFAM: UreE urease accessory domain protein; KEGG: vfi:VF0672 urease accessory protein UreE; UreE urease accessory domain-containing protein 4224315..4224833 Shewanella halifaxensis HAW-EB4 5904957 YP_001675673.1 CDS Shal_3469 NC_010334.1 4224837 4225520 D PFAM: Urease accessory protein UreF; KEGG: vfi:VF0671 urease accessory protein UreF; urease accessory protein UreF 4224837..4225520 Shewanella halifaxensis HAW-EB4 5904958 YP_001675674.1 CDS Shal_3470 NC_010334.1 4225636 4226259 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: vfi:VF0670 urease accessory protein UreG; urease accessory protein UreG 4225636..4226259 Shewanella halifaxensis HAW-EB4 5905083 YP_001675675.1 CDS Shal_3471 NC_010334.1 4226503 4227741 D PFAM: Endoribonuclease L-PSP; KEGG: ppr:PBPRB1772 hypothetical endoribonuclease L-PSP; endoribonuclease L-PSP 4226503..4227741 Shewanella halifaxensis HAW-EB4 5905084 YP_001675676.1 CDS Shal_3472 NC_010334.1 4227978 4228124 D hypothetical protein 4227978..4228124 Shewanella halifaxensis HAW-EB4 5905153 YP_001675677.1 CDS Shal_3473 NC_010334.1 4228311 4229051 R hypothetical protein complement(4228311..4229051) Shewanella halifaxensis HAW-EB4 5905154 YP_001675678.1 CDS Shal_3474 NC_010334.1 4229499 4230098 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(4229499..4230098) Shewanella halifaxensis HAW-EB4 5905494 YP_001675679.1 CDS Shal_3475 NC_010334.1 4230644 4233925 D PFAM: MscS Mechanosensitive ion channel; KEGG: vvu:VV1_0007 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 4230644..4233925 Shewanella halifaxensis HAW-EB4 5905495 YP_001675680.1 CDS Shal_3476 NC_010334.1 4234227 4234475 D KEGG: sdn:Sden_0577 hypothetical protein; hypothetical protein 4234227..4234475 Shewanella halifaxensis HAW-EB4 5906487 YP_001675681.1 CDS Shal_3477 NC_010334.1 4234832 4235827 D catalyzes the formation of inosine from adenosine; adenosine deaminase 4234832..4235827 Shewanella halifaxensis HAW-EB4 5906488 YP_001675682.1 CDS Shal_3478 NC_010334.1 4236396 4236737 D PFAM: TM2 domain containing protein?; KEGG: ppd:Ppro_2995 TM2 domain containing protein+B7201; TM2 domain-containing protein 4236396..4236737 Shewanella halifaxensis HAW-EB4 5906089 YP_001675683.1 CDS Shal_3479 NC_010334.1 4237644 4241054 D KEGG: vvy:VVA1337 TagA-related protein; TagA-like protein 4237644..4241054 Shewanella halifaxensis HAW-EB4 5906090 YP_001675684.1 CDS Shal_3480 NC_010334.1 4241155 4241829 R PFAM: RDD domain containing protein; KEGG: shm:Shewmr7_2450 RDD domain containing protein; RDD domain-containing protein complement(4241155..4241829) Shewanella halifaxensis HAW-EB4 5904621 YP_001675685.1 CDS Shal_3481 NC_010334.1 4242326 4243159 D KEGG: vha:VIBHAR_05537 hypothetical protein; hypothetical protein 4242326..4243159 Shewanella halifaxensis HAW-EB4 5904622 YP_001675686.1 CDS Shal_3482 NC_010334.1 4243341 4244222 R hypothetical protein complement(4243341..4244222) Shewanella halifaxensis HAW-EB4 5905864 YP_001675687.1 CDS Shal_3483 NC_010334.1 4244665 4246629 D PFAM: peptidase M4 thermolysin; Propeptide peptidase M4 and M36; Peptidase M4 thermolysin; KEGG: mxa:MXAN_5442 peptidase, M4 (thermolysin) family; peptidase M4 thermolysin 4244665..4246629 Shewanella halifaxensis HAW-EB4 5905865 YP_001675688.1 CDS Shal_3484 NC_010334.1 4247083 4247820 D PFAM: extracellular solute-binding protein family 3; KEGG: son:SO_1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 4247083..4247820 Shewanella halifaxensis HAW-EB4 5904277 YP_001675689.1 CDS Shal_3485 NC_010334.1 4247828 4248508 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_3165 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 4247828..4248508 Shewanella halifaxensis HAW-EB4 5904278 YP_001675690.1 CDS Shal_3486 NC_010334.1 4248501 4249226 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3164 ABC transporter-related protein; ABC transporter-like protein 4248501..4249226 Shewanella halifaxensis HAW-EB4 5906076 YP_001675691.1 CDS Shal_3487 NC_010334.1 4249460 4249939 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: slo:Shew_0707 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4249460..4249939 Shewanella halifaxensis HAW-EB4 5906077 YP_001675692.1 CDS Shal_3488 NC_010334.1 4250167 4250658 D KEGG: shw:Sputw3181_2912 hypothetical protein; hypothetical protein 4250167..4250658 Shewanella halifaxensis HAW-EB4 5904309 YP_001675693.1 CDS Shal_3489 NC_010334.1 4251093 4251668 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: son:SO_4295 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 4251093..4251668 Shewanella halifaxensis HAW-EB4 5904310 YP_001675694.1 CDS Shal_3490 NC_010334.1 4251713 4252960 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shw:Sputw3181_0452 Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter 4251713..4252960 Shewanella halifaxensis HAW-EB4 5906971 YP_001675695.1 CDS Shal_3491 NC_010334.1 4253287 4253946 D KEGG: ppr:PBPRB0398 hypothetical protein; putative periplasmic ligand-binding sensor protein 4253287..4253946 Shewanella halifaxensis HAW-EB4 5906972 YP_001675696.1 CDS Shal_3492 NC_010334.1 4254236 4256278 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4254236..4256278 Shewanella halifaxensis HAW-EB4 5905786 YP_001675697.1 CDS Shal_3493 NC_010334.1 4256415 4256657 R hypothetical protein complement(4256415..4256657) Shewanella halifaxensis HAW-EB4 5905787 YP_001675698.1 CDS Shal_3494 NC_010334.1 4256966 4261486 R KEGG: vvu:VV1_0767 hypothetical protein; hypothetical protein complement(4256966..4261486) Shewanella halifaxensis HAW-EB4 5904419 YP_001675699.1 CDS Shal_3495 NC_010334.1 4261792 4263627 R KEGG: cdf:CD3145 putative serine-aspartate-rich surface anchored fibrinogen-binding protein; hypothetical protein complement(4261792..4263627) Shewanella halifaxensis HAW-EB4 5904420 YP_001675700.1 CDS Shal_3496 NC_010334.1 4264058 4267645 D hypothetical protein 4264058..4267645 Shewanella halifaxensis HAW-EB4 5904259 YP_001675701.1 CDS Shal_3499 NC_010334.1 4269973 4270269 D KEGG: sbm:Shew185_3407 hypothetical protein; hypothetical protein 4269973..4270269 Shewanella halifaxensis HAW-EB4 5903367 YP_001675702.1 CDS Shal_3500 NC_010334.1 4270445 4271746 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2195 NADH dehydrogenase; NADH dehydrogenase complement(4270445..4271746) Shewanella halifaxensis HAW-EB4 5903368 YP_001675703.1 CDS Shal_3501 NC_010334.1 4272164 4272550 D KEGG: vha:VIBHAR_04801 hypothetical protein; hypothetical protein 4272164..4272550 Shewanella halifaxensis HAW-EB4 5904673 YP_001675704.1 CDS Shal_3502 NC_010334.1 4272623 4273150 R KEGG: sbm:Shew185_1422 lipoprotein, putative; putative lipoprotein complement(4272623..4273150) Shewanella halifaxensis HAW-EB4 5904674 YP_001675705.1 CDS Shal_3503 NC_010334.1 4273293 4274024 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_4378 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator complement(4273293..4274024) Shewanella halifaxensis HAW-EB4 5904594 YP_001675706.1 CDS Shal_3504 NC_010334.1 4274182 4275432 D PFAM: major facilitator superfamily MFS_1; KEGG: pin:Ping_1574 transporter major facilitator superfamily MFS_1; major facilitator transporter 4274182..4275432 Shewanella halifaxensis HAW-EB4 5904595 YP_001675707.1 CDS Shal_3505 NC_010334.1 4275499 4276560 R KEGG: ppr:PBPRB1341 hypothetical protein; hypothetical protein complement(4275499..4276560) Shewanella halifaxensis HAW-EB4 5904528 YP_001675708.1 CDS Shal_3506 NC_010334.1 4276606 4277673 R PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1340 putative secretion protein; secretion protein HlyD family protein complement(4276606..4277673) Shewanella halifaxensis HAW-EB4 5904529 YP_001675709.1 CDS Shal_3507 NC_010334.1 4277774 4278640 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1339 hypothetical transcriptional regulator; LysR family transcriptional regulator 4277774..4278640 Shewanella halifaxensis HAW-EB4 5904336 YP_001675710.1 CDS Shal_3508 NC_010334.1 4278831 4281665 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_2351 TonB-dependent receptor; TonB-dependent receptor complement(4278831..4281665) Shewanella halifaxensis HAW-EB4 5904337 YP_001675711.1 CDS Shal_3509 NC_010334.1 4282043 4283425 R PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0698 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(4282043..4283425) Shewanella halifaxensis HAW-EB4 5904302 YP_001675712.1 CDS Shal_3510 NC_010334.1 4283793 4284686 R KEGG: sbl:Sbal_3290 hypothetical protein; hypothetical protein complement(4283793..4284686) Shewanella halifaxensis HAW-EB4 5904303 YP_001675713.1 CDS Shal_3511 NC_010334.1 4284895 4285959 D PFAM: permease; KEGG: vha:VIBHAR_05267 hypothetical protein; permease 4284895..4285959 Shewanella halifaxensis HAW-EB4 5903436 YP_001675714.1 CDS Shal_3512 NC_010334.1 4286143 4286358 D PFAM: protein of unknown function DUF331; KEGG: slo:Shew_0695 protein of unknown function DUF331; hypothetical protein 4286143..4286358 Shewanella halifaxensis HAW-EB4 5903437 YP_001675715.1 CDS Shal_3513 NC_010334.1 4286386 4287162 R KEGG: vco:VC0395_0913 putative lipoprotein; cold-shock DNA-binding domain-containing protein complement(4286386..4287162) Shewanella halifaxensis HAW-EB4 5902604 YP_001675716.1 CDS Shal_3514 NC_010334.1 4287162 4288055 R PFAM: 3'-5' exonuclease; KEGG: shn:Shewana3_0980 3'-5' exonuclease; 3'-5' exonuclease complement(4287162..4288055) Shewanella halifaxensis HAW-EB4 5902605 YP_001675717.1 CDS Shal_3515 NC_010334.1 4288097 4288696 R hypothetical protein complement(4288097..4288696) Shewanella halifaxensis HAW-EB4 5903045 YP_001675718.1 CDS Shal_3516 NC_010334.1 4288943 4290235 D KEGG: shw:Sputw3181_2350 hypothetical protein; hypothetical protein 4288943..4290235 Shewanella halifaxensis HAW-EB4 5903046 YP_001675719.1 CDS Shal_3517 NC_010334.1 4290393 4290929 R KEGG: sfr:Sfri_3634 hypothetical protein; hypothetical protein complement(4290393..4290929) Shewanella halifaxensis HAW-EB4 5902897 YP_001675720.1 CDS Shal_3518 NC_010334.1 4290940 4291761 R KEGG: sfr:Sfri_3633 cytochrome c, putative; cytochrome c complement(4290940..4291761) Shewanella halifaxensis HAW-EB4 5902898 YP_001675721.1 CDS Shal_3519 NC_010334.1 4292217 4292969 D PFAM: transcriptional regulator domain protein; KEGG: sfr:Sfri_3632 response regulator receiver protein; transcriptional regulator CadC 4292217..4292969 Shewanella halifaxensis HAW-EB4 5902657 YP_001675722.1 CDS Shal_3520 NC_010334.1 4293030 4293548 D KEGG: sfr:Sfri_3631 hypothetical protein; hypothetical protein 4293030..4293548 Shewanella halifaxensis HAW-EB4 5902658 YP_001675723.1 CDS Shal_3521 NC_010334.1 4293600 4294430 R KEGG: slo:Shew_0689 hypothetical protein; hypothetical protein complement(4293600..4294430) Shewanella halifaxensis HAW-EB4 5904852 YP_001675724.1 CDS Shal_3522 NC_010334.1 4294915 4295574 D PFAM: DSBA oxidoreductase; KEGG: sbm:Shew185_0941 DsbA oxidoreductase; DSBA oxidoreductase 4294915..4295574 Shewanella halifaxensis HAW-EB4 5904853 YP_001675725.1 CDS Shal_3523 NC_010334.1 4295656 4296669 R PFAM: glycosyl transferase group 1; KEGG: ana:all2291 glycosyltransferase; group 1 glycosyl transferase complement(4295656..4296669) Shewanella halifaxensis HAW-EB4 5904721 YP_001675726.1 CDS Shal_3524 NC_010334.1 4297991 4298521 R KEGG: slo:Shew_0679 hypothetical protein; hypothetical protein complement(4297991..4298521) Shewanella halifaxensis HAW-EB4 5904722 YP_001675727.1 CDS Shal_3525 NC_010334.1 4298539 4299072 R KEGG: shn:Shewana3_0871 protoporphyrinogen oxidase; protoporphyrinogen oxidase complement(4298539..4299072) Shewanella halifaxensis HAW-EB4 5904970 YP_001675728.1 CDS Shal_3526 NC_010334.1 4299291 4300955 R PFAM: protein of unknown function DUF1111; KEGG: sdn:Sden_0723 protein of unknown function DUF1111; hypothetical protein complement(4299291..4300955) Shewanella halifaxensis HAW-EB4 5904971 YP_001675729.1 CDS Shal_3527 NC_010334.1 4301106 4302254 R KEGG: slo:Shew_0676 putative lipoprotein; putative lipoprotein complement(4301106..4302254) Shewanella halifaxensis HAW-EB4 5905142 YP_001675730.1 CDS Shal_3528 NC_010334.1 4302288 4303712 R KEGG: sdn:Sden_0721 hypothetical protein; hypothetical protein complement(4302288..4303712) Shewanella halifaxensis HAW-EB4 5905143 YP_001675731.1 CDS Shal_3529 NC_010334.1 4304505 4305365 D KEGG: slo:Shew_0673 hypothetical protein; hypothetical protein 4304505..4305365 Shewanella halifaxensis HAW-EB4 5905343 YP_001675732.1 CDS Shal_3530 NC_010334.1 4305362 4305979 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(4305362..4305979) Shewanella halifaxensis HAW-EB4 5905344 YP_001675733.1 CDS Shal_3531 NC_010334.1 4306085 4307809 R PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shn:Shewana3_0865 TrkA-C domain protein; TrkA domain-containing protein complement(4306085..4307809) Shewanella halifaxensis HAW-EB4 5905251 YP_001675734.1 CDS cysN NC_010334.1 4307812 4309251 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(4307812..4309251) Shewanella halifaxensis HAW-EB4 5905252 YP_001675735.1 CDS Shal_3533 NC_010334.1 4309300 4310208 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(4309300..4310208) Shewanella halifaxensis HAW-EB4 5905325 YP_001675736.1 CDS Shal_3534 NC_010334.1 4310235 4311056 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO_3728 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(4310235..4311056) Shewanella halifaxensis HAW-EB4 5905326 YP_001675737.1 CDS Shal_3535 NC_010334.1 4311470 4312435 D PFAM: phospholipase A1; KEGG: saz:Sama_2893 phospholipase A(1); phospholipase A(1) 4311470..4312435 Shewanella halifaxensis HAW-EB4 5905459 YP_001675738.1 CDS Shal_3536 NC_010334.1 4312517 4314034 D KEGG: sbm:Shew185_0925 hypothetical protein; hypothetical protein 4312517..4314034 Shewanella halifaxensis HAW-EB4 5905460 YP_001675739.1 CDS Shal_3537 NC_010334.1 4314131 4314991 D PFAM: protein of unknown function RIO1; KEGG: sbm:Shew185_0676 protein of unknown function RIO1; hypothetical protein 4314131..4314991 Shewanella halifaxensis HAW-EB4 5905530 YP_001675740.1 CDS Shal_3538 NC_010334.1 4315117 4315665 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0669 redoxin domain protein; alkyl hydroperoxide reductase complement(4315117..4315665) Shewanella halifaxensis HAW-EB4 5905531 YP_001675741.1 CDS Shal_3539 NC_010334.1 4315787 4316209 R KEGG: pfl:PFL_5750 hypothetical protein; hypothetical protein complement(4315787..4316209) Shewanella halifaxensis HAW-EB4 5905840 YP_001675742.1 CDS Shal_3540 NC_010334.1 4316314 4318038 R KEGG: sbl:Sbal_3412 hypothetical protein; hypothetical protein complement(4316314..4318038) Shewanella halifaxensis HAW-EB4 5905841 YP_001675743.1 CDS Shal_3541 NC_010334.1 4318765 4319535 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(4318765..4319535) Shewanella halifaxensis HAW-EB4 5905740 YP_001675744.1 CDS Shal_3542 NC_010334.1 4319528 4321225 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(4319528..4321225) Shewanella halifaxensis HAW-EB4 5905741 YP_001675745.1 CDS Shal_3543 NC_010334.1 4321309 4323117 R TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: slo:Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein subunit alpha complement(4321309..4323117) Shewanella halifaxensis HAW-EB4 5905770 YP_001675746.1 CDS Shal_3544 NC_010334.1 4323436 4324650 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: slo:Shew_0664 alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase 4323436..4324650 Shewanella halifaxensis HAW-EB4 5905771 YP_001675747.1 CDS Shal_3545 NC_010334.1 4324650 4324925 D KEGG: slo:Shew_0663 oxidoreductase; oxidoreductase 4324650..4324925 Shewanella halifaxensis HAW-EB4 5905827 YP_001675748.1 CDS Shal_3546 NC_010334.1 4324932 4326314 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: slo:Shew_0662 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 4324932..4326314 Shewanella halifaxensis HAW-EB4 5905828 YP_001675749.1 CDS Shal_3547 NC_010334.1 4326495 4327883 D PFAM: MltA-interacting MipA family protein; KEGG: vfi:VF1562 hypothetical protein; MltA-interacting MipA family protein 4326495..4327883 Shewanella halifaxensis HAW-EB4 5905842 YP_001675750.1 CDS Shal_3548 NC_010334.1 4328206 4328682 R PFAM: regulatory protein TetR; KEGG: saz:Sama_0733 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4328206..4328682) Shewanella halifaxensis HAW-EB4 5905843 YP_001675751.1 CDS Shal_3549 NC_010334.1 4328778 4329668 R KEGG: shn:Shewana3_0850 hypothetical protein; hypothetical protein complement(4328778..4329668) Shewanella halifaxensis HAW-EB4 5905941 YP_001675752.1 CDS Shal_3550 NC_010334.1 4329709 4331139 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(4329709..4331139) Shewanella halifaxensis HAW-EB4 5905942 YP_001675753.1 CDS Shal_3551 NC_010334.1 4331240 4332166 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: slo:Shew_0658 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4331240..4332166 Shewanella halifaxensis HAW-EB4 5905858 YP_001675754.1 CDS Shal_3552 NC_010334.1 4332565 4333092 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: nar:Saro_3961 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(4332565..4333092) Shewanella halifaxensis HAW-EB4 5905859 YP_001675755.1 CDS Shal_3553 NC_010334.1 4333215 4333694 R KEGG: pat:Patl_1751 hypothetical protein; hypothetical protein complement(4333215..4333694) Shewanella halifaxensis HAW-EB4 5906983 YP_001675756.1 CDS Shal_3554 NC_010334.1 4334414 4336708 D KEGG: slo:Shew_0657 putative nitric oxide reductase (subunit B) transmembrane protein; nitric-oxide reductase 4334414..4336708 Shewanella halifaxensis HAW-EB4 5906984 YP_001675757.1 CDS Shal_3555 NC_010334.1 4337061 4338641 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4337061..4338641 Shewanella halifaxensis HAW-EB4 5906710 YP_001675758.1 CDS Shal_3558 NC_010334.1 4340265 4341887 D PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_0841 peptidase M16 domain protein; peptidase M16 domain-containing protein 4340265..4341887 Shewanella halifaxensis HAW-EB4 5906696 YP_001675759.1 CDS Shal_3559 NC_010334.1 4342043 4343056 D PFAM: StbA family protein; KEGG: cko:CKO_02852 hypothetical protein; StbA family protein 4342043..4343056 Shewanella halifaxensis HAW-EB4 5906697 YP_001675760.1 CDS Shal_3560 NC_010334.1 4343067 4343783 D KEGG: cko:CKO_02851 hypothetical protein; hypothetical protein 4343067..4343783 Shewanella halifaxensis HAW-EB4 5906664 YP_001675761.1 CDS Shal_3561 NC_010334.1 4343979 4345301 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(4343979..4345301) Shewanella halifaxensis HAW-EB4 5906665 YP_001675762.1 CDS Shal_3562 NC_010334.1 4345324 4346661 R member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX complement(4345324..4346661) Shewanella halifaxensis HAW-EB4 5906424 YP_001675763.1 CDS Shal_3563 NC_010334.1 4346916 4347860 D regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 4346916..4347860 Shewanella halifaxensis HAW-EB4 5906425 YP_001675764.1 CDS Shal_3564 NC_010334.1 4347971 4348240 D KEGG: sfr:Sfri_2004 hypothetical protein; hypothetical protein 4347971..4348240 Shewanella halifaxensis HAW-EB4 5906351 YP_001675765.1 CDS Shal_3565 NC_010334.1 4348323 4349183 D KEGG: mmz:MmarC7_1679 tetratricopeptide TPR_2 repeat protein; hypothetical protein 4348323..4349183 Shewanella halifaxensis HAW-EB4 5906352 YP_001675766.1 CDS Shal_3566 NC_010334.1 4349307 4350017 R hypothetical protein complement(4349307..4350017) Shewanella halifaxensis HAW-EB4 5906327 YP_001675767.1 CDS Shal_3567 NC_010334.1 4350303 4350779 R KEGG: bbt:BBta_4307 putative membrane protein of unknown function; hypothetical protein complement(4350303..4350779) Shewanella halifaxensis HAW-EB4 5906328 YP_001675768.1 CDS Shal_3568 NC_010334.1 4350802 4351308 R KEGG: vha:VIBHAR_01968 hypothetical protein; hypothetical protein complement(4350802..4351308) Shewanella halifaxensis HAW-EB4 5906285 YP_001675769.1 CDS Shal_3569 NC_010334.1 4352049 4354058 D KEGG: eca:ECA0649 putative DNA mismatch repair protein; putative DNA mismatch repair protein 4352049..4354058 Shewanella halifaxensis HAW-EB4 5906286 YP_001675770.1 CDS Shal_3570 NC_010334.1 4354378 4354818 R KEGG: vvy:VV2395 hypothetical protein; hypothetical protein complement(4354378..4354818) Shewanella halifaxensis HAW-EB4 5906191 YP_001675771.1 CDS Shal_3571 NC_010334.1 4354991 4355674 R hypothetical protein complement(4354991..4355674) Shewanella halifaxensis HAW-EB4 5906192 YP_001675772.1 CDS Shal_3572 NC_010334.1 4355935 4358808 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(4355935..4358808) Shewanella halifaxensis HAW-EB4 5906059 YP_001675773.1 CDS Shal_3573 NC_010334.1 4359160 4360119 D KEGG: slo:Shew_0627 hypothetical protein; hypothetical protein 4359160..4360119 Shewanella halifaxensis HAW-EB4 5906060 YP_001675774.1 CDS Shal_3574 NC_010334.1 4360133 4361032 D PFAM: protein of unknown function DUF350; KEGG: slo:Shew_0626 protein of unknown function DUF350; hypothetical protein 4360133..4361032 Shewanella halifaxensis HAW-EB4 5905850 YP_001675775.1 CDS Shal_3575 NC_010334.1 4361163 4362890 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4361163..4362890 Shewanella halifaxensis HAW-EB4 5905851 YP_001675776.1 CDS Shal_3576 NC_010334.1 4362982 4363395 D KEGG: slo:Shew_0624 hypothetical protein; hypothetical protein 4362982..4363395 Shewanella halifaxensis HAW-EB4 5905997 YP_001675777.1 CDS Shal_3577 NC_010334.1 4363408 4364097 D PFAM: PspA/IM30 family protein; KEGG: sfr:Sfri_3266 phage shock protein A, PspA; phage shock protein A 4363408..4364097 Shewanella halifaxensis HAW-EB4 5905998 YP_001675778.1 CDS Shal_3578 NC_010334.1 4364109 4364759 D KEGG: shw:Sputw3181_0852 hypothetical protein; hypothetical protein 4364109..4364759 Shewanella halifaxensis HAW-EB4 5907020 YP_001675779.1 CDS Shal_3579 NC_010334.1 4364878 4365207 D KEGG: slo:Shew_0621 hypothetical protein; hypothetical protein 4364878..4365207 Shewanella halifaxensis HAW-EB4 5907021 YP_001675780.1 CDS Shal_3580 NC_010334.1 4365266 4366078 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: sbm:Shew185_0885 ion transport 2 domain protein; Ion transport 2 domain-containing protein 4365266..4366078 Shewanella halifaxensis HAW-EB4 5906997 YP_001675781.1 CDS Shal_3581 NC_010334.1 4366188 4367675 R PFAM: adenylate cyclase; KEGG: slo:Shew_0619 adenylate cyclase; adenylate cyclase complement(4366188..4367675) Shewanella halifaxensis HAW-EB4 5906998 YP_001675782.1 CDS Shal_3582 NC_010334.1 4367908 4368588 D PFAM: protein of unknown function DUF47; KEGG: slo:Shew_0618 protein of unknown function DUF47; hypothetical protein 4367908..4368588 Shewanella halifaxensis HAW-EB4 5906993 YP_001675783.1 CDS Shal_3583 NC_010334.1 4368613 4369881 D PFAM: phosphate transporter; KEGG: slo:Shew_0617 phosphate transporter; phosphate transporter 4368613..4369881 Shewanella halifaxensis HAW-EB4 5906994 YP_001675784.1 CDS Shal_3584 NC_010334.1 4370044 4370619 D KEGG: slo:Shew_0616 SH3 domain protein domain protein; SH3 domain-containing protein 4370044..4370619 Shewanella halifaxensis HAW-EB4 5906881 YP_001675785.1 CDS Shal_3585 NC_010334.1 4371158 4374352 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 4371158..4374352 Shewanella halifaxensis HAW-EB4 5906882 YP_001675786.1 CDS Shal_3586 NC_010334.1 4374706 4376586 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA3375 putative methyl-accepting chemotaxis protein; Cache sensor containing methyl-accepting chemotaxis sensory transducer 4374706..4376586 Shewanella halifaxensis HAW-EB4 5906875 YP_001675787.1 CDS Shal_3587 NC_010334.1 4376674 4378566 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA3375 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4376674..4378566 Shewanella halifaxensis HAW-EB4 5906876 YP_001675788.1 CDS Shal_3588 NC_010334.1 4378660 4380399 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(4378660..4380399) Shewanella halifaxensis HAW-EB4 5906852 YP_001675789.1 CDS Shal_3589 NC_010334.1 4380396 4382192 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(4380396..4382192) Shewanella halifaxensis HAW-EB4 5906853 YP_001675790.1 CDS Shal_3590 NC_010334.1 4382561 4382908 R KEGG: slo:Shew_0605 hypothetical protein; hypothetical protein complement(4382561..4382908) Shewanella halifaxensis HAW-EB4 5906841 YP_001675791.1 CDS Shal_3591 NC_010334.1 4383598 4385076 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_0836 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 4383598..4385076 Shewanella halifaxensis HAW-EB4 5906842 YP_001675792.1 CDS Shal_3592 NC_010334.1 4385282 4386691 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(4385282..4386691) Shewanella halifaxensis HAW-EB4 5906699 YP_001675793.1 CDS Shal_3593 NC_010334.1 4387078 4387773 R KEGG: dvl:Dvul_0140 lipoprotein, putative; hypothetical protein complement(4387078..4387773) Shewanella halifaxensis HAW-EB4 5906700 YP_001675794.1 CDS Shal_3594 NC_010334.1 4387937 4388155 R PFAM: conserved hypothetical protein; KEGG: sbm:Shew185_0864 hypothetical protein; hypothetical protein complement(4387937..4388155) Shewanella halifaxensis HAW-EB4 5906682 YP_001675795.1 CDS Shal_3595 NC_010334.1 4388246 4390219 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbl:Sbal_3476 ABC transporter related; ABC transporter-like protein 4388246..4390219 Shewanella halifaxensis HAW-EB4 5906683 YP_001675796.1 CDS Shal_3596 NC_010334.1 4390259 4390783 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_0592 hypothetical protein; hypothetical protein 4390259..4390783 Shewanella halifaxensis HAW-EB4 5906640 YP_001675797.1 CDS Shal_3597 NC_010334.1 4391010 4392605 R PFAM: glucose-methanol-choline oxidoreductase; KEGG: sbm:Shew185_0857 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(4391010..4392605) Shewanella halifaxensis HAW-EB4 5906641 YP_001675798.1 CDS Shal_3598 NC_010334.1 4392654 4393172 R KEGG: slo:Shew_0590 hypothetical protein; hypothetical protein complement(4392654..4393172) Shewanella halifaxensis HAW-EB4 5906627 YP_001675799.1 CDS Shal_3599 NC_010334.1 4393340 4394320 D KEGG: sbm:Shew185_0855 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4393340..4394320 Shewanella halifaxensis HAW-EB4 5906628 YP_001675800.1 CDS Shal_3600 NC_010334.1 4394314 4394568 D PFAM: protein of unknown function UPF0270; KEGG: saz:Sama_3001 protein of unknown function UPF0270; hypothetical protein 4394314..4394568 Shewanella halifaxensis HAW-EB4 5906611 YP_001675801.1 CDS Shal_3601 NC_010334.1 4394721 4395608 D PFAM: phosphoribulokinase/uridine kinase; KEGG: slo:Shew_0587 phosphoribulokinase; phosphoribulokinase 4394721..4395608 Shewanella halifaxensis HAW-EB4 5906612 YP_001675802.1 CDS Shal_3602 NC_010334.1 4396273 4397055 R KEGG: sbl:Sbal_0579 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4396273..4397055) Shewanella halifaxensis HAW-EB4 5906499 YP_001675803.1 CDS Shal_3603 NC_010334.1 4397510 4398145 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4397510..4398145 Shewanella halifaxensis HAW-EB4 5906500 YP_001675804.1 CDS Shal_3604 NC_010334.1 4398229 4398564 D KEGG: shn:Shewana3_0616 hypothetical protein; hypothetical protein 4398229..4398564 Shewanella halifaxensis HAW-EB4 5906393 YP_001675805.1 CDS Shal_3605 NC_010334.1 4398674 4399348 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0583 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4398674..4399348 Shewanella halifaxensis HAW-EB4 5906394 YP_001675806.1 CDS Shal_3606 NC_010334.1 4399345 4400670 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0582 integral membrane sensor signal transduction histidine kinase; histidine kinase 4399345..4400670 Shewanella halifaxensis HAW-EB4 5906283 YP_001675807.1 CDS Shal_3607 NC_010334.1 4400831 4401631 R KEGG: slo:Shew_0581 hypothetical protein; hypothetical protein complement(4400831..4401631) Shewanella halifaxensis HAW-EB4 5906284 YP_001675808.1 CDS astD NC_010334.1 4401774 4403234 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(4401774..4403234) Shewanella halifaxensis HAW-EB4 5906268 YP_001675809.1 CDS Shal_3609 NC_010334.1 4403244 4404263 R PFAM: arginine N-succinyltransferase beta subunit; KEGG: slo:Shew_0579 arginine N-succinyltransferase; arginine N-succinyltransferase complement(4403244..4404263) Shewanella halifaxensis HAW-EB4 5906269 YP_001675810.1 CDS argD NC_010334.1 4404397 4405614 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4404397..4405614) Shewanella halifaxensis HAW-EB4 5906105 YP_001675811.1 CDS Shal_3611 NC_010334.1 4406274 4407416 R PFAM: Metal-dependent hydrolase HDOD; KEGG: shn:Shewana3_0608 putative signal transduction protein; putative signal transduction protein complement(4406274..4407416) Shewanella halifaxensis HAW-EB4 5906106 YP_001675812.1 CDS Shal_3612 NC_010334.1 4407601 4410105 R PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: slo:Shew_0576 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(4407601..4410105) Shewanella halifaxensis HAW-EB4 5906094 YP_001675813.1 CDS Shal_3613 NC_010334.1 4410457 4411029 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: she:Shewmr4_0607 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase complement(4410457..4411029) Shewanella halifaxensis HAW-EB4 5906095 YP_001675814.1 CDS Shal_3614 NC_010334.1 4411102 4412388 R KEGG: dps:DP2970 hypothetical protein; hypothetical protein complement(4411102..4412388) Shewanella halifaxensis HAW-EB4 5906046 YP_001675815.1 CDS Shal_3615 NC_010334.1 4412391 4413032 R TIGRFAM: TonB family protein; KEGG: dps:DP2971 similar to TonB protein; TonB family protein complement(4412391..4413032) Shewanella halifaxensis HAW-EB4 5906047 YP_001675816.1 CDS Shal_3616 NC_010334.1 4413032 4413433 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dps:DP2972 biopolymer transport protein (ExbD2); biopolymer transport protein ExbD/TolR complement(4413032..4413433) Shewanella halifaxensis HAW-EB4 5906038 YP_001675817.1 CDS Shal_3617 NC_010334.1 4413426 4413944 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2973 similar to biopolymer transport protein (ExbB); MotA/TolQ/ExbB proton channel complement(4413426..4413944) Shewanella halifaxensis HAW-EB4 5906039 YP_001675818.1 CDS Shal_3618 NC_010334.1 4413931 4415388 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2974 similar to transport protein TolQ; MotA/TolQ/ExbB proton channel complement(4413931..4415388) Shewanella halifaxensis HAW-EB4 5905982 YP_001675819.1 CDS Shal_3619 NC_010334.1 4415388 4416176 R KEGG: dps:DP2975 hypothetical protein; hypothetical protein complement(4415388..4416176) Shewanella halifaxensis HAW-EB4 5905983 YP_001675820.1 CDS Shal_3620 NC_010334.1 4416173 4416997 R KEGG: dps:DP2976 hypothetical protein; hypothetical protein complement(4416173..4416997) Shewanella halifaxensis HAW-EB4 5905393 YP_001675821.1 CDS Shal_3621 NC_010334.1 4416994 4417686 R KEGG: dps:DP2977 hypothetical protein; hypothetical protein complement(4416994..4417686) Shewanella halifaxensis HAW-EB4 5905394 YP_001675822.1 CDS Shal_3622 NC_010334.1 4417716 4419026 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP2978 related to iron (III) ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4417716..4419026) Shewanella halifaxensis HAW-EB4 5905302 YP_001675823.1 CDS Shal_3623 NC_010334.1 4419026 4420072 R PFAM: transport system permease protein; KEGG: dps:DP2979 probable iron (III) ABC transporter, permease protein; transport system permease complement(4419026..4420072) Shewanella halifaxensis HAW-EB4 5905303 YP_001675824.1 CDS Shal_3624 NC_010334.1 4420063 4421061 R PFAM: periplasmic binding protein; KEGG: dps:DP2980 probable iron (III) ABC transporter, periplasmic-binding protein; periplasmic-binding protein complement(4420063..4421061) Shewanella halifaxensis HAW-EB4 5905206 YP_001675825.1 CDS Shal_3625 NC_010334.1 4421071 4423107 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dps:DP2981 related to TonB dependent outer membrane receptor; TonB-dependent receptor plug complement(4421071..4423107) Shewanella halifaxensis HAW-EB4 5905207 YP_001675826.1 CDS Shal_3626 NC_010334.1 4423599 4424069 R PFAM: Stringent starvation protein B; KEGG: slo:Shew_0574 stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(4423599..4424069) Shewanella halifaxensis HAW-EB4 5905119 YP_001675827.1 CDS sspA NC_010334.1 4424069 4424698 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(4424069..4424698) Shewanella halifaxensis HAW-EB4 5905120 YP_001675828.1 CDS Shal_3628 NC_010334.1 4424808 4425503 R PFAM: cytochrome c1; KEGG: sdn:Sden_3199 cytochrome c1; cytochrome c1 complement(4424808..4425503) Shewanella halifaxensis HAW-EB4 5905076 YP_001675829.1 CDS Shal_3629 NC_010334.1 4425503 4426717 R PFAM: Cytochrome b/b6 domain; KEGG: slo:Shew_0571 cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein complement(4425503..4426717) Shewanella halifaxensis HAW-EB4 5905077 YP_001675830.1 CDS Shal_3630 NC_010334.1 4426717 4427307 R KEGG: slo:Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(4426717..4427307) Shewanella halifaxensis HAW-EB4 5905020 YP_001675831.1 CDS Shal_3631 NC_010334.1 4427720 4428598 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shn:Shewana3_0600 HflC protein; HflC protein complement(4427720..4428598) Shewanella halifaxensis HAW-EB4 5905021 YP_001675832.1 CDS Shal_3632 NC_010334.1 4428602 4429747 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: sbm:Shew185_3765 HflK protein; HflK protein complement(4428602..4429747) Shewanella halifaxensis HAW-EB4 5905002 YP_001675833.1 CDS Shal_3633 NC_010334.1 4429797 4431092 R TIGRFAM: GTP1/OBG protein; PFAM: GTP-binding protein HSR1-related; KEGG: slo:Shew_0567 GTP-binding protein, HSR1-related; GTP1/OBG protein complement(4429797..4431092) Shewanella halifaxensis HAW-EB4 5905003 YP_001675834.1 CDS Shal_3634 NC_010334.1 4431113 4431391 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: slo:Shew_0566 RNA chaperone Hfq; RNA chaperone Hfq complement(4431113..4431391) Shewanella halifaxensis HAW-EB4 5904873 YP_001675835.1 CDS miaA NC_010334.1 4431485 4432411 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4431485..4432411) Shewanella halifaxensis HAW-EB4 5904874 YP_001675836.1 CDS mutL NC_010334.1 4432401 4434314 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(4432401..4434314) Shewanella halifaxensis HAW-EB4 5904709 YP_001675837.1 CDS Shal_3637 NC_010334.1 4434332 4435654 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: slo:Shew_0563 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(4434332..4435654) Shewanella halifaxensis HAW-EB4 5904710 YP_001675838.1 CDS Shal_3638 NC_010334.1 4435638 4436120 R PFAM: protein of unknown function UPF0079; KEGG: shn:Shewana3_0593 protein of unknown function UPF0079; hypothetical protein complement(4435638..4436120) Shewanella halifaxensis HAW-EB4 5904713 YP_001675839.1 CDS Shal_3639 NC_010334.1 4436196 4437674 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: spc:Sputcn32_3285 carbohydrate kinase, YjeF related protein; carbohydrate kinase complement(4436196..4437674) Shewanella halifaxensis HAW-EB4 5904714 YP_001675840.1 CDS Shal_3640 NC_010334.1 4437881 4438336 R KEGG: saz:Sama_3031 hypothetical protein; hypothetical protein complement(4437881..4438336) Shewanella halifaxensis HAW-EB4 5904664 YP_001675841.1 CDS Shal_3641 NC_010334.1 4439674 4440219 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(4439674..4440219) Shewanella halifaxensis HAW-EB4 5904247 YP_001675842.1 CDS Shal_3642 NC_010334.1 4440332 4441396 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4440332..4441396 Shewanella halifaxensis HAW-EB4 5906869 YP_001675843.1 CDS psd NC_010334.1 4441547 4442410 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4441547..4442410 Shewanella halifaxensis HAW-EB4 5906870 YP_001675844.1 CDS Shal_3644 NC_010334.1 4442425 4443303 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_0548 protein of unknown function DUF6, transmembrane; hypothetical protein 4442425..4443303 Shewanella halifaxensis HAW-EB4 5903431 YP_001675845.1 CDS Shal_3645 NC_010334.1 4443373 4446561 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_0555 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4443373..4446561 Shewanella halifaxensis HAW-EB4 5903432 YP_001675846.1 CDS Shal_3646 NC_010334.1 4446586 4447281 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: she:Shewmr4_0586 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4446586..4447281 Shewanella halifaxensis HAW-EB4 5904226 YP_001675847.1 CDS Shal_3647 NC_010334.1 4447367 4447630 R KEGG: shw:Sputw3181_0648 hypothetical protein; hypothetical protein complement(4447367..4447630) Shewanella halifaxensis HAW-EB4 5904227 YP_001675848.1 CDS Shal_3648 NC_010334.1 4447760 4448686 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: slo:Shew_0553 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4447760..4448686 Shewanella halifaxensis HAW-EB4 5903304 YP_001675849.1 CDS Shal_3649 NC_010334.1 4448865 4449056 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: shn:Shewana3_0581 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 4448865..4449056 Shewanella halifaxensis HAW-EB4 5903305 YP_001675850.1 CDS Shal_3650 NC_010334.1 4449127 4451394 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(4449127..4451394) Shewanella halifaxensis HAW-EB4 5904261 YP_001675851.1 CDS Shal_3651 NC_010334.1 4451394 4452536 R KEGG: slo:Shew_0550 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase complement(4451394..4452536) Shewanella halifaxensis HAW-EB4 5904262 YP_001675852.1 CDS Shal_3652 NC_010334.1 4452582 4454477 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(4452582..4454477) Shewanella halifaxensis HAW-EB4 5904286 YP_001675853.1 CDS Shal_3653 NC_010334.1 4454524 4455096 R PFAM: protein of unknown function UPF0227; KEGG: slo:Shew_0548 protein of unknown function UPF0227; hypothetical protein complement(4454524..4455096) Shewanella halifaxensis HAW-EB4 5904287 YP_001675854.1 CDS Shal_3654 NC_010334.1 4455124 4455963 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: shm:Shewmr7_0756 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase domain-containing protein complement(4455124..4455963) Shewanella halifaxensis HAW-EB4 5905532 YP_001675855.1 CDS Shal_3655 NC_010334.1 4455985 4456419 R PFAM: protein of unknown function DUF1249; KEGG: shw:Sputw3181_3405 protein of unknown function DUF1249; hypothetical protein complement(4455985..4456419) Shewanella halifaxensis HAW-EB4 5905533 YP_001675856.1 CDS Shal_3656 NC_010334.1 4456472 4457083 R PFAM: NUDIX hydrolase; KEGG: slo:Shew_0545 ADP-ribose diphosphatase; NUDIX hydrolase complement(4456472..4457083) Shewanella halifaxensis HAW-EB4 5906953 YP_001675857.1 CDS tolC NC_010334.1 4457374 4458681 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 4457374..4458681 Shewanella halifaxensis HAW-EB4 5906954 YP_001675858.1 CDS Shal_3658 NC_010334.1 4458750 4459487 R KEGG: sbm:Shew185_0780 hypothetical protein; hypothetical protein complement(4458750..4459487) Shewanella halifaxensis HAW-EB4 5906572 YP_001675859.1 CDS Shal_3659 NC_010334.1 4459490 4460461 R KEGG: slo:Shew_0542 hypothetical protein; hypothetical protein complement(4459490..4460461) Shewanella halifaxensis HAW-EB4 5906573 YP_001675860.1 CDS Shal_3660 NC_010334.1 4460474 4460953 R PFAM: protein of unknown function DUF461; KEGG: spc:Sputcn32_0765 protein of unknown function DUF461; hypothetical protein complement(4460474..4460953) Shewanella halifaxensis HAW-EB4 5905938 YP_001675861.1 CDS Shal_3661 NC_010334.1 4460987 4461724 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shn:Shewana3_0721 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4460987..4461724 Shewanella halifaxensis HAW-EB4 5905939 YP_001675862.1 CDS Shal_3662 NC_010334.1 4461903 4462103 R PFAM: PspC domain protein; KEGG: slo:Shew_0538 phage shock protein C, PspC; phage shock protein C complement(4461903..4462103) Shewanella halifaxensis HAW-EB4 5906796 YP_001675863.1 CDS Shal_3663 NC_010334.1 4462232 4462540 R KEGG: shn:Shewana3_0719 hypothetical protein; hypothetical protein complement(4462232..4462540) Shewanella halifaxensis HAW-EB4 5906797 YP_001675864.1 CDS Shal_3664 NC_010334.1 4462801 4463787 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: slo:Shew_0536 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A complement(4462801..4463787) Shewanella halifaxensis HAW-EB4 5905995 YP_001675865.1 CDS Shal_3665 NC_010334.1 4464022 4464972 R PFAM: regulatory protein LysR; KEGG: son:SO_4571 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4464022..4464972) Shewanella halifaxensis HAW-EB4 5905996 YP_001675866.1 CDS Shal_3666 NC_010334.1 4464956 4465933 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3153 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4464956..4465933) Shewanella halifaxensis HAW-EB4 5904252 YP_001675867.1 CDS Shal_3667 NC_010334.1 4466343 4468493 D KEGG: son:SO_1779 decaheme cytochrome c; decaheme cytochrome c 4466343..4468493 Shewanella halifaxensis HAW-EB4 5904253 YP_001675868.1 CDS Shal_3668 NC_010334.1 4468723 4470018 R KEGG: slo:Shew_3276 hypothetical protein; hypothetical protein complement(4468723..4470018) Shewanella halifaxensis HAW-EB4 5903588 YP_001675869.1 CDS alr NC_010334.1 4470117 4471193 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(4470117..4471193) Shewanella halifaxensis HAW-EB4 5903589 YP_001675870.1 CDS Shal_3670 NC_010334.1 4471286 4472692 R KEGG: slo:Shew_3278 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(4471286..4472692) Shewanella halifaxensis HAW-EB4 5904219 YP_001675871.1 CDS Shal_3671 NC_010334.1 4472816 4475041 D KEGG: slo:Shew_3279 hypothetical protein; hypothetical protein 4472816..4475041 Shewanella halifaxensis HAW-EB4 5904220 YP_001675872.1 CDS rplI NC_010334.1 4475475 4475927 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(4475475..4475927) Shewanella halifaxensis HAW-EB4 5904176 YP_001675873.1 CDS rpsR NC_010334.1 4475955 4476182 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4475955..4476182) Shewanella halifaxensis HAW-EB4 5904177 YP_001675874.1 CDS Shal_3674 NC_010334.1 4476194 4476499 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(4476194..4476499) Shewanella halifaxensis HAW-EB4 5903954 YP_001675875.1 CDS rpsF NC_010334.1 4476508 4476921 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(4476508..4476921) Shewanella halifaxensis HAW-EB4 5903955 YP_001675876.1 CDS Shal_3676 NC_010334.1 4477202 4477996 D PFAM: protein of unknown function DUF481; KEGG: shw:Sputw3181_3423 protein of unknown function DUF481; hypothetical protein 4477202..4477996 Shewanella halifaxensis HAW-EB4 5905580 YP_001675877.1 CDS Shal_3677 NC_010334.1 4478216 4478956 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(4478216..4478956) Shewanella halifaxensis HAW-EB4 5905581 YP_001675878.1 CDS Shal_3678 NC_010334.1 4478957 4481440 R KEGG: slo:Shew_3289 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(4478957..4481440) Shewanella halifaxensis HAW-EB4 5906741 YP_001675879.1 CDS Shal_3679 NC_010334.1 4481482 4482105 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3290 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4481482..4482105) Shewanella halifaxensis HAW-EB4 5906742 YP_001675880.1 CDS Shal_3680 NC_010334.1 4482281 4483576 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4482281..4483576) Shewanella halifaxensis HAW-EB4 5903891 YP_001675881.1 CDS Shal_3681 NC_010334.1 4483643 4483885 R KEGG: slo:Shew_3292 hypothetical protein; hypothetical protein complement(4483643..4483885) Shewanella halifaxensis HAW-EB4 5903892 YP_001675882.1 CDS rpsI NC_010334.1 4484217 4484609 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4484217..4484609) Shewanella halifaxensis HAW-EB4 5903807 YP_001675883.1 CDS rplM NC_010334.1 4484624 4485055 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4484624..4485055) Shewanella halifaxensis HAW-EB4 5903808 YP_001675884.1 CDS Shal_3684 NC_010334.1 4485251 4486360 R PFAM: AFG1-family ATPase; KEGG: slo:Shew_3295 AFG1-family ATPase; AFG1 family ATPase complement(4485251..4486360) Shewanella halifaxensis HAW-EB4 5904689 YP_001675885.1 CDS Shal_3685 NC_010334.1 4486669 4487025 D PFAM: protein of unknown function DUF1043; hypothetical protein 4486669..4487025 Shewanella halifaxensis HAW-EB4 5904690 YP_001675886.1 CDS Shal_3686 NC_010334.1 4487195 4488550 D KEGG: slo:Shew_3296 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 4487195..4488550 Shewanella halifaxensis HAW-EB4 5904631 YP_001675887.1 CDS Shal_3687 NC_010334.1 4488708 4489790 D TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO_3943 protease DegS; periplasmic serine protease DegS 4488708..4489790 Shewanella halifaxensis HAW-EB4 5904632 YP_001675888.1 CDS Shal_3689 NC_010334.1 4490483 4492162 R KEGG: ppd:Ppro_3498 hypothetical protein; hypothetical protein complement(4490483..4492162) Shewanella halifaxensis HAW-EB4 5904462 YP_001675889.1 CDS Shal_3690 NC_010334.1 4492353 4492991 R PFAM: response regulator receiver; KEGG: vha:VIBHAR_05158 hypothetical protein; response regulator receiver protein complement(4492353..4492991) Shewanella halifaxensis HAW-EB4 5905732 YP_001675890.1 CDS Shal_3691 NC_010334.1 4492991 4494385 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vha:VIBHAR_05159 hypothetical protein; histidine kinase complement(4492991..4494385) Shewanella halifaxensis HAW-EB4 5905733 YP_001675891.1 CDS Shal_3692 NC_010334.1 4494527 4495789 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4494527..4495789) Shewanella halifaxensis HAW-EB4 5905905 YP_001675892.1 CDS Shal_3693 NC_010334.1 4495811 4496062 R PFAM: BolA family protein; KEGG: slo:Shew_3299 BolA family protein; BolA family protein complement(4495811..4496062) Shewanella halifaxensis HAW-EB4 5905906 YP_001675893.1 CDS Shal_3694 NC_010334.1 4496076 4496369 R KEGG: shm:Shewmr7_3339 SpoIIAA family protein; SpoIIAA family protein complement(4496076..4496369) Shewanella halifaxensis HAW-EB4 5906340 YP_001675894.1 CDS Shal_3695 NC_010334.1 4496369 4497040 R PFAM: toluene tolerance family protein; KEGG: sbl:Sbal_3659 toluene tolerance family protein; toluene tolerance family protein complement(4496369..4497040) Shewanella halifaxensis HAW-EB4 5906341 YP_001675895.1 CDS Shal_3696 NC_010334.1 4497073 4497543 R PFAM: Mammalian cell entry related domain protein; KEGG: shw:Sputw3181_3450 mammalian cell entry related domain protein; hypothetical protein complement(4497073..4497543) Shewanella halifaxensis HAW-EB4 5906158 YP_001675896.1 CDS Shal_3697 NC_010334.1 4497617 4498402 R PFAM: protein of unknown function DUF140; KEGG: slo:Shew_3303 protein of unknown function DUF140; hypothetical protein complement(4497617..4498402) Shewanella halifaxensis HAW-EB4 5906159 YP_001675897.1 CDS Shal_3698 NC_010334.1 4498389 4499201 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3304 ABC transporter-related protein; ABC transporter-like protein complement(4498389..4499201) Shewanella halifaxensis HAW-EB4 5905226 YP_001675898.1 CDS Shal_3699 NC_010334.1 4499377 4500336 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: slo:Shew_3305 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4499377..4500336 Shewanella halifaxensis HAW-EB4 5905227 YP_001675899.1 CDS Shal_3700 NC_010334.1 4500383 4501360 D KEGG: slo:Shew_3306 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4500383..4501360 Shewanella halifaxensis HAW-EB4 5904396 YP_001675900.1 CDS Shal_3701 NC_010334.1 4501362 4501913 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4501362..4501913 Shewanella halifaxensis HAW-EB4 5904397 YP_001675901.1 CDS Shal_3702 NC_010334.1 4501910 4502467 D PFAM: protein of unknown function DUF1239; KEGG: sbm:Shew185_0689 protein of unknown function DUF1239; hypothetical protein 4501910..4502467 Shewanella halifaxensis HAW-EB4 5903188 YP_001675902.1 CDS Shal_3703 NC_010334.1 4502539 4503096 D TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; KEGG: slo:Shew_3309 OstA family protein; cell envelope biogenesis YhbN 4502539..4503096 Shewanella halifaxensis HAW-EB4 5903189 YP_001675903.1 CDS Shal_3704 NC_010334.1 4503093 4503824 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3310 ABC transporter-related protein; ABC transporter-like protein 4503093..4503824 Shewanella halifaxensis HAW-EB4 5906739 YP_001675904.1 CDS Shal_3705 NC_010334.1 4503961 4505424 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4503961..4505424 Shewanella halifaxensis HAW-EB4 5906740 YP_001675905.1 CDS Shal_3706 NC_010334.1 4505454 4505741 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: slo:Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 4505454..4505741 Shewanella halifaxensis HAW-EB4 5904994 YP_001675906.1 CDS Shal_3707 NC_010334.1 4505744 4506187 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: slo:Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4505744..4506187 Shewanella halifaxensis HAW-EB4 5904995 YP_001675907.1 CDS Shal_3708 NC_010334.1 4506396 4507250 D PFAM: conserved hypothetical protein; KEGG: she:Shewmr4_0670 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein 4506396..4507250 Shewanella halifaxensis HAW-EB4 5905097 YP_001675908.1 CDS Shal_3709 NC_010334.1 4507237 4507512 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shw:Sputw3181_3462 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 4507237..4507512 Shewanella halifaxensis HAW-EB4 5905098 YP_001675909.1 CDS Shal_3710 NC_010334.1 4507604 4508968 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: slo:Shew_3316 magnesium transporter; magnesium transporter 4507604..4508968 Shewanella halifaxensis HAW-EB4 5906003 YP_001675910.1 CDS Shal_3711 NC_010334.1 4509025 4509828 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: slo:Shew_2687 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter periplasmic molybdate-binding protein complement(4509025..4509828) Shewanella halifaxensis HAW-EB4 5906004 YP_001675911.1 CDS Shal_3712 NC_010334.1 4510145 4510819 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: slo:Shew_0908 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(4510145..4510819) Shewanella halifaxensis HAW-EB4 5905809 YP_001675912.1 CDS Shal_3713 NC_010334.1 4511270 4511491 D KEGG: spc:Sputcn32_0707 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4511270..4511491 Shewanella halifaxensis HAW-EB4 5905810 YP_001675913.1 CDS Shal_3714 NC_010334.1 4511640 4513007 R KEGG: slo:Shew_1854 hypothetical protein; hypothetical protein complement(4511640..4513007) Shewanella halifaxensis HAW-EB4 5905465 YP_001675914.1 CDS Shal_3715 NC_010334.1 4513214 4514752 R KEGG: cps:CPS_0069 putative FG-GAP repeat lipoprotein; FG-GAP repeat-containing protein complement(4513214..4514752) Shewanella halifaxensis HAW-EB4 5905466 YP_001675915.1 CDS Shal_3716 NC_010334.1 4514946 4515521 R PFAM: Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: slo:Shew_3323 lipase-like; PGAP1 family protein complement(4514946..4515521) Shewanella halifaxensis HAW-EB4 5903592 YP_001675916.1 CDS Shal_3717 NC_010334.1 4515678 4516769 D KEGG: sdn:Sden_3286 hypothetical protein; hypothetical protein 4515678..4516769 Shewanella halifaxensis HAW-EB4 5903593 YP_001675917.1 CDS Shal_3718 NC_010334.1 4517162 4518331 D PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1259 transport protein of the major facilitator; major facilitator transporter 4517162..4518331 Shewanella halifaxensis HAW-EB4 5906889 YP_001675918.1 CDS rumB NC_010334.1 4518646 4519722 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 4518646..4519722 Shewanella halifaxensis HAW-EB4 5906890 YP_001675919.1 CDS Shal_3720 NC_010334.1 4520005 4520214 D PFAM: TOBE domain protein; KEGG: slo:Shew_3338 TOBE domain protein; TOBE domain-containing protein 4520005..4520214 Shewanella halifaxensis HAW-EB4 5906905 YP_001675920.1 CDS Shal_3721 NC_010334.1 4520293 4520616 R KEGG: sde:Sde_3292 hypothetical protein; hypothetical protein complement(4520293..4520616) Shewanella halifaxensis HAW-EB4 5906906 YP_001675921.1 CDS Shal_3722 NC_010334.1 4520726 4521229 R KEGG: spc:Sputcn32_0688 hypothetical protein; hypothetical protein complement(4520726..4521229) Shewanella halifaxensis HAW-EB4 5906845 YP_001675922.1 CDS Shal_3723 NC_010334.1 4521232 4521522 R PFAM: protein of unknown function DUF134; KEGG: shw:Sputw3181_3483 protein of unknown function DUF134; hypothetical protein complement(4521232..4521522) Shewanella halifaxensis HAW-EB4 5906846 YP_001675923.1 CDS Shal_3724 NC_010334.1 4521789 4522379 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0677 putative dipeptide ABC transporter; ABC transporter-like protein complement(4521789..4522379) Shewanella halifaxensis HAW-EB4 5904885 YP_001675924.1 CDS Shal_3725 NC_010334.1 4522363 4523070 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0678 oligopeptide transport ATP-binding protein OppD; ABC transporter-like protein complement(4522363..4523070) Shewanella halifaxensis HAW-EB4 5904886 YP_001675925.1 CDS Shal_3726 NC_010334.1 4523070 4523894 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC; binding-protein-dependent transport system inner membrane protein complement(4523070..4523894) Shewanella halifaxensis HAW-EB4 5904248 YP_001675926.1 CDS Shal_3727 NC_010334.1 4523981 4524958 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: asa:ASA_1795 ABC-type dipeptide/oligopeptide/nickel transporter, permease component; binding-protein-dependent transport system inner membrane protein complement(4523981..4524958) Shewanella halifaxensis HAW-EB4 5904249 YP_001675927.1 CDS Shal_3728 NC_010334.1 4524955 4526487 R PFAM: extracellular solute-binding protein family 5; KEGG: vfi:VF0681 oligopeptide-binding protein OppA; extracellular solute-binding protein complement(4524955..4526487) Shewanella halifaxensis HAW-EB4 5906306 YP_001675928.1 CDS Shal_3729 NC_010334.1 4526674 4527084 D PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: ccv:CCV52592_1897 NikR C nickel binding domain family; CopG family transcriptional regulator 4526674..4527084 Shewanella halifaxensis HAW-EB4 5906307 YP_001675929.1 CDS Shal_3730 NC_010334.1 4527061 4527291 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbm:Shew185_3172 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4527061..4527291) Shewanella halifaxensis HAW-EB4 5904584 YP_001675930.1 CDS Shal_3731 NC_010334.1 4527360 4527545 R KEGG: vha:VIBHAR_04860 hypothetical protein; hypothetical protein complement(4527360..4527545) Shewanella halifaxensis HAW-EB4 5904585 YP_001675931.1 CDS Shal_3732 NC_010334.1 4527705 4528502 D KEGG: ppr:PBPRB1967 hypothetical protein; hypothetical protein 4527705..4528502 Shewanella halifaxensis HAW-EB4 5904586 YP_001675932.1 CDS Shal_3733 NC_010334.1 4528704 4529372 D PFAM: protein of unknown function DUF1275; KEGG: mmw:Mmwyl1_2095 protein of unknown function DUF1275; hypothetical protein 4528704..4529372 Shewanella halifaxensis HAW-EB4 5904587 YP_001675933.1 CDS Shal_3734 NC_010334.1 4529435 4529929 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ppr:PBPRA1266 putative peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(4529435..4529929) Shewanella halifaxensis HAW-EB4 5905004 YP_001675934.1 CDS Shal_3735 NC_010334.1 4530294 4531679 D PFAM: aminotransferase class V; KEGG: vpa:VPA1513 ScrA (aminotransferase); class V aminotransferase 4530294..4531679 Shewanella halifaxensis HAW-EB4 5905005 YP_001675935.1 CDS Shal_3736 NC_010334.1 4531786 4534140 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ppr:PBPRB0229 hypothetical ScrC (sensory box/GGDEF familyprotein) (involved in swarmer cell regulation); diguanylate cyclase/phosphodiesterase complement(4531786..4534140) Shewanella halifaxensis HAW-EB4 5906819 YP_001675936.1 CDS Shal_3737 NC_010334.1 4534142 4535080 R SMART: extracellular solute-binding protein family 3; KEGG: ppr:PBPRB0228 putative ScrB; extracellular solute-binding protein complement(4534142..4535080) Shewanella halifaxensis HAW-EB4 5906820 YP_001675937.1 CDS Shal_3738 NC_010334.1 4535423 4535758 R PFAM: Protein of unknown function DUF1971; KEGG: vfi:VF1779 tellurite resistance protein TehB; hypothetical protein complement(4535423..4535758) Shewanella halifaxensis HAW-EB4 5906910 YP_001675938.1 CDS Shal_3739 NC_010334.1 4535819 4537012 R catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase complement(4535819..4537012) Shewanella halifaxensis HAW-EB4 5906911 YP_001675939.1 CDS Shal_3740 NC_010334.1 4536984 4538474 R detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin complement(4536984..4538474) Shewanella halifaxensis HAW-EB4 5906055 YP_001675940.1 CDS Shal_3741 NC_010334.1 4538797 4540347 R KEGG: rba:RB6211 hypothetical protein; hypothetical protein complement(4538797..4540347) Shewanella halifaxensis HAW-EB4 5906056 YP_001675941.1 CDS Shal_3742 NC_010334.1 4540709 4541590 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4540709..4541590) Shewanella halifaxensis HAW-EB4 5906204 YP_001675942.1 CDS Shal_3743 NC_010334.1 4541765 4542856 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(4541765..4542856) Shewanella halifaxensis HAW-EB4 5906205 YP_001675943.1 CDS Shal_3744 NC_010334.1 4543018 4544178 R PFAM: aminotransferase class I and II; KEGG: pcr:Pcryo_0738 aminotransferase, class I and II; class I/II aminotransferase complement(4543018..4544178) Shewanella halifaxensis HAW-EB4 5906210 YP_001675944.1 CDS Shal_3745 NC_010334.1 4544402 4546585 R PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; KEGG: son:SO_4085 chitinase A; glycoside hydrolase family protein complement(4544402..4546585) Shewanella halifaxensis HAW-EB4 5906211 YP_001675945.1 CDS Shal_3746 NC_010334.1 4547185 4547496 D KEGG: vvy:VVA1355 hypothetical protein; hypothetical protein 4547185..4547496 Shewanella halifaxensis HAW-EB4 5906426 YP_001675946.1 CDS Shal_3747 NC_010334.1 4547493 4548524 D KEGG: vvy:VVA1354 multidrug resistance efflux pump; multidrug resistance efflux pump 4547493..4548524 Shewanella halifaxensis HAW-EB4 5906427 YP_001675947.1 CDS Shal_3748 NC_010334.1 4548606 4549283 R KEGG: shm:Shewmr7_0124 hypothetical protein; hypothetical protein complement(4548606..4549283) Shewanella halifaxensis HAW-EB4 5906901 YP_001675948.1 CDS Shal_3749 NC_010334.1 4550309 4550560 D KEGG: sfr:Sfri_3640 hypothetical protein; hypothetical protein 4550309..4550560 Shewanella halifaxensis HAW-EB4 5906902 YP_001675949.1 CDS Shal_3750 NC_010334.1 4551209 4552579 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: bha:BH0608 hypothetical protein; xanthine/uracil/vitamin C permease 4551209..4552579 Shewanella halifaxensis HAW-EB4 5905888 YP_001675950.1 CDS Shal_3751 NC_010334.1 4552647 4554179 R PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: aha:AHA_2651 inner membrane protein YoaE; integral membrane protein TerC complement(4552647..4554179) Shewanella halifaxensis HAW-EB4 5905889 YP_001675951.1 CDS Shal_3752 NC_010334.1 4554657 4555520 D KEGG: slo:Shew_3216 hypothetical protein; hypothetical protein 4554657..4555520 Shewanella halifaxensis HAW-EB4 5905632 YP_001675952.1 CDS Shal_3753 NC_010334.1 4555580 4556338 R KEGG: slo:Shew_0483 hypothetical protein; hypothetical protein complement(4555580..4556338) Shewanella halifaxensis HAW-EB4 5905633 YP_001675953.1 CDS Shal_3754 NC_010334.1 4556341 4557555 R KEGG: slo:Shew_0482 hypothetical protein; hypothetical protein complement(4556341..4557555) Shewanella halifaxensis HAW-EB4 5905656 YP_001675954.1 CDS Shal_3755 NC_010334.1 4557722 4560958 R PFAM: histidine kinase HAMP region domain protein; SMART: extracellular solute-binding protein family 3; metal-dependent phosphohydrolase HD region; KEGG: slo:Shew_3366 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4557722..4560958) Shewanella halifaxensis HAW-EB4 5905657 YP_001675955.1 CDS Shal_3756 NC_010334.1 4561829 4562110 D PFAM: protein of unknown function DUF1255; KEGG: pcr:Pcryo_0835 protein of unknown function DUF1255; hypothetical protein 4561829..4562110 Shewanella halifaxensis HAW-EB4 5905256 YP_001675956.1 CDS Shal_3757 NC_010334.1 4562231 4562755 R KEGG: pha:PSHAa2221 hypothetical protein; hypothetical protein complement(4562231..4562755) Shewanella halifaxensis HAW-EB4 5905257 YP_001675957.1 CDS Shal_3758 NC_010334.1 4562914 4563363 R KEGG: slo:Shew_0481 hypothetical protein; hypothetical protein complement(4562914..4563363) Shewanella halifaxensis HAW-EB4 5903410 YP_001675958.1 CDS Shal_3759 NC_010334.1 4563472 4564128 R PFAM: pentapeptide repeat protein; KEGG: ppr:PBPRB0957 hypothetical protein; pentapeptide repeat-containing protein complement(4563472..4564128) Shewanella halifaxensis HAW-EB4 5903411 YP_001675959.1 CDS Shal_3760 NC_010334.1 4564743 4565246 R PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_2884 glycine cleavage system regulatory protein-like protein; amino acid-binding ACT domain-containing protein complement(4564743..4565246) Shewanella halifaxensis HAW-EB4 5905191 YP_001675960.1 CDS Shal_3761 NC_010334.1 4565509 4567212 R PFAM: BCCT transporter; KEGG: vha:VIBHAR_06536 hypothetical protein; BCCT transporter complement(4565509..4567212) Shewanella halifaxensis HAW-EB4 5905192 YP_001675961.1 CDS Shal_3762 NC_010334.1 4567558 4569165 R PFAM: Amidohydrolase 3; KEGG: ppr:PBPRB0017 hypothetical deacylase; N-acyl-D-aspartate deacylase complement(4567558..4569165) Shewanella halifaxensis HAW-EB4 5904735 YP_001675962.1 CDS Shal_3763 NC_010334.1 4569289 4570584 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: dde:Dde_3036 CBS; hypothetical protein complement(4569289..4570584) Shewanella halifaxensis HAW-EB4 5904736 YP_001675963.1 CDS Shal_3764 NC_010334.1 4571121 4571477 D hypothetical protein 4571121..4571477 Shewanella halifaxensis HAW-EB4 5904483 YP_001675964.1 CDS Shal_3765 NC_010334.1 4572626 4574776 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: aha:AHA_0559 2',3'-cyclic-nucleotide 2'-phosphodiesterase; metallophosphoesterase 4572626..4574776 Shewanella halifaxensis HAW-EB4 5904484 YP_001675965.1 CDS Shal_3766 NC_010334.1 4575155 4576042 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: syf:Synpcc7942_1811 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase complement(4575155..4576042) Shewanella halifaxensis HAW-EB4 5903194 YP_001675966.1 CDS Shal_3767 NC_010334.1 4576841 4577755 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: vfi:VF1108 chaperone protein DnaJ; chaperone DnaJ domain-containing protein complement(4576841..4577755) Shewanella halifaxensis HAW-EB4 5903195 YP_001675967.1 CDS Shal_3768 NC_010334.1 4578316 4578876 D KEGG: mxa:MXAN_4378 hypothetical protein; hypothetical protein 4578316..4578876 Shewanella halifaxensis HAW-EB4 5904635 YP_001675968.1 CDS Shal_3769 NC_010334.1 4579135 4580106 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(4579135..4580106) Shewanella halifaxensis HAW-EB4 5904636 YP_001675969.1 CDS Shal_3770 NC_010334.1 4580182 4581525 D PFAM: integrase family protein; KEGG: ecv:APECO1_1715 integrase; integrase family protein 4580182..4581525 Shewanella halifaxensis HAW-EB4 5903565 YP_001675970.1 CDS Shal_3771 NC_010334.1 4581734 4581928 D KEGG: vco:VC0395_1060 hypothetical protein; hypothetical protein 4581734..4581928 Shewanella halifaxensis HAW-EB4 5903566 YP_001675971.1 CDS Shal_3772 NC_010334.1 4581944 4582426 D KEGG: vco:VC0395_1061 hypothetical protein; hypothetical protein 4581944..4582426 Shewanella halifaxensis HAW-EB4 5903554 YP_001675972.1 CDS Shal_3773 NC_010334.1 4582600 4583157 D PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ppd:Ppro_1125 resolvase, N-terminal domain; resolvase domain-containing protein 4582600..4583157 Shewanella halifaxensis HAW-EB4 5903555 YP_001675973.1 CDS Shal_3774 NC_010334.1 4583150 4583971 D hypothetical protein 4583150..4583971 Shewanella halifaxensis HAW-EB4 5903480 YP_001675974.1 CDS Shal_3775 NC_010334.1 4584186 4584998 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: gtn:GTNG_2076 hypothetical protein; HNH endonuclease complement(4584186..4584998) Shewanella halifaxensis HAW-EB4 5903481 YP_001675975.1 CDS groEL NC_010334.1 4585136 4586779 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4585136..4586779) Shewanella halifaxensis HAW-EB4 5903627 YP_001675976.1 CDS groES NC_010334.1 4586869 4587159 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4586869..4587159) Shewanella halifaxensis HAW-EB4 5903628 YP_001675977.1 CDS Shal_3778 NC_010334.1 4587408 4588769 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: slo:Shew_0470 MATE efflux family protein; MATE efflux family protein 4587408..4588769 Shewanella halifaxensis HAW-EB4 5903688 YP_001675978.1 CDS Shal_3779 NC_010334.1 4588825 4589481 D PFAM: pentapeptide repeat protein; KEGG: slo:Shew_0469 pentapeptide repeat protein; pentapeptide repeat-containing protein 4588825..4589481 Shewanella halifaxensis HAW-EB4 5903689 YP_001675979.1 CDS Shal_3780 NC_010334.1 4589651 4590049 D KEGG: slo:Shew_0465 hypothetical protein; hypothetical protein 4589651..4590049 Shewanella halifaxensis HAW-EB4 5903727 YP_001675980.1 CDS Shal_3781 NC_010334.1 4590158 4591108 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_0468 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4590158..4591108) Shewanella halifaxensis HAW-EB4 5903728 YP_001675981.1 CDS Shal_3782 NC_010334.1 4591303 4592385 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0467 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4591303..4592385 Shewanella halifaxensis HAW-EB4 5903764 YP_001675982.1 CDS Shal_3783 NC_010334.1 4592501 4595578 D PFAM: acriflavin resistance protein; KEGG: slo:Shew_0466 acriflavin resistance protein; acriflavin resistance protein 4592501..4595578 Shewanella halifaxensis HAW-EB4 5903765 YP_001675983.1 CDS Shal_3784 NC_010334.1 4595807 4596202 D KEGG: slo:Shew_0464 hypothetical protein; hypothetical protein 4595807..4596202 Shewanella halifaxensis HAW-EB4 5903766 YP_001675984.1 CDS Shal_3785 NC_010334.1 4596262 4596618 D KEGG: slo:Shew_0463 hypothetical protein; hypothetical protein 4596262..4596618 Shewanella halifaxensis HAW-EB4 5903767 YP_001675985.1 CDS Shal_3786 NC_010334.1 4596776 4597102 R KEGG: slo:Shew_0462 hypothetical protein; hypothetical protein complement(4596776..4597102) Shewanella halifaxensis HAW-EB4 5903816 YP_001675986.1 CDS Shal_3787 NC_010334.1 4597228 4597698 R KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein complement(4597228..4597698) Shewanella halifaxensis HAW-EB4 5903817 YP_001675987.1 CDS Shal_3788 NC_010334.1 4597848 4600253 R KEGG: slo:Shew_0460 hypothetical protein; hypothetical protein complement(4597848..4600253) Shewanella halifaxensis HAW-EB4 5903862 YP_001675988.1 CDS Shal_3789 NC_010334.1 4600440 4604051 R KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing hybrid histidine kinase complement(4600440..4604051) Shewanella halifaxensis HAW-EB4 5903863 YP_001675989.1 CDS Shal_3790 NC_010334.1 4604328 4605722 R PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein PINc; KEGG: slo:Shew_0458 PhoH family protein; PhoH family protein complement(4604328..4605722) Shewanella halifaxensis HAW-EB4 5903990 YP_001675990.1 CDS Shal_3791 NC_010334.1 4606064 4608970 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4606064..4608970 Shewanella halifaxensis HAW-EB4 5903991 YP_001675991.1 CDS Shal_3792 NC_010334.1 4609086 4609973 D KEGG: slo:Shew_0456 hypothetical protein; hypothetical protein 4609086..4609973 Shewanella halifaxensis HAW-EB4 5904182 YP_001675992.1 CDS Shal_3793 NC_010334.1 4610059 4610550 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0455 uncharacterized protein UPF0114; hypothetical protein complement(4610059..4610550) Shewanella halifaxensis HAW-EB4 5904183 YP_001675993.1 CDS Shal_3794 NC_010334.1 4610725 4611531 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4610725..4611531) Shewanella halifaxensis HAW-EB4 5904178 YP_001675994.1 CDS Shal_3795 NC_010334.1 4611911 4612906 D PFAM: response regulator receiver; KEGG: slo:Shew_0453 response regulator receiver protein; MCP methylation inhibitor CheC 4611911..4612906 Shewanella halifaxensis HAW-EB4 5904179 YP_001675995.1 CDS Shal_3796 NC_010334.1 4612908 4613891 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0452 diguanylate cyclase; diguanylate cyclase 4612908..4613891 Shewanella halifaxensis HAW-EB4 5904126 YP_001675996.1 CDS Shal_3797 NC_010334.1 4613969 4614379 R PFAM: protein of unknown function DUF1260; KEGG: sfr:Sfri_3513 protein of unknown function DUF1260; hypothetical protein complement(4613969..4614379) Shewanella halifaxensis HAW-EB4 5904127 YP_001675997.1 CDS Shal_3798 NC_010334.1 4614409 4615137 R KEGG: slo:Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(4614409..4615137) Shewanella halifaxensis HAW-EB4 5904124 YP_001675998.1 CDS Shal_3799 NC_010334.1 4615379 4616164 R PFAM: ABC-3 protein; KEGG: sbm:Shew185_3797 ABC-3 protein; ABC-3 protein complement(4615379..4616164) Shewanella halifaxensis HAW-EB4 5904125 YP_001675999.1 CDS Shal_3800 NC_010334.1 4616291 4617217 R PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute-binding protein complement(4616291..4617217) Shewanella halifaxensis HAW-EB4 5904101 YP_001676000.1 CDS Shal_3801 NC_010334.1 4617201 4618388 R KEGG: slo:Shew_0447 hypothetical protein; hypothetical protein complement(4617201..4618388) Shewanella halifaxensis HAW-EB4 5904102 YP_001676001.1 CDS Shal_3802 NC_010334.1 4618466 4618747 R KEGG: shn:Shewana3_0564 hypothetical protein; hypothetical protein complement(4618466..4618747) Shewanella halifaxensis HAW-EB4 5904069 YP_001676002.1 CDS Shal_3803 NC_010334.1 4618978 4619103 D hypothetical protein 4618978..4619103 Shewanella halifaxensis HAW-EB4 5904070 YP_001676003.1 CDS Shal_3804 NC_010334.1 4619257 4619592 R KEGG: slo:Shew_0445 hypothetical protein; hypothetical protein complement(4619257..4619592) Shewanella halifaxensis HAW-EB4 5904060 YP_001676004.1 CDS Shal_3805 NC_010334.1 4619772 4621394 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_0444 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4619772..4621394 Shewanella halifaxensis HAW-EB4 5904061 YP_001676005.1 CDS Shal_3806 NC_010334.1 4621473 4623185 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(4621473..4623185) Shewanella halifaxensis HAW-EB4 5904001 YP_001676006.1 CDS Shal_3807 NC_010334.1 4623444 4624310 R PFAM: MaoC domain protein dehydratase; KEGG: shn:Shewana3_0558 MaoC domain protein dehydratase; dehydratase complement(4623444..4624310) Shewanella halifaxensis HAW-EB4 5904002 YP_001676007.1 CDS Shal_3808 NC_010334.1 4624419 4625303 R PFAM: GumN family protein; KEGG: slo:Shew_0438 GumN family protein; GumN family protein complement(4624419..4625303) Shewanella halifaxensis HAW-EB4 5903999 YP_001676008.1 CDS Shal_3809 NC_010334.1 4625349 4625660 D KEGG: slo:Shew_0437 hypothetical protein; hypothetical protein 4625349..4625660 Shewanella halifaxensis HAW-EB4 5904000 YP_001676009.1 CDS Shal_3810 NC_010334.1 4625788 4626312 R KEGG: sbm:Shew185_3811 hypothetical protein; hypothetical protein complement(4625788..4626312) Shewanella halifaxensis HAW-EB4 5903982 YP_001676010.1 CDS Shal_3811 NC_010334.1 4626622 4626927 D KEGG: slo:Shew_0434 hypothetical protein; hypothetical protein 4626622..4626927 Shewanella halifaxensis HAW-EB4 5903983 YP_001676011.1 CDS Shal_3812 NC_010334.1 4627323 4627631 D KEGG: slo:Shew_0433 hypothetical protein; hypothetical protein 4627323..4627631 Shewanella halifaxensis HAW-EB4 5903820 YP_001676012.1 CDS Shal_3813 NC_010334.1 4627745 4628254 R KEGG: sbm:Shew185_3814 hypothetical protein; hypothetical protein complement(4627745..4628254) Shewanella halifaxensis HAW-EB4 5903821 YP_001676013.1 CDS Shal_3814 NC_010334.1 4628435 4628830 D KEGG: slo:Shew_0431 hypothetical protein; hypothetical protein 4628435..4628830 Shewanella halifaxensis HAW-EB4 5903629 YP_001676014.1 CDS Shal_3815 NC_010334.1 4628827 4628964 D KEGG: shm:Shewmr7_3481 response regulator receiver protein; response regulator receiver protein 4628827..4628964 Shewanella halifaxensis HAW-EB4 5903630 YP_001676015.1 CDS Shal_3816 NC_010334.1 4629195 4629467 D PFAM: histone family protein DNA-binding protein; KEGG: slo:Shew_0430 histone family protein DNA-binding protein; histone family protein DNA-binding protein 4629195..4629467 Shewanella halifaxensis HAW-EB4 5903662 YP_001676016.1 CDS Shal_3817 NC_010334.1 4629721 4630413 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_0429 hypothetical protein; hypothetical protein 4629721..4630413 Shewanella halifaxensis HAW-EB4 5903663 YP_001676017.1 CDS Shal_3818 NC_010334.1 4630784 4630924 D KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein 4630784..4630924 Shewanella halifaxensis HAW-EB4 5903674 YP_001676018.1 CDS Shal_3819 NC_010334.1 4631003 4632382 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: slo:Shew_0424 amino acid carrier protein; amino acid carrier protein complement(4631003..4632382) Shewanella halifaxensis HAW-EB4 5903675 YP_001676019.1 CDS Shal_3820 NC_010334.1 4632964 4634178 R PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0420 major facilitator superfamily MFS_1; major facilitator transporter complement(4632964..4634178) Shewanella halifaxensis HAW-EB4 5903686 YP_001676020.1 CDS Shal_3821 NC_010334.1 4634411 4635430 R KEGG: shn:Shewana3_2330 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(4634411..4635430) Shewanella halifaxensis HAW-EB4 5903687 YP_001676021.1 CDS Shal_3822 NC_010334.1 4635583 4636626 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: son:SO_0534 arsenical pump membrane protein, putative; arsenical-resistance protein complement(4635583..4636626) Shewanella halifaxensis HAW-EB4 5903690 YP_001676022.1 CDS Shal_3823 NC_010334.1 4636685 4637071 R PFAM: regulatory protein ArsR; KEGG: shm:Shewmr7_3499 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(4636685..4637071) Shewanella halifaxensis HAW-EB4 5903691 YP_001676023.1 CDS Shal_3824 NC_010334.1 4637229 4638482 D KEGG: azo:azo0052 hypothetical secreted protein; hypothetical protein 4637229..4638482 Shewanella halifaxensis HAW-EB4 5903707 YP_001676024.1 CDS Shal_3825 NC_010334.1 4638633 4640015 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sbm:Shew185_0512 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(4638633..4640015) Shewanella halifaxensis HAW-EB4 5903708 YP_001676025.1 CDS Shal_3826 NC_010334.1 4640202 4640744 D PFAM: protein of unknown function DUF615; KEGG: slo:Shew_0415 protein of unknown function DUF615; hypothetical protein 4640202..4640744 Shewanella halifaxensis HAW-EB4 5903719 YP_001676026.1 CDS Shal_3827 NC_010334.1 4640933 4643449 D PFAM: Ig domain protein group 1 domain protein; KEGG: sbl:Sbal_3807 Ig domain protein, group 1 domain protein; Ig domain-containing protein 4640933..4643449 Shewanella halifaxensis HAW-EB4 5903720 YP_001676027.1 CDS Shal_3828 NC_010334.1 4643713 4644849 R PFAM: ABC-2 type transporter; KEGG: sbm:Shew185_0508 ABC-2 type transporter; ABC-2 type transporter complement(4643713..4644849) Shewanella halifaxensis HAW-EB4 5903739 YP_001676028.1 CDS Shal_3829 NC_010334.1 4644851 4646014 R PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3462 ABC-2 type transporter; ABC-2 type transporter complement(4644851..4646014) Shewanella halifaxensis HAW-EB4 5903740 YP_001676029.1 CDS Shal_3830 NC_010334.1 4646045 4647016 R PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_3639 secretion protein HlyD family protein; secretion protein HlyD family protein complement(4646045..4647016) Shewanella halifaxensis HAW-EB4 5903751 YP_001676030.1 CDS Shal_3831 NC_010334.1 4647006 4648397 R PFAM: outer membrane efflux protein; KEGG: slo:Shew_0411 outer membrane efflux protein; outer membrane efflux protein complement(4647006..4648397) Shewanella halifaxensis HAW-EB4 5903752 YP_001676031.1 CDS Shal_3832 NC_010334.1 4648521 4649969 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: she:Shewmr4_3465 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(4648521..4649969) Shewanella halifaxensis HAW-EB4 5903755 YP_001676032.1 CDS Shal_3833 NC_010334.1 4650059 4650889 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbl:Sbal_3816 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4650059..4650889) Shewanella halifaxensis HAW-EB4 5903756 YP_001676033.1 CDS Shal_3834 NC_010334.1 4650813 4655069 R KEGG: slo:Shew_0408 hypothetical protein; hypothetical protein complement(4650813..4655069) Shewanella halifaxensis HAW-EB4 5903761 YP_001676034.1 CDS Shal_3835 NC_010334.1 4655069 4656577 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4655069..4656577) Shewanella halifaxensis HAW-EB4 5903762 YP_001676035.1 CDS Shal_3836 NC_010334.1 4656737 4657345 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: slo:Shew_0406 maf protein; maf protein complement(4656737..4657345) Shewanella halifaxensis HAW-EB4 5903768 YP_001676036.1 CDS Shal_3837 NC_010334.1 4657434 4657922 R PFAM: Rod shape-determining protein MreD; KEGG: slo:Shew_0405 rod shape-determining protein MreD; rod shape-determining protein MreD complement(4657434..4657922) Shewanella halifaxensis HAW-EB4 5903769 YP_001676037.1 CDS Shal_3838 NC_010334.1 4657919 4658806 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4657919..4658806) Shewanella halifaxensis HAW-EB4 5903770 YP_001676038.1 CDS Shal_3839 NC_010334.1 4658848 4659897 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4658848..4659897) Shewanella halifaxensis HAW-EB4 5903771 YP_001676039.1 CDS Shal_3840 NC_010334.1 4660070 4664419 R SMART: PA14-related domain protein; KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ; PA14 domain-containing protein complement(4660070..4664419) Shewanella halifaxensis HAW-EB4 5903772 YP_001676040.1 CDS Shal_3841 NC_010334.1 4664484 4665050 R KEGG: slo:Shew_0401 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP complement(4664484..4665050) Shewanella halifaxensis HAW-EB4 5903773 YP_001676041.1 CDS Shal_3842 NC_010334.1 4665040 4665924 R KEGG: slo:Shew_0400 methylation site containing protein; methylation site containing protein complement(4665040..4665924) Shewanella halifaxensis HAW-EB4 5903802 YP_001676042.1 CDS Shal_3843 NC_010334.1 4665924 4666499 R KEGG: spc:Sputcn32_0570 methylation site containing protein; methylation site containing protein complement(4665924..4666499) Shewanella halifaxensis HAW-EB4 5903803 YP_001676043.1 CDS Shal_3844 NC_010334.1 4666486 4666974 R KEGG: saz:Sama_0462 MSHA pilin protein MshC; MSHA pilin protein MshC complement(4666486..4666974) Shewanella halifaxensis HAW-EB4 5903814 YP_001676044.1 CDS Shal_3845 NC_010334.1 4667184 4667669 R KEGG: slo:Shew_0397 methylation site containing protein; methylation site containing protein complement(4667184..4667669) Shewanella halifaxensis HAW-EB4 5903815 YP_001676045.1 CDS Shal_3846 NC_010334.1 4667690 4668205 R KEGG: son:SO_4105 MSHA pilin protein MshA; MSHA pilin protein MshA complement(4667690..4668205) Shewanella halifaxensis HAW-EB4 5903818 YP_001676046.1 CDS Shal_3847 NC_010334.1 4668324 4668932 R KEGG: shn:Shewana3_3657 methylation site containing protein; methylation site containing protein complement(4668324..4668932) Shewanella halifaxensis HAW-EB4 5903819 YP_001676047.1 CDS Shal_3848 NC_010334.1 4669012 4669452 R KEGG: slo:Shew_0394 hypothetical protein; hypothetical protein complement(4669012..4669452) Shewanella halifaxensis HAW-EB4 5903822 YP_001676048.1 CDS Shal_3849 NC_010334.1 4669525 4670745 R PFAM: type II secretion system protein; KEGG: shw:Sputw3181_3608 type II secretion system protein; type II secretion system protein complement(4669525..4670745) Shewanella halifaxensis HAW-EB4 5903823 YP_001676049.1 CDS Shal_3850 NC_010334.1 4670748 4672481 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: sbm:Shew185_0487 type II secretion system protein E; type II secretion system protein E complement(4670748..4672481) Shewanella halifaxensis HAW-EB4 5903824 YP_001676050.1 CDS Shal_3851 NC_010334.1 4672481 4673773 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_3484 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(4672481..4673773) Shewanella halifaxensis HAW-EB4 5903825 YP_001676051.1 CDS Shal_3852 NC_010334.1 4673770 4674678 R KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM complement(4673770..4674678) Shewanella halifaxensis HAW-EB4 5903852 YP_001676052.1 CDS Shal_3853 NC_010334.1 4674681 4676354 R TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: slo:Shew_0389 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL complement(4674681..4676354) Shewanella halifaxensis HAW-EB4 5903853 YP_001676053.1 CDS Shal_3854 NC_010334.1 4676360 4676695 R KEGG: shw:Sputw3181_3613 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK complement(4676360..4676695) Shewanella halifaxensis HAW-EB4 5903884 YP_001676054.1 CDS Shal_3855 NC_010334.1 4676676 4677332 R KEGG: slo:Shew_0387 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ complement(4676676..4677332) Shewanella halifaxensis HAW-EB4 5903885 YP_001676055.1 CDS Shal_3856 NC_010334.1 4677329 4677937 R KEGG: slo:Shew_0386 fimbrial assembly family protein; fimbrial assembly family protein complement(4677329..4677937) Shewanella halifaxensis HAW-EB4 5905990 YP_001676056.1 CDS Shal_3857 NC_010334.1 4677934 4678815 R KEGG: sbm:Shew185_0480 conserved hypothetical biogenesis protein MshI; biogenesis protein MshI complement(4677934..4678815) Shewanella halifaxensis HAW-EB4 5905991 YP_001676057.1 CDS Shal_3858 NC_010334.1 4679031 4680938 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(4679031..4680938) Shewanella halifaxensis HAW-EB4 5905798 YP_001676058.1 CDS Shal_3859 NC_010334.1 4681120 4682370 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: slo:Shew_0383 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase complement(4681120..4682370) Shewanella halifaxensis HAW-EB4 5905799 YP_001676059.1 CDS Shal_3860 NC_010334.1 4682575 4683348 R PFAM: nuclease (SNase domain protein); KEGG: slo:Shew_0382 nuclease (SNase domain protein); nuclease complement(4682575..4683348) Shewanella halifaxensis HAW-EB4 5905754 YP_001676060.1 CDS rpmE NC_010334.1 4683616 4683828 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(4683616..4683828) Shewanella halifaxensis HAW-EB4 5905755 YP_001676061.1 CDS Shal_3862 NC_010334.1 4684030 4684758 R KEGG: slo:Shew_0380 hypothetical protein; hypothetical protein complement(4684030..4684758) Shewanella halifaxensis HAW-EB4 5905611 YP_001676062.1 CDS Shal_3863 NC_010334.1 4685064 4687259 D KEGG: slo:Shew_0379 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 4685064..4687259 Shewanella halifaxensis HAW-EB4 5905612 YP_001676063.1 CDS argS NC_010334.1 4687384 4689129 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4687384..4689129 Shewanella halifaxensis HAW-EB4 5905510 YP_001676064.1 CDS Shal_3865 NC_010334.1 4689140 4689715 D PFAM: Sporulation domain protein; KEGG: slo:Shew_0377 sporulation domain protein; sporulation domain-containing protein 4689140..4689715 Shewanella halifaxensis HAW-EB4 5905511 YP_001676065.1 CDS Shal_3866 NC_010334.1 4689865 4690389 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4689865..4690389 Shewanella halifaxensis HAW-EB4 5905219 YP_001676066.1 CDS hslU NC_010334.1 4690480 4691805 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4690480..4691805 Shewanella halifaxensis HAW-EB4 5905220 YP_001676067.1 CDS Shal_3868 NC_010334.1 4691927 4692322 D PFAM: protein of unknown function DUF971; KEGG: slo:Shew_0373 protein of unknown function DUF971; hypothetical protein 4691927..4692322 Shewanella halifaxensis HAW-EB4 5903115 YP_001676068.1 CDS Shal_3869 NC_010334.1 4692558 4693262 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4692558..4693262 Shewanella halifaxensis HAW-EB4 5903116 YP_001676069.1 CDS Shal_3870 NC_010334.1 4693365 4694537 D PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_2502 major facilitator superfamily MFS_1; hypothetical protein 4693365..4694537 Shewanella halifaxensis HAW-EB4 5903743 YP_001676070.1 CDS Shal_3871 NC_010334.1 4694594 4695265 R PFAM: cyclic nucleotide-binding; KEGG: shn:Shewana3_2501 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(4694594..4695265) Shewanella halifaxensis HAW-EB4 5903744 YP_001676071.1 CDS Shal_3872 NC_010334.1 4695347 4696069 R KEGG: hch:HCH_06317 GMP synthase - glutamine amidotransferase domain; GMP synthase complement(4695347..4696069) Shewanella halifaxensis HAW-EB4 5904132 YP_001676072.1 CDS Shal_3873 NC_010334.1 4696141 4697310 R PFAM: iron-containing alcohol dehydrogenase; KEGG: hch:HCH_06318 alcohol dehydrogenase, class IV; iron-containing alcohol dehydrogenase complement(4696141..4697310) Shewanella halifaxensis HAW-EB4 5904133 YP_001676073.1 CDS Shal_3874 NC_010334.1 4697357 4698760 R PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_06320 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase complement(4697357..4698760) Shewanella halifaxensis HAW-EB4 5904083 YP_001676074.1 CDS Shal_3875 NC_010334.1 4698815 4700182 R PFAM: glutamine synthetase catalytic region; KEGG: ppr:PBPRB0862 hypothetical protein; glutamine synthetase complement(4698815..4700182) Shewanella halifaxensis HAW-EB4 5904084 YP_001676075.1 CDS Shal_3876 NC_010334.1 4700598 4700849 R KEGG: slo:Shew_3369 hypothetical protein; hypothetical protein complement(4700598..4700849) Shewanella halifaxensis HAW-EB4 5904011 YP_001676076.1 CDS Shal_3877 NC_010334.1 4701186 4701671 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4701186..4701671 Shewanella halifaxensis HAW-EB4 5904012 YP_001676077.1 CDS Shal_3878 NC_010334.1 4701814 4702848 D PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_3372 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 4701814..4702848 Shewanella halifaxensis HAW-EB4 5904130 YP_001676078.1 CDS Shal_3879 NC_010334.1 4703053 4703808 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_3373 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 4703053..4703808 Shewanella halifaxensis HAW-EB4 5904131 YP_001676079.1 CDS Shal_3880 NC_010334.1 4703820 4704443 D PFAM: Sterol-binding domain protein; KEGG: slo:Shew_3374 protein of unknown function DUF1243; sterol-binding domain-containing protein 4703820..4704443 Shewanella halifaxensis HAW-EB4 5903930 YP_001676080.1 CDS Shal_3881 NC_010334.1 4704440 4706089 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: slo:Shew_3375 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 4704440..4706089 Shewanella halifaxensis HAW-EB4 5903931 YP_001676081.1 CDS Shal_3882 NC_010334.1 4706150 4706437 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO_4202 Sec-independent protein translocase protein TatA; twin arginine-targeting protein translocase 4706150..4706437 Shewanella halifaxensis HAW-EB4 5903995 YP_001676082.1 CDS Shal_3883 NC_010334.1 4706444 4706839 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: slo:Shew_3377 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 4706444..4706839 Shewanella halifaxensis HAW-EB4 5903996 YP_001676083.1 CDS Shal_3884 NC_010334.1 4706843 4707610 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: slo:Shew_3378 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4706843..4707610 Shewanella halifaxensis HAW-EB4 5903948 YP_001676084.1 CDS Shal_3885 NC_010334.1 4707784 4708290 D KEGG: shn:Shewana3_3731 hypothetical protein; hypothetical protein 4707784..4708290 Shewanella halifaxensis HAW-EB4 5903949 YP_001676085.1 CDS Shal_3886 NC_010334.1 4708290 4709084 D PFAM: TatD-related deoxyribonuclease; KEGG: shw:Sputw3181_3671 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease 4708290..4709084 Shewanella halifaxensis HAW-EB4 5903830 YP_001676086.1 CDS Shal_3887 NC_010334.1 4709084 4710955 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: slo:Shew_3381 diguanylate cyclase; diguanylate cyclase 4709084..4710955 Shewanella halifaxensis HAW-EB4 5903831 YP_001676087.1 CDS Shal_3888 NC_010334.1 4710980 4711990 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4710980..4711990 Shewanella halifaxensis HAW-EB4 5905738 YP_001676088.1 CDS Shal_3889 NC_010334.1 4719604 4720137 D KEGG: shw:Sputw3181_0509 hypothetical protein; hypothetical protein 4719604..4720137 Shewanella halifaxensis HAW-EB4 5905844 YP_001676089.1 CDS Shal_3890 NC_010334.1 4720211 4723192 R PFAM: TonB-dependent receptor; Cna B domain protein; TonB-dependent receptor plug; KEGG: saz:Sama_3213 putative oar protein; TonB-dependent receptor complement(4720211..4723192) Shewanella halifaxensis HAW-EB4 5903365 YP_001676090.1 CDS Shal_3891 NC_010334.1 4723639 4724550 R PFAM: Ppx/GppA phosphatase; KEGG: sbm:Shew185_3950 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(4723639..4724550) Shewanella halifaxensis HAW-EB4 5903366 YP_001676091.1 CDS Shal_3892 NC_010334.1 4724564 4725874 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4724564..4725874) Shewanella halifaxensis HAW-EB4 5905664 YP_001676092.1 CDS Shal_3893 NC_010334.1 4726279 4726605 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shn:Shewana3_0409 thioredoxin; thioredoxin 4726279..4726605 Shewanella halifaxensis HAW-EB4 5905665 YP_001676093.1 CDS rho NC_010334.1 4726845 4728110 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4726845..4728110 Shewanella halifaxensis HAW-EB4 5902886 YP_001676094.1 CDS Shal_3895 NC_010334.1 4728211 4729125 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_0336 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4728211..4729125) Shewanella halifaxensis HAW-EB4 5902887 YP_001676095.1 CDS frdB NC_010334.1 4729259 4730002 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(4729259..4730002) Shewanella halifaxensis HAW-EB4 5903177 YP_001676096.1 CDS Shal_3897 NC_010334.1 4729999 4731999 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(4729999..4731999) Shewanella halifaxensis HAW-EB4 5903178 YP_001676097.1 CDS Shal_3898 NC_010334.1 4732056 4732730 R PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: sbm:Shew185_3961 fumarate reductase respiratory complex transmembrane subunit; fumarate reductase respiratory complex transmembrane subunit complement(4732056..4732730) Shewanella halifaxensis HAW-EB4 5904858 YP_001676098.1 CDS Shal_3899 NC_010334.1 4732890 4733594 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(4732890..4733594) Shewanella halifaxensis HAW-EB4 5904859 YP_001676099.1 CDS prmA NC_010334.1 4733960 4734841 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 4733960..4734841 Shewanella halifaxensis HAW-EB4 5904345 YP_001676100.1 CDS Shal_3901 NC_010334.1 4734993 4735961 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: slo:Shew_0330 putative TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein 4734993..4735961 Shewanella halifaxensis HAW-EB4 5904346 YP_001676101.1 CDS fis NC_010334.1 4735979 4736284 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4735979..4736284 Shewanella halifaxensis HAW-EB4 5904470 YP_001676102.1 CDS Shal_3903 NC_010334.1 4736682 4738214 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase; leucyl aminopeptidase 4736682..4738214 Shewanella halifaxensis HAW-EB4 5904471 YP_001676103.1 CDS Shal_3904 NC_010334.1 4738355 4741522 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1959 putative RND efflux system protein; CzcA family heavy metal efflux protein complement(4738355..4741522) Shewanella halifaxensis HAW-EB4 5903224 YP_001676104.1 CDS Shal_3905 NC_010334.1 4741534 4742688 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cps:CPS_1958 putative RND efflux system protein, MFP subunit; biotin/lipoyl attachment domain-containing protein complement(4741534..4742688) Shewanella halifaxensis HAW-EB4 5903225 YP_001676105.1 CDS Shal_3906 NC_010334.1 4742685 4744025 R PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein complement(4742685..4744025) Shewanella halifaxensis HAW-EB4 5904662 YP_001676106.1 CDS Shal_3907 NC_010334.1 4744149 4744559 R hypothetical protein complement(4744149..4744559) Shewanella halifaxensis HAW-EB4 5904663 YP_001676107.1 CDS Shal_3908 NC_010334.1 4744905 4745627 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sbm:Shew185_3967 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation-binding domain-containing protein 4744905..4745627 Shewanella halifaxensis HAW-EB4 5906086 YP_001676108.1 CDS Shal_3909 NC_010334.1 4745721 4746437 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shn:Shewana3_0394 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(4745721..4746437) Shewanella halifaxensis HAW-EB4 5906087 YP_001676109.1 CDS Shal_3910 NC_010334.1 4746437 4747348 R TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbl:Sbal_3993 tyrosine recombinase XerC; tyrosine recombinase XerC complement(4746437..4747348) Shewanella halifaxensis HAW-EB4 5903035 YP_001676110.1 CDS Shal_3911 NC_010334.1 4747361 4747993 R PFAM: protein of unknown function DUF484; KEGG: slo:Shew_0324 protein of unknown function DUF484; hypothetical protein complement(4747361..4747993) Shewanella halifaxensis HAW-EB4 5903036 YP_001676111.1 CDS dapF NC_010334.1 4747990 4748850 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(4747990..4748850) Shewanella halifaxensis HAW-EB4 5905912 YP_001676112.1 CDS Shal_3913 NC_010334.1 4748887 4750131 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: slo:Shew_0322 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(4748887..4750131) Shewanella halifaxensis HAW-EB4 5905913 YP_001676113.1 CDS Shal_3914 NC_010334.1 4750137 4750313 R KEGG: sbl:Sbal_3997 hypothetical protein; hypothetical protein complement(4750137..4750313) Shewanella halifaxensis HAW-EB4 5904379 YP_001676114.1 CDS Shal_3915 NC_010334.1 4750725 4751054 D PFAM: Frataxin family protein; KEGG: sbm:Shew185_3976 frataxin family protein; frataxin family protein 4750725..4751054 Shewanella halifaxensis HAW-EB4 5904380 YP_001676115.1 CDS cyaA NC_010334.1 4751136 4753559 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(4751136..4753559) Shewanella halifaxensis HAW-EB4 5903008 YP_001676116.1 CDS hemC NC_010334.1 4753759 4754691 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4753759..4754691 Shewanella halifaxensis HAW-EB4 5903009 YP_001676117.1 CDS Shal_3918 NC_010334.1 4754701 4755432 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: spc:Sputcn32_3588 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 4754701..4755432 Shewanella halifaxensis HAW-EB4 5902815 YP_001676118.1 CDS Shal_3919 NC_010334.1 4755498 4756682 D PFAM: protein of unknown function DUF513 hemX; KEGG: slo:Shew_0316 protein of unknown function DUF513, HemX; hypothetical protein 4755498..4756682 Shewanella halifaxensis HAW-EB4 5902816 YP_001676119.1 CDS Shal_3920 NC_010334.1 4756682 4757851 D PFAM: HemY domain protein; KEGG: slo:Shew_0315 HemY domain protein; HemY domain-containing protein 4756682..4757851 Shewanella halifaxensis HAW-EB4 5902793 YP_001676120.1 CDS Shal_3921 NC_010334.1 4758131 4764460 D KEGG: slo:Shew_0314 putative outer membrane adhesin like proteiin; TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; SMART: Cadherin; putative outer membrane adhesin-like protein 4758131..4764460 Shewanella halifaxensis HAW-EB4 5902794 YP_001676121.1 CDS Shal_3922 NC_010334.1 4764697 4776831 D TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: shn:Shewana3_0382 putative outer membrane adhesin like proteiin; putative outer membrane adhesin-like protein 4764697..4776831 Shewanella halifaxensis HAW-EB4 5902944 YP_001676122.1 CDS Shal_3923 NC_010334.1 4776944 4779121 D KEGG: slo:Shew_0312 ABC transporter-related protein; TIGRFAM: ABC transporter transmembrane region type 1; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; ABC transporter transmembrane protein 4776944..4779121 Shewanella halifaxensis HAW-EB4 5902945 YP_001676123.1 CDS Shal_3924 NC_010334.1 4779118 4780500 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0311 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 4779118..4780500 Shewanella halifaxensis HAW-EB4 5903280 YP_001676124.1 CDS Shal_3925 NC_010334.1 4780534 4781949 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: slo:Shew_0310 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 4780534..4781949 Shewanella halifaxensis HAW-EB4 5903281 YP_001676125.1 CDS Shal_3926 NC_010334.1 4781946 4782551 D PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_0309 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4781946..4782551 Shewanella halifaxensis HAW-EB4 5902787 YP_001676126.1 CDS Shal_3927 NC_010334.1 4782570 4783277 D KEGG: shn:Shewana3_0377 hypothetical protein; hypothetical protein 4782570..4783277 Shewanella halifaxensis HAW-EB4 5902788 YP_001676127.1 CDS Shal_3928 NC_010334.1 4783286 4785205 D PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: slo:Shew_0307 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4783286..4785205 Shewanella halifaxensis HAW-EB4 5902776 YP_001676128.1 CDS Shal_3929 NC_010334.1 4786102 4788831 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4786102..4788831 Shewanella halifaxensis HAW-EB4 5904385 YP_001676129.1 CDS Shal_3930 NC_010334.1 4788862 4790877 R TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: sbm:Shew185_3990 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep complement(4788862..4790877) Shewanella halifaxensis HAW-EB4 5904921 YP_001676130.1 CDS Shal_3931 NC_010334.1 4791071 4791703 D PFAM: regulatory protein TetR; KEGG: son:SO_4326 transcriptional regulator, TetR family; TetR family transcriptional regulator 4791071..4791703 Shewanella halifaxensis HAW-EB4 5904922 YP_001676131.1 CDS Shal_3932 NC_010334.1 4791718 4792836 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4791718..4792836 Shewanella halifaxensis HAW-EB4 5905980 YP_001676132.1 CDS Shal_3933 NC_010334.1 4792851 4795931 D PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_0371 acriflavin resistance protein; acriflavin resistance protein 4792851..4795931 Shewanella halifaxensis HAW-EB4 5905981 YP_001676133.1 CDS Shal_3934 NC_010334.1 4796100 4796354 D PFAM: protein of unknown function DUF526; KEGG: slo:Shew_0304 protein of unknown function DUF526; hypothetical protein 4796100..4796354 Shewanella halifaxensis HAW-EB4 5906074 YP_001676134.1 CDS Shal_3935 NC_010334.1 4796588 4797388 D PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_0302 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4796588..4797388 Shewanella halifaxensis HAW-EB4 5906075 YP_001676135.1 CDS Shal_3936 NC_010334.1 4797498 4797986 D PFAM: regulatory protein AsnC/Lrp family; KEGG: slo:Shew_0301 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4797498..4797986 Shewanella halifaxensis HAW-EB4 5906214 YP_001676136.1 CDS Shal_3937 NC_010334.1 4798332 4799687 D PFAM: sodium:neurotransmitter symporter; KEGG: slo:Shew_0300 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 4798332..4799687 Shewanella halifaxensis HAW-EB4 5906215 YP_001676137.1 CDS Shal_3938 NC_010334.1 4799874 4801859 D TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_3408 TonB-dependent copper receptor; TonB-dependent copper receptor 4799874..4801859 Shewanella halifaxensis HAW-EB4 5906309 YP_001676138.1 CDS Shal_3939 NC_010334.1 4801943 4803079 R PFAM: aminotransferase class V; KEGG: shw:Sputw3181_3750 serine--pyruvate transaminase; serine--pyruvate transaminase complement(4801943..4803079) Shewanella halifaxensis HAW-EB4 5906310 YP_001676139.1 CDS Shal_3940 NC_010334.1 4803346 4804899 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(4803346..4804899) Shewanella halifaxensis HAW-EB4 5906325 YP_001676140.1 CDS Shal_3941 NC_010334.1 4804928 4806775 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4804928..4806775) Shewanella halifaxensis HAW-EB4 5906326 YP_001676141.1 CDS Shal_3942 NC_010334.1 4807350 4808279 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4807350..4808279) Shewanella halifaxensis HAW-EB4 5905789 YP_001676142.1 CDS Shal_3943 NC_010334.1 4808284 4808550 R KEGG: shw:Sputw3181_3753 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(4808284..4808550) Shewanella halifaxensis HAW-EB4 5905790 YP_001676143.1 CDS Shal_3944 NC_010334.1 4808626 4810320 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(4808626..4810320) Shewanella halifaxensis HAW-EB4 5906387 YP_001676144.1 CDS Shal_3945 NC_010334.1 4810862 4812343 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4810862..4812343) Shewanella halifaxensis HAW-EB4 5906388 YP_001676145.1 CDS Shal_3946 NC_010334.1 4812527 4813399 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4812527..4813399 Shewanella halifaxensis HAW-EB4 5906445 YP_001676146.1 CDS Shal_3947 NC_010334.1 4813615 4814412 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0285 diguanylate cyclase; diguanylate cyclase 4813615..4814412 Shewanella halifaxensis HAW-EB4 5906446 YP_001676147.1 CDS Shal_3948 NC_010334.1 4814409 4815395 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_1773 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4814409..4815395) Shewanella halifaxensis HAW-EB4 5906638 YP_001676148.1 CDS Shal_3949 NC_010334.1 4815876 4816724 R PFAM: regulatory protein LysR; KEGG: son:SO_3297 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4815876..4816724) Shewanella halifaxensis HAW-EB4 5906639 YP_001676149.1 CDS Shal_3950 NC_010334.1 4816984 4818486 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO_3301 flavocytochrome c flavin subunit; flavocytochrome c 4816984..4818486 Shewanella halifaxensis HAW-EB4 5906705 YP_001676150.1 CDS Shal_3951 NC_010334.1 4818486 4818836 D KEGG: son:SO_3300 cytochrome c; cytochrome c 4818486..4818836 Shewanella halifaxensis HAW-EB4 5906706 YP_001676151.1 CDS Shal_3952 NC_010334.1 4818867 4820519 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO_3299 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase 4818867..4820519 Shewanella halifaxensis HAW-EB4 5906789 YP_001676152.1 CDS Shal_3953 NC_010334.1 4820618 4822171 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: vpa:VPA0596 putative methyl-accepting chemotaxis protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer complement(4820618..4822171) Shewanella halifaxensis HAW-EB4 5906790 YP_001676153.1 CDS Shal_3954 NC_010334.1 4822468 4823655 R KEGG: vha:VIBHAR_05569 hypothetical protein; hypothetical protein complement(4822468..4823655) Shewanella halifaxensis HAW-EB4 5906839 YP_001676154.1 CDS Shal_3955 NC_010334.1 4823749 4824417 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vha:VIBHAR_05570 hypothetical protein; two component transcriptional regulator 4823749..4824417 Shewanella halifaxensis HAW-EB4 5906840 YP_001676155.1 CDS Shal_3956 NC_010334.1 4824389 4825645 D PFAM: histidine kinase A domain protein; KEGG: vha:VIBHAR_05571 hypothetical protein; histidine kinase 4824389..4825645 Shewanella halifaxensis HAW-EB4 5906938 YP_001676156.1 CDS Shal_3957 NC_010334.1 4825989 4826825 D hypothetical protein 4825989..4826825 Shewanella halifaxensis HAW-EB4 5906939 YP_001676157.1 CDS Shal_3958 NC_010334.1 4827395 4827610 D KEGG: sbm:Shew185_1963 hypothetical protein; hypothetical protein 4827395..4827610 Shewanella halifaxensis HAW-EB4 5906966 YP_001676158.1 CDS Shal_3959 NC_010334.1 4827851 4829371 D KEGG: sbl:Sbal_4042 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4827851..4829371 Shewanella halifaxensis HAW-EB4 5906967 YP_001676159.1 CDS Shal_3960 NC_010334.1 4829821 4831350 D PFAM: EAL domain protein; KEGG: swi:Swit_2925 EAL domain protein; diguanylate phosphodiesterase 4829821..4831350 Shewanella halifaxensis HAW-EB4 5907043 YP_001676160.1 CDS Shal_3961 NC_010334.1 4831588 4832493 D PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_0282 phospholipid/glycerol acyltransferase; putative acyltransferase 4831588..4832493 Shewanella halifaxensis HAW-EB4 5907044 YP_001676161.1 CDS Shal_3962 NC_010334.1 4832501 4833451 D PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase 4832501..4833451 Shewanella halifaxensis HAW-EB4 5902752 YP_001676162.1 CDS Shal_3963 NC_010334.1 4833771 4834172 D hypothetical protein 4833771..4834172 Shewanella halifaxensis HAW-EB4 5902753 YP_001676163.1 CDS Shal_3964 NC_010334.1 4834257 4835348 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4834257..4835348) Shewanella halifaxensis HAW-EB4 5902709 YP_001676164.1 CDS Shal_3965 NC_010334.1 4835529 4836320 R PFAM: regulatory protein TetR; KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4835529..4836320) Shewanella halifaxensis HAW-EB4 5902710 YP_001676165.1 CDS Shal_3966 NC_010334.1 4836665 4838176 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: slo:Shew_0276 flavocytochrome c; flavocytochrome c 4836665..4838176 Shewanella halifaxensis HAW-EB4 5903242 YP_001676166.1 CDS Shal_3967 NC_010334.1 4838188 4838556 D KEGG: slo:Shew_0275 tetraheme cytochrome c, putative; tetraheme cytochrome c 4838188..4838556 Shewanella halifaxensis HAW-EB4 5903243 YP_001676167.1 CDS Shal_3968 NC_010334.1 4838604 4839743 D KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 4838604..4839743 Shewanella halifaxensis HAW-EB4 5906289 YP_001676168.1 CDS Shal_3969 NC_010334.1 4840016 4841089 D KEGG: son:SO_1411 hypothetical protein; hypothetical protein 4840016..4841089 Shewanella halifaxensis HAW-EB4 5906290 YP_001676169.1 CDS Shal_3970 NC_010334.1 4841266 4842009 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0272 cupin 2, conserved barrel domain protein; cupin 4841266..4842009 Shewanella halifaxensis HAW-EB4 5906342 YP_001676170.1 CDS Shal_3971 NC_010334.1 4842084 4843334 R KEGG: vpa:VP1356 hypothetical protein; hypothetical protein complement(4842084..4843334) Shewanella halifaxensis HAW-EB4 5906343 YP_001676171.1 CDS Shal_3972 NC_010334.1 4843331 4844632 R KEGG: vpa:VP1355 hypothetical protein; hypothetical protein complement(4843331..4844632) Shewanella halifaxensis HAW-EB4 5903234 YP_001676172.1 CDS Shal_3973 NC_010334.1 4844629 4845537 R PFAM: alpha/beta hydrolase fold; KEGG: ppr:PBPRB0984 hypothetical protein; alpha/beta hydrolase fold protein complement(4844629..4845537) Shewanella halifaxensis HAW-EB4 5903235 YP_001676173.1 CDS Shal_3974 NC_010334.1 4845569 4846474 R TIGRFAM: virulence-related outer membrane protein; KEGG: vco:VC0395_A1347 hypothetical protein; virulence-like outer membrane protein complement(4845569..4846474) Shewanella halifaxensis HAW-EB4 5903214 YP_001676174.1 CDS Shal_3975 NC_010334.1 4846732 4848114 R KEGG: slo:Shew_0271 phospholipase; phospholipase complement(4846732..4848114) Shewanella halifaxensis HAW-EB4 5903215 YP_001676175.1 CDS Shal_3976 NC_010334.1 4848318 4848938 D KEGG: slo:Shew_0270 hypothetical protein; hypothetical protein 4848318..4848938 Shewanella halifaxensis HAW-EB4 5903228 YP_001676176.1 CDS Shal_3977 NC_010334.1 4849078 4850544 R PFAM: Na+/H+ antiporter NhaC; KEGG: sbm:Shew185_4032 Na+ antiporter NhaC; Na+/H+ antiporter NhaC complement(4849078..4850544) Shewanella halifaxensis HAW-EB4 5903229 YP_001676177.1 CDS Shal_3978 NC_010334.1 4850725 4850928 D PFAM: protein of unknown function DUF904; KEGG: slo:Shew_0267 protein of unknown function DUF904; hypothetical protein 4850725..4850928 Shewanella halifaxensis HAW-EB4 5906503 YP_001676178.1 CDS Shal_3979 NC_010334.1 4851186 4851398 R PFAM: protein of unknown function DUF1107; KEGG: son:SO_0334 hypothetical protein; hypothetical protein complement(4851186..4851398) Shewanella halifaxensis HAW-EB4 5906504 YP_001676179.1 CDS Shal_3980 NC_010334.1 4851605 4852216 R PFAM: DSBA oxidoreductase; KEGG: slo:Shew_0265 DsbA oxidoreductase; DSBA oxidoreductase complement(4851605..4852216) Shewanella halifaxensis HAW-EB4 5906538 YP_001676180.1 CDS Shal_3981 NC_010334.1 4852342 4853370 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(4852342..4853370) Shewanella halifaxensis HAW-EB4 5906539 YP_001676181.1 CDS Shal_3982 NC_010334.1 4853706 4854014 R KEGG: shn:Shewana3_3840 hypothetical protein; hypothetical protein complement(4853706..4854014) Shewanella halifaxensis HAW-EB4 5906756 YP_001676182.1 CDS Shal_3983 NC_010334.1 4854064 4855515 R PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein complement(4854064..4855515) Shewanella halifaxensis HAW-EB4 5906757 YP_001676183.1 CDS Shal_3984 NC_010334.1 4855517 4855807 R KEGG: she:Shewmr4_3646 hypothetical protein; hypothetical protein complement(4855517..4855807) Shewanella halifaxensis HAW-EB4 5905907 YP_001676184.1 CDS Shal_3985 NC_010334.1 4855927 4856760 R KEGG: slo:Shew_0260 hypothetical protein; hypothetical protein complement(4855927..4856760) Shewanella halifaxensis HAW-EB4 5905908 YP_001676185.1 CDS Shal_3986 NC_010334.1 4857137 4857532 D KEGG: slo:Shew_0259 hypothetical protein; hypothetical protein 4857137..4857532 Shewanella halifaxensis HAW-EB4 5905893 YP_001676186.1 CDS Shal_3987 NC_010334.1 4857749 4858951 D PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: vha:VIBHAR_05599 hypothetical protein; response regulator receiver modulated serine phosphatase 4857749..4858951 Shewanella halifaxensis HAW-EB4 5905894 YP_001676187.1 CDS Shal_3988 NC_010334.1 4858965 4859297 D TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: kra:Krad_0483 anti-sigma-factor antagonist; anti-sigma-factor antagonist 4858965..4859297 Shewanella halifaxensis HAW-EB4 5905962 YP_001676188.1 CDS Shal_3989 NC_010334.1 4859311 4860504 D PFAM: Nucleotidyl transferase; KEGG: ava:Ava_3422 nucleotidyl transferase; nucleotidyl transferase 4859311..4860504 Shewanella halifaxensis HAW-EB4 5905963 YP_001676189.1 CDS Shal_3990 NC_010334.1 4860515 4860958 D KEGG: vpa:VPA1048 putative anti-sigma F factor antagonist; putative anti-sigma regulatory factor 4860515..4860958 Shewanella halifaxensis HAW-EB4 5905795 YP_001676190.1 CDS Shal_3991 NC_010334.1 4861042 4862898 D PFAM: glycosyl transferase family 2; KEGG: esa:ESA_01833 hypothetical protein; cellulose synthase 4861042..4862898 Shewanella halifaxensis HAW-EB4 5905796 YP_001676191.1 CDS Shal_3992 NC_010334.1 4862885 4864210 D KEGG: ava:Ava_1569 hypothetical protein; hypothetical protein 4862885..4864210 Shewanella halifaxensis HAW-EB4 5905609 YP_001676192.1 CDS Shal_3993 NC_010334.1 4864221 4865615 D KEGG: esa:ESA_01831 hypothetical protein; hypothetical protein 4864221..4865615 Shewanella halifaxensis HAW-EB4 5905610 YP_001676193.1 CDS Shal_3994 NC_010334.1 4865639 4867021 D KEGG: esa:ESA_01830 hypothetical protein; hypothetical protein 4865639..4867021 Shewanella halifaxensis HAW-EB4 5905549 YP_001676194.1 CDS Shal_3995 NC_010334.1 4867018 4867962 D hypothetical protein 4867018..4867962 Shewanella halifaxensis HAW-EB4 5905550 YP_001676195.1 CDS Shal_3996 NC_010334.1 4868119 4869396 D KEGG: ppd:Ppro_2693 glycosyl transferase, family 2; hypothetical protein 4868119..4869396 Shewanella halifaxensis HAW-EB4 5905605 YP_001676196.1 CDS Shal_3997 NC_010334.1 4869439 4869765 D KEGG: vfi:VFA1013 hypothetical protein; hypothetical protein 4869439..4869765 Shewanella halifaxensis HAW-EB4 5905606 YP_001676197.1 CDS Shal_3998 NC_010334.1 4869785 4871239 D KEGG: ana:alr3755 unknown protein; hypothetical protein 4869785..4871239 Shewanella halifaxensis HAW-EB4 5905615 YP_001676198.1 CDS Shal_3999 NC_010334.1 4871301 4872245 D KEGG: esa:ESA_01836 hypothetical protein; hypothetical protein 4871301..4872245 Shewanella halifaxensis HAW-EB4 5905616 YP_001676199.1 CDS Shal_4000 NC_010334.1 4872287 4872541 R hypothetical protein complement(4872287..4872541) Shewanella halifaxensis HAW-EB4 5905640 YP_001676200.1 CDS Shal_4001 NC_010334.1 4872544 4873584 R KEGG: ppr:PBPRB1154 hypothetical protein; hypothetical protein complement(4872544..4873584) Shewanella halifaxensis HAW-EB4 5905641 YP_001676201.1 CDS Shal_4002 NC_010334.1 4873587 4874078 R KEGG: ppr:PBPRB1153 hypothetical protein; hypothetical protein complement(4873587..4874078) Shewanella halifaxensis HAW-EB4 5904019 YP_001676202.1 CDS Shal_4003 NC_010334.1 4874181 4876838 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vfi:VFA1016 sensory transduction protein kinase; histidine kinase 4874181..4876838 Shewanella halifaxensis HAW-EB4 5904020 YP_001676203.1 CDS Shal_4004 NC_010334.1 4877020 4877925 D KEGG: slo:Shew_0258 hypothetical protein; hypothetical protein 4877020..4877925 Shewanella halifaxensis HAW-EB4 5902865 YP_001676204.1 CDS Shal_4005 NC_010334.1 4878087 4880144 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0257 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4878087..4880144 Shewanella halifaxensis HAW-EB4 5902866 YP_001676205.1 CDS Shal_4006 NC_010334.1 4880305 4880871 D KEGG: shn:Shewana3_3847 hypothetical protein; hypothetical protein 4880305..4880871 Shewanella halifaxensis HAW-EB4 5905467 YP_001676206.1 CDS Shal_4007 NC_010334.1 4881033 4881617 R KEGG: slo:Shew_0246 hypothetical protein; hypothetical protein complement(4881033..4881617) Shewanella halifaxensis HAW-EB4 5905468 YP_001676207.1 CDS Shal_4008 NC_010334.1 4881874 4884909 R PFAM: molydopterin dinucleotide-binding region; KEGG: slo:Shew_0245 molybdopterin dinucleotide-binding region; molydopterin dinucleotide-binding region complement(4881874..4884909) Shewanella halifaxensis HAW-EB4 5905395 YP_001676208.1 CDS Shal_4009 NC_010334.1 4884919 4885614 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0244 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(4884919..4885614) Shewanella halifaxensis HAW-EB4 5905396 YP_001676209.1 CDS Shal_4010 NC_010334.1 4886169 4887134 D PFAM: regulatory protein LysR; KEGG: slo:Shew_0243 transcriptional regulator, LysR family; LysR family transcriptional regulator 4886169..4887134 Shewanella halifaxensis HAW-EB4 5905315 YP_001676210.1 CDS Shal_4011 NC_010334.1 4887338 4889551 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: slo:Shew_0242 molybdopterin dinucleotide-binding region; molybdopterin oxidoreductase 4887338..4889551 Shewanella halifaxensis HAW-EB4 5905316 YP_001676211.1 CDS Shal_4012 NC_010334.1 4889562 4890107 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0241 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4889562..4890107 Shewanella halifaxensis HAW-EB4 5905249 YP_001676212.1 CDS Shal_4013 NC_010334.1 4890107 4890697 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: slo:Shew_0240 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4890107..4890697 Shewanella halifaxensis HAW-EB4 5905250 YP_001676213.1 CDS Shal_4014 NC_010334.1 4890808 4891773 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: slo:Shew_0239 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4890808..4891773 Shewanella halifaxensis HAW-EB4 5905163 YP_001676214.1 CDS Shal_4015 NC_010334.1 4891926 4892990 D PFAM: porin Gram-negative type; KEGG: slo:Shew_0238 porin, gram-negative type; porin 4891926..4892990 Shewanella halifaxensis HAW-EB4 5905164 YP_001676215.1 CDS Shal_4016 NC_010334.1 4893109 4895010 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sbm:Shew185_2544 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4893109..4895010 Shewanella halifaxensis HAW-EB4 5905065 YP_001676216.1 CDS Shal_4017 NC_010334.1 4895147 4896076 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: vpa:VP1745 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4895147..4896076 Shewanella halifaxensis HAW-EB4 5905066 YP_001676217.1 CDS Shal_4018 NC_010334.1 4896452 4897414 D PFAM: regulatory protein LysR; KEGG: she:Shewmr4_3657 transcriptional regulator, LysR family; LysR family transcriptional regulator 4896452..4897414 Shewanella halifaxensis HAW-EB4 5904968 YP_001676218.1 CDS Shal_4019 NC_010334.1 4897722 4899158 D PFAM: Disulphide bond formation protein DsbB; KEGG: shm:Shewmr7_0287 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 4897722..4899158 Shewanella halifaxensis HAW-EB4 5904969 YP_001676219.1 CDS Shal_4020 NC_010334.1 4899253 4901454 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_3659 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 4899253..4901454 Shewanella halifaxensis HAW-EB4 5904946 YP_001676220.1 CDS Shal_4021 NC_010334.1 4901467 4902015 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_3660 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4901467..4902015 Shewanella halifaxensis HAW-EB4 5904947 YP_001676221.1 CDS Shal_4022 NC_010334.1 4902012 4902644 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_0284 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4902012..4902644 Shewanella halifaxensis HAW-EB4 5902946 YP_001676222.1 CDS Shal_4023 NC_010334.1 4902663 4903616 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_3662 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 4902663..4903616 Shewanella halifaxensis HAW-EB4 5902947 YP_001676223.1 CDS Shal_4024 NC_010334.1 4903724 4904818 D KEGG: slo:Shew_0238 porin, gram-negative type; porin 4903724..4904818 Shewanella halifaxensis HAW-EB4 5904913 YP_001676224.1 CDS Shal_4025 NC_010334.1 4904860 4905201 R PFAM: protein of unknown function DUF1232; KEGG: slo:Shew_0234 protein of unknown function DUF1232; hypothetical protein complement(4904860..4905201) Shewanella halifaxensis HAW-EB4 5904914 YP_001676225.1 CDS Shal_4026 NC_010334.1 4905346 4907679 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: slo:Shew_0233 radical SAM N-terminal domain protein; hypothetical protein complement(4905346..4907679) Shewanella halifaxensis HAW-EB4 5904911 YP_001676226.1 CDS Shal_4027 NC_010334.1 4907916 4908323 R KEGG: shn:Shewana3_3875 conserved hypothetical protein; hypothetical protein complement(4907916..4908323) Shewanella halifaxensis HAW-EB4 5904912 YP_001676227.1 CDS Shal_4028 NC_010334.1 4908547 4909767 D PFAM: protein of unknown function DUF1212; KEGG: slo:Shew_0231 protein of unknown function DUF1212; hypothetical protein 4908547..4909767 Shewanella halifaxensis HAW-EB4 5902760 YP_001676228.1 CDS Shal_4029 NC_010334.1 4909937 4911583 D KEGG: slo:Shew_0230 hypothetical protein; hypothetical protein 4909937..4911583 Shewanella halifaxensis HAW-EB4 5902761 YP_001676229.1 CDS Shal_4030 NC_010334.1 4911709 4912128 R KEGG: pat:Patl_2820 hypothetical protein; hypothetical protein complement(4911709..4912128) Shewanella halifaxensis HAW-EB4 5903258 YP_001676230.1 CDS Shal_4031 NC_010334.1 4912253 4912579 R PFAM: small multidrug resistance protein; KEGG: sfr:Sfri_3425 small multidrug resistance protein; small multidrug resistance protein complement(4912253..4912579) Shewanella halifaxensis HAW-EB4 5903259 YP_001676231.1 CDS Shal_4032 NC_010334.1 4912818 4913657 R KEGG: sfr:Sfri_3426 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(4912818..4913657) Shewanella halifaxensis HAW-EB4 5902958 YP_001676232.1 CDS Shal_4033 NC_010334.1 4913813 4914943 R TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO_A0161 zinc-binding dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase complement(4913813..4914943) Shewanella halifaxensis HAW-EB4 5902959 YP_001676233.1 CDS Shal_4034 NC_010334.1 4915181 4915447 R TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger DksA/TraR C4-type; KEGG: ilo:IL0756 DnaK suppressor protein; hypothetical protein complement(4915181..4915447) Shewanella halifaxensis HAW-EB4 5902634 YP_001676234.1 CDS Shal_4035 NC_010334.1 4916057 4916653 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(4916057..4916653) Shewanella halifaxensis HAW-EB4 5902635 YP_001676235.1 CDS Shal_4036 NC_010334.1 4916701 4917852 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO_A0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(4916701..4917852) Shewanella halifaxensis HAW-EB4 5903226 YP_001676236.1 CDS Shal_4037 NC_010334.1 4918177 4919052 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_3440 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 4918177..4919052 Shewanella halifaxensis HAW-EB4 5903227 YP_001676237.1 CDS Shal_4038 NC_010334.1 4919336 4920544 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF2364 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4919336..4920544 Shewanella halifaxensis HAW-EB4 5902727 YP_001676238.1 CDS Shal_4039 NC_010334.1 4921006 4922097 D PFAM: Radical SAM domain protein; KEGG: pmu:PM0600 putative arylsulfatase regulator; radical SAM domain-containing protein 4921006..4922097 Shewanella halifaxensis HAW-EB4 5902728 YP_001676239.1 CDS Shal_4040 NC_010334.1 4922116 4922886 D KEGG: ent:Ent638_1505 protein of unknown function DUF1384; hypothetical protein 4922116..4922886 Shewanella halifaxensis HAW-EB4 5903135 YP_001676240.1 CDS Shal_4041 NC_010334.1 4922899 4924377 D PFAM: sulfatase; KEGG: stm:STM0035 putative arylsulfatase; sulfatase 4922899..4924377 Shewanella halifaxensis HAW-EB4 5903136 YP_001676241.1 CDS Shal_4042 NC_010334.1 4924847 4925851 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ppr:PBPRB1790 hypothetical ABC transporter, substrate binding protein; substrate-binding region of ABC-type glycine betaine transport system 4924847..4925851 Shewanella halifaxensis HAW-EB4 5903055 YP_001676242.1 CDS Shal_4043 NC_010334.1 4925936 4926835 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vha:VIBHAR_06563 hypothetical protein; binding-protein-dependent transport system inner membrane protein 4925936..4926835 Shewanella halifaxensis HAW-EB4 5903056 YP_001676243.1 CDS Shal_4044 NC_010334.1 4926828 4928102 D KEGG: vha:VIBHAR_06564 hypothetical protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 4926828..4928102 Shewanella halifaxensis HAW-EB4 5902618 YP_001676244.1 CDS Shal_4045 NC_010334.1 4928102 4929352 D KEGG: slo:Shew_3355 hypothetical protein; hypothetical protein 4928102..4929352 Shewanella halifaxensis HAW-EB4 5902619 YP_001676245.1 CDS Shal_4046 NC_010334.1 4929715 4930425 D KEGG: sma:SAV4441 hypothetical protein; hypothetical protein 4929715..4930425 Shewanella halifaxensis HAW-EB4 5902942 YP_001676246.1 CDS Shal_4047 NC_010334.1 4930941 4931324 R KEGG: spc:Sputcn32_3933 hypothetical protein; hypothetical protein complement(4930941..4931324) Shewanella halifaxensis HAW-EB4 5902943 YP_001676247.1 CDS Shal_4048 NC_010334.1 4931439 4931756 D KEGG: spc:Sputcn32_3932 hypothetical protein; hypothetical protein 4931439..4931756 Shewanella halifaxensis HAW-EB4 5903039 YP_001676248.1 CDS Shal_4049 NC_010334.1 4932415 4932630 D PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0810 predicted transcriptional regulator; phage transcriptional regulator AlpA 4932415..4932630 Shewanella halifaxensis HAW-EB4 5903040 YP_001676249.1 CDS Shal_4050 NC_010334.1 4932671 4933153 R KEGG: slo:Shew_1265 hypothetical protein; hypothetical protein complement(4932671..4933153) Shewanella halifaxensis HAW-EB4 5903275 YP_001676250.1 CDS Shal_4051 NC_010334.1 4933858 4934694 R hypothetical protein complement(4933858..4934694) Shewanella halifaxensis HAW-EB4 5903276 YP_001676251.1 CDS Shal_4052 NC_010334.1 4935054 4936508 R KEGG: neu:NE0256 hypothetical protein; hypothetical protein complement(4935054..4936508) Shewanella halifaxensis HAW-EB4 5902766 YP_001676252.1 CDS Shal_4053 NC_010334.1 4937068 4937454 D KEGG: eba:p1D12 weak: Alr7543 protein; hypothetical protein 4937068..4937454 Shewanella halifaxensis HAW-EB4 5902767 YP_001676253.1 CDS Shal_4054 NC_010334.1 4938215 4938619 D hypothetical protein 4938215..4938619 Shewanella halifaxensis HAW-EB4 5903047 YP_001676254.1 CDS Shal_4055 NC_010334.1 4939211 4940401 R hypothetical protein complement(4939211..4940401) Shewanella halifaxensis HAW-EB4 5903048 YP_001676255.1 CDS Shal_4056 NC_010334.1 4940481 4941473 R hypothetical protein complement(4940481..4941473) Shewanella halifaxensis HAW-EB4 5902911 YP_001676256.1 CDS Shal_4057 NC_010334.1 4941735 4942346 D hypothetical protein 4941735..4942346 Shewanella halifaxensis HAW-EB4 5902912 YP_001676257.1 CDS Shal_4058 NC_010334.1 4942391 4943686 R KEGG: pcr:Pcryo_1614 hypothetical protein; hypothetical protein complement(4942391..4943686) Shewanella halifaxensis HAW-EB4 5902690 YP_001676258.1 CDS Shal_4059 NC_010334.1 4943894 4944835 D PFAM: integrase family protein; KEGG: son:SO_3884 site-specific recombinase, phage integrase family; integrase family protein 4943894..4944835 Shewanella halifaxensis HAW-EB4 5902691 YP_001676259.1 CDS Shal_4060 NC_010334.1 4944828 4946882 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pat:Patl_0729 AAA ATPase, central region; ATPase central domain-containing protein 4944828..4946882 Shewanella halifaxensis HAW-EB4 5903220 YP_001676260.1 CDS Shal_4061 NC_010334.1 4946984 4947439 D KEGG: sbl:Sbal_3560 hypothetical protein; hypothetical protein 4946984..4947439 Shewanella halifaxensis HAW-EB4 5903221 YP_001676261.1 CDS Shal_4062 NC_010334.1 4947701 4947970 D KEGG: she:Shewmr4_3221 hypothetical protein; hypothetical protein 4947701..4947970 Shewanella halifaxensis HAW-EB4 5902729 YP_001676262.1 CDS Shal_4063 NC_010334.1 4948054 4948410 D KEGG: she:Shewmr4_3199 hypothetical protein; hypothetical protein 4948054..4948410 Shewanella halifaxensis HAW-EB4 5902730 YP_001676263.1 CDS Shal_4064 NC_010334.1 4948538 4950130 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: par:Psyc_0401 probable C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 4948538..4950130 Shewanella halifaxensis HAW-EB4 5903182 YP_001676264.1 CDS Shal_4065 NC_010334.1 4950364 4951866 R KEGG: par:Psyc_0402 hypothetical protein; hypothetical protein complement(4950364..4951866) Shewanella halifaxensis HAW-EB4 5903183 YP_001676265.1 CDS Shal_4066 NC_010334.1 4951931 4953694 R PFAM: integrase family protein; KEGG: pat:Patl_0725 phage integrase; integrase family protein complement(4951931..4953694) Shewanella halifaxensis HAW-EB4 5902701 YP_001676266.1 CDS Shal_4067 NC_010334.1 4954297 4955139 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: slo:Shew_0228 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4954297..4955139) Shewanella halifaxensis HAW-EB4 5903034 YP_001676267.1 CDS Shal_4068 NC_010334.1 4955242 4957116 D PFAM: LppC family lipoprotein; KEGG: slo:Shew_0227 LppC family lipoprotein; LppC family lipoprotein 4955242..4957116 Shewanella halifaxensis HAW-EB4 5902803 YP_001676268.1 CDS Shal_4069 NC_010334.1 4957227 4957568 D PFAM: protein of unknown function UPF0102; KEGG: sbm:Shew185_4070 protein of unknown function UPF0102; hypothetical protein 4957227..4957568 Shewanella halifaxensis HAW-EB4 5902804 YP_001676269.1 CDS Shal_4070 NC_010334.1 4957633 4958226 D TIGRFAM: phosphoheptose isomerase; KEGG: shw:Sputw3181_3836 phosphoheptose isomerase; phosphoheptose isomerase 4957633..4958226 Shewanella halifaxensis HAW-EB4 5903171 YP_001676270.1 CDS Shal_4071 NC_010334.1 4958223 4958792 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: slo:Shew_0224 transport-associated; transport-associated 4958223..4958792 Shewanella halifaxensis HAW-EB4 5903172 YP_001676271.1 CDS Shal_4072 NC_010334.1 4958825 4959694 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfr:Sfri_0385 protein of unknown function DUF6, transmembrane; hypothetical protein complement(4958825..4959694) Shewanella halifaxensis HAW-EB4 5903398 YP_001676272.1 CDS Shal_4073 NC_010334.1 4959854 4960723 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_0384 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 4959854..4960723 Shewanella halifaxensis HAW-EB4 5903399 YP_001676273.1 CDS Shal_4074 NC_010334.1 4960801 4961811 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4960801..4961811) Shewanella halifaxensis HAW-EB4 5902735 YP_001676274.1 CDS Shal_4075 NC_010334.1 4961817 4962515 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_3841 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(4961817..4962515) Shewanella halifaxensis HAW-EB4 5902736 YP_001676275.1 CDS Shal_4076 NC_010334.1 4962519 4963193 R PFAM: ribulose-phosphate 3-epimerase; KEGG: slo:Shew_0219 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(4962519..4963193) Shewanella halifaxensis HAW-EB4 5902717 YP_001676276.1 CDS Shal_4077 NC_010334.1 4963409 4963747 D KEGG: slo:Shew_0218 hypothetical protein; hypothetical protein 4963409..4963747 Shewanella halifaxensis HAW-EB4 5902718 YP_001676277.1 CDS Shal_4078 NC_010334.1 4963756 4963941 D KEGG: spc:Sputcn32_3702 hypothetical protein; hypothetical protein 4963756..4963941 Shewanella halifaxensis HAW-EB4 5902692 YP_001676278.1 CDS Shal_4079 NC_010334.1 4963978 4964817 R KEGG: slo:Shew_0216 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase complement(4963978..4964817) Shewanella halifaxensis HAW-EB4 5902693 YP_001676279.1 CDS Shal_4080 NC_010334.1 4964872 4966293 R PFAM: Sporulation domain protein; KEGG: slo:Shew_0215 sporulation domain protein; sporulation domain-containing protein complement(4964872..4966293) Shewanella halifaxensis HAW-EB4 5903083 YP_001676280.1 CDS aroB NC_010334.1 4966454 4967533 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(4966454..4967533) Shewanella halifaxensis HAW-EB4 5903084 YP_001676281.1 CDS aroK NC_010334.1 4967537 4968052 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(4967537..4968052) Shewanella halifaxensis HAW-EB4 5903053 YP_001676282.1 CDS Shal_4083 NC_010334.1 4968267 4970333 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: slo:Shew_0212 type IV pilus secretin PilQ; type IV pilus secretin PilQ complement(4968267..4970333) Shewanella halifaxensis HAW-EB4 5903054 YP_001676283.1 CDS Shal_4084 NC_010334.1 4970340 4970858 R PFAM: Pilus assembly protein PilP; KEGG: sbm:Shew185_4086 pilus assembly protein PilP; pilus assembly protein PilP complement(4970340..4970858) Shewanella halifaxensis HAW-EB4 5902831 YP_001676284.1 CDS Shal_4085 NC_010334.1 4970855 4971475 R PFAM: Pilus assembly protein PilO; KEGG: slo:Shew_0210 pilus assembly protein, PilO; pilus assembly protein PilO complement(4970855..4971475) Shewanella halifaxensis HAW-EB4 5902832 YP_001676285.1 CDS Shal_4086 NC_010334.1 4971472 4972053 R PFAM: Fimbrial assembly family protein; KEGG: slo:Shew_0209 fimbrial assembly family protein; fimbrial assembly family protein complement(4971472..4972053) Shewanella halifaxensis HAW-EB4 5903141 YP_001676286.1 CDS Shal_4087 NC_010334.1 4972041 4973120 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: slo:Shew_0208 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(4972041..4973120) Shewanella halifaxensis HAW-EB4 5903142 YP_001676287.1 CDS Shal_4088 NC_010334.1 4973553 4976105 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sbm:Shew185_4090 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 4973553..4976105 Shewanella halifaxensis HAW-EB4 5902721 YP_001676288.1 CDS Shal_4089 NC_010334.1 4976271 4977638 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(4976271..4977638) Shewanella halifaxensis HAW-EB4 5902722 YP_001676289.1 CDS Shal_4090 NC_010334.1 4977749 4978987 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(4977749..4978987) Shewanella halifaxensis HAW-EB4 5902889 YP_001676290.1 CDS Shal_4091 NC_010334.1 4979057 4979962 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(4979057..4979962) Shewanella halifaxensis HAW-EB4 5902890 YP_001676291.1 CDS Shal_4092 NC_010334.1 4979978 4980805 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(4979978..4980805) Shewanella halifaxensis HAW-EB4 5903379 YP_001676292.1 CDS argC NC_010334.1 4980818 4981810 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4980818..4981810) Shewanella halifaxensis HAW-EB4 5903380 YP_001676293.1 CDS Shal_4094 NC_010334.1 4982086 4983237 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4982086..4983237 Shewanella halifaxensis HAW-EB4 5904234 YP_001676294.1 CDS Shal_4095 NC_010334.1 4983406 4986042 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4983406..4986042 Shewanella halifaxensis HAW-EB4 5904235 YP_001676295.1 CDS Shal_4096 NC_010334.1 4986042 4986584 D PFAM: protein of unknown function DUF1439; KEGG: slo:Shew_0199 protein of unknown function DUF1439; hypothetical protein 4986042..4986584 Shewanella halifaxensis HAW-EB4 5904236 YP_001676296.1 CDS Shal_4097 NC_010334.1 4986662 4987936 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: shw:Sputw3181_3863 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(4986662..4987936) Shewanella halifaxensis HAW-EB4 5904237 YP_001676297.1 CDS Shal_4098 NC_010334.1 5001080 5001676 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0196 redoxin domain protein; redoxin domain-containing protein complement(5001080..5001676) Shewanella halifaxensis HAW-EB4 5903010 YP_001676298.1 CDS Shal_4099 NC_010334.1 5001673 5002140 R PFAM: cytochrome C biogenesis protein; KEGG: slo:Shew_0195 cytochrome c biogenesis protein; cytochrome C biogenesis protein complement(5001673..5002140) Shewanella halifaxensis HAW-EB4 5902809 YP_001676299.1 CDS Shal_4100 NC_010334.1 5002152 5002706 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sbm:Shew185_0232 periplasmic protein thiol--disulphide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(5002152..5002706) Shewanella halifaxensis HAW-EB4 5902789 YP_001676300.1 CDS Shal_4101 NC_010334.1 5002723 5004702 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(5002723..5004702) Shewanella halifaxensis HAW-EB4 5902790 YP_001676301.1 CDS Shal_4102 NC_010334.1 5005134 5006405 D SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0192 TPR repeat-containing protein; tetratricopeptide domain-containing protein 5005134..5006405 Shewanella halifaxensis HAW-EB4 5902797 YP_001676302.1 CDS Shal_4103 NC_010334.1 5006613 5006906 R PFAM: cytochrome c class I; KEGG: sfr:Sfri_0180 cytochrome c, class I; cytochrome c class I complement(5006613..5006906) Shewanella halifaxensis HAW-EB4 5902798 YP_001676303.1 CDS Shal_4104 NC_010334.1 5007227 5007877 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 5007227..5007877 Shewanella halifaxensis HAW-EB4 5902925 YP_001676304.1 CDS Shal_4105 NC_010334.1 5007887 5008573 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: sbm:Shew185_0227 heme exporter protein CcmB; heme exporter protein CcmB 5007887..5008573 Shewanella halifaxensis HAW-EB4 5902926 YP_001676305.1 CDS Shal_4106 NC_010334.1 5008575 5009321 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: slo:Shew_0188 heme exporter protein CcmC; heme exporter protein CcmC 5008575..5009321 Shewanella halifaxensis HAW-EB4 5903103 YP_001676306.1 CDS Shal_4107 NC_010334.1 5009321 5009518 D PFAM: Heme exporter protein D (CcmD); KEGG: son:SO_0260 heme exporter protein CcmD; Heme exporter protein CcmD 5009321..5009518 Shewanella halifaxensis HAW-EB4 5903104 YP_001676307.1 CDS Shal_4108 NC_010334.1 5009518 5010006 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 5009518..5010006 Shewanella halifaxensis HAW-EB4 5902666 YP_001676308.1 CDS rplQ NC_010334.1 5011467 5011859 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(5011467..5011859) Shewanella halifaxensis HAW-EB4 5902667 YP_001676309.1 CDS Shal_4110 NC_010334.1 5011899 5012888 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(5011899..5012888) Shewanella halifaxensis HAW-EB4 5902810 YP_001676310.1 CDS rpsD NC_010334.1 5012913 5013533 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(5012913..5013533) Shewanella halifaxensis HAW-EB4 5902811 YP_001676311.1 CDS Shal_4112 NC_010334.1 5013569 5013961 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(5013569..5013961) Shewanella halifaxensis HAW-EB4 5902636 YP_001676312.1 CDS rpsM NC_010334.1 5013976 5014332 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(5013976..5014332) Shewanella halifaxensis HAW-EB4 5902637 YP_001676313.1 CDS secY NC_010334.1 5014583 5015923 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(5014583..5015923) Shewanella halifaxensis HAW-EB4 5902948 YP_001676314.1 CDS rplO NC_010334.1 5015931 5016365 R late assembly protein; 50S ribosomal protein L15 complement(5015931..5016365) Shewanella halifaxensis HAW-EB4 5902949 YP_001676315.1 CDS rpmD NC_010334.1 5016367 5016552 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(5016367..5016552) Shewanella halifaxensis HAW-EB4 5902927 YP_001676316.1 CDS rpsE NC_010334.1 5016559 5017065 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(5016559..5017065) Shewanella halifaxensis HAW-EB4 5902928 YP_001676317.1 CDS rplR NC_010334.1 5017079 5017429 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(5017079..5017429) Shewanella halifaxensis HAW-EB4 5903061 YP_001676318.1 CDS rplF NC_010334.1 5017441 5017971 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(5017441..5017971) Shewanella halifaxensis HAW-EB4 5903062 YP_001676319.1 CDS rpsH NC_010334.1 5017982 5018374 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(5017982..5018374) Shewanella halifaxensis HAW-EB4 5902768 YP_001676320.1 CDS rpsN NC_010334.1 5018399 5018704 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(5018399..5018704) Shewanella halifaxensis HAW-EB4 5902769 YP_001676321.1 CDS rplE NC_010334.1 5018715 5019254 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(5018715..5019254) Shewanella halifaxensis HAW-EB4 5903216 YP_001676322.1 CDS rplX NC_010334.1 5019268 5019582 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(5019268..5019582) Shewanella halifaxensis HAW-EB4 5903217 YP_001676323.1 CDS rplN NC_010334.1 5019594 5019962 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(5019594..5019962) Shewanella halifaxensis HAW-EB4 5902780 YP_001676324.1 CDS rpsQ NC_010334.1 5020143 5020391 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(5020143..5020391) Shewanella halifaxensis HAW-EB4 5902781 YP_001676325.1 CDS Shal_4126 NC_010334.1 5020391 5020582 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(5020391..5020582) Shewanella halifaxensis HAW-EB4 5903237 YP_001676326.1 CDS rplP NC_010334.1 5020582 5020992 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(5020582..5020992) Shewanella halifaxensis HAW-EB4 5903238 YP_001676327.1 CDS rpsC NC_010334.1 5021004 5021693 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(5021004..5021693) Shewanella halifaxensis HAW-EB4 5902678 YP_001676328.1 CDS rplV NC_010334.1 5021703 5022035 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(5021703..5022035) Shewanella halifaxensis HAW-EB4 5902679 YP_001676329.1 CDS Shal_4130 NC_010334.1 5022051 5022287 R TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: slo:Shew_0162 ribosomal protein S19; 30S ribosomal protein S19 complement(5022051..5022287) Shewanella halifaxensis HAW-EB4 5903660 YP_001676330.1 CDS rplB NC_010334.1 5022341 5023168 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(5022341..5023168) Shewanella halifaxensis HAW-EB4 5903661 YP_001676331.1 CDS rplW NC_010334.1 5023186 5023488 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(5023186..5023488) Shewanella halifaxensis HAW-EB4 5902600 YP_001676332.1 CDS rplD NC_010334.1 5023485 5024090 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(5023485..5024090) Shewanella halifaxensis HAW-EB4 5902601 YP_001676333.1 CDS rplC NC_010334.1 5024108 5024746 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(5024108..5024746) Shewanella halifaxensis HAW-EB4 5902972 YP_001676334.1 CDS rpsJ NC_010334.1 5024771 5025082 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(5024771..5025082) Shewanella halifaxensis HAW-EB4 5902973 YP_001676335.1 CDS Shal_4136 NC_010334.1 5025440 5026624 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(5025440..5026624) Shewanella halifaxensis HAW-EB4 5902614 YP_001676336.1 CDS Shal_4137 NC_010334.1 5026707 5028803 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(5026707..5028803) Shewanella halifaxensis HAW-EB4 5902615 YP_001676337.1 CDS Shal_4138 NC_010334.1 5028879 5029349 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(5028879..5029349) Shewanella halifaxensis HAW-EB4 5904480 YP_001676338.1 CDS rpsL NC_010334.1 5029430 5029804 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(5029430..5029804) Shewanella halifaxensis HAW-EB4 5904481 YP_001676339.1 CDS Shal_4140 NC_010334.1 5029994 5034208 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(5029994..5034208) Shewanella halifaxensis HAW-EB4 5903321 YP_001676340.1 CDS rpoB NC_010334.1 5034289 5038239 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(5034289..5038239) Shewanella halifaxensis HAW-EB4 5903322 YP_001676341.1 CDS Shal_4142 NC_010334.1 5038561 5038926 R TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: sfr:Sfri_0140 ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(5038561..5038926) Shewanella halifaxensis HAW-EB4 5902921 YP_001676342.1 CDS rplJ NC_010334.1 5038983 5039480 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(5038983..5039480) Shewanella halifaxensis HAW-EB4 5902922 YP_001676343.1 CDS rplA NC_010334.1 5039748 5040449 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(5039748..5040449) Shewanella halifaxensis HAW-EB4 5902608 YP_001676344.1 CDS rplK NC_010334.1 5040454 5040882 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(5040454..5040882) Shewanella halifaxensis HAW-EB4 5902609 YP_001676345.1 CDS Shal_4146 NC_010334.1 5041008 5041559 R TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: slo:Shew_0146 NusG antitermination factor; NusG antitermination factor complement(5041008..5041559) Shewanella halifaxensis HAW-EB4 5906858 YP_001676346.1 CDS secE NC_010334.1 5041569 5041940 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(5041569..5041940) Shewanella halifaxensis HAW-EB4 5906859 YP_001676347.1 CDS Shal_4148 NC_010334.1 5042228 5043412 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(5042228..5043412) Shewanella halifaxensis HAW-EB4 5906762 YP_001676348.1 CDS Shal_4149 NC_010334.1 5044122 5045072 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 5044122..5045072 Shewanella halifaxensis HAW-EB4 5906668 YP_001676349.1 CDS Shal_4150 NC_010334.1 5045117 5046079 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(5045117..5046079) Shewanella halifaxensis HAW-EB4 5906593 YP_001676350.1 CDS murB NC_010334.1 5046081 5047106 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(5046081..5047106) Shewanella halifaxensis HAW-EB4 5906594 YP_001676351.1 CDS Shal_4152 NC_010334.1 5053780 5054241 D PFAM: RNP-1 like RNA-binding protein; KEGG: slo:Shew_0140 RNP-1-like RNA-binding protein; RNP-1 like RNA-binding protein 5053780..5054241 Shewanella halifaxensis HAW-EB4 5906364 YP_001676352.1 CDS Shal_4153 NC_010334.1 5054252 5055052 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(5054252..5055052) Shewanella halifaxensis HAW-EB4 5906259 YP_001676353.1 CDS Shal_4154 NC_010334.1 5055249 5056346 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5055249..5056346 Shewanella halifaxensis HAW-EB4 5906196 YP_001676354.1 CDS Shal_4155 NC_010334.1 5056491 5057168 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(5056491..5057168) Shewanella halifaxensis HAW-EB4 5906197 YP_001676355.1 CDS Shal_4156 NC_010334.1 5057246 5058352 D PFAM: fatty acid desaturase; KEGG: shw:Sputw3181_3679 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase 5057246..5058352 Shewanella halifaxensis HAW-EB4 5906012 YP_001676356.1 CDS Shal_4157 NC_010334.1 5058505 5059584 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 5058505..5059584 Shewanella halifaxensis HAW-EB4 5906013 YP_001676357.1 CDS Shal_4158 NC_010334.1 5059584 5060681 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 5059584..5060681 Shewanella halifaxensis HAW-EB4 5905291 YP_001676358.1 CDS Shal_4159 NC_010334.1 5060689 5062374 R PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_0173 phospholipid/glycerol acyltransferase; major facilitator transporter complement(5060689..5062374) Shewanella halifaxensis HAW-EB4 5905292 YP_001676359.1 CDS Shal_4160 NC_010334.1 5062380 5062841 R PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_0131 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5062380..5062841) Shewanella halifaxensis HAW-EB4 5904799 YP_001676360.1 CDS Shal_4161 NC_010334.1 5062834 5063646 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sbl:Sbal_4187 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(5062834..5063646) Shewanella halifaxensis HAW-EB4 5904800 YP_001676361.1 CDS nudE NC_010334.1 5063690 5064250 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(5063690..5064250) Shewanella halifaxensis HAW-EB4 5904685 YP_001676362.1 CDS Shal_4163 NC_010334.1 5064343 5065011 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: spc:Sputcn32_3556 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 5064343..5065011 Shewanella halifaxensis HAW-EB4 5904686 YP_001676363.1 CDS Shal_4164 NC_010334.1 5065067 5065810 R PFAM: type II secretion system protein N; KEGG: slo:Shew_3609 type II secretion system protein N; type II secretion system protein N complement(5065067..5065810) Shewanella halifaxensis HAW-EB4 5903460 YP_001676364.1 CDS Shal_4165 NC_010334.1 5065835 5066311 R PFAM: General secretion pathway M protein; KEGG: slo:Shew_3610 general secretion pathway M protein; general secretion pathway M protein complement(5065835..5066311) Shewanella halifaxensis HAW-EB4 5903461 YP_001676365.1 CDS Shal_4166 NC_010334.1 5066313 5067506 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: shm:Shewmr7_0159 general secretion pathway protein L; general secretion pathway protein L complement(5066313..5067506) Shewanella halifaxensis HAW-EB4 5904862 YP_001676366.1 CDS Shal_4167 NC_010334.1 5067553 5068533 R PFAM: General secretion pathway protein K; KEGG: slo:Shew_3612 general secretion pathway protein K; general secretion pathway protein K complement(5067553..5068533) Shewanella halifaxensis HAW-EB4 5904863 YP_001676367.1 CDS Shal_4168 NC_010334.1 5068536 5069279 R TIGRFAM: general secretion pathway protein J; KEGG: shn:Shewana3_0157 general secretion pathway protein J; general secretion pathway protein J complement(5068536..5069279) Shewanella halifaxensis HAW-EB4 5906785 YP_001676368.1 CDS Shal_4169 NC_010334.1 5069260 5069637 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: slo:Shew_3614 general secretion pathway protein I; general secretion pathway protein I complement(5069260..5069637) Shewanella halifaxensis HAW-EB4 5906786 YP_001676369.1 CDS Shal_4170 NC_010334.1 5069634 5070266 R TIGRFAM: general secretion pathway protein H; KEGG: slo:Shew_3615 general secretion pathway protein H; general secretion pathway protein H complement(5069634..5070266) Shewanella halifaxensis HAW-EB4 5905037 YP_001676370.1 CDS Shal_4171 NC_010334.1 5070229 5070663 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: slo:Shew_3616 general secretion pathway protein G; general secretion pathway protein G complement(5070229..5070663) Shewanella halifaxensis HAW-EB4 5905038 YP_001676371.1 CDS Shal_4172 NC_010334.1 5070730 5071953 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: slo:Shew_3617 general secretion pathway protein F; general secretion pathway protein F complement(5070730..5071953) Shewanella halifaxensis HAW-EB4 5904887 YP_001676372.1 CDS Shal_4173 NC_010334.1 5071956 5073527 R KEGG: slo:Shew_3618 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(5071956..5073527) Shewanella halifaxensis HAW-EB4 5904888 YP_001676373.1 CDS Shal_4174 NC_010334.1 5073520 5075682 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: slo:Shew_3619 general secretion pathway protein D; general secretion pathway protein D complement(5073520..5075682) Shewanella halifaxensis HAW-EB4 5904559 YP_001676374.1 CDS Shal_4175 NC_010334.1 5075764 5076681 R TIGRFAM: general secretion pathway protein C; KEGG: slo:Shew_3620 general secretion pathway protein C; general secretion pathway protein C complement(5075764..5076681) Shewanella halifaxensis HAW-EB4 5904560 YP_001676375.1 CDS Shal_4176 NC_010334.1 5076955 5077353 D PFAM: RNA-binding S4 domain protein; KEGG: slo:Shew_3621 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 5076955..5077353 Shewanella halifaxensis HAW-EB4 5905791 YP_001676376.1 CDS hslO NC_010334.1 5077370 5078242 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 5077370..5078242 Shewanella halifaxensis HAW-EB4 5905792 YP_001676377.1 CDS Shal_4178 NC_010334.1 5078474 5080015 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 5078474..5080015 Shewanella halifaxensis HAW-EB4 5904180 YP_001676378.1 CDS Shal_4179 NC_010334.1 5080325 5080747 D KEGG: slo:Shew_3626 hypothetical protein; hypothetical protein 5080325..5080747 Shewanella halifaxensis HAW-EB4 5904181 YP_001676379.1 CDS Shal_4180 NC_010334.1 5080744 5080953 D PFAM: helix-turn-helix domain protein; KEGG: ccr:CC_2232 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 5080744..5080953 Shewanella halifaxensis HAW-EB4 5906721 YP_001676380.1 CDS Shal_4181 NC_010334.1 5081171 5083012 D PFAM: peptidase M14 carboxypeptidase A; KEGG: sbl:Sbal_4213 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 5081171..5083012 Shewanella halifaxensis HAW-EB4 5906722 YP_001676381.1 CDS Shal_4182 NC_010334.1 5083520 5084323 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbm:Shew185_0141 methyltransferase type 12; type 12 methyltransferase complement(5083520..5084323) Shewanella halifaxensis HAW-EB4 5906099 YP_001676382.1 CDS Shal_4183 NC_010334.1 5084727 5085482 D KEGG: shn:Shewana3_0138 lipoprotein, putative; putative lipoprotein 5084727..5085482 Shewanella halifaxensis HAW-EB4 5906100 YP_001676383.1 CDS Shal_4184 NC_010334.1 5085612 5086271 D KEGG: cps:CPS_0009 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 5085612..5086271 Shewanella halifaxensis HAW-EB4 5906355 YP_001676384.1 CDS Shal_4185 NC_010334.1 5086346 5086723 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: she:Shewmr4_0137 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C complement(5086346..5086723) Shewanella halifaxensis HAW-EB4 5906356 YP_001676385.1 CDS Shal_4186 NC_010334.1 5086723 5088897 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: she:Shewmr4_0136 oligopeptidase B; oligopeptidase B complement(5086723..5088897) Shewanella halifaxensis HAW-EB4 5905592 YP_001676386.1 CDS ribB NC_010334.1 5089522 5090160 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 5089522..5090160 Shewanella halifaxensis HAW-EB4 5905593 YP_001676387.1 CDS Shal_4188 NC_010334.1 5090434 5093652 D KEGG: shn:Shewana3_0133 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5090434..5093652 Shewanella halifaxensis HAW-EB4 5906934 YP_001676388.1 CDS Shal_4189 NC_010334.1 5093727 5094254 R PFAM: Ferritin Dps family protein; KEGG: slo:Shew_0042 ferritin, Dps family protein; ferroxidase complement(5093727..5094254) Shewanella halifaxensis HAW-EB4 5906935 YP_001676389.1 CDS Shal_4190 NC_010334.1 5094603 5095847 D TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: slo:Shew_0046 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 5094603..5095847 Shewanella halifaxensis HAW-EB4 5906150 YP_001676390.1 CDS Shal_4191 NC_010334.1 5095880 5096650 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 5095880..5096650 Shewanella halifaxensis HAW-EB4 5906151 YP_001676391.1 CDS Shal_4192 NC_010334.1 5096775 5097326 R PFAM: Ankyrin; KEGG: sbm:Shew185_0251 ankyrin; ankyrin complement(5096775..5097326) Shewanella halifaxensis HAW-EB4 5906212 YP_001676392.1 CDS Shal_4193 NC_010334.1 5097504 5099018 R PFAM: Catalase domain protein; KEGG: sbm:Shew185_0250 catalase; catalase complement(5097504..5099018) Shewanella halifaxensis HAW-EB4 5906213 YP_001676393.1 CDS Shal_4194 NC_010334.1 5099444 5100310 D PFAM: protein of unknown function DUF333; KEGG: saz:Sama_1095 conserved hypothetical protein; hypothetical protein 5099444..5100310 Shewanella halifaxensis HAW-EB4 5906531 YP_001676394.1 CDS Shal_4195 NC_010334.1 5100370 5101143 R hypothetical protein complement(5100370..5101143) Shewanella halifaxensis HAW-EB4 5906532 YP_001676395.1 CDS Shal_4196 NC_010334.1 5101146 5101625 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_3947 ECF sigma factor PrtI; ECF subfamily RNA polymerase sigma-24 factor complement(5101146..5101625) Shewanella halifaxensis HAW-EB4 5904801 YP_001676396.1 CDS Shal_4197 NC_010334.1 5101632 5102411 R KEGG: cvi:CV_3514 hypothetical protein; hypothetical protein complement(5101632..5102411) Shewanella halifaxensis HAW-EB4 5904802 YP_001676397.1 CDS Shal_4198 NC_010334.1 5102402 5103286 R PFAM: protein of unknown function DUF692; KEGG: shn:Shewana3_0975 protein of unknown function DUF692; hypothetical protein complement(5102402..5103286) Shewanella halifaxensis HAW-EB4 5906636 YP_001676398.1 CDS Shal_4199 NC_010334.1 5103286 5103570 R KEGG: cps:CPS_0845 hypothetical protein; hypothetical protein complement(5103286..5103570) Shewanella halifaxensis HAW-EB4 5906637 YP_001676399.1 CDS Shal_4200 NC_010334.1 5103713 5104936 R PFAM: sodium/glutamate symporter; KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter complement(5103713..5104936) Shewanella halifaxensis HAW-EB4 5906808 YP_001676400.1 CDS Shal_4201 NC_010334.1 5105088 5105249 R KEGG: vha:VIBHAR_05692 hypothetical protein; hypothetical protein complement(5105088..5105249) Shewanella halifaxensis HAW-EB4 5906809 YP_001676401.1 CDS Shal_4202 NC_010334.1 5105331 5106074 R PFAM: glycosyl transferase family 25; KEGG: par:Psyc_1207 probable glycosyl transferase family 25, LPS biosynthesis; glycosyl transferase family protein complement(5105331..5106074) Shewanella halifaxensis HAW-EB4 5906557 YP_001676402.1 CDS Shal_4203 NC_010334.1 5106297 5107376 D PFAM: glycosyl transferase group 1; KEGG: shn:Shewana3_4093 glycosyl transferase, group 1; group 1 glycosyl transferase 5106297..5107376 Shewanella halifaxensis HAW-EB4 5906558 YP_001676403.1 CDS Shal_4204 NC_010334.1 5107675 5108442 D PFAM: glycosyl transferase family 2; KEGG: spc:Sputcn32_3892 glycosyl transferase, family 2; glycosyl transferase family protein 5107675..5108442 Shewanella halifaxensis HAW-EB4 5903478 YP_001676404.1 CDS Shal_4205 NC_010334.1 5108499 5109464 D PFAM: polysaccharide pyruvyl transferase; KEGG: apl:APL_1030 hypothetical protein; polysaccharide pyruvyl transferase 5108499..5109464 Shewanella halifaxensis HAW-EB4 5903479 YP_001676405.1 CDS Shal_4206 NC_010334.1 5109860 5110846 D PFAM: glycosyl transferase family 2; KEGG: cjr:CJE1280 lipooligosaccharide biosynthesis galactosyltransferase, putative; glycosyl transferase family protein 5109860..5110846 Shewanella halifaxensis HAW-EB4 5904489 YP_001676406.1 CDS Shal_4207 NC_010334.1 5110974 5111690 R PFAM: glycosyl transferase family 25; KEGG: vpa:VP0210 putative Lex2B; glycosyl transferase family protein complement(5110974..5111690) Shewanella halifaxensis HAW-EB4 5904490 YP_001676407.1 CDS Shal_4208 NC_010334.1 5111765 5112832 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sbm:Shew185_4334 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(5111765..5112832) Shewanella halifaxensis HAW-EB4 5905520 YP_001676408.1 CDS Shal_4209 NC_010334.1 5112862 5113947 R PFAM: glycosyl transferase group 1; KEGG: sbm:Shew185_4335 glycosyl transferase group 1; group 1 glycosyl transferase complement(5112862..5113947) Shewanella halifaxensis HAW-EB4 5905521 YP_001676409.1 CDS Shal_4210 NC_010334.1 5113944 5115029 R KEGG: sbl:Sbal_0063 hypothetical protein; hypothetical protein complement(5113944..5115029) Shewanella halifaxensis HAW-EB4 5905934 YP_001676410.1 CDS Shal_4211 NC_010334.1 5115088 5116173 R PFAM: glycosyl transferase family 9; KEGG: slo:Shew_3702 glycosyl transferase, family 9; glycosyl transferase family protein complement(5115088..5116173) Shewanella halifaxensis HAW-EB4 5905935 YP_001676411.1 CDS Shal_4212 NC_010334.1 5116259 5116990 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 5116259..5116990 Shewanella halifaxensis HAW-EB4 5906730 YP_001676412.1 CDS Shal_4213 NC_010334.1 5117091 5118356 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: shw:Sputw3181_0052 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase complement(5117091..5118356) Shewanella halifaxensis HAW-EB4 5906731 YP_001676413.1 CDS Shal_4214 NC_010334.1 5118533 5119174 D PFAM: regulatory protein TetR; KEGG: spc:Sputcn32_3900 transcriptional regulator, TetR family; TetR family transcriptional regulator 5118533..5119174 Shewanella halifaxensis HAW-EB4 5904555 YP_001676414.1 CDS Shal_4215 NC_010334.1 5119422 5120618 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 5119422..5120618 Shewanella halifaxensis HAW-EB4 5904556 YP_001676415.1 CDS tdh NC_010334.1 5120704 5121729 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 5120704..5121729 Shewanella halifaxensis HAW-EB4 5903753 YP_001676416.1 CDS Shal_4217 NC_010334.1 5121858 5122166 D PFAM: Rhodanese domain protein; KEGG: sfr:Sfri_3940 rhodanese domain protein; rhodanese domain-containing protein 5121858..5122166 Shewanella halifaxensis HAW-EB4 5903754 YP_001676417.1 CDS Shal_4218 NC_010334.1 5122269 5123108 D PFAM: Rhomboid family protein; KEGG: slo:Shew_3712 rhomboid family protein; rhomboid family protein 5122269..5123108 Shewanella halifaxensis HAW-EB4 5904170 YP_001676418.1 CDS Shal_4219 NC_010334.1 5123194 5123850 R PFAM: ThiJ/PfpI domain protein; KEGG: son:SO_4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain complement(5123194..5123850) Shewanella halifaxensis HAW-EB4 5904171 YP_001676419.1 CDS Shal_4220 NC_010334.1 5124238 5126994 D KEGG: slo:Shew_3714 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 5124238..5126994 Shewanella halifaxensis HAW-EB4 5904145 YP_001676420.1 CDS engB NC_010334.1 5127766 5128446 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(5127766..5128446) Shewanella halifaxensis HAW-EB4 5904146 YP_001676421.1 CDS Shal_4222 NC_010334.1 5128616 5129236 D PFAM: cytochrome c class I; KEGG: spc:Sputcn32_3908 cytochrome c, class I; cytochrome c class I 5128616..5129236 Shewanella halifaxensis HAW-EB4 5904079 YP_001676422.1 CDS Shal_4223 NC_010334.1 5130061 5130729 D KEGG: slo:Shew_3717 hypothetical protein; hypothetical protein 5130061..5130729 Shewanella halifaxensis HAW-EB4 5904080 YP_001676423.1 CDS Shal_4224 NC_010334.1 5130782 5131318 D PFAM: protein of unknown function DUF414; KEGG: slo:Shew_3718 hypothetical protein; hypothetical protein 5130782..5131318 Shewanella halifaxensis HAW-EB4 5903584 YP_001676424.1 CDS Shal_4225 NC_010334.1 5131408 5131875 D KEGG: sbm:Shew185_4350 hypothetical protein; hypothetical protein 5131408..5131875 Shewanella halifaxensis HAW-EB4 5903585 YP_001676425.1 CDS Shal_4226 NC_010334.1 5132165 5133505 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5132165..5133505 Shewanella halifaxensis HAW-EB4 5903596 YP_001676426.1 CDS Shal_4227 NC_010334.1 5133668 5135455 D PFAM: protein of unknown function DUF885; KEGG: slo:Shew_3722 protein of unknown function DUF885; hypothetical protein 5133668..5135455 Shewanella halifaxensis HAW-EB4 5903597 YP_001676427.1 CDS Shal_4228 NC_010334.1 5135600 5136574 D PFAM: alpha/beta hydrolase fold; KEGG: shn:Shewana3_4119 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 5135600..5136574 Shewanella halifaxensis HAW-EB4 5904376 YP_001676428.1 CDS Shal_4229 NC_010334.1 5136628 5138709 R TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: shw:Sputw3181_0454 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA complement(5136628..5138709) Shewanella halifaxensis HAW-EB4 5904377 YP_001676429.1 CDS Shal_4230 NC_010334.1 5138725 5139858 R TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sbl:Sbal_3987 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB complement(5138725..5139858) Shewanella halifaxensis HAW-EB4 5904279 YP_001676430.1 CDS Shal_4231 NC_010334.1 5139855 5140553 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: sbl:Sbal_3986 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(5139855..5140553) Shewanella halifaxensis HAW-EB4 5904280 YP_001676431.1 CDS Shal_4232 NC_010334.1 5140783 5141052 R PFAM: export protein FliQ family 3; KEGG: sbl:Sbal_3985 export protein FliQ, family 3; export protein FliQ complement(5140783..5141052) Shewanella halifaxensis HAW-EB4 5903327 YP_001676432.1 CDS fliP NC_010334.1 5141243 5141971 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(5141243..5141971) Shewanella halifaxensis HAW-EB4 5903328 YP_001676433.1 CDS Shal_4234 NC_010334.1 5141974 5142330 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: shw:Sputw3181_0459 flagellar motor switch protein FliN; flagellar motor switch protein FliN complement(5141974..5142330) Shewanella halifaxensis HAW-EB4 5903386 YP_001676434.1 CDS Shal_4235 NC_010334.1 5142323 5143204 R KEGG: sbl:Sbal_3982 hypothetical protein; hypothetical protein complement(5142323..5143204) Shewanella halifaxensis HAW-EB4 5903387 YP_001676435.1 CDS Shal_4236 NC_010334.1 5143749 5144663 D PFAM: OmpA/MotB domain protein; KEGG: vha:VIBHAR_04970 hypothetical protein; OmpA/MotB domain-containing protein 5143749..5144663 Shewanella halifaxensis HAW-EB4 5904789 YP_001676436.1 CDS Shal_4237 NC_010334.1 5144650 5145957 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shw:Sputw3181_0461 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 5144650..5145957 Shewanella halifaxensis HAW-EB4 5904790 YP_001676437.1 CDS Shal_4238 NC_010334.1 5145987 5146325 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sbl:Sbal_3980 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 5145987..5146325 Shewanella halifaxensis HAW-EB4 5904751 YP_001676438.1 CDS fliF NC_010334.1 5146405 5148123 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 5146405..5148123 Shewanella halifaxensis HAW-EB4 5904752 YP_001676439.1 CDS fliG NC_010334.1 5148192 5149178 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 5148192..5149178 Shewanella halifaxensis HAW-EB4 5904725 YP_001676440.1 CDS fliH NC_010334.1 5149178 5149930 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 5149178..5149930 Shewanella halifaxensis HAW-EB4 5904726 YP_001676441.1 CDS Shal_4242 NC_010334.1 5149920 5151260 D KEGG: sbl:Sbal_3976 ATPase, FliI/YscN family; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase 5149920..5151260 Shewanella halifaxensis HAW-EB4 5904695 YP_001676442.1 CDS Shal_4243 NC_010334.1 5151310 5151732 D KEGG: sdn:Sden_3655 hypothetical protein; hypothetical protein 5151310..5151732 Shewanella halifaxensis HAW-EB4 5904696 YP_001676443.1 CDS Shal_4244 NC_010334.1 5151729 5152187 R KEGG: shw:Sputw3181_0468 hypothetical protein; hypothetical protein complement(5151729..5152187) Shewanella halifaxensis HAW-EB4 5904639 YP_001676444.1 CDS Shal_4245 NC_010334.1 5152180 5152467 R KEGG: shw:Sputw3181_0469 hypothetical protein; hypothetical protein complement(5152180..5152467) Shewanella halifaxensis HAW-EB4 5904640 YP_001676445.1 CDS Shal_4246 NC_010334.1 5152575 5153321 R KEGG: sbl:Sbal_3972 SAF domain; SAF domain-containing protein complement(5152575..5153321) Shewanella halifaxensis HAW-EB4 5902821 YP_001676446.1 CDS flgB NC_010334.1 5153406 5153756 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB 5153406..5153756 Shewanella halifaxensis HAW-EB4 5902822 YP_001676447.1 CDS Shal_4248 NC_010334.1 5153764 5154183 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3650 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 5153764..5154183 Shewanella halifaxensis HAW-EB4 5903248 YP_001676448.1 CDS Shal_4249 NC_010334.1 5154183 5154845 D PFAM: flagellar hook capping protein; KEGG: sdn:Sden_3649 flagellar hook capping protein; flagellar hook capping protein 5154183..5154845 Shewanella halifaxensis HAW-EB4 5903249 YP_001676449.1 CDS flgE NC_010334.1 5154868 5156076 D the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE 5154868..5156076 Shewanella halifaxensis HAW-EB4 5904534 YP_001676450.1 CDS Shal_4251 NC_010334.1 5156086 5156820 D TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: sbl:Sbal_3967 flagellar basal-body rod protein FlgF; flagellar basal-body rod protein FlgF 5156086..5156820 Shewanella halifaxensis HAW-EB4 5904535 YP_001676451.1 CDS Shal_4252 NC_010334.1 5156859 5157644 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shw:Sputw3181_0476 flagellar basal-body rod protein FlgG; flagellar basal-body rod protein FlgG 5156859..5157644 Shewanella halifaxensis HAW-EB4 5904530 YP_001676452.1 CDS flgH NC_010334.1 5157710 5158384 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 5157710..5158384 Shewanella halifaxensis HAW-EB4 5904531 YP_001676453.1 CDS flgI NC_010334.1 5158422 5159552 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 5158422..5159552 Shewanella halifaxensis HAW-EB4 5904507 YP_001676454.1 CDS flgJ NC_010334.1 5159552 5159965 D FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase 5159552..5159965 Shewanella halifaxensis HAW-EB4 5904508 YP_001676455.1 CDS Shal_4256 NC_010334.1 5160027 5161400 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbl:Sbal_3962 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 5160027..5161400 Shewanella halifaxensis HAW-EB4 5904472 YP_001676456.1 CDS Shal_4257 NC_010334.1 5161411 5162328 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: spc:Sputcn32_3458 flagellar hook-associated protein 3; flagellar hook-associated protein 3 5161411..5162328 Shewanella halifaxensis HAW-EB4 5904473 YP_001676457.1 CDS Shal_4258 NC_010334.1 5162380 5163414 D KEGG: sbl:Sbal_3960 hypothetical protein; hypothetical protein 5162380..5163414 Shewanella halifaxensis HAW-EB4 5904433 YP_001676458.1 CDS Shal_4259 NC_010334.1 5163452 5164627 R PFAM: protein of unknown function UPF0153; KEGG: sbl:Sbal_3863 flagellar biosynthesis protein, putative; hypothetical protein complement(5163452..5164627) Shewanella halifaxensis HAW-EB4 5904434 YP_001676459.1 CDS Shal_4260 NC_010334.1 5164876 5165691 D PFAM: flagellin domain protein; KEGG: shw:Sputw3181_0483 flagellin domain protein; flagellin domain-containing protein 5164876..5165691 Shewanella halifaxensis HAW-EB4 5904400 YP_001676460.1 CDS Shal_4261 NC_010334.1 5165984 5167372 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: sbl:Sbal_3955 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 5165984..5167372 Shewanella halifaxensis HAW-EB4 5904401 YP_001676461.1 CDS Shal_4262 NC_010334.1 5167387 5167767 D PFAM: flagellar protein FliS; KEGG: shw:Sputw3181_0486 flagellar protein FliS; flagellar protein FliS 5167387..5167767 Shewanella halifaxensis HAW-EB4 5904398 YP_001676462.1 CDS Shal_4263 NC_010334.1 5167736 5168062 D KEGG: sbl:Sbal_3953 hypothetical protein; hypothetical protein 5167736..5168062 Shewanella halifaxensis HAW-EB4 5904399 YP_001676463.1 CDS Shal_4264 NC_010334.1 5168055 5169188 D PFAM: flagellar hook-length control protein; KEGG: sbl:Sbal_3952 flagellar hook-length control protein; flagellar hook-length control protein 5168055..5169188 Shewanella halifaxensis HAW-EB4 5904386 YP_001676464.1 CDS Shal_4265 NC_010334.1 5169203 5169658 D PFAM: flagellar basal body-associated protein FliL; KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 5169203..5169658 Shewanella halifaxensis HAW-EB4 5904387 YP_001676465.1 CDS fliA NC_010334.1 5169670 5170392 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 5169670..5170392 Shewanella halifaxensis HAW-EB4 5904367 YP_001676466.1 CDS Shal_4267 NC_010334.1 5170407 5171264 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 5170407..5171264 Shewanella halifaxensis HAW-EB4 5904368 YP_001676467.1 CDS Shal_4268 NC_010334.1 5171264 5172274 D PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB domain-containing protein 5171264..5172274 Shewanella halifaxensis HAW-EB4 5904342 YP_001676468.1 CDS Shal_4269 NC_010334.1 5172259 5172699 D KEGG: sdn:Sden_3630 type IV pilus assembly PilZ; type IV pilus assembly PilZ 5172259..5172699 Shewanella halifaxensis HAW-EB4 5904343 YP_001676469.1 CDS Shal_4270 NC_010334.1 5172744 5173028 D KEGG: shw:Sputw3181_0494 hypothetical protein; hypothetical protein 5172744..5173028 Shewanella halifaxensis HAW-EB4 5904315 YP_001676470.1 CDS Shal_4271 NC_010334.1 5179529 5180950 R TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; KEGG: slo:Shew_3812 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type accessory protein FixG complement(5179529..5180950) Shewanella halifaxensis HAW-EB4 5907050 YP_001676471.1 CDS Shal_4272 NC_010334.1 5181039 5181392 D KEGG: sbm:Shew185_4357 hypothetical protein; hypothetical protein 5181039..5181392 Shewanella halifaxensis HAW-EB4 5903402 YP_001676472.1 CDS Shal_4273 NC_010334.1 5181531 5182433 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 5181531..5182433 Shewanella halifaxensis HAW-EB4 5903403 YP_001676473.1 CDS Shal_4274 NC_010334.1 5182616 5182813 D KEGG: shn:Shewana3_4124 hypothetical protein; hypothetical protein 5182616..5182813 Shewanella halifaxensis HAW-EB4 5903151 YP_001676474.1 CDS Shal_4275 NC_010334.1 5182810 5184006 R PFAM: sodium/hydrogen exchanger; KEGG: slo:Shew_3170 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(5182810..5184006) Shewanella halifaxensis HAW-EB4 5903152 YP_001676475.1 CDS Shal_4276 NC_010334.1 5184587 5185396 D TIGRFAM: phosphate binding protein; KEGG: son:SO_4292 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate-binding protein 5184587..5185396 Shewanella halifaxensis HAW-EB4 5902956 YP_001676476.1 CDS Shal_4277 NC_010334.1 5185475 5186380 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO_4291 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5185475..5186380 Shewanella halifaxensis HAW-EB4 5902957 YP_001676477.1 CDS Shal_4278 NC_010334.1 5186380 5187237 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO_4290 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5186380..5187237 Shewanella halifaxensis HAW-EB4 5904779 YP_001676478.1 CDS Shal_4279 NC_010334.1 5187251 5188000 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 5187251..5188000 Shewanella halifaxensis HAW-EB4 5904780 YP_001676479.1 CDS Shal_4280 NC_010334.1 5188251 5188532 D KEGG: cps:CPS_2434 hypothetical protein; hypothetical protein 5188251..5188532 Shewanella halifaxensis HAW-EB4 5904879 YP_001676480.1 CDS Shal_4281 NC_010334.1 5188829 5189872 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 5188829..5189872 Shewanella halifaxensis HAW-EB4 5904880 YP_001676481.1 CDS Shal_4282 NC_010334.1 5190137 5190928 D PFAM: regulatory protein LuxR; KEGG: vvu:VV2_1396 DNA-binding HTH domain-containing protein; LuxR family transcriptional regulator 5190137..5190928 Shewanella halifaxensis HAW-EB4 5904889 YP_001676482.1 CDS Shal_4283 NC_010334.1 5190992 5192554 R KEGG: cps:CPS_0108 hypothetical protein; hypothetical protein complement(5190992..5192554) Shewanella halifaxensis HAW-EB4 5904890 YP_001676483.1 CDS Shal_4284 NC_010334.1 5193070 5193438 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ppr:PBPRA3023 hypothetical sigma-54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA 5193070..5193438 Shewanella halifaxensis HAW-EB4 5905010 YP_001676484.1 CDS Shal_4285 NC_010334.1 5193593 5195422 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5193593..5195422) Shewanella halifaxensis HAW-EB4 5905011 YP_001676485.1 CDS Shal_4286 NC_010334.1 5195519 5196289 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sbm:Shew185_4361 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(5195519..5196289) Shewanella halifaxensis HAW-EB4 5905085 YP_001676486.1 CDS Shal_4287 NC_010334.1 5196470 5198602 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_3841 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5196470..5198602) Shewanella halifaxensis HAW-EB4 5905086 YP_001676487.1 CDS Shal_4288 NC_010334.1 5198867 5200231 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: slo:Shew_3842 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(5198867..5200231) Shewanella halifaxensis HAW-EB4 5905155 YP_001676488.1 CDS Shal_4289 NC_010334.1 5200347 5200703 R PFAM: DsrE family protein; KEGG: slo:Shew_3843 DsrE family protein; DsrE family protein complement(5200347..5200703) Shewanella halifaxensis HAW-EB4 5905156 YP_001676489.1 CDS Shal_4290 NC_010334.1 5200820 5203228 R PFAM: protein of unknown function DUF214; KEGG: gvi:glr1418 putative ABC transport system permease protein; hypothetical protein complement(5200820..5203228) Shewanella halifaxensis HAW-EB4 5905138 YP_001676490.1 CDS Shal_4291 NC_010334.1 5203225 5203929 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6481 ABC transporter related; ABC transporter-like protein complement(5203225..5203929) Shewanella halifaxensis HAW-EB4 5905139 YP_001676491.1 CDS Shal_4292 NC_010334.1 5203944 5205173 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sus:Acid_6482 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(5203944..5205173) Shewanella halifaxensis HAW-EB4 5905180 YP_001676492.1 CDS atpC NC_010334.1 5205743 5206171 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5205743..5206171) Shewanella halifaxensis HAW-EB4 5905181 YP_001676493.1 CDS Shal_4294 NC_010334.1 5206203 5207579 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5206203..5207579) Shewanella halifaxensis HAW-EB4 5905182 YP_001676494.1 CDS Shal_4295 NC_010334.1 5207615 5208475 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5207615..5208475) Shewanella halifaxensis HAW-EB4 5905183 YP_001676495.1 CDS Shal_4296 NC_010334.1 5208524 5210065 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5208524..5210065) Shewanella halifaxensis HAW-EB4 5905187 YP_001676496.1 CDS Shal_4297 NC_010334.1 5210080 5210613 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(5210080..5210613) Shewanella halifaxensis HAW-EB4 5905188 YP_001676497.1 CDS Shal_4298 NC_010334.1 5210630 5211100 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5210630..5211100) Shewanella halifaxensis HAW-EB4 5905238 YP_001676498.1 CDS Shal_4299 NC_010334.1 5211128 5211385 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5211128..5211385) Shewanella halifaxensis HAW-EB4 5905239 YP_001676499.1 CDS Shal_4300 NC_010334.1 5211418 5212248 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5211418..5212248) Shewanella halifaxensis HAW-EB4 5905427 YP_001676500.1 CDS Shal_4301 NC_010334.1 5212261 5212644 R PFAM: ATP synthase I chain; KEGG: slo:Shew_3852 ATP synthase I chain; ATP synthase I chain complement(5212261..5212644) Shewanella halifaxensis HAW-EB4 5905428 YP_001676501.1 CDS Shal_4302 NC_010334.1 5212869 5213759 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: saz:Sama_3652 ParB family protein; parB-like partition protein complement(5212869..5213759) Shewanella halifaxensis HAW-EB4 5905451 YP_001676502.1 CDS Shal_4303 NC_010334.1 5213769 5214557 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_3854 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(5213769..5214557) Shewanella halifaxensis HAW-EB4 5905452 YP_001676503.1 CDS gidB NC_010334.1 5214786 5215409 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(5214786..5215409) Shewanella halifaxensis HAW-EB4 5905500 YP_001676504.1 CDS Shal_4305 NC_010334.1 5215529 5217418 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5215529..5217418) Shewanella halifaxensis HAW-EB4 5905501 YP_001676505.1 CDS Shal_4306 NC_010334.1 5217876 5218316 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(5217876..5218316) Shewanella halifaxensis HAW-EB4 5903710 YP_001676506.1 CDS Shal_4307 NC_010334.1 5218736 5219707 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: slo:Shew_3859 inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 5218736..5219707 Shewanella halifaxensis HAW-EB4 5903711 YP_001676507.1 CDS Shal_4308 NC_010334.1 5219943 5220890 D PFAM: SEC-C motif domain protein; KEGG: cps:CPS_2413 SEC-C motif domain protein; SecC motif-containing protein 5219943..5220890 Shewanella halifaxensis HAW-EB4 5905670 YP_001676508.1 CDS Shal_4309 NC_010334.1 5221319 5221963 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_3118 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(5221319..5221963) Shewanella halifaxensis HAW-EB4 5905671 YP_001676509.1 CDS trmE NC_010334.1 5222712 5224073 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5222712..5224073) Shewanella halifaxensis HAW-EB4 5905613 YP_001676510.1 CDS Shal_4311 NC_010334.1 5224189 5225823 R PFAM: 60 kDa inner membrane insertion protein; KEGG: slo:Shew_3866 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(5224189..5225823) Shewanella halifaxensis HAW-EB4 5905614 YP_001676511.1 CDS Shal_4312 NC_010334.1 5225827 5226081 R PFAM: protein of unknown function DUF37; KEGG: shw:Sputw3181_4093 protein of unknown function DUF37; hypothetical protein complement(5225827..5226081) Shewanella halifaxensis HAW-EB4 5905636 YP_001676512.1 CDS rnpA NC_010334.1 5226048 5226410 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(5226048..5226410) Shewanella halifaxensis HAW-EB4 5905637 YP_001676513.1 CDS rpmH NC_010334.1 5226417 5226554 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(5226417..5226554) Shewanella halifaxensis HAW-EB4 5905879 Shal_R0004 tRNA Shal_R0004 NC_010334.1 47327 47403 D tRNA-Asp 47327..47403 Shewanella halifaxensis HAW-EB4 5905024 Shal_R0006 tRNA Shal_R0006 NC_010334.1 547851 547927 D tRNA-Ile 547851..547927 Shewanella halifaxensis HAW-EB4 5906632 Shal_R0007 tRNA Shal_R0007 NC_010334.1 547993 548068 D tRNA-Ala 547993..548068 Shewanella halifaxensis HAW-EB4 5906631 Shal_R0010 tRNA Shal_R0010 NC_010334.1 601906 601996 R tRNA-Sec complement(601906..601996) Shewanella halifaxensis HAW-EB4 5905800 Shal_R0011 tRNA Shal_R0011 NC_010334.1 707314 707404 D tRNA-Ser 707314..707404 Shewanella halifaxensis HAW-EB4 5904431 Shal_R0012 tRNA Shal_R0012 NC_010334.1 707746 707836 D tRNA-Ser 707746..707836 Shewanella halifaxensis HAW-EB4 5904432 Shal_R0016 tRNA Shal_R0016 NC_010334.1 839171 839255 D tRNA-Leu 839171..839255 Shewanella halifaxensis HAW-EB4 5906068 Shal_R0017 tRNA Shal_R0017 NC_010334.1 1234401 1234477 R tRNA-Met complement(1234401..1234477) Shewanella halifaxensis HAW-EB4 5905314 Shal_R0018 tRNA Shal_R0018 NC_010334.1 1402971 1403046 R tRNA-Thr complement(1402971..1403046) Shewanella halifaxensis HAW-EB4 5906462 Shal_R0019 tRNA Shal_R0019 NC_010334.1 1403099 1403174 R tRNA-Phe complement(1403099..1403174) Shewanella halifaxensis HAW-EB4 5906454 Shal_R0020 tRNA Shal_R0020 NC_010334.1 1403703 1403778 R tRNA-Thr complement(1403703..1403778) Shewanella halifaxensis HAW-EB4 5906405 Shal_R0021 tRNA Shal_R0021 NC_010334.1 1403831 1403906 R tRNA-Phe complement(1403831..1403906) Shewanella halifaxensis HAW-EB4 5906365 Shal_R0022 tRNA Shal_R0022 NC_010334.1 1404344 1404419 R tRNA-Thr complement(1404344..1404419) Shewanella halifaxensis HAW-EB4 5906229 Shal_R0023 tRNA Shal_R0023 NC_010334.1 1404472 1404547 R tRNA-Phe complement(1404472..1404547) Shewanella halifaxensis HAW-EB4 5906170 Shal_R0024 tRNA Shal_R0024 NC_010334.1 1503124 1503215 D tRNA-Ser 1503124..1503215 Shewanella halifaxensis HAW-EB4 5903873 Shal_R0025 tRNA Shal_R0025 NC_010334.1 1503237 1503313 D tRNA-Arg 1503237..1503313 Shewanella halifaxensis HAW-EB4 5903874 Shal_R0026 tRNA Shal_R0026 NC_010334.1 1503344 1503420 D tRNA-Arg 1503344..1503420 Shewanella halifaxensis HAW-EB4 5904189 Shal_R0027 tRNA Shal_R0027 NC_010334.1 1503453 1503529 D tRNA-Arg 1503453..1503529 Shewanella halifaxensis HAW-EB4 5904281 Shal_R0028 tRNA Shal_R0028 NC_010334.1 1503561 1503637 D tRNA-Arg 1503561..1503637 Shewanella halifaxensis HAW-EB4 5905992 Shal_R0029 tRNA Shal_R0029 NC_010334.1 1503673 1503749 D tRNA-Arg 1503673..1503749 Shewanella halifaxensis HAW-EB4 5906019 Shal_R0030 tRNA Shal_R0030 NC_010334.1 1503759 1503850 D tRNA-Ser 1503759..1503850 Shewanella halifaxensis HAW-EB4 5906135 Shal_R0031 tRNA Shal_R0031 NC_010334.1 1503927 1504003 D tRNA-Arg 1503927..1504003 Shewanella halifaxensis HAW-EB4 5907010 Shal_R0032 tRNA Shal_R0032 NC_010334.1 1504037 1504113 D tRNA-Arg 1504037..1504113 Shewanella halifaxensis HAW-EB4 5906698 Shal_R0033 tRNA Shal_R0033 NC_010334.1 1504123 1504214 D tRNA-Ser 1504123..1504214 Shewanella halifaxensis HAW-EB4 5903886 Shal_R0035 tRNA Shal_R0035 NC_010334.1 1716454 1716529 R tRNA-Arg complement(1716454..1716529) Shewanella halifaxensis HAW-EB4 5906423 Shal_R0036 tRNA Shal_R0036 NC_010334.1 1854695 1854770 R tRNA-Val complement(1854695..1854770) Shewanella halifaxensis HAW-EB4 5906586 Shal_R0037 tRNA Shal_R0037 NC_010334.1 1854808 1854883 R tRNA-Val complement(1854808..1854883) Shewanella halifaxensis HAW-EB4 5906587 Shal_R0038 tRNA Shal_R0038 NC_010334.1 1854921 1854996 R tRNA-Val complement(1854921..1854996) Shewanella halifaxensis HAW-EB4 5906018 Shal_R0039 tRNA Shal_R0039 NC_010334.1 1855034 1855109 R tRNA-Val complement(1855034..1855109) Shewanella halifaxensis HAW-EB4 5905705 Shal_R0040 tRNA Shal_R0040 NC_010334.1 1855147 1855222 R tRNA-Val complement(1855147..1855222) Shewanella halifaxensis HAW-EB4 5905689 Shal_R0041 tRNA Shal_R0041 NC_010334.1 1855260 1855335 R tRNA-Val complement(1855260..1855335) Shewanella halifaxensis HAW-EB4 5905654 Shal_R0042 tRNA Shal_R0042 NC_010334.1 1855373 1855448 R tRNA-Val complement(1855373..1855448) Shewanella halifaxensis HAW-EB4 5905197 Shal_R0043 tRNA Shal_R0043 NC_010334.1 1855486 1855561 R tRNA-Val complement(1855486..1855561) Shewanella halifaxensis HAW-EB4 5906656 Shal_R0044 tRNA Shal_R0044 NC_010334.1 1855599 1855674 R tRNA-Val complement(1855599..1855674) Shewanella halifaxensis HAW-EB4 5904093 Shal_R0045 tRNA Shal_R0045 NC_010334.1 1855712 1855787 R tRNA-Val complement(1855712..1855787) Shewanella halifaxensis HAW-EB4 5903757 Shal_R0046 tRNA Shal_R0046 NC_010334.1 1855826 1855901 R tRNA-Val complement(1855826..1855901) Shewanella halifaxensis HAW-EB4 5903994 Shal_R0047 tRNA Shal_R0047 NC_010334.1 1857970 1858045 D tRNA-Ala 1857970..1858045 Shewanella halifaxensis HAW-EB4 5903583 Shal_R0048 tRNA Shal_R0048 NC_010334.1 1858126 1858201 D tRNA-Glu 1858126..1858201 Shewanella halifaxensis HAW-EB4 5903786 Shal_R0049 tRNA Shal_R0049 NC_010334.1 1858311 1858386 D tRNA-Glu 1858311..1858386 Shewanella halifaxensis HAW-EB4 5904207 Shal_R0050 tRNA Shal_R0050 NC_010334.1 1858496 1858571 D tRNA-Glu 1858496..1858571 Shewanella halifaxensis HAW-EB4 5903308 Shal_R0051 tRNA Shal_R0051 NC_010334.1 1858819 1858894 D tRNA-Glu 1858819..1858894 Shewanella halifaxensis HAW-EB4 5905044 Shal_R0052 tRNA Shal_R0052 NC_010334.1 1859144 1859219 D tRNA-Glu 1859144..1859219 Shewanella halifaxensis HAW-EB4 5904520 Shal_R0053 tRNA Shal_R0053 NC_010334.1 1859467 1859542 D tRNA-Glu 1859467..1859542 Shewanella halifaxensis HAW-EB4 5906463 Shal_R0054 tRNA Shal_R0054 NC_010334.1 1859652 1859727 D tRNA-Glu 1859652..1859727 Shewanella halifaxensis HAW-EB4 5906230 Shal_R0055 tRNA Shal_R0055 NC_010334.1 1859775 1859850 D tRNA-Ala 1859775..1859850 Shewanella halifaxensis HAW-EB4 5905244 Shal_R0056 tRNA Shal_R0056 NC_010334.1 2029151 2029226 D tRNA-Lys 2029151..2029226 Shewanella halifaxensis HAW-EB4 5903391 Shal_R0057 tRNA Shal_R0057 NC_010334.1 2029285 2029360 D tRNA-Lys 2029285..2029360 Shewanella halifaxensis HAW-EB4 5903392 Shal_R0058 tRNA Shal_R0058 NC_010334.1 2029419 2029494 D tRNA-Lys 2029419..2029494 Shewanella halifaxensis HAW-EB4 5902978 Shal_R0059 tRNA Shal_R0059 NC_010334.1 2029553 2029628 D tRNA-Lys 2029553..2029628 Shewanella halifaxensis HAW-EB4 5903000 Shal_R0060 tRNA Shal_R0060 NC_010334.1 2029687 2029762 D tRNA-Lys 2029687..2029762 Shewanella halifaxensis HAW-EB4 5903170 Shal_R0061 tRNA Shal_R0061 NC_010334.1 2029958 2030033 D tRNA-Lys 2029958..2030033 Shewanella halifaxensis HAW-EB4 5902743 Shal_R0062 tRNA Shal_R0062 NC_010334.1 2030092 2030167 D tRNA-Lys 2030092..2030167 Shewanella halifaxensis HAW-EB4 5902836 Shal_R0063 tRNA Shal_R0063 NC_010334.1 2250569 2250645 D tRNA-Asp 2250569..2250645 Shewanella halifaxensis HAW-EB4 5903245 Shal_R0064 tRNA Shal_R0064 NC_010334.1 2250729 2250805 D tRNA-Asp 2250729..2250805 Shewanella halifaxensis HAW-EB4 5903875 Shal_R0065 tRNA Shal_R0065 NC_010334.1 2250886 2250962 D tRNA-Asp 2250886..2250962 Shewanella halifaxensis HAW-EB4 5904188 Shal_R0066 tRNA Shal_R0066 NC_010334.1 2322883 2322958 R tRNA-Asn complement(2322883..2322958) Shewanella halifaxensis HAW-EB4 5905604 Shal_R0067 tRNA Shal_R0067 NC_010334.1 2322998 2323073 R tRNA-Asn complement(2322998..2323073) Shewanella halifaxensis HAW-EB4 5905722 Shal_R0068 tRNA Shal_R0068 NC_010334.1 2323112 2323187 R tRNA-Asn complement(2323112..2323187) Shewanella halifaxensis HAW-EB4 5905658 Shal_R0069 tRNA Shal_R0069 NC_010334.1 2323249 2323324 R tRNA-Asn complement(2323249..2323324) Shewanella halifaxensis HAW-EB4 5905711 Shal_R0070 tRNA Shal_R0070 NC_010334.1 2323353 2323428 R tRNA-Asn complement(2323353..2323428) Shewanella halifaxensis HAW-EB4 5905774 Shal_R0071 tRNA Shal_R0071 NC_010334.1 2323471 2323546 R tRNA-Asn complement(2323471..2323546) Shewanella halifaxensis HAW-EB4 5905666 Shal_R0072 tRNA Shal_R0072 NC_010334.1 2323592 2323667 R tRNA-Asn complement(2323592..2323667) Shewanella halifaxensis HAW-EB4 5906671 Shal_R0073 tRNA Shal_R0073 NC_010334.1 2330202 2330286 R tRNA-Tyr complement(2330202..2330286) Shewanella halifaxensis HAW-EB4 5906526 Shal_R0074 tRNA Shal_R0074 NC_010334.1 2330397 2330481 R tRNA-Tyr complement(2330397..2330481) Shewanella halifaxensis HAW-EB4 5906409 Shal_R0075 tRNA Shal_R0075 NC_010334.1 2330594 2330678 R tRNA-Tyr complement(2330594..2330678) Shewanella halifaxensis HAW-EB4 5902963 Shal_R0076 tRNA Shal_R0076 NC_010334.1 2330760 2330844 R tRNA-Tyr complement(2330760..2330844) Shewanella halifaxensis HAW-EB4 5906280 Shal_R0077 tRNA Shal_R0077 NC_010334.1 2330875 2330959 R tRNA-Tyr complement(2330875..2330959) Shewanella halifaxensis HAW-EB4 5906115 Shal_R0078 tRNA Shal_R0078 NC_010334.1 2431203 2431279 D tRNA-Met 2431203..2431279 Shewanella halifaxensis HAW-EB4 5906653 Shal_R0079 tRNA Shal_R0079 NC_010334.1 2431293 2431369 D tRNA-Val 2431293..2431369 Shewanella halifaxensis HAW-EB4 5906535 Shal_R0080 tRNA Shal_R0080 NC_010334.1 2431407 2431483 D tRNA-Met 2431407..2431483 Shewanella halifaxensis HAW-EB4 5904221 Shal_R0081 tRNA Shal_R0081 NC_010334.1 2431486 2431562 D tRNA-Val 2431486..2431562 Shewanella halifaxensis HAW-EB4 5903729 Shal_R0082 tRNA Shal_R0082 NC_010334.1 2431759 2431835 D tRNA-Met 2431759..2431835 Shewanella halifaxensis HAW-EB4 5904323 Shal_R0083 tRNA Shal_R0083 NC_010334.1 2431880 2431956 D tRNA-Met 2431880..2431956 Shewanella halifaxensis HAW-EB4 5905376 Shal_R0084 tRNA Shal_R0084 NC_010334.1 2432002 2432078 D tRNA-Met 2432002..2432078 Shewanella halifaxensis HAW-EB4 5906113 Shal_R0085 tRNA Shal_R0085 NC_010334.1 2432124 2432200 D tRNA-Met 2432124..2432200 Shewanella halifaxensis HAW-EB4 5906471 Shal_R0086 tRNA Shal_R0086 NC_010334.1 2432246 2432322 D tRNA-Met 2432246..2432322 Shewanella halifaxensis HAW-EB4 5906376 Shal_R0087 tRNA Shal_R0087 NC_010334.1 2432517 2432593 D tRNA-Met 2432517..2432593 Shewanella halifaxensis HAW-EB4 5903927 Shal_R0088 tRNA Shal_R0088 NC_010334.1 2505228 2505303 D tRNA-Gly 2505228..2505303 Shewanella halifaxensis HAW-EB4 5906760 Shal_R0089 tRNA Shal_R0089 NC_010334.1 2505317 2505390 D tRNA-Cys 2505317..2505390 Shewanella halifaxensis HAW-EB4 5906761 Shal_R0090 tRNA Shal_R0090 NC_010334.1 2505476 2505561 D tRNA-Leu 2505476..2505561 Shewanella halifaxensis HAW-EB4 5906657 Shal_R0091 tRNA Shal_R0091 NC_010334.1 2510859 2510949 D tRNA-Ser 2510859..2510949 Shewanella halifaxensis HAW-EB4 5903332 Shal_R0092 tRNA Shal_R0092 NC_010334.1 2702837 2702926 R tRNA-Ser complement(2702837..2702926) Shewanella halifaxensis HAW-EB4 5903847 Shal_R0093 tRNA Shal_R0093 NC_010334.1 2830790 2830875 R tRNA-Leu complement(2830790..2830875) Shewanella halifaxensis HAW-EB4 5904634 Shal_R0094 tRNA Shal_R0094 NC_010334.1 2830986 2831059 R tRNA-Cys complement(2830986..2831059) Shewanella halifaxensis HAW-EB4 5902983 Shal_R0095 tRNA Shal_R0095 NC_010334.1 2831754 2831839 R tRNA-Leu complement(2831754..2831839) Shewanella halifaxensis HAW-EB4 5904573 Shal_R0096 tRNA Shal_R0096 NC_010334.1 2831922 2831995 R tRNA-Cys complement(2831922..2831995) Shewanella halifaxensis HAW-EB4 5904548 Shal_R0097 tRNA Shal_R0097 NC_010334.1 2832009 2832084 R tRNA-Gly complement(2832009..2832084) Shewanella halifaxensis HAW-EB4 5904382 Shal_R0098 tRNA Shal_R0098 NC_010334.1 2835535 2835625 R tRNA-Ser complement(2835535..2835625) Shewanella halifaxensis HAW-EB4 5904224 Shal_R0099 tRNA Shal_R0099 NC_010334.1 3032737 3032813 D tRNA-Pro 3032737..3032813 Shewanella halifaxensis HAW-EB4 5907018 Shal_R0104 tRNA Shal_R0104 NC_010334.1 3361919 3361994 R tRNA-His complement(3361919..3361994) Shewanella halifaxensis HAW-EB4 5903211 Shal_R0105 tRNA Shal_R0105 NC_010334.1 3362003 3362079 R tRNA-Arg complement(3362003..3362079) Shewanella halifaxensis HAW-EB4 5903001 Shal_R0106 tRNA Shal_R0106 NC_010334.1 3362143 3362219 R tRNA-Pro complement(3362143..3362219) Shewanella halifaxensis HAW-EB4 5902962 Shal_R0107 tRNA Shal_R0107 NC_010334.1 3846225 3846301 R tRNA-Met complement(3846225..3846301) Shewanella halifaxensis HAW-EB4 5904692 Shal_R0108 tRNA Shal_R0108 NC_010334.1 3846406 3846492 R tRNA-Leu complement(3846406..3846492) Shewanella halifaxensis HAW-EB4 5907022 Shal_R0109 tRNA Shal_R0109 NC_010334.1 3921576 3921650 R tRNA-Gln complement(3921576..3921650) Shewanella halifaxensis HAW-EB4 5905761 Shal_R0110 tRNA Shal_R0110 NC_010334.1 3921700 3921784 R tRNA-Leu complement(3921700..3921784) Shewanella halifaxensis HAW-EB4 5905688 Shal_R0111 tRNA Shal_R0111 NC_010334.1 3921831 3921905 R tRNA-Gln complement(3921831..3921905) Shewanella halifaxensis HAW-EB4 5905815 Shal_R0112 tRNA Shal_R0112 NC_010334.1 3921926 3922010 R tRNA-Leu complement(3921926..3922010) Shewanella halifaxensis HAW-EB4 5906142 Shal_R0113 tRNA Shal_R0113 NC_010334.1 3922107 3922181 R tRNA-Gln complement(3922107..3922181) Shewanella halifaxensis HAW-EB4 5905909 Shal_R0114 tRNA Shal_R0114 NC_010334.1 3922230 3922314 R tRNA-Leu complement(3922230..3922314) Shewanella halifaxensis HAW-EB4 5907047 Shal_R0115 tRNA Shal_R0115 NC_010334.1 3922484 3922560 R tRNA-Met complement(3922484..3922560) Shewanella halifaxensis HAW-EB4 5906973 Shal_R0116 tRNA Shal_R0116 NC_010334.1 3922566 3922640 R tRNA-Gln complement(3922566..3922640) Shewanella halifaxensis HAW-EB4 5906738 Shal_R0117 tRNA Shal_R0117 NC_010334.1 3922689 3922773 R tRNA-Leu complement(3922689..3922773) Shewanella halifaxensis HAW-EB4 5906590 Shal_R0118 tRNA Shal_R0118 NC_010334.1 3922881 3922957 R tRNA-Met complement(3922881..3922957) Shewanella halifaxensis HAW-EB4 5906486 Shal_R0119 tRNA Shal_R0119 NC_010334.1 3948863 3948939 R tRNA-Trp complement(3948863..3948939) Shewanella halifaxensis HAW-EB4 5906167 Shal_R0120 tRNA Shal_R0120 NC_010334.1 3949153 3949229 R tRNA-Trp complement(3949153..3949229) Shewanella halifaxensis HAW-EB4 5906129 Shal_R0123 tRNA Shal_R0123 NC_010334.1 3953971 3954046 R tRNA-Ala complement(3953971..3954046) Shewanella halifaxensis HAW-EB4 5906080 Shal_R0124 tRNA Shal_R0124 NC_010334.1 3954112 3954188 R tRNA-Ile complement(3954112..3954188) Shewanella halifaxensis HAW-EB4 5905397 Shal_R0126 tRNA Shal_R0126 NC_010334.1 3965768 3965843 D tRNA-Phe 3965768..3965843 Shewanella halifaxensis HAW-EB4 5904749 Shal_R0127 tRNA Shal_R0127 NC_010334.1 4438952 4439027 R tRNA-Gly complement(4438952..4439027) Shewanella halifaxensis HAW-EB4 5904665 Shal_R0128 tRNA Shal_R0128 NC_010334.1 4439042 4439117 R tRNA-Gly complement(4439042..4439117) Shewanella halifaxensis HAW-EB4 5904430 Shal_R0129 tRNA Shal_R0129 NC_010334.1 4439165 4439240 R tRNA-Gly complement(4439165..4439240) Shewanella halifaxensis HAW-EB4 5906536 Shal_R0130 tRNA Shal_R0130 NC_010334.1 4439288 4439363 R tRNA-Gly complement(4439288..4439363) Shewanella halifaxensis HAW-EB4 5904371 Shal_R0131 tRNA Shal_R0131 NC_010334.1 4439412 4439487 R tRNA-Gly complement(4439412..4439487) Shewanella halifaxensis HAW-EB4 5904328 Shal_R0133 tRNA Shal_R0133 NC_010334.1 4713188 4713263 R tRNA-Thr complement(4713188..4713263) Shewanella halifaxensis HAW-EB4 5902684 Shal_R0137 tRNA Shal_R0137 NC_010334.1 4785529 4785605 R tRNA-Pro complement(4785529..4785605) Shewanella halifaxensis HAW-EB4 5902777 Shal_R0138 tRNA Shal_R0138 NC_010334.1 4785664 4785740 R tRNA-Pro complement(4785664..4785740) Shewanella halifaxensis HAW-EB4 5906624 Shal_R0139 tRNA Shal_R0139 NC_010334.1 4785772 4785847 R tRNA-His complement(4785772..4785847) Shewanella halifaxensis HAW-EB4 5902698 Shal_R0140 tRNA Shal_R0140 NC_010334.1 4785887 4785963 R tRNA-Arg complement(4785887..4785963) Shewanella halifaxensis HAW-EB4 5902941 Shal_R0147 tRNA Shal_R0147 NC_010334.1 5043611 5043684 R tRNA-Gly complement(5043611..5043684) Shewanella halifaxensis HAW-EB4 5906763 Shal_R0148 tRNA Shal_R0148 NC_010334.1 5043720 5043804 R tRNA-Tyr complement(5043720..5043804) Shewanella halifaxensis HAW-EB4 5906764 Shal_R0149 tRNA Shal_R0149 NC_010334.1 5043812 5043887 R tRNA-Thr complement(5043812..5043887) Shewanella halifaxensis HAW-EB4 5906754 Shal_R0150 tRNA Shal_R0150 NC_010334.1 5047539 5047615 R tRNA-Asp complement(5047539..5047615) Shewanella halifaxensis HAW-EB4 5906559 Shal_R0153 tRNA Shal_R0153 NC_010334.1 5051244 5051319 R tRNA-Ala complement(5051244..5051319) Shewanella halifaxensis HAW-EB4 5906514 Shal_R0154 tRNA Shal_R0154 NC_010334.1 5051385 5051461 R tRNA-Ile complement(5051385..5051461) Shewanella halifaxensis HAW-EB4 5906439 Shal_R0001 rRNA Shal_R0001 NC_010334.1 42149 43683 D 16S ribosomal RNA 42149..43683 Shewanella halifaxensis HAW-EB4 5904561 Shal_R0002 rRNA Shal_R0002 NC_010334.1 44074 46968 D 23S ribosomal RNA 44074..46968 Shewanella halifaxensis HAW-EB4 5904562 Shal_R0003 rRNA Shal_R0003 NC_010334.1 47111 47226 D 5S ribosomal RNA 47111..47226 Shewanella halifaxensis HAW-EB4 5904900 Shal_R0005 rRNA Shal_R0005 NC_010334.1 546241 547775 D 16S ribosomal RNA 546241..547775 Shewanella halifaxensis HAW-EB4 5905940 Shal_R0008 rRNA Shal_R0008 NC_010334.1 548444 551338 D 23S ribosomal RNA 548444..551338 Shewanella halifaxensis HAW-EB4 5906370 Shal_R0009 rRNA Shal_R0009 NC_010334.1 551528 551643 D 5S ribosomal RNA 551528..551643 Shewanella halifaxensis HAW-EB4 5906359 Shal_R0013 rRNA Shal_R0013 NC_010334.1 710749 712283 D 16S ribosomal RNA 710749..712283 Shewanella halifaxensis HAW-EB4 5905270 Shal_R0014 rRNA Shal_R0014 NC_010334.1 712614 715507 D 23S ribosomal RNA 712614..715507 Shewanella halifaxensis HAW-EB4 5905271 Shal_R0015 rRNA Shal_R0015 NC_010334.1 715692 715807 D 5S ribosomal RNA 715692..715807 Shewanella halifaxensis HAW-EB4 5906955 Shal_R0100 rRNA Shal_R0100 NC_010334.1 3078051 3078166 R 5S ribosomal RNA complement(3078051..3078166) Shewanella halifaxensis HAW-EB4 5903299 Shal_R0101 rRNA Shal_R0101 NC_010334.1 3078309 3081203 R 23S ribosomal RNA complement(3078309..3081203) Shewanella halifaxensis HAW-EB4 5903300 Shal_R0102 rRNA Shal_R0102 NC_010334.1 3081594 3083128 R 16S ribosomal RNA complement(3081594..3083128) Shewanella halifaxensis HAW-EB4 5904296 Shal_R0121 rRNA Shal_R0121 NC_010334.1 3950394 3950509 R 5S ribosomal RNA complement(3950394..3950509) Shewanella halifaxensis HAW-EB4 5906116 Shal_R0122 rRNA Shal_R0122 NC_010334.1 3950701 3953595 R 23S ribosomal RNA complement(3950701..3953595) Shewanella halifaxensis HAW-EB4 5906083 Shal_R0125 rRNA Shal_R0125 NC_010334.1 3954264 3955798 R 16S ribosomal RNA complement(3954264..3955798) Shewanella halifaxensis HAW-EB4 5905367 Shal_R0132 rRNA Shal_R0132 NC_010334.1 4713052 4713167 R 5S ribosomal RNA complement(4713052..4713167) Shewanella halifaxensis HAW-EB4 5905739 Shal_R0134 rRNA Shal_R0134 NC_010334.1 4713334 4713449 R 5S ribosomal RNA complement(4713334..4713449) Shewanella halifaxensis HAW-EB4 5907030 Shal_R0135 rRNA Shal_R0135 NC_010334.1 4713592 4716486 R 23S ribosomal RNA complement(4713592..4716486) Shewanella halifaxensis HAW-EB4 5906530 Shal_R0136 rRNA Shal_R0136 NC_010334.1 4716878 4718414 R 16S ribosomal RNA complement(4716878..4718414) Shewanella halifaxensis HAW-EB4 5906015 Shal_R0142 rRNA Shal_R0142 NC_010334.1 4988817 4988932 R 5S ribosomal RNA complement(4988817..4988932) Shewanella halifaxensis HAW-EB4 5904299 Shal_R0143 rRNA Shal_R0143 NC_010334.1 4989124 4992018 R 23S ribosomal RNA complement(4989124..4992018) Shewanella halifaxensis HAW-EB4 5904300 Shal_R0144 rRNA Shal_R0144 NC_010334.1 4992409 4993943 R 16S ribosomal RNA complement(4992409..4993943) Shewanella halifaxensis HAW-EB4 5903303 Shal_R0145 rRNA Shal_R0145 NC_010334.1 4995607 4998501 R 23S ribosomal RNA complement(4995607..4998501) Shewanella halifaxensis HAW-EB4 5903277 Shal_R0146 rRNA Shal_R0146 NC_010334.1 4998892 5000426 R 16S ribosomal RNA complement(4998892..5000426) Shewanella halifaxensis HAW-EB4 5903236 Shal_R0151 rRNA Shal_R0151 NC_010334.1 5047716 5047831 R 5S ribosomal RNA complement(5047716..5047831) Shewanella halifaxensis HAW-EB4 5906560 Shal_R0152 rRNA Shal_R0152 NC_010334.1 5047974 5050868 R 23S ribosomal RNA complement(5047974..5050868) Shewanella halifaxensis HAW-EB4 5906527 Shal_R0155 rRNA Shal_R0155 NC_010334.1 5051537 5053071 R 16S ribosomal RNA complement(5051537..5053071) Shewanella halifaxensis HAW-EB4 5906434 Shal_R0156 rRNA Shal_R0156 NC_010334.1 5173773 5173888 R 5S ribosomal RNA complement(5173773..5173888) Shewanella halifaxensis HAW-EB4 5904316 Shal_R0157 rRNA Shal_R0157 NC_010334.1 5174080 5176974 R 23S ribosomal RNA complement(5174080..5176974) Shewanella halifaxensis HAW-EB4 5904276 Shal_R0158 rRNA Shal_R0158 NC_010334.1 5177365 5178899 R 16S ribosomal RNA complement(5177365..5178899) Shewanella halifaxensis HAW-EB4 5904238