-- dump date 20140620_063927 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001092133.1 127510936 4920637 111..1490 1 NC_009092.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1490 dnaA 4920637 dnaA Shewanella loihica PV-4 chromosomal replication initiation protein YP_001092133.1 111 D 323850 CDS YP_001092134.1 127510937 4921953 1511..2611 1 NC_009092.1 KEGG: son:SO0009 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2611 4921953 Shew_0002 Shewanella loihica PV-4 DNA polymerase III subunit beta YP_001092134.1 1511 D 323850 CDS YP_001092135.1 127510938 4923064 2684..3766 1 NC_009092.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3766 recF 4923064 recF Shewanella loihica PV-4 recombination protein F YP_001092135.1 2684 D 323850 CDS YP_001092136.1 127510939 4921660 3783..6200 1 NC_009092.1 KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6200 4921660 Shew_0004 Shewanella loihica PV-4 DNA gyrase subunit B YP_001092136.1 3783 D 323850 CDS YP_001092137.1 127510940 4923546 6322..7041 1 NC_009092.1 hypothetical protein 7041 4923546 Shew_0005 Shewanella loihica PV-4 hypothetical protein YP_001092137.1 6322 D 323850 CDS YP_001092138.1 127510941 4921837 complement(7075..7803) 1 NC_009092.1 PFAM: LamB/YcsF family protein; KEGG: reu:Reut_A0089 LamB/YcsF; LamB/YcsF family protein 7803 4921837 Shew_0006 Shewanella loihica PV-4 LamB/YcsF family protein YP_001092138.1 7075 R 323850 CDS YP_001092139.1 127510942 4922270 complement(7793..8725) 1 NC_009092.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: eca:ECA1352 putative allophanate hydrolase subunit 2; urea amidolyase-like protein 8725 4922270 Shew_0007 Shewanella loihica PV-4 urea amidolyase-like protein YP_001092139.1 7793 R 323850 CDS YP_001092140.1 127510943 4922900 complement(8722..9408) 1 NC_009092.1 PFAM: Allophanate hydrolase subunit 1; KEGG: sfv:SFV_0624 putative carboxylase; allophanate hydrolase subunit 1 9408 4922900 Shew_0008 Shewanella loihica PV-4 allophanate hydrolase subunit 1 YP_001092140.1 8722 R 323850 CDS YP_001092141.1 127510944 4923253 complement(9507..11576) 1 NC_009092.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 11576 glyS 4923253 glyS Shewanella loihica PV-4 glycyl-tRNA synthetase subunit beta YP_001092141.1 9507 R 323850 CDS YP_001092142.1 127510945 4923915 complement(11589..12494) 1 NC_009092.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 12494 glyQ 4923915 glyQ Shewanella loihica PV-4 glycyl-tRNA synthetase subunit alpha YP_001092142.1 11589 R 323850 CDS YP_001092143.1 127510946 4923999 12604..13173 1 NC_009092.1 KEGG: shm:Shewmr7_0010 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 13173 4923999 Shew_0011 Shewanella loihica PV-4 DNA-3-methyladenine glycosylase I YP_001092143.1 12604 D 323850 CDS YP_001092144.1 127510947 4923184 complement(13179..13859) 1 NC_009092.1 hypothetical protein 13859 4923184 Shew_0012 Shewanella loihica PV-4 hypothetical protein YP_001092144.1 13179 R 323850 CDS YP_001092145.1 127510948 4922171 complement(14072..17275) 1 NC_009092.1 PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: sfr:Sfri_0009 amidohydrolase; amidohydrolase 17275 4922171 Shew_0013 Shewanella loihica PV-4 amidohydrolase YP_001092145.1 14072 R 323850 CDS YP_001092146.1 127510949 4923044 complement(17578..18018) 1 NC_009092.1 KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein 18018 4923044 Shew_0014 Shewanella loihica PV-4 hypothetical protein YP_001092146.1 17578 R 323850 CDS YP_001092147.1 127510950 4921266 complement(18184..18429) 1 NC_009092.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 18429 4921266 Shew_0015 Shewanella loihica PV-4 sulfur transfer protein SirA YP_001092147.1 18184 R 323850 CDS YP_001092148.1 127510951 4922955 complement(18563..19027) 1 NC_009092.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vfi:VF1792 regulatory protein; ybaK/ebsC protein 19027 4922955 Shew_0016 Shewanella loihica PV-4 ybaK/ebsC protein YP_001092148.1 18563 R 323850 CDS YP_001092149.1 127510952 4921320 complement(19011..19499) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 19499 4921320 Shew_0017 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001092149.1 19011 R 323850 CDS YP_001092150.1 127510953 4920559 complement(19854..21017) 1 NC_009092.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 21017 fadA 4920559 fadA Shewanella loihica PV-4 3-ketoacyl-CoA thiolase YP_001092150.1 19854 R 323850 CDS YP_001092151.1 127510954 4920934 complement(21039..23189) 1 NC_009092.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 23189 fadB 4920934 fadB Shewanella loihica PV-4 multifunctional fatty acid oxidation complex subunit alpha YP_001092151.1 21039 R 323850 CDS YP_001092152.1 127510955 4920935 23495..24817 1 NC_009092.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 24817 4920935 Shew_0020 Shewanella loihica PV-4 proline dipeptidase YP_001092152.1 23495 D 323850 CDS YP_001092153.1 127510956 4921130 24832..25446 1 NC_009092.1 PFAM: protein of unknown function UPF0029; KEGG: she:Shewmr4_0020 protein of unknown function UPF0029; hypothetical protein 25446 4921130 Shew_0021 Shewanella loihica PV-4 hypothetical protein YP_001092153.1 24832 D 323850 CDS YP_001092154.1 127510957 4921721 25599..27056 1 NC_009092.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0019 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 27056 4921721 Shew_0022 Shewanella loihica PV-4 TrkH family potassium uptake protein YP_001092154.1 25599 D 323850 CDS YP_001092155.1 127510958 4922350 27056..27583 1 NC_009092.1 KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase 27583 4922350 Shew_0023 Shewanella loihica PV-4 protoporphyrinogen oxidase YP_001092155.1 27056 D 323850 CDS YP_001092156.1 127510959 4922601 complement(27605..27910) 1 NC_009092.1 PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_0021 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 27910 4922601 Shew_0024 Shewanella loihica PV-4 ArsR family transcriptional regulator YP_001092156.1 27605 R 323850 CDS YP_001092157.1 127510960 4923024 28183..28716 1 NC_009092.1 KEGG: sfr:Sfri_0019 protoporphyrinogen oxidase; protoporphyrinogen oxidase 28716 4923024 Shew_0025 Shewanella loihica PV-4 protoporphyrinogen oxidase YP_001092157.1 28183 D 323850 CDS YP_001092158.1 127510961 4923295 28832..29368 1 NC_009092.1 KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein 29368 4923295 Shew_0026 Shewanella loihica PV-4 hypothetical protein YP_001092158.1 28832 D 323850 CDS YP_001092159.1 127510962 4923914 complement(29381..30028) 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: son:SO4697 glutathione S-transferase; glutathione S-transferase domain-containing protein 30028 4923914 Shew_0027 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001092159.1 29381 R 323850 CDS YP_001092160.1 127510963 4920540 complement(30110..31009) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pen:PSEEN2735 transcriptional regulator, LysR family; LysR family transcriptional regulator 31009 4920540 Shew_0028 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092160.1 30110 R 323850 CDS YP_001092161.1 127510964 4920528 31239..31928 1 NC_009092.1 KEGG: shm:Shewmr7_3932 conserved hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 31928 4920528 Shew_0029 Shewanella loihica PV-4 3-methyladenine DNA glycosylase YP_001092161.1 31239 D 323850 CDS YP_001092162.1 127510965 4920515 complement(32076..32831) 1 NC_009092.1 KEGG: sfr:Sfri_1989 hypothetical protein; hypothetical protein 32831 4920515 Shew_0030 Shewanella loihica PV-4 hypothetical protein YP_001092162.1 32076 R 323850 CDS YP_001092163.1 127510966 4920504 33256..34416 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3837 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 34416 4920504 Shew_0031 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001092163.1 33256 D 323850 CDS YP_001092164.1 127510967 4920496 34426..37575 1 NC_009092.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3929 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 37575 4920496 Shew_0032 Shewanella loihica PV-4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001092164.1 34426 D 323850 CDS YP_001092165.1 127510968 4920489 37798..39639 1 NC_009092.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase; peptidase M14, carboxypeptidase A 39639 4920489 Shew_0033 Shewanella loihica PV-4 peptidase M14, carboxypeptidase A YP_001092165.1 37798 D 323850 CDS YP_001092166.1 127510969 4920480 complement(39701..40504) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0139 methyltransferase type 11; type 12 methyltransferase 40504 4920480 Shew_0034 Shewanella loihica PV-4 type 12 methyltransferase YP_001092166.1 39701 R 323850 CDS YP_001092167.1 127510970 4920469 40708..41478 1 NC_009092.1 KEGG: shm:Shewmr7_0138 lipoprotein, putative; putative lipoprotein 41478 4920469 Shew_0035 Shewanella loihica PV-4 putative lipoprotein YP_001092167.1 40708 D 323850 CDS YP_001092168.1 127510971 4920462 complement(41568..42389) 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; PA-phosphatase-like phosphoesterase 42389 4920462 Shew_0036 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001092168.1 41568 R 323850 CDS YP_001092169.1 127510972 4920455 complement(42482..43300) 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; PA-phosphatase-like phosphoesterase 43300 4920455 Shew_0037 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001092169.1 42482 R 323850 CDS YP_001092170.1 127510973 4920447 complement(43463..43756) 1 NC_009092.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: she:Shewmr4_0137 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 43756 4920447 Shew_0038 Shewanella loihica PV-4 excinuclease ABC subunit C YP_001092170.1 43463 R 323850 CDS YP_001092171.1 127510974 4920440 complement(43758..45818) 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO0144 protease II; oligopeptidase B 45818 4920440 Shew_0039 Shewanella loihica PV-4 oligopeptidase B YP_001092171.1 43758 R 323850 CDS YP_001092172.1 127510975 4920431 46327..46980 1 NC_009092.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 46980 ribB 4920431 ribB Shewanella loihica PV-4 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001092172.1 46327 D 323850 CDS YP_001092173.1 127510976 4920424 47293..50577 1 NC_009092.1 KEGG: she:Shewmr4_0134 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; Nitrate and nitrite sensing domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 50577 4920424 Shew_0041 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001092173.1 47293 D 323850 CDS YP_001092174.1 127510977 4920546 complement(50756..51280) 1 NC_009092.1 PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_0127 ferritin, Dps family protein; Ferritin, Dps family protein 51280 4920546 Shew_0042 Shewanella loihica PV-4 Ferritin, Dps family protein YP_001092174.1 50756 R 323850 CDS YP_001092175.1 127510978 4920621 51408..51596 1 NC_009092.1 KEGG: cps:CPS_4517 hypothetical protein; hypothetical protein 51596 4920621 Shew_0043 Shewanella loihica PV-4 hypothetical protein YP_001092175.1 51408 D 323850 CDS YP_001092176.1 127510979 4920904 51810..54920 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: sdn:Sden_3430 acriflavin resistance protein; acriflavin resistance protein 54920 4920904 Shew_0044 Shewanella loihica PV-4 acriflavin resistance protein YP_001092176.1 51810 D 323850 CDS YP_001092177.1 127510980 4921494 54917..55987 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sdn:Sden_3429 secretion protein HlyD; RND family efflux transporter MFP subunit 55987 4921494 Shew_0045 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001092177.1 54917 D 323850 CDS YP_001092178.1 127510981 4924345 56169..57416 1 NC_009092.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein 57416 4924345 Shew_0046 Shewanella loihica PV-4 molybdenum cofactor synthesis domain-containing protein YP_001092178.1 56169 D 323850 CDS YP_001092179.1 127510982 4922265 57427..58194 1 NC_009092.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 58194 4922265 Shew_0047 Shewanella loihica PV-4 molybdopterin biosynthesis protein MoeB YP_001092179.1 57427 D 323850 CDS YP_001092180.1 127510983 4922898 complement(58313..59020) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdn:Sden_0827 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 59020 4922898 Shew_0048 Shewanella loihica PV-4 short chain dehydrogenase YP_001092180.1 58313 R 323850 CDS YP_001092181.1 127510984 4923371 59401..60972 1 NC_009092.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vpa:VP1905 transporter, BCCT family; choline/carnitine/betaine transporter 60972 4923371 Shew_0049 Shewanella loihica PV-4 choline/carnitine/betaine transporter YP_001092181.1 59401 D 323850 CDS YP_001092182.1 127510985 4923584 complement(61076..61795) 1 NC_009092.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 61795 4923584 Shew_0050 Shewanella loihica PV-4 DNA polymerase III subunit epsilon YP_001092182.1 61076 R 323850 CDS YP_001092183.1 127510986 4924400 complement(61803..63692) 1 NC_009092.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: vpa:VP1902 CBS domain-containing protein; cyclic nucleotide-binding protein 63692 4924400 Shew_0051 Shewanella loihica PV-4 cyclic nucleotide-binding protein YP_001092183.1 61803 R 323850 CDS YP_001092184.1 127510987 4922606 complement(63788..64693) 1 NC_009092.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_3713 DNA binding domain, excisionase family; DNA binding domain-containing protein 64693 4922606 Shew_0052 Shewanella loihica PV-4 DNA binding domain-containing protein YP_001092184.1 63788 R 323850 CDS YP_001092185.1 127510988 4923686 complement(64717..65562) 1 NC_009092.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: she:Shewmr4_3714 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 65562 4923686 Shew_0053 Shewanella loihica PV-4 formate dehydrogenase subunit FdhD YP_001092185.1 64717 R 323850 CDS YP_001092186.1 127510989 4921275 65858..66328 1 NC_009092.1 KEGG: sfr:Sfri_0052 hypothetical protein; hypothetical protein 66328 4921275 Shew_0054 Shewanella loihica PV-4 hypothetical protein YP_001092186.1 65858 D 323850 CDS YP_001092187.1 127510990 4922332 66328..66918 1 NC_009092.1 KEGG: son:SO4505 hypothetical protein; hypothetical protein 66918 4922332 Shew_0055 Shewanella loihica PV-4 hypothetical protein YP_001092187.1 66328 D 323850 CDS YP_001092188.1 127510991 4922656 67100..68776 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 68776 4922656 Shew_0056 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092188.1 67100 D 323850 CDS YP_001092189.1 127510992 4923694 68787..69452 1 NC_009092.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative; cytoplasmic chaperone TorD family protein 69452 4923694 Shew_0057 Shewanella loihica PV-4 cytoplasmic chaperone TorD family protein YP_001092189.1 68787 D 323850 CDS YP_001092190.1 127510993 4920428 69620..69820 1 NC_009092.1 KEGG: she:Shewmr4_3719 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 69820 4920428 Shew_0058 Shewanella loihica PV-4 twin-arginine translocation pathway signal YP_001092190.1 69620 D 323850 CDS YP_001092191.1 127510994 4921053 69872..72721 1 NC_009092.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfr:Sfri_0057 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 72721 4921053 Shew_0059 Shewanella loihica PV-4 molybdopterin oxidoreductase YP_001092191.1 69872 D 323850 CDS YP_001092192.1 127510995 4921927 72749..73339 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3792 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 73339 4921927 Shew_0060 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092192.1 72749 D 323850 CDS YP_001092193.1 127510996 4923146 73390..74397 1 NC_009092.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma 74397 4923146 Shew_0061 Shewanella loihica PV-4 formate dehydrogenase subunit gamma YP_001092193.1 73390 D 323850 CDS YP_001092194.1 127510997 4921429 74889..75086 1 NC_009092.1 KEGG: son:SO4512 hypothetical protein; hypothetical protein 75086 4921429 Shew_0062 Shewanella loihica PV-4 hypothetical protein YP_001092194.1 74889 D 323850 CDS YP_001092195.1 127510998 4921577 75104..77959 1 NC_009092.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3795 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 77959 4921577 Shew_0063 Shewanella loihica PV-4 molybdopterin oxidoreductase YP_001092195.1 75104 D 323850 CDS YP_001092196.1 127510999 4922098 77980..78549 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3725 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 78549 4922098 Shew_0064 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092196.1 77980 D 323850 CDS YP_001092197.1 127511000 4923003 78618..79610 1 NC_009092.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_3797 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 79610 4923003 Shew_0065 Shewanella loihica PV-4 formate dehydrogenase subunit gamma YP_001092197.1 78618 D 323850 CDS YP_001092198.1 127511001 4922870 79885..80250 1 NC_009092.1 hypothetical protein 80250 4922870 Shew_0066 Shewanella loihica PV-4 hypothetical protein YP_001092198.1 79885 D 323850 CDS YP_001092199.1 127511002 4921457 complement(80252..80761) 1 NC_009092.1 KEGG: sfr:Sfri_3099 methylation site containing protein; hypothetical protein 80761 4921457 Shew_0067 Shewanella loihica PV-4 hypothetical protein YP_001092199.1 80252 R 323850 CDS YP_001092200.1 127511003 4921806 80976..82355 1 NC_009092.1 PFAM: fumarate lyase; KEGG: pen:PSEEN1085 fumarate hydratase class II; fumarate lyase 82355 4921806 Shew_0068 Shewanella loihica PV-4 fumarate lyase YP_001092200.1 80976 D 323850 CDS YP_001092201.1 127511004 4922715 complement(82400..83503) 1 NC_009092.1 KEGG: sdn:Sden_0559 hypothetical protein; hypothetical protein 83503 4922715 Shew_0069 Shewanella loihica PV-4 hypothetical protein YP_001092201.1 82400 R 323850 CDS YP_001092202.1 127511005 4923002 complement(83682..84845) 1 NC_009092.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sfr:Sfri_0073 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 84845 4923002 Shew_0070 Shewanella loihica PV-4 iron-containing alcohol dehydrogenase YP_001092202.1 83682 R 323850 CDS YP_001092203.1 127511006 4923522 85050..85916 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: sfr:Sfri_0074 transcriptional regulator, AraC family protein; AraC family transcriptional regulator 85916 4923522 Shew_0071 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001092203.1 85050 D 323850 CDS YP_001092204.1 127511007 4922370 complement(85924..86445) 1 NC_009092.1 hypothetical protein 86445 4922370 Shew_0072 Shewanella loihica PV-4 hypothetical protein YP_001092204.1 85924 R 323850 CDS YP_001092205.1 127511008 4922099 86819..88162 1 NC_009092.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 88162 4922099 Shew_0073 Shewanella loihica PV-4 coproporphyrinogen III oxidase YP_001092205.1 86819 D 323850 CDS YP_001092206.1 127511009 4923994 complement(88882..89097) 1 NC_009092.1 hypothetical protein 89097 4923994 Shew_0075 Shewanella loihica PV-4 hypothetical protein YP_001092206.1 88882 R 323850 CDS YP_001092207.1 127511010 4921408 89390..89677 1 NC_009092.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nar:Saro_1420 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 89677 4921408 Shew_0076 Shewanella loihica PV-4 antibiotic biosynthesis monooxygenase YP_001092207.1 89390 D 323850 CDS YP_001092208.1 127511011 4922417 89699..90652 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0961 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 90652 4922417 Shew_0077 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001092208.1 89699 D 323850 CDS YP_001092209.1 127511012 4921640 90789..91649 1 NC_009092.1 PFAM: PfkB domain protein; KEGG: she:Shewmr4_0267 PfkB domain protein; ribokinase-like domain-containing protein 91649 4921640 Shew_0078 Shewanella loihica PV-4 ribokinase-like domain-containing protein YP_001092209.1 90789 D 323850 CDS YP_001092210.1 127511013 4923960 complement(91853..93310) 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: cps:CPS_0147 hydrolase, alpha/beta fold family; TAP domain-containing protein 93310 4923960 Shew_0079 Shewanella loihica PV-4 TAP domain-containing protein YP_001092210.1 91853 R 323850 CDS YP_001092211.1 127511014 4920530 complement(93574..94866) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VPA1277 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 94866 4920530 Shew_0080 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001092211.1 93574 R 323850 CDS YP_001092212.1 127511015 4920550 complement(94873..95607) 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_04118 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator 95607 4920550 Shew_0081 Shewanella loihica PV-4 two component transcriptional regulator YP_001092212.1 94873 R 323850 CDS YP_001092213.1 127511016 4920417 complement(95660..96109) 1 NC_009092.1 KEGG: sdn:Sden_0560 hypothetical protein; hypothetical protein 96109 4920417 Shew_0082 Shewanella loihica PV-4 hypothetical protein YP_001092213.1 95660 R 323850 CDS YP_001092214.1 127511017 4920442 96244..96936 1 NC_009092.1 PFAM: 3-alpha; MOSC domain containing protein; KEGG: she:Shewmr4_0269 MOSC domain containing protein; MOSC domain-containing protein 96936 4920442 Shew_0083 Shewanella loihica PV-4 MOSC domain-containing protein YP_001092214.1 96244 D 323850 CDS YP_001092215.1 127511018 4920499 97018..97338 1 NC_009092.1 KEGG: sfr:Sfri_0079 hypothetical protein; hypothetical protein 97338 4920499 Shew_0084 Shewanella loihica PV-4 hypothetical protein YP_001092215.1 97018 D 323850 CDS YP_001092216.1 127511019 4920484 complement(97414..99330) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3750 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 99330 4920484 Shew_0085 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001092216.1 97414 R 323850 CDS YP_001092217.1 127511020 4920526 complement(99591..101240) 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase 101240 4920526 Shew_0086 Shewanella loihica PV-4 electron-transferring-flavoprotein dehydrogenase YP_001092217.1 99591 R 323850 CDS YP_001092218.1 127511021 4920648 101556..102569 1 NC_009092.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 102569 moaA 4920648 moaA Shewanella loihica PV-4 molybdenum cofactor biosynthesis protein A YP_001092218.1 101556 D 323850 CDS YP_001092219.1 127511022 4923538 102681..103211 1 NC_009092.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pat:Patl_2158 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B 103211 4923538 Shew_0088 Shewanella loihica PV-4 molybdenum cofactor biosynthesis protein B YP_001092219.1 102681 D 323850 CDS YP_001092220.1 127511023 4923334 103204..103680 1 NC_009092.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 103680 moaC 4923334 moaC Shewanella loihica PV-4 molybdenum cofactor biosynthesis protein MoaC YP_001092220.1 103204 D 323850 CDS YP_001092221.1 127511024 4923760 103730..103981 1 NC_009092.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: shm:Shewmr7_3746 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 103981 4923760 Shew_0090 Shewanella loihica PV-4 molybdopterin converting factor subunit 1 YP_001092221.1 103730 D 323850 CDS YP_001092222.1 127511025 4923236 103983..104450 1 NC_009092.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE 104450 4923236 Shew_0091 Shewanella loihica PV-4 molybdopterin biosynthesis MoaE YP_001092222.1 103983 D 323850 CDS YP_001092223.1 127511026 4923009 104484..105308 1 NC_009092.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: shm:Shewmr7_3744 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 105308 4923009 Shew_0092 Shewanella loihica PV-4 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001092223.1 104484 D 323850 CDS YP_001092224.1 127511027 4922613 105308..105988 1 NC_009092.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3743 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 105988 4922613 Shew_0093 Shewanella loihica PV-4 molybdate ABC transporter inner membrane subunit YP_001092224.1 105308 D 323850 CDS YP_001092225.1 127511028 4922116 105969..107078 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3742 ABC transporter-related protein; ABC transporter-like protein 107078 4922116 Shew_0094 Shewanella loihica PV-4 ABC transporter-like protein YP_001092225.1 105969 D 323850 CDS YP_001092226.1 127511029 4921132 107182..107541 1 NC_009092.1 PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; conserved hypothetical protein 156; KEGG: vpa:VPA0694 hypothetical protein; hypothetical protein 107541 4921132 Shew_0095 Shewanella loihica PV-4 hypothetical protein YP_001092226.1 107182 D 323850 CDS YP_001092227.1 127511030 4921540 107692..108228 1 NC_009092.1 KEGG: shm:Shewmr7_3741 hypothetical protein; hypothetical protein 108228 4921540 Shew_0096 Shewanella loihica PV-4 hypothetical protein YP_001092227.1 107692 D 323850 CDS YP_001092228.1 127511031 4921957 108232..108909 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3740 two component transcriptional regulator, winged helix family; two component transcriptional regulator 108909 4921957 Shew_0097 Shewanella loihica PV-4 two component transcriptional regulator YP_001092228.1 108232 D 323850 CDS YP_001092229.1 127511032 4923470 108959..110218 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 110218 4923470 Shew_0098 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001092229.1 108959 D 323850 CDS YP_001092230.1 127511033 4923300 110231..110905 1 NC_009092.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: she:Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein 110905 4923300 Shew_0099 Shewanella loihica PV-4 pseudouridine synthase Rlu family protein YP_001092230.1 110231 D 323850 CDS YP_001092231.1 127511034 4920553 110927..111094 1 NC_009092.1 PFAM: protein of unknown function UPF0057; KEGG: shm:Shewmr7_3736 protein of unknown function UPF0057; hypothetical protein 111094 4920553 Shew_0100 Shewanella loihica PV-4 hypothetical protein YP_001092231.1 110927 D 323850 CDS YP_001092232.1 127511035 4920820 111320..111721 1 NC_009092.1 PFAM: Endoribonuclease L-PSP; KEGG: bha:BH3085 hypothetical protein; endoribonuclease L-PSP 111721 4920820 Shew_0101 Shewanella loihica PV-4 endoribonuclease L-PSP YP_001092232.1 111320 D 323850 CDS YP_001092233.1 127511036 4923001 111823..111978 1 NC_009092.1 KEGG: shm:Shewmr7_3732 hypothetical protein; hypothetical protein 111978 4923001 Shew_0102 Shewanella loihica PV-4 hypothetical protein YP_001092233.1 111823 D 323850 CDS YP_001092234.1 127511037 4923083 112185..113408 1 NC_009092.1 PFAM: sodium/glutamate symporter; KEGG: she:Shewmr4_1482 sodium/glutamate symporter; sodium/glutamate symporter 113408 4923083 Shew_0103 Shewanella loihica PV-4 sodium/glutamate symporter YP_001092234.1 112185 D 323850 CDS YP_001092235.1 127511038 4923682 complement(113461..113712) 1 NC_009092.1 PFAM: protein of unknown function DUF333; KEGG: shm:Shewmr7_0123 protein of unknown function DUF333; hypothetical protein 113712 4923682 Shew_0104 Shewanella loihica PV-4 hypothetical protein YP_001092235.1 113461 R 323850 CDS YP_001092236.1 127511039 4920542 complement(113788..116325) 1 NC_009092.1 SMART: peptidase M14, carboxypeptidase A; KEGG: pat:Patl_4232 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 116325 4920542 Shew_0105 Shewanella loihica PV-4 peptidase M14, carboxypeptidase A YP_001092236.1 113788 R 323850 CDS YP_001092237.1 127511040 4920517 116533..117111 1 NC_009092.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 117111 4920517 Shew_0106 Shewanella loihica PV-4 putative DNA uptake protein YP_001092237.1 116533 D 323850 CDS YP_001092238.1 127511041 4920449 complement(117145..118491) 1 NC_009092.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein 118491 4920449 Shew_0107 Shewanella loihica PV-4 MATE efflux family protein YP_001092238.1 117145 R 323850 CDS YP_001092239.1 127511042 4921203 118514..119560 1 NC_009092.1 PFAM: polysaccharide deacetylase; KEGG: shm:Shewmr7_3874 polysaccharide deacetylase; polysaccharide deacetylase 119560 4921203 Shew_0108 Shewanella loihica PV-4 polysaccharide deacetylase YP_001092239.1 118514 D 323850 CDS YP_001092240.1 127511043 4923008 complement(119619..120665) 1 NC_009092.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: xcb:XC_2323 glutamate methylesterase; response regulator receiver modulated CheB methylesterase 120665 4923008 Shew_0109 Shewanella loihica PV-4 response regulator receiver modulated CheB methylesterase YP_001092240.1 119619 R 323850 CDS YP_001092241.1 127511044 4920538 complement(120694..121560) 1 NC_009092.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: sde:Sde_3104 biotin biosynthesis protein BioC; chemotaxis protein CheR 121560 4920538 Shew_0110 Shewanella loihica PV-4 chemotaxis protein CheR YP_001092241.1 120694 R 323850 CDS YP_001092242.1 127511045 4920842 complement(121633..124227) 1 NC_009092.1 PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: cvi:CV3438 probable methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 124227 4920842 Shew_0111 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001092242.1 121633 R 323850 CDS YP_001092243.1 127511046 4921684 complement(124250..124807) 1 NC_009092.1 PFAM: CheW domain protein; KEGG: sde:Sde_3106 biotin synthase; CheW protein 124807 4921684 Shew_0112 Shewanella loihica PV-4 CheW protein YP_001092243.1 124250 R 323850 CDS YP_001092244.1 127511047 4921465 complement(124836..126896) 1 NC_009092.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: tcx:Tcr_1612 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase 126896 4921465 Shew_0113 Shewanella loihica PV-4 CheA signal transduction histidine kinase YP_001092244.1 124836 R 323850 CDS YP_001092245.1 127511048 4922592 complement(126918..127280) 1 NC_009092.1 PFAM: response regulator receiver; KEGG: hch:HCH_00454 FOG: CheY-like receiver; response regulator receiver protein 127280 4922592 Shew_0114 Shewanella loihica PV-4 response regulator receiver protein YP_001092245.1 126918 R 323850 CDS YP_001092246.1 127511049 4923254 complement(127277..127576) 1 NC_009092.1 hypothetical protein 127576 4923254 Shew_0115 Shewanella loihica PV-4 hypothetical protein YP_001092246.1 127277 R 323850 CDS YP_001092247.1 127511050 4923528 complement(127740..128375) 1 NC_009092.1 PFAM: electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC 128375 4923528 Shew_0116 Shewanella loihica PV-4 electron transport protein SCO1/SenC YP_001092247.1 127740 R 323850 CDS YP_001092248.1 127511051 4923484 complement(128380..129282) 1 NC_009092.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 129282 4923484 Shew_0117 Shewanella loihica PV-4 protoheme IX farnesyltransferase YP_001092248.1 128380 R 323850 CDS YP_001092249.1 127511052 4923531 complement(129295..130278) 1 NC_009092.1 PFAM: cytochrome oxidase assembly; KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly 130278 4923531 Shew_0118 Shewanella loihica PV-4 cytochrome oxidase assembly YP_001092249.1 129295 R 323850 CDS YP_001092250.1 127511053 4923998 complement(130278..130829) 1 NC_009092.1 KEGG: sfr:Sfri_0252 hypothetical protein; hypothetical protein 130829 4923998 Shew_0119 Shewanella loihica PV-4 hypothetical protein YP_001092250.1 130278 R 323850 CDS YP_001092251.1 127511054 4924027 complement(131002..131757) 1 NC_009092.1 KEGG: shm:Shewmr7_3869 hypothetical protein; hypothetical protein 131757 4924027 Shew_0120 Shewanella loihica PV-4 hypothetical protein YP_001092251.1 131002 R 323850 CDS YP_001092252.1 127511055 4920544 131798..131974 1 NC_009092.1 KEGG: sfr:Sfri_0254 hypothetical protein; hypothetical protein 131974 4920544 Shew_0121 Shewanella loihica PV-4 hypothetical protein YP_001092252.1 131798 D 323850 CDS YP_001092253.1 127511056 4920522 complement(131990..132865) 1 NC_009092.1 PFAM: cytochrome c oxidase, subunit III; KEGG: shm:Shewmr7_3867 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 132865 4920522 Shew_0122 Shewanella loihica PV-4 cytochrome c oxidase subunit III YP_001092253.1 131990 R 323850 CDS YP_001092254.1 127511057 4920460 complement(132862..133431) 1 NC_009092.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 133431 4920460 Shew_0123 Shewanella loihica PV-4 cytochrome C oxidase assembly protein YP_001092254.1 132862 R 323850 CDS YP_001092255.1 127511058 4920478 complement(133433..135043) 1 NC_009092.1 PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3865 cytochrome-c oxidase; cytochrome-c oxidase 135043 4920478 Shew_0124 Shewanella loihica PV-4 cytochrome-c oxidase YP_001092255.1 133433 R 323850 CDS YP_001092256.1 127511059 4921195 complement(135053..136618) 1 NC_009092.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: shm:Shewmr7_3864 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 136618 4921195 Shew_0125 Shewanella loihica PV-4 cytochrome c oxidase subunit II YP_001092256.1 135053 R 323850 CDS YP_001092257.1 127511060 4920434 complement(137017..137526) 1 NC_009092.1 KEGG: sfr:Sfri_0259 hypothetical protein; hypothetical protein 137526 4920434 Shew_0126 Shewanella loihica PV-4 hypothetical protein YP_001092257.1 137017 R 323850 CDS YP_001092258.1 127511061 4920491 complement(137523..138140) 1 NC_009092.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 138140 4920491 Shew_0127 Shewanella loihica PV-4 LexA repressor YP_001092258.1 137523 R 323850 CDS YP_001092259.1 127511062 4923587 complement(138259..138933) 1 NC_009092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0162 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 138933 4923587 Shew_0128 Shewanella loihica PV-4 HAD family hydrolase YP_001092259.1 138259 R 323850 CDS YP_001092260.1 127511063 4920426 139031..139576 1 NC_009092.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 139576 nudE 4920426 nudE Shewanella loihica PV-4 ADP-ribose diphosphatase NudE YP_001092260.1 139031 D 323850 CDS YP_001092261.1 127511064 4922781 139630..140442 1 NC_009092.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sfr:Sfri_0118 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 140442 4922781 Shew_0130 Shewanella loihica PV-4 3'(2'),5'-bisphosphate nucleotidase YP_001092261.1 139630 D 323850 CDS YP_001092262.1 127511065 4922980 140435..140890 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0171 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 140890 4922980 Shew_0131 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001092262.1 140435 D 323850 CDS YP_001092263.1 127511066 4920464 140998..141654 1 NC_009092.1 KEGG: she:Shewmr4_0172 transcriptional regulator, TetR family; TetR family transcriptional regulator 141654 4920464 Shew_0132 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001092263.1 140998 D 323850 CDS YP_001092264.1 127511067 4922055 141645..143507 1 NC_009092.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase 143507 4922055 Shew_0133 Shewanella loihica PV-4 phospholipid/glycerol acyltransferase YP_001092264.1 141645 D 323850 CDS YP_001092265.1 127511068 4920508 complement(143555..144673) 1 NC_009092.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 144673 4920508 Shew_0134 Shewanella loihica PV-4 tRNA 2-selenouridine synthase YP_001092265.1 143555 R 323850 CDS YP_001092266.1 127511069 4922151 complement(144673..145716) 1 NC_009092.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 145716 4922151 Shew_0135 Shewanella loihica PV-4 selenophosphate synthetase YP_001092266.1 144673 R 323850 CDS YP_001092267.1 127511070 4920534 complement(145879..146985) 1 NC_009092.1 PFAM: fatty acid desaturase; KEGG: she:Shewmr4_0176 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase 146985 4920534 Shew_0136 Shewanella loihica PV-4 stearoyl-CoA 9-desaturase YP_001092267.1 145879 R 323850 CDS YP_001092268.1 127511071 4923966 147125..147742 1 NC_009092.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 147742 4923966 Shew_0137 Shewanella loihica PV-4 DNA-binding transcriptional repressor FabR YP_001092268.1 147125 D 323850 CDS YP_001092269.1 127511072 4920446 complement(147823..148920) 1 NC_009092.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 148920 4920446 Shew_0138 Shewanella loihica PV-4 tRNA (uracil-5-)-methyltransferase YP_001092269.1 147823 R 323850 CDS YP_001092270.1 127511073 4922355 149128..149928 1 NC_009092.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 149928 4922355 Shew_0139 Shewanella loihica PV-4 glutamate racemase YP_001092270.1 149128 D 323850 CDS YP_001092271.1 127511074 4923780 complement(149997..150455) 1 NC_009092.1 PFAM: RNP-1 like RNA-binding protein; KEGG: shm:Shewmr7_0175 RNP-1 like RNA-binding protein; RNP-1-like RNA-binding protein 150455 4923780 Shew_0140 Shewanella loihica PV-4 RNP-1-like RNA-binding protein YP_001092271.1 149997 R 323850 CDS YP_001092272.1 127511075 4923978 157198..158238 1 NC_009092.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 158238 murB 4923978 murB Shewanella loihica PV-4 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001092272.1 157198 D 323850 CDS YP_001092273.1 127511076 4921480 158231..159190 1 NC_009092.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 159190 4921480 Shew_0142 Shewanella loihica PV-4 biotin--protein ligase YP_001092273.1 158231 D 323850 CDS YP_001092274.1 127511077 4920421 complement(159254..160204) 1 NC_009092.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 160204 4920421 Shew_0143 Shewanella loihica PV-4 pantothenate kinase YP_001092274.1 159254 R 323850 CDS YP_001092275.1 127511078 4923981 160907..162091 1 NC_009092.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 162091 4923981 Shew_0144 Shewanella loihica PV-4 elongation factor Tu YP_001092275.1 160907 D 323850 CDS YP_001092276.1 127511079 4921431 162374..162745 1 NC_009092.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 162745 secE 4921431 secE Shewanella loihica PV-4 preprotein translocase subunit SecE YP_001092276.1 162374 D 323850 CDS YP_001092277.1 127511080 4921700 162755..163297 1 NC_009092.1 KEGG: sfr:Sfri_0136 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor 163297 4921700 Shew_0146 Shewanella loihica PV-4 NusG antitermination factor YP_001092277.1 162755 D 323850 CDS YP_001092278.1 127511081 4922205 163424..163852 1 NC_009092.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 163852 rplK 4922205 rplK Shewanella loihica PV-4 50S ribosomal protein L11 YP_001092278.1 163424 D 323850 CDS YP_001092279.1 127511082 4922431 163857..164558 1 NC_009092.1 PFAM: ribosomal protein L1; KEGG: shm:Shewmr7_0184 ribosomal protein L1; 50S ribosomal protein L1 164558 4922431 Shew_0148 Shewanella loihica PV-4 50S ribosomal protein L1 YP_001092279.1 163857 D 323850 CDS YP_001092280.1 127511083 4922639 164826..165323 1 NC_009092.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 165323 rplJ 4922639 rplJ Shewanella loihica PV-4 50S ribosomal protein L10 YP_001092280.1 164826 D 323850 CDS YP_001092281.1 127511084 4922904 165377..165745 1 NC_009092.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12-like; KEGG: she:Shewmr4_0191 ribosomal protein L7/L12; 50S ribosomal protein L7/L12 165745 4922904 Shew_0150 Shewanella loihica PV-4 50S ribosomal protein L7/L12 YP_001092281.1 165377 D 323850 CDS YP_001092282.1 127511085 4923303 165984..170015 1 NC_009092.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 170015 rpoB 4923303 rpoB Shewanella loihica PV-4 DNA-directed RNA polymerase subunit beta YP_001092282.1 165984 D 323850 CDS YP_001092283.1 127511086 4923304 170098..174312 1 NC_009092.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 174312 4923304 Shew_0152 Shewanella loihica PV-4 DNA-directed RNA polymerase subunit beta' YP_001092283.1 170098 D 323850 CDS YP_001092284.1 127511087 4923607 174503..174877 1 NC_009092.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 174877 rpsL 4923607 rpsL Shewanella loihica PV-4 30S ribosomal protein S12 YP_001092284.1 174503 D 323850 CDS YP_001092285.1 127511088 4923754 174958..175428 1 NC_009092.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 175428 4923754 Shew_0154 Shewanella loihica PV-4 30S ribosomal protein S7 YP_001092285.1 174958 D 323850 CDS YP_001092286.1 127511089 4924225 175504..177600 1 NC_009092.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 177600 4924225 Shew_0155 Shewanella loihica PV-4 elongation factor G YP_001092286.1 175504 D 323850 CDS YP_001092287.1 127511090 4920567 177680..178864 1 NC_009092.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 178864 4920567 Shew_0156 Shewanella loihica PV-4 elongation factor Tu YP_001092287.1 177680 D 323850 CDS YP_001092288.1 127511091 4920610 179226..179537 1 NC_009092.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 179537 rpsJ 4920610 rpsJ Shewanella loihica PV-4 30S ribosomal protein S10 YP_001092288.1 179226 D 323850 CDS YP_001092289.1 127511092 4920628 179565..180203 1 NC_009092.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 180203 rplC 4920628 rplC Shewanella loihica PV-4 50S ribosomal protein L3 YP_001092289.1 179565 D 323850 CDS YP_001092290.1 127511093 4920649 180220..180825 1 NC_009092.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 180825 rplD 4920649 rplD Shewanella loihica PV-4 50S ribosomal protein L4 YP_001092290.1 180220 D 323850 CDS YP_001092291.1 127511094 4920650 180822..181121 1 NC_009092.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 181121 rplW 4920650 rplW Shewanella loihica PV-4 50S ribosomal protein L23 YP_001092291.1 180822 D 323850 CDS YP_001092292.1 127511095 4920665 181138..181965 1 NC_009092.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 181965 rplB 4920665 rplB Shewanella loihica PV-4 50S ribosomal protein L2 YP_001092292.1 181138 D 323850 CDS YP_001092293.1 127511096 4920673 181977..182255 1 NC_009092.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 182255 rpsS 4920673 rpsS Shewanella loihica PV-4 30S ribosomal protein S19 YP_001092293.1 181977 D 323850 CDS YP_001092294.1 127511097 4920704 182271..182603 1 NC_009092.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 182603 rplV 4920704 rplV Shewanella loihica PV-4 50S ribosomal protein L22 YP_001092294.1 182271 D 323850 CDS YP_001092295.1 127511098 4920763 182613..183302 1 NC_009092.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 183302 rpsC 4920763 rpsC Shewanella loihica PV-4 30S ribosomal protein S3 YP_001092295.1 182613 D 323850 CDS YP_001092296.1 127511099 4920780 183314..183724 1 NC_009092.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 183724 rplP 4920780 rplP Shewanella loihica PV-4 50S ribosomal protein L16 YP_001092296.1 183314 D 323850 CDS YP_001092297.1 127511100 4920841 183724..183915 1 NC_009092.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 183915 4920841 Shew_0166 Shewanella loihica PV-4 50S ribosomal protein L29 YP_001092297.1 183724 D 323850 CDS YP_001092298.1 127511101 4920870 183915..184163 1 NC_009092.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 184163 rpsQ 4920870 rpsQ Shewanella loihica PV-4 30S ribosomal protein S17 YP_001092298.1 183915 D 323850 CDS YP_001092299.1 127511102 4920871 184343..184711 1 NC_009092.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 184711 rplN 4920871 rplN Shewanella loihica PV-4 50S ribosomal protein L14 YP_001092299.1 184343 D 323850 CDS YP_001092300.1 127511103 4920874 184723..185037 1 NC_009092.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 185037 rplX 4920874 rplX Shewanella loihica PV-4 50S ribosomal protein L24 YP_001092300.1 184723 D 323850 CDS YP_001092301.1 127511104 4920877 185050..185589 1 NC_009092.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 185589 rplE 4920877 rplE Shewanella loihica PV-4 50S ribosomal protein L5 YP_001092301.1 185050 D 323850 CDS YP_001092302.1 127511105 4920879 185600..185905 1 NC_009092.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 185905 rpsN 4920879 rpsN Shewanella loihica PV-4 30S ribosomal protein S14 YP_001092302.1 185600 D 323850 CDS YP_001092303.1 127511106 4920840 185929..186321 1 NC_009092.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 186321 rpsH 4920840 rpsH Shewanella loihica PV-4 30S ribosomal protein S8 YP_001092303.1 185929 D 323850 CDS YP_001092304.1 127511107 4920905 186332..186862 1 NC_009092.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 186862 rplF 4920905 rplF Shewanella loihica PV-4 50S ribosomal protein L6 YP_001092304.1 186332 D 323850 CDS YP_001092305.1 127511108 4920907 186873..187223 1 NC_009092.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 187223 rplR 4920907 rplR Shewanella loihica PV-4 50S ribosomal protein L18 YP_001092305.1 186873 D 323850 CDS YP_001092306.1 127511109 4920932 187237..187740 1 NC_009092.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 187740 rpsE 4920932 rpsE Shewanella loihica PV-4 30S ribosomal protein S5 YP_001092306.1 187237 D 323850 CDS YP_001092307.1 127511110 4920933 187746..187928 1 NC_009092.1 PFAM: ribosomal protein L30; KEGG: she:Shewmr4_0217 ribosomal protein L30; 50S ribosomal protein L30 187928 4920933 Shew_0176 Shewanella loihica PV-4 50S ribosomal protein L30 YP_001092307.1 187746 D 323850 CDS YP_001092308.1 127511111 4920937 187932..188366 1 NC_009092.1 late assembly protein; 50S ribosomal protein L15 188366 rplO 4920937 rplO Shewanella loihica PV-4 50S ribosomal protein L15 YP_001092308.1 187932 D 323850 CDS YP_001092309.1 127511112 4920939 188374..189714 1 NC_009092.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 189714 secY 4920939 secY Shewanella loihica PV-4 preprotein translocase subunit SecY YP_001092309.1 188374 D 323850 CDS YP_001092310.1 127511113 4920996 189736..189849 1 NC_009092.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 189849 rpmJ 4920996 rpmJ Shewanella loihica PV-4 50S ribosomal protein L36 YP_001092310.1 189736 D 323850 CDS YP_001092311.1 127511114 4921086 189967..190323 1 NC_009092.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 190323 rpsM 4921086 rpsM Shewanella loihica PV-4 30S ribosomal protein S13 YP_001092311.1 189967 D 323850 CDS YP_001092312.1 127511115 4921089 190341..190733 1 NC_009092.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 190733 4921089 Shew_0181 Shewanella loihica PV-4 30S ribosomal protein S11 YP_001092312.1 190341 D 323850 CDS YP_001092313.1 127511116 4921129 190770..191390 1 NC_009092.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 191390 rpsD 4921129 rpsD Shewanella loihica PV-4 30S ribosomal protein S4 YP_001092313.1 190770 D 323850 CDS YP_001092314.1 127511117 4921035 191415..192404 1 NC_009092.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 192404 4921035 Shew_0183 Shewanella loihica PV-4 DNA-directed RNA polymerase subunit alpha YP_001092314.1 191415 D 323850 CDS YP_001092315.1 127511118 4921036 192444..192836 1 NC_009092.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 192836 rplQ 4921036 rplQ Shewanella loihica PV-4 50S ribosomal protein L17 YP_001092315.1 192444 D 323850 CDS YP_001092316.1 127511119 4921322 complement(192893..193870) 1 NC_009092.1 KEGG: she:Shewmr4_0226 hypothetical protein; hypothetical protein 193870 4921322 Shew_0185 Shewanella loihica PV-4 hypothetical protein YP_001092316.1 192893 R 323850 CDS YP_001092317.1 127511120 4921309 complement(194005..194490) 1 NC_009092.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 194490 4921309 Shew_0186 Shewanella loihica PV-4 cytochrome c-type biogenesis protein CcmE YP_001092317.1 194005 R 323850 CDS YP_001092318.1 127511121 4921045 complement(194487..194687) 1 NC_009092.1 PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD; Heme exporter protein CcmD 194687 4921045 Shew_0187 Shewanella loihica PV-4 Heme exporter protein CcmD YP_001092318.1 194487 R 323850 CDS YP_001092319.1 127511122 4921839 complement(194687..195433) 1 NC_009092.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: sfr:Sfri_0177 heme exporter protein CcmC; heme exporter protein CcmC 195433 4921839 Shew_0188 Shewanella loihica PV-4 heme exporter protein CcmC YP_001092319.1 194687 R 323850 CDS YP_001092320.1 127511123 4922029 complement(195435..196121) 1 NC_009092.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 196121 4922029 Shew_0189 Shewanella loihica PV-4 heme exporter protein CcmB YP_001092320.1 195435 R 323850 CDS YP_001092321.1 127511124 4922121 complement(196133..196783) 1 NC_009092.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 196783 4922121 Shew_0190 Shewanella loihica PV-4 cytochrome c biogenesis protein CcmA YP_001092321.1 196133 R 323850 CDS YP_001092322.1 127511125 4922152 197116..197409 1 NC_009092.1 PFAM: cytochrome c, class I; KEGG: sfr:Sfri_0180 cytochrome c, class I; cytochrome c, class I 197409 4922152 Shew_0191 Shewanella loihica PV-4 cytochrome c, class I YP_001092322.1 197116 D 323850 CDS YP_001092323.1 127511126 4922153 complement(197601..198851) 1 NC_009092.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0228 TPR repeat-containing protein; hypothetical protein 198851 4922153 Shew_0192 Shewanella loihica PV-4 hypothetical protein YP_001092323.1 197601 R 323850 CDS YP_001092324.1 127511127 4922233 199263..201239 1 NC_009092.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 201239 4922233 Shew_0193 Shewanella loihica PV-4 cytochrome c-type biogenesis protein CcmF YP_001092324.1 199263 D 323850 CDS YP_001092325.1 127511128 4922351 201257..201814 1 NC_009092.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0230 periplasmic protein thiol--disulphide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 201814 4922351 Shew_0194 Shewanella loihica PV-4 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_001092325.1 201257 D 323850 CDS YP_001092326.1 127511129 4922428 201814..202293 1 NC_009092.1 PFAM: cytochrome C biogenesis protein; KEGG: shm:Shewmr7_0231 cytochrome c biogenesis protein; cytochrome C biogenesis protein 202293 4922428 Shew_0195 Shewanella loihica PV-4 cytochrome C biogenesis protein YP_001092326.1 201814 D 323850 CDS YP_001092327.1 127511130 4922518 202290..202877 1 NC_009092.1 PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0232 redoxin domain protein; redoxin domain-containing protein 202877 4922518 Shew_0196 Shewanella loihica PV-4 redoxin domain-containing protein YP_001092327.1 202290 D 323850 CDS YP_001092328.1 127511131 4923936 complement(208521..209021) 1 NC_009092.1 PFAM: protein of unknown function DUF796; KEGG: pae:PA0085 hypothetical protein; hypothetical protein 209021 4923936 Shew_0197 Shewanella loihica PV-4 hypothetical protein YP_001092328.1 208521 R 323850 CDS YP_001092329.1 127511132 4922604 209239..210513 1 NC_009092.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: shm:Shewmr7_0233 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 210513 4922604 Shew_0198 Shewanella loihica PV-4 competence/damage-inducible protein CinA YP_001092329.1 209239 D 323850 CDS YP_001092330.1 127511133 4922458 complement(210571..211110) 1 NC_009092.1 PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein; hypothetical protein 211110 4922458 Shew_0199 Shewanella loihica PV-4 hypothetical protein YP_001092330.1 210571 R 323850 CDS YP_001092331.1 127511134 4922459 complement(211110..213746) 1 NC_009092.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 213746 4922459 Shew_0200 Shewanella loihica PV-4 phosphoenolpyruvate carboxylase YP_001092331.1 211110 R 323850 CDS YP_001092332.1 127511135 4922891 complement(213864..215024) 1 NC_009092.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 215024 4922891 Shew_0201 Shewanella loihica PV-4 acetylornithine deacetylase YP_001092332.1 213864 R 323850 CDS YP_001092333.1 127511136 4922657 215298..216278 1 NC_009092.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 216278 argC 4922657 argC Shewanella loihica PV-4 N-acetyl-gamma-glutamyl-phosphate reductase YP_001092333.1 215298 D 323850 CDS YP_001092334.1 127511137 4922886 216307..217092 1 NC_009092.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 217092 4922886 Shew_0203 Shewanella loihica PV-4 acetylglutamate kinase YP_001092334.1 216307 D 323850 CDS YP_001092335.1 127511138 4923062 217135..218040 1 NC_009092.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 218040 4923062 Shew_0204 Shewanella loihica PV-4 ornithine carbamoyltransferase YP_001092335.1 217135 D 323850 CDS YP_001092336.1 127511139 4923212 218094..219317 1 NC_009092.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 219317 4923212 Shew_0205 Shewanella loihica PV-4 argininosuccinate synthase YP_001092336.1 218094 D 323850 CDS YP_001092337.1 127511140 4923374 219411..220772 1 NC_009092.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 220772 4923374 Shew_0206 Shewanella loihica PV-4 argininosuccinate lyase YP_001092337.1 219411 D 323850 CDS YP_001092338.1 127511141 4923420 complement(220944..223529) 1 NC_009092.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: sfr:Sfri_0369 penicillin-binding protein, 1A family protein; 1A family penicillin-binding protein 223529 4923420 Shew_0207 Shewanella loihica PV-4 1A family penicillin-binding protein YP_001092338.1 220944 R 323850 CDS YP_001092339.1 127511142 4923421 223714..224793 1 NC_009092.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 224793 4923421 Shew_0208 Shewanella loihica PV-4 type IV pilus assembly protein PilM YP_001092339.1 223714 D 323850 CDS YP_001092340.1 127511143 4923645 224781..225362 1 NC_009092.1 PFAM: Fimbrial assembly family protein; KEGG: shm:Shewmr7_0243 fimbrial assembly family protein; fimbrial assembly family protein 225362 4923645 Shew_0209 Shewanella loihica PV-4 fimbrial assembly family protein YP_001092340.1 224781 D 323850 CDS YP_001092341.1 127511144 4923537 225359..225982 1 NC_009092.1 PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO; pilus assembly protein, PilO 225982 4923537 Shew_0210 Shewanella loihica PV-4 pilus assembly protein, PilO YP_001092341.1 225359 D 323850 CDS YP_001092342.1 127511145 4923395 225979..226494 1 NC_009092.1 PFAM: Pilus assembly protein, PilQ; KEGG: shm:Shewmr7_0245 pilus assembly protein, PilQ; pilus assembly protein, PilQ 226494 4923395 Shew_0211 Shewanella loihica PV-4 pilus assembly protein, PilQ YP_001092342.1 225979 D 323850 CDS YP_001092343.1 127511146 4923582 226517..228568 1 NC_009092.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3699 type IV pilus secretin PilQ; type IV pilus secretin PilQ 228568 4923582 Shew_0212 Shewanella loihica PV-4 type IV pilus secretin PilQ YP_001092343.1 226517 D 323850 CDS YP_001092344.1 127511147 4923605 228784..229299 1 NC_009092.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 229299 aroK 4923605 aroK Shewanella loihica PV-4 shikimate kinase I YP_001092344.1 228784 D 323850 CDS YP_001092345.1 127511148 4923755 229315..230391 1 NC_009092.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 230391 aroB 4923755 aroB Shewanella loihica PV-4 3-dehydroquinate synthase YP_001092345.1 229315 D 323850 CDS YP_001092346.1 127511149 4923669 230408..231943 1 NC_009092.1 PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein 231943 4923669 Shew_0215 Shewanella loihica PV-4 sporulation domain-containing protein YP_001092346.1 230408 D 323850 CDS YP_001092347.1 127511150 4923670 231996..232835 1 NC_009092.1 KEGG: sdn:Sden_0264 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 232835 4923670 Shew_0216 Shewanella loihica PV-4 DNA adenine methylase YP_001092347.1 231996 D 323850 CDS YP_001092348.1 127511151 4923683 complement(232910..233083) 1 NC_009092.1 KEGG: sfr:Sfri_0379 hypothetical protein; hypothetical protein 233083 4923683 Shew_0217 Shewanella loihica PV-4 hypothetical protein YP_001092348.1 232910 R 323850 CDS YP_001092349.1 127511152 4923728 complement(233092..233436) 1 NC_009092.1 KEGG: shm:Shewmr7_0252 hypothetical protein; hypothetical protein 233436 4923728 Shew_0218 Shewanella loihica PV-4 hypothetical protein YP_001092349.1 233092 R 323850 CDS YP_001092350.1 127511153 4923751 233648..234322 1 NC_009092.1 PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 234322 4923751 Shew_0219 Shewanella loihica PV-4 ribulose-phosphate 3-epimerase YP_001092350.1 233648 D 323850 CDS YP_001092351.1 127511154 4923840 234325..235020 1 NC_009092.1 KEGG: son:SO0293 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 235020 4923840 Shew_0220 Shewanella loihica PV-4 phosphoglycolate phosphatase YP_001092351.1 234325 D 323850 CDS YP_001092352.1 127511155 4923845 235026..236024 1 NC_009092.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 236024 4923845 Shew_0221 Shewanella loihica PV-4 tryptophanyl-tRNA synthetase YP_001092352.1 235026 D 323850 CDS YP_001092353.1 127511156 4923879 complement(236089..236964) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; LysR family transcriptional regulator 236964 4923879 Shew_0222 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092353.1 236089 R 323850 CDS YP_001092354.1 127511157 4923901 237090..237959 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_3688 protein of unknown function DUF6, transmembrane; hypothetical protein 237959 4923901 Shew_0223 Shewanella loihica PV-4 hypothetical protein YP_001092354.1 237090 D 323850 CDS YP_001092355.1 127511158 4923902 complement(237981..238550) 1 NC_009092.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_0258 transport-associated; transport-associated 238550 4923902 Shew_0224 Shewanella loihica PV-4 transport-associated YP_001092355.1 237981 R 323850 CDS YP_001092356.1 127511159 4923913 complement(238547..239140) 1 NC_009092.1 TIGRFAM: phosphoheptose isomerase; KEGG: shm:Shewmr7_0259 phosphoheptose isomerase; phosphoheptose isomerase 239140 4923913 Shew_0225 Shewanella loihica PV-4 phosphoheptose isomerase YP_001092356.1 238547 R 323850 CDS YP_001092357.1 127511160 4923961 complement(239209..239553) 1 NC_009092.1 PFAM: protein of unknown function UPF0102; KEGG: she:Shewmr4_3685 protein of unknown function UPF0102; hypothetical protein 239553 4923961 Shew_0226 Shewanella loihica PV-4 hypothetical protein YP_001092357.1 239209 R 323850 CDS YP_001092358.1 127511161 4923967 complement(239550..241454) 1 NC_009092.1 PFAM: LppC family lipoprotein; KEGG: shm:Shewmr7_0261 LppC family lipoprotein; LppC family lipoprotein 241454 4923967 Shew_0227 Shewanella loihica PV-4 LppC family lipoprotein YP_001092358.1 239550 R 323850 CDS YP_001092359.1 127511162 4924073 241543..242385 1 NC_009092.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0262 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase 242385 4924073 Shew_0228 Shewanella loihica PV-4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001092359.1 241543 D 323850 CDS YP_001092360.1 127511163 4923937 complement(242897..243706) 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_06608 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; extracellular solute-binding protein 243706 4923937 Shew_0229 Shewanella loihica PV-4 extracellular solute-binding protein YP_001092360.1 242897 R 323850 CDS YP_001092361.1 127511164 4924112 complement(243776..245485) 1 NC_009092.1 KEGG: sfr:Sfri_0393 hypothetical protein; hypothetical protein 245485 4924112 Shew_0230 Shewanella loihica PV-4 hypothetical protein YP_001092361.1 243776 R 323850 CDS YP_001092362.1 127511165 4924223 complement(245669..246940) 1 NC_009092.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 246940 4924223 Shew_0231 Shewanella loihica PV-4 hypothetical protein YP_001092362.1 245669 R 323850 CDS YP_001092363.1 127511166 4924224 247133..247528 1 NC_009092.1 KEGG: shm:Shewmr7_0274 hypothetical protein; hypothetical protein 247528 4924224 Shew_0232 Shewanella loihica PV-4 hypothetical protein YP_001092363.1 247133 D 323850 CDS YP_001092364.1 127511167 4921085 247659..250001 1 NC_009092.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: she:Shewmr4_3670 radical SAM N-terminal domain protein; hypothetical protein 250001 4921085 Shew_0233 Shewanella loihica PV-4 hypothetical protein YP_001092364.1 247659 D 323850 CDS YP_001092365.1 127511168 4921356 250076..250435 1 NC_009092.1 PFAM: protein of unknown function DUF1232; KEGG: she:Shewmr4_3655 protein of unknown function DUF1232; hypothetical protein 250435 4921356 Shew_0234 Shewanella loihica PV-4 hypothetical protein YP_001092365.1 250076 D 323850 CDS YP_001092366.1 127511169 4921411 complement(250449..251399) 1 NC_009092.1 PFAM: isochorismatase hydrolase; KEGG: cps:CPS_0771 isochorismatase family protein; isochorismatase hydrolase 251399 4921411 Shew_0235 Shewanella loihica PV-4 isochorismatase hydrolase YP_001092366.1 250449 R 323850 CDS YP_001092367.1 127511170 4921803 251517..252434 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0770 transcriptional regulator, LysR family; LysR family transcriptional regulator 252434 4921803 Shew_0236 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092367.1 251517 D 323850 CDS YP_001092368.1 127511171 4921909 complement(252445..254343) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_3839 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 254343 4921909 Shew_0237 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001092368.1 252445 R 323850 CDS YP_001092369.1 127511172 4921908 complement(254419..255507) 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3663 porin, gram-negative type; porin 255507 4921908 Shew_0238 Shewanella loihica PV-4 porin YP_001092369.1 254419 R 323850 CDS YP_001092370.1 127511173 4921911 complement(255646..256626) 1 NC_009092.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_0283 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 256626 4921911 Shew_0239 Shewanella loihica PV-4 formate dehydrogenase subunit gamma YP_001092370.1 255646 R 323850 CDS YP_001092371.1 127511174 4921912 complement(256691..257305) 1 NC_009092.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_0284 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 257305 4921912 Shew_0240 Shewanella loihica PV-4 cytoplasmic chaperone TorD family protein YP_001092371.1 256691 R 323850 CDS YP_001092372.1 127511175 4922425 complement(257305..257850) 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0285 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 257850 4922425 Shew_0241 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092372.1 257305 R 323850 CDS YP_001092373.1 127511176 4922438 complement(257861..260074) 1 NC_009092.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: shm:Shewmr7_0286 twin-arginine translocation pathway signal; molydopterin dinucleotide-binding region 260074 4922438 Shew_0242 Shewanella loihica PV-4 molydopterin dinucleotide-binding region YP_001092373.1 257861 R 323850 CDS YP_001092374.1 127511177 4922439 complement(260264..261229) 1 NC_009092.1 PFAM: regulatory protein, LysR; KEGG: she:Shewmr4_3657 transcriptional regulator, LysR family; LysR family transcriptional regulator 261229 4922439 Shew_0243 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092374.1 260264 R 323850 CDS YP_001092375.1 127511178 4922528 261778..262473 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vvy:VV2222 tetrathionate reductase, subunit B; 4Fe-4S ferredoxin 262473 4922528 Shew_0244 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092375.1 261778 D 323850 CDS YP_001092376.1 127511179 4922896 262483..265521 1 NC_009092.1 PFAM: molydopterin dinucleotide-binding region; KEGG: ppr:PBPRB1372 hypothetical tetrathionate reductase; molydopterin dinucleotide-binding region 265521 4922896 Shew_0245 Shewanella loihica PV-4 molydopterin dinucleotide-binding region YP_001092376.1 262483 D 323850 CDS YP_001092377.1 127511180 4923007 265675..266292 1 NC_009092.1 KEGG: shm:Shewmr7_0292 hypothetical protein; hypothetical protein 266292 4923007 Shew_0246 Shewanella loihica PV-4 hypothetical protein YP_001092377.1 265675 D 323850 CDS YP_001092378.1 127511181 4923136 266599..266994 1 NC_009092.1 KEGG: pae:PA1038 hypothetical protein; hypothetical protein 266994 4923136 Shew_0247 Shewanella loihica PV-4 hypothetical protein YP_001092378.1 266599 D 323850 CDS YP_001092379.1 127511182 4923137 267039..267596 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psp:PSPPH_3302 ribosomal protein alanine acetyltransferase; N-acetyltransferase GCN5 267596 4923137 Shew_0248 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001092379.1 267039 D 323850 CDS YP_001092380.1 127511183 4923213 complement(268052..268594) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvy:VV0134 predicted acetyltransferase; N-acetyltransferase GCN5 268594 4923213 Shew_0249 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001092380.1 268052 R 323850 CDS YP_001092381.1 127511184 4923235 complement(268605..269783) 1 NC_009092.1 PFAM: regulatory protein, MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: vvy:VV0135 putative transcriptional regulator; MerR family transcriptional regulator 269783 4923235 Shew_0250 Shewanella loihica PV-4 MerR family transcriptional regulator YP_001092381.1 268605 R 323850 CDS YP_001092382.1 127511185 4923394 270161..270757 1 NC_009092.1 PFAM: phage integrase family protein; KEGG: vvu:VV20655 integrase; phage integrase family protein 270757 4923394 Shew_0251 Shewanella loihica PV-4 phage integrase family protein YP_001092382.1 270161 D 323850 CDS YP_001092383.1 127511186 4923533 complement(270902..271894) 1 NC_009092.1 KEGG: vvy:VV0136 hypothetical protein; hypothetical protein 271894 4923533 Shew_0252 Shewanella loihica PV-4 hypothetical protein YP_001092383.1 270902 R 323850 CDS YP_001092384.1 127511187 4923667 complement(271884..272990) 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: vvy:VV0137 multidrug resistance efflux pump; secretion protein HlyD family protein 272990 4923667 Shew_0253 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001092384.1 271884 R 323850 CDS YP_001092385.1 127511188 4923781 complement(273010..273519) 1 NC_009092.1 KEGG: vvy:VV0138 hypothetical protein; hypothetical protein 273519 4923781 Shew_0254 Shewanella loihica PV-4 hypothetical protein YP_001092385.1 273010 R 323850 CDS YP_001092386.1 127511189 4923827 273651..274331 1 NC_009092.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: vvy:VV0139 hypothetical protein; ion transport 2 domain-containing protein 274331 4923827 Shew_0255 Shewanella loihica PV-4 ion transport 2 domain-containing protein YP_001092386.1 273651 D 323850 CDS YP_001092387.1 127511190 4923828 complement(274860..275438) 1 NC_009092.1 KEGG: son:SO0322 hypothetical protein; hypothetical protein 275438 4923828 Shew_0256 Shewanella loihica PV-4 hypothetical protein YP_001092387.1 274860 R 323850 CDS YP_001092388.1 127511191 4923874 complement(275574..277652) 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sdn:Sden_0280 peptidase S9, prolyl oligopeptidase active site region; peptidase S9 prolyl oligopeptidase 277652 4923874 Shew_0257 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001092388.1 275574 R 323850 CDS YP_001092389.1 127511192 4923904 complement(277754..278701) 1 NC_009092.1 KEGG: shm:Shewmr7_0294 hypothetical protein; hypothetical protein 278701 4923904 Shew_0258 Shewanella loihica PV-4 hypothetical protein YP_001092389.1 277754 R 323850 CDS YP_001092390.1 127511193 4920838 complement(278814..279215) 1 NC_009092.1 KEGG: sfr:Sfri_0404 hypothetical protein; hypothetical protein 279215 4920838 Shew_0259 Shewanella loihica PV-4 hypothetical protein YP_001092390.1 278814 R 323850 CDS YP_001092391.1 127511194 4920866 279538..280386 1 NC_009092.1 KEGG: she:Shewmr4_3647 hypothetical protein; hypothetical protein 280386 4920866 Shew_0260 Shewanella loihica PV-4 hypothetical protein YP_001092391.1 279538 D 323850 CDS YP_001092392.1 127511195 4920861 280637..280948 1 NC_009092.1 KEGG: sfr:Sfri_0406 hypothetical protein; hypothetical protein 280948 4920861 Shew_0261 Shewanella loihica PV-4 hypothetical protein YP_001092392.1 280637 D 323850 CDS YP_001092393.1 127511196 4920854 280966..282420 1 NC_009092.1 PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein 282420 4920854 Shew_0262 Shewanella loihica PV-4 hypothetical protein YP_001092393.1 280966 D 323850 CDS YP_001092394.1 127511197 4920843 282491..282796 1 NC_009092.1 KEGG: son:SO0331 hypothetical protein; hypothetical protein 282796 4920843 Shew_0263 Shewanella loihica PV-4 hypothetical protein YP_001092394.1 282491 D 323850 CDS YP_001092395.1 127511198 4920844 282793..283794 1 NC_009092.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 283794 4920844 Shew_0264 Shewanella loihica PV-4 serine/threonine protein kinase YP_001092395.1 282793 D 323850 CDS YP_001092396.1 127511199 4920831 283924..284535 1 NC_009092.1 PFAM: DSBA oxidoreductase; KEGG: sdn:Sden_0285 DsbA oxidoreductase; DSBA oxidoreductase 284535 4920831 Shew_0265 Shewanella loihica PV-4 DSBA oxidoreductase YP_001092396.1 283924 D 323850 CDS YP_001092397.1 127511200 4920826 284873..285085 1 NC_009092.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein 285085 4920826 Shew_0266 Shewanella loihica PV-4 hypothetical protein YP_001092397.1 284873 D 323850 CDS YP_001092398.1 127511201 4920821 complement(285155..285361) 1 NC_009092.1 PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein; hypothetical protein 285361 4920821 Shew_0267 Shewanella loihica PV-4 hypothetical protein YP_001092398.1 285155 R 323850 CDS YP_001092399.1 127511202 4920818 complement(285548..285829) 1 NC_009092.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: shm:Shewmr7_0308 transcriptional antiterminator, Rof; transcriptional antiterminator Rof 285829 4920818 Shew_0268 Shewanella loihica PV-4 transcriptional antiterminator Rof YP_001092399.1 285548 R 323850 CDS YP_001092400.1 127511203 4920815 285926..286813 1 NC_009092.1 PFAM: protein of unknown function DUF1223; KEGG: shm:Shewmr7_0309 protein of unknown function DUF1223; hypothetical protein 286813 4920815 Shew_0269 Shewanella loihica PV-4 hypothetical protein YP_001092400.1 285926 D 323850 CDS YP_001092401.1 127511204 4920805 complement(286882..287517) 1 NC_009092.1 KEGG: ppr:PBPRB1460 hypothetical protein; hypothetical protein 287517 4920805 Shew_0270 Shewanella loihica PV-4 hypothetical protein YP_001092401.1 286882 R 323850 CDS YP_001092402.1 127511205 4920771 287658..289007 1 NC_009092.1 KEGG: lpp:lpp1568 phospholipase; phospholipase 289007 4920771 Shew_0271 Shewanella loihica PV-4 phospholipase YP_001092402.1 287658 D 323850 CDS YP_001092403.1 127511206 4920772 complement(289060..289803) 1 NC_009092.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: she:Shewmr4_0303 hypothetical protein; cupin 289803 4920772 Shew_0272 Shewanella loihica PV-4 cupin YP_001092403.1 289060 R 323850 CDS YP_001092404.1 127511207 4920768 complement(289975..291039) 1 NC_009092.1 KEGG: son:SO1411 hypothetical protein; hypothetical protein 291039 4920768 Shew_0273 Shewanella loihica PV-4 hypothetical protein YP_001092404.1 289975 R 323850 CDS YP_001092405.1 127511208 4920764 complement(291207..292340) 1 NC_009092.1 KEGG: she:Shewmr4_0301 hypothetical protein; hypothetical protein 292340 4920764 Shew_0274 Shewanella loihica PV-4 hypothetical protein YP_001092405.1 291207 R 323850 CDS YP_001092406.1 127511209 4920726 complement(292382..292750) 1 NC_009092.1 KEGG: son:SO1413 tetraheme cytochrome c, putative; tetraheme cytochrome c 292750 4920726 Shew_0275 Shewanella loihica PV-4 tetraheme cytochrome c YP_001092406.1 292382 R 323850 CDS YP_001092407.1 127511210 4920688 complement(292756..294273) 1 NC_009092.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0299 flavocytochrome c; flavocytochrome c 294273 4920688 Shew_0276 Shewanella loihica PV-4 flavocytochrome c YP_001092407.1 292756 R 323850 CDS YP_001092408.1 127511211 4920679 294605..295390 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: son:SO1415 transcriptional regulator, TetR family; TetR family transcriptional regulator 295390 4920679 Shew_0277 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001092408.1 294605 D 323850 CDS YP_001092409.1 127511212 4920675 295678..296769 1 NC_009092.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 296769 4920675 Shew_0278 Shewanella loihica PV-4 branched-chain amino acid aminotransferase YP_001092409.1 295678 D 323850 CDS YP_001092410.1 127511213 4920661 complement(296813..297241) 1 NC_009092.1 hypothetical protein 297241 4920661 Shew_0279 Shewanella loihica PV-4 hypothetical protein YP_001092410.1 296813 R 323850 CDS YP_001092411.1 127511214 4920662 complement(297449..298150) 1 NC_009092.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family; GntR family transcriptional regulator 298150 4920662 Shew_0280 Shewanella loihica PV-4 GntR family transcriptional regulator YP_001092411.1 297449 R 323850 CDS YP_001092412.1 127511215 4920658 complement(298344..299291) 1 NC_009092.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase 299291 4920658 Shew_0281 Shewanella loihica PV-4 putative acyltransferase YP_001092412.1 298344 R 323850 CDS YP_001092413.1 127511216 4920645 complement(299316..300200) 1 NC_009092.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_0319 phospholipid/glycerol acyltransferase; putative acyltransferase 300200 4920645 Shew_0282 Shewanella loihica PV-4 putative acyltransferase YP_001092413.1 299316 R 323850 CDS YP_001092414.1 127511217 4920642 complement(300316..301836) 1 NC_009092.1 KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 301836 4920642 Shew_0283 Shewanella loihica PV-4 Mg chelatase subunit ChlI YP_001092414.1 300316 R 323850 CDS YP_001092415.1 127511218 4920639 302166..303491 1 NC_009092.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein; hypothetical protein 303491 4920639 Shew_0284 Shewanella loihica PV-4 hypothetical protein YP_001092415.1 302166 D 323850 CDS YP_001092416.1 127511219 4920634 complement(303520..304401) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0972 GGDEF domain; diguanylate cyclase 304401 4920634 Shew_0285 Shewanella loihica PV-4 diguanylate cyclase YP_001092416.1 303520 R 323850 CDS YP_001092417.1 127511220 4920627 complement(304599..305408) 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: she:Shewmr4_0358 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein; extracellular solute-binding protein 305408 4920627 Shew_0286 Shewanella loihica PV-4 extracellular solute-binding protein YP_001092417.1 304599 R 323850 CDS YP_001092418.1 127511221 4920618 complement(305476..306360) 1 NC_009092.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 306360 4920618 Shew_0287 Shewanella loihica PV-4 DNA-binding transcriptional regulator IlvY YP_001092418.1 305476 R 323850 CDS YP_001092419.1 127511222 4920619 306553..308034 1 NC_009092.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 308034 4920619 Shew_0288 Shewanella loihica PV-4 ketol-acid reductoisomerase YP_001092419.1 306553 D 323850 CDS YP_001092420.1 127511223 4920601 308543..310216 1 NC_009092.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 310216 4920601 Shew_0289 Shewanella loihica PV-4 acetolactate synthase 2 catalytic subunit YP_001092420.1 308543 D 323850 CDS YP_001092421.1 127511224 4920590 310213..310482 1 NC_009092.1 KEGG: shm:Shewmr7_3663 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 310482 ilvM 4920590 ilvM Shewanella loihica PV-4 acetolactate synthase 2 regulatory subunit YP_001092421.1 310213 D 323850 CDS YP_001092422.1 127511225 4920579 310509..311432 1 NC_009092.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 311432 4920579 Shew_0291 Shewanella loihica PV-4 branched-chain amino acid aminotransferase YP_001092422.1 310509 D 323850 CDS YP_001092423.1 127511226 4920565 311545..313395 1 NC_009092.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 313395 4920565 Shew_0292 Shewanella loihica PV-4 dihydroxy-acid dehydratase YP_001092423.1 311545 D 323850 CDS YP_001092424.1 127511227 4920560 313397..314947 1 NC_009092.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 314947 4920560 Shew_0293 Shewanella loihica PV-4 threonine dehydratase YP_001092424.1 313397 D 323850 CDS YP_001092425.1 127511228 4924049 315341..316483 1 NC_009092.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine--glyoxylate transaminase 316483 4924049 Shew_0294 Shewanella loihica PV-4 alanine--glyoxylate transaminase YP_001092425.1 315341 D 323850 CDS YP_001092426.1 127511229 4922392 complement(316564..316989) 1 NC_009092.1 hypothetical protein 316989 4922392 Shew_0295 Shewanella loihica PV-4 hypothetical protein YP_001092426.1 316564 R 323850 CDS YP_001092427.1 127511230 4922393 317368..317838 1 NC_009092.1 PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 probable HspC2 heat shock protein; heat shock protein Hsp20 317838 4922393 Shew_0296 Shewanella loihica PV-4 heat shock protein Hsp20 YP_001092427.1 317368 D 323850 CDS YP_001092428.1 127511231 4920864 complement(317928..319835) 1 NC_009092.1 KEGG: she:Shewmr4_0503 hypothetical protein; hypothetical protein 319835 4920864 Shew_0297 Shewanella loihica PV-4 hypothetical protein YP_001092428.1 317928 R 323850 CDS YP_001092429.1 127511232 4920691 complement(319961..321049) 1 NC_009092.1 KEGG: pat:Patl_0737 Zn-dependent hydrolase of the beta-lactamase fold; beta-lactamase fold Zn-dependent hydrolase 321049 4920691 Shew_0298 Shewanella loihica PV-4 beta-lactamase fold Zn-dependent hydrolase YP_001092429.1 319961 R 323850 CDS YP_001092430.1 127511233 4920625 321214..321822 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator; TetR family transcriptional regulator 321822 4920625 Shew_0299 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001092430.1 321214 D 323850 CDS YP_001092431.1 127511234 4923910 complement(321953..323311) 1 NC_009092.1 PFAM: sodium:neurotransmitter symporter; KEGG: son:SO4339 sodium-dependent transporter, putative; sodium:neurotransmitter symporter 323311 4923910 Shew_0300 Shewanella loihica PV-4 sodium:neurotransmitter symporter YP_001092431.1 321953 R 323850 CDS YP_001092432.1 127511235 4923906 complement(323549..324049) 1 NC_009092.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4337 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 324049 4923906 Shew_0301 Shewanella loihica PV-4 AsnC family transcriptional regulator YP_001092432.1 323549 R 323850 CDS YP_001092433.1 127511236 4923909 complement(324124..324891) 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 324891 4923909 Shew_0302 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001092433.1 324124 R 323850 CDS YP_001092434.1 127511237 4924233 complement(324998..326350) 1 NC_009092.1 PFAM: Inner membrane CreD family protein; KEGG: shm:Shewmr7_3656 inner membrane CreD family protein; hypothetical protein 326350 4924233 Shew_0303 Shewanella loihica PV-4 hypothetical protein YP_001092434.1 324998 R 323850 CDS YP_001092435.1 127511238 4924234 complement(326573..326833) 1 NC_009092.1 PFAM: protein of unknown function DUF526; KEGG: shm:Shewmr7_3651 protein of unknown function DUF526; hypothetical protein 326833 4924234 Shew_0304 Shewanella loihica PV-4 hypothetical protein YP_001092435.1 326573 R 323850 CDS YP_001092436.1 127511239 4923831 327074..329086 1 NC_009092.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 329086 4923831 Shew_0305 Shewanella loihica PV-4 ATP-dependent DNA helicase Rep YP_001092436.1 327074 D 323850 CDS YP_001092437.1 127511240 4923833 complement(329116..331764) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_0377 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 331764 4923833 Shew_0306 Shewanella loihica PV-4 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001092437.1 329116 R 323850 CDS YP_001092438.1 127511241 4923941 complement(332601..334523) 1 NC_009092.1 PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 334523 4923941 Shew_0307 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001092438.1 332601 R 323850 CDS YP_001092439.1 127511242 4924252 complement(334532..335239) 1 NC_009092.1 KEGG: son:SO4322 hypothetical protein; hypothetical protein 335239 4924252 Shew_0308 Shewanella loihica PV-4 hypothetical protein YP_001092439.1 334532 R 323850 CDS YP_001092440.1 127511243 4924269 complement(335256..335861) 1 NC_009092.1 PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_0380 OmpA/MotB; OmpA/MotB domain-containing protein 335861 4924269 Shew_0309 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001092440.1 335256 R 323850 CDS YP_001092441.1 127511244 4924280 complement(335861..337273) 1 NC_009092.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sdn:Sden_0381 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 337273 4924280 Shew_0310 Shewanella loihica PV-4 TolC family type I secretion outer membrane protein YP_001092441.1 335861 R 323850 CDS YP_001092442.1 127511245 4924282 complement(337305..338687) 1 NC_009092.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3644 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 338687 4924282 Shew_0311 Shewanella loihica PV-4 HlyD family type I secretion membrane fusion protein YP_001092442.1 337305 R 323850 CDS YP_001092443.1 127511246 4924283 complement(338680..340860) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein; ABC transporter-like protein 340860 4924283 Shew_0312 Shewanella loihica PV-4 ABC transporter-like protein YP_001092443.1 338680 R 323850 CDS YP_001092444.1 127511247 4924153 complement(340995..355505) 1 NC_009092.1 TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein; outer membrane adhesin-like protein 355505 4924153 Shew_0313 Shewanella loihica PV-4 outer membrane adhesin-like protein YP_001092444.1 340995 R 323850 CDS YP_001092445.1 127511248 4923970 complement(355622..360283) 1 NC_009092.1 KEGG: sdn:Sden_0384 hypothetical protein; TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; SMART: Cadherin; outer membrane adhesin-like protein 360283 4923970 Shew_0314 Shewanella loihica PV-4 outer membrane adhesin-like protein YP_001092445.1 355622 R 323850 CDS YP_001092446.1 127511249 4924288 complement(360568..361734) 1 NC_009092.1 PFAM: HemY domain protein; KEGG: she:Shewmr4_0385 HemY domain protein; HemY domain-containing protein 361734 4924288 Shew_0315 Shewanella loihica PV-4 HemY domain-containing protein YP_001092446.1 360568 R 323850 CDS YP_001092447.1 127511250 4923984 complement(361731..362873) 1 NC_009092.1 PFAM: protein of unknown function DUF513, hemX; KEGG: she:Shewmr4_0386 protein of unknown function DUF513, HemX; hypothetical protein 362873 4923984 Shew_0316 Shewanella loihica PV-4 hypothetical protein YP_001092447.1 361731 R 323850 CDS YP_001092448.1 127511251 4924048 complement(362929..363660) 1 NC_009092.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 363660 4924048 Shew_0317 Shewanella loihica PV-4 uroporphyrinogen III synthase HEM4 YP_001092448.1 362929 R 323850 CDS YP_001092449.1 127511252 4923838 complement(363663..364616) 1 NC_009092.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 364616 hemC 4923838 hemC Shewanella loihica PV-4 porphobilinogen deaminase YP_001092449.1 363663 R 323850 CDS YP_001092450.1 127511253 4920868 364802..367222 1 NC_009092.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 367222 cyaA 4920868 cyaA Shewanella loihica PV-4 adenylate cyclase YP_001092450.1 364802 D 323850 CDS YP_001092451.1 127511254 4920869 complement(367230..367604) 1 NC_009092.1 PFAM: Frataxin family protein; KEGG: shm:Shewmr7_3636 frataxin family protein; frataxin family protein 367604 4920869 Shew_0320 Shewanella loihica PV-4 frataxin family protein YP_001092451.1 367230 R 323850 CDS YP_001092452.1 127511255 4924113 368094..368261 1 NC_009092.1 hypothetical protein 368261 4924113 Shew_0321 Shewanella loihica PV-4 hypothetical protein YP_001092452.1 368094 D 323850 CDS YP_001092453.1 127511256 4924067 368267..369511 1 NC_009092.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_3634 diaminopimelate decarboxylase; diaminopimelate decarboxylase 369511 4924067 Shew_0322 Shewanella loihica PV-4 diaminopimelate decarboxylase YP_001092453.1 368267 D 323850 CDS YP_001092454.1 127511257 4920558 369549..370388 1 NC_009092.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 370388 dapF 4920558 dapF Shewanella loihica PV-4 diaminopimelate epimerase YP_001092454.1 369549 D 323850 CDS YP_001092455.1 127511258 4921929 370397..371023 1 NC_009092.1 PFAM: protein of unknown function DUF484; KEGG: sfr:Sfri_0446 protein of unknown function DUF484; hypothetical protein 371023 4921929 Shew_0324 Shewanella loihica PV-4 hypothetical protein YP_001092455.1 370397 D 323850 CDS YP_001092456.1 127511259 4921970 371031..371924 1 NC_009092.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: shm:Shewmr7_3631 tyrosine recombinase XerC; tyrosine recombinase XerC 371924 4921970 Shew_0325 Shewanella loihica PV-4 tyrosine recombinase XerC YP_001092456.1 371031 D 323850 CDS YP_001092457.1 127511260 4922616 371917..372639 1 NC_009092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_3630 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 372639 4922616 Shew_0326 Shewanella loihica PV-4 HAD family hydrolase YP_001092457.1 371917 D 323850 CDS YP_001092458.1 127511261 4922679 372741..373316 1 NC_009092.1 PFAM: HupE/UreJ protein; KEGG: she:Shewmr4_0396 HupE/UreJ protein; HupE/UreJ protein 373316 4922679 Shew_0327 Shewanella loihica PV-4 HupE/UreJ protein YP_001092458.1 372741 D 323850 CDS YP_001092459.1 127511262 4922680 complement(373429..374145) 1 NC_009092.1 PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: she:Shewmr4_0398 hemerythrin HHE cation binding domain protein; hypothetical protein 374145 4922680 Shew_0328 Shewanella loihica PV-4 hypothetical protein YP_001092459.1 373429 R 323850 CDS YP_001092460.1 127511263 4922462 complement(374408..374713) 1 NC_009092.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 374713 fis 4922462 fis Shewanella loihica PV-4 DNA-binding protein Fis YP_001092460.1 374408 R 323850 CDS YP_001092461.1 127511264 4922938 complement(374731..375699) 1 NC_009092.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein 375699 4922938 Shew_0330 Shewanella loihica PV-4 nifR3 family TIM-barrel protein YP_001092461.1 374731 R 323850 CDS YP_001092462.1 127511265 4923907 complement(375851..376732) 1 NC_009092.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 376732 prmA 4923907 prmA Shewanella loihica PV-4 50S ribosomal protein L11 methyltransferase YP_001092462.1 375851 R 323850 CDS YP_001092463.1 127511266 4923855 377079..377801 1 NC_009092.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 377801 4923855 Shew_0332 Shewanella loihica PV-4 fumarate reductase cytochrome b-556 subunit YP_001092463.1 377079 D 323850 CDS YP_001092464.1 127511267 4923178 377946..378617 1 NC_009092.1 PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: she:Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex, transmembrane subunit 378617 4923178 Shew_0333 Shewanella loihica PV-4 fumarate reductase respiratory complex, transmembrane subunit YP_001092464.1 377946 D 323850 CDS YP_001092465.1 127511268 4923883 378664..380670 1 NC_009092.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 380670 4923883 Shew_0334 Shewanella loihica PV-4 fumarate reductase flavoprotein subunit YP_001092465.1 378664 D 323850 CDS YP_001092466.1 127511269 4920845 380667..381398 1 NC_009092.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 381398 frdB 4920845 frdB Shewanella loihica PV-4 fumarate reductase iron-sulfur subunit YP_001092466.1 380667 D 323850 CDS YP_001092467.1 127511270 4920846 381590..382513 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 382513 4920846 Shew_0336 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092467.1 381590 D 323850 CDS YP_001092468.1 127511271 4921931 complement(382589..383854) 1 NC_009092.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 383854 rho 4921931 rho Shewanella loihica PV-4 transcription termination factor Rho YP_001092468.1 382589 R 323850 CDS YP_001092469.1 127511272 4921538 complement(384085..384411) 1 NC_009092.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_3615 thioredoxin; thioredoxin 384411 4921538 Shew_0338 Shewanella loihica PV-4 thioredoxin YP_001092469.1 384085 R 323850 CDS YP_001092470.1 127511273 4922835 384583..385890 1 NC_009092.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 385890 4922835 Shew_0339 Shewanella loihica PV-4 ATP-dependent RNA helicase RhlB YP_001092470.1 384583 D 323850 CDS YP_001092471.1 127511274 4923758 385890..386822 1 NC_009092.1 PFAM: Ppx/GppA phosphatase; KEGG: shm:Shewmr7_3613 Ppx/GppA phosphatase; Ppx/GppA phosphatase 386822 4923758 Shew_0340 Shewanella loihica PV-4 Ppx/GppA phosphatase YP_001092471.1 385890 D 323850 CDS YP_001092472.1 127511275 4920671 387111..389840 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sdn:Sden_2404 TonB-dependent receptor; TonB-dependent receptor 389840 4920671 Shew_0341 Shewanella loihica PV-4 TonB-dependent receptor YP_001092472.1 387111 D 323850 CDS YP_001092473.1 127511276 4923544 complement(389891..390427) 1 NC_009092.1 KEGG: son:SO0409 hypothetical protein; hypothetical protein 390427 4923544 Shew_0342 Shewanella loihica PV-4 hypothetical protein YP_001092473.1 389891 R 323850 CDS YP_001092474.1 127511277 4923422 complement(390657..391235) 1 NC_009092.1 KEGG: son:SO0474 hypothetical protein; hypothetical protein 391235 4923422 Shew_0343 Shewanella loihica PV-4 hypothetical protein YP_001092474.1 390657 R 323850 CDS YP_001092475.1 127511278 4923423 391653..393173 1 NC_009092.1 PFAM: Na+/H+ antiporter NhaC; KEGG: sdn:Sden_3405 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 393173 4923423 Shew_0344 Shewanella loihica PV-4 Na+/H+ antiporter NhaC YP_001092475.1 391653 D 323850 CDS YP_001092476.1 127511279 4921425 complement(393299..393934) 1 NC_009092.1 PFAM: Redoxin domain protein; KEGG: son:SO0476 thioredoxin, putative; redoxin domain-containing protein 393934 4921425 Shew_0345 Shewanella loihica PV-4 redoxin domain-containing protein YP_001092476.1 393299 R 323850 CDS YP_001092477.1 127511280 4923807 complement(393931..394377) 1 NC_009092.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0477 cytochrome c-type biogenesis protein NrfF precursor; cytochrome C biogenesis protein 394377 4923807 Shew_0346 Shewanella loihica PV-4 cytochrome C biogenesis protein YP_001092477.1 393931 R 323850 CDS YP_001092478.1 127511281 4922599 complement(394380..396371) 1 NC_009092.1 PFAM: cytochrome c assembly protein; KEGG: she:Shewmr4_0487 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein 396371 4922599 Shew_0347 Shewanella loihica PV-4 cytochrome c assembly protein YP_001092478.1 394380 R 323850 CDS YP_001092479.1 127511282 4920993 396809..398848 1 NC_009092.1 KEGG: shm:Shewmr7_3542 cytochrome c, putative; cytochrome c 398848 4920993 Shew_0348 Shewanella loihica PV-4 cytochrome c YP_001092479.1 396809 D 323850 CDS YP_001092480.1 127511283 4922043 398930..399355 1 NC_009092.1 SMART: Rhodanese domain protein; KEGG: son:SO0480 hypothetical protein; rhodanese domain-containing protein 399355 4922043 Shew_0349 Shewanella loihica PV-4 rhodanese domain-containing protein YP_001092480.1 398930 D 323850 CDS YP_001092481.1 127511284 4923551 399422..400225 1 NC_009092.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0490 FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type 400225 4923551 Shew_0350 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001092481.1 399422 D 323850 CDS YP_001092482.1 127511285 4920782 400254..400946 1 NC_009092.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; hypothetical protein 400946 4920782 Shew_0351 Shewanella loihica PV-4 hypothetical protein YP_001092482.1 400254 D 323850 CDS YP_001092483.1 127511286 4920783 401064..401711 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 401711 4920783 Shew_0352 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092483.1 401064 D 323850 CDS YP_001092484.1 127511287 4923142 401714..402661 1 NC_009092.1 PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_0493 polysulphide reductase, NrfD; polysulfide reductase NrfD 402661 4923142 Shew_0353 Shewanella loihica PV-4 polysulfide reductase NrfD YP_001092484.1 401714 D 323850 CDS YP_001092485.1 127511288 4920974 402716..403204 1 NC_009092.1 PFAM: NosL family protein; KEGG: shm:Shewmr7_3536 NosL family protein; NosL family protein 403204 4920974 Shew_0354 Shewanella loihica PV-4 NosL family protein YP_001092485.1 402716 D 323850 CDS YP_001092486.1 127511289 4920906 403215..404573 1 NC_009092.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: shm:Shewmr7_3535 periplasmic copper-binding protein; periplasmic copper-binding protein 404573 4920906 Shew_0355 Shewanella loihica PV-4 periplasmic copper-binding protein YP_001092486.1 403215 D 323850 CDS YP_001092487.1 127511290 4921495 404570..405499 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_0496 ABC transporter-related protein; ABC transporter-like protein 405499 4921495 Shew_0356 Shewanella loihica PV-4 ABC transporter-like protein YP_001092487.1 404570 D 323850 CDS YP_001092488.1 127511291 4921713 405496..406347 1 NC_009092.1 KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease 406347 4921713 Shew_0357 Shewanella loihica PV-4 copper ABC transporter permease YP_001092488.1 405496 D 323850 CDS YP_001092489.1 127511292 4921737 406528..407808 1 NC_009092.1 PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC 407808 4921737 Shew_0358 Shewanella loihica PV-4 transcriptional regulator CadC YP_001092489.1 406528 D 323850 CDS YP_001092490.1 127511293 4922226 complement(407878..408576) 1 NC_009092.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 408576 fre 4922226 fre Shewanella loihica PV-4 FMN reductase YP_001092490.1 407878 R 323850 CDS YP_001092491.1 127511294 4922227 complement(408711..410192) 1 NC_009092.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: shm:Shewmr7_3525 UbiD family decarboxylases; UbiD family decarboxylase 410192 4922227 Shew_0360 Shewanella loihica PV-4 UbiD family decarboxylase YP_001092491.1 408711 R 323850 CDS YP_001092492.1 127511295 4922817 410360..410836 1 NC_009092.1 KEGG: sfr:Sfri_3388 hypothetical protein; hypothetical protein 410836 4922817 Shew_0361 Shewanella loihica PV-4 hypothetical protein YP_001092492.1 410360 D 323850 CDS YP_001092493.1 127511296 4923141 complement(410865..411581) 1 NC_009092.1 KEGG: she:Shewmr4_1481 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 411581 4923141 Shew_0362 Shewanella loihica PV-4 signal peptidase I YP_001092493.1 410865 R 323850 CDS YP_001092494.1 127511297 4921315 411699..412376 1 NC_009092.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 412376 4921315 Shew_0363 Shewanella loihica PV-4 nucleotidase YP_001092494.1 411699 D 323850 CDS YP_001092495.1 127511298 4922516 complement(412388..412879) 1 NC_009092.1 KEGG: vfi:VF0366 MshA, mannose-sensitive haemaglutinin; mannose-sensitive hemaglutinin MshA 412879 4922516 Shew_0364 Shewanella loihica PV-4 mannose-sensitive hemaglutinin MshA YP_001092495.1 412388 R 323850 CDS YP_001092496.1 127511299 4923255 413659..414147 1 NC_009092.1 KEGG: sfr:Sfri_0225 hypothetical protein; hypothetical protein 414147 4923255 Shew_0365 Shewanella loihica PV-4 hypothetical protein YP_001092496.1 413659 D 323850 CDS YP_001092497.1 127511300 4920674 414288..415238 1 NC_009092.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: she:Shewmr4_3823 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II 415238 4920674 Shew_0366 Shewanella loihica PV-4 ubiquinol oxidase subunit II YP_001092497.1 414288 D 323850 CDS YP_001092498.1 127511301 4924300 415238..417226 1 NC_009092.1 PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3915 cytochrome-c oxidase; cytochrome-c oxidase 417226 4924300 Shew_0367 Shewanella loihica PV-4 cytochrome-c oxidase YP_001092498.1 415238 D 323850 CDS YP_001092499.1 127511302 4924301 417223..417849 1 NC_009092.1 PFAM: cytochrome c oxidase, subunit III; KEGG: she:Shewmr4_3825 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 417849 4924301 Shew_0368 Shewanella loihica PV-4 cytochrome c oxidase subunit III YP_001092499.1 417223 D 323850 CDS YP_001092500.1 127511303 4924107 417846..418172 1 NC_009092.1 PFAM: cytochrome C oxidase subunit IV; KEGG: shm:Shewmr7_3917 cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV 418172 4924107 Shew_0369 Shewanella loihica PV-4 cytochrome C oxidase subunit IV YP_001092500.1 417846 D 323850 CDS YP_001092501.1 127511304 4923368 418183..419109 1 NC_009092.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 419109 4923368 Shew_0370 Shewanella loihica PV-4 protoheme IX farnesyltransferase YP_001092501.1 418183 D 323850 CDS YP_001092502.1 127511305 4923752 complement(419234..420100) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: stt:t3096 possible AraC-family transcriptional regulator; AraC family transcriptional regulator 420100 4923752 Shew_0371 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001092502.1 419234 R 323850 CDS YP_001092503.1 127511306 4923844 complement(420195..420629) 1 NC_009092.1 KEGG: sfr:Sfri_3594 hypothetical protein; hypothetical protein 420629 4923844 Shew_0372 Shewanella loihica PV-4 hypothetical protein YP_001092503.1 420195 R 323850 CDS YP_001092504.1 127511307 4920606 complement(420651..421046) 1 NC_009092.1 PFAM: protein of unknown function DUF971; KEGG: she:Shewmr4_3523 protein of unknown function DUF971; hypothetical protein 421046 4920606 Shew_0373 Shewanella loihica PV-4 hypothetical protein YP_001092504.1 420651 R 323850 CDS YP_001092505.1 127511308 4920943 complement(421123..422448) 1 NC_009092.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 422448 hslU 4920943 hslU Shewanella loihica PV-4 ATP-dependent protease ATP-binding subunit HslU YP_001092505.1 421123 R 323850 CDS YP_001092506.1 127511309 4924134 complement(422504..423028) 1 NC_009092.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 423028 4924134 Shew_0375 Shewanella loihica PV-4 ATP-dependent protease peptidase subunit YP_001092506.1 422504 R 323850 CDS YP_001092507.1 127511310 4924135 423623..425317 1 NC_009092.1 PFAM: Curlin associated repeat protein; KEGG: sfr:Sfri_1514 curlin associated repeat protein; curlin-associated protein 425317 4924135 Shew_0376 Shewanella loihica PV-4 curlin-associated protein YP_001092507.1 423623 D 323850 CDS YP_001092508.1 127511311 4921515 complement(425417..425995) 1 NC_009092.1 PFAM: Sporulation domain protein; KEGG: sfr:Sfri_3763 sporulation domain protein; sporulation domain-containing protein 425995 4921515 Shew_0377 Shewanella loihica PV-4 sporulation domain-containing protein YP_001092508.1 425417 R 323850 CDS YP_001092509.1 127511312 4921410 complement(426010..427755) 1 NC_009092.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 427755 argS 4921410 argS Shewanella loihica PV-4 arginyl-tRNA synthetase YP_001092509.1 426010 R 323850 CDS YP_001092510.1 127511313 4921042 complement(427878..430073) 1 NC_009092.1 KEGG: son:SO4122 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 430073 4921042 Shew_0379 Shewanella loihica PV-4 primosomal protein N' YP_001092510.1 427878 R 323850 CDS YP_001092511.1 127511314 4920603 430339..431115 1 NC_009092.1 KEGG: sdn:Sden_3355 hypothetical protein; hypothetical protein 431115 4920603 Shew_0380 Shewanella loihica PV-4 hypothetical protein YP_001092511.1 430339 D 323850 CDS YP_001092512.1 127511315 4923156 431296..431508 1 NC_009092.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 431508 rpmE 4923156 rpmE Shewanella loihica PV-4 50S ribosomal protein L31 YP_001092512.1 431296 D 323850 CDS YP_001092513.1 127511316 4924115 431735..432505 1 NC_009092.1 PFAM: nuclease (SNase domain protein); KEGG: noc:Noc_1218 micrococcal nuclease (SNase-like); nuclease 432505 4924115 Shew_0382 Shewanella loihica PV-4 nuclease YP_001092513.1 431735 D 323850 CDS YP_001092514.1 127511317 4924001 432685..433932 1 NC_009092.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: sfr:Sfri_3757 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase 433932 4924001 Shew_0383 Shewanella loihica PV-4 malate dehydrogenase YP_001092514.1 432685 D 323850 CDS YP_001092515.1 127511318 4924002 434107..436017 1 NC_009092.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 436017 4924002 Shew_0384 Shewanella loihica PV-4 regulatory protein CsrD YP_001092515.1 434107 D 323850 CDS YP_001092516.1 127511319 4923521 436254..437132 1 NC_009092.1 KEGG: sdn:Sden_3351 conserved hypothetical biogenesis protein MshI; biogenesis protein MshI 437132 4923521 Shew_0385 Shewanella loihica PV-4 biogenesis protein MshI YP_001092516.1 436254 D 323850 CDS YP_001092517.1 127511320 4923176 437133..437738 1 NC_009092.1 PFAM: Fimbrial assembly family protein; KEGG: she:Shewmr4_3489 hypothetical protein; fimbrial assembly family protein 437738 4923176 Shew_0386 Shewanella loihica PV-4 fimbrial assembly family protein YP_001092517.1 437133 D 323850 CDS YP_001092518.1 127511321 4923186 437735..438391 1 NC_009092.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 438391 4923186 Shew_0387 Shewanella loihica PV-4 MSHA biogenesis protein MshJ YP_001092518.1 437735 D 323850 CDS YP_001092519.1 127511322 4922149 438372..438698 1 NC_009092.1 KEGG: she:Shewmr4_3487 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 438698 4922149 Shew_0388 Shewanella loihica PV-4 MSHA biogenesis protein MshK YP_001092519.1 438372 D 323850 CDS YP_001092520.1 127511323 4923151 438699..440390 1 NC_009092.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3486 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 440390 4923151 Shew_0389 Shewanella loihica PV-4 pilus (MSHA type) biogenesis protein MshL YP_001092520.1 438699 D 323850 CDS YP_001092521.1 127511324 4922578 440395..441300 1 NC_009092.1 KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 441300 4922578 Shew_0390 Shewanella loihica PV-4 MSHA biogenesis protein MshM YP_001092521.1 440395 D 323850 CDS YP_001092522.1 127511325 4921799 441297..442457 1 NC_009092.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0468 tetratricopeptide TPR_2 repeat protein; hypothetical protein 442457 4921799 Shew_0391 Shewanella loihica PV-4 hypothetical protein YP_001092522.1 441297 D 323850 CDS YP_001092523.1 127511326 4921800 442454..444214 1 NC_009092.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_0469 type II secretion system protein E; type II secretion system protein E 444214 4921800 Shew_0392 Shewanella loihica PV-4 type II secretion system protein E YP_001092523.1 442454 D 323850 CDS YP_001092524.1 127511327 4921127 444217..445434 1 NC_009092.1 PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein 445434 4921127 Shew_0393 Shewanella loihica PV-4 type II secretion system protein YP_001092524.1 444217 D 323850 CDS YP_001092525.1 127511328 4922050 445467..445958 1 NC_009092.1 KEGG: shm:Shewmr7_0471 hypothetical protein; hypothetical protein 445958 4922050 Shew_0394 Shewanella loihica PV-4 hypothetical protein YP_001092525.1 445467 D 323850 CDS YP_001092526.1 127511329 4921269 446032..446667 1 NC_009092.1 KEGG: shm:Shewmr7_0472 methylation site containing protein; methylation site containing protein 446667 4921269 Shew_0395 Shewanella loihica PV-4 methylation site containing protein YP_001092526.1 446032 D 323850 CDS YP_001092527.1 127511330 4921202 446757..447266 1 NC_009092.1 KEGG: she:Shewmr4_3296 methylation site containing protein; methylation site containing protein 447266 4921202 Shew_0396 Shewanella loihica PV-4 methylation site containing protein YP_001092527.1 446757 D 323850 CDS YP_001092528.1 127511331 4920975 447281..447772 1 NC_009092.1 KEGG: she:Shewmr4_3479 methylation site containing protein; methylation site containing protein 447772 4920975 Shew_0397 Shewanella loihica PV-4 methylation site containing protein YP_001092528.1 447281 D 323850 CDS YP_001092529.1 127511332 4923239 447919..448368 1 NC_009092.1 KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC 448368 4923239 Shew_0398 Shewanella loihica PV-4 MSHA pilin protein MshC YP_001092529.1 447919 D 323850 CDS YP_001092530.1 127511333 4920883 448358..448909 1 NC_009092.1 KEGG: she:Shewmr4_3476 methylation site containing protein; methylation site containing protein 448909 4920883 Shew_0399 Shewanella loihica PV-4 methylation site containing protein YP_001092530.1 448358 D 323850 CDS YP_001092531.1 127511334 4920884 448909..449706 1 NC_009092.1 KEGG: sfr:Sfri_3741 methylation site containing protein; methylation site containing protein 449706 4920884 Shew_0400 Shewanella loihica PV-4 methylation site containing protein YP_001092531.1 448909 D 323850 CDS YP_001092532.1 127511335 4922148 449696..450133 1 NC_009092.1 KEGG: sfr:Sfri_3740 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 450133 4922148 Shew_0401 Shewanella loihica PV-4 MSHA biogenesis protein MshP YP_001092532.1 449696 D 323850 CDS YP_001092533.1 127511336 4923579 450126..452828 1 NC_009092.1 KEGG: she:Shewmr4_3473 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 452828 4923579 Shew_0402 Shewanella loihica PV-4 MSHA biogenesis protein MshQ YP_001092533.1 450126 D 323850 CDS YP_001092534.1 127511337 4922767 452994..454043 1 NC_009092.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 454043 4922767 Shew_0403 Shewanella loihica PV-4 rod shape-determining protein MreB YP_001092534.1 452994 D 323850 CDS YP_001092535.1 127511338 4921963 454178..455059 1 NC_009092.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 455059 4921963 Shew_0404 Shewanella loihica PV-4 rod shape-determining protein MreC YP_001092535.1 454178 D 323850 CDS YP_001092536.1 127511339 4922188 455056..455544 1 NC_009092.1 PFAM: Rod shape-determining protein MreD; KEGG: sfr:Sfri_3736 rod shape-determining protein MreD; rod shape-determining protein MreD 455544 4922188 Shew_0405 Shewanella loihica PV-4 rod shape-determining protein MreD YP_001092536.1 455056 D 323850 CDS YP_001092537.1 127511340 4922229 455544..456134 1 NC_009092.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sdn:Sden_3331 maf protein; maf protein 456134 4922229 Shew_0406 Shewanella loihica PV-4 maf protein YP_001092537.1 455544 D 323850 CDS YP_001092538.1 127511341 4922996 456232..457734 1 NC_009092.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 457734 4922996 Shew_0407 Shewanella loihica PV-4 ribonuclease G YP_001092538.1 456232 D 323850 CDS YP_001092539.1 127511342 4922997 457734..462044 1 NC_009092.1 KEGG: she:Shewmr4_3467 hypothetical protein; hypothetical protein 462044 4922997 Shew_0408 Shewanella loihica PV-4 hypothetical protein YP_001092539.1 457734 D 323850 CDS YP_001092540.1 127511343 4923206 461968..462798 1 NC_009092.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 462798 4923206 Shew_0409 Shewanella loihica PV-4 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001092540.1 461968 D 323850 CDS YP_001092541.1 127511344 4921934 462840..464288 1 NC_009092.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: shm:Shewmr7_0486 peptidase U62, modulator of DNA gyrase; C69 family peptidase 464288 4921934 Shew_0410 Shewanella loihica PV-4 C69 family peptidase YP_001092541.1 462840 D 323850 CDS YP_001092542.1 127511345 4921659 464481..465884 1 NC_009092.1 PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_0487 outer membrane efflux protein; outer membrane efflux protein 465884 4921659 Shew_0411 Shewanella loihica PV-4 outer membrane efflux protein YP_001092542.1 464481 D 323850 CDS YP_001092543.1 127511346 4922231 465874..466845 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein 466845 4922231 Shew_0412 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001092543.1 465874 D 323850 CDS YP_001092544.1 127511347 4922608 466858..468030 1 NC_009092.1 PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3462 ABC-2 type transporter; ABC transporter 468030 4922608 Shew_0413 Shewanella loihica PV-4 ABC transporter YP_001092544.1 466858 D 323850 CDS YP_001092545.1 127511348 4922704 468027..469172 1 NC_009092.1 PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3461 ABC-2 type transporter; ABC transporter 469172 4922704 Shew_0414 Shewanella loihica PV-4 ABC transporter YP_001092545.1 468027 D 323850 CDS YP_001092546.1 127511349 4920994 complement(469209..469751) 1 NC_009092.1 PFAM: protein of unknown function DUF615; KEGG: sdn:Sden_3068 protein of unknown function DUF615; hypothetical protein 469751 4920994 Shew_0415 Shewanella loihica PV-4 hypothetical protein YP_001092546.1 469209 R 323850 CDS YP_001092547.1 127511350 4920995 469898..471238 1 NC_009092.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: sfr:Sfri_3721 peptidase U62, modulator of DNA gyrase; C69 family peptidase 471238 4920995 Shew_0416 Shewanella loihica PV-4 C69 family peptidase YP_001092547.1 469898 D 323850 CDS YP_001092548.1 127511351 4921978 471407..471754 1 NC_009092.1 PFAM: regulatory protein, ArsR; KEGG: she:Shewmr4_0532 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 471754 4921978 Shew_0417 Shewanella loihica PV-4 ArsR family transcriptional regulator YP_001092548.1 471407 D 323850 CDS YP_001092549.1 127511352 4924340 471758..472792 1 NC_009092.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sde:Sde_3779 arsenical pump membrane protein, putative; arsenical-resistance protein 472792 4924340 Shew_0418 Shewanella loihica PV-4 arsenical-resistance protein YP_001092549.1 471758 D 323850 CDS YP_001092550.1 127511353 4924341 472828..473838 1 NC_009092.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 473838 4924341 Shew_0419 Shewanella loihica PV-4 glyceraldehyde-3-phosphate dehydrogenase YP_001092550.1 472828 D 323850 CDS YP_001092551.1 127511354 4924357 473839..475071 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0539 transporter, putative; major facilitator superfamily transporter 475071 4924357 Shew_0420 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001092551.1 473839 D 323850 CDS YP_001092552.1 127511355 4922430 475257..475505 1 NC_009092.1 PFAM: PspC domain protein; KEGG: nfa:nfa8710 hypothetical protein; phage shock protein C, PspC 475505 4922430 Shew_0421 Shewanella loihica PV-4 phage shock protein C, PspC YP_001092552.1 475257 D 323850 CDS YP_001092553.1 127511356 4922978 complement(475572..476057) 1 NC_009092.1 KEGG: ilo:IL0802 hypothetical protein; hypothetical protein 476057 4922978 Shew_0422 Shewanella loihica PV-4 hypothetical protein YP_001092553.1 475572 R 323850 CDS YP_001092554.1 127511357 4924392 476135..476557 1 NC_009092.1 PFAM: regulatory protein, MerR; KEGG: ilo:IL0801 transcriptional regulator, MerR family; MerR family transcriptional regulator 476557 4924392 Shew_0423 Shewanella loihica PV-4 MerR family transcriptional regulator YP_001092554.1 476135 D 323850 CDS YP_001092555.1 127511358 4924393 476762..478135 1 NC_009092.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein 478135 4924393 Shew_0424 Shewanella loihica PV-4 amino acid carrier protein YP_001092555.1 476762 D 323850 CDS YP_001092556.1 127511359 4924394 complement(478213..479313) 1 NC_009092.1 PFAM: ABC-2 type transporter; KEGG: sfr:Sfri_3539 ABC-2 type transporter; ABC transporter 479313 4924394 Shew_0425 Shewanella loihica PV-4 ABC transporter YP_001092556.1 478213 R 323850 CDS YP_001092557.1 127511360 4924072 complement(479300..480322) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sfr:Sfri_3538 ABC transporter-related protein; ABC transporter-like protein 480322 4924072 Shew_0426 Shewanella loihica PV-4 ABC transporter-like protein YP_001092557.1 479300 R 323850 CDS YP_001092558.1 127511361 4924114 complement(480322..481275) 1 NC_009092.1 KEGG: sfr:Sfri_3537 hypothetical protein; hypothetical protein 481275 4924114 Shew_0427 Shewanella loihica PV-4 hypothetical protein YP_001092558.1 480322 R 323850 CDS YP_001092559.1 127511362 4924133 complement(481506..481679) 1 NC_009092.1 KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein 481679 4924133 Shew_0428 Shewanella loihica PV-4 hypothetical protein YP_001092559.1 481506 R 323850 CDS YP_001092560.1 127511363 4924226 complement(482008..482700) 1 NC_009092.1 KEGG: she:Shewmr4_0547 hypothetical protein; hypothetical protein 482700 4924226 Shew_0429 Shewanella loihica PV-4 hypothetical protein YP_001092560.1 482008 R 323850 CDS YP_001092561.1 127511364 4921225 complement(482940..483212) 1 NC_009092.1 PFAM: histone family protein DNA-binding protein; KEGG: sfr:Sfri_3532 histone family protein DNA-binding protein; histone family protein DNA-binding protein 483212 4921225 Shew_0430 Shewanella loihica PV-4 histone family protein DNA-binding protein YP_001092561.1 482940 R 323850 CDS YP_001092562.1 127511365 4921556 complement(483467..483877) 1 NC_009092.1 KEGG: son:SO0550 hypothetical protein; hypothetical protein 483877 4921556 Shew_0431 Shewanella loihica PV-4 hypothetical protein YP_001092562.1 483467 R 323850 CDS YP_001092563.1 127511366 4921557 484163..484672 1 NC_009092.1 KEGG: shm:Shewmr7_3479 hypothetical protein; hypothetical protein 484672 4921557 Shew_0432 Shewanella loihica PV-4 hypothetical protein YP_001092563.1 484163 D 323850 CDS YP_001092564.1 127511367 4922060 complement(484694..485083) 1 NC_009092.1 hypothetical protein 485083 4922060 Shew_0433 Shewanella loihica PV-4 hypothetical protein YP_001092564.1 484694 R 323850 CDS YP_001092565.1 127511368 4922576 complement(485176..485487) 1 NC_009092.1 KEGG: shm:Shewmr7_3477 hypothetical protein; hypothetical protein 485487 4922576 Shew_0434 Shewanella loihica PV-4 hypothetical protein YP_001092565.1 485176 R 323850 CDS YP_001092566.1 127511369 4923081 485735..486256 1 NC_009092.1 KEGG: son:SO0554 hypothetical protein; hypothetical protein 486256 4923081 Shew_0435 Shewanella loihica PV-4 hypothetical protein YP_001092566.1 485735 D 323850 CDS YP_001092567.1 127511370 4923292 complement(486271..488043) 1 NC_009092.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3475 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 488043 4923292 Shew_0436 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001092567.1 486271 R 323850 CDS YP_001092568.1 127511371 4922764 complement(488177..488488) 1 NC_009092.1 KEGG: shm:Shewmr7_3474 hypothetical protein; hypothetical protein 488488 4922764 Shew_0437 Shewanella loihica PV-4 hypothetical protein YP_001092568.1 488177 R 323850 CDS YP_001092569.1 127511372 4924205 488537..489421 1 NC_009092.1 PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein 489421 4924205 Shew_0438 Shewanella loihica PV-4 GumN family protein YP_001092569.1 488537 D 323850 CDS YP_001092570.1 127511373 4920556 489529..490161 1 NC_009092.1 PFAM: CheD family protein; KEGG: sde:Sde_3103 CheD, stimulates methylation of MCP proteins; MCP proteins methylation stimulator CheD 490161 4920556 Shew_0439 Shewanella loihica PV-4 MCP proteins methylation stimulator CheD YP_001092570.1 489529 D 323850 CDS YP_001092571.1 127511374 4920557 complement(490170..491024) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3472 methyltransferase type 11; type 12 methyltransferase 491024 4920557 Shew_0440 Shewanella loihica PV-4 type 12 methyltransferase YP_001092571.1 490170 R 323850 CDS YP_001092572.1 127511375 4920554 491155..491994 1 NC_009092.1 PFAM: MaoC domain protein dehydratase; KEGG: shm:Shewmr7_3471 MaoC domain protein dehydratase; dehydratase 491994 4920554 Shew_0441 Shewanella loihica PV-4 dehydratase YP_001092572.1 491155 D 323850 CDS YP_001092573.1 127511376 4920651 complement(492128..493018) 1 NC_009092.1 PFAM: aldo/keto reductase; KEGG: she:Shewmr4_0560 aldo/keto reductase; aldo/keto reductase 493018 4920651 Shew_0442 Shewanella loihica PV-4 aldo/keto reductase YP_001092573.1 492128 R 323850 CDS YP_001092574.1 127511377 4920697 493192..494886 1 NC_009092.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 494886 4920697 Shew_0443 Shewanella loihica PV-4 formate--tetrahydrofolate ligase YP_001092574.1 493192 D 323850 CDS YP_001092575.1 127511378 4920769 complement(495031..496653) 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_3468 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 496653 4920769 Shew_0444 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001092575.1 495031 R 323850 CDS YP_001092576.1 127511379 4920848 496778..497113 1 NC_009092.1 KEGG: she:Shewmr4_0563 hypothetical protein; hypothetical protein 497113 4920848 Shew_0445 Shewanella loihica PV-4 hypothetical protein YP_001092576.1 496778 D 323850 CDS YP_001092577.1 127511380 4920931 497660..497920 1 NC_009092.1 KEGG: sfr:Sfri_3518 hypothetical protein; hypothetical protein 497920 4920931 Shew_0446 Shewanella loihica PV-4 hypothetical protein YP_001092577.1 497660 D 323850 CDS YP_001092578.1 127511381 4921049 497998..499203 1 NC_009092.1 KEGG: shm:Shewmr7_3464 hypothetical protein; hypothetical protein 499203 4921049 Shew_0447 Shewanella loihica PV-4 hypothetical protein YP_001092578.1 497998 D 323850 CDS YP_001092579.1 127511382 4921050 499187..500098 1 NC_009092.1 PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute binding protein 500098 4921050 Shew_0448 Shewanella loihica PV-4 periplasmic solute binding protein YP_001092579.1 499187 D 323850 CDS YP_001092580.1 127511383 4921418 500159..500950 1 NC_009092.1 PFAM: ABC-3 protein; KEGG: shm:Shewmr7_3462 ABC-3 protein; ABC-3 protein 500950 4921418 Shew_0449 Shewanella loihica PV-4 ABC-3 protein YP_001092580.1 500159 D 323850 CDS YP_001092581.1 127511384 4921434 501186..501920 1 NC_009092.1 KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 501920 4921434 Shew_0450 Shewanella loihica PV-4 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001092581.1 501186 D 323850 CDS YP_001092582.1 127511385 4921641 501945..502352 1 NC_009092.1 PFAM: protein of unknown function DUF1260; KEGG: sfr:Sfri_3513 protein of unknown function DUF1260; hypothetical protein 502352 4921641 Shew_0451 Shewanella loihica PV-4 hypothetical protein YP_001092582.1 501945 D 323850 CDS YP_001092583.1 127511386 4921661 complement(502430..503401) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_3512 diguanylate cyclase; diguanylate cyclase 503401 4921661 Shew_0452 Shewanella loihica PV-4 diguanylate cyclase YP_001092583.1 502430 R 323850 CDS YP_001092584.1 127511387 4921663 complement(503415..504410) 1 NC_009092.1 PFAM: response regulator receiver; KEGG: shm:Shewmr7_3458 response regulator receiver protein; response regulator receiver protein 504410 4921663 Shew_0453 Shewanella loihica PV-4 response regulator receiver protein YP_001092584.1 503415 R 323850 CDS YP_001092585.1 127511388 4921311 504816..505625 1 NC_009092.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 505625 4921311 Shew_0454 Shewanella loihica PV-4 enoyl-CoA hydratase YP_001092585.1 504816 D 323850 CDS YP_001092586.1 127511389 4921695 505791..506294 1 NC_009092.1 PFAM: uncharacterized protein UPF0114; KEGG: cps:CPS_1797 hypothetical protein; hypothetical protein 506294 4921695 Shew_0455 Shewanella loihica PV-4 hypothetical protein YP_001092586.1 505791 D 323850 CDS YP_001092587.1 127511390 4921696 complement(506342..507226) 1 NC_009092.1 KEGG: she:Shewmr4_0574 hypothetical protein; hypothetical protein 507226 4921696 Shew_0456 Shewanella loihica PV-4 hypothetical protein YP_001092587.1 506342 R 323850 CDS YP_001092588.1 127511391 4921736 complement(507362..510268) 1 NC_009092.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 510268 4921736 Shew_0457 Shewanella loihica PV-4 ATP-dependent helicase HepA YP_001092588.1 507362 R 323850 CDS YP_001092589.1 127511392 4921798 510634..512028 1 NC_009092.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein; PhoH family protein 512028 4921798 Shew_0458 Shewanella loihica PV-4 PhoH family protein YP_001092589.1 510634 D 323850 CDS YP_001092590.1 127511393 4921829 512269..515961 1 NC_009092.1 KEGG: she:Shewmr4_0577 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 515961 4921829 Shew_0459 Shewanella loihica PV-4 PAS/PAC sensor hybrid histidine kinase YP_001092590.1 512269 D 323850 CDS YP_001092591.1 127511394 4921856 516184..518583 1 NC_009092.1 KEGG: sfr:Sfri_3501 hypothetical protein; hypothetical protein 518583 4921856 Shew_0460 Shewanella loihica PV-4 hypothetical protein YP_001092591.1 516184 D 323850 CDS YP_001092592.1 127511395 4921694 complement(518656..519195) 1 NC_009092.1 hypothetical protein 519195 4921694 Shew_0461 Shewanella loihica PV-4 hypothetical protein YP_001092592.1 518656 R 323850 CDS YP_001092593.1 127511396 4921960 519508..519813 1 NC_009092.1 hypothetical protein 519813 4921960 Shew_0462 Shewanella loihica PV-4 hypothetical protein YP_001092593.1 519508 D 323850 CDS YP_001092594.1 127511397 4922015 complement(519932..520315) 1 NC_009092.1 KEGG: she:Shewmr4_3425 hypothetical protein; hypothetical protein 520315 4922015 Shew_0463 Shewanella loihica PV-4 hypothetical protein YP_001092594.1 519932 R 323850 CDS YP_001092595.1 127511398 4922016 complement(520368..520751) 1 NC_009092.1 hypothetical protein 520751 4922016 Shew_0464 Shewanella loihica PV-4 hypothetical protein YP_001092595.1 520368 R 323850 CDS YP_001092596.1 127511399 4922041 complement(520912..521322) 1 NC_009092.1 KEGG: rba:RB544 hypothetical protein; hypothetical protein 521322 4922041 Shew_0465 Shewanella loihica PV-4 hypothetical protein YP_001092596.1 520912 R 323850 CDS YP_001092597.1 127511400 4922125 complement(521519..524593) 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_0550 acriflavin resistance protein; acriflavin resistance protein 524593 4922125 Shew_0466 Shewanella loihica PV-4 acriflavin resistance protein YP_001092597.1 521519 R 323850 CDS YP_001092598.1 127511401 4922146 complement(524597..525679) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3401 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 525679 4922146 Shew_0467 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001092598.1 524597 R 323850 CDS YP_001092599.1 127511402 4922269 525876..526820 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_1434 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 526820 4922269 Shew_0468 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092599.1 525876 D 323850 CDS YP_001092600.1 127511403 4921964 complement(526823..527494) 1 NC_009092.1 PFAM: pentapeptide repeat protein; KEGG: ppr:PBPRB0125 hypothetical protein; pentapeptide repeat-containing protein 527494 4921964 Shew_0469 Shewanella loihica PV-4 pentapeptide repeat-containing protein YP_001092600.1 526823 R 323850 CDS YP_001092601.1 127511404 4922358 complement(527511..528878) 1 NC_009092.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: she:Shewmr4_3399 MATE efflux family protein; MATE efflux family protein 528878 4922358 Shew_0470 Shewanella loihica PV-4 MATE efflux family protein YP_001092601.1 527511 R 323850 CDS YP_001092602.1 127511405 4922411 529106..529396 1 NC_009092.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 529396 groES 4922411 groES Shewanella loihica PV-4 co-chaperonin GroES YP_001092602.1 529106 D 323850 CDS YP_001092603.1 127511406 4922412 529453..531102 1 NC_009092.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 531102 groEL 4922412 groEL Shewanella loihica PV-4 chaperonin GroEL YP_001092603.1 529453 D 323850 CDS YP_001092604.1 127511407 4921906 complement(531629..532156) 1 NC_009092.1 hypothetical protein 532156 4921906 Shew_0473 Shewanella loihica PV-4 hypothetical protein YP_001092604.1 531629 R 323850 CDS YP_001092605.1 127511408 4922451 complement(532153..532500) 1 NC_009092.1 KEGG: vfi:VF2040 hypothetical protein; hypothetical protein 532500 4922451 Shew_0474 Shewanella loihica PV-4 hypothetical protein YP_001092605.1 532153 R 323850 CDS YP_001092606.1 127511409 4922498 complement(532487..533653) 1 NC_009092.1 KEGG: vfi:VF2039 hypothetical protein; hypothetical protein 533653 4922498 Shew_0475 Shewanella loihica PV-4 hypothetical protein YP_001092606.1 532487 R 323850 CDS YP_001092607.1 127511410 4921683 complement(533870..534667) 1 NC_009092.1 PFAM: protein of unknown function DUF88; KEGG: sfr:Sfri_3658 protein of unknown function DUF88; hypothetical protein 534667 4921683 Shew_0476 Shewanella loihica PV-4 hypothetical protein YP_001092607.1 533870 R 323850 CDS YP_001092608.1 127511411 4922571 complement(534699..535280) 1 NC_009092.1 hypothetical protein 535280 4922571 Shew_0477 Shewanella loihica PV-4 hypothetical protein YP_001092608.1 534699 R 323850 CDS YP_001092609.1 127511412 4922589 535900..536136 1 NC_009092.1 PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0557 transcriptional regulator, XRE family; XRE family transcriptional regulator 536136 4922589 Shew_0478 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001092609.1 535900 D 323850 CDS YP_001092610.1 127511413 4922371 536139..537440 1 NC_009092.1 PFAM: HipA domain protein; KEGG: she:Shewmr4_3395 HipA domain protein; HipA domain-containing protein 537440 4922371 Shew_0479 Shewanella loihica PV-4 HipA domain-containing protein YP_001092610.1 536139 D 323850 CDS YP_001092611.1 127511414 4922372 537510..538568 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpp:lpp1174 hypothetical protein; Sel1 domain-containing protein 538568 4922372 Shew_0480 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001092611.1 537510 D 323850 CDS YP_001092612.1 127511415 4922771 538703..539107 1 NC_009092.1 KEGG: sfr:Sfri_3654 hypothetical protein; hypothetical protein 539107 4922771 Shew_0481 Shewanella loihica PV-4 hypothetical protein YP_001092612.1 538703 D 323850 CDS YP_001092613.1 127511416 4922959 539397..540563 1 NC_009092.1 KEGG: sfr:Sfri_2138 hypothetical protein; hypothetical protein 540563 4922959 Shew_0482 Shewanella loihica PV-4 hypothetical protein YP_001092613.1 539397 D 323850 CDS YP_001092614.1 127511417 4922714 540566..541378 1 NC_009092.1 KEGG: sfr:Sfri_2137 hypothetical protein; hypothetical protein 541378 4922714 Shew_0483 Shewanella loihica PV-4 hypothetical protein YP_001092614.1 540566 D 323850 CDS YP_001092615.1 127511418 4922575 complement(541500..542771) 1 NC_009092.1 hypothetical protein 542771 4922575 Shew_0484 Shewanella loihica PV-4 hypothetical protein YP_001092615.1 541500 R 323850 CDS YP_001092616.1 127511419 4922570 complement(542808..543425) 1 NC_009092.1 PFAM: Cold-shock protein, DNA-binding; Excalibur domain protein; SMART: Cold shock protein; KEGG: sfr:Sfri_3647 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 543425 4922570 Shew_0485 Shewanella loihica PV-4 cold-shock DNA-binding domain-containing protein YP_001092616.1 542808 R 323850 CDS YP_001092617.1 127511420 4923296 complement(543518..544534) 1 NC_009092.1 PFAM: permease; KEGG: sfr:Sfri_1725 permease; permease 544534 4923296 Shew_0486 Shewanella loihica PV-4 permease YP_001092617.1 543518 R 323850 CDS YP_001092618.1 127511421 4923301 complement(544562..544810) 1 NC_009092.1 TIGRFAM: redox-active disulfide protein 2; KEGG: mbu:Mbur_0943 redox-active disulfide protein 2; redox-active disulfide protein 2 544810 4923301 Shew_0487 Shewanella loihica PV-4 redox-active disulfide protein 2 YP_001092618.1 544562 R 323850 CDS YP_001092619.1 127511422 4923302 complement(544821..545225) 1 NC_009092.1 PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; ArsR family transcriptional regulator 545225 4923302 Shew_0488 Shewanella loihica PV-4 ArsR family transcriptional regulator YP_001092619.1 544821 R 323850 CDS YP_001092620.1 127511423 4923444 545503..545931 1 NC_009092.1 hypothetical protein 545931 4923444 Shew_0489 Shewanella loihica PV-4 hypothetical protein YP_001092620.1 545503 D 323850 CDS YP_001092621.1 127511424 4923467 546050..548077 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_3813 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 548077 4923467 Shew_0490 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001092621.1 546050 D 323850 CDS YP_001092622.1 127511425 4923534 complement(548159..548413) 1 NC_009092.1 KEGG: son:SO0721 hypothetical protein; hypothetical protein 548413 4923534 Shew_0491 Shewanella loihica PV-4 hypothetical protein YP_001092622.1 548159 R 323850 CDS YP_001092623.1 127511426 4923440 complement(548543..550135) 1 NC_009092.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 550135 4923440 Shew_0492 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001092623.1 548543 R 323850 CDS YP_001092624.1 127511427 4923550 complement(550297..550803) 1 NC_009092.1 KEGG: son:SO0720 hypothetical protein; hypothetical protein 550803 4923550 Shew_0493 Shewanella loihica PV-4 hypothetical protein YP_001092624.1 550297 R 323850 CDS YP_001092625.1 127511428 4923577 551047..551799 1 NC_009092.1 hypothetical protein 551799 4923577 Shew_0494 Shewanella loihica PV-4 hypothetical protein YP_001092625.1 551047 D 323850 CDS YP_001092626.1 127511429 4923643 551984..552685 1 NC_009092.1 KEGG: she:Shewmr4_3378 hypothetical protein; hypothetical protein 552685 4923643 Shew_0495 Shewanella loihica PV-4 hypothetical protein YP_001092626.1 551984 D 323850 CDS YP_001092627.1 127511430 4923644 complement(553040..554413) 1 NC_009092.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: shm:Shewmr7_3308 amino acid carrier protein; amino acid carrier protein 554413 4923644 Shew_0496 Shewanella loihica PV-4 amino acid carrier protein YP_001092627.1 553040 R 323850 CDS YP_001092628.1 127511431 4923647 555306..557003 1 NC_009092.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 557003 4923647 Shew_0497 Shewanella loihica PV-4 putative sulfate transporter YchM YP_001092628.1 555306 D 323850 CDS YP_001092629.1 127511432 4923729 complement(557009..557638) 1 NC_009092.1 KEGG: son:SO0492 hypothetical flavoprotein oxygenase; flavoprotein oxygenase 557638 4923729 Shew_0498 Shewanella loihica PV-4 flavoprotein oxygenase YP_001092629.1 557009 R 323850 CDS YP_001092630.1 127511433 4923873 557784..559136 1 NC_009092.1 KEGG: ilo:IL1431 Xaa-Pro aminopeptidase family enzyme; Xaa-Pro aminopeptidase family protein 559136 4923873 Shew_0499 Shewanella loihica PV-4 Xaa-Pro aminopeptidase family protein YP_001092630.1 557784 D 323850 CDS YP_001092631.1 127511434 4924273 559225..560241 1 NC_009092.1 KEGG: dps:DP1291 hypothetical protein; hypothetical protein 560241 4924273 Shew_0500 Shewanella loihica PV-4 hypothetical protein YP_001092631.1 559225 D 323850 CDS YP_001092632.1 127511435 4921658 560444..560728 1 NC_009092.1 PFAM: protein of unknown function DUF134; KEGG: son:SO0727 hypothetical protein; hypothetical protein 560728 4921658 Shew_0501 Shewanella loihica PV-4 hypothetical protein YP_001092632.1 560444 D 323850 CDS YP_001092633.1 127511436 4922655 560738..561265 1 NC_009092.1 KEGG: son:SO0728 hypothetical protein; hypothetical protein 561265 4922655 Shew_0502 Shewanella loihica PV-4 hypothetical protein YP_001092633.1 560738 D 323850 CDS YP_001092634.1 127511437 4923801 complement(561271..561612) 1 NC_009092.1 KEGG: shm:Shewmr7_0578 thioredoxin domain; thioredoxin domain-containing protein 561612 4923801 Shew_0503 Shewanella loihica PV-4 thioredoxin domain-containing protein YP_001092634.1 561271 R 323850 CDS YP_001092635.1 127511438 4923802 561877..563088 1 NC_009092.1 PFAM: NnrS family protein; KEGG: sfr:Sfri_3037 NnrS family protein; NnrS family protein 563088 4923802 Shew_0504 Shewanella loihica PV-4 NnrS family protein YP_001092635.1 561877 D 323850 CDS YP_001092636.1 127511439 4923237 563145..564503 1 NC_009092.1 PFAM: cytochrome c552; KEGG: sfr:Sfri_3036 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 564503 4923237 Shew_0505 Shewanella loihica PV-4 nitrite reductase YP_001092636.1 563145 D 323850 CDS YP_001092637.1 127511440 4923517 complement(564571..565488) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4154 transcriptional regulator, LysR family; LysR family transcriptional regulator 565488 4923517 Shew_0506 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092637.1 564571 R 323850 CDS YP_001092638.1 127511441 4923558 565616..566707 1 NC_009092.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO4153 N-ethylmaleimide reductase, putative; NADH:flavin oxidoreductase 566707 4923558 Shew_0507 Shewanella loihica PV-4 NADH:flavin oxidoreductase YP_001092638.1 565616 D 323850 CDS YP_001092639.1 127511442 4923912 complement(566781..567938) 1 NC_009092.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: she:Shewmr4_3514 sulphate transporter; xanthine/uracil/vitamin C permease 567938 4923912 Shew_0508 Shewanella loihica PV-4 xanthine/uracil/vitamin C permease YP_001092639.1 566781 R 323850 CDS YP_001092640.1 127511443 4924148 568204..568629 1 NC_009092.1 KEGG: vpa:VPA1145 hypothetical protein; hypothetical protein 568629 4924148 Shew_0509 Shewanella loihica PV-4 hypothetical protein YP_001092640.1 568204 D 323850 CDS YP_001092641.1 127511444 4920947 complement(568682..577120) 1 NC_009092.1 TIGRFAM: putative outer membrane adhesin like proteiin; KEGG: son:SO4149 RTX toxin, putative; outer membrane adhesin-like protein 577120 4920947 Shew_0510 Shewanella loihica PV-4 outer membrane adhesin-like protein YP_001092641.1 568682 R 323850 CDS YP_001092642.1 127511445 4921196 complement(577130..578455) 1 NC_009092.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4148 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein 578455 4921196 Shew_0511 Shewanella loihica PV-4 HlyD family type I secretion membrane fusion protein YP_001092642.1 577130 R 323850 CDS YP_001092643.1 127511446 4921197 complement(578448..580547) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4147 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 580547 4921197 Shew_0512 Shewanella loihica PV-4 ABC transporter-like protein YP_001092643.1 578448 R 323850 CDS YP_001092644.1 127511447 4921857 complement(580547..582205) 1 NC_009092.1 PFAM: ABC transporter-related protein; KEGG: son:SO4146 toxin secretion ABC transporter protein, HlyB family; ABC transporter-like protein 582205 4921857 Shew_0513 Shewanella loihica PV-4 ABC transporter-like protein YP_001092644.1 580547 R 323850 CDS YP_001092645.1 127511448 4921859 complement(582488..583894) 1 NC_009092.1 KEGG: shm:Shewmr7_0439 cytochrome c, putative; cytochrome c 583894 4921859 Shew_0514 Shewanella loihica PV-4 cytochrome c YP_001092645.1 582488 R 323850 CDS YP_001092646.1 127511449 4922422 complement(583939..585651) 1 NC_009092.1 KEGG: son:SO4143 hypothetical protein; hypothetical protein 585651 4922422 Shew_0515 Shewanella loihica PV-4 hypothetical protein YP_001092646.1 583939 R 323850 CDS YP_001092647.1 127511450 4922686 complement(585716..586045) 1 NC_009092.1 KEGG: shm:Shewmr7_0441 cytochrome c family protein; cytochrome c family protein 586045 4922686 Shew_0516 Shewanella loihica PV-4 cytochrome c family protein YP_001092647.1 585716 R 323850 CDS YP_001092648.1 127511451 4923714 586558..587754 1 NC_009092.1 KEGG: eca:ECA0549 putative plasmid transfer protein; putative plasmid transfer protein 587754 4923714 Shew_0517 Shewanella loihica PV-4 putative plasmid transfer protein YP_001092648.1 586558 D 323850 CDS YP_001092649.1 127511452 4921976 complement(587818..588558) 1 NC_009092.1 PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 588558 4921976 Shew_0518 Shewanella loihica PV-4 hypothetical protein YP_001092649.1 587818 R 323850 CDS YP_001092650.1 127511453 4920512 complement(588637..588951) 1 NC_009092.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 588951 4920512 Shew_0519 Shewanella loihica PV-4 transcriptional repressor protein MetJ YP_001092650.1 588637 R 323850 CDS YP_001092651.1 127511454 4920513 589176..590342 1 NC_009092.1 KEGG: she:Shewmr4_3439 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase 590342 4920513 Shew_0520 Shewanella loihica PV-4 O-succinylhomoserine (thiol)-lyase YP_001092651.1 589176 D 323850 CDS YP_001092652.1 127511455 4924078 590362..592755 1 NC_009092.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 592755 metL 4924078 metL Shewanella loihica PV-4 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_001092652.1 590362 D 323850 CDS YP_001092653.1 127511456 4920970 593019..593909 1 NC_009092.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 593909 metF 4920970 metF Shewanella loihica PV-4 5,10-methylenetetrahydrofolate reductase YP_001092653.1 593019 D 323850 CDS YP_001092654.1 127511457 4921805 594034..594633 1 NC_009092.1 KEGG: shm:Shewmr7_0519 cytochrome c family protein; cytochrome c family protein 594633 4921805 Shew_0523 Shewanella loihica PV-4 cytochrome c family protein YP_001092654.1 594034 D 323850 CDS YP_001092655.1 127511458 4922077 594644..595705 1 NC_009092.1 PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein; cytochrome c, class I 595705 4922077 Shew_0524 Shewanella loihica PV-4 cytochrome c, class I YP_001092655.1 594644 D 323850 CDS YP_001092656.1 127511459 4922078 595779..596003 1 NC_009092.1 KEGG: sdn:Sden_0645 hypothetical protein; hypothetical protein 596003 4922078 Shew_0525 Shewanella loihica PV-4 hypothetical protein YP_001092656.1 595779 D 323850 CDS YP_001092657.1 127511460 4923179 596035..596406 1 NC_009092.1 KEGG: sfr:Sfri_3540 hypothetical protein; hypothetical protein 596406 4923179 Shew_0526 Shewanella loihica PV-4 hypothetical protein YP_001092657.1 596035 D 323850 CDS YP_001092658.1 127511461 4923875 complement(596449..597303) 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 597303 4923875 Shew_0527 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001092658.1 596449 R 323850 CDS YP_001092659.1 127511462 4923876 complement(597398..598222) 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 598222 4923876 Shew_0528 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001092659.1 597398 R 323850 CDS YP_001092660.1 127511463 4920816 complement(598302..599129) 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 599129 4920816 Shew_0529 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001092660.1 598302 R 323850 CDS YP_001092661.1 127511464 4920742 599363..600490 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: pae:PA5145 hypothetical protein; FAD dependent oxidoreductase 600490 4920742 Shew_0530 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001092661.1 599363 D 323850 CDS YP_001092662.1 127511465 4921020 complement(600553..602352) 1 NC_009092.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_0528 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 602352 4921020 Shew_0531 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001092662.1 600553 R 323850 CDS YP_001092663.1 127511466 4922120 complement(602600..603628) 1 NC_009092.1 PFAM: peptidase M28; KEGG: shm:Shewmr7_0529 peptidase M28; peptidase M28 603628 4922120 Shew_0532 Shewanella loihica PV-4 peptidase M28 YP_001092663.1 602600 R 323850 CDS YP_001092664.1 127511467 4922421 complement(603761..606586) 1 NC_009092.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter-related protein; KEGG: shm:Shewmr7_0531 excinuclease ABC, A subunit; excinuclease ABC subunit A 606586 4922421 Shew_0533 Shewanella loihica PV-4 excinuclease ABC subunit A YP_001092664.1 603761 R 323850 CDS YP_001092665.1 127511468 4922836 606789..608156 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3420 major facilitator superfamily MFS_1; major facilitator superfamily transporter 608156 4922836 Shew_0534 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001092665.1 606789 D 323850 CDS YP_001092666.1 127511469 4923272 608229..608891 1 NC_009092.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sfr:Sfri_3710 single-strand binding protein; single-strand binding protein 608891 4923272 Shew_0535 Shewanella loihica PV-4 single-strand binding protein YP_001092666.1 608229 D 323850 CDS YP_001092667.1 127511470 4923273 609087..610076 1 NC_009092.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: shm:Shewmr7_0746 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 610076 4923273 Shew_0536 Shewanella loihica PV-4 tRNA-dihydrouridine synthase A YP_001092667.1 609087 D 323850 CDS YP_001092668.1 127511471 4924047 610364..610642 1 NC_009092.1 KEGG: shm:Shewmr7_0747 hypothetical protein; hypothetical protein 610642 4924047 Shew_0537 Shewanella loihica PV-4 hypothetical protein YP_001092668.1 610364 D 323850 CDS YP_001092669.1 127511472 4920531 610824..611030 1 NC_009092.1 PFAM: PspC domain protein; KEGG: she:Shewmr4_3241 phage shock protein C, PspC; phage shock protein C, PspC 611030 4920531 Shew_0538 Shewanella loihica PV-4 phage shock protein C, PspC YP_001092669.1 610824 D 323850 CDS YP_001092670.1 127511473 4920509 611049..611408 1 NC_009092.1 hypothetical protein 611408 4920509 Shew_0539 Shewanella loihica PV-4 hypothetical protein YP_001092670.1 611049 D 323850 CDS YP_001092671.1 127511474 4920465 complement(611424..612161) 1 NC_009092.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_0749 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 612161 4920465 Shew_0540 Shewanella loihica PV-4 enoyl-CoA hydratase/isomerase YP_001092671.1 611424 R 323850 CDS YP_001092672.1 127511475 4922499 612211..612678 1 NC_009092.1 PFAM: protein of unknown function DUF461; KEGG: shm:Shewmr7_0750 protein of unknown function DUF461; hypothetical protein 612678 4922499 Shew_0541 Shewanella loihica PV-4 hypothetical protein YP_001092672.1 612211 D 323850 CDS YP_001092673.1 127511476 4924132 612691..613662 1 NC_009092.1 KEGG: son:SO3906 hypothetical protein; hypothetical protein 613662 4924132 Shew_0542 Shewanella loihica PV-4 hypothetical protein YP_001092673.1 612691 D 323850 CDS YP_001092674.1 127511477 4921171 613667..614425 1 NC_009092.1 KEGG: she:Shewmr4_3237 hypothetical protein; hypothetical protein 614425 4921171 Shew_0543 Shewanella loihica PV-4 hypothetical protein YP_001092674.1 613667 D 323850 CDS YP_001092675.1 127511478 4921172 complement(614493..615839) 1 NC_009092.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 615839 tolC 4921172 tolC Shewanella loihica PV-4 outer membrane channel protein YP_001092675.1 614493 R 323850 CDS YP_001092676.1 127511479 4922591 616103..616711 1 NC_009092.1 PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_3235 nucleoside diphosphate pyrophosphatase; ADP-ribose diphosphatase 616711 4922591 Shew_0545 Shewanella loihica PV-4 ADP-ribose diphosphatase YP_001092676.1 616103 D 323850 CDS YP_001092677.1 127511480 4923183 616708..617154 1 NC_009092.1 PFAM: protein of unknown function DUF1249; KEGG: she:Shewmr4_3234 protein of unknown function DUF1249; hypothetical protein 617154 4923183 Shew_0546 Shewanella loihica PV-4 hypothetical protein YP_001092677.1 616708 D 323850 CDS YP_001092678.1 127511481 4921048 617164..618003 1 NC_009092.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: she:Shewmr4_3233 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein 618003 4921048 Shew_0547 Shewanella loihica PV-4 calcineurin phosphoesterase C-terminal domain-containing protein YP_001092678.1 617164 D 323850 CDS YP_001092679.1 127511482 4923299 618198..618776 1 NC_009092.1 PFAM: protein of unknown function UPF0227; KEGG: she:Shewmr4_3232 protein of unknown function UPF0227; hypothetical protein 618776 4923299 Shew_0548 Shewanella loihica PV-4 hypothetical protein YP_001092679.1 618198 D 323850 CDS YP_001092680.1 127511483 4921321 618825..620711 1 NC_009092.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 620711 4921321 Shew_0549 Shewanella loihica PV-4 DNA topoisomerase IV subunit B YP_001092680.1 618825 D 323850 CDS YP_001092681.1 127511484 4921871 620759..621925 1 NC_009092.1 KEGG: shm:Shewmr7_0759 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 621925 4921871 Shew_0550 Shewanella loihica PV-4 L-sorbosone dehydrogenase YP_001092681.1 620759 D 323850 CDS YP_001092682.1 127511485 4921913 621922..624189 1 NC_009092.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 624189 4921913 Shew_0551 Shewanella loihica PV-4 DNA topoisomerase IV subunit A YP_001092682.1 621922 D 323850 CDS YP_001092683.1 127511486 4921914 complement(624267..624458) 1 NC_009092.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sdn:Sden_3217 BFD-like (2Fe-2S)-binding region; BFD/(2Fe-2S)-binding domain-containing protein 624458 4921914 Shew_0552 Shewanella loihica PV-4 BFD/(2Fe-2S)-binding domain-containing protein YP_001092683.1 624267 R 323850 CDS YP_001092684.1 127511487 4922615 complement(624800..625726) 1 NC_009092.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: she:Shewmr4_0584 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 625726 4922615 Shew_0553 Shewanella loihica PV-4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001092684.1 624800 R 323850 CDS YP_001092685.1 127511488 4922522 complement(626221..626928) 1 NC_009092.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shm:Shewmr7_3444 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 626928 4922522 Shew_0554 Shewanella loihica PV-4 glycerophosphoryl diester phosphodiesterase YP_001092685.1 626221 R 323850 CDS YP_001092686.1 127511489 4923759 complement(626928..630110) 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_0587 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 630110 4923759 Shew_0555 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001092686.1 626928 R 323850 CDS YP_001092687.1 127511490 4921419 complement(630235..631125) 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_3442 protein of unknown function DUF6, transmembrane; hypothetical protein 631125 4921419 Shew_0556 Shewanella loihica PV-4 hypothetical protein YP_001092687.1 630235 R 323850 CDS YP_001092688.1 127511491 4924150 complement(631134..631994) 1 NC_009092.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 631994 psd 4924150 psd Shewanella loihica PV-4 phosphatidylserine decarboxylase YP_001092688.1 631134 R 323850 CDS YP_001092689.1 127511492 4920416 complement(632038..633051) 1 NC_009092.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 633051 4920416 Shew_0558 Shewanella loihica PV-4 ribosome-associated GTPase YP_001092689.1 632038 R 323850 CDS YP_001092690.1 127511493 4922887 633209..633754 1 NC_009092.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 633754 4922887 Shew_0559 Shewanella loihica PV-4 oligoribonuclease YP_001092690.1 633209 D 323850 CDS YP_001092691.1 127511494 4923259 635005..635460 1 NC_009092.1 KEGG: son:SO0595 hypothetical protein; hypothetical protein 635460 4923259 Shew_0560 Shewanella loihica PV-4 hypothetical protein YP_001092691.1 635005 D 323850 CDS YP_001092692.1 127511495 4921430 635897..637375 1 NC_009092.1 TIGRFAM: carbohydrate kinase, YjeF-related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: she:Shewmr4_0593 carbohydrate kinase, YjeF-related protein; carbohydrate kinase 637375 4921430 Shew_0561 Shewanella loihica PV-4 carbohydrate kinase YP_001092692.1 635897 D 323850 CDS YP_001092693.1 127511496 4921201 637476..637949 1 NC_009092.1 PFAM: protein of unknown function UPF0079; KEGG: she:Shewmr4_0594 protein of unknown function UPF0079; hypothetical protein 637949 4921201 Shew_0562 Shewanella loihica PV-4 hypothetical protein YP_001092693.1 637476 D 323850 CDS YP_001092694.1 127511497 4922525 637936..639255 1 NC_009092.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 639255 4922525 Shew_0563 Shewanella loihica PV-4 N-acetylmuramoyl-L-alanine amidase YP_001092694.1 637936 D 323850 CDS YP_001092695.1 127511498 4921930 639265..641160 1 NC_009092.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 641160 mutL 4921930 mutL Shewanella loihica PV-4 DNA mismatch repair protein YP_001092695.1 639265 D 323850 CDS YP_001092696.1 127511499 4922048 641153..642079 1 NC_009092.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 642079 miaA 4922048 miaA Shewanella loihica PV-4 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001092696.1 641153 D 323850 CDS YP_001092697.1 127511500 4922454 642172..642450 1 NC_009092.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: shm:Shewmr7_3432 RNA chaperone Hfq; RNA chaperone Hfq 642450 4922454 Shew_0566 Shewanella loihica PV-4 RNA chaperone Hfq YP_001092697.1 642172 D 323850 CDS YP_001092698.1 127511501 4922568 642471..643769 1 NC_009092.1 PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein 643769 4922568 Shew_0567 Shewanella loihica PV-4 HSR1-like GTP-binding protein YP_001092698.1 642471 D 323850 CDS YP_001092699.1 127511502 4922569 643813..644955 1 NC_009092.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3430 HflK protein; HflK protein 644955 4922569 Shew_0568 Shewanella loihica PV-4 HflK protein YP_001092699.1 643813 D 323850 CDS YP_001092700.1 127511503 4923177 644958..645836 1 NC_009092.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3429 HflC protein; HflC protein 645836 4923177 Shew_0569 Shewanella loihica PV-4 HflC protein YP_001092700.1 644958 D 323850 CDS YP_001092701.1 127511504 4922122 646171..646761 1 NC_009092.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: shm:Shewmr7_3428 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit 646761 4922122 Shew_0570 Shewanella loihica PV-4 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001092701.1 646171 D 323850 CDS YP_001092702.1 127511505 4922230 646761..647975 1 NC_009092.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: shm:Shewmr7_3427 cytochrome b/b6, N-terminal domain protein; cytochrome b/b6 domain-containing protein 647975 4922230 Shew_0571 Shewanella loihica PV-4 cytochrome b/b6 domain-containing protein YP_001092702.1 646761 D 323850 CDS YP_001092703.1 127511506 4921483 647975..648676 1 NC_009092.1 PFAM: cytochrome c1; KEGG: shm:Shewmr7_3426 cytochrome c1; cytochrome c1 648676 4921483 Shew_0572 Shewanella loihica PV-4 cytochrome c1 YP_001092703.1 647975 D 323850 CDS YP_001092704.1 127511507 4921867 648785..649414 1 NC_009092.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 649414 sspA 4921867 sspA Shewanella loihica PV-4 stringent starvation protein A YP_001092704.1 648785 D 323850 CDS YP_001092705.1 127511508 4923319 649416..649874 1 NC_009092.1 PFAM: Stringent starvation protein B; KEGG: shm:Shewmr7_3424 stringent starvation protein B; ClpXP protease specificity-enhancing factor 649874 4923319 Shew_0574 Shewanella loihica PV-4 ClpXP protease specificity-enhancing factor YP_001092705.1 649416 D 323850 CDS YP_001092706.1 127511509 4922765 650080..650667 1 NC_009092.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; glutamine amidotransferase of anthranilate synthase 650667 4922765 Shew_0575 Shewanella loihica PV-4 glutamine amidotransferase of anthranilate synthase YP_001092706.1 650080 D 323850 CDS YP_001092707.1 127511510 4922766 650838..653324 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: she:Shewmr4_0608 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 653324 4922766 Shew_0576 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001092707.1 650838 D 323850 CDS YP_001092708.1 127511511 4920640 653435..654580 1 NC_009092.1 PFAM: HDOD; KEGG: son:SO0615 hypothetical protein; putative signal transduction protein 654580 4920640 Shew_0577 Shewanella loihica PV-4 putative signal transduction protein YP_001092708.1 653435 D 323850 CDS YP_001092709.1 127511512 4920604 655195..656412 1 NC_009092.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 656412 argD 4920604 argD Shewanella loihica PV-4 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_001092709.1 655195 D 323850 CDS YP_001092710.1 127511513 4923841 656549..657568 1 NC_009092.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase; arginine N-succinyltransferase 657568 4923841 Shew_0579 Shewanella loihica PV-4 arginine N-succinyltransferase YP_001092710.1 656549 D 323850 CDS YP_001092711.1 127511514 4923603 657575..659038 1 NC_009092.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 659038 astD 4923603 astD Shewanella loihica PV-4 succinylglutamic semialdehyde dehydrogenase YP_001092711.1 657575 D 323850 CDS YP_001092712.1 127511515 4922770 659179..659979 1 NC_009092.1 KEGG: shm:Shewmr7_3416 hypothetical protein; hypothetical protein 659979 4922770 Shew_0581 Shewanella loihica PV-4 hypothetical protein YP_001092712.1 659179 D 323850 CDS YP_001092713.1 127511516 4921409 complement(660077..661414) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 661414 4921409 Shew_0582 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001092713.1 660077 R 323850 CDS YP_001092714.1 127511517 4920849 complement(661411..662085) 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; two component transcriptional regulator 662085 4920849 Shew_0583 Shewanella loihica PV-4 two component transcriptional regulator YP_001092714.1 661411 R 323850 CDS YP_001092715.1 127511518 4920850 complement(662196..662534) 1 NC_009092.1 KEGG: shm:Shewmr7_3413 hypothetical protein; hypothetical protein 662534 4920850 Shew_0584 Shewanella loihica PV-4 hypothetical protein YP_001092715.1 662196 R 323850 CDS YP_001092716.1 127511519 4920946 complement(662616..663251) 1 NC_009092.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 663251 4920946 Shew_0585 Shewanella loihica PV-4 cAMP-regulatory protein YP_001092716.1 662616 R 323850 CDS YP_001092717.1 127511520 4920568 663695..664474 1 NC_009092.1 KEGG: sfr:Sfri_3291 tetratricopeptide TPR_2 repeat protein; hypothetical protein 664474 4920568 Shew_0586 Shewanella loihica PV-4 hypothetical protein YP_001092717.1 663695 D 323850 CDS YP_001092718.1 127511521 4920882 complement(664811..665698) 1 NC_009092.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase 665698 4920882 Shew_0587 Shewanella loihica PV-4 phosphoribulokinase YP_001092718.1 664811 R 323850 CDS YP_001092719.1 127511522 4920942 complement(665782..666045) 1 NC_009092.1 PFAM: protein of unknown function UPF0270; KEGG: sdn:Sden_3187 protein of unknown function UPF0270; hypothetical protein 666045 4920942 Shew_0588 Shewanella loihica PV-4 hypothetical protein YP_001092719.1 665782 R 323850 CDS YP_001092720.1 127511523 4921662 complement(666048..667031) 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_0736 alpha/beta hydrolase fold; alpha/beta hydrolase 667031 4921662 Shew_0589 Shewanella loihica PV-4 alpha/beta hydrolase YP_001092720.1 666048 R 323850 CDS YP_001092721.1 127511524 4923263 667166..667672 1 NC_009092.1 KEGG: son:SO0881 hypothetical protein; hypothetical protein 667672 4923263 Shew_0590 Shewanella loihica PV-4 hypothetical protein YP_001092721.1 667166 D 323850 CDS YP_001092722.1 127511525 4920659 667823..669412 1 NC_009092.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 669412 4920659 Shew_0591 Shewanella loihica PV-4 glucose-methanol-choline oxidoreductase YP_001092722.1 667823 D 323850 CDS YP_001092723.1 127511526 4920660 complement(669469..669918) 1 NC_009092.1 KEGG: sfr:Sfri_3285 hypothetical protein; hypothetical protein 669918 4920660 Shew_0592 Shewanella loihica PV-4 hypothetical protein YP_001092723.1 669469 R 323850 CDS YP_001092724.1 127511527 4922144 complement(669986..671896) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3281 ABC transporter-related protein; ABC transporter-like protein 671896 4922144 Shew_0593 Shewanella loihica PV-4 ABC transporter-like protein YP_001092724.1 669986 R 323850 CDS YP_001092725.1 127511528 4923536 672071..672271 1 NC_009092.1 KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein 672271 4923536 Shew_0594 Shewanella loihica PV-4 hypothetical protein YP_001092725.1 672071 D 323850 CDS YP_001092726.1 127511529 4921000 complement(672337..672648) 1 NC_009092.1 hypothetical protein 672648 4921000 Shew_0595 Shewanella loihica PV-4 hypothetical protein YP_001092726.1 672337 R 323850 CDS YP_001092727.1 127511530 4923963 complement(672749..674671) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_1439 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 674671 4923963 Shew_0596 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001092727.1 672749 R 323850 CDS YP_001092728.1 127511531 4920687 674928..676355 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: bth:BT0821 putative permease; major facilitator superfamily transporter 676355 4920687 Shew_0597 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001092728.1 674928 D 323850 CDS YP_001092729.1 127511532 4921019 676581..677987 1 NC_009092.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 677987 4921019 Shew_0598 Shewanella loihica PV-4 ATP-dependent RNA helicase DbpA YP_001092729.1 676581 D 323850 CDS YP_001092730.1 127511533 4921533 678532..679308 1 NC_009092.1 KEGG: btk:BT9727_0331 hypothetical protein; hypothetical protein 679308 4921533 Shew_0599 Shewanella loihica PV-4 hypothetical protein YP_001092730.1 678532 D 323850 CDS YP_001092731.1 127511534 4921534 679374..679688 1 NC_009092.1 hypothetical protein 679688 4921534 Shew_0600 Shewanella loihica PV-4 hypothetical protein YP_001092731.1 679374 D 323850 CDS YP_001092732.1 127511535 4923934 680283..680669 1 NC_009092.1 KEGG: net:Neut_1865 hypothetical protein; hypothetical protein 680669 4923934 Shew_0601 Shewanella loihica PV-4 hypothetical protein YP_001092732.1 680283 D 323850 CDS YP_001092733.1 127511536 4923839 681505..682158 1 NC_009092.1 PFAM: Methyltransferase type 12; KEGG: hch:HCH_01556 SAM-dependent methyltransferase; type 12 methyltransferase 682158 4923839 Shew_0602 Shewanella loihica PV-4 type 12 methyltransferase YP_001092733.1 681505 D 323850 CDS YP_001092734.1 127511537 4921358 complement(682183..682602) 1 NC_009092.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: she:Shewmr4_0739 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 682602 4921358 Shew_0603 Shewanella loihica PV-4 glutathione-dependent formaldehyde-activating protein YP_001092734.1 682183 R 323850 CDS YP_001092735.1 127511538 4920972 complement(682776..684251) 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 684251 4920972 Shew_0604 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001092735.1 682776 R 323850 CDS YP_001092736.1 127511539 4920770 684515..684850 1 NC_009092.1 KEGG: sfr:Sfri_0822 hypothetical protein; hypothetical protein 684850 4920770 Shew_0605 Shewanella loihica PV-4 hypothetical protein YP_001092736.1 684515 D 323850 CDS YP_001092737.1 127511540 4923274 complement(684935..685876) 1 NC_009092.1 PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_3442 polysulphide reductase, NrfD; polysulfide reductase NrfD 685876 4923274 Shew_0606 Shewanella loihica PV-4 polysulfide reductase NrfD YP_001092737.1 684935 R 323850 CDS YP_001092738.1 127511541 4922676 complement(685873..686445) 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0508 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 686445 4922676 Shew_0607 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001092738.1 685873 R 323850 CDS YP_001092739.1 127511542 4922677 complement(686458..688740) 1 NC_009092.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_3444 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 688740 4922677 Shew_0608 Shewanella loihica PV-4 molybdopterin oxidoreductase YP_001092739.1 686458 R 323850 CDS YP_001092740.1 127511543 4920694 complement(689031..689630) 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator; two component LuxR family transcriptional regulator 689630 4920694 Shew_0609 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001092740.1 689031 R 323850 CDS YP_001092741.1 127511544 4920872 689834..691714 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 691714 4920872 Shew_0610 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001092741.1 689834 D 323850 CDS YP_001092742.1 127511545 4920999 692107..692814 1 NC_009092.1 hypothetical protein 692814 4920999 Shew_0611 Shewanella loihica PV-4 hypothetical protein YP_001092742.1 692107 D 323850 CDS YP_001092743.1 127511546 4921170 692873..693304 1 NC_009092.1 hypothetical protein 693304 4921170 Shew_0612 Shewanella loihica PV-4 hypothetical protein YP_001092743.1 692873 D 323850 CDS YP_001092744.1 127511547 4921433 693986..695749 1 NC_009092.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 695749 4921433 Shew_0613 Shewanella loihica PV-4 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_001092744.1 693986 D 323850 CDS YP_001092745.1 127511548 4921492 695749..697524 1 NC_009092.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 697524 4921492 Shew_0614 Shewanella loihica PV-4 cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_001092745.1 695749 D 323850 CDS YP_001092746.1 127511549 4922051 complement(697679..700858) 1 NC_009092.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 700858 4922051 Shew_0615 Shewanella loihica PV-4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001092746.1 697679 R 323850 CDS YP_001092747.1 127511550 4922052 complement(701190..701738) 1 NC_009092.1 SMART: SH3 domain protein domain protein; KEGG: shm:Shewmr7_0851 SH3 domain protein domain protein; SH3 domain-containing protein 701738 4922052 Shew_0616 Shewanella loihica PV-4 SH3 domain-containing protein YP_001092747.1 701190 R 323850 CDS YP_001092748.1 127511551 4923266 complement(701995..703263) 1 NC_009092.1 PFAM: phosphate transporter; KEGG: sdn:Sden_0691 phosphate transporter; phosphate transporter 703263 4923266 Shew_0617 Shewanella loihica PV-4 phosphate transporter YP_001092748.1 701995 R 323850 CDS YP_001092749.1 127511552 4922577 complement(703288..703968) 1 NC_009092.1 PFAM: protein of unknown function DUF47; KEGG: sfr:Sfri_0565 protein of unknown function DUF47; hypothetical protein 703968 4922577 Shew_0618 Shewanella loihica PV-4 hypothetical protein YP_001092749.1 703288 R 323850 CDS YP_001092750.1 127511553 4923189 704222..705709 1 NC_009092.1 PFAM: adenylate cyclase; KEGG: she:Shewmr4_3118 adenylate cyclase; adenylate cyclase 705709 4923189 Shew_0619 Shewanella loihica PV-4 adenylate cyclase YP_001092750.1 704222 D 323850 CDS YP_001092751.1 127511554 4923606 complement(705768..706562) 1 NC_009092.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: sfr:Sfri_3269 ion transport 2 domain protein; ion transport 2 domain-containing protein 706562 4923606 Shew_0620 Shewanella loihica PV-4 ion transport 2 domain-containing protein YP_001092751.1 705768 R 323850 CDS YP_001092752.1 127511555 4923680 complement(706643..706975) 1 NC_009092.1 KEGG: shm:Shewmr7_0856 hypothetical protein; hypothetical protein 706975 4923680 Shew_0621 Shewanella loihica PV-4 hypothetical protein YP_001092752.1 706643 R 323850 CDS YP_001092753.1 127511556 4923730 complement(707036..707680) 1 NC_009092.1 KEGG: son:SO3766 hypothetical protein; hypothetical protein 707680 4923730 Shew_0622 Shewanella loihica PV-4 hypothetical protein YP_001092753.1 707036 R 323850 CDS YP_001092754.1 127511557 4923138 complement(707888..708574) 1 NC_009092.1 PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA 708574 4923138 Shew_0623 Shewanella loihica PV-4 phage shock protein A, PspA YP_001092754.1 707888 R 323850 CDS YP_001092755.1 127511558 4923139 complement(708645..709058) 1 NC_009092.1 KEGG: shm:Shewmr7_0859 hypothetical protein; hypothetical protein 709058 4923139 Shew_0624 Shewanella loihica PV-4 hypothetical protein YP_001092755.1 708645 R 323850 CDS YP_001092756.1 127511559 4924250 complement(709149..710876) 1 NC_009092.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 710876 4924250 Shew_0625 Shewanella loihica PV-4 spermidine synthase YP_001092756.1 709149 R 323850 CDS YP_001092757.1 127511560 4922579 complement(710890..711789) 1 NC_009092.1 KEGG: sfr:Sfri_3263 protein of unknown function DUF350; hypothetical protein 711789 4922579 Shew_0626 Shewanella loihica PV-4 hypothetical protein YP_001092757.1 710890 R 323850 CDS YP_001092758.1 127511561 4920555 complement(711801..712757) 1 NC_009092.1 KEGG: she:Shewmr4_3110 hypothetical protein; hypothetical protein 712757 4920555 Shew_0627 Shewanella loihica PV-4 hypothetical protein YP_001092758.1 711801 R 323850 CDS YP_001092759.1 127511562 4920773 713023..715893 1 NC_009092.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 715893 4920773 Shew_0628 Shewanella loihica PV-4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001092759.1 713023 D 323850 CDS YP_001092760.1 127511563 4920823 715941..716714 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: vvy:VV1499 hypothetical protein; extracellular solute-binding protein 716714 4920823 Shew_0629 Shewanella loihica PV-4 extracellular solute-binding protein YP_001092760.1 715941 D 323850 CDS YP_001092761.1 127511564 4921292 complement(716717..717529) 1 NC_009092.1 PFAM: conserved hypothetical protein 245; KEGG: vpa:VP1159 putative ABC transport system permease protein; hypothetical protein 717529 4921292 Shew_0630 Shewanella loihica PV-4 hypothetical protein YP_001092761.1 716717 R 323850 CDS YP_001092762.1 127511565 4922096 complement(717533..718699) 1 NC_009092.1 PFAM: AFG1-family ATPase; KEGG: shm:Shewmr7_0870 AFG1-family ATPase; AFG1 family ATPase 718699 4922096 Shew_0631 Shewanella loihica PV-4 AFG1 family ATPase YP_001092762.1 717533 R 323850 CDS YP_001092763.1 127511566 4922097 complement(718786..720231) 1 NC_009092.1 PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_0594 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 720231 4922097 Shew_0632 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001092763.1 718786 R 323850 CDS YP_001092764.1 127511567 4922369 complement(720299..721741) 1 NC_009092.1 KEGG: sdn:Sden_2001 hypothetical protein; hypothetical protein 721741 4922369 Shew_0633 Shewanella loihica PV-4 hypothetical protein YP_001092764.1 720299 R 323850 CDS YP_001092765.1 127511568 4922595 complement(721839..722240) 1 NC_009092.1 KEGG: she:Shewmr4_3460 hypothetical protein; hypothetical protein 722240 4922595 Shew_0634 Shewanella loihica PV-4 hypothetical protein YP_001092765.1 721839 R 323850 CDS YP_001092766.1 127511569 4922816 complement(722474..723169) 1 NC_009092.1 hypothetical protein 723169 4922816 Shew_0635 Shewanella loihica PV-4 hypothetical protein YP_001092766.1 722474 R 323850 CDS YP_001092767.1 127511570 4922685 complement(723307..723765) 1 NC_009092.1 hypothetical protein 723765 4922685 Shew_0636 Shewanella loihica PV-4 hypothetical protein YP_001092767.1 723307 R 323850 CDS YP_001092768.1 127511571 4923208 complement(723795..724472) 1 NC_009092.1 KEGG: sfr:Sfri_0597 hypothetical protein; hypothetical protein 724472 4923208 Shew_0637 Shewanella loihica PV-4 hypothetical protein YP_001092768.1 723795 R 323850 CDS YP_001092769.1 127511572 4923646 complement(724655..728878) 1 NC_009092.1 PFAM: cell surface receptor IPT/TIG domain protein; KEGG: hwa:HQ3601A cell surface calcium-binding acidic-repeat protein; cell surface receptor IPT/TIG domain-containing protein 728878 4923646 Shew_0638 Shewanella loihica PV-4 cell surface receptor IPT/TIG domain-containing protein YP_001092769.1 724655 R 323850 CDS YP_001092770.1 127511573 4923829 complement(728957..729604) 1 NC_009092.1 KEGG: bxe:Bxe_B2925 hypothetical protein; hypothetical protein 729604 4923829 Shew_0639 Shewanella loihica PV-4 hypothetical protein YP_001092770.1 728957 R 323850 CDS YP_001092771.1 127511574 4923830 complement(729637..730119) 1 NC_009092.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2604 TPR repeat; hypothetical protein 730119 4923830 Shew_0640 Shewanella loihica PV-4 hypothetical protein YP_001092771.1 729637 R 323850 CDS YP_001092772.1 127511575 4923872 complement(730107..730451) 1 NC_009092.1 PFAM: protein of unknown function DUF192; KEGG: bba:Bd0471 putative secreted protein; hypothetical protein 730451 4923872 Shew_0641 Shewanella loihica PV-4 hypothetical protein YP_001092772.1 730107 R 323850 CDS YP_001092773.1 127511576 4923785 complement(730453..731316) 1 NC_009092.1 PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2923 putative type II secretion system protein F; type II secretion system protein 731316 4923785 Shew_0642 Shewanella loihica PV-4 type II secretion system protein YP_001092773.1 730453 R 323850 CDS YP_001092774.1 127511577 4924105 complement(731325..732176) 1 NC_009092.1 PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2922 putative type II secretion system protein F; type II secretion system protein 732176 4924105 Shew_0643 Shewanella loihica PV-4 type II secretion system protein YP_001092774.1 731325 R 323850 CDS YP_001092775.1 127511578 4924271 complement(732169..733878) 1 NC_009092.1 PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E; FHA domain-containing protein 733878 4924271 Shew_0644 Shewanella loihica PV-4 FHA domain-containing protein YP_001092775.1 732169 R 323850 CDS YP_001092776.1 127511579 4922979 complement(733888..735198) 1 NC_009092.1 PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_B2920 putative type II and III secretion system outermembrane protein, secretin; type II and III secretion system protein 735198 4922979 Shew_0645 Shewanella loihica PV-4 type II and III secretion system protein YP_001092776.1 733888 R 323850 CDS YP_001092777.1 127511580 4920599 complement(735195..736091) 1 NC_009092.1 PFAM: SAF domain; KEGG: bxe:Bxe_B2919 putative Flp pilus assembly CpaB; SAF domain-containing protein 736091 4920599 Shew_0646 Shewanella loihica PV-4 SAF domain-containing protein YP_001092777.1 735195 R 323850 CDS YP_001092778.1 127511581 4923648 complement(736106..736297) 1 NC_009092.1 hypothetical protein 736297 4923648 Shew_0647 Shewanella loihica PV-4 hypothetical protein YP_001092778.1 736106 R 323850 CDS YP_001092779.1 127511582 4923649 complement(736305..736976) 1 NC_009092.1 KEGG: bxe:Bxe_B2917 hypothetical protein; hypothetical protein 736976 4923649 Shew_0648 Shewanella loihica PV-4 hypothetical protein YP_001092779.1 736305 R 323850 CDS YP_001092780.1 127511583 4920591 complement(736981..737841) 1 NC_009092.1 KEGG: bxe:Bxe_B2916 hypothetical protein; hypothetical protein 737841 4920591 Shew_0649 Shewanella loihica PV-4 hypothetical protein YP_001092780.1 736981 R 323850 CDS YP_001092781.1 127511584 4921150 complement(737841..739199) 1 NC_009092.1 KEGG: ilo:IL0909 uncharacterized secreted protein; hypothetical protein 739199 4921150 Shew_0650 Shewanella loihica PV-4 hypothetical protein YP_001092781.1 737841 R 323850 CDS YP_001092782.1 127511585 4921420 complement(739274..739582) 1 NC_009092.1 KEGG: ilo:IL0910 Flp/Fap pilin homolog; hypothetical protein 739582 4921420 Shew_0651 Shewanella loihica PV-4 hypothetical protein YP_001092782.1 739274 R 323850 CDS YP_001092783.1 127511586 4921576 complement(739685..739960) 1 NC_009092.1 KEGG: ilo:IL0910 Flp/Fap pilin homolog; hypothetical protein 739960 4921576 Shew_0652 Shewanella loihica PV-4 hypothetical protein YP_001092783.1 739685 R 323850 CDS YP_001092784.1 127511587 4922172 complement(740084..740704) 1 NC_009092.1 PFAM: regulatory protein, LuxR; KEGG: sfr:Sfri_0602 transcriptional regulator, LuxR family protein; LuxR family transcriptional regulator 740704 4922172 Shew_0653 Shewanella loihica PV-4 LuxR family transcriptional regulator YP_001092784.1 740084 R 323850 CDS YP_001092785.1 127511588 4922432 complement(741108..742550) 1 NC_009092.1 PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_3094 peptidase M16 domain protein; peptidase M16 domain-containing protein 742550 4922432 Shew_0654 Shewanella loihica PV-4 peptidase M16 domain-containing protein YP_001092785.1 741108 R 323850 CDS YP_001092786.1 127511589 4922609 complement(742547..743971) 1 NC_009092.1 PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_3093 peptidase M16 domain protein; peptidase M16 domain-containing protein 743971 4922609 Shew_0655 Shewanella loihica PV-4 peptidase M16 domain-containing protein YP_001092786.1 742547 R 323850 CDS YP_001092787.1 127511590 4922610 complement(743996..745531) 1 NC_009092.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 745531 4922610 Shew_0656 Shewanella loihica PV-4 anaerobic nitric oxide reductase transcriptional regulator YP_001092787.1 743996 R 323850 CDS YP_001092788.1 127511591 4922956 complement(745706..747997) 1 NC_009092.1 KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 747997 4922956 Shew_0657 Shewanella loihica PV-4 putative nitric oxide reductase (subunit B) transmembrane protein YP_001092788.1 745706 R 323850 CDS YP_001092789.1 127511592 4923145 complement(748289..749215) 1 NC_009092.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: sfr:Sfri_3201 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 749215 4923145 Shew_0658 Shewanella loihica PV-4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_001092789.1 748289 R 323850 CDS YP_001092790.1 127511593 4923482 749321..750751 1 NC_009092.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 750751 4923482 Shew_0659 Shewanella loihica PV-4 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001092790.1 749321 D 323850 CDS YP_001092791.1 127511594 4923957 750748..751584 1 NC_009092.1 KEGG: son:SO3744 hypothetical protein; hypothetical protein 751584 4923957 Shew_0660 Shewanella loihica PV-4 hypothetical protein YP_001092791.1 750748 D 323850 CDS YP_001092792.1 127511595 4922228 complement(751655..751969) 1 NC_009092.1 KEGG: sfr:Sfri_3497 hypothetical protein; hypothetical protein 751969 4922228 Shew_0661 Shewanella loihica PV-4 hypothetical protein YP_001092792.1 751655 R 323850 CDS YP_001092793.1 127511596 4922361 complement(752204..753586) 1 NC_009092.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: abo:ABO_1327 pyridine nucleotide transhydrogenase, B subunit; NAD(P) transhydrogenase subunit beta 753586 4922361 Shew_0662 Shewanella loihica PV-4 NAD(P) transhydrogenase subunit beta YP_001092793.1 752204 R 323850 CDS YP_001092794.1 127511597 4922566 complement(753593..753868) 1 NC_009092.1 KEGG: abo:ABO_1328 oxidoreductase; oxidoreductase 753868 4922566 Shew_0663 Shewanella loihica PV-4 oxidoreductase YP_001092794.1 753593 R 323850 CDS YP_001092795.1 127511598 4922567 complement(753868..755037) 1 NC_009092.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: abo:ABO_1329 pyridine nucleotide transhydrogenase A subunit; NAD(P) transhydrogenase subunit alpha 755037 4922567 Shew_0664 Shewanella loihica PV-4 NAD(P) transhydrogenase subunit alpha YP_001092795.1 753868 R 323850 CDS YP_001092796.1 127511599 4923005 755369..757153 1 NC_009092.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) flavoprotein, alpha chain 757153 4923005 Shew_0665 Shewanella loihica PV-4 sulfite reductase (NADPH) flavoprotein, alpha chain YP_001092796.1 755369 D 323850 CDS YP_001092797.1 127511600 4922672 757231..758928 1 NC_009092.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 758928 4922672 Shew_0666 Shewanella loihica PV-4 sulfite reductase subunit beta YP_001092797.1 757231 D 323850 CDS YP_001092798.1 127511601 4923641 758921..759673 1 NC_009092.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 759673 4923641 Shew_0667 Shewanella loihica PV-4 phosphoadenosine phosphosulfate reductase YP_001092798.1 758921 D 323850 CDS YP_001092799.1 127511602 4924093 760155..761870 1 NC_009092.1 KEGG: son:SO3733 hypothetical protein; hypothetical protein 761870 4924093 Shew_0668 Shewanella loihica PV-4 hypothetical protein YP_001092799.1 760155 D 323850 CDS YP_001092800.1 127511603 4922426 complement(761972..762502) 1 NC_009092.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_2601 antioxidant, AhpC/Tsa family; redoxin domain-containing protein 762502 4922426 Shew_0669 Shewanella loihica PV-4 redoxin domain-containing protein YP_001092800.1 761972 R 323850 CDS YP_001092801.1 127511604 4923205 complement(762619..764085) 1 NC_009092.1 KEGG: she:Shewmr4_3075 hypothetical protein; hypothetical protein 764085 4923205 Shew_0670 Shewanella loihica PV-4 hypothetical protein YP_001092801.1 762619 R 323850 CDS YP_001092802.1 127511605 4923476 complement(764130..765056) 1 NC_009092.1 PFAM: phospholipase A1; KEGG: sdn:Sden_0955 phospholipase A1; phospholipase A(1) 765056 4923476 Shew_0671 Shewanella loihica PV-4 phospholipase A(1) YP_001092802.1 764130 R 323850 CDS YP_001092803.1 127511606 4923477 765289..766110 1 NC_009092.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0899 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 766110 4923477 Shew_0672 Shewanella loihica PV-4 uroporphyrin-III C-methyltransferase YP_001092803.1 765289 D 323850 CDS YP_001092804.1 127511607 4920829 complement(766119..766955) 1 NC_009092.1 KEGG: shm:Shewmr7_0904 hypothetical protein; hypothetical protein 766955 4920829 Shew_0673 Shewanella loihica PV-4 hypothetical protein YP_001092804.1 766119 R 323850 CDS YP_001092805.1 127511608 4920436 complement(767054..768220) 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3067 major facilitator superfamily MFS_1; major facilitator superfamily transporter 768220 4920436 Shew_0674 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001092805.1 767054 R 323850 CDS YP_001092806.1 127511609 4921339 768423..769868 1 NC_009092.1 KEGG: sfr:Sfri_0810 hypothetical protein; hypothetical protein 769868 4921339 Shew_0675 Shewanella loihica PV-4 hypothetical protein YP_001092806.1 768423 D 323850 CDS YP_001092807.1 127511610 4921044 769906..771054 1 NC_009092.1 KEGG: sfr:Sfri_0811 putative lipoprotein; putative lipoprotein 771054 4921044 Shew_0676 Shewanella loihica PV-4 putative lipoprotein YP_001092807.1 769906 D 323850 CDS YP_001092808.1 127511611 4922607 771168..772799 1 NC_009092.1 PFAM: protein of unknown function DUF1111; KEGG: sdn:Sden_0723 protein of unknown function DUF1111; hypothetical protein 772799 4922607 Shew_0677 Shewanella loihica PV-4 hypothetical protein YP_001092808.1 771168 D 323850 CDS YP_001092809.1 127511612 4923908 772995..773516 1 NC_009092.1 KEGG: shm:Shewmr7_0906 protoporphyrinogen oxidase; protoporphyrinogen oxidase 773516 4923908 Shew_0678 Shewanella loihica PV-4 protoporphyrinogen oxidase YP_001092809.1 772995 D 323850 CDS YP_001092810.1 127511613 4923712 773581..774105 1 NC_009092.1 KEGG: she:Shewmr4_3065 hypothetical protein; hypothetical protein 774105 4923712 Shew_0679 Shewanella loihica PV-4 hypothetical protein YP_001092810.1 773581 D 323850 CDS YP_001092811.1 127511614 4923713 complement(774193..775065) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfl:PFL_5747 transcriptional regulator, LysR family; LysR family transcriptional regulator 775065 4923713 Shew_0680 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092811.1 774193 R 323850 CDS YP_001092812.1 127511615 4921312 775175..776254 1 NC_009092.1 KEGG: vch:VCA0877 hydrolase, putative; penicillin V acylase-like protein 776254 4921312 Shew_0681 Shewanella loihica PV-4 penicillin V acylase-like protein YP_001092812.1 775175 D 323850 CDS YP_001092813.1 127511616 4921432 complement(776330..777433) 1 NC_009092.1 KEGG: vvu:VV20703 permease of the major facilitator superfamily; major facilitator superfamily permease 777433 4921432 Shew_0682 Shewanella loihica PV-4 major facilitator superfamily permease YP_001092813.1 776330 R 323850 CDS YP_001092814.1 127511617 4923185 complement(777423..778487) 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: vvu:VV13195 multidrug resistance efflux pump; secretion protein HlyD family protein 778487 4923185 Shew_0683 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001092814.1 777423 R 323850 CDS YP_001092815.1 127511618 4920949 778885..779292 1 NC_009092.1 hypothetical protein 779292 4920949 Shew_0684 Shewanella loihica PV-4 hypothetical protein YP_001092815.1 778885 D 323850 CDS YP_001092816.1 127511619 4921205 779359..780066 1 NC_009092.1 KEGG: deh:cbdb_A1523 hypothetical membrane protein; hypothetical protein 780066 4921205 Shew_0685 Shewanella loihica PV-4 hypothetical protein YP_001092816.1 779359 D 323850 CDS YP_001092817.1 127511620 4922348 complement(780155..780817) 1 NC_009092.1 PFAM: DSBA oxidoreductase; KEGG: shm:Shewmr7_0909 DsbA oxidoreductase; DSBA oxidoreductase 780817 4922348 Shew_0686 Shewanella loihica PV-4 DSBA oxidoreductase YP_001092817.1 780155 R 323850 CDS YP_001092818.1 127511621 4923335 complement(781002..781661) 1 NC_009092.1 PFAM: heat shock protein DnaJ domain protein; KEGG: sdn:Sden_0724 heat shock protein DnaJ-like protein; heat shock protein DnaJ domain-containing protein 781661 4923335 Shew_0687 Shewanella loihica PV-4 heat shock protein DnaJ domain-containing protein YP_001092818.1 781002 R 323850 CDS YP_001092819.1 127511622 4923336 complement(781824..782477) 1 NC_009092.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 782477 4923336 Shew_0688 Shewanella loihica PV-4 dihydropteridine reductase YP_001092819.1 781824 R 323850 CDS YP_001092820.1 127511623 4920852 782796..783626 1 NC_009092.1 KEGG: son:SO1045 hypothetical protein; hypothetical protein 783626 4920852 Shew_0689 Shewanella loihica PV-4 hypothetical protein YP_001092820.1 782796 D 323850 CDS YP_001092821.1 127511624 4921149 783798..784871 1 NC_009092.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_0969 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 784871 4921149 Shew_0690 Shewanella loihica PV-4 endonuclease/exonuclease/phosphatase YP_001092821.1 783798 D 323850 CDS YP_001092822.1 127511625 4920976 785061..786194 1 NC_009092.1 PFAM: protein of unknown function UPF0118; KEGG: ppr:PBPRA1562 hypothetical protein; hypothetical protein 786194 4920976 Shew_0691 Shewanella loihica PV-4 hypothetical protein YP_001092822.1 785061 D 323850 CDS YP_001092823.1 127511626 4921271 786199..787119 1 NC_009092.1 KEGG: shm:Shewmr7_1015 hypothetical protein; hypothetical protein 787119 4921271 Shew_0692 Shewanella loihica PV-4 hypothetical protein YP_001092823.1 786199 D 323850 CDS YP_001092824.1 127511627 4921838 787227..787514 1 NC_009092.1 hypothetical protein 787514 4921838 Shew_0693 Shewanella loihica PV-4 hypothetical protein YP_001092824.1 787227 D 323850 CDS YP_001092825.1 127511628 4922524 complement(787511..788452) 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_2587 membrane protein; hypothetical protein 788452 4922524 Shew_0694 Shewanella loihica PV-4 hypothetical protein YP_001092825.1 787511 R 323850 CDS YP_001092826.1 127511629 4922546 complement(788634..788849) 1 NC_009092.1 PFAM: protein of unknown function DUF331; KEGG: shm:Shewmr7_0498 protein of unknown function DUF331; hypothetical protein 788849 4922546 Shew_0695 Shewanella loihica PV-4 hypothetical protein YP_001092826.1 788634 R 323850 CDS YP_001092827.1 127511630 4922547 complement(789076..789990) 1 NC_009092.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 789990 4922547 Shew_0696 Shewanella loihica PV-4 ribokinase YP_001092827.1 789076 R 323850 CDS YP_001092828.1 127511631 4923542 complement(790034..791041) 1 NC_009092.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 791041 rihA 4923542 rihA Shewanella loihica PV-4 ribonucleoside hydrolase 1 YP_001092828.1 790034 R 323850 CDS YP_001092829.1 127511632 4923609 791670..793052 1 NC_009092.1 PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1936 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 793052 4923609 Shew_0698 Shewanella loihica PV-4 Na+/H+ antiporter NhaC YP_001092829.1 791670 D 323850 CDS YP_001092830.1 127511633 4923880 complement(793188..794663) 1 NC_009092.1 KEGG: shm:Shewmr7_3245 Na+/H+ antiporter; Na+/H+ antiporter 794663 4923880 Shew_0699 Shewanella loihica PV-4 Na+/H+ antiporter YP_001092830.1 793188 R 323850 CDS YP_001092831.1 127511634 4920775 complement(794970..795830) 1 NC_009092.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: shm:Shewmr7_3276 pirin domain protein domain protein; pirin domain-containing protein 795830 4920775 Shew_0700 Shewanella loihica PV-4 pirin domain-containing protein YP_001092831.1 794970 R 323850 CDS YP_001092832.1 127511635 4921623 796188..796769 1 NC_009092.1 KEGG: hch:HCH_04210 hypothetical protein; hypothetical protein 796769 4921623 Shew_0701 Shewanella loihica PV-4 hypothetical protein YP_001092832.1 796188 D 323850 CDS YP_001092833.1 127511636 4921832 796784..797866 1 NC_009092.1 PFAM: Rhomboid family protein; KEGG: jan:Jann_3255 rhomboid-like protein; rhomboid family protein 797866 4921832 Shew_0702 Shewanella loihica PV-4 rhomboid family protein YP_001092833.1 796784 D 323850 CDS YP_001092834.1 127511637 4922449 798050..798412 1 NC_009092.1 PFAM: response regulator receiver; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver protein 798412 4922449 Shew_0703 Shewanella loihica PV-4 response regulator receiver protein YP_001092834.1 798050 D 323850 CDS YP_001092835.1 127511638 4922450 798599..799195 1 NC_009092.1 hypothetical protein 799195 4922450 Shew_0704 Shewanella loihica PV-4 hypothetical protein YP_001092835.1 798599 D 323850 CDS YP_001092836.1 127511639 4923061 799500..800441 1 NC_009092.1 hypothetical protein 800441 4923061 Shew_0705 Shewanella loihica PV-4 hypothetical protein YP_001092836.1 799500 D 323850 CDS YP_001092837.1 127511640 4923441 complement(800542..801219) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO0510 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 801219 4923441 Shew_0706 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001092837.1 800542 R 323850 CDS YP_001092838.1 127511641 4923541 complement(801362..801841) 1 NC_009092.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vpa:VPA0766 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 801841 4923541 Shew_0707 Shewanella loihica PV-4 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001092838.1 801362 R 323850 CDS YP_001092839.1 127511642 4923811 complement(801959..802786) 1 NC_009092.1 KEGG: shm:Shewmr7_2638 hypothetical protein; hypothetical protein 802786 4923811 Shew_0708 Shewanella loihica PV-4 hypothetical protein YP_001092839.1 801959 R 323850 CDS YP_001092840.1 127511643 4922433 803961..806231 1 NC_009092.1 KEGG: sfr:Sfri_3122 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 806231 4922433 Shew_0709 Shewanella loihica PV-4 catalase/peroxidase HPI YP_001092840.1 803961 D 323850 CDS YP_001092841.1 127511644 4921261 complement(807370..811092) 1 NC_009092.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 811092 metH 4921261 metH Shewanella loihica PV-4 B12-dependent methionine synthase YP_001092841.1 807370 R 323850 CDS YP_001092842.1 127511645 4922447 811422..812033 1 NC_009092.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; phosphoglycerate mutase 812033 4922447 Shew_0711 Shewanella loihica PV-4 phosphoglycerate mutase YP_001092842.1 811422 D 323850 CDS YP_001092843.1 127511646 4922448 812368..813342 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_0840 ABC transporter-related protein; ABC transporter-like protein 813342 4922448 Shew_0712 Shewanella loihica PV-4 ABC transporter-like protein YP_001092843.1 812368 D 323850 CDS YP_001092844.1 127511647 4922605 813329..814372 1 NC_009092.1 PFAM: transport system permease protein; KEGG: she:Shewmr4_0841 transport system permease protein; transport system permease 814372 4922605 Shew_0713 Shewanella loihica PV-4 transport system permease YP_001092844.1 813329 D 323850 CDS YP_001092845.1 127511648 4922612 814495..815523 1 NC_009092.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 815523 cobT 4922612 cobT Shewanella loihica PV-4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001092845.1 814495 D 323850 CDS YP_001092846.1 127511649 4922800 815565..816332 1 NC_009092.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sfr:Sfri_0877 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 816332 4922800 Shew_0715 Shewanella loihica PV-4 cobalamin 5'-phosphate synthase YP_001092846.1 815565 D 323850 CDS YP_001092847.1 127511650 4923188 816329..816877 1 NC_009092.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobalbumin biosynthesis protein 816877 4923188 Shew_0716 Shewanella loihica PV-4 cobalbumin biosynthesis protein YP_001092847.1 816329 D 323850 CDS YP_001092848.1 127511651 4922515 816890..818494 1 NC_009092.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 818494 4922515 Shew_0717 Shewanella loihica PV-4 cobyric acid synthase YP_001092848.1 816890 D 323850 CDS YP_001092849.1 127511652 4921693 818509..819138 1 NC_009092.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 819138 4921693 Shew_0718 Shewanella loihica PV-4 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001092849.1 818509 D 323850 CDS YP_001092850.1 127511653 4921966 819519..820343 1 NC_009092.1 PFAM: periplasmic binding protein; KEGG: she:Shewmr4_0848 periplasmic binding protein; periplasmic binding protein 820343 4921966 Shew_0719 Shewanella loihica PV-4 periplasmic binding protein YP_001092850.1 819519 D 323850 CDS YP_001092851.1 127511654 4921967 820401..820787 1 NC_009092.1 KEGG: son:SO3708 hypothetical protein; hypothetical protein 820787 4921967 Shew_0720 Shewanella loihica PV-4 hypothetical protein YP_001092851.1 820401 D 323850 CDS YP_001092852.1 127511655 4921131 821137..822399 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sfr:Sfri_0897 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 822399 4921131 Shew_0721 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001092852.1 821137 D 323850 CDS YP_001092853.1 127511656 4921208 822411..822647 1 NC_009092.1 hypothetical protein 822647 4921208 Shew_0722 Shewanella loihica PV-4 hypothetical protein YP_001092853.1 822411 D 323850 CDS YP_001092854.1 127511657 4920666 822712..823434 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3159 ABC transporter-related protein; ABC transporter-like protein 823434 4920666 Shew_0723 Shewanella loihica PV-4 ABC transporter-like protein YP_001092854.1 822712 D 323850 CDS YP_001092855.1 127511658 4923215 823446..824756 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: sfr:Sfri_0899 protein of unknown function DUF214; hypothetical protein 824756 4923215 Shew_0724 Shewanella loihica PV-4 hypothetical protein YP_001092855.1 823446 D 323850 CDS YP_001092856.1 127511659 4922780 824767..825963 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2848 protein of unknown function DUF214; hypothetical protein 825963 4922780 Shew_0725 Shewanella loihica PV-4 hypothetical protein YP_001092856.1 824767 D 323850 CDS YP_001092857.1 127511660 4921575 826091..827575 1 NC_009092.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: shm:Shewmr7_3156 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 827575 4921575 Shew_0726 Shewanella loihica PV-4 two component, sigma54 specific, Fis family transcriptional regulator YP_001092857.1 826091 D 323850 CDS YP_001092858.1 127511661 4923290 827575..828948 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3155 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 828948 4923290 Shew_0727 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001092858.1 827575 D 323850 CDS YP_001092859.1 127511662 4923291 complement(829023..830051) 1 NC_009092.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 830051 4923291 Shew_0728 Shewanella loihica PV-4 dihydroorotase YP_001092859.1 829023 R 323850 CDS YP_001092860.1 127511663 4920569 830300..832000 1 NC_009092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ppr:PBPRA1421 putative NADH oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 832000 4920569 Shew_0729 Shewanella loihica PV-4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001092860.1 830300 D 323850 CDS YP_001092861.1 127511664 4923135 832089..832517 1 NC_009092.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ppr:PBPRA1422 conserved hypothetical protein; hypothetical protein 832517 4923135 Shew_0730 Shewanella loihica PV-4 hypothetical protein YP_001092861.1 832089 D 323850 CDS YP_001092862.1 127511665 4924376 832526..832996 1 NC_009092.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pat:Patl_2106 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 832996 4924376 Shew_0731 Shewanella loihica PV-4 hypothetical protein YP_001092862.1 832526 D 323850 CDS YP_001092863.1 127511666 4922977 833279..834619 1 NC_009092.1 KEGG: pfo:Pfl_3508 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 834619 4922977 Shew_0732 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase YP_001092863.1 833279 D 323850 CDS YP_001092864.1 127511667 4920586 complement(834650..835405) 1 NC_009092.1 KEGG: shm:Shewmr7_3361 hypothetical protein; hypothetical protein 835405 4920586 Shew_0733 Shewanella loihica PV-4 hypothetical protein YP_001092864.1 834650 R 323850 CDS YP_001092865.1 127511668 4923782 complement(835643..836095) 1 NC_009092.1 PFAM: Fe-S metabolism associated SufE; KEGG: sfr:Sfri_3182 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 836095 4923782 Shew_0734 Shewanella loihica PV-4 Fe-S metabolism associated SufE YP_001092865.1 835643 R 323850 CDS YP_001092866.1 127511669 4921530 complement(836116..837327) 1 NC_009092.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase 837327 4921530 Shew_0735 Shewanella loihica PV-4 SufS subfamily cysteine desulfurase YP_001092866.1 836116 R 323850 CDS YP_001092867.1 127511670 4921531 complement(837432..838472) 1 NC_009092.1 PFAM: aldo/keto reductase; KEGG: shm:Shewmr7_3273 aldo/keto reductase; aldo/keto reductase 838472 4921531 Shew_0736 Shewanella loihica PV-4 aldo/keto reductase YP_001092867.1 837432 R 323850 CDS YP_001092868.1 127511671 4920626 complement(838596..839564) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: shm:Shewmr7_3265 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator 839564 4920626 Shew_0737 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001092868.1 838596 R 323850 CDS YP_001092869.1 127511672 4924284 complement(839701..840318) 1 NC_009092.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 840318 4924284 Shew_0738 Shewanella loihica PV-4 NTPase YP_001092869.1 839701 R 323850 CDS YP_001092870.1 127511673 4924066 840729..842000 1 NC_009092.1 PFAM: aromatic amino acid permease; KEGG: shm:Shewmr7_3262 amino acid transporter, transmembrane; aromatic amino acid permease 842000 4924066 Shew_0739 Shewanella loihica PV-4 aromatic amino acid permease YP_001092870.1 840729 D 323850 CDS YP_001092871.1 127511674 4924000 842057..843424 1 NC_009092.1 KEGG: ecp:ECP_1757 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 843424 4924000 Shew_0740 Shewanella loihica PV-4 L-serine dehydratase 1 YP_001092871.1 842057 D 323850 CDS YP_001092872.1 127511675 4924046 complement(843511..843954) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0762 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 843954 4924046 Shew_0741 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001092872.1 843511 R 323850 CDS YP_001092873.1 127511676 4920594 844096..844401 1 NC_009092.1 KEGG: son:SO0921 hypothetical protein; hypothetical protein 844401 4920594 Shew_0742 Shewanella loihica PV-4 hypothetical protein YP_001092873.1 844096 D 323850 CDS YP_001092874.1 127511677 4920572 844566..845867 1 NC_009092.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3259 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 845867 4920572 Shew_0743 Shewanella loihica PV-4 sodium:dicarboxylate symporter YP_001092874.1 844566 D 323850 CDS YP_001092875.1 127511678 4920573 complement(845971..846384) 1 NC_009092.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: shm:Shewmr7_3258 protein of unknown function DUF306, MetA and HslJ; hypothetical protein 846384 4920573 Shew_0744 Shewanella loihica PV-4 hypothetical protein YP_001092875.1 845971 R 323850 CDS YP_001092876.1 127511679 4920588 846568..846807 1 NC_009092.1 KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein 846807 4920588 Shew_0745 Shewanella loihica PV-4 hypothetical protein YP_001092876.1 846568 D 323850 CDS YP_001092877.1 127511680 4920624 complement(846833..847777) 1 NC_009092.1 PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_3256 GGDEF domain protein; diguanylate cyclase 847777 4920624 Shew_0746 Shewanella loihica PV-4 diguanylate cyclase YP_001092877.1 846833 R 323850 CDS YP_001092878.1 127511681 4920629 complement(847984..848940) 1 NC_009092.1 KEGG: shm:Shewmr7_3256 GGDEF domain protein; diguanylate cyclase 848940 4920629 Shew_0747 Shewanella loihica PV-4 diguanylate cyclase YP_001092878.1 847984 R 323850 CDS YP_001092879.1 127511682 4920672 849062..849622 1 NC_009092.1 KEGG: son:SO0926 acetyltransferase, GNAT family; acetyltransferase 849622 4920672 Shew_0748 Shewanella loihica PV-4 acetyltransferase YP_001092879.1 849062 D 323850 CDS YP_001092880.1 127511683 4920693 849694..850038 1 NC_009092.1 KEGG: sfr:Sfri_0644 hypothetical protein; hypothetical protein 850038 4920693 Shew_0749 Shewanella loihica PV-4 hypothetical protein YP_001092880.1 849694 D 323850 CDS YP_001092881.1 127511684 4920706 850101..850538 1 NC_009092.1 KEGG: sfr:Sfri_3020 hypothetical protein; hypothetical protein 850538 4920706 Shew_0750 Shewanella loihica PV-4 hypothetical protein YP_001092881.1 850101 D 323850 CDS YP_001092882.1 127511685 4920824 complement(850608..851759) 1 NC_009092.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 851759 4920824 Shew_0751 Shewanella loihica PV-4 S-adenosylmethionine synthetase YP_001092882.1 850608 R 323850 CDS YP_001092883.1 127511686 4920825 852283..854277 1 NC_009092.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 854277 4920825 Shew_0752 Shewanella loihica PV-4 transketolase YP_001092883.1 852283 D 323850 CDS YP_001092884.1 127511687 4923604 854411..855427 1 NC_009092.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 855427 4923604 Shew_0753 Shewanella loihica PV-4 erythrose 4-phosphate dehydrogenase YP_001092884.1 854411 D 323850 CDS YP_001092885.1 127511688 4923398 855530..856705 1 NC_009092.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 856705 pgk 4923398 pgk Shewanella loihica PV-4 phosphoglycerate kinase YP_001092885.1 855530 D 323850 CDS YP_001092886.1 127511689 4922155 856859..857923 1 NC_009092.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 857923 4922155 Shew_0755 Shewanella loihica PV-4 fructose-1,6-bisphosphate aldolase YP_001092886.1 856859 D 323850 CDS YP_001092887.1 127511690 4924136 858135..858875 1 NC_009092.1 PFAM: protein of unknown function DUF481; KEGG: shm:Shewmr7_3246 protein of unknown function DUF481; hypothetical protein 858875 4924136 Shew_0756 Shewanella loihica PV-4 hypothetical protein YP_001092887.1 858135 D 323850 CDS YP_001092888.1 127511691 4923689 859122..859577 1 NC_009092.1 KEGG: she:Shewmr4_0779 response regulator receiver protein; putative transcriptional regulator CadC 859577 4923689 Shew_0757 Shewanella loihica PV-4 putative transcriptional regulator CadC YP_001092888.1 859122 D 323850 CDS YP_001092889.1 127511692 4923483 complement(859766..860287) 1 NC_009092.1 KEGG: shm:Shewmr7_3242 hypothetical protein; hypothetical protein 860287 4923483 Shew_0758 Shewanella loihica PV-4 hypothetical protein YP_001092889.1 859766 R 323850 CDS YP_001092890.1 127511693 4923403 complement(860299..861120) 1 NC_009092.1 KEGG: sfr:Sfri_3633 cytochrome c, putative; cytochrome c 861120 4923403 Shew_0759 Shewanella loihica PV-4 cytochrome c YP_001092890.1 860299 R 323850 CDS YP_001092891.1 127511694 4923404 861579..862400 1 NC_009092.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; response regulator receiver protein 862400 4923404 Shew_0760 Shewanella loihica PV-4 response regulator receiver protein YP_001092891.1 861579 D 323850 CDS YP_001092892.1 127511695 4923085 862393..862914 1 NC_009092.1 KEGG: shm:Shewmr7_3239 hypothetical protein; hypothetical protein 862914 4923085 Shew_0761 Shewanella loihica PV-4 hypothetical protein YP_001092892.1 862393 D 323850 CDS YP_001092893.1 127511696 4922500 862984..864405 1 NC_009092.1 KEGG: son:SO0942 hypothetical protein; hypothetical protein 864405 4922500 Shew_0762 Shewanella loihica PV-4 hypothetical protein YP_001092893.1 862984 D 323850 CDS YP_001092894.1 127511697 4922434 complement(867403..869619) 1 NC_009092.1 PFAM: PAS fold domain protein; SMART: PAS domain containing protein; KEGG: shm:Shewmr7_3237 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein 869619 4922434 Shew_0763 Shewanella loihica PV-4 putative PAS/PAC sensor protein YP_001092894.1 867403 R 323850 CDS YP_001092895.1 127511698 4922095 complement(869806..870408) 1 NC_009092.1 PFAM: Radical SAM domain protein; KEGG: shm:Shewmr7_3236 radical SAM domain protein; radical SAM domain-containing protein 870408 4922095 Shew_0764 Shewanella loihica PV-4 radical SAM domain-containing protein YP_001092895.1 869806 R 323850 CDS YP_001092896.1 127511699 4921801 complement(870547..873696) 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3235 acriflavin resistance protein; acriflavin resistance protein 873696 4921801 Shew_0765 Shewanella loihica PV-4 acriflavin resistance protein YP_001092896.1 870547 R 323850 CDS YP_001092897.1 127511700 4921493 complement(873696..874919) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_0789 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 874919 4921493 Shew_0766 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001092897.1 873696 R 323850 CDS YP_001092898.1 127511701 4921264 complement(875149..876408) 1 NC_009092.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 876408 4921264 Shew_0767 Shewanella loihica PV-4 ATP-dependent RNA helicase SrmB YP_001092898.1 875149 R 323850 CDS YP_001092899.1 127511702 4921265 complement(876459..877190) 1 NC_009092.1 PFAM: methyltransferase small; KEGG: she:Shewmr4_0793 methyltransferase small; methyltransferase small 877190 4921265 Shew_0768 Shewanella loihica PV-4 methyltransferase small YP_001092899.1 876459 R 323850 CDS YP_001092900.1 127511703 4920878 877699..879030 1 NC_009092.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: sfr:Sfri_0662 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 879030 4920878 Shew_0769 Shewanella loihica PV-4 branched-chain amino acid transport system II carrier protein YP_001092900.1 877699 D 323850 CDS YP_001092901.1 127511704 4920855 879109..880020 1 NC_009092.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: she:Shewmr4_0795 tyrosine recombinase XerD; tyrosine recombinase XerD 880020 4920855 Shew_0770 Shewanella loihica PV-4 tyrosine recombinase XerD YP_001092901.1 879109 D 323850 CDS YP_001092902.1 127511705 4920806 880241..880966 1 NC_009092.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 880966 4920806 Shew_0771 Shewanella loihica PV-4 thiol:disulfide interchange protein DsbC YP_001092902.1 880241 D 323850 CDS YP_001092903.1 127511706 4920676 881086..882810 1 NC_009092.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: shm:Shewmr7_3226 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 882810 4920676 Shew_0772 Shewanella loihica PV-4 single-stranded-DNA-specific exonuclease RecJ YP_001092903.1 881086 D 323850 CDS YP_001092904.1 127511707 4920597 complement(882949..883938) 1 NC_009092.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 883938 4920597 Shew_0773 Shewanella loihica PV-4 fructose-1,6-bisphosphatase YP_001092904.1 882949 R 323850 CDS YP_001092905.1 127511708 4920817 884145..886397 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3372 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 886397 4920817 Shew_0774 Shewanella loihica PV-4 peptidase S9B dipeptidylpeptidase IV subunit YP_001092905.1 884145 D 323850 CDS YP_001092906.1 127511709 4920702 complement(886542..887099) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: vpa:VPA1299 putative transcriptional regulator; TetR family transcriptional regulator 887099 4920702 Shew_0775 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001092906.1 886542 R 323850 CDS YP_001092907.1 127511710 4920703 887199..887735 1 NC_009092.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: vpa:VPA1300 hypothetical protein; deaminase-reductase domain-containing protein 887735 4920703 Shew_0776 Shewanella loihica PV-4 deaminase-reductase domain-containing protein YP_001092907.1 887199 D 323850 CDS YP_001092908.1 127511711 4920765 complement(888003..888722) 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3371 two component transcriptional regulator, winged helix family; two-component response regulator 888722 4920765 Shew_0777 Shewanella loihica PV-4 two-component response regulator YP_001092908.1 888003 R 323850 CDS YP_001092909.1 127511712 4920863 889300..889731 1 NC_009092.1 KEGG: shm:Shewmr7_3370 hypothetical protein; hypothetical protein 889731 4920863 Shew_0778 Shewanella loihica PV-4 hypothetical protein YP_001092909.1 889300 D 323850 CDS YP_001092910.1 127511713 4922352 890141..891499 1 NC_009092.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 891499 4922352 Shew_0779 Shewanella loihica PV-4 aspartate kinase III YP_001092910.1 890141 D 323850 CDS YP_001092911.1 127511714 4923658 891496..892602 1 NC_009092.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: shm:Shewmr7_3368 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 892602 4923658 Shew_0780 Shewanella loihica PV-4 succinylglutamate desuccinylase/aspartoacylase YP_001092911.1 891496 D 323850 CDS YP_001092912.1 127511715 4922353 complement(892722..896573) 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sfr:Sfri_0513 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 896573 4922353 Shew_0781 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001092912.1 892722 R 323850 CDS YP_001092913.1 127511716 4923975 complement(896794..897255) 1 NC_009092.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 897255 4923975 Shew_0782 Shewanella loihica PV-4 DNA-binding transcriptional regulator AsnC YP_001092913.1 896794 R 323850 CDS YP_001092914.1 127511717 4921979 complement(897390..898067) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: she:Shewmr4_3139 pseudouridylate synthase; pseudouridylate synthase 898067 4921979 Shew_0783 Shewanella loihica PV-4 pseudouridylate synthase YP_001092914.1 897390 R 323850 CDS YP_001092915.1 127511718 4921980 complement(898161..898448) 1 NC_009092.1 KEGG: shm:Shewmr7_3212 hypothetical protein; hypothetical protein 898448 4921980 Shew_0784 Shewanella loihica PV-4 hypothetical protein YP_001092915.1 898161 R 323850 CDS YP_001092916.1 127511719 4920867 complement(898474..899004) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0810 methyltransferase type 12; type 12 methyltransferase 899004 4920867 Shew_0785 Shewanella loihica PV-4 type 12 methyltransferase YP_001092916.1 898474 R 323850 CDS YP_001092917.1 127511720 4920707 complement(898979..899395) 1 NC_009092.1 KEGG: she:Shewmr4_0809 hypothetical protein; hypothetical protein 899395 4920707 Shew_0786 Shewanella loihica PV-4 hypothetical protein YP_001092917.1 898979 R 323850 CDS YP_001092918.1 127511721 4920669 899614..900603 1 NC_009092.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3216 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 900603 4920669 Shew_0787 Shewanella loihica PV-4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001092918.1 899614 D 323850 CDS YP_001092919.1 127511722 4921338 900718..901455 1 NC_009092.1 PFAM: dienelactone hydrolase; KEGG: she:Shewmr4_0806 dienelactone hydrolase; dienelactone hydrolase 901455 4921338 Shew_0788 Shewanella loihica PV-4 dienelactone hydrolase YP_001092919.1 900718 D 323850 CDS YP_001092920.1 127511723 4922377 complement(901545..902513) 1 NC_009092.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: sfr:Sfri_0943 Mg2 transporter protein, CorA family protein; Mg2+ transporter protein, CorA family protein 902513 4922377 Shew_0789 Shewanella loihica PV-4 Mg2+ transporter protein, CorA family protein YP_001092920.1 901545 R 323850 CDS YP_001092921.1 127511724 4920936 complement(902530..903081) 1 NC_009092.1 KEGG: shm:Shewmr7_3219 hypothetical protein; hypothetical protein 903081 4920936 Shew_0790 Shewanella loihica PV-4 hypothetical protein YP_001092921.1 902530 R 323850 CDS YP_001092922.1 127511725 4923958 903429..904172 1 NC_009092.1 PFAM: Spermine synthase; KEGG: shm:Shewmr7_3220 spermine synthase; spermine synthase 904172 4923958 Shew_0791 Shewanella loihica PV-4 spermine synthase YP_001092922.1 903429 D 323850 CDS YP_001092923.1 127511726 4923959 904370..904939 1 NC_009092.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3222 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 904939 4923959 Shew_0792 Shewanella loihica PV-4 alkyl hydroperoxide reductase YP_001092923.1 904370 D 323850 CDS YP_001092924.1 127511727 4923856 905116..906681 1 NC_009092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0800 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 906681 4923856 Shew_0793 Shewanella loihica PV-4 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001092924.1 905116 D 323850 CDS YP_001092925.1 127511728 4920708 906794..907978 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: spt:SPA1005 hypothetical protein; diguanylate cyclase 907978 4920708 Shew_0794 Shewanella loihica PV-4 diguanylate cyclase YP_001092925.1 906794 D 323850 CDS YP_001092926.1 127511729 4923971 complement(908006..908410) 1 NC_009092.1 KEGG: cps:CPS_4848 hypothetical protein; hypothetical protein 908410 4923971 Shew_0795 Shewanella loihica PV-4 hypothetical protein YP_001092926.1 908006 R 323850 CDS YP_001092927.1 127511730 4920853 complement(908713..908910) 1 NC_009092.1 KEGG: sdn:Sden_3162 hypothetical protein; hypothetical protein 908910 4920853 Shew_0796 Shewanella loihica PV-4 hypothetical protein YP_001092927.1 908713 R 323850 CDS YP_001092928.1 127511731 4921313 complement(909014..910432) 1 NC_009092.1 KEGG: shm:Shewmr7_3210 hypothetical protein; hypothetical protein 910432 4921313 Shew_0797 Shewanella loihica PV-4 hypothetical protein YP_001092928.1 909014 R 323850 CDS YP_001092929.1 127511732 4923650 complement(910987..911424) 1 NC_009092.1 hypothetical protein 911424 4923650 Shew_0798 Shewanella loihica PV-4 hypothetical protein YP_001092929.1 910987 R 323850 CDS YP_001092930.1 127511733 4921001 911729..912214 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: sfr:Sfri_0578 transcriptional regulator, MarR family protein; MarR family transcriptional regulator 912214 4921001 Shew_0799 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001092930.1 911729 D 323850 CDS YP_001092931.1 127511734 4921002 912248..913489 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_3207 FAD dependent oxidoreductase; FAD dependent oxidoreductase 913489 4921002 Shew_0800 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001092931.1 912248 D 323850 CDS YP_001092932.1 127511735 4920809 913532..914671 1 NC_009092.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 914671 rumB 4920809 rumB Shewanella loihica PV-4 23S rRNA methyluridine methyltransferase YP_001092932.1 913532 D 323850 CDS YP_001092933.1 127511736 4920668 914820..916028 1 NC_009092.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sfr:Sfri_0580 chromate transporter, chromate ion transporter (CHR) family protein; chromate transporter 916028 4920668 Shew_0802 Shewanella loihica PV-4 chromate transporter YP_001092933.1 914820 D 323850 CDS YP_001092934.1 127511737 4924151 complement(916063..917301) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_0818 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 917301 4924151 Shew_0803 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001092934.1 916063 R 323850 CDS YP_001092935.1 127511738 4924028 complement(917298..918002) 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3204 two component transcriptional regulator, winged helix family; two component transcriptional regulator 918002 4924028 Shew_0804 Shewanella loihica PV-4 two component transcriptional regulator YP_001092935.1 917298 R 323850 CDS YP_001092936.1 127511739 4920776 complement(917999..918394) 1 NC_009092.1 KEGG: she:Shewmr4_0820 hypothetical protein; hypothetical protein 918394 4920776 Shew_0805 Shewanella loihica PV-4 hypothetical protein YP_001092936.1 917999 R 323850 CDS YP_001092937.1 127511740 4920670 complement(918384..919229) 1 NC_009092.1 PFAM: MltA-interacting MipA family protein; KEGG: shm:Shewmr7_3202 MltA-interacting MipA family protein; MltA-interacting MipA family protein 919229 4920670 Shew_0806 Shewanella loihica PV-4 MltA-interacting MipA family protein YP_001092937.1 918384 R 323850 CDS YP_001092938.1 127511741 4924277 919978..925095 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: shm:Shewmr7_3201 LPXTG-motif cell wall anchor domain; peptidase S8/S53 subtilisin kexin sedolisin 925095 4924277 Shew_0807 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001092938.1 919978 D 323850 CDS YP_001092939.1 127511742 4924278 925401..927065 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_0630 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 927065 4924278 Shew_0808 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001092939.1 925401 D 323850 CDS YP_001092940.1 127511743 4923578 complement(927171..931403) 1 NC_009092.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_0825 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 931403 4923578 Shew_0809 Shewanella loihica PV-4 formate dehydrogenase subunit alpha YP_001092940.1 927171 R 323850 CDS YP_001092941.1 127511744 4920598 complement(931669..932649) 1 NC_009092.1 PFAM: pentapeptide repeat protein; Ion transport 2 domain protein,; KEGG: vvy:VV0782 putative potassium channel protein; ion transport 2 domain-containing protein 932649 4920598 Shew_0810 Shewanella loihica PV-4 ion transport 2 domain-containing protein YP_001092941.1 931669 R 323850 CDS YP_001092942.1 127511745 4920647 933056..933937 1 NC_009092.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: shm:Shewmr7_3197 peptide chain release factor 2; peptide chain release factor 2 933937 4920647 Shew_0811 Shewanella loihica PV-4 peptide chain release factor 2 YP_001092942.1 933056 D 323850 CDS YP_001092943.1 127511746 4920766 933950..935452 1 NC_009092.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 935452 lysS 4920766 lysS Shewanella loihica PV-4 lysyl-tRNA synthetase YP_001092943.1 933950 D 323850 CDS YP_001092944.1 127511747 4923726 935718..938231 1 NC_009092.1 KEGG: shm:Shewmr7_1231 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 938231 4923726 Shew_0813 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001092944.1 935718 D 323850 CDS YP_001092945.1 127511748 4921317 complement(938276..938824) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: cps:CPS_1154 RNA pseudouridine synthase family protein; pseudouridine synthase 938824 4921317 Shew_0814 Shewanella loihica PV-4 pseudouridine synthase YP_001092945.1 938276 R 323850 CDS YP_001092946.1 127511749 4923653 939182..939988 1 NC_009092.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: hch:HCH_06984 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 939988 4923653 Shew_0815 Shewanella loihica PV-4 glucosamine-6-phosphate isomerase YP_001092946.1 939182 D 323850 CDS YP_001092947.1 127511750 4923654 940252..940788 1 NC_009092.1 KEGG: sdn:Sden_0648 hypothetical protein; hypothetical protein 940788 4923654 Shew_0816 Shewanella loihica PV-4 hypothetical protein YP_001092947.1 940252 D 323850 CDS YP_001092948.1 127511751 4922778 940800..941117 1 NC_009092.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: mbu:Mbur_1476 cupin family protein; cupin 941117 4922778 Shew_0817 Shewanella loihica PV-4 cupin YP_001092948.1 940800 D 323850 CDS YP_001092949.1 127511752 4921928 941285..943198 1 NC_009092.1 PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32; peptidase U32 943198 4921928 Shew_0818 Shewanella loihica PV-4 peptidase U32 YP_001092949.1 941285 D 323850 CDS YP_001092950.1 127511753 4921414 943239..943613 1 NC_009092.1 PFAM: protein of unknown function DUF1696; KEGG: shm:Shewmr7_0829 protein of unknown function DUF1696; hypothetical protein 943613 4921414 Shew_0819 Shewanella loihica PV-4 hypothetical protein YP_001092950.1 943239 D 323850 CDS YP_001092951.1 127511754 4920692 complement(943663..944850) 1 NC_009092.1 KEGG: she:Shewmr4_3134 hypothetical protein; hypothetical protein 944850 4920692 Shew_0820 Shewanella loihica PV-4 hypothetical protein YP_001092951.1 943663 R 323850 CDS YP_001092952.1 127511755 4920663 complement(945007..945294) 1 NC_009092.1 KEGG: xac:XAC3907 mitomycin resistance protein; mitomycin resistance protein 945294 4920663 Shew_0821 Shewanella loihica PV-4 mitomycin resistance protein YP_001092952.1 945007 R 323850 CDS YP_001092953.1 127511756 4923424 complement(945361..945954) 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bte:BTH_II0577 hypothetical protein; lysine exporter protein LysE/YggA 945954 4923424 Shew_0822 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001092953.1 945361 R 323850 CDS YP_001092954.1 127511757 4921435 complement(946201..947106) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_0776 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 947106 4921435 Shew_0823 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092954.1 946201 R 323850 CDS YP_001092955.1 127511758 4921436 947238..947879 1 NC_009092.1 KEGG: shm:Shewmr7_0612 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 947879 4921436 Shew_0824 Shewanella loihica PV-4 NAD-dependent epimerase/dehydratase YP_001092955.1 947238 D 323850 CDS YP_001092956.1 127511759 4920574 complement(948036..948695) 1 NC_009092.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 948695 4920574 Shew_0825 Shewanella loihica PV-4 ribose-5-phosphate isomerase A YP_001092956.1 948036 R 323850 CDS YP_001092957.1 127511760 4920678 949026..949949 1 NC_009092.1 PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein; hypothetical protein 949949 4920678 Shew_0826 Shewanella loihica PV-4 hypothetical protein YP_001092957.1 949026 D 323850 CDS YP_001092958.1 127511761 4920580 950060..950707 1 NC_009092.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 950707 4920580 Shew_0827 Shewanella loihica PV-4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001092958.1 950060 D 323850 CDS YP_001092959.1 127511762 4920577 complement(950712..951605) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 951605 4920577 Shew_0828 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001092959.1 950712 R 323850 CDS YP_001092960.1 127511763 4920595 951706..952125 1 NC_009092.1 PFAM: LrgA family protein; KEGG: she:Shewmr4_3050 LrgA family protein; LrgA family protein 952125 4920595 Shew_0829 Shewanella loihica PV-4 LrgA family protein YP_001092960.1 951706 D 323850 CDS YP_001092961.1 127511764 4920609 952139..952828 1 NC_009092.1 PFAM: LrgB family protein; KEGG: she:Shewmr4_3049 LrgB family protein; LrgB family protein 952828 4920609 Shew_0830 Shewanella loihica PV-4 LrgB family protein YP_001092961.1 952139 D 323850 CDS YP_001092962.1 127511765 4920632 complement(952869..953288) 1 NC_009092.1 PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_0640 CBS domain containing membrane protein; hypothetical protein 953288 4920632 Shew_0831 Shewanella loihica PV-4 hypothetical protein YP_001092962.1 952869 R 323850 CDS YP_001092963.1 127511766 4920633 953647..955419 1 NC_009092.1 PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0641 twin-arginine translocation pathway signal; alkaline phosphatase 955419 4920633 Shew_0832 Shewanella loihica PV-4 alkaline phosphatase YP_001092963.1 953647 D 323850 CDS YP_001092964.1 127511767 4920767 955682..956248 1 NC_009092.1 KEGG: shm:Shewmr7_0642 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 956248 4920767 Shew_0833 Shewanella loihica PV-4 hypoxanthine-guanine phosphoribosyltransferase YP_001092964.1 955682 D 323850 CDS YP_001092965.1 127511768 4920940 complement(956331..956543) 1 NC_009092.1 hypothetical protein 956543 4920940 Shew_0834 Shewanella loihica PV-4 hypothetical protein YP_001092965.1 956331 R 323850 CDS YP_001092966.1 127511769 4920851 complement(956689..959337) 1 NC_009092.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_3040 aminopeptidase N; peptidase M1, membrane alanine aminopeptidase 959337 4920851 Shew_0835 Shewanella loihica PV-4 peptidase M1, membrane alanine aminopeptidase YP_001092966.1 956689 R 323850 CDS YP_001092967.1 127511770 4921316 complement(959579..960172) 1 NC_009092.1 TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: shm:Shewmr7_0935 hypothetical protein; membrane lipoprotein lipid attachment site 960172 4921316 Shew_0836 Shewanella loihica PV-4 membrane lipoprotein lipid attachment site YP_001092967.1 959579 R 323850 CDS YP_001092968.1 127511771 4921128 complement(960198..961607) 1 NC_009092.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1061 TPR domain protein; hypothetical protein 961607 4921128 Shew_0837 Shewanella loihica PV-4 hypothetical protein YP_001092968.1 960198 R 323850 CDS YP_001092969.1 127511772 4922818 complement(961672..961884) 1 NC_009092.1 PFAM: SlyX family protein; KEGG: sdn:Sden_2911 SlyX; SlyX family protein 961884 4922818 Shew_0838 Shewanella loihica PV-4 SlyX family protein YP_001092969.1 961672 R 323850 CDS YP_001092970.1 127511773 4922633 complement(961898..962866) 1 NC_009092.1 PFAM: WD-40 repeat protein; KEGG: shm:Shewmr7_0939 WD-40 repeat protein; WD-40 repeat-containing protein 962866 4922633 Shew_0839 Shewanella loihica PV-4 WD-40 repeat-containing protein YP_001092970.1 961898 R 323850 CDS YP_001092971.1 127511774 4922634 963046..963813 1 NC_009092.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_0940 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 963813 4922634 Shew_0840 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001092971.1 963046 D 323850 CDS YP_001092972.1 127511775 4922855 964006..964380 1 NC_009092.1 PFAM: uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein 964380 4922855 Shew_0841 Shewanella loihica PV-4 hypothetical protein YP_001092972.1 964006 D 323850 CDS YP_001092973.1 127511776 4922465 complement(964472..965101) 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: shm:Shewmr7_3365 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 965101 4922465 Shew_0842 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001092973.1 964472 R 323850 CDS YP_001092974.1 127511777 4923372 complement(965163..966866) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_3364 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ 966866 4923372 Shew_0843 Shewanella loihica PV-4 nitrate/nitrite sensor protein NarQ YP_001092974.1 965163 R 323850 CDS YP_001092975.1 127511778 4923147 967114..968514 1 NC_009092.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 968514 nrfA 4923147 nrfA Shewanella loihica PV-4 cytochrome c552 YP_001092975.1 967114 D 323850 CDS YP_001092976.1 127511779 4923687 complement(968589..969131) 1 NC_009092.1 PFAM: isochorismatase hydrolase; KEGG: she:Shewmr4_3363 isochorismatase hydrolase; isochorismatase hydrolase 969131 4923687 Shew_0845 Shewanella loihica PV-4 isochorismatase hydrolase YP_001092976.1 968589 R 323850 CDS YP_001092977.1 127511780 4923843 969384..969722 1 NC_009092.1 PFAM: nitrogen regulatory protein P-II; KEGG: sfr:Sfri_0623 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 969722 4923843 Shew_0846 Shewanella loihica PV-4 nitrogen regulatory protein P-II YP_001092977.1 969384 D 323850 CDS YP_001092978.1 127511781 4923656 969735..970985 1 NC_009092.1 PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0592 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 970985 4923656 Shew_0847 Shewanella loihica PV-4 Rh family protein/ammonium transporter YP_001092978.1 969735 D 323850 CDS YP_001092979.1 127511782 4923657 971105..971431 1 NC_009092.1 KEGG: shm:Shewmr7_0593 hypothetical protein; hypothetical protein 971431 4923657 Shew_0848 Shewanella loihica PV-4 hypothetical protein YP_001092979.1 971105 D 323850 CDS YP_001092980.1 127511783 4921830 971524..972705 1 NC_009092.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0594 tetratricopeptide TPR_2 repeat protein; hypothetical protein 972705 4921830 Shew_0849 Shewanella loihica PV-4 hypothetical protein YP_001092980.1 971524 D 323850 CDS YP_001092981.1 127511784 4922596 complement(972890..973717) 1 NC_009092.1 KEGG: sfr:Sfri_0627 ABC-type amino acid transport/signal transduction systems; hypothetical protein 973717 4922596 Shew_0850 Shewanella loihica PV-4 hypothetical protein YP_001092981.1 972890 R 323850 CDS YP_001092982.1 127511785 4923231 974065..975117 1 NC_009092.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 975117 4923231 Shew_0851 Shewanella loihica PV-4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001092982.1 974065 D 323850 CDS YP_001092983.1 127511786 4923673 complement(975242..975418) 1 NC_009092.1 KEGG: shm:Shewmr7_0596 hypothetical protein; hypothetical protein 975418 4923673 Shew_0852 Shewanella loihica PV-4 hypothetical protein YP_001092983.1 975242 R 323850 CDS YP_001092984.1 127511787 4923445 975818..977593 1 NC_009092.1 PFAM: ABC transporter, transmembrane region; ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0597 ABC transporter-related protein; ABC transporter-like protein 977593 4923445 Shew_0853 Shewanella loihica PV-4 ABC transporter-like protein YP_001092984.1 975818 D 323850 CDS YP_001092985.1 127511788 4922367 977669..977926 1 NC_009092.1 KEGG: shm:Shewmr7_0598 hypothetical protein; hypothetical protein 977926 4922367 Shew_0854 Shewanella loihica PV-4 hypothetical protein YP_001092985.1 977669 D 323850 CDS YP_001092986.1 127511789 4920777 complement(977957..978166) 1 NC_009092.1 KEGG: son:SO0752 hypothetical protein; hypothetical protein 978166 4920777 Shew_0855 Shewanella loihica PV-4 hypothetical protein YP_001092986.1 977957 R 323850 CDS YP_001092987.1 127511790 4920778 complement(978280..978816) 1 NC_009092.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase 978816 4920778 Shew_0856 Shewanella loihica PV-4 phosphoglycerate mutase YP_001092987.1 978280 R 323850 CDS YP_001092988.1 127511791 4923684 978951..979550 1 NC_009092.1 KEGG: son:SO0748 hypothetical protein; hypothetical protein 979550 4923684 Shew_0857 Shewanella loihica PV-4 hypothetical protein YP_001092988.1 978951 D 323850 CDS YP_001092989.1 127511792 4920833 979680..980420 1 NC_009092.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit 980420 4920833 Shew_0858 Shewanella loihica PV-4 oxidoreductase FAD/NAD(P)-binding subunit YP_001092989.1 979680 D 323850 CDS YP_001092990.1 127511793 4923750 980431..981030 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: son:SO0746 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 981030 4923750 Shew_0859 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001092990.1 980431 D 323850 CDS YP_001092991.1 127511794 4920839 complement(981109..981579) 1 NC_009092.1 KEGG: son:SO0745 hypothetical protein; hypothetical protein 981579 4920839 Shew_0860 Shewanella loihica PV-4 hypothetical protein YP_001092991.1 981109 R 323850 CDS YP_001092992.1 127511795 4920743 981749..982756 1 NC_009092.1 PFAM: extracellular solute-binding protein, family 1; KEGG: shm:Shewmr7_0606 extracellular solute-binding protein, family 1; extracellular solute-binding protein 982756 4920743 Shew_0861 Shewanella loihica PV-4 extracellular solute-binding protein YP_001092992.1 981749 D 323850 CDS YP_001092993.1 127511796 4920705 982914..984545 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 984545 4920705 Shew_0862 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001092993.1 982914 D 323850 CDS YP_001092994.1 127511797 4920652 984547..985575 1 NC_009092.1 PFAM: ABC transporter-related protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sfr:Sfri_0638 ABC transporter-related protein; ABC transporter-like protein 985575 4920652 Shew_0863 Shewanella loihica PV-4 ABC transporter-like protein YP_001092994.1 984547 D 323850 CDS YP_001092995.1 127511798 4920653 985762..986706 1 NC_009092.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein 986706 4920653 Shew_0864 Shewanella loihica PV-4 Dyp-type peroxidase family protein YP_001092995.1 985762 D 323850 CDS YP_001092996.1 127511799 4920664 complement(986821..987279) 1 NC_009092.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: gvi:glr3306 hypothetical protein; cupin 987279 4920664 Shew_0865 Shewanella loihica PV-4 cupin YP_001092996.1 986821 R 323850 CDS YP_001092997.1 127511800 4920636 complement(987477..987947) 1 NC_009092.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 987947 4920636 Shew_0866 Shewanella loihica PV-4 arginine repressor YP_001092997.1 987477 R 323850 CDS YP_001092998.1 127511801 4920635 988255..989190 1 NC_009092.1 oxidizes malate to oxaloacetate; malate dehydrogenase 989190 4920635 Shew_0867 Shewanella loihica PV-4 malate dehydrogenase YP_001092998.1 988255 D 323850 CDS YP_001092999.1 127511802 4920587 complement(989310..990281) 1 NC_009092.1 PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase 990281 4920587 Shew_0868 Shewanella loihica PV-4 trans-hexaprenyltranstransferase YP_001092999.1 989310 R 323850 CDS YP_001093000.1 127511803 4920562 990557..990868 1 NC_009092.1 PFAM: ribosomal protein L21; KEGG: sfr:Sfri_3089 ribosomal protein L21; 50S ribosomal protein L21 990868 rplU 4920562 rplU Shewanella loihica PV-4 50S ribosomal protein L21 YP_001093000.1 990557 D 323850 CDS YP_001093001.1 127511804 4924227 990884..991138 1 NC_009092.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 991138 rpmA 4924227 rpmA Shewanella loihica PV-4 50S ribosomal protein L27 YP_001093001.1 990884 D 323850 CDS YP_001093002.1 127511805 4924228 991355..992518 1 NC_009092.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 992518 obgE 4924228 obgE Shewanella loihica PV-4 GTPase ObgE YP_001093002.1 991355 D 323850 CDS YP_001093003.1 127511806 4924229 992554..993315 1 NC_009092.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein; hypothetical protein 993315 4924229 Shew_0872 Shewanella loihica PV-4 hypothetical protein YP_001093003.1 992554 D 323850 CDS YP_001093004.1 127511807 4923693 993312..993782 1 NC_009092.1 KEGG: son:SO3647 hypothetical protein; hypothetical protein 993782 4923693 Shew_0873 Shewanella loihica PV-4 hypothetical protein YP_001093004.1 993312 D 323850 CDS YP_001093005.1 127511808 4924279 993823..994305 1 NC_009092.1 PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase 994305 4924279 Shew_0874 Shewanella loihica PV-4 dihydrofolate reductase YP_001093005.1 993823 D 323850 CDS YP_001093006.1 127511809 4924140 994392..994784 1 NC_009092.1 KEGG: sdn:Sden_2921 hypothetical protein; hypothetical protein 994784 4924140 Shew_0875 Shewanella loihica PV-4 hypothetical protein YP_001093006.1 994392 D 323850 CDS YP_001093007.1 127511810 4923610 complement(994888..996912) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 996912 4923610 Shew_0876 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001093007.1 994888 R 323850 CDS YP_001093008.1 127511811 4924286 complement(997017..997841) 1 NC_009092.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 997841 apaH 4924286 apaH Shewanella loihica PV-4 diadenosine tetraphosphatase YP_001093008.1 997017 R 323850 CDS YP_001093009.1 127511812 4923997 complement(997868..998248) 1 NC_009092.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 998248 apaG 4923997 apaG Shewanella loihica PV-4 ApaG protein YP_001093009.1 997868 R 323850 CDS YP_001093010.1 127511813 4920810 complement(998300..999109) 1 NC_009092.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 999109 ksgA 4920810 ksgA Shewanella loihica PV-4 dimethyladenosine transferase YP_001093010.1 998300 R 323850 CDS YP_001093011.1 127511814 4920811 complement(999112..1000110) 1 NC_009092.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1000110 pdxA 4920811 pdxA Shewanella loihica PV-4 4-hydroxythreonine-4-phosphate dehydrogenase YP_001093011.1 999112 R 323850 CDS YP_001093012.1 127511815 4920578 complement(1000116..1001420) 1 NC_009092.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1001420 4920578 Shew_0881 Shewanella loihica PV-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001093012.1 1000116 R 323850 CDS YP_001093013.1 127511816 4922678 complement(1001547..1003868) 1 NC_009092.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: shm:Shewmr7_3112 organic solvent tolerance protein; organic solvent tolerance protein 1003868 4922678 Shew_0882 Shewanella loihica PV-4 organic solvent tolerance protein YP_001093013.1 1001547 R 323850 CDS YP_001093014.1 127511817 4920873 1004025..1005062 1 NC_009092.1 PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_3111 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1005062 4920873 Shew_0883 Shewanella loihica PV-4 aminoglycoside phosphotransferase YP_001093014.1 1004025 D 323850 CDS YP_001093015.1 127511818 4920611 1005062..1005811 1 NC_009092.1 PFAM: Nucleotidyl transferase; KEGG: shm:Shewmr7_3110 nucleotidyl transferase; nucleotidyl transferase 1005811 4920611 Shew_0884 Shewanella loihica PV-4 nucleotidyl transferase YP_001093015.1 1005062 D 323850 CDS YP_001093016.1 127511819 4922123 1005808..1006584 1 NC_009092.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1006584 djlA 4922123 djlA Shewanella loihica PV-4 Dna-J like membrane chaperone protein YP_001093016.1 1005808 D 323850 CDS YP_001093017.1 127511820 4923086 1006607..1007236 1 NC_009092.1 KEGG: she:Shewmr4_0912 hypothetical protein; hypothetical protein 1007236 4923086 Shew_0886 Shewanella loihica PV-4 hypothetical protein YP_001093017.1 1006607 D 323850 CDS YP_001093018.1 127511821 4920700 1007257..1008210 1 NC_009092.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3107 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 1008210 4920700 Shew_0887 Shewanella loihica PV-4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001093018.1 1007257 D 323850 CDS YP_001093019.1 127511822 4923260 1009773..1010162 1 NC_009092.1 KEGG: shm:Shewmr7_3097 hypothetical protein; hypothetical protein 1010162 4923260 Shew_0889 Shewanella loihica PV-4 hypothetical protein YP_001093019.1 1009773 D 323850 CDS YP_001093020.1 127511823 4920744 1010164..1011300 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3016 secretion protein HlyD family protein; secretion protein HlyD family protein 1011300 4920744 Shew_0890 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001093020.1 1010164 D 323850 CDS YP_001093021.1 127511824 4921624 complement(1011415..1012728) 1 NC_009092.1 KEGG: vch:VC1406 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1012728 4921624 Shew_0891 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001093021.1 1011415 R 323850 CDS YP_001093022.1 127511825 4923275 1013039..1014508 1 NC_009092.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3100 AAA ATPase, central domain protein; ATPase central domain-containing protein 1014508 4923275 Shew_0892 Shewanella loihica PV-4 ATPase central domain-containing protein YP_001093022.1 1013039 D 323850 CDS YP_001093023.1 127511826 4920698 complement(1014521..1015060) 1 NC_009092.1 KEGG: she:Shewmr4_3009 hypothetical protein; hypothetical protein 1015060 4920698 Shew_0893 Shewanella loihica PV-4 hypothetical protein YP_001093023.1 1014521 R 323850 CDS YP_001093024.1 127511827 4920615 1015252..1015524 1 NC_009092.1 PFAM: protein of unknown function DUF1289; KEGG: she:Shewmr4_3008 protein of unknown function DUF1289; hypothetical protein 1015524 4920615 Shew_0894 Shewanella loihica PV-4 hypothetical protein YP_001093024.1 1015252 D 323850 CDS YP_001093025.1 127511828 4923826 complement(1015603..1016886) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1016886 4923826 Shew_0895 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001093025.1 1015603 R 323850 CDS YP_001093026.1 127511829 4923877 complement(1016897..1017610) 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3087 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1017610 4923877 Shew_0896 Shewanella loihica PV-4 two component transcriptional regulator YP_001093026.1 1016897 R 323850 CDS YP_001093027.1 127511830 4923878 complement(1017610..1018011) 1 NC_009092.1 KEGG: son:SO3593 hypothetical protein; hypothetical protein 1018011 4923878 Shew_0897 Shewanella loihica PV-4 hypothetical protein YP_001093027.1 1017610 R 323850 CDS YP_001093028.1 127511831 4923832 complement(1018026..1018961) 1 NC_009092.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 1018961 4923832 Shew_0898 Shewanella loihica PV-4 MltA-interacting MipA family protein YP_001093028.1 1018026 R 323850 CDS YP_001093029.1 127511832 4920875 complement(1019081..1019917) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_3019 regulatory protein, LysR; LysR family transcriptional regulator 1019917 4920875 Shew_0899 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093029.1 1019081 R 323850 CDS YP_001093030.1 127511833 4920585 1020106..1021281 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sdn:Sden_3018 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein 1021281 4920585 Shew_0900 Shewanella loihica PV-4 acyl-CoA dehydrogenase domain-containing protein YP_001093030.1 1020106 D 323850 CDS YP_001093031.1 127511834 4923391 1021390..1023681 1 NC_009092.1 PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: sdn:Sden_3017 transketolase, central region; transketolase, central region 1023681 4923391 Shew_0901 Shewanella loihica PV-4 transketolase, central region YP_001093031.1 1021390 D 323850 CDS YP_001093032.1 127511835 4920641 1023678..1024772 1 NC_009092.1 KEGG: sdn:Sden_3016 (acyl-carrier-protein) S-malonyltransferase; (acyl-carrier-protein) S-malonyltransferase 1024772 4920641 Shew_0902 Shewanella loihica PV-4 (acyl-carrier-protein) S-malonyltransferase YP_001093032.1 1023678 D 323850 CDS YP_001093033.1 127511836 4921427 1024955..1025476 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0529 hypothetical acetyltransferase; N-acetyltransferase GCN5 1025476 4921427 Shew_0903 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093033.1 1024955 D 323850 CDS YP_001093034.1 127511837 4920827 1026007..1026573 1 NC_009092.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: ppr:PBPRA2415 putative membrane protein; GPR1/FUN34/yaaH family protein 1026573 4920827 Shew_0904 Shewanella loihica PV-4 GPR1/FUN34/yaaH family protein YP_001093034.1 1026007 D 323850 CDS YP_001093035.1 127511838 4920828 complement(1026570..1027754) 1 NC_009092.1 PFAM: response regulator receiver; KEGG: cps:CPS_4695 response regulator; response regulator receiver protein 1027754 4920828 Shew_0905 Shewanella loihica PV-4 response regulator receiver protein YP_001093035.1 1026570 R 323850 CDS YP_001093036.1 127511839 4923659 complement(1027751..1028089) 1 NC_009092.1 PFAM: Hpt domain protein; KEGG: nmu:Nmul_A1556 multi-sensor hybrid histidine kinase; Hpt protein 1028089 4923659 Shew_0906 Shewanella loihica PV-4 Hpt protein YP_001093036.1 1027751 R 323850 CDS YP_001093037.1 127511840 4920774 complement(1028079..1030838) 1 NC_009092.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator; PAS/PAC sensor hybrid histidine kinase 1030838 4920774 Shew_0907 Shewanella loihica PV-4 PAS/PAC sensor hybrid histidine kinase YP_001093037.1 1028079 R 323850 CDS YP_001093038.1 127511841 4921840 complement(1031000..1031674) 1 NC_009092.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sfr:Sfri_1135 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1031674 4921840 Shew_0908 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001093038.1 1031000 R 323850 CDS YP_001093039.1 127511842 4920789 complement(1031823..1032329) 1 NC_009092.1 KEGG: shm:Shewmr7_3082 hypothetical protein; hypothetical protein 1032329 4920789 Shew_0909 Shewanella loihica PV-4 hypothetical protein YP_001093039.1 1031823 R 323850 CDS YP_001093040.1 127511843 4924104 1032482..1032799 1 NC_009092.1 KEGG: sdy:SDY_1697 hypothetical protein; hypothetical protein 1032799 4924104 Shew_0910 Shewanella loihica PV-4 hypothetical protein YP_001093040.1 1032482 D 323850 CDS YP_001093041.1 127511844 4920786 1033033..1033335 1 NC_009092.1 hypothetical protein 1033335 4920786 Shew_0911 Shewanella loihica PV-4 hypothetical protein YP_001093041.1 1033033 D 323850 CDS YP_001093042.1 127511845 4920902 1033341..1033589 1 NC_009092.1 hypothetical protein 1033589 4920902 Shew_0912 Shewanella loihica PV-4 hypothetical protein YP_001093042.1 1033341 D 323850 CDS YP_001093043.1 127511846 4920903 complement(1033654..1034076) 1 NC_009092.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_3081 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1034076 4920903 Shew_0913 Shewanella loihica PV-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001093043.1 1033654 R 323850 CDS YP_001093044.1 127511847 4923748 complement(1034216..1034821) 1 NC_009092.1 PFAM: NADPH-dependent FMN reductase; KEGG: son:SO3585 azoreductase, putative; NADPH-dependent FMN reductase 1034821 4923748 Shew_0914 Shewanella loihica PV-4 NADPH-dependent FMN reductase YP_001093044.1 1034216 R 323850 CDS YP_001093045.1 127511848 4920832 1034962..1035618 1 NC_009092.1 KEGG: she:Shewmr4_2998 putative transcriptional regulator; putative transcriptional regulator 1035618 4920832 Shew_0915 Shewanella loihica PV-4 putative transcriptional regulator YP_001093045.1 1034962 D 323850 CDS YP_001093046.1 127511849 4923006 1035608..1036318 1 NC_009092.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_2876 pseudouridine synthase, Rsu; pseudouridine synthase 1036318 4923006 Shew_0916 Shewanella loihica PV-4 pseudouridine synthase YP_001093046.1 1035608 D 323850 CDS YP_001093047.1 127511850 4924275 1036479..1037444 1 NC_009092.1 PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 1037444 4924275 Shew_0917 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093047.1 1036479 D 323850 CDS YP_001093048.1 127511851 4923962 1037603..1039897 1 NC_009092.1 KEGG: sfr:Sfri_0913 decaheme cytochrome c; decaheme cytochrome c 1039897 4923962 Shew_0918 Shewanella loihica PV-4 decaheme cytochrome c YP_001093048.1 1037603 D 323850 CDS YP_001093049.1 127511852 4923668 1040176..1042299 1 NC_009092.1 PFAM: EAL domain protein; phosphotransferase system, EIIC; KEGG: shm:Shewmr7_3254 diguanylate phosphodiesterase; diguanylate phosphodiesterase 1042299 4923668 Shew_0919 Shewanella loihica PV-4 diguanylate phosphodiesterase YP_001093049.1 1040176 D 323850 CDS YP_001093050.1 127511853 4922044 complement(1042420..1043958) 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_2826 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1043958 4922044 Shew_0920 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001093050.1 1042420 R 323850 CDS YP_001093051.1 127511854 4922045 complement(1044259..1047228) 1 NC_009092.1 KEGG: hch:HCH_03041 hypothetical protein; hypothetical protein 1047228 4922045 Shew_0921 Shewanella loihica PV-4 hypothetical protein YP_001093051.1 1044259 R 323850 CDS YP_001093052.1 127511855 4923214 1047740..1049458 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1643 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1049458 4923214 Shew_0922 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001093052.1 1047740 D 323850 CDS YP_001093053.1 127511856 4922037 complement(1049573..1052452) 1 NC_009092.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1052452 valS 4922037 valS Shewanella loihica PV-4 valyl-tRNA synthetase YP_001093053.1 1049573 R 323850 CDS YP_001093054.1 127511857 4921268 complement(1052477..1052938) 1 NC_009092.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: shm:Shewmr7_1202 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC 1052938 4921268 Shew_0924 Shewanella loihica PV-4 DNA polymerase III chi subunit, HolC YP_001093054.1 1052477 R 323850 CDS YP_001093055.1 127511858 4923545 complement(1053619..1055085) 1 NC_009092.1 KEGG: msu:MS0989 hypothetical protein; hypothetical protein 1055085 4923545 Shew_0925 Shewanella loihica PV-4 hypothetical protein YP_001093055.1 1053619 R 323850 CDS YP_001093056.1 127511859 4920622 complement(1055175..1055828) 1 NC_009092.1 KEGG: hso:HS_1731 Haemophilus-specific protein, uncharacterized; hypothetical protein 1055828 4920622 Shew_0926 Shewanella loihica PV-4 hypothetical protein YP_001093056.1 1055175 R 323850 CDS YP_001093057.1 127511860 4920856 1057371..1059119 1 NC_009092.1 PFAM: Amidohydrolase 3; KEGG: mmc:Mmcs_3318 twin-arginine translocation pathway signal; amidohydrolase 3 1059119 4920856 Shew_0927 Shewanella loihica PV-4 amidohydrolase 3 YP_001093057.1 1057371 D 323850 CDS YP_001093058.1 127511861 4921243 1059390..1060403 1 NC_009092.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1060403 4921243 Shew_0928 Shewanella loihica PV-4 transposase IS116/IS110/IS902 family protein YP_001093058.1 1059390 D 323850 CDS YP_001093059.1 127511862 4921244 complement(1061034..1064111) 1 NC_009092.1 PFAM: Ig family protein; KEGG: shm:Shewmr7_0560 putative outer membrane adhesin like protein; Ig family protein 1064111 4921244 Shew_0929 Shewanella loihica PV-4 Ig family protein YP_001093059.1 1061034 R 323850 CDS YP_001093060.1 127511863 4922359 complement(1064505..1065080) 1 NC_009092.1 PFAM: AMMECR1 domain protein; KEGG: mag:amb3706 predicted dioxygenase; AMMECR1 domain-containing protein 1065080 4922359 Shew_0930 Shewanella loihica PV-4 AMMECR1 domain-containing protein YP_001093060.1 1064505 R 323850 CDS YP_001093061.1 127511864 4920566 complement(1065058..1065858) 1 NC_009092.1 PFAM: protein of unknown function DUF52; KEGG: hch:HCH_05946 predicted dioxygenase; hypothetical protein 1065858 4920566 Shew_0931 Shewanella loihica PV-4 hypothetical protein YP_001093061.1 1065058 R 323850 CDS YP_001093062.1 127511865 4920638 1065921..1067009 1 NC_009092.1 PFAM: Radical SAM domain protein; KEGG: hch:HCH_05222 pyruvate-formate lyase-activating enzyme; radical SAM domain-containing protein 1067009 4920638 Shew_0932 Shewanella loihica PV-4 radical SAM domain-containing protein YP_001093062.1 1065921 D 323850 CDS YP_001093063.1 127511866 4923373 complement(1067049..1067720) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dps:DP0496 hypothetical protein; type 11 methyltransferase 1067720 4923373 Shew_0933 Shewanella loihica PV-4 type 11 methyltransferase YP_001093063.1 1067049 R 323850 CDS YP_001093064.1 127511867 4920859 complement(1067836..1068750) 1 NC_009092.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRA2309 hypothetical protein; hypothetical protein 1068750 4920859 Shew_0934 Shewanella loihica PV-4 hypothetical protein YP_001093064.1 1067836 R 323850 CDS YP_001093065.1 127511868 4920570 complement(1069130..1072729) 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: shm:Shewmr7_0825 protease-associated PA domain protein; peptidase S8/S53 subtilisin kexin sedolisin 1072729 4920570 Shew_0935 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001093065.1 1069130 R 323850 CDS YP_001093066.1 127511869 4920607 complement(1072806..1076561) 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO3800 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 1076561 4920607 Shew_0936 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001093066.1 1072806 R 323850 CDS YP_001093067.1 127511870 4920608 complement(1076743..1078833) 1 NC_009092.1 PFAM: transcriptional regulator domain protein; KEGG: she:Shewmr4_2883 transcriptional regulator domain protein; transcriptional regulator CadC 1078833 4920608 Shew_0937 Shewanella loihica PV-4 transcriptional regulator CadC YP_001093067.1 1076743 R 323850 CDS YP_001093068.1 127511871 4920677 1079082..1079471 1 NC_009092.1 KEGG: sde:Sde_1353 TonB-dependent receptor; TonB-dependent receptor 1079471 4920677 Shew_0938 Shewanella loihica PV-4 TonB-dependent receptor YP_001093068.1 1079082 D 323850 CDS YP_001093069.1 127511872 4924103 complement(1079608..1081116) 1 NC_009092.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1081116 4924103 Shew_0939 Shewanella loihica PV-4 leucyl aminopeptidase YP_001093069.1 1079608 R 323850 CDS YP_001093070.1 127511873 4924272 1081337..1082449 1 NC_009092.1 PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2826 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1082449 4924272 Shew_0940 Shewanella loihica PV-4 YjgP/YjgQ family permease YP_001093070.1 1081337 D 323850 CDS YP_001093071.1 127511874 4924110 1082446..1083504 1 NC_009092.1 PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2825 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1083504 4924110 Shew_0941 Shewanella loihica PV-4 YjgP/YjgQ family permease YP_001093071.1 1082446 D 323850 CDS YP_001093072.1 127511875 4920593 complement(1083576..1084085) 1 NC_009092.1 PFAM: RDD domain containing protein; KEGG: she:Shewmr4_2823 RDD domain containing protein; RDD domain-containing protein 1084085 4920593 Shew_0942 Shewanella loihica PV-4 RDD domain-containing protein YP_001093072.1 1083576 R 323850 CDS YP_001093073.1 127511876 4923471 complement(1084147..1084407) 1 NC_009092.1 KEGG: she:Shewmr4_2822 hypothetical protein; hypothetical protein 1084407 4923471 Shew_0943 Shewanella loihica PV-4 hypothetical protein YP_001093073.1 1084147 R 323850 CDS YP_001093074.1 127511877 4923585 complement(1084464..1084976) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2903 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1084976 4923585 Shew_0944 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093074.1 1084464 R 323850 CDS YP_001093075.1 127511878 4923586 1085349..1085984 1 NC_009092.1 PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449; hypothetical protein 1085984 4923586 Shew_0945 Shewanella loihica PV-4 hypothetical protein YP_001093075.1 1085349 D 323850 CDS YP_001093076.1 127511879 4923557 1086039..1087826 1 NC_009092.1 PFAM: band 7 protein; KEGG: shm:Shewmr7_2899 band 7 protein; hypothetical protein 1087826 4923557 Shew_0946 Shewanella loihica PV-4 hypothetical protein YP_001093076.1 1086039 D 323850 CDS YP_001093077.1 127511880 4924106 complement(1087950..1089449) 1 NC_009092.1 PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: shm:Shewmr7_2902 carboxypeptidase Taq; carboxypeptidase Taq 1089449 4924106 Shew_0947 Shewanella loihica PV-4 carboxypeptidase Taq YP_001093077.1 1087950 R 323850 CDS YP_001093078.1 127511881 4920886 complement(1089588..1090220) 1 NC_009092.1 KEGG: son:SO1380 hypothetical protein; hypothetical protein 1090220 4920886 Shew_0948 Shewanella loihica PV-4 hypothetical protein YP_001093078.1 1089588 R 323850 CDS YP_001093079.1 127511882 4920901 complement(1090458..1091126) 1 NC_009092.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfr:Sfri_3069 redoxin domain protein; redoxin domain-containing protein 1091126 4920901 Shew_0949 Shewanella loihica PV-4 redoxin domain-containing protein YP_001093079.1 1090458 R 323850 CDS YP_001093080.1 127511883 4921463 complement(1091279..1092577) 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1092577 4921463 Shew_0950 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001093080.1 1091279 R 323850 CDS YP_001093081.1 127511884 4921310 1092897..1094096 1 NC_009092.1 PFAM: EAL domain protein; response regulator receiver; KEGG: pha:PSHAa0134 hypothetical protein; response regulator receiver modulated diguanylate phosphodiesterase 1094096 4921310 Shew_0951 Shewanella loihica PV-4 response regulator receiver modulated diguanylate phosphodiesterase YP_001093081.1 1092897 D 323850 CDS YP_001093082.1 127511885 4922026 complement(1094196..1095983) 1 NC_009092.1 PFAM: peptidase M24; KEGG: she:Shewmr4_2807 peptidase M24; peptidase M24 1095983 4922026 Shew_0952 Shewanella loihica PV-4 peptidase M24 YP_001093082.1 1094196 R 323850 CDS YP_001093083.1 127511886 4922027 1096450..1097688 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3481 conserved hypothetical drug transport transmembrane protein; major facilitator superfamily transporter 1097688 4922027 Shew_0953 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001093083.1 1096450 D 323850 CDS YP_001093084.1 127511887 4922126 1097847..1098626 1 NC_009092.1 PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein 1098626 4922126 Shew_0954 Shewanella loihica PV-4 ROK family protein YP_001093084.1 1097847 D 323850 CDS YP_001093085.1 127511888 4922366 1098944..1100182 1 NC_009092.1 PFAM: peptidase M24; KEGG: sfr:Sfri_3046 peptidase M24; peptidase M24 1100182 4922366 Shew_0955 Shewanella loihica PV-4 peptidase M24 YP_001093085.1 1098944 D 323850 CDS YP_001093086.1 127511889 4923063 complement(1100395..1100868) 1 NC_009092.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1100868 4923063 Shew_0956 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001093086.1 1100395 R 323850 CDS YP_001093087.1 127511890 4923269 complement(1100955..1101491) 1 NC_009092.1 PFAM: protein of unknown function DUF1294; KEGG: shm:Shewmr7_2883 protein of unknown function DUF1294; hypothetical protein 1101491 4923269 Shew_0957 Shewanella loihica PV-4 hypothetical protein YP_001093087.1 1100955 R 323850 CDS YP_001093088.1 127511891 4923390 complement(1101533..1102990) 1 NC_009092.1 KEGG: sfr:Sfri_0740 hypothetical protein; hypothetical protein 1102990 4923390 Shew_0958 Shewanella loihica PV-4 hypothetical protein YP_001093088.1 1101533 R 323850 CDS YP_001093089.1 127511892 4923711 complement(1103138..1103614) 1 NC_009092.1 KEGG: sdn:Sden_2841 hypothetical protein; hypothetical protein 1103614 4923711 Shew_0959 Shewanella loihica PV-4 hypothetical protein YP_001093089.1 1103138 R 323850 CDS YP_001093090.1 127511893 4923293 1103827..1104777 1 NC_009092.1 PFAM: protein of unknown function DUF368; KEGG: sdn:Sden_2840 protein of unknown function DUF368; hypothetical protein 1104777 4923293 Shew_0960 Shewanella loihica PV-4 hypothetical protein YP_001093090.1 1103827 D 323850 CDS YP_001093091.1 127511894 4923294 complement(1105045..1105389) 1 NC_009092.1 KEGG: shm:Shewmr7_1246 hypothetical protein; hypothetical protein 1105389 4923294 Shew_0961 Shewanella loihica PV-4 hypothetical protein YP_001093091.1 1105045 R 323850 CDS YP_001093092.1 127511895 4920689 1105515..1105685 1 NC_009092.1 KEGG: shm:Shewmr7_1247 hypothetical protein; hypothetical protein 1105685 4920689 Shew_0962 Shewanella loihica PV-4 hypothetical protein YP_001093092.1 1105515 D 323850 CDS YP_001093093.1 127511896 4920814 complement(1105803..1106522) 1 NC_009092.1 KEGG: she:Shewmr4_2930 hypothetical protein; hypothetical protein 1106522 4920814 Shew_0963 Shewanella loihica PV-4 hypothetical protein YP_001093093.1 1105803 R 323850 CDS YP_001093094.1 127511897 4921152 complement(1106633..1106998) 1 NC_009092.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: shm:Shewmr7_3011 protein of unknown function DUF861, cupin_3; hypothetical protein 1106998 4921152 Shew_0964 Shewanella loihica PV-4 hypothetical protein YP_001093094.1 1106633 R 323850 CDS YP_001093095.1 127511898 4921439 complement(1107054..1108544) 1 NC_009092.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1108544 4921439 Shew_0965 Shewanella loihica PV-4 methylmalonate-semialdehyde dehydrogenase YP_001093095.1 1107054 R 323850 CDS YP_001093096.1 127511899 4921462 complement(1108595..1109935) 1 NC_009092.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 1109935 4921462 Shew_0966 Shewanella loihica PV-4 beta alanine--pyruvate transaminase YP_001093096.1 1108595 R 323850 CDS YP_001093097.1 127511900 4921642 1110182..1111678 1 NC_009092.1 PFAM: aldehyde dehydrogenase; KEGG: sfr:Sfri_3021 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 1111678 4921642 Shew_0967 Shewanella loihica PV-4 aldehyde dehydrogenase YP_001093097.1 1110182 D 323850 CDS YP_001093098.1 127511901 4922046 1111913..1112767 1 NC_009092.1 PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_3006 3-mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 1112767 4922046 Shew_0968 Shewanella loihica PV-4 3-mercaptopyruvate sulfurtransferase YP_001093098.1 1111913 D 323850 CDS YP_001093099.1 127511902 4922047 complement(1112831..1114135) 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_2922 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1114135 4922047 Shew_0969 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001093099.1 1112831 R 323850 CDS YP_001093100.1 127511903 4922413 1114319..1114867 1 NC_009092.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_3003 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator 1114867 4922413 Shew_0970 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001093100.1 1114319 D 323850 CDS YP_001093101.1 127511904 4922523 1115311..1116072 1 NC_009092.1 PFAM: peptidase C26; KEGG: sfr:Sfri_3012 peptidase C26; peptidase C26 1116072 4922523 Shew_0971 Shewanella loihica PV-4 peptidase C26 YP_001093101.1 1115311 D 323850 CDS YP_001093102.1 127511905 4923474 1116079..1117428 1 NC_009092.1 PFAM: glutamine synthetase, catalytic region; KEGG: shm:Shewmr7_3001 glutamate--ammonia ligase; glutamate--ammonia ligase 1117428 4923474 Shew_0972 Shewanella loihica PV-4 glutamate--ammonia ligase YP_001093102.1 1116079 D 323850 CDS YP_001093103.1 127511906 4923520 1117707..1118807 1 NC_009092.1 PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_2918 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1118807 4923520 Shew_0973 Shewanella loihica PV-4 extracellular solute-binding protein YP_001093103.1 1117707 D 323850 CDS YP_001093104.1 127511907 4924065 1118906..1120042 1 NC_009092.1 KEGG: shm:Shewmr7_2999 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-related protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1120042 4924065 Shew_0974 Shewanella loihica PV-4 spermidine/putrescine ABC transporter ATPase YP_001093104.1 1118906 D 323850 CDS YP_001093105.1 127511908 4921926 1120053..1120958 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2998 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1120958 4921926 Shew_0975 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001093105.1 1120053 D 323850 CDS YP_001093106.1 127511909 4920656 1120955..1121782 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2997 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1121782 4920656 Shew_0976 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001093106.1 1120955 D 323850 CDS YP_001093107.1 127511910 4920657 1121866..1123152 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2996 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1123152 4920657 Shew_0977 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001093107.1 1121866 D 323850 CDS YP_001093108.1 127511911 4921440 complement(1123249..1124187) 1 NC_009092.1 PFAM: band 7 protein; KEGG: ecp:ECP_2928 putative SPFH domain protein; hypothetical protein 1124187 4921440 Shew_0978 Shewanella loihica PV-4 hypothetical protein YP_001093108.1 1123249 R 323850 CDS YP_001093109.1 127511912 4922034 complement(1124320..1126770) 1 NC_009092.1 KEGG: sfr:Sfri_3384 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 1126770 4922034 Shew_0979 Shewanella loihica PV-4 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_001093109.1 1124320 R 323850 CDS YP_001093110.1 127511913 4922360 1127012..1130527 1 NC_009092.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pat:Patl_2104 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 1130527 4922360 Shew_0980 Shewanella loihica PV-4 multi-sensor hybrid histidine kinase YP_001093110.1 1127012 D 323850 CDS YP_001093111.1 127511914 4922958 1130561..1131028 1 NC_009092.1 PFAM: response regulator receiver; KEGG: sdn:Sden_1684 GGDEF domain; response regulator receiver protein 1131028 4922958 Shew_0981 Shewanella loihica PV-4 response regulator receiver protein YP_001093111.1 1130561 D 323850 CDS YP_001093112.1 127511915 4923552 1131481..1133007 1 NC_009092.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vpa:VP1365 hypothetical protein; hypothetical protein 1133007 4923552 Shew_0982 Shewanella loihica PV-4 hypothetical protein YP_001093112.1 1131481 D 323850 CDS YP_001093113.1 127511916 4924098 1133264..1134601 1 NC_009092.1 PFAM: amidohydrolase; KEGG: mba:Mbar_A1663 hypothetical protein; amidohydrolase 1134601 4924098 Shew_0983 Shewanella loihica PV-4 amidohydrolase YP_001093113.1 1133264 D 323850 CDS YP_001093114.1 127511917 4920812 1134636..1135988 1 NC_009092.1 PFAM: beta-lactamase; KEGG: cps:CPS_2086 putative beta-lactamase; beta-lactamase 1135988 4920812 Shew_0984 Shewanella loihica PV-4 beta-lactamase YP_001093114.1 1134636 D 323850 CDS YP_001093115.1 127511918 4920813 1136261..1138042 1 NC_009092.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: aci:ACIAD1881 putative phospholipase D protein; phospholipase D/transphosphatidylase 1138042 4920813 Shew_0985 Shewanella loihica PV-4 phospholipase D/transphosphatidylase YP_001093115.1 1136261 D 323850 CDS YP_001093116.1 127511919 4921910 1139244..1139588 1 NC_009092.1 KEGG: vpa:VP2266 hypothetical protein; hypothetical protein 1139588 4921910 Shew_0986 Shewanella loihica PV-4 hypothetical protein YP_001093116.1 1139244 D 323850 CDS YP_001093117.1 127511920 4921907 1140182..1141375 1 NC_009092.1 hypothetical protein 1141375 4921907 Shew_0987 Shewanella loihica PV-4 hypothetical protein YP_001093117.1 1140182 D 323850 CDS YP_001093118.1 127511921 4922548 complement(1141764..1144076) 1 NC_009092.1 KEGG: rme:Rmet_2827 putative TraY/DotA-like type IV secretion system protein; hypothetical protein 1144076 4922548 Shew_0988 Shewanella loihica PV-4 hypothetical protein YP_001093118.1 1141764 R 323850 CDS YP_001093119.1 127511922 4923532 1144881..1146173 1 NC_009092.1 PFAM: MobA/MobL protein; KEGG: atc:AGR_L_66 hypothetical protein; MobA/MobL protein 1146173 4923532 Shew_0989 Shewanella loihica PV-4 MobA/MobL protein YP_001093119.1 1144881 D 323850 CDS YP_001093120.1 127511923 4923854 1146194..1146673 1 NC_009092.1 hypothetical protein 1146673 4923854 Shew_0990 Shewanella loihica PV-4 hypothetical protein YP_001093120.1 1146194 D 323850 CDS YP_001093121.1 127511924 4921807 complement(1147126..1147743) 1 NC_009092.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: psb:Psyr_2668 helix-turn-helix, fis-type; resolvase domain-containing protein 1147743 4921807 Shew_0991 Shewanella loihica PV-4 resolvase domain-containing protein YP_001093121.1 1147126 R 323850 CDS YP_001093122.1 127511925 4922394 complement(1147752..1148849) 1 NC_009092.1 PFAM: BsuBIPstI restriction endonuclease domain protein; KEGG: ssn:SSO_1584 putative restriction endonuclease; BsuBIPstI restriction endonuclease domain-containing protein 1148849 4922394 Shew_0992 Shewanella loihica PV-4 BsuBIPstI restriction endonuclease domain-containing protein YP_001093122.1 1147752 R 323850 CDS YP_001093123.1 127511926 4922395 complement(1148846..1150633) 1 NC_009092.1 PFAM: Eco57I restriction endonuclease; KEGG: ssn:SSO_1583 putative methylase; Eco57I restriction endonuclease 1150633 4922395 Shew_0993 Shewanella loihica PV-4 Eco57I restriction endonuclease YP_001093123.1 1148846 R 323850 CDS YP_001093124.1 127511927 4922267 1150865..1151482 1 NC_009092.1 KEGG: ecs:pO157p27 KfrAs; KfrA protein 1151482 4922267 Shew_0994 Shewanella loihica PV-4 KfrA protein YP_001093124.1 1150865 D 323850 CDS YP_001093125.1 127511928 4922763 1151992..1152966 1 NC_009092.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_A3110 putative phage integrase; phage integrase family protein 1152966 4922763 Shew_0995 Shewanella loihica PV-4 phage integrase family protein YP_001093125.1 1151992 D 323850 CDS YP_001093126.1 127511929 4923261 complement(1153477..1155327) 1 NC_009092.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: she:Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD; RpoD family RNA polymerase sigma factor 1155327 4923261 Shew_0996 Shewanella loihica PV-4 RpoD family RNA polymerase sigma factor YP_001093126.1 1153477 R 323850 CDS YP_001093127.1 127511930 4920631 complement(1155444..1157249) 1 NC_009092.1 KEGG: shm:Shewmr7_2989 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 1157249 4920631 Shew_0997 Shewanella loihica PV-4 DNA primase YP_001093127.1 1155444 R 323850 CDS YP_001093128.1 127511931 4921665 complement(1157269..1157712) 1 NC_009092.1 PFAM: GatB/Yqey domain protein; KEGG: she:Shewmr4_2906 GatB/YqeY domain protein; GatB/Yqey domain-containing protein 1157712 4921665 Shew_0998 Shewanella loihica PV-4 GatB/Yqey domain-containing protein YP_001093128.1 1157269 R 323850 CDS YP_001093129.1 127511932 4924337 complement(1157719..1157934) 1 NC_009092.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1157934 rpsU 4924337 rpsU Shewanella loihica PV-4 30S ribosomal protein S21 YP_001093129.1 1157719 R 323850 CDS YP_001093130.1 127511933 4923172 1158281..1159294 1 NC_009092.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1159294 4923172 Shew_1000 Shewanella loihica PV-4 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001093130.1 1158281 D 323850 CDS YP_001093131.1 127511934 4923173 complement(1159459..1160070) 1 NC_009092.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1160070 4923173 Shew_1001 Shewanella loihica PV-4 putative glycerol-3-phosphate acyltransferase PlsY YP_001093131.1 1159459 R 323850 CDS YP_001093132.1 127511935 4920941 1160367..1160720 1 NC_009092.1 TIGRFAM: dihydroneopterin aldolase; KEGG: sdn:Sden_2828 dihydroneopterin aldolase; dihydroneopterin aldolase 1160720 4920941 Shew_1002 Shewanella loihica PV-4 dihydroneopterin aldolase YP_001093132.1 1160367 D 323850 CDS YP_001093133.1 127511936 4920575 1160725..1161216 1 NC_009092.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: she:Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1161216 4920575 Shew_1003 Shewanella loihica PV-4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001093133.1 1160725 D 323850 CDS YP_001093134.1 127511937 4920564 1161251..1162051 1 NC_009092.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1162051 4920564 Shew_1004 Shewanella loihica PV-4 undecaprenyl pyrophosphate phosphatase YP_001093134.1 1161251 D 323850 CDS YP_001093135.1 127511938 4920623 1162084..1162908 1 NC_009092.1 PFAM: Methyltransferase type 11; KEGG: she:Shewmr4_2899 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 1162908 4920623 Shew_1005 Shewanella loihica PV-4 rRNA (guanine-N(1)-)-methyltransferase YP_001093135.1 1162084 D 323850 CDS YP_001093136.1 127511939 4920785 1163002..1163943 1 NC_009092.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: vpa:VPA1470 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1163943 4920785 Shew_1006 Shewanella loihica PV-4 ErfK/YbiS/YcfS/YnhG family protein YP_001093136.1 1163002 D 323850 CDS YP_001093137.1 127511940 4920790 complement(1164241..1164507) 1 NC_009092.1 KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 1164507 4920790 Shew_1007 Shewanella loihica PV-4 major outer membrane lipoprotein YP_001093137.1 1164241 R 323850 CDS YP_001093138.1 127511941 4920857 complement(1164717..1165958) 1 NC_009092.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: shm:Shewmr7_2979 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1165958 4920857 Shew_1008 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001093138.1 1164717 R 323850 CDS YP_001093139.1 127511942 4920858 1166146..1167909 1 NC_009092.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2896 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 1167909 4920858 Shew_1009 Shewanella loihica PV-4 peptidoglycan binding domain-containing protein YP_001093139.1 1166146 D 323850 CDS YP_001093140.1 127511943 4920952 1167909..1169036 1 NC_009092.1 KEGG: she:Shewmr4_2895 general secretion pathway protein B; general secretion pathway protein B 1169036 4920952 Shew_1010 Shewanella loihica PV-4 general secretion pathway protein B YP_001093140.1 1167909 D 323850 CDS YP_001093141.1 127511944 4921389 complement(1169183..1170430) 1 NC_009092.1 PFAM: Citrate transporter; KEGG: shm:Shewmr7_2976 citrate transporter; citrate transporter 1170430 4921389 Shew_1011 Shewanella loihica PV-4 citrate transporter YP_001093141.1 1169183 R 323850 CDS YP_001093142.1 127511945 4921308 complement(1171055..1172341) 1 NC_009092.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1172341 4921308 Shew_1012 Shewanella loihica PV-4 glutamate-1-semialdehyde aminotransferase YP_001093142.1 1171055 R 323850 CDS YP_001093143.1 127511946 4921834 complement(1172369..1173388) 1 NC_009092.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 1173388 4921834 Shew_1013 Shewanella loihica PV-4 aspartate carbamoyltransferase YP_001093143.1 1172369 R 323850 CDS YP_001093144.1 127511947 4922597 1173869..1174375 1 NC_009092.1 PFAM: helix-turn-helix domain protein; KEGG: cvi:CV0910 hypothetical protein; XRE family transcriptional regulator 1174375 4922597 Shew_1014 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001093144.1 1173869 D 323850 CDS YP_001093145.1 127511948 4922466 complement(1174427..1176136) 1 NC_009092.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: shm:Shewmr7_2973 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein 1176136 4922466 Shew_1015 Shewanella loihica PV-4 Cl- channel voltage-gated family protein YP_001093145.1 1174427 R 323850 CDS YP_001093146.1 127511949 4923103 1176212..1177129 1 NC_009092.1 KEGG: shm:Shewmr7_2972 hypothetical protein; hypothetical protein 1177129 4923103 Shew_1016 Shewanella loihica PV-4 hypothetical protein YP_001093146.1 1176212 D 323850 CDS YP_001093147.1 127511950 4923104 1177122..1177472 1 NC_009092.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1177472 4923104 Shew_1017 Shewanella loihica PV-4 iron-sulfur cluster insertion protein ErpA YP_001093147.1 1177122 D 323850 CDS YP_001093148.1 127511951 4923025 complement(1177601..1178074) 1 NC_009092.1 KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein 1178074 4923025 Shew_1018 Shewanella loihica PV-4 hypothetical protein YP_001093148.1 1177601 R 323850 CDS YP_001093149.1 127511952 4923523 complement(1178135..1178521) 1 NC_009092.1 KEGG: shm:Shewmr7_2969 hypothetical protein; hypothetical protein 1178521 4923523 Shew_1019 Shewanella loihica PV-4 hypothetical protein YP_001093149.1 1178135 R 323850 CDS YP_001093150.1 127511953 4923588 complement(1178664..1179773) 1 NC_009092.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1179773 anmK 4923588 anmK Shewanella loihica PV-4 anhydro-N-acetylmuramic acid kinase YP_001093150.1 1178664 R 323850 CDS YP_001093151.1 127511954 4923527 complement(1179811..1181286) 1 NC_009092.1 PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: shm:Shewmr7_2963 peptidase M23B; peptidase M23B 1181286 4923527 Shew_1021 Shewanella loihica PV-4 peptidase M23B YP_001093151.1 1179811 R 323850 CDS YP_001093152.1 127511955 4924137 1181413..1182609 1 NC_009092.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1182609 4924137 Shew_1022 Shewanella loihica PV-4 tyrosyl-tRNA synthetase YP_001093152.1 1181413 D 323850 CDS YP_001093153.1 127511956 4923756 complement(1182756..1183235) 1 NC_009092.1 KEGG: shm:Shewmr7_2960 hypothetical protein; hypothetical protein 1183235 4923756 Shew_1023 Shewanella loihica PV-4 hypothetical protein YP_001093153.1 1182756 R 323850 CDS YP_001093154.1 127511957 4923547 complement(1183237..1183857) 1 NC_009092.1 PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_2959 protein of unknown function UPF0126; hypothetical protein 1183857 4923547 Shew_1024 Shewanella loihica PV-4 hypothetical protein YP_001093154.1 1183237 R 323850 CDS YP_001093155.1 127511958 4923548 complement(1183854..1184243) 1 NC_009092.1 KEGG: son:SO1320 hypothetical protein; hypothetical protein 1184243 4923548 Shew_1025 Shewanella loihica PV-4 hypothetical protein YP_001093155.1 1183854 R 323850 CDS YP_001093156.1 127511959 4923559 complement(1184359..1185342) 1 NC_009092.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: she:Shewmr4_2875 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB 1185342 4923559 Shew_1026 Shewanella loihica PV-4 cobalamin biosynthesis protein CbiB YP_001093156.1 1184359 R 323850 CDS YP_001093157.1 127511960 4923810 complement(1185380..1186072) 1 NC_009092.1 PFAM: purine and other phosphorylases, family 1; KEGG: she:Shewmr4_2874 methylthioadenosine nucleosidase; methylthioadenosine nucleosidase 1186072 4923810 Shew_1027 Shewanella loihica PV-4 methylthioadenosine nucleosidase YP_001093157.1 1185380 R 323850 CDS YP_001093158.1 127511961 4920862 complement(1186752..1187357) 1 NC_009092.1 KEGG: mes:Meso_4150 hypothetical protein; hypothetical protein 1187357 4920862 Shew_1028 Shewanella loihica PV-4 hypothetical protein YP_001093158.1 1186752 R 323850 CDS YP_001093159.1 127511962 4920847 complement(1187357..1187809) 1 NC_009092.1 KEGG: cyb:CYB_0385 hypothetical protein; hypothetical protein 1187809 4920847 Shew_1029 Shewanella loihica PV-4 hypothetical protein YP_001093159.1 1187357 R 323850 CDS YP_001093160.1 127511963 4920834 complement(1187802..1188503) 1 NC_009092.1 hypothetical protein 1188503 4920834 Shew_1030 Shewanella loihica PV-4 hypothetical protein YP_001093160.1 1187802 R 323850 CDS YP_001093161.1 127511964 4920781 complement(1189496..1190905) 1 NC_009092.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1190905 gltD 4920781 gltD Shewanella loihica PV-4 glutamate synthase subunit beta YP_001093161.1 1189496 R 323850 CDS YP_001093162.1 127511965 4920695 complement(1190911..1195359) 1 NC_009092.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 1195359 gltB 4920695 gltB Shewanella loihica PV-4 glutamate synthase subunit alpha YP_001093162.1 1190911 R 323850 CDS YP_001093163.1 127511966 4920696 1195790..1196782 1 NC_009092.1 KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 1196782 4920696 Shew_1033 Shewanella loihica PV-4 putative radical SAM protein YP_001093163.1 1195790 D 323850 CDS YP_001093164.1 127511967 4920644 1196956..1197321 1 NC_009092.1 PFAM: Hpt domain protein; KEGG: shm:Shewmr7_2951 Hpt protein; Hpt protein 1197321 4920644 Shew_1034 Shewanella loihica PV-4 Hpt protein YP_001093164.1 1196956 D 323850 CDS YP_001093165.1 127511968 4920630 1197527..1198444 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family; LysR family transcriptional regulator 1198444 4920630 Shew_1035 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093165.1 1197527 D 323850 CDS YP_001093166.1 127511969 4920605 complement(1198447..1199466) 1 NC_009092.1 KEGG: shm:Shewmr7_2949 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase 1199466 4920605 Shew_1036 Shewanella loihica PV-4 putative adenylate/guanylate cyclase YP_001093166.1 1198447 R 323850 CDS YP_001093167.1 127511970 4920592 complement(1199866..1200537) 1 NC_009092.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1200537 4920592 Shew_1037 Shewanella loihica PV-4 DNA mismatch repair protein YP_001093167.1 1199866 R 323850 CDS YP_001093168.1 127511971 4920563 1201232..1201756 1 NC_009092.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1201756 4920563 Shew_1038 Shewanella loihica PV-4 dinucleoside polyphosphate hydrolase YP_001093168.1 1201232 D 323850 CDS YP_001093169.1 127511972 4920620 1201791..1204022 1 NC_009092.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: shm:Shewmr7_2946 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1204022 4920620 Shew_1039 Shewanella loihica PV-4 phosphoenolpyruvate-protein phosphotransferase PtsP YP_001093169.1 1201791 D 323850 CDS YP_001093170.1 127511973 4924230 1204127..1204921 1 NC_009092.1 PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2945 protein of unknown function DUF81; hypothetical protein 1204921 4924230 Shew_1040 Shewanella loihica PV-4 hypothetical protein YP_001093170.1 1204127 D 323850 CDS YP_001093171.1 127511974 4924231 1205044..1205895 1 NC_009092.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1205895 thyA 4924231 thyA Shewanella loihica PV-4 thymidylate synthase YP_001093171.1 1205044 D 323850 CDS YP_001093172.1 127511975 4924235 1206202..1207377 1 NC_009092.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1207377 nhaA 4924235 nhaA Shewanella loihica PV-4 pH-dependent sodium/proton antiporter YP_001093172.1 1206202 D 323850 CDS YP_001093173.1 127511976 4924270 1207374..1207757 1 NC_009092.1 KEGG: son:SO1337 hypothetical protein; hypothetical protein 1207757 4924270 Shew_1043 Shewanella loihica PV-4 hypothetical protein YP_001093173.1 1207374 D 323850 CDS YP_001093174.1 127511977 4924287 1207778..1208686 1 NC_009092.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1208686 nhaR 4924287 nhaR Shewanella loihica PV-4 transcriptional activator NhaR YP_001093174.1 1207778 D 323850 CDS YP_001093175.1 127511978 4924220 1208751..1209002 1 NC_009092.1 PFAM: protein of unknown function DUF339; KEGG: shm:Shewmr7_2939 protein of unknown function DUF339; hypothetical protein 1209002 4924220 Shew_1045 Shewanella loihica PV-4 hypothetical protein YP_001093175.1 1208751 D 323850 CDS YP_001093176.1 127511979 4921458 1208983..1209438 1 NC_009092.1 KEGG: she:Shewmr4_2856 hypothetical protein; hypothetical protein 1209438 4921458 Shew_1046 Shewanella loihica PV-4 hypothetical protein YP_001093176.1 1208983 D 323850 CDS YP_001093177.1 127511980 4921428 complement(1209447..1211060) 1 NC_009092.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1211060 4921428 Shew_1047 Shewanella loihica PV-4 L-aspartate oxidase YP_001093177.1 1209447 R 323850 CDS YP_001093178.1 127511981 4922529 1211260..1211838 1 NC_009092.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1211838 4922529 Shew_1048 Shewanella loihica PV-4 RNA polymerase sigma factor RpoE YP_001093178.1 1211260 D 323850 CDS YP_001093179.1 127511982 4922530 1211878..1212480 1 NC_009092.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: shm:Shewmr7_2935 anti sigma-E protein, RseA; anti sigma-E protein, RseA 1212480 4922530 Shew_1049 Shewanella loihica PV-4 anti sigma-E protein, RseA YP_001093179.1 1211878 D 323850 CDS YP_001093180.1 127511983 4923399 1212546..1213478 1 NC_009092.1 PFAM: MucB/RseB family protein; KEGG: she:Shewmr4_2852 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 1213478 4923399 Shew_1050 Shewanella loihica PV-4 sigma E regulatory protein MucB/RseB YP_001093180.1 1212546 D 323850 CDS YP_001093181.1 127511984 4920948 1213486..1213962 1 NC_009092.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: sdn:Sden_2769 positive regulator of sigma(E), RseC/MucC; sigma E positive regulator RseC/MucC 1213962 4920948 Shew_1051 Shewanella loihica PV-4 sigma E positive regulator RseC/MucC YP_001093181.1 1213486 D 323850 CDS YP_001093182.1 127511985 4922314 1214071..1215861 1 NC_009092.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1215861 4922314 Shew_1052 Shewanella loihica PV-4 GTP-binding protein LepA YP_001093182.1 1214071 D 323850 CDS YP_001093183.1 127511986 4923026 1216015..1216932 1 NC_009092.1 KEGG: shm:Shewmr7_2931 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 1216932 4923026 Shew_1053 Shewanella loihica PV-4 signal peptidase I YP_001093183.1 1216015 D 323850 CDS YP_001093184.1 127511987 4921965 1216933..1217610 1 NC_009092.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1217610 rnc 4921965 rnc Shewanella loihica PV-4 ribonuclease III YP_001093184.1 1216933 D 323850 CDS YP_001093185.1 127511988 4921107 1217607..1218602 1 NC_009092.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1218602 era 4921107 era Shewanella loihica PV-4 GTP-binding protein Era YP_001093185.1 1217607 D 323850 CDS YP_001093186.1 127511989 4921108 1218707..1219402 1 NC_009092.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: shm:Shewmr7_2928 DNA repair protein RecO; DNA repair protein RecO 1219402 4921108 Shew_1056 Shewanella loihica PV-4 DNA repair protein RecO YP_001093186.1 1218707 D 323850 CDS YP_001093187.1 127511990 4921109 1219531..1220268 1 NC_009092.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1220268 4921109 Shew_1057 Shewanella loihica PV-4 pyridoxine 5'-phosphate synthase YP_001093187.1 1219531 D 323850 CDS YP_001093188.1 127511991 4921532 1220313..1220714 1 NC_009092.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1220714 acpS 4921532 acpS Shewanella loihica PV-4 4'-phosphopantetheinyl transferase YP_001093188.1 1220313 D 323850 CDS YP_001093189.1 127511992 4921833 1220981..1221523 1 NC_009092.1 PFAM: protein of unknown function DUF962; KEGG: sfr:Sfri_2924 protein of unknown function DUF962; hypothetical protein 1221523 4921833 Shew_1059 Shewanella loihica PV-4 hypothetical protein YP_001093189.1 1220981 D 323850 CDS YP_001093190.1 127511993 4922049 complement(1221590..1222873) 1 NC_009092.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sfr:Sfri_2923 protein of unknown function DUF21; hypothetical protein 1222873 4922049 Shew_1060 Shewanella loihica PV-4 hypothetical protein YP_001093190.1 1221590 R 323850 CDS YP_001093191.1 127511994 4924360 complement(1223020..1223808) 1 NC_009092.1 PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_2922 cytochrome c assembly protein; cytochrome c assembly protein 1223808 4924360 Shew_1061 Shewanella loihica PV-4 cytochrome c assembly protein YP_001093191.1 1223020 R 323850 CDS YP_001093192.1 127511995 4922416 1224101..1225474 1 NC_009092.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1225474 4922416 Shew_1062 Shewanella loihica PV-4 signal recognition particle protein YP_001093192.1 1224101 D 323850 CDS YP_001093193.1 127511996 4922775 1225680..1225931 1 NC_009092.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1225931 rpsP 4922775 rpsP Shewanella loihica PV-4 30S ribosomal protein S16 YP_001093193.1 1225680 D 323850 CDS YP_001093194.1 127511997 4923884 1225952..1226482 1 NC_009092.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1226482 rimM 4923884 rimM Shewanella loihica PV-4 16S rRNA-processing protein RimM YP_001093194.1 1225952 D 323850 CDS YP_001093195.1 127511998 4923885 1226498..1227244 1 NC_009092.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1227244 trmD 4923885 trmD Shewanella loihica PV-4 tRNA (guanine-N(1)-)-methyltransferase YP_001093195.1 1226498 D 323850 CDS YP_001093196.1 127511999 4923679 1227279..1227629 1 NC_009092.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1227629 rplS 4923679 rplS Shewanella loihica PV-4 50S ribosomal protein L19 YP_001093196.1 1227279 D 323850 CDS YP_001093197.1 127512000 4920576 1228034..1229125 1 NC_009092.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1229125 4920576 Shew_1067 Shewanella loihica PV-4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001093197.1 1228034 D 323850 CDS YP_001093198.1 127512001 4924379 1229125..1230279 1 NC_009092.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1230279 tyrA 4924379 tyrA Shewanella loihica PV-4 bifunctional chorismate mutase/prephenate dehydrogenase YP_001093198.1 1229125 D 323850 CDS YP_001093199.1 127512002 4924381 1230817..1232481 1 NC_009092.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1232481 4924381 Shew_1069 Shewanella loihica PV-4 hydroxylamine reductase YP_001093199.1 1230817 D 323850 CDS YP_001093200.1 127512003 4923446 1232541..1233626 1 NC_009092.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sfr:Sfri_3608 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1233626 4923446 Shew_1070 Shewanella loihica PV-4 oxidoreductase FAD-binding subunit YP_001093200.1 1232541 D 323850 CDS YP_001093201.1 127512004 4920583 1233877..1234212 1 NC_009092.1 KEGG: son:SO1365 hypothetical protein; hypothetical protein 1234212 4920583 Shew_1071 Shewanella loihica PV-4 hypothetical protein YP_001093201.1 1233877 D 323850 CDS YP_001093202.1 127512005 4923401 complement(1234289..1236253) 1 NC_009092.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: shm:Shewmr7_2910 chorismate mutase; chorismate mutase 1236253 4923401 Shew_1072 Shewanella loihica PV-4 chorismate mutase YP_001093202.1 1234289 R 323850 CDS YP_001093203.1 127512006 4923402 complement(1237259..1237633) 1 NC_009092.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1203 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1237633 4923402 Shew_1073 Shewanella loihica PV-4 sigma 54 modulation protein/ribosomal protein S30EA YP_001093203.1 1237259 R 323850 CDS YP_001093204.1 127512007 4920865 1237896..1238591 1 NC_009092.1 PFAM: cytochrome B561; KEGG: she:Shewmr4_1133 cytochrome b561; cytochrome B561 1238591 4920865 Shew_1074 Shewanella loihica PV-4 cytochrome B561 YP_001093204.1 1237896 D 323850 CDS YP_001093205.1 127512008 4920971 complement(1238761..1239222) 1 NC_009092.1 PFAM: cytochrome c, class II; KEGG: sfr:Sfri_2910 cytochrome c, class II; cytochrome c, class II 1239222 4920971 Shew_1075 Shewanella loihica PV-4 cytochrome c, class II YP_001093205.1 1238761 R 323850 CDS YP_001093206.1 127512009 4920944 1239375..1239728 1 NC_009092.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sdn:Sden_2743 Trp repressor; Trp operon repressor 1239728 4920944 Shew_1076 Shewanella loihica PV-4 Trp operon repressor YP_001093206.1 1239375 D 323850 CDS YP_001093207.1 127512010 4923749 complement(1239804..1240235) 1 NC_009092.1 KEGG: shm:Shewmr7_1207 hypothetical protein; hypothetical protein 1240235 4923749 Shew_1077 Shewanella loihica PV-4 hypothetical protein YP_001093207.1 1239804 R 323850 CDS YP_001093208.1 127512011 4921043 complement(1240366..1240980) 1 NC_009092.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type 1240980 4921043 Shew_1078 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001093208.1 1240366 R 323850 CDS YP_001093209.1 127512012 4923784 1241698..1244166 1 NC_009092.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1244166 thrA 4923784 thrA Shewanella loihica PV-4 bifunctional aspartokinase I/homoserine dehydrogenase I YP_001093209.1 1241698 D 323850 CDS YP_001093210.1 127512013 4924068 1244163..1245113 1 NC_009092.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1245113 4924068 Shew_1080 Shewanella loihica PV-4 homoserine kinase YP_001093210.1 1244163 D 323850 CDS YP_001093211.1 127512014 4924069 1245127..1246410 1 NC_009092.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1246410 4924069 Shew_1081 Shewanella loihica PV-4 threonine synthase YP_001093211.1 1245127 D 323850 CDS YP_001093212.1 127512015 4923965 1246769..1247065 1 NC_009092.1 KEGG: shm:Shewmr7_1212 hypothetical protein; hypothetical protein 1247065 4923965 Shew_1082 Shewanella loihica PV-4 hypothetical protein YP_001093212.1 1246769 D 323850 CDS YP_001093213.1 127512016 4922776 complement(1247062..1247913) 1 NC_009092.1 KEGG: spt:SPA0648 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2; apurinic endonuclease Apn1 1247913 4922776 Shew_1083 Shewanella loihica PV-4 apurinic endonuclease Apn1 YP_001093213.1 1247062 R 323850 CDS YP_001093214.1 127512017 4921038 1248034..1250070 1 NC_009092.1 KEGG: mag:amb3313 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 1250070 4921038 Shew_1084 Shewanella loihica PV-4 PAS/PAC sensor hybrid histidine kinase YP_001093214.1 1248034 D 323850 CDS YP_001093215.1 127512018 4922443 1250067..1251161 1 NC_009092.1 PFAM: response regulator receiver; KEGG: dar:Daro_3172 response regulator receiver; response regulator receiver protein 1251161 4922443 Shew_1085 Shewanella loihica PV-4 response regulator receiver protein YP_001093215.1 1250067 D 323850 CDS YP_001093216.1 127512019 4921692 1251288..1251830 1 NC_009092.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sdn:Sden_2737 hemerythrin HHE cation binding region; hemerythrin HHE cation binding domain-containing protein 1251830 4921692 Shew_1086 Shewanella loihica PV-4 hemerythrin HHE cation binding domain-containing protein YP_001093216.1 1251288 D 323850 CDS YP_001093217.1 127512020 4922681 complement(1251895..1252086) 1 NC_009092.1 KEGG: sfr:Sfri_2902 hypothetical protein; hypothetical protein 1252086 4922681 Shew_1087 Shewanella loihica PV-4 hypothetical protein YP_001093217.1 1251895 R 323850 CDS YP_001093218.1 127512021 4923575 complement(1252316..1253953) 1 NC_009092.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1253953 pgi 4923575 pgi Shewanella loihica PV-4 glucose-6-phosphate isomerase YP_001093218.1 1252316 R 323850 CDS YP_001093219.1 127512022 4923576 complement(1253967..1254923) 1 NC_009092.1 KEGG: sdn:Sden_2734 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 1254923 4923576 Shew_1089 Shewanella loihica PV-4 transaldolase B YP_001093219.1 1253967 R 323850 CDS YP_001093220.1 127512023 4920779 complement(1255197..1256300) 1 NC_009092.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sfr:Sfri_2899 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1256300 4920779 Shew_1090 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001093220.1 1255197 R 323850 CDS YP_001093221.1 127512024 4920600 complement(1256548..1258914) 1 NC_009092.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: shm:Shewmr7_3047 phosphoketolase; putative phosphoketolase 1258914 4920600 Shew_1091 Shewanella loihica PV-4 putative phosphoketolase YP_001093221.1 1256548 R 323850 CDS YP_001093222.1 127512025 4923060 1259341..1260819 1 NC_009092.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dps:DP1274 probable sodium/alanine symporter; amino acid carrier protein 1260819 4923060 Shew_1092 Shewanella loihica PV-4 amino acid carrier protein YP_001093222.1 1259341 D 323850 CDS YP_001093223.1 127512026 4923583 1260947..1261723 1 NC_009092.1 PFAM: protein of unknown function DUF328; KEGG: ppr:PBPRA0561 hypothetical protein; hypothetical protein 1261723 4923583 Shew_1093 Shewanella loihica PV-4 hypothetical protein YP_001093223.1 1260947 D 323850 CDS YP_001093224.1 127512027 4923964 complement(1261904..1263310) 1 NC_009092.1 PFAM: peptidase M20; peptidase M28; KEGG: she:Shewmr4_2962 peptidase M28; peptidase M28 1263310 4923964 Shew_1094 Shewanella loihica PV-4 peptidase M28 YP_001093224.1 1261904 R 323850 CDS YP_001093225.1 127512028 4923727 1263446..1263742 1 NC_009092.1 PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_3043 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1263742 4923727 Shew_1095 Shewanella loihica PV-4 ArsR family transcriptional regulator YP_001093225.1 1263446 D 323850 CDS YP_001093226.1 127512029 4923464 complement(1263964..1264230) 1 NC_009092.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1264230 rpsT 4923464 rpsT Shewanella loihica PV-4 30S ribosomal protein S20 YP_001093226.1 1263964 R 323850 CDS YP_001093227.1 127512030 4923465 1264478..1266037 1 NC_009092.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: she:Shewmr4_2959 integral membrane protein MviN; integral membrane protein MviN 1266037 4923465 Shew_1097 Shewanella loihica PV-4 integral membrane protein MviN YP_001093227.1 1264478 D 323850 CDS YP_001093228.1 127512031 4923448 1266103..1267038 1 NC_009092.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: she:Shewmr4_2958 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1267038 4923448 Shew_1098 Shewanella loihica PV-4 riboflavin biosynthesis protein RibF YP_001093228.1 1266103 D 323850 CDS YP_001093229.1 127512032 4923352 1267071..1269893 1 NC_009092.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1269893 ileS 4923352 ileS Shewanella loihica PV-4 isoleucyl-tRNA synthetase YP_001093229.1 1267071 D 323850 CDS YP_001093230.1 127512033 4923369 1269903..1270415 1 NC_009092.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1270415 lspA 4923369 lspA Shewanella loihica PV-4 lipoprotein signal peptidase YP_001093230.1 1269903 D 323850 CDS YP_001093231.1 127512034 4923004 1270419..1270841 1 NC_009092.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_3037 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1270841 4923004 Shew_1101 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001093231.1 1270419 D 323850 CDS YP_001093232.1 127512035 4922797 1270844..1271794 1 NC_009092.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1271794 ispH 4922797 ispH Shewanella loihica PV-4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001093232.1 1270844 D 323850 CDS YP_001093233.1 127512036 4922429 1272026..1272547 1 NC_009092.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: shm:Shewmr7_3035 type IV pilus modification protein PilV; type IV pilus modification protein PilV 1272547 4922429 Shew_1103 Shewanella loihica PV-4 type IV pilus modification protein PilV YP_001093233.1 1272026 D 323850 CDS YP_001093234.1 127512037 4922768 1272548..1273534 1 NC_009092.1 KEGG: she:Shewmr4_2952 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 1273534 4922768 Shew_1104 Shewanella loihica PV-4 prepilin-type cleavage/methylation-like protein YP_001093234.1 1272548 D 323850 CDS YP_001093235.1 127512038 4922769 1273540..1273974 1 NC_009092.1 KEGG: she:Shewmr4_2951 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1273974 4922769 Shew_1105 Shewanella loihica PV-4 type IV pilus assembly protein PilX YP_001093235.1 1273540 D 323850 CDS YP_001093236.1 127512039 4922452 1273979..1277527 1 NC_009092.1 KEGG: she:Shewmr4_2950 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein, putative 1277527 4922452 Shew_1106 Shewanella loihica PV-4 type IV pilin biogenesis protein, putative YP_001093236.1 1273979 D 323850 CDS YP_001093237.1 127512040 4924361 1277531..1277923 1 NC_009092.1 KEGG: shm:Shewmr7_3031 methylation site containing protein; methylation site containing protein 1277923 4924361 Shew_1107 Shewanella loihica PV-4 methylation site containing protein YP_001093237.1 1277531 D 323850 CDS YP_001093238.1 127512041 4924356 complement(1278259..1278750) 1 NC_009092.1 KEGG: she:Shewmr4_2947 methylation site containing protein; methylation site containing protein 1278750 4924356 Shew_1108 Shewanella loihica PV-4 methylation site containing protein YP_001093238.1 1278259 R 323850 CDS YP_001093239.1 127512042 4922145 complement(1278887..1279399) 1 NC_009092.1 KEGG: son:SO3520 type IV pilus biogenesis protein, putative; type IV pilus biogenesis protein, putative 1279399 4922145 Shew_1109 Shewanella loihica PV-4 type IV pilus biogenesis protein, putative YP_001093239.1 1278887 R 323850 CDS YP_001093240.1 127512043 4921464 1279650..1279988 1 NC_009092.1 PFAM: nitrogen regulatory protein P-II; KEGG: sdn:Sden_2711 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1279988 4921464 Shew_1110 Shewanella loihica PV-4 nitrogen regulatory protein P-II YP_001093240.1 1279650 D 323850 CDS YP_001093241.1 127512044 4921426 complement(1280073..1281092) 1 NC_009092.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO3516 transcriptional regulator, LacI family; LacI family transcriptional regulator 1281092 4921426 Shew_1111 Shewanella loihica PV-4 LacI family transcriptional regulator YP_001093241.1 1280073 R 323850 CDS YP_001093242.1 127512045 4924322 1281505..1284129 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor; TonB-dependent receptor 1284129 4924322 Shew_1112 Shewanella loihica PV-4 TonB-dependent receptor YP_001093242.1 1281505 D 323850 CDS YP_001093243.1 127512046 4924323 1284252..1285778 1 NC_009092.1 PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase; tryptophan halogenase 1285778 4924323 Shew_1113 Shewanella loihica PV-4 tryptophan halogenase YP_001093243.1 1284252 D 323850 CDS YP_001093244.1 127512047 4921767 complement(1285876..1286595) 1 NC_009092.1 PFAM: SapC family protein; KEGG: pha:PSHAa1142 hypothetical protein; SapC family protein 1286595 4921767 Shew_1114 Shewanella loihica PV-4 SapC family protein YP_001093244.1 1285876 R 323850 CDS YP_001093245.1 127512048 4921270 1287898..1290564 1 NC_009092.1 PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: she:Shewmr4_2936 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1290564 4921270 Shew_1115 Shewanella loihica PV-4 beta-N-acetylhexosaminidase YP_001093245.1 1287898 D 323850 CDS YP_001093246.1 127512049 4921169 1290876..1291775 1 NC_009092.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: she:Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 1291775 4921169 Shew_1116 Shewanella loihica PV-4 BadF/BadG/BcrA/BcrD type ATPase YP_001093246.1 1290876 D 323850 CDS YP_001093247.1 127512050 4921047 1291843..1292973 1 NC_009092.1 KEGG: sdn:Sden_2704 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1292973 4921047 Shew_1117 Shewanella loihica PV-4 N-acetylglucosamine-6-phosphate deacetylase YP_001093247.1 1291843 D 323850 CDS YP_001093248.1 127512051 4920997 1293141..1294304 1 NC_009092.1 KEGG: shm:Shewmr7_3014 hypothetical protein; hypothetical protein 1294304 4920997 Shew_1118 Shewanella loihica PV-4 hypothetical protein YP_001093248.1 1293141 D 323850 CDS YP_001093249.1 127512052 4921037 1294566..1295822 1 NC_009092.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_3013 glucose/galactose transporter; glucose/galactose transporter 1295822 4921037 Shew_1119 Shewanella loihica PV-4 glucose/galactose transporter YP_001093249.1 1294566 D 323850 CDS YP_001093250.1 127512053 4923244 1296554..1297108 1 NC_009092.1 PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561; cytochrome B561 1297108 4923244 Shew_1120 Shewanella loihica PV-4 cytochrome B561 YP_001093250.1 1296554 D 323850 CDS YP_001093251.1 127512054 4921227 1297162..1297695 1 NC_009092.1 PFAM: YceI family protein; KEGG: sfr:Sfri_2875 YceI family protein; hypothetical protein 1297695 4921227 Shew_1121 Shewanella loihica PV-4 hypothetical protein YP_001093251.1 1297162 D 323850 CDS YP_001093252.1 127512055 4924290 complement(1297772..1298050) 1 NC_009092.1 PFAM: Fe(II) trafficking protein YggX; KEGG: sfr:Sfri_2874 Fe(II) trafficking protein YggX; hypothetical protein 1298050 4924290 Shew_1122 Shewanella loihica PV-4 hypothetical protein YP_001093252.1 1297772 R 323850 CDS YP_001093253.1 127512056 4921084 complement(1298053..1299159) 1 NC_009092.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: she:Shewmr4_1180 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 1299159 4921084 Shew_1123 Shewanella loihica PV-4 A/G-specific adenine glycosylase YP_001093253.1 1298053 R 323850 CDS YP_001093254.1 127512057 4923842 1299395..1300111 1 NC_009092.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1300111 trmB 4923842 trmB Shewanella loihica PV-4 tRNA (guanine-N(7)-)-methyltransferase YP_001093254.1 1299395 D 323850 CDS YP_001093255.1 127512058 4922119 1300142..1300465 1 NC_009092.1 PFAM: protein of unknown function DUF469; KEGG: sdn:Sden_2696 protein of unknown function DUF469; hypothetical protein 1300465 4922119 Shew_1125 Shewanella loihica PV-4 hypothetical protein YP_001093255.1 1300142 D 323850 CDS YP_001093256.1 127512059 4924329 1300465..1301379 1 NC_009092.1 catalyzes the formation of glutamate from glutamine; glutaminase 1301379 4924329 Shew_1126 Shewanella loihica PV-4 glutaminase YP_001093256.1 1300465 D 323850 CDS YP_001093257.1 127512060 4921148 1301679..1302509 1 NC_009092.1 KEGG: shm:Shewmr7_1255 hypothetical protein; hypothetical protein 1302509 4921148 Shew_1127 Shewanella loihica PV-4 hypothetical protein YP_001093257.1 1301679 D 323850 CDS YP_001093258.1 127512061 4921869 1302855..1303796 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1256 transcriptional regulator, LysR family; LysR family transcriptional regulator 1303796 4921869 Shew_1128 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093258.1 1302855 D 323850 CDS YP_001093259.1 127512062 4921870 1304516..1305220 1 NC_009092.1 KEGG: vfi:VF1468 hypothetical protein; hypothetical protein 1305220 4921870 Shew_1129 Shewanella loihica PV-4 hypothetical protein YP_001093259.1 1304516 D 323850 CDS YP_001093260.1 127512063 4924116 complement(1305355..1307196) 1 NC_009092.1 PFAM: protein of unknown function DUF885; KEGG: shm:Shewmr7_1257 protein of unknown function DUF885; hypothetical protein 1307196 4924116 Shew_1130 Shewanella loihica PV-4 hypothetical protein YP_001093260.1 1305355 R 323850 CDS YP_001093261.1 127512064 4922053 complement(1307332..1308471) 1 NC_009092.1 KEGG: shm:Shewmr7_1258 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 1308471 4922053 Shew_1131 Shewanella loihica PV-4 putative oxygen-independent coproporphyrinogen III oxidase YP_001093261.1 1307332 R 323850 CDS YP_001093262.1 127512065 4921491 complement(1308471..1309142) 1 NC_009092.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1309142 4921491 Shew_1132 Shewanella loihica PV-4 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001093262.1 1308471 R 323850 CDS YP_001093263.1 127512066 4923655 complement(1309212..1309646) 1 NC_009092.1 KEGG: shm:Shewmr7_1260 hypothetical protein; hypothetical protein 1309646 4923655 Shew_1133 Shewanella loihica PV-4 hypothetical protein YP_001093263.1 1309212 R 323850 CDS YP_001093264.1 127512067 4923685 complement(1309733..1310023) 1 NC_009092.1 PFAM: protein of unknown function DUF167; KEGG: ppr:PBPRA3146 hypothetical protein; hypothetical protein 1310023 4923685 Shew_1134 Shewanella loihica PV-4 hypothetical protein YP_001093264.1 1309733 R 323850 CDS YP_001093265.1 127512068 4923642 complement(1310024..1310572) 1 NC_009092.1 PFAM: protein of unknown function YGGT; KEGG: sdn:Sden_2684 protein of unknown function YGGT; hypothetical protein 1310572 4923642 Shew_1135 Shewanella loihica PV-4 hypothetical protein YP_001093265.1 1310024 R 323850 CDS YP_001093266.1 127512069 4923515 complement(1310633..1311451) 1 NC_009092.1 KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 1311451 4923515 Shew_1136 Shewanella loihica PV-4 pyrroline-5-carboxylate reductase YP_001093266.1 1310633 R 323850 CDS YP_001093267.1 127512070 4923516 complement(1311533..1312234) 1 NC_009092.1 PFAM: alanine racemase domain protein; KEGG: sfr:Sfri_2860 protein of unknown function UPF0001; alanine racemase domain-containing protein 1312234 4923516 Shew_1137 Shewanella loihica PV-4 alanine racemase domain-containing protein YP_001093267.1 1311533 R 323850 CDS YP_001093268.1 127512071 4923240 1312270..1313307 1 NC_009092.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: sfr:Sfri_2859 twitching motility protein; twitching motility protein 1313307 4923240 Shew_1138 Shewanella loihica PV-4 twitching motility protein YP_001093268.1 1312270 D 323850 CDS YP_001093269.1 127512072 4923087 1313320..1314432 1 NC_009092.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: shm:Shewmr7_1266 twitching motility protein; twitching motility protein 1314432 4923087 Shew_1139 Shewanella loihica PV-4 twitching motility protein YP_001093269.1 1313320 D 323850 CDS YP_001093270.1 127512073 4923041 1314559..1315626 1 NC_009092.1 PFAM: ferrochelatase; KEGG: sfr:Sfri_2852 ferrochelatase; ferrochelatase 1315626 4923041 Shew_1140 Shewanella loihica PV-4 ferrochelatase YP_001093270.1 1314559 D 323850 CDS YP_001093271.1 127512074 4922799 complement(1316043..1317056) 1 NC_009092.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1317056 4922799 Shew_1141 Shewanella loihica PV-4 transposase IS116/IS110/IS902 family protein YP_001093271.1 1316043 R 323850 CDS YP_001093272.1 127512075 4922617 1317630..1319018 1 NC_009092.1 PFAM: AAA-4 family protein; KEGG: tbd:Tbd_1077 predicted transcriptional regulator; putative transcriptional regulator 1319018 4922617 Shew_1142 Shewanella loihica PV-4 putative transcriptional regulator YP_001093272.1 1317630 D 323850 CDS YP_001093273.1 127512076 4922519 complement(1320077..1320496) 1 NC_009092.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1320496 4922519 Shew_1143 Shewanella loihica PV-4 Holliday junction resolvase-like protein YP_001093273.1 1320077 R 323850 CDS YP_001093274.1 127512077 4922423 complement(1320518..1321075) 1 NC_009092.1 PFAM: protein of unknown function DUF179; KEGG: shm:Shewmr7_1270 protein of unknown function DUF179; hypothetical protein 1321075 4922423 Shew_1144 Shewanella loihica PV-4 hypothetical protein YP_001093274.1 1320518 R 323850 CDS YP_001093275.1 127512078 4922424 complement(1321092..1321421) 1 NC_009092.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1321421 4922424 Shew_1145 Shewanella loihica PV-4 translation initiation factor Sui1 YP_001093275.1 1321092 R 323850 CDS YP_001093276.1 127512079 4922418 complement(1321638..1321952) 1 NC_009092.1 KEGG: she:Shewmr4_1201 hypothetical protein; hypothetical protein 1321952 4922418 Shew_1146 Shewanella loihica PV-4 hypothetical protein YP_001093276.1 1321638 R 323850 CDS YP_001093277.1 127512080 4922249 1322126..1322689 1 NC_009092.1 KEGG: son:SO3343 hypothetical protein; hypothetical protein 1322689 4922249 Shew_1147 Shewanella loihica PV-4 hypothetical protein YP_001093277.1 1322126 D 323850 CDS YP_001093278.1 127512081 4922042 1322950..1323399 1 NC_009092.1 KEGG: hch:HCH_04766 hypothetical protein; hypothetical protein 1323399 4922042 Shew_1148 Shewanella loihica PV-4 hypothetical protein YP_001093278.1 1322950 D 323850 CDS YP_001093279.1 127512082 4921831 complement(1323548..1324423) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; LysR family transcriptional regulator 1324423 4921831 Shew_1149 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093279.1 1323548 R 323850 CDS YP_001093280.1 127512083 4921461 1324509..1324931 1 NC_009092.1 PFAM: transmembrane pair domain protein; KEGG: vpa:VP1155 hypothetical protein; transmembrane pair domain-containing protein 1324931 4921461 Shew_1150 Shewanella loihica PV-4 transmembrane pair domain-containing protein YP_001093280.1 1324509 D 323850 CDS YP_001093281.1 127512084 4921319 1325148..1325852 1 NC_009092.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein 1325852 4921319 Shew_1151 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001093281.1 1325148 D 323850 CDS YP_001093282.1 127512085 4921087 1325882..1326706 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_1276 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1326706 4921087 Shew_1152 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001093282.1 1325882 D 323850 CDS YP_001093283.1 127512086 4923245 complement(1326958..1327611) 1 NC_009092.1 PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_1274 protein of unknown function UPF0126; hypothetical protein 1327611 4923245 Shew_1154 Shewanella loihica PV-4 hypothetical protein YP_001093283.1 1326958 R 323850 CDS YP_001093284.1 127512087 4921482 1327929..1328936 1 NC_009092.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase; threonine aldolase 1328936 4921482 Shew_1155 Shewanella loihica PV-4 threonine aldolase YP_001093284.1 1327929 D 323850 CDS YP_001093285.1 127512088 4922521 complement(1329016..1329849) 1 NC_009092.1 KEGG: shm:Shewmr7_0585 hypothetical protein; hypothetical protein 1329849 4922521 Shew_1156 Shewanella loihica PV-4 hypothetical protein YP_001093285.1 1329016 R 323850 CDS YP_001093286.1 127512089 4921558 complement(1329935..1331572) 1 NC_009092.1 PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0584 alkaline phosphatase; alkaline phosphatase 1331572 4921558 Shew_1157 Shewanella loihica PV-4 alkaline phosphatase YP_001093286.1 1329935 R 323850 CDS YP_001093287.1 127512090 4921827 complement(1331587..1333095) 1 NC_009092.1 PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0583 alkaline phosphatase; alkaline phosphatase 1333095 4921827 Shew_1158 Shewanella loihica PV-4 alkaline phosphatase YP_001093287.1 1331587 R 323850 CDS YP_001093288.1 127512091 4923353 1333367..1333735 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2843 thioesterase superfamily protein; thioesterase superfamily protein 1333735 4923353 Shew_1159 Shewanella loihica PV-4 thioesterase superfamily protein YP_001093288.1 1333367 D 323850 CDS YP_001093289.1 127512092 4920646 complement(1333920..1334126) 1 NC_009092.1 KEGG: son:SO1487 hypothetical protein; hypothetical protein 1334126 4920646 Shew_1160 Shewanella loihica PV-4 hypothetical protein YP_001093289.1 1333920 R 323850 CDS YP_001093290.1 127512093 4921489 complement(1334285..1335586) 1 NC_009092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stt:t1709 NADH dehydrogenase; NADH dehydrogenase 1335586 4921489 Shew_1161 Shewanella loihica PV-4 NADH dehydrogenase YP_001093290.1 1334285 R 323850 CDS YP_001093291.1 127512094 4921490 complement(1335899..1336273) 1 NC_009092.1 KEGG: she:Shewmr4_2763 hypothetical protein; hypothetical protein 1336273 4921490 Shew_1162 Shewanella loihica PV-4 hypothetical protein YP_001093291.1 1335899 R 323850 CDS YP_001093292.1 127512095 4921860 1336740..1337897 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_1536 efflux transporter, MFP subunit, AcrA/E family; RND family efflux transporter MFP subunit 1337897 4921860 Shew_1163 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001093292.1 1336740 D 323850 CDS YP_001093293.1 127512096 4922441 1337910..1341032 1 NC_009092.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: vpa:VPA0471 putative multidrug efflux membrane fusion protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1341032 4922441 Shew_1164 Shewanella loihica PV-4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001093293.1 1337910 D 323850 CDS YP_001093294.1 127512097 4924139 complement(1341110..1341319) 1 NC_009092.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB1929 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein 1341319 4924139 Shew_1165 Shewanella loihica PV-4 cold-shock DNA-binding domain-containing protein YP_001093294.1 1341110 R 323850 CDS YP_001093295.1 127512098 4923808 complement(1342277..1343425) 1 NC_009092.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: shm:Shewmr7_2840 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1343425 4923808 Shew_1166 Shewanella loihica PV-4 iron-containing alcohol dehydrogenase YP_001093295.1 1342277 R 323850 CDS YP_001093296.1 127512099 4921040 1343941..1346178 1 NC_009092.1 KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 1346178 4921040 Shew_1167 Shewanella loihica PV-4 4-alpha-glucanotransferase YP_001093296.1 1343941 D 323850 CDS YP_001093297.1 127512100 4921318 1346226..1348523 1 NC_009092.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1348523 4921318 Shew_1168 Shewanella loihica PV-4 glycogen branching protein YP_001093297.1 1346226 D 323850 CDS YP_001093298.1 127512101 4921416 1348514..1350715 1 NC_009092.1 KEGG: shm:Shewmr7_2835 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 1350715 4921416 Shew_1169 Shewanella loihica PV-4 glycogen debranching protein GlgX YP_001093298.1 1348514 D 323850 CDS YP_001093299.1 127512102 4921417 1350712..1353222 1 NC_009092.1 KEGG: she:Shewmr4_2756 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 1353222 4921417 Shew_1170 Shewanella loihica PV-4 glycogen/starch/alpha-glucan phosphorylase YP_001093299.1 1350712 D 323850 CDS YP_001093300.1 127512103 4921412 1353301..1354575 1 NC_009092.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1354575 glgC 4921412 glgC Shewanella loihica PV-4 glucose-1-phosphate adenylyltransferase YP_001093300.1 1353301 D 323850 CDS YP_001093301.1 127512104 4921200 1354568..1356217 1 NC_009092.1 PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase; starch synthase 1356217 4921200 Shew_1172 Shewanella loihica PV-4 starch synthase YP_001093301.1 1354568 D 323850 CDS YP_001093302.1 127512105 4921510 complement(1356261..1356734) 1 NC_009092.1 PFAM: protein of unknown function DUF88; KEGG: she:Shewmr4_1080 protein of unknown function DUF88; hypothetical protein 1356734 4921510 Shew_1173 Shewanella loihica PV-4 hypothetical protein YP_001093302.1 1356261 R 323850 CDS YP_001093303.1 127512106 4921982 1356928..1358523 1 NC_009092.1 PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0890 sulfotransferase; sulfotransferase 1358523 4921982 Shew_1174 Shewanella loihica PV-4 sulfotransferase YP_001093303.1 1356928 D 323850 CDS YP_001093304.1 127512107 4922124 complement(1358695..1359846) 1 NC_009092.1 PFAM: SEC-C motif domain protein; Aspartyl/Asparaginyl beta-hydroxylase; Cupin 2, conserved barrel domain protein; KEGG: sfr:Sfri_0891 sec-C motif domain protein; SecC motif-containing protein 1359846 4922124 Shew_1175 Shewanella loihica PV-4 SecC motif-containing protein YP_001093304.1 1358695 R 323850 CDS YP_001093305.1 127512108 4922368 complement(1359863..1360942) 1 NC_009092.1 PFAM: sulfotransferase; SEC-C motif domain protein; KEGG: sfr:Sfri_0892 sec-C motif domain protein; SecC motif-containing protein 1360942 4922368 Shew_1176 Shewanella loihica PV-4 SecC motif-containing protein YP_001093305.1 1359863 R 323850 CDS YP_001093306.1 127512109 4922419 1361267..1362520 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_1150 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1362520 4922419 Shew_1177 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001093306.1 1361267 D 323850 CDS YP_001093307.1 127512110 4922420 1362520..1365648 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1149 acriflavin resistance protein; acriflavin resistance protein 1365648 4922420 Shew_1178 Shewanella loihica PV-4 acriflavin resistance protein YP_001093307.1 1362520 D 323850 CDS YP_001093308.1 127512111 4922594 1366677..1370291 1 NC_009092.1 KEGG: she:Shewmr4_1087 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein, putative 1370291 4922594 Shew_1179 Shewanella loihica PV-4 type IV pilin biogenesis protein, putative YP_001093308.1 1366677 D 323850 CDS YP_001093309.1 127512112 4922481 1370373..1370684 1 NC_009092.1 KEGG: she:Shewmr4_1088 hypothetical protein; hypothetical protein 1370684 4922481 Shew_1180 Shewanella loihica PV-4 hypothetical protein YP_001093309.1 1370373 D 323850 CDS YP_001093310.1 127512113 4922899 complement(1370809..1371939) 1 NC_009092.1 PFAM: PepSY-associated TM helix domain protein; KEGG: cps:CPS_2723 putative iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein 1371939 4922899 Shew_1181 Shewanella loihica PV-4 PepSY-associated TM helix domain-containing protein YP_001093310.1 1370809 R 323850 CDS YP_001093311.1 127512114 4922885 complement(1372354..1373472) 1 NC_009092.1 PFAM: metallophosphoesterase; KEGG: she:Shewmr4_1086 metallophosphoesterase; metallophosphoesterase 1373472 4922885 Shew_1182 Shewanella loihica PV-4 metallophosphoesterase YP_001093311.1 1372354 R 323850 CDS YP_001093312.1 127512115 4923581 complement(1373686..1375350) 1 NC_009092.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1375350 4923581 Shew_1183 Shewanella loihica PV-4 putative ABC transporter ATP-binding protein YP_001093312.1 1373686 R 323850 CDS YP_001093313.1 127512116 4923580 1375662..1377287 1 NC_009092.1 KEGG: ade:Adeh_0489 hypothetical protein; hypothetical protein 1377287 4923580 Shew_1184 Shewanella loihica PV-4 hypothetical protein YP_001093313.1 1375662 D 323850 CDS YP_001093314.1 127512117 4923651 1377630..1378883 1 NC_009092.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1378883 glyA 4923651 glyA Shewanella loihica PV-4 serine hydroxymethyltransferase YP_001093314.1 1377630 D 323850 CDS YP_001093315.1 127512118 4923652 1379008..1379481 1 NC_009092.1 PFAM: ATP-cone domain protein; KEGG: sfr:Sfri_1034 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 1379481 nrdR 4923652 nrdR Shewanella loihica PV-4 transcriptional regulator NrdR YP_001093315.1 1379008 D 323850 CDS YP_001093316.1 127512119 4923298 1379520..1380680 1 NC_009092.1 KEGG: she:Shewmr4_1096 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1380680 4923298 Shew_1187 Shewanella loihica PV-4 riboflavin biosynthesis protein RibD YP_001093316.1 1379520 D 323850 CDS YP_001093317.1 127512120 4924142 1380687..1381352 1 NC_009092.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1381352 4924142 Shew_1188 Shewanella loihica PV-4 riboflavin synthase subunit alpha YP_001093317.1 1380687 D 323850 CDS YP_001093318.1 127512121 4920973 1381435..1382538 1 NC_009092.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: sdn:Sden_1146 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1382538 4920973 Shew_1189 Shewanella loihica PV-4 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001093318.1 1381435 D 323850 CDS YP_001093319.1 127512122 4921559 1382662..1383138 1 NC_009092.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1383138 ribH 4921559 ribH Shewanella loihica PV-4 6,7-dimethyl-8-ribityllumazine synthase YP_001093319.1 1382662 D 323850 CDS YP_001093320.1 127512123 4922150 1383153..1383557 1 NC_009092.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1383557 nusB 4922150 nusB Shewanella loihica PV-4 transcription antitermination protein NusB YP_001093320.1 1383153 D 323850 CDS YP_001093321.1 127512124 4922580 1383674..1384645 1 NC_009092.1 KEGG: she:Shewmr4_1101 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1384645 4922580 Shew_1192 Shewanella loihica PV-4 thiamine-monophosphate kinase YP_001093321.1 1383674 D 323850 CDS YP_001093322.1 127512125 4922936 1384648..1385142 1 NC_009092.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1385142 4922936 Shew_1193 Shewanella loihica PV-4 phosphatidylglycerophosphatase YP_001093322.1 1384648 D 323850 CDS YP_001093323.1 127512126 4922937 1385352..1385789 1 NC_009092.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sde:Sde_3850 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1385789 4922937 Shew_1194 Shewanella loihica PV-4 glutathione-dependent formaldehyde-activating protein YP_001093323.1 1385352 D 323850 CDS YP_001093324.1 127512127 4923535 complement(1385881..1387086) 1 NC_009092.1 KEGG: son:SO2460 hypothetical protein; hypothetical protein 1387086 4923535 Shew_1195 Shewanella loihica PV-4 hypothetical protein YP_001093324.1 1385881 R 323850 CDS YP_001093325.1 127512128 4921481 complement(1387289..1388950) 1 NC_009092.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein 1388950 4921481 Shew_1196 Shewanella loihica PV-4 recombination and repair protein YP_001093325.1 1387289 R 323850 CDS YP_001093326.1 127512129 4922453 complement(1389101..1390069) 1 NC_009092.1 PFAM: Auxin Efflux Carrier; KEGG: shm:Shewmr7_1171 auxin efflux carrier; auxin efflux carrier 1390069 4922453 Shew_1197 Shewanella loihica PV-4 auxin efflux carrier YP_001093326.1 1389101 R 323850 CDS YP_001093327.1 127512130 4922375 complement(1390167..1390361) 1 NC_009092.1 KEGG: sfr:Sfri_1045 hypothetical protein; hypothetical protein 1390361 4922375 Shew_1198 Shewanella loihica PV-4 hypothetical protein YP_001093327.1 1390167 R 323850 CDS YP_001093328.1 127512131 4924232 complement(1390365..1390967) 1 NC_009092.1 PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein; hypothetical protein 1390967 4924232 Shew_1199 Shewanella loihica PV-4 hypothetical protein YP_001093328.1 1390365 R 323850 CDS YP_001093329.1 127512132 4922232 complement(1390960..1393761) 1 NC_009092.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 1393761 4922232 Shew_1200 Shewanella loihica PV-4 hybrid sensory histidine kinase BarA YP_001093329.1 1390960 R 323850 CDS YP_001093330.1 127512133 4922039 1393859..1395193 1 NC_009092.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1395193 rumA 4922039 rumA Shewanella loihica PV-4 23S rRNA 5-methyluridine methyltransferase YP_001093330.1 1393859 D 323850 CDS YP_001093331.1 127512134 4922040 1395358..1397562 1 NC_009092.1 KEGG: shm:Shewmr7_1177 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1397562 4922040 Shew_1202 Shewanella loihica PV-4 (p)ppGpp synthetase I SpoT/RelA YP_001093331.1 1395358 D 323850 CDS YP_001093332.1 127512135 4923082 1397665..1398462 1 NC_009092.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1398462 mazG 4923082 mazG Shewanella loihica PV-4 nucleoside triphosphate pyrophosphohydrolase YP_001093332.1 1397665 D 323850 CDS YP_001093333.1 127512136 4922154 1398573..1400210 1 NC_009092.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1400210 pyrG 4922154 pyrG Shewanella loihica PV-4 CTP synthetase YP_001093333.1 1398573 D 323850 CDS YP_001093334.1 127512137 4921836 1400342..1401637 1 NC_009092.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1401637 eno 4921836 eno Shewanella loihica PV-4 phosphopyruvate hydratase YP_001093334.1 1400342 D 323850 CDS YP_001093335.1 127512138 4923806 1401737..1402039 1 NC_009092.1 PFAM: Septum formation initiator; KEGG: shm:Shewmr7_1187 septum formation initiator; septum formation initiator 1402039 4923806 Shew_1206 Shewanella loihica PV-4 septum formation initiator YP_001093335.1 1401737 D 323850 CDS YP_001093336.1 127512139 4921260 1402081..1402809 1 NC_009092.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1402809 ispD 4921260 ispD Shewanella loihica PV-4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001093336.1 1402081 D 323850 CDS YP_001093337.1 127512140 4922444 1402813..1403298 1 NC_009092.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1403298 ispF 4922444 ispF Shewanella loihica PV-4 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_001093337.1 1402813 D 323850 CDS YP_001093338.1 127512141 4923154 1403308..1404375 1 NC_009092.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: sfr:Sfri_1056 pseudouridylate synthase; pseudouridylate synthase 1404375 4923154 Shew_1209 Shewanella loihica PV-4 pseudouridylate synthase YP_001093338.1 1403308 D 323850 CDS YP_001093339.1 127512142 4923155 1404368..1405117 1 NC_009092.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1405117 surE 4923155 surE Shewanella loihica PV-4 stationary phase survival protein SurE YP_001093339.1 1404368 D 323850 CDS YP_001093340.1 127512143 4923530 1405099..1405749 1 NC_009092.1 KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1405749 4923530 Shew_1211 Shewanella loihica PV-4 protein-L-isoaspartate O-methyltransferase YP_001093340.1 1405099 D 323850 CDS YP_001093341.1 127512144 4922363 1405799..1406731 1 NC_009092.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: shm:Shewmr7_1193 peptidase M23B; peptidase M23B 1406731 4922363 Shew_1212 Shewanella loihica PV-4 peptidase M23B YP_001093341.1 1405799 D 323850 CDS YP_001093342.1 127512145 4921935 1406809..1407783 1 NC_009092.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: sdn:Sden_1204 RNA polymerase sigma factor RpoS; RpoD family RNA polymerase sigma factor 1407783 4921935 Shew_1213 Shewanella loihica PV-4 RpoD family RNA polymerase sigma factor YP_001093342.1 1406809 D 323850 CDS YP_001093343.1 127512146 4922773 complement(1408043..1410610) 1 NC_009092.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1410610 4922773 Shew_1214 Shewanella loihica PV-4 DNA mismatch repair protein MutS YP_001093343.1 1408043 R 323850 CDS YP_001093344.1 127512147 4922682 1410941..1412002 1 NC_009092.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1412002 recA 4922682 recA Shewanella loihica PV-4 recombinase A YP_001093344.1 1410941 D 323850 CDS YP_001093345.1 127512148 4923264 1412082..1412534 1 NC_009092.1 PFAM: regulatory protein RecX; KEGG: shm:Shewmr7_1197 regulatory protein RecX; regulatory protein RecX 1412534 4923264 Shew_1216 Shewanella loihica PV-4 regulatory protein RecX YP_001093345.1 1412082 D 323850 CDS YP_001093346.1 127512149 4922999 1412779..1415403 1 NC_009092.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1415403 alaS 4922999 alaS Shewanella loihica PV-4 alanyl-tRNA synthetase YP_001093346.1 1412779 D 323850 CDS YP_001093347.1 127512150 4923000 1415710..1415907 1 NC_009092.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1415907 4923000 Shew_1218 Shewanella loihica PV-4 carbon storage regulator YP_001093347.1 1415710 D 323850 CDS YP_001093348.1 127512151 4922705 1417286..1417534 1 NC_009092.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: sfr:Sfri_1065 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma 1417534 4922705 Shew_1219 Shewanella loihica PV-4 sodium pump decarboxylase subunit gamma YP_001093348.1 1417286 D 323850 CDS YP_001093349.1 127512152 4921314 1417554..1419359 1 NC_009092.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1419359 4921314 Shew_1220 Shewanella loihica PV-4 oxaloacetate decarboxylase YP_001093349.1 1417554 D 323850 CDS YP_001093350.1 127512153 4921224 1419368..1420501 1 NC_009092.1 KEGG: sfr:Sfri_1067 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 1420501 4921224 Shew_1221 Shewanella loihica PV-4 sodium ion-translocating decarboxylase subunit beta YP_001093350.1 1419368 D 323850 CDS YP_001093351.1 127512154 4923442 1420865..1421050 1 NC_009092.1 KEGG: vfi:VF1529 hypothetical protein; hypothetical protein 1421050 4923442 Shew_1222 Shewanella loihica PV-4 hypothetical protein YP_001093351.1 1420865 D 323850 CDS YP_001093352.1 127512155 4921808 complement(1421080..1421265) 1 NC_009092.1 KEGG: shm:Shewmr7_3066 hypothetical protein; hypothetical protein 1421265 4921808 Shew_1223 Shewanella loihica PV-4 hypothetical protein YP_001093352.1 1421080 R 323850 CDS YP_001093353.1 127512156 4924342 complement(1421398..1422648) 1 NC_009092.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3065 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1422648 4924342 Shew_1224 Shewanella loihica PV-4 sodium:dicarboxylate symporter YP_001093353.1 1421398 R 323850 CDS YP_001093354.1 127512157 4924331 1422926..1423348 1 NC_009092.1 KEGG: son:SO3561 hypothetical protein; hypothetical protein 1423348 4924331 Shew_1225 Shewanella loihica PV-4 hypothetical protein YP_001093354.1 1422926 D 323850 CDS YP_001093355.1 127512158 4924332 1423434..1426268 1 NC_009092.1 PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_2981 peptidase M16 domain protein; peptidase M16 domain-containing protein 1426268 4924332 Shew_1226 Shewanella loihica PV-4 peptidase M16 domain-containing protein YP_001093355.1 1423434 D 323850 CDS YP_001093356.1 127512159 4924320 1426467..1428038 1 NC_009092.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1428038 4924320 Shew_1227 Shewanella loihica PV-4 glutamate--cysteine ligase YP_001093356.1 1426467 D 323850 CDS YP_001093357.1 127512160 4922611 1428041..1428481 1 NC_009092.1 KEGG: shm:Shewmr7_3061 hypothetical protein; hypothetical protein 1428481 4922611 Shew_1228 Shewanella loihica PV-4 hypothetical protein YP_001093357.1 1428041 D 323850 CDS YP_001093358.1 127512161 4922437 1428580..1429197 1 NC_009092.1 KEGG: shm:Shewmr7_3060 hypothetical protein; hypothetical protein 1429197 4922437 Shew_1229 Shewanella loihica PV-4 hypothetical protein YP_001093358.1 1428580 D 323850 CDS YP_001093359.1 127512162 4921126 1429520..1430029 1 NC_009092.1 KEGG: ppr:PBPRA3574 hypothetical phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1430029 4921126 Shew_1230 Shewanella loihica PV-4 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001093359.1 1429520 D 323850 CDS YP_001093360.1 127512163 4923905 1430464..1431057 1 NC_009092.1 PFAM: sigma-70 region 2 domain protein; KEGG: she:Shewmr4_2972 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1431057 4923905 Shew_1231 Shewanella loihica PV-4 ECF subfamily RNA polymerase sigma-24 factor YP_001093360.1 1430464 D 323850 CDS YP_001093361.1 127512164 4924350 1431057..1431824 1 NC_009092.1 KEGG: sfr:Sfri_1079 hypothetical protein; hypothetical protein 1431824 4924350 Shew_1232 Shewanella loihica PV-4 hypothetical protein YP_001093361.1 1431057 D 323850 CDS YP_001093362.1 127512165 4922012 complement(1431875..1432366) 1 NC_009092.1 KEGG: pat:Patl_1076 hypothetical protein; hypothetical protein 1432366 4922012 Shew_1233 Shewanella loihica PV-4 hypothetical protein YP_001093362.1 1431875 R 323850 CDS YP_001093363.1 127512166 4922013 1432466..1435780 1 NC_009092.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: shm:Shewmr7_1214 peptidase S41; peptidase S41 1435780 4922013 Shew_1234 Shewanella loihica PV-4 peptidase S41 YP_001093363.1 1432466 D 323850 CDS YP_001093364.1 127512167 4921413 1435986..1436885 1 NC_009092.1 KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein 1436885 4921413 Shew_1235 Shewanella loihica PV-4 hypothetical protein YP_001093364.1 1435986 D 323850 CDS YP_001093365.1 127512168 4922975 complement(1436953..1437471) 1 NC_009092.1 PFAM: OsmC family protein; KEGG: sdn:Sden_1225 OsmC-like protein; OsmC family protein 1437471 4922975 Shew_1236 Shewanella loihica PV-4 OsmC family protein YP_001093365.1 1436953 R 323850 CDS YP_001093366.1 127512169 4924147 complement(1437563..1437841) 1 NC_009092.1 hypothetical protein 1437841 4924147 Shew_1237 Shewanella loihica PV-4 hypothetical protein YP_001093366.1 1437563 R 323850 CDS YP_001093367.1 127512170 4924026 complement(1437952..1438314) 1 NC_009092.1 KEGG: shm:Shewmr7_1217 hypothetical protein; hypothetical protein 1438314 4924026 Shew_1238 Shewanella loihica PV-4 hypothetical protein YP_001093367.1 1437952 R 323850 CDS YP_001093368.1 127512171 4923553 complement(1438311..1440023) 1 NC_009092.1 PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1218 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 1440023 4923553 Shew_1239 Shewanella loihica PV-4 PepSY-associated TM helix domain-containing protein YP_001093368.1 1438311 R 323850 CDS YP_001093369.1 127512172 4924368 complement(1440028..1440336) 1 NC_009092.1 KEGG: neu:NE1084 hypothetical protein; hypothetical protein 1440336 4924368 Shew_1240 Shewanella loihica PV-4 hypothetical protein YP_001093369.1 1440028 R 323850 CDS YP_001093370.1 127512173 4921512 1440748..1441104 1 NC_009092.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA 1441104 4921512 Shew_1241 Shewanella loihica PV-4 sigma 54 modulation protein/ribosomal protein S30EA YP_001093370.1 1440748 D 323850 CDS YP_001093371.1 127512174 4921513 complement(1441257..1441730) 1 NC_009092.1 KEGG: sdn:Sden_2617 hypothetical protein; hypothetical protein 1441730 4921513 Shew_1242 Shewanella loihica PV-4 hypothetical protein YP_001093371.1 1441257 R 323850 CDS YP_001093372.1 127512175 4921293 complement(1441813..1442898) 1 NC_009092.1 KEGG: sdn:Sden_2616 peptidyl-Lys metalloendopeptidase; peptidyl-Lys metalloendopeptidase 1442898 4921293 Shew_1243 Shewanella loihica PV-4 peptidyl-Lys metalloendopeptidase YP_001093372.1 1441813 R 323850 CDS YP_001093373.1 127512176 4923447 1443417..1443851 1 NC_009092.1 PFAM: OsmC family protein; KEGG: vfi:VFA0335 osmotically inducible protein C; OsmC family protein 1443851 4923447 Shew_1244 Shewanella loihica PV-4 OsmC family protein YP_001093373.1 1443417 D 323850 CDS YP_001093374.1 127512177 4923242 complement(1443918..1444859) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cyb:CYB_1948 transcriptional regulator, LysR family; LysR family transcriptional regulator 1444859 4923242 Shew_1245 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093374.1 1443918 R 323850 CDS YP_001093375.1 127512178 4923478 1444998..1445246 1 NC_009092.1 hypothetical protein 1445246 4923478 Shew_1246 Shewanella loihica PV-4 hypothetical protein YP_001093375.1 1444998 D 323850 CDS YP_001093376.1 127512179 4922635 1445248..1446180 1 NC_009092.1 PFAM: protein of unknown function DUF897; KEGG: ttj:TTHA0515 hypothetical protein; hypothetical protein 1446180 4922635 Shew_1247 Shewanella loihica PV-4 hypothetical protein YP_001093376.1 1445248 D 323850 CDS YP_001093377.1 127512180 4924285 1446190..1446672 1 NC_009092.1 KEGG: mmr:Mmar10_2567 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1446672 4924285 Shew_1248 Shewanella loihica PV-4 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001093377.1 1446190 D 323850 CDS YP_001093378.1 127512181 4923555 1446672..1447769 1 NC_009092.1 KEGG: hch:HCH_04604 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 1447769 4923555 Shew_1249 Shewanella loihica PV-4 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001093378.1 1446672 D 323850 CDS YP_001093379.1 127512182 4923556 complement(1448222..1448908) 1 NC_009092.1 hypothetical protein 1448908 4923556 Shew_1250 Shewanella loihica PV-4 hypothetical protein YP_001093379.1 1448222 R 323850 CDS YP_001093380.1 127512183 4924108 1449024..1450490 1 NC_009092.1 hypothetical protein 1450490 4924108 Shew_1251 Shewanella loihica PV-4 hypothetical protein YP_001093380.1 1449024 D 323850 CDS YP_001093381.1 127512184 4924025 1450808..1451473 1 NC_009092.1 KEGG: vfi:VFA0515 transposase; transposase 1451473 4924025 Shew_1252 Shewanella loihica PV-4 transposase YP_001093381.1 1450808 D 323850 CDS YP_001093382.1 127512185 4924071 complement(1451563..1452288) 1 NC_009092.1 KEGG: son:SO1447 retinol acyltransferase domain protein; retinol acyltransferase domain-containing protein 1452288 4924071 Shew_1253 Shewanella loihica PV-4 retinol acyltransferase domain-containing protein YP_001093382.1 1451563 R 323850 CDS YP_001093383.1 127512186 4924077 complement(1452361..1452921) 1 NC_009092.1 PFAM: phage integrase family protein; KEGG: she:Shewmr4_1694 phage integrase family protein; phage integrase family protein 1452921 4924077 Shew_1254 Shewanella loihica PV-4 phage integrase family protein YP_001093383.1 1452361 R 323850 CDS YP_001093384.1 127512187 4922654 complement(1453031..1453435) 1 NC_009092.1 KEGG: shm:Shewmr7_1772 hypothetical protein; hypothetical protein 1453435 4922654 Shew_1255 Shewanella loihica PV-4 hypothetical protein YP_001093384.1 1453031 R 323850 CDS YP_001093385.1 127512188 4920467 complement(1453515..1453877) 1 NC_009092.1 KEGG: she:Shewmr4_1698 hypothetical protein; hypothetical protein 1453877 4920467 Shew_1256 Shewanella loihica PV-4 hypothetical protein YP_001093385.1 1453515 R 323850 CDS YP_001093386.1 127512189 4923525 complement(1453953..1454426) 1 NC_009092.1 PFAM: DNA repair protein RadC; KEGG: son:SO1455 DNA repair protein, RadC family; DNA repair protein RadC 1454426 4923525 Shew_1257 Shewanella loihica PV-4 DNA repair protein RadC YP_001093386.1 1453953 R 323850 CDS YP_001093387.1 127512190 4923526 1454598..1454783 1 NC_009092.1 PFAM: Prophage CP4-57 regulatory; KEGG: ilo:IL0640 predicted transcriptional regulator; phage transcriptional regulator AlpA 1454783 4923526 Shew_1258 Shewanella loihica PV-4 phage transcriptional regulator AlpA YP_001093387.1 1454598 D 323850 CDS YP_001093388.1 127512191 4920561 1455068..1455226 1 NC_009092.1 PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0810 predicted transcriptional regulator; phage transcriptional regulator AlpA 1455226 4920561 Shew_1259 Shewanella loihica PV-4 phage transcriptional regulator AlpA YP_001093388.1 1455068 D 323850 CDS YP_001093389.1 127512192 4920584 1455597..1457756 1 NC_009092.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cgb:cg1028 putative restriction-modification system: methylase; DNA methylase N-4/N-6 domain-containing protein 1457756 4920584 Shew_1260 Shewanella loihica PV-4 DNA methylase N-4/N-6 domain-containing protein YP_001093389.1 1455597 D 323850 CDS YP_001093390.1 127512193 4920654 1457762..1460347 1 NC_009092.1 PFAM: type III restriction enzyme, res subunit; KEGG: ecj:JW0270 hypothetical protein; type III restriction enzyme, res subunit 1460347 4920654 Shew_1261 Shewanella loihica PV-4 type III restriction enzyme, res subunit YP_001093390.1 1457762 D 323850 CDS YP_001093391.1 127512194 4920699 complement(1460488..1460853) 1 NC_009092.1 hypothetical protein 1460853 4920699 Shew_1262 Shewanella loihica PV-4 hypothetical protein YP_001093391.1 1460488 R 323850 CDS YP_001093392.1 127512195 4920747 1461001..1461984 1 NC_009092.1 KEGG: sty:HCM1.102 hypothetical protein; hypothetical protein 1461984 4920747 Shew_1263 Shewanella loihica PV-4 hypothetical protein YP_001093392.1 1461001 D 323850 CDS YP_001093393.1 127512196 4920571 1461981..1464017 1 NC_009092.1 PFAM: UvrD/REP helicase; KEGG: sty:HCM1.103 putative DNA helicase; UvrD/REP helicase 1464017 4920571 Shew_1264 Shewanella loihica PV-4 UvrD/REP helicase YP_001093393.1 1461981 D 323850 CDS YP_001093394.1 127512197 4920581 complement(1464090..1464632) 1 NC_009092.1 hypothetical protein 1464632 4920581 Shew_1265 Shewanella loihica PV-4 hypothetical protein YP_001093394.1 1464090 R 323850 CDS YP_001093395.1 127512198 4920582 1464637..1465020 1 NC_009092.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1465020 4920582 Shew_1266 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001093395.1 1464637 D 323850 CDS YP_001093396.1 127512199 4920880 complement(1465559..1466788) 1 NC_009092.1 PFAM: phage integrase family protein; KEGG: she:Shewmr4_2777 phage integrase family protein; phage integrase family protein 1466788 4920880 Shew_1267 Shewanella loihica PV-4 phage integrase family protein YP_001093396.1 1465559 R 323850 CDS YP_001093397.1 127512200 4922706 complement(1467468..1467959) 1 NC_009092.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1467959 smpB 4922706 smpB Shewanella loihica PV-4 SsrA-binding protein YP_001093397.1 1467468 R 323850 CDS YP_001093398.1 127512201 4920520 1468162..1468593 1 NC_009092.1 PFAM: cyclase/dehydrase; KEGG: shm:Shewmr7_2853 cyclase/dehydrase; cyclase/dehydrase 1468593 4920520 Shew_1269 Shewanella loihica PV-4 cyclase/dehydrase YP_001093398.1 1468162 D 323850 CDS YP_001093399.1 127512202 4920510 1468622..1468954 1 NC_009092.1 PFAM: protein of unknown function UPF0125; KEGG: sfr:Sfri_1096 protein of unknown function UPF0125; hypothetical protein 1468954 4920510 Shew_1270 Shewanella loihica PV-4 hypothetical protein YP_001093399.1 1468622 D 323850 CDS YP_001093400.1 127512203 4920443 complement(1469162..1469710) 1 NC_009092.1 PFAM: SmpA/OmlA domain protein; KEGG: shm:Shewmr7_2851 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 1469710 4920443 Shew_1271 Shewanella loihica PV-4 SmpA/OmlA domain-containing protein YP_001093400.1 1469162 R 323850 CDS YP_001093401.1 127512204 4920437 1470059..1470868 1 NC_009092.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: she:Shewmr4_2772 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1470868 4920437 Shew_1272 Shewanella loihica PV-4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001093401.1 1470059 D 323850 CDS YP_001093402.1 127512205 4920501 1470952..1471173 1 NC_009092.1 KEGG: sfr:Sfri_1099 hypothetical protein; hypothetical protein 1471173 4920501 Shew_1273 Shewanella loihica PV-4 hypothetical protein YP_001093402.1 1470952 D 323850 CDS YP_001093403.1 127512206 4920502 1471188..1472969 1 NC_009092.1 KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1472969 4920502 Shew_1274 Shewanella loihica PV-4 diguanylate cyclase YP_001093403.1 1471188 D 323850 CDS YP_001093404.1 127512207 4920457 1474273..1475907 1 NC_009092.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1475907 4920457 Shew_1275 Shewanella loihica PV-4 malate synthase YP_001093404.1 1474273 D 323850 CDS YP_001093405.1 127512208 4920493 1475987..1477339 1 NC_009092.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: she:Shewmr4_2766 isocitrate lyase; isocitrate lyase 1477339 4920493 Shew_1276 Shewanella loihica PV-4 isocitrate lyase YP_001093405.1 1475987 D 323850 CDS YP_001093406.1 127512209 4920418 1477688..1479136 1 NC_009092.1 PFAM: GAF domain protein; HDOD; KEGG: sdn:Sden_1247 hypothetical protein; putative signal transduction protein 1479136 4920418 Shew_1277 Shewanella loihica PV-4 putative signal transduction protein YP_001093406.1 1477688 D 323850 CDS YP_001093407.1 127512210 4920552 complement(1479139..1479612) 1 NC_009092.1 KEGG: shm:Shewmr7_1280 hypothetical protein; hypothetical protein 1479612 4920552 Shew_1278 Shewanella loihica PV-4 hypothetical protein YP_001093407.1 1479139 R 323850 CDS YP_001093408.1 127512211 4920476 complement(1479636..1480460) 1 NC_009092.1 PFAM: protein of unknown function DUF980; KEGG: sfr:Sfri_1105 protein of unknown function DUF980; hypothetical protein 1480460 4920476 Shew_1279 Shewanella loihica PV-4 hypothetical protein YP_001093408.1 1479636 R 323850 CDS YP_001093409.1 127512212 4920474 complement(1480740..1481165) 1 NC_009092.1 KEGG: she:Shewmr4_1213 transcriptional regulator, CopG family; CopG family transcriptional regulator 1481165 4920474 Shew_1280 Shewanella loihica PV-4 CopG family transcriptional regulator YP_001093409.1 1480740 R 323850 CDS YP_001093410.1 127512213 4920470 complement(1481125..1481868) 1 NC_009092.1 KEGG: shm:Shewmr7_1285 hypothetical protein; hypothetical protein 1481868 4920470 Shew_1281 Shewanella loihica PV-4 hypothetical protein YP_001093410.1 1481125 R 323850 CDS YP_001093411.1 127512214 4920471 1482486..1482710 1 NC_009092.1 KEGG: shm:Shewmr7_1287 hypothetical protein; hypothetical protein 1482710 4920471 Shew_1282 Shewanella loihica PV-4 hypothetical protein YP_001093411.1 1482486 D 323850 CDS YP_001093412.1 127512215 4920461 1482838..1483140 1 NC_009092.1 KEGG: son:SO3325 NrfJ-related protein; NrfJ-related protein 1483140 4920461 Shew_1283 Shewanella loihica PV-4 NrfJ-related protein YP_001093412.1 1482838 D 323850 CDS YP_001093413.1 127512216 4920466 1483404..1483904 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1289 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1483904 4920466 Shew_1284 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093413.1 1483404 D 323850 CDS YP_001093414.1 127512217 4920532 complement(1484046..1485806) 1 NC_009092.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: she:Shewmr4_1223 metallophosphoesterase; 5'-nucleotidase 1485806 4920532 Shew_1285 Shewanella loihica PV-4 5'-nucleotidase YP_001093414.1 1484046 R 323850 CDS YP_001093415.1 127512218 4921639 complement(1485948..1487081) 1 NC_009092.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: shm:Shewmr7_1295 protein of unknown function DUF21; hypothetical protein 1487081 4921639 Shew_1286 Shewanella loihica PV-4 hypothetical protein YP_001093415.1 1485948 R 323850 CDS YP_001093416.1 127512219 4923180 1487227..1488348 1 NC_009092.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1488348 4923180 Shew_1287 Shewanella loihica PV-4 ribosomal RNA large subunit methyltransferase N YP_001093416.1 1487227 D 323850 CDS YP_001093417.1 127512220 4920545 1488381..1489169 1 NC_009092.1 KEGG: shm:Shewmr7_1297 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1489169 4920545 Shew_1288 Shewanella loihica PV-4 type IV pilus biogenesis/stability protein PilW YP_001093417.1 1488381 D 323850 CDS YP_001093418.1 127512221 4920547 1489169..1490179 1 NC_009092.1 KEGG: sfr:Sfri_1115 hypothetical protein; hypothetical protein 1490179 4920547 Shew_1289 Shewanella loihica PV-4 hypothetical protein YP_001093418.1 1489169 D 323850 CDS YP_001093419.1 127512222 4920548 1490199..1491314 1 NC_009092.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1491314 ispG 4920548 ispG Shewanella loihica PV-4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001093419.1 1490199 D 323850 CDS YP_001093420.1 127512223 4923678 1491468..1492739 1 NC_009092.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1492739 hisS 4923678 hisS Shewanella loihica PV-4 histidyl-tRNA synthetase YP_001093420.1 1491468 D 323850 CDS YP_001093421.1 127512224 4923911 1492754..1493377 1 NC_009092.1 PFAM: Tetratricopeptide TPR_4; KEGG: shm:Shewmr7_1301 hypothetical protein; hypothetical protein 1493377 4923911 Shew_1292 Shewanella loihica PV-4 hypothetical protein YP_001093421.1 1492754 D 323850 CDS YP_001093422.1 127512225 4920497 1493389..1494576 1 NC_009092.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1494576 4920497 Shew_1293 Shewanella loihica PV-4 outer membrane protein assembly complex subunit YfgL YP_001093422.1 1493389 D 323850 CDS YP_001093423.1 127512226 4920430 1494671..1496140 1 NC_009092.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1496140 engA 4920430 engA Shewanella loihica PV-4 GTP-binding protein EngA YP_001093423.1 1494671 D 323850 CDS YP_001093424.1 127512227 4924096 1496331..1496864 1 NC_009092.1 KEGG: vpa:VP2004 hypothetical protein; hypothetical protein 1496864 4924096 Shew_1295 Shewanella loihica PV-4 hypothetical protein YP_001093424.1 1496331 D 323850 CDS YP_001093425.1 127512228 4920612 complement(1497096..1498424) 1 NC_009092.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1498424 xseA 4920612 xseA Shewanella loihica PV-4 exodeoxyribonuclease VII large subunit YP_001093425.1 1497096 R 323850 CDS YP_001093426.1 127512229 4920422 1498544..1500010 1 NC_009092.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1500010 4920422 Shew_1297 Shewanella loihica PV-4 inosine 5'-monophosphate dehydrogenase YP_001093426.1 1498544 D 323850 CDS YP_001093427.1 127512230 4920423 1500113..1501690 1 NC_009092.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1501690 guaA 4920423 guaA Shewanella loihica PV-4 GMP synthase YP_001093427.1 1500113 D 323850 CDS YP_001093428.1 127512231 4920429 1501837..1502373 1 NC_009092.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: she:Shewmr4_1236 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1502373 4920429 Shew_1299 Shewanella loihica PV-4 zinc-binding CMP/dCMP deaminase YP_001093428.1 1501837 D 323850 CDS YP_001093429.1 127512232 4920419 complement(1502607..1504037) 1 NC_009092.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1504037 4920419 Shew_1300 Shewanella loihica PV-4 putative transglycosylase YP_001093429.1 1502607 R 323850 CDS YP_001093430.1 127512233 4920439 1504363..1508244 1 NC_009092.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1508244 4920439 Shew_1301 Shewanella loihica PV-4 phosphoribosylformylglycinamidine synthase YP_001093430.1 1504363 D 323850 CDS YP_001093431.1 127512234 4920445 1509487..1511043 1 NC_009092.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_1310 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase, subunit I 1511043 4920445 Shew_1302 Shewanella loihica PV-4 cytochrome bd ubiquinol oxidase, subunit I YP_001093431.1 1509487 D 323850 CDS YP_001093432.1 127512235 4920444 1511059..1512198 1 NC_009092.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 1512198 4920444 Shew_1303 Shewanella loihica PV-4 cytochrome d ubiquinol oxidase, subunit II YP_001093432.1 1511059 D 323850 CDS YP_001093433.1 127512236 4920450 1512213..1512329 1 NC_009092.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sfr:Sfri_1144 cyd operon protein YbgT; cyd operon protein YbgT 1512329 4920450 Shew_1304 Shewanella loihica PV-4 cyd operon protein YbgT YP_001093433.1 1512213 D 323850 CDS YP_001093434.1 127512237 4920458 1512902..1513342 1 NC_009092.1 PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 1513342 4920458 Shew_1305 Shewanella loihica PV-4 HNH endonuclease YP_001093434.1 1512902 D 323850 CDS YP_001093435.1 127512238 4920459 1513910..1514731 1 NC_009092.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: tma:TM1828 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; zinc-binding CMP/dCMP deaminase 1514731 4920459 Shew_1306 Shewanella loihica PV-4 zinc-binding CMP/dCMP deaminase YP_001093435.1 1513910 D 323850 CDS YP_001093436.1 127512239 4920451 1514848..1516023 1 NC_009092.1 hypothetical protein 1516023 4920451 Shew_1307 Shewanella loihica PV-4 hypothetical protein YP_001093436.1 1514848 D 323850 CDS YP_001093437.1 127512240 4920468 1516150..1517382 1 NC_009092.1 hypothetical protein 1517382 4920468 Shew_1308 Shewanella loihica PV-4 hypothetical protein YP_001093437.1 1516150 D 323850 CDS YP_001093438.1 127512241 4922707 complement(1518535..1520538) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1243 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1520538 4922707 Shew_1310 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001093438.1 1518535 R 323850 CDS YP_001093439.1 127512242 4920475 complement(1520737..1523808) 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: sdn:Sden_1277 acriflavin resistance protein; acriflavin resistance protein 1523808 4920475 Shew_1311 Shewanella loihica PV-4 acriflavin resistance protein YP_001093439.1 1520737 R 323850 CDS YP_001093440.1 127512243 4920479 complement(1523812..1524927) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit 1524927 4920479 Shew_1312 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001093440.1 1523812 R 323850 CDS YP_001093441.1 127512244 4920485 1525070..1525681 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: sdn:Sden_1279 regulatory protein, TetR; TetR family transcriptional regulator 1525681 4920485 Shew_1313 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001093441.1 1525070 D 323850 CDS YP_001093442.1 127512245 4920487 1525895..1526809 1 NC_009092.1 KEGG: sfr:Sfri_1150 hypothetical protein; hypothetical protein 1526809 4920487 Shew_1314 Shewanella loihica PV-4 hypothetical protein YP_001093442.1 1525895 D 323850 CDS YP_001093443.1 127512246 4920488 complement(1526949..1527521) 1 NC_009092.1 KEGG: shm:Shewmr7_1319 hypothetical protein; hypothetical protein 1527521 4920488 Shew_1315 Shewanella loihica PV-4 hypothetical protein YP_001093443.1 1526949 R 323850 CDS YP_001093444.1 127512247 4920481 complement(1527554..1528033) 1 NC_009092.1 KEGG: sdn:Sden_1282 hypothetical protein; hypothetical protein 1528033 4920481 Shew_1316 Shewanella loihica PV-4 hypothetical protein YP_001093444.1 1527554 R 323850 CDS YP_001093445.1 127512248 4920495 complement(1528142..1530622) 1 NC_009092.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sdn:Sden_1285 protein of unknown function DUF115; hypothetical protein 1530622 4920495 Shew_1317 Shewanella loihica PV-4 hypothetical protein YP_001093445.1 1528142 R 323850 CDS YP_001093446.1 127512249 4920500 1531054..1532052 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD 1532052 4920500 Shew_1318 Shewanella loihica PV-4 polysaccharide biosynthesis protein CapD YP_001093446.1 1531054 D 323850 CDS YP_001093447.1 127512250 4920505 1532052..1533218 1 NC_009092.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sdn:Sden_1287 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1533218 4920505 Shew_1319 Shewanella loihica PV-4 DegT/DnrJ/EryC1/StrS aminotransferase YP_001093447.1 1532052 D 323850 CDS YP_001093448.1 127512251 4920514 complement(1533202..1534407) 1 NC_009092.1 PFAM: Methyltransferase type 12; KEGG: sdn:Sden_3104 methyltransferase type 12; type 12 methyltransferase 1534407 4920514 Shew_1320 Shewanella loihica PV-4 type 12 methyltransferase YP_001093448.1 1533202 R 323850 CDS YP_001093449.1 127512252 4920503 complement(1534408..1535598) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_3105 methyltransferase type 12; type 12 methyltransferase 1535598 4920503 Shew_1321 Shewanella loihica PV-4 type 12 methyltransferase YP_001093449.1 1534408 R 323850 CDS YP_001093450.1 127512253 4920523 complement(1535609..1536337) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sdn:Sden_3106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1536337 4920523 Shew_1322 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001093450.1 1535609 R 323850 CDS YP_001093451.1 127512254 4920524 complement(1536337..1537479) 1 NC_009092.1 KEGG: sdn:Sden_3107 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein; acyl-CoA synthetase/AMP-acid ligase 1537479 4920524 Shew_1323 Shewanella loihica PV-4 acyl-CoA synthetase/AMP-acid ligase YP_001093451.1 1536337 R 323850 CDS YP_001093452.1 127512255 4920527 complement(1537479..1537724) 1 NC_009092.1 KEGG: sdn:Sden_3108 hypothetical protein; hypothetical protein 1537724 4920527 Shew_1324 Shewanella loihica PV-4 hypothetical protein YP_001093452.1 1537479 R 323850 CDS YP_001093453.1 127512256 4920511 complement(1537721..1538287) 1 NC_009092.1 KEGG: sdn:Sden_3109 acetyltransferases including N-acetylases of ribosomal proteins-like protein; acetyltransferase-like protein 1538287 4920511 Shew_1325 Shewanella loihica PV-4 acetyltransferase-like protein YP_001093453.1 1537721 R 323850 CDS YP_001093454.1 127512257 4920535 complement(1538297..1539058) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sdn:Sden_3110 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1539058 4920535 Shew_1326 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001093454.1 1538297 R 323850 CDS YP_001093455.1 127512258 4920543 complement(1539077..1539310) 1 NC_009092.1 KEGG: sdn:Sden_3111 hypothetical protein; hypothetical protein 1539310 4920543 Shew_1327 Shewanella loihica PV-4 hypothetical protein YP_001093455.1 1539077 R 323850 CDS YP_001093456.1 127512259 4920551 complement(1539395..1540132) 1 NC_009092.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: sdn:Sden_3112 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 1540132 4920551 Shew_1328 Shewanella loihica PV-4 acylneuraminate cytidylyltransferase YP_001093456.1 1539395 R 323850 CDS YP_001093457.1 127512260 4920533 complement(1540133..1541209) 1 NC_009092.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: sdn:Sden_3113 N-acetylneuraminic acid synthase-like protein; N-acylneuraminate-9-phosphate synthase 1541209 4920533 Shew_1329 Shewanella loihica PV-4 N-acylneuraminate-9-phosphate synthase YP_001093457.1 1540133 R 323850 CDS YP_001093458.1 127512261 4922572 complement(1541211..1542320) 1 NC_009092.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sdn:Sden_3114 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 1542320 4922572 Shew_1330 Shewanella loihica PV-4 Rieske (2Fe-2S) domain-containing protein YP_001093458.1 1541211 R 323850 CDS YP_001093459.1 127512262 4922573 complement(1542317..1543387) 1 NC_009092.1 KEGG: sdn:Sden_3115 spore coat polysaccharide biosynthesis protein predicted glycosyltransferase-like protein; spore coat polysaccharide biosynthesis protein glycosyltransferase-like 1543387 4922573 Shew_1331 Shewanella loihica PV-4 spore coat polysaccharide biosynthesis protein glycosyltransferase-like YP_001093459.1 1542317 R 323850 CDS YP_001093460.1 127512263 4924138 complement(1543365..1544117) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sdn:Sden_3118 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1544117 4924138 Shew_1332 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001093460.1 1543365 R 323850 CDS YP_001093461.1 127512264 4923709 complement(1544117..1545208) 1 NC_009092.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sdn:Sden_3119 3-oxoacyl-(acyl-carrier protein) synthase; 3-oxoacyl-ACP synthase 1545208 4923709 Shew_1333 Shewanella loihica PV-4 3-oxoacyl-ACP synthase YP_001093461.1 1544117 R 323850 CDS YP_001093462.1 127512265 4923853 1545341..1546363 1 NC_009092.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sdn:Sden_3120 3-oxoacyl-(acyl-carrier protein) synthase; 3-oxoacyl-ACP synthase 1546363 4923853 Shew_1334 Shewanella loihica PV-4 3-oxoacyl-ACP synthase YP_001093462.1 1545341 D 323850 CDS YP_001093463.1 127512266 4924111 complement(1546346..1546609) 1 NC_009092.1 KEGG: son:SO3260 hypothetical protein; hypothetical protein 1546609 4924111 Shew_1335 Shewanella loihica PV-4 hypothetical protein YP_001093463.1 1546346 R 323850 CDS YP_001093464.1 127512267 4924386 complement(1546606..1547901) 1 NC_009092.1 KEGG: son:SO3259 hypothetical protein; hypothetical protein 1547901 4924386 Shew_1336 Shewanella loihica PV-4 hypothetical protein YP_001093464.1 1546606 R 323850 CDS YP_001093465.1 127512268 4922708 complement(1548104..1549264) 1 NC_009092.1 KEGG: shm:Shewmr7_1321 hypothetical protein; hypothetical protein 1549264 4922708 Shew_1337 Shewanella loihica PV-4 hypothetical protein YP_001093465.1 1548104 R 323850 CDS YP_001093466.1 127512269 4923776 1549666..1550292 1 NC_009092.1 KEGG: shm:Shewmr7_1322 hypothetical protein; hypothetical protein 1550292 4923776 Shew_1338 Shewanella loihica PV-4 hypothetical protein YP_001093466.1 1549666 D 323850 CDS YP_001093467.1 127512270 4923777 1550289..1550735 1 NC_009092.1 PFAM: protein of unknown function DUF400; KEGG: shm:Shewmr7_1323 protein of unknown function DUF400; hypothetical protein 1550735 4923777 Shew_1339 Shewanella loihica PV-4 hypothetical protein YP_001093467.1 1550289 D 323850 CDS YP_001093468.1 127512271 4920525 complement(1550814..1551239) 1 NC_009092.1 PFAM: FlgN family protein; KEGG: shm:Shewmr7_1324 FlgN family protein; FlgN family protein 1551239 4920525 Shew_1340 Shewanella loihica PV-4 FlgN family protein YP_001093468.1 1550814 R 323850 CDS YP_001093469.1 127512272 4920452 complement(1551250..1551567) 1 NC_009092.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: sfr:Sfri_1157 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 1551567 4920452 Shew_1341 Shewanella loihica PV-4 anti-sigma-28 factor FlgM YP_001093469.1 1551250 R 323850 CDS YP_001093470.1 127512273 4920427 complement(1551688..1552395) 1 NC_009092.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1552395 flgA 4920427 flgA Shewanella loihica PV-4 flagellar basal body P-ring biosynthesis protein FlgA YP_001093470.1 1551688 R 323850 CDS YP_001093471.1 127512274 4920486 1552605..1553525 1 NC_009092.1 PFAM: response regulator receiver; CheW domain protein; KEGG: she:Shewmr4_1257 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1553525 4920486 Shew_1343 Shewanella loihica PV-4 response regulator receiver modulated CheW protein YP_001093471.1 1552605 D 323850 CDS YP_001093472.1 127512275 4920492 1553669..1554502 1 NC_009092.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: shm:Shewmr7_1328 MCP methyltransferase, CheR-type; chemotaxis protein CheR 1554502 4920492 Shew_1344 Shewanella loihica PV-4 chemotaxis protein CheR YP_001093472.1 1553669 D 323850 CDS YP_001093473.1 127512276 4923549 1554691..1555089 1 NC_009092.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1555089 flgB 4923549 flgB Shewanella loihica PV-4 flagellar basal body rod protein FlgB YP_001093473.1 1554691 D 323850 CDS YP_001093474.1 127512277 4920518 1555092..1555511 1 NC_009092.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1555511 flgC 4920518 flgC Shewanella loihica PV-4 flagellar basal body rod protein FlgC YP_001093474.1 1555092 D 323850 CDS YP_001093475.1 127512278 4920519 1555522..1556304 1 NC_009092.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1556304 flgD 4920519 flgD Shewanella loihica PV-4 flagellar basal body rod modification protein YP_001093475.1 1555522 D 323850 CDS YP_001093476.1 127512279 4921511 1556368..1557729 1 NC_009092.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1557729 flgE 4921511 flgE Shewanella loihica PV-4 flagellar hook protein FlgE YP_001093476.1 1556368 D 323850 CDS YP_001093477.1 127512280 4924143 1557929..1558672 1 NC_009092.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1558672 flgF 4924143 flgF Shewanella loihica PV-4 flagellar basal body rod protein FlgF YP_001093477.1 1557929 D 323850 CDS YP_001093478.1 127512281 4921407 1558683..1559471 1 NC_009092.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1559471 flgG 4921407 flgG Shewanella loihica PV-4 flagellar basal body rod protein FlgG YP_001093478.1 1558683 D 323850 CDS YP_001093479.1 127512282 4924251 1559481..1560185 1 NC_009092.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1560185 flgH 4924251 flgH Shewanella loihica PV-4 flagellar basal body L-ring protein YP_001093479.1 1559481 D 323850 CDS YP_001093480.1 127512283 4922527 1560197..1561288 1 NC_009092.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1561288 flgI 4922527 flgI Shewanella loihica PV-4 flagellar basal body P-ring protein YP_001093480.1 1560197 D 323850 CDS YP_001093481.1 127512284 4923608 1561336..1562361 1 NC_009092.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1562361 flgJ 4923608 flgJ Shewanella loihica PV-4 flagellar rod assembly protein/muramidase FlgJ YP_001093481.1 1561336 D 323850 CDS YP_001093482.1 127512285 4923881 1562426..1564342 1 NC_009092.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shm:Shewmr7_1338 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1564342 4923881 Shew_1354 Shewanella loihica PV-4 flagellar hook-associated protein FlgK YP_001093482.1 1562426 D 323850 CDS YP_001093483.1 127512286 4923882 1564354..1565544 1 NC_009092.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1565544 flgL 4923882 flgL Shewanella loihica PV-4 flagellar hook-associated protein FlgL YP_001093483.1 1564354 D 323850 CDS YP_001093484.1 127512287 4922526 1565632..1566453 1 NC_009092.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein 1566453 4922526 Shew_1356 Shewanella loihica PV-4 flagellin domain-containing protein YP_001093484.1 1565632 D 323850 CDS YP_001093485.1 127512288 4923190 1566690..1567508 1 NC_009092.1 PFAM: flagellin domain protein; KEGG: sdn:Sden_1315 flagellin-like protein; flagellin domain-containing protein 1567508 4923190 Shew_1357 Shewanella loihica PV-4 flagellin domain-containing protein YP_001093485.1 1566690 D 323850 CDS YP_001093486.1 127512289 4922436 1567613..1568002 1 NC_009092.1 PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1568002 4922436 Shew_1358 Shewanella loihica PV-4 flagellar protein FlaG protein YP_001093486.1 1567613 D 323850 CDS YP_001093487.1 127512290 4922204 1568033..1569406 1 NC_009092.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1569406 4922204 Shew_1359 Shewanella loihica PV-4 flagellar hook-associated 2 domain-containing protein YP_001093487.1 1568033 D 323850 CDS YP_001093488.1 127512291 4921971 1569434..1569754 1 NC_009092.1 KEGG: sdn:Sden_1318 hypothetical protein; hypothetical protein 1569754 4921971 Shew_1360 Shewanella loihica PV-4 hypothetical protein YP_001093488.1 1569434 D 323850 CDS YP_001093489.1 127512292 4921868 1569761..1570171 1 NC_009092.1 flagellin specific chaperone; flagellar protein FliS 1570171 fliS 4921868 fliS Shewanella loihica PV-4 flagellar protein FliS YP_001093489.1 1569761 D 323850 CDS YP_001093490.1 127512293 4921809 1570438..1571871 1 NC_009092.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: she:Shewmr4_1278 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1571871 4921809 Shew_1362 Shewanella loihica PV-4 sigma-54 dependent trancsriptional regulator YP_001093490.1 1570438 D 323850 CDS YP_001093491.1 127512294 4921810 1572027..1573115 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: she:Shewmr4_1279 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 1573115 4921810 Shew_1363 Shewanella loihica PV-4 PAS/PAC sensor signal transduction histidine kinase YP_001093491.1 1572027 D 323850 CDS YP_001093492.1 127512295 4921039 1573108..1574451 1 NC_009092.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_1180 two component, sigma54 specific, transcriptional regulator, fis family protein; two component, sigma54 specific, Fis family transcriptional regulator 1574451 4921039 Shew_1364 Shewanella loihica PV-4 two component, sigma54 specific, Fis family transcriptional regulator YP_001093492.1 1573108 D 323850 CDS YP_001093493.1 127512296 4924144 1574648..1574980 1 NC_009092.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: shm:Shewmr7_1348 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 1574980 4924144 Shew_1365 Shewanella loihica PV-4 flagellar hook-basal body complex subunit FliE YP_001093493.1 1574648 D 323850 CDS YP_001093494.1 127512297 4922703 1575039..1576736 1 NC_009092.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1576736 fliF 4922703 fliF Shewanella loihica PV-4 flagellar MS-ring protein YP_001093494.1 1575039 D 323850 CDS YP_001093495.1 127512298 4924004 1576729..1577772 1 NC_009092.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1577772 fliG 4924004 fliG Shewanella loihica PV-4 flagellar motor switch protein G YP_001093495.1 1576729 D 323850 CDS YP_001093496.1 127512299 4924149 1577772..1578791 1 NC_009092.1 PFAM: flagellar assembly protein FliH; KEGG: shm:Shewmr7_1351 flagellar assembly protein FliH; flagellar assembly protein FliH 1578791 4924149 Shew_1368 Shewanella loihica PV-4 flagellar assembly protein FliH YP_001093496.1 1577772 D 323850 CDS YP_001093497.1 127512300 4922147 1578763..1580103 1 NC_009092.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1580103 fliI 4922147 fliI Shewanella loihica PV-4 flagellum-specific ATP synthase YP_001093497.1 1578763 D 323850 CDS YP_001093498.1 127512301 4923152 1580133..1580579 1 NC_009092.1 TIGRFAM: flagellar export protein FliJ; KEGG: shm:Shewmr7_1353 flagellar export protein FliJ; flagellar export protein FliJ 1580579 4923152 Shew_1370 Shewanella loihica PV-4 flagellar export protein FliJ YP_001093498.1 1580133 D 323850 CDS YP_001093499.1 127512302 4923153 1580960..1582666 1 NC_009092.1 PFAM: flagellar hook-length control protein; KEGG: sfr:Sfri_1187 flagellar hook-length control protein; flagellar hook-length control protein 1582666 4923153 Shew_1371 Shewanella loihica PV-4 flagellar hook-length control protein YP_001093499.1 1580960 D 323850 CDS YP_001093500.1 127512303 4924131 1582766..1583287 1 NC_009092.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1583287 fliL 4924131 fliL Shewanella loihica PV-4 flagellar basal body-associated protein FliL YP_001093500.1 1582766 D 323850 CDS YP_001093501.1 127512304 4921812 1583330..1584355 1 NC_009092.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1584355 fliM 4921812 fliM Shewanella loihica PV-4 flagellar motor switch protein FliM YP_001093501.1 1583330 D 323850 CDS YP_001093502.1 127512305 4921828 1584381..1584764 1 NC_009092.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1584764 fliN 4921828 fliN Shewanella loihica PV-4 flagellar motor switch protein YP_001093502.1 1584381 D 323850 CDS YP_001093503.1 127512306 4921922 1584774..1585151 1 NC_009092.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: sfr:Sfri_1191 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 1585151 4921922 Shew_1375 Shewanella loihica PV-4 flagellar biosynthesis protein, FliO YP_001093503.1 1584774 D 323850 CDS YP_001093504.1 127512307 4922266 1585148..1585915 1 NC_009092.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1585915 fliP 4922266 fliP Shewanella loihica PV-4 flagellar biosynthesis protein FliP YP_001093504.1 1585148 D 323850 CDS YP_001093505.1 127512308 4922834 1585924..1586193 1 NC_009092.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: sdn:Sden_1337 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1586193 4922834 Shew_1377 Shewanella loihica PV-4 flagellar biosynthetic protein FliQ YP_001093505.1 1585924 D 323850 CDS YP_001093506.1 127512309 4922893 1586236..1587033 1 NC_009092.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1587033 fliR 4922893 fliR Shewanella loihica PV-4 flagellar biosynthesis protein FliR YP_001093506.1 1586236 D 323850 CDS YP_001093507.1 127512310 4922894 1587033..1588166 1 NC_009092.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1588166 flhB 4922894 flhB Shewanella loihica PV-4 flagellar biosynthesis protein FlhB YP_001093507.1 1587033 D 323850 CDS YP_001093508.1 127512311 4923611 1588319..1590418 1 NC_009092.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1590418 flhA 4923611 flhA Shewanella loihica PV-4 flagellar biosynthesis protein FlhA YP_001093508.1 1588319 D 323850 CDS YP_001093509.1 127512312 4920435 1590430..1591854 1 NC_009092.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1591854 flhF 4920435 flhF Shewanella loihica PV-4 flagellar biosynthesis regulator FlhF YP_001093509.1 1590430 D 323850 CDS YP_001093510.1 127512313 4922435 1591829..1592740 1 NC_009092.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1592740 4922435 Shew_1382 Shewanella loihica PV-4 cobyrinic acid a,c-diamide synthase YP_001093510.1 1591829 D 323850 CDS YP_001093511.1 127512314 4922517 1592733..1593452 1 NC_009092.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1593452 fliA 4922517 fliA Shewanella loihica PV-4 flagellar biosynthesis sigma factor YP_001093511.1 1592733 D 323850 CDS YP_001093512.1 127512315 4922897 1593495..1593878 1 NC_009092.1 PFAM: response regulator receiver; KEGG: shm:Shewmr7_1367 response regulator receiver protein; response regulator receiver protein 1593878 4922897 Shew_1384 Shewanella loihica PV-4 response regulator receiver protein YP_001093512.1 1593495 D 323850 CDS YP_001093513.1 127512316 4921811 1593892..1594629 1 NC_009092.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: sfr:Sfri_1201 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 1594629 4921811 Shew_1385 Shewanella loihica PV-4 chemotaxis phosphatase, CheZ YP_001093513.1 1593892 D 323850 CDS YP_001093514.1 127512317 4923671 1594645..1596885 1 NC_009092.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: shm:Shewmr7_1369 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 1596885 4923671 Shew_1386 Shewanella loihica PV-4 CheA signal transduction histidine kinase YP_001093514.1 1594645 D 323850 CDS YP_001093515.1 127512318 4923672 1596979..1598088 1 NC_009092.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1598088 4923672 Shew_1387 Shewanella loihica PV-4 chemotaxis-specific methylesterase YP_001093515.1 1596979 D 323850 CDS YP_001093516.1 127512319 4922636 1598081..1598704 1 NC_009092.1 KEGG: shm:Shewmr7_1371 hypothetical protein; hypothetical protein 1598704 4922636 Shew_1388 Shewanella loihica PV-4 hypothetical protein YP_001093516.1 1598081 D 323850 CDS YP_001093517.1 127512320 4922574 1598751..1599542 1 NC_009092.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1372 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1599542 4922574 Shew_1389 Shewanella loihica PV-4 cobyrinic acid a,c-diamide synthase YP_001093517.1 1598751 D 323850 CDS YP_001093518.1 127512321 4922798 1599526..1600515 1 NC_009092.1 PFAM: CheW domain protein; KEGG: shm:Shewmr7_1373 CheW protein; CheW protein 1600515 4922798 Shew_1390 Shewanella loihica PV-4 CheW protein YP_001093518.1 1599526 D 323850 CDS YP_001093519.1 127512322 4921167 1600523..1601017 1 NC_009092.1 PFAM: CheW domain protein; KEGG: shm:Shewmr7_1374 CheW protein; CheW protein 1601017 4921167 Shew_1391 Shewanella loihica PV-4 CheW protein YP_001093519.1 1600523 D 323850 CDS YP_001093520.1 127512323 4922059 1601149..1601556 1 NC_009092.1 KEGG: shm:Shewmr7_1375 hypothetical protein; hypothetical protein 1601556 4922059 Shew_1392 Shewanella loihica PV-4 hypothetical protein YP_001093520.1 1601149 D 323850 CDS YP_001093521.1 127512324 4922014 complement(1601587..1601943) 1 NC_009092.1 KEGG: shm:Shewmr7_1376 FlhB domain protein; FlhB domain-containing protein 1601943 4922014 Shew_1393 Shewanella loihica PV-4 FlhB domain-containing protein YP_001093521.1 1601587 R 323850 CDS YP_001093522.1 127512325 4921961 complement(1601943..1604096) 1 NC_009092.1 KEGG: she:Shewmr4_1310 hypothetical protein; hypothetical protein 1604096 4921961 Shew_1394 Shewanella loihica PV-4 hypothetical protein YP_001093522.1 1601943 R 323850 CDS YP_001093523.1 127512326 4921962 1604284..1605066 1 NC_009092.1 PFAM: VacJ family lipoprotein; KEGG: shm:Shewmr7_1378 VacJ family lipoprotein; VacJ family lipoprotein 1605066 4921962 Shew_1395 Shewanella loihica PV-4 VacJ family lipoprotein YP_001093523.1 1604284 D 323850 CDS YP_001093524.1 127512327 4921274 1605197..1606300 1 NC_009092.1 PFAM: response regulator receiver; KEGG: son:SO3196 response regulator; response regulator receiver protein 1606300 4921274 Shew_1396 Shewanella loihica PV-4 response regulator receiver protein YP_001093524.1 1605197 D 323850 CDS YP_001093525.1 127512328 4923809 complement(1606406..1607875) 1 NC_009092.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1380 amino acid/peptide transporter; amino acid/peptide transporter 1607875 4923809 Shew_1397 Shewanella loihica PV-4 amino acid/peptide transporter YP_001093525.1 1606406 R 323850 CDS YP_001093526.1 127512329 4921560 1608453..1608980 1 NC_009092.1 KEGG: sfr:Sfri_2844 NusG antitermination factor; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor 1608980 4921560 Shew_1398 Shewanella loihica PV-4 NusG antitermination factor YP_001093526.1 1608453 D 323850 CDS YP_001093527.1 127512330 4921441 1609752..1612514 1 NC_009092.1 PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein 1612514 4921441 Shew_1399 Shewanella loihica PV-4 polysaccharide export protein YP_001093527.1 1609752 D 323850 CDS YP_001093528.1 127512331 4923834 1612600..1613574 1 NC_009092.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis protein 1613574 4923834 Shew_1400 Shewanella loihica PV-4 lipopolysaccharide biosynthesis protein YP_001093528.1 1612600 D 323850 CDS YP_001093529.1 127512332 4923540 1613792..1614889 1 NC_009092.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1614889 4923540 Shew_1401 Shewanella loihica PV-4 dTDP-glucose-4,6-dehydratase YP_001093529.1 1613792 D 323850 CDS YP_001093530.1 127512333 4923174 1614889..1615764 1 NC_009092.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2829 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1615764 4923174 Shew_1402 Shewanella loihica PV-4 glucose-1-phosphate thymidylyltransferase YP_001093530.1 1614889 D 323850 CDS YP_001093531.1 127512334 4923175 1615774..1616640 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sdn:Sden_2661 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1616640 4923175 Shew_1403 Shewanella loihica PV-4 dTDP-4-dehydrorhamnose reductase YP_001093531.1 1615774 D 323850 CDS YP_001093532.1 127512335 4922427 1616643..1617188 1 NC_009092.1 KEGG: sfr:Sfri_2827 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1617188 4922427 Shew_1404 Shewanella loihica PV-4 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001093532.1 1616643 D 323850 CDS YP_001093533.1 127512336 4921415 1617188..1618246 1 NC_009092.1 PFAM: glycosyl transferase, group 1; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1; group 1 glycosyl transferase 1618246 4921415 Shew_1405 Shewanella loihica PV-4 group 1 glycosyl transferase YP_001093533.1 1617188 D 323850 CDS YP_001093534.1 127512337 4922976 1618274..1619782 1 NC_009092.1 PFAM: polysaccharide biosynthesis protein; KEGG: bfs:BF2791 putative transmembrane protein; polysaccharide biosynthesis protein 1619782 4922976 Shew_1406 Shewanella loihica PV-4 polysaccharide biosynthesis protein YP_001093534.1 1618274 D 323850 CDS YP_001093535.1 127512338 4921267 1619923..1620663 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: blo:BL0232 probable 3-oxoacyl-[acyl-carrier protein] reductase; short-chain dehydrogenase/reductase SDR 1620663 4921267 Shew_1407 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001093535.1 1619923 D 323850 CDS YP_001093536.1 127512339 4922801 1620695..1622437 1 NC_009092.1 PFAM: thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: blo:BL0231 2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; thiamine pyrophosphate binding domain-containing protein 1622437 4922801 Shew_1408 Shewanella loihica PV-4 thiamine pyrophosphate binding domain-containing protein YP_001093536.1 1620695 D 323850 CDS YP_001093537.1 127512340 4923241 1622440..1623570 1 NC_009092.1 KEGG: bfs:BF2794 hypothetical protein; hypothetical protein 1623570 4923241 Shew_1409 Shewanella loihica PV-4 hypothetical protein YP_001093537.1 1622440 D 323850 CDS YP_001093538.1 127512341 4923267 1623567..1624721 1 NC_009092.1 PFAM: glycosyl transferase, group 1; KEGG: sat:SYN_00823 glycosyltransferase; group 1 glycosyl transferase 1624721 4923267 Shew_1410 Shewanella loihica PV-4 group 1 glycosyl transferase YP_001093538.1 1623567 D 323850 CDS YP_001093539.1 127512342 4923268 1624733..1625311 1 NC_009092.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pfl:PFL_5101 O-acetyltransferase, putative; hexapaptide repeat-containing transferase 1625311 4923268 Shew_1411 Shewanella loihica PV-4 hexapaptide repeat-containing transferase YP_001093539.1 1624733 D 323850 CDS YP_001093540.1 127512343 4923466 1625289..1626407 1 NC_009092.1 KEGG: ter:Tery_3239 tetratricopeptide TPR_2; hypothetical protein 1626407 4923466 Shew_1412 Shewanella loihica PV-4 hypothetical protein YP_001093540.1 1625289 D 323850 CDS YP_001093541.1 127512344 4920822 1626400..1627377 1 NC_009092.1 hypothetical protein 1627377 4920822 Shew_1413 Shewanella loihica PV-4 hypothetical protein YP_001093541.1 1626400 D 323850 CDS YP_001093542.1 127512345 4921209 1627377..1628186 1 NC_009092.1 PFAM: glycosyl transferase, family 2; KEGG: bfs:BF1562 putative glycosyltransferase O-antigen related protein; glycosyl transferase family protein 1628186 4921209 Shew_1414 Shewanella loihica PV-4 glycosyl transferase family protein YP_001093542.1 1627377 D 323850 CDS YP_001093543.1 127512346 4922709 1629679..1630746 1 NC_009092.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: sfr:Sfri_2825 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1630746 4922709 Shew_1416 Shewanella loihica PV-4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_001093543.1 1629679 D 323850 CDS YP_001093544.1 127512347 4921488 1630900..1631943 1 NC_009092.1 TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: shm:Shewmr7_1397 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 1631943 4921488 Shew_1417 Shewanella loihica PV-4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_001093544.1 1630900 D 323850 CDS YP_001093545.1 127512348 4922035 1631972..1632892 1 NC_009092.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2823 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase GalU 1632892 4922035 Shew_1418 Shewanella loihica PV-4 UTP-glucose-1-phosphate uridylyltransferase GalU YP_001093545.1 1631972 D 323850 CDS YP_001093546.1 127512349 4922710 1634084..1634827 1 NC_009092.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfr:Sfri_3709 PHP C-terminal domain protein; putative hydrolase 1634827 4922710 Shew_1420 Shewanella loihica PV-4 putative hydrolase YP_001093546.1 1634084 D 323850 CDS YP_001093547.1 127512350 4922415 1635111..1635779 1 NC_009092.1 hypothetical protein 1635779 4922415 Shew_1421 Shewanella loihica PV-4 hypothetical protein YP_001093547.1 1635111 D 323850 CDS YP_001093548.1 127512351 4923674 1636162..1637067 1 NC_009092.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1637067 4923674 Shew_1422 Shewanella loihica PV-4 sulfate adenylyltransferase subunit 2 YP_001093548.1 1636162 D 323850 CDS YP_001093549.1 127512352 4923675 1637085..1638542 1 NC_009092.1 KEGG: cps:CPS_2143 sulfate adenylate transferase, subunit 1; TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase, large subunit 1638542 4923675 Shew_1423 Shewanella loihica PV-4 sulfate adenylyltransferase, large subunit YP_001093549.1 1637085 D 323850 CDS YP_001093550.1 127512353 4923519 1638702..1640429 1 NC_009092.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_2144 putative transporter; TrkA domain-containing protein 1640429 4923519 Shew_1424 Shewanella loihica PV-4 TrkA domain-containing protein YP_001093550.1 1638702 D 323850 CDS YP_001093551.1 127512354 4921933 1640492..1641121 1 NC_009092.1 PFAM: adenylylsulfate kinase; KEGG: cps:CPS_2145 adenylylsulfate kinase; adenylylsulfate kinase 1641121 4921933 Shew_1425 Shewanella loihica PV-4 adenylylsulfate kinase YP_001093551.1 1640492 D 323850 CDS YP_001093552.1 127512355 4923916 complement(1641299..1642765) 1 NC_009092.1 KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein 1642765 4923916 Shew_1426 Shewanella loihica PV-4 hypothetical protein YP_001093552.1 1641299 R 323850 CDS YP_001093553.1 127512356 4920613 1643151..1643945 1 NC_009092.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sfr:Sfri_1320 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1643945 4920613 Shew_1427 Shewanella loihica PV-4 3'(2'),5'-bisphosphate nucleotidase YP_001093553.1 1643151 D 323850 CDS YP_001093554.1 127512357 4920614 1643974..1644864 1 NC_009092.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1644864 4920614 Shew_1428 Shewanella loihica PV-4 fructokinase YP_001093554.1 1643974 D 323850 CDS YP_001093555.1 127512358 4920881 1644939..1645679 1 NC_009092.1 PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein 1645679 4920881 Shew_1429 Shewanella loihica PV-4 hypothetical protein YP_001093555.1 1644939 D 323850 CDS YP_001093556.1 127512359 4921357 1645692..1646360 1 NC_009092.1 KEGG: sdn:Sden_2599 hypothetical protein; hypothetical protein 1646360 4921357 Shew_1430 Shewanella loihica PV-4 hypothetical protein YP_001093556.1 1645692 D 323850 CDS YP_001093557.1 127512360 4924316 complement(1646533..1646988) 1 NC_009092.1 PFAM: protein of unknown function DUF583; KEGG: sfr:Sfri_3256 protein of unknown function DUF583; hypothetical protein 1646988 4924316 Shew_1431 Shewanella loihica PV-4 hypothetical protein YP_001093557.1 1646533 R 323850 CDS YP_001093558.1 127512361 4921272 complement(1647099..1647575) 1 NC_009092.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfr:Sfri_1326 ferredoxin-type protein NapF; ferredoxin-type protein NapF 1647575 4921272 Shew_1432 Shewanella loihica PV-4 ferredoxin-type protein NapF YP_001093558.1 1647099 R 323850 CDS YP_001093559.1 127512362 4921273 complement(1647620..1648633) 1 NC_009092.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_2676 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1648633 4921273 Shew_1433 Shewanella loihica PV-4 UDP-glucose 4-epimerase YP_001093559.1 1647620 R 323850 CDS YP_001093560.1 127512363 4921712 complement(1648633..1649553) 1 NC_009092.1 KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase GalU 1649553 4921712 Shew_1434 Shewanella loihica PV-4 UTP-glucose-1-phosphate uridylyltransferase GalU YP_001093560.1 1648633 R 323850 CDS YP_001093561.1 127512364 4921874 1649972..1650805 1 NC_009092.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1650805 phhA 4921874 phhA Shewanella loihica PV-4 phenylalanine 4-monooxygenase YP_001093561.1 1649972 D 323850 CDS YP_001093562.1 127512365 4922058 1650852..1651190 1 NC_009092.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1651190 phhB 4922058 phhB Shewanella loihica PV-4 pterin-4-alpha-carbinolamine dehydratase YP_001093562.1 1650852 D 323850 CDS YP_001093563.1 127512366 4924351 1651424..1652968 1 NC_009092.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulator TyrR 1652968 4924351 Shew_1437 Shewanella loihica PV-4 transcriptional regulator TyrR YP_001093563.1 1651424 D 323850 CDS YP_001093564.1 127512367 4924352 1653215..1654201 1 NC_009092.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sdn:Sden_2592 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1654201 4924352 Shew_1438 Shewanella loihica PV-4 fumarylacetoacetate (FAA) hydrolase YP_001093564.1 1653215 D 323850 CDS YP_001093565.1 127512368 4922365 1654295..1654939 1 NC_009092.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_2670 maleylacetoacetate isomerase; maleylacetoacetate isomerase 1654939 4922365 Shew_1439 Shewanella loihica PV-4 maleylacetoacetate isomerase YP_001093565.1 1654295 D 323850 CDS YP_001093566.1 127512369 4924364 complement(1654969..1655859) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1696 transcriptional regulator, LysR family; LysR family transcriptional regulator 1655859 4924364 Shew_1440 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093566.1 1654969 R 323850 CDS YP_001093567.1 127512370 4923045 1656060..1657277 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative; major facilitator superfamily transporter 1657277 4923045 Shew_1441 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001093567.1 1656060 D 323850 CDS YP_001093568.1 127512371 4923149 complement(1657319..1658686) 1 NC_009092.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; two component, sigma54 specific, Fis family transcriptional regulator 1658686 4923149 Shew_1442 Shewanella loihica PV-4 two component, sigma54 specific, Fis family transcriptional regulator YP_001093568.1 1657319 R 323850 CDS YP_001093569.1 127512372 4923150 complement(1658689..1660512) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_1360 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1660512 4923150 Shew_1443 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001093569.1 1658689 R 323850 CDS YP_001093570.1 127512373 4923554 complement(1660596..1661993) 1 NC_009092.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfr:Sfri_2717 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 1661993 4923554 Shew_1444 Shewanella loihica PV-4 TRAP dicarboxylate transporter subunit DctM YP_001093570.1 1660596 R 323850 CDS YP_001093571.1 127512374 4923778 complement(1661993..1662631) 1 NC_009092.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: shm:Shewmr7_1427 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1662631 4923778 Shew_1445 Shewanella loihica PV-4 tripartite ATP-independent periplasmic transporter DctQ YP_001093571.1 1661993 R 323850 CDS YP_001093572.1 127512375 4923761 complement(1662719..1663729) 1 NC_009092.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfr:Sfri_2715 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1663729 4923761 Shew_1446 Shewanella loihica PV-4 TRAP dicarboxylate transporter subunit DctP YP_001093572.1 1662719 R 323850 CDS YP_001093573.1 127512376 4924403 complement(1663993..1665258) 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: ftf:FTF0444 multidrug transporter (tetracycline resistance protein); major facilitator superfamily transporter 1665258 4924403 Shew_1447 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001093573.1 1663993 R 323850 CDS YP_001093574.1 127512377 4924404 complement(1665367..1665594) 1 NC_009092.1 KEGG: shm:Shewmr7_1429 hypothetical protein; hypothetical protein 1665594 4924404 Shew_1448 Shewanella loihica PV-4 hypothetical protein YP_001093574.1 1665367 R 323850 CDS YP_001093575.1 127512378 4922583 1667390..1668799 1 NC_009092.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1668799 gltX 4922583 gltX Shewanella loihica PV-4 glutamyl-tRNA synthetase YP_001093575.1 1667390 D 323850 CDS YP_001093576.1 127512379 4922020 1670738..1671238 1 NC_009092.1 KEGG: cps:CPS_2544 putative cytochrome P460; putative cytochrome P460 1671238 4922020 Shew_1450 Shewanella loihica PV-4 putative cytochrome P460 YP_001093576.1 1670738 D 323850 CDS YP_001093577.1 127512380 4924152 complement(1671372..1673201) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_1431 ABC transporter-related protein; ABC transporter-like protein 1673201 4924152 Shew_1451 Shewanella loihica PV-4 ABC transporter-like protein YP_001093577.1 1671372 R 323850 CDS YP_001093578.1 127512381 4922901 1673444..1674955 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: she:Shewmr4_1367 transcriptional regulator, AraC family; AraC family transcriptional regulator 1674955 4922901 Shew_1452 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001093578.1 1673444 D 323850 CDS YP_001093579.1 127512382 4922902 1675021..1675608 1 NC_009092.1 KEGG: shm:Shewmr7_1433 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase 1675608 4922902 Shew_1453 Shewanella loihica PV-4 methylated-DNA--protein-cysteine methyltransferase YP_001093579.1 1675021 D 323850 CDS YP_001093580.1 127512383 4924276 1675723..1677048 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3125 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1677048 4924276 Shew_1454 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001093580.1 1675723 D 323850 CDS YP_001093581.1 127512384 4920830 1677082..1677552 1 NC_009092.1 PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase 1677552 4920830 Shew_1455 Shewanella loihica PV-4 dual specificity protein phosphatase YP_001093581.1 1677082 D 323850 CDS YP_001093582.1 127512385 4921204 1677608..1679176 1 NC_009092.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: shm:Shewmr7_1436 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1679176 4921204 Shew_1456 Shewanella loihica PV-4 phospholipase D/transphosphatidylase YP_001093582.1 1677608 D 323850 CDS YP_001093583.1 127512386 4921861 1679220..1680164 1 NC_009092.1 PFAM: response regulator receiver; CheW domain protein; KEGG: shm:Shewmr7_1437 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1680164 4921861 Shew_1457 Shewanella loihica PV-4 response regulator receiver modulated CheW protein YP_001093583.1 1679220 D 323850 CDS YP_001093584.1 127512387 4921862 1680465..1681688 1 NC_009092.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1681688 4921862 Shew_1458 Shewanella loihica PV-4 serine/threonine transporter SstT YP_001093584.1 1680465 D 323850 CDS YP_001093585.1 127512388 4922456 1682087..1682491 1 NC_009092.1 KEGG: son:SO3119 hypothetical protein; hypothetical protein 1682491 4922456 Shew_1459 Shewanella loihica PV-4 hypothetical protein YP_001093585.1 1682087 D 323850 CDS YP_001093586.1 127512389 4922837 complement(1682576..1683229) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: sdn:Sden_2524 pseudouridylate synthase; pseudouridine synthase 1683229 4922837 Shew_1460 Shewanella loihica PV-4 pseudouridine synthase YP_001093586.1 1682576 R 323850 CDS YP_001093587.1 127512390 4923543 1683421..1684398 1 NC_009092.1 KEGG: cps:CPS_1467 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein 1684398 4923543 Shew_1461 Shewanella loihica PV-4 zinc carboxypeptidase-related protein YP_001093587.1 1683421 D 323850 CDS YP_001093588.1 127512391 4920968 complement(1684467..1685117) 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative; lysine exporter protein LysE/YggA 1685117 4920968 Shew_1462 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001093588.1 1684467 R 323850 CDS YP_001093589.1 127512392 4920969 complement(1685245..1686084) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO0766 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 1686084 4920969 Shew_1463 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001093589.1 1685245 R 323850 CDS YP_001093590.1 127512393 4921959 1686260..1687126 1 NC_009092.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1687126 nadE 4921959 nadE Shewanella loihica PV-4 NAD synthetase YP_001093590.1 1686260 D 323850 CDS YP_001093591.1 127512394 4924395 complement(1687270..1687776) 1 NC_009092.1 KEGG: she:Shewmr4_2245 hypothetical protein; hypothetical protein 1687776 4924395 Shew_1465 Shewanella loihica PV-4 hypothetical protein YP_001093591.1 1687270 R 323850 CDS YP_001093592.1 127512395 4924076 1687890..1689467 1 NC_009092.1 KEGG: she:Shewmr4_2244 hypothetical protein; hypothetical protein 1689467 4924076 Shew_1466 Shewanella loihica PV-4 hypothetical protein YP_001093592.1 1687890 D 323850 CDS YP_001093593.1 127512396 4921051 complement(1689626..1691794) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_1435 GGDEF domain; diguanylate cyclase 1691794 4921051 Shew_1467 Shewanella loihica PV-4 diguanylate cyclase YP_001093593.1 1689626 R 323850 CDS YP_001093594.1 127512397 4921052 1692664..1693248 1 NC_009092.1 hypothetical protein 1693248 4921052 Shew_1468 Shewanella loihica PV-4 hypothetical protein YP_001093594.1 1692664 D 323850 CDS YP_001093595.1 127512398 4922349 1693317..1694948 1 NC_009092.1 KEGG: gsu:GSU0552 hypothetical protein; hypothetical protein 1694948 4922349 Shew_1469 Shewanella loihica PV-4 hypothetical protein YP_001093595.1 1693317 D 323850 CDS YP_001093596.1 127512399 4922021 complement(1695404..1697191) 1 NC_009092.1 PFAM: sulfatase; KEGG: shm:Shewmr7_2295 sulfatase; sulfatase 1697191 4922021 Shew_1470 Shewanella loihica PV-4 sulfatase YP_001093596.1 1695404 R 323850 CDS YP_001093597.2 162139869 4920596 complement(1697292..1697507) 1 NC_009092.1 PFAM: protein of unknown function DUF1414; KEGG: shm:Shewmr7_2294 protein of unknown function DUF1414; hypothetical protein 1697507 4920596 Shew_1471 Shewanella loihica PV-4 hypothetical protein YP_001093597.2 1697292 R 323850 CDS YP_001093598.1 127512401 4921485 1697585..1698616 1 NC_009092.1 PFAM: 37 kDa nucleoid-associated protein; KEGG: she:Shewmr4_2217 37 kDa nucleoid-associated protein; nucleoid-associated protein NdpA 1698616 4921485 Shew_1472 Shewanella loihica PV-4 nucleoid-associated protein NdpA YP_001093598.1 1697585 D 323850 CDS YP_001093599.1 127512402 4921486 1698846..1699730 1 NC_009092.1 KEGG: sdn:Sden_2379 hypothetical protein; hypothetical protein 1699730 4921486 Shew_1473 Shewanella loihica PV-4 hypothetical protein YP_001093599.1 1698846 D 323850 CDS YP_001093600.1 127512403 4922461 1699794..1700657 1 NC_009092.1 PFAM: peptidase M23B; KEGG: shm:Shewmr7_2290 peptidase M23B; peptidase M23B 1700657 4922461 Shew_1474 Shewanella loihica PV-4 peptidase M23B YP_001093600.1 1699794 D 323850 CDS YP_001093601.1 127512404 4922895 1700959..1701648 1 NC_009092.1 KEGG: sdn:Sden_3375 hypothetical protein; hypothetical protein 1701648 4922895 Shew_1475 Shewanella loihica PV-4 hypothetical protein YP_001093601.1 1700959 D 323850 CDS YP_001093602.1 127512405 4923475 1701706..1702344 1 NC_009092.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1702344 4923475 Shew_1476 Shewanella loihica PV-4 RNA polymerase sigma factor YP_001093602.1 1701706 D 323850 CDS YP_001093603.1 127512406 4924101 1702337..1703086 1 NC_009092.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: sdn:Sden_3373 anti-sigma factor ChrR , putative; anti-ECF sigma factor ChrR 1703086 4924101 Shew_1477 Shewanella loihica PV-4 anti-ECF sigma factor ChrR YP_001093603.1 1702337 D 323850 CDS YP_001093604.1 127512407 4924102 1703136..1704080 1 NC_009092.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: cps:CPS_1379 hypothetical protein; hypothetical protein 1704080 4924102 Shew_1478 Shewanella loihica PV-4 hypothetical protein YP_001093604.1 1703136 D 323850 CDS YP_001093605.1 127512408 4923500 1704077..1705513 1 NC_009092.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: pha:PSHAb0453 putative deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase 1705513 4923500 Shew_1479 Shewanella loihica PV-4 deoxyribodipyrimidine photo-lyase YP_001093605.1 1704077 D 323850 CDS YP_001093606.1 127512409 4922038 1705515..1705958 1 NC_009092.1 PFAM: protein of unknown function DUF1486; KEGG: sdn:Sden_3372 hypothetical protein; hypothetical protein 1705958 4922038 Shew_1480 Shewanella loihica PV-4 hypothetical protein YP_001093606.1 1705515 D 323850 CDS YP_001093607.1 127512410 4922446 1705968..1706690 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdn:Sden_3371 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1706690 4922446 Shew_1481 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001093607.1 1705968 D 323850 CDS YP_001093608.1 127512411 4924253 1706687..1707940 1 NC_009092.1 PFAM: amine oxidase; KEGG: sdn:Sden_3370 amine oxidase; amine oxidase 1707940 4924253 Shew_1482 Shewanella loihica PV-4 amine oxidase YP_001093608.1 1706687 D 323850 CDS YP_001093609.1 127512412 4924254 1707937..1708740 1 NC_009092.1 PFAM: protein of unknown function DUF1365; KEGG: sdn:Sden_3369 protein of unknown function DUF1365; hypothetical protein 1708740 4924254 Shew_1483 Shewanella loihica PV-4 hypothetical protein YP_001093609.1 1707937 D 323850 CDS YP_001093610.1 127512413 4922614 1708852..1710132 1 NC_009092.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_3368 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1710132 4922614 Shew_1484 Shewanella loihica PV-4 cyclopropane-fatty-acyl-phospholipid synthase YP_001093610.1 1708852 D 323850 CDS YP_001093611.1 127512414 4921666 1710110..1710619 1 NC_009092.1 KEGG: sdn:Sden_3367 hypothetical protein; hypothetical protein 1710619 4921666 Shew_1485 Shewanella loihica PV-4 hypothetical protein YP_001093611.1 1710110 D 323850 CDS YP_001093612.1 127512415 4924343 1710668..1711156 1 NC_009092.1 KEGG: sdn:Sden_3366 hypothetical protein; hypothetical protein 1711156 4924343 Shew_1486 Shewanella loihica PV-4 hypothetical protein YP_001093612.1 1710668 D 323850 CDS YP_001093613.1 127512416 4923803 1711153..1711686 1 NC_009092.1 KEGG: sdn:Sden_3365 hypothetical protein; hypothetical protein 1711686 4923803 Shew_1487 Shewanella loihica PV-4 hypothetical protein YP_001093613.1 1711153 D 323850 CDS YP_001093614.1 127512417 4923804 1711941..1713326 1 NC_009092.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: vpa:VPA0635 putative oxidoreductase, oxygen dependent, FAD-dependent protein; FAD linked oxidase domain-containing protein 1713326 4923804 Shew_1488 Shewanella loihica PV-4 FAD linked oxidase domain-containing protein YP_001093614.1 1711941 D 323850 CDS YP_001093615.1 127512418 4920643 complement(1713445..1714035) 1 NC_009092.1 PFAM: protein of unknown function DUF991; KEGG: sdn:Sden_2377 protein of unknown function DUF991; hypothetical protein 1714035 4920643 Shew_1489 Shewanella loihica PV-4 hypothetical protein YP_001093615.1 1713445 R 323850 CDS YP_001093616.1 127512419 4922457 complement(1714110..1714694) 1 NC_009092.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: shm:Shewmr7_2287 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1714694 4922457 Shew_1490 Shewanella loihica PV-4 ErfK/YbiS/YcfS/YnhG family protein YP_001093616.1 1714110 R 323850 CDS YP_001093617.1 127512420 4921514 1714795..1715622 1 NC_009092.1 PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein 1715622 4921514 Shew_1491 Shewanella loihica PV-4 Ion transport protein YP_001093617.1 1714795 D 323850 CDS YP_001093618.1 127512421 4924005 1715681..1717168 1 NC_009092.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein 1717168 4924005 Shew_1492 Shewanella loihica PV-4 MATE efflux family protein YP_001093618.1 1715681 D 323850 CDS YP_001093619.1 127512422 4924006 complement(1717338..1717607) 1 NC_009092.1 KEGG: son:SO1921 hypothetical protein; hypothetical protein 1717607 4924006 Shew_1493 Shewanella loihica PV-4 hypothetical protein YP_001093619.1 1717338 R 323850 CDS YP_001093620.1 127512423 4921972 1717732..1718055 1 NC_009092.1 PFAM: uncharacterized conserved protein UCP029143; KEGG: vvu:VV20047 hypothetical protein; hypothetical protein 1718055 4921972 Shew_1494 Shewanella loihica PV-4 hypothetical protein YP_001093620.1 1717732 D 323850 CDS YP_001093621.1 127512424 4922225 1718148..1718813 1 NC_009092.1 KEGG: abo:ABO_1607 hypothetical protein; hypothetical protein 1718813 4922225 Shew_1495 Shewanella loihica PV-4 hypothetical protein YP_001093621.1 1718148 D 323850 CDS YP_001093622.1 127512425 4920589 complement(1718829..1719362) 1 NC_009092.1 KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 1719362 4920589 Shew_1496 Shewanella loihica PV-4 putative lipoprotein YP_001093622.1 1718829 R 323850 CDS YP_001093623.1 127512426 4922356 1719558..1720292 1 NC_009092.1 PFAM: protein of unknown function DUF1538; KEGG: sfr:Sfri_2271 protein of unknown function DUF1538; hypothetical protein 1720292 4922356 Shew_1497 Shewanella loihica PV-4 hypothetical protein YP_001093623.1 1719558 D 323850 CDS YP_001093624.1 127512427 4922357 1720292..1721080 1 NC_009092.1 PFAM: protein of unknown function DUF1538; KEGG: sfr:Sfri_2272 protein of unknown function DUF1538; hypothetical protein 1721080 4922357 Shew_1498 Shewanella loihica PV-4 hypothetical protein YP_001093624.1 1720292 D 323850 CDS YP_001093625.1 127512428 4921875 1721070..1721420 1 NC_009092.1 KEGG: sfr:Sfri_2273 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II 1721420 4921875 Shew_1499 Shewanella loihica PV-4 putative nitrogen regulatory protein P-II YP_001093625.1 1721070 D 323850 CDS YP_001093626.1 127512429 4922028 1721417..1721821 1 NC_009092.1 PFAM: CBS domain containing protein; KEGG: sfr:Sfri_2274 putative signal-transduction protein with CBS domains; signal transduction protein 1721821 4922028 Shew_1500 Shewanella loihica PV-4 signal transduction protein YP_001093626.1 1721417 D 323850 CDS YP_001093627.1 127512430 4921958 complement(1721906..1722262) 1 NC_009092.1 PFAM: glutaredoxin; KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin 1722262 4921958 Shew_1501 Shewanella loihica PV-4 glutaredoxin YP_001093627.1 1721906 R 323850 CDS YP_001093628.1 127512431 4920745 complement(1722475..1725834) 1 NC_009092.1 PFAM: protein of unknown function DUF748; KEGG: she:Shewmr4_2416 protein of unknown function DUF748; hypothetical protein 1725834 4920745 Shew_1502 Shewanella loihica PV-4 hypothetical protein YP_001093628.1 1722475 R 323850 CDS YP_001093629.1 127512432 4920746 1726005..1726997 1 NC_009092.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mxa:MXAN_6919 ferredoxin reductase; oxidoreductase FAD-binding subunit 1726997 4920746 Shew_1503 Shewanella loihica PV-4 oxidoreductase FAD-binding subunit YP_001093629.1 1726005 D 323850 CDS YP_001093630.1 127512433 4920723 1727129..1727560 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_2038 hypothetical protein; N-acetyltransferase GCN5 1727560 4920723 Shew_1504 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093630.1 1727129 D 323850 CDS YP_001093631.1 127512434 4924281 1727632..1728336 1 NC_009092.1 KEGG: shm:Shewmr7_2484 hypothetical protein; hypothetical protein 1728336 4924281 Shew_1505 Shewanella loihica PV-4 hypothetical protein YP_001093631.1 1727632 D 323850 CDS YP_001093632.1 127512435 4924221 1728569..1728919 1 NC_009092.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_1598 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1728919 4924221 Shew_1506 Shewanella loihica PV-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001093632.1 1728569 D 323850 CDS YP_001093633.1 127512436 4922637 1728922..1729269 1 NC_009092.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: vch:VC2669 5-carboxymethyl-2-hydroxymuconate delta isomerase, putative; 5-carboxymethyl-2-hydroxymuconate isomerase 1729269 4922637 Shew_1507 Shewanella loihica PV-4 5-carboxymethyl-2-hydroxymuconate isomerase YP_001093633.1 1728922 D 323850 CDS YP_001093634.1 127512437 4922638 1729343..1730116 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVUA0150 bacterial extracellular solute-binding protein, family 3; extracellular solute-binding protein 1730116 4922638 Shew_1508 Shewanella loihica PV-4 extracellular solute-binding protein YP_001093634.1 1729343 D 323850 CDS YP_001093635.1 127512438 4920788 complement(1730192..1731850) 1 NC_009092.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 1731850 asnB 4920788 asnB Shewanella loihica PV-4 asparagine synthetase B YP_001093635.1 1730192 R 323850 CDS YP_001093636.1 127512439 4920667 complement(1732190..1733851) 1 NC_009092.1 PFAM: peptidase M28; KEGG: sfr:Sfri_1604 peptidase M28; peptidase M28 1733851 4920667 Shew_1510 Shewanella loihica PV-4 peptidase M28 YP_001093636.1 1732190 R 323850 CDS YP_001093637.1 127512440 4924222 complement(1734073..1734831) 1 NC_009092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_2382 HAD-superfamily hydrolase, subfamily IIA; UMP phosphatase 1734831 4924222 Shew_1511 Shewanella loihica PV-4 UMP phosphatase YP_001093637.1 1734073 R 323850 CDS YP_001093638.1 127512441 4924074 complement(1735092..1735736) 1 NC_009092.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1735736 purN 4924074 purN Shewanella loihica PV-4 phosphoribosylglycinamide formyltransferase YP_001093638.1 1735092 R 323850 CDS YP_001093639.1 127512442 4924075 complement(1735736..1736773) 1 NC_009092.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1736773 4924075 Shew_1513 Shewanella loihica PV-4 phosphoribosylaminoimidazole synthetase YP_001093639.1 1735736 R 323850 CDS YP_001093640.1 127512443 4922520 1736985..1737611 1 NC_009092.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1737611 upp 4922520 upp Shewanella loihica PV-4 uracil phosphoribosyltransferase YP_001093640.1 1736985 D 323850 CDS YP_001093641.1 127512444 4924043 complement(1737706..1739025) 1 NC_009092.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_2377 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1739025 4924043 Shew_1515 Shewanella loihica PV-4 Na+/H+ antiporter NhaC YP_001093641.1 1737706 R 323850 CDS YP_001093642.1 127512445 4921711 1739339..1739944 1 NC_009092.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_2448 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 1739944 4921711 Shew_1516 Shewanella loihica PV-4 alkyl hydroperoxide reductase YP_001093642.1 1739339 D 323850 CDS YP_001093643.1 127512446 4921090 complement(1740080..1740661) 1 NC_009092.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 1740661 4921090 Shew_1517 Shewanella loihica PV-4 putative adenylyl cyclase CyaB YP_001093643.1 1740080 R 323850 CDS YP_001093644.1 127512447 4921091 1740943..1741689 1 NC_009092.1 KEGG: sdn:Sden_0883 hypothetical protein; hypothetical protein 1741689 4921091 Shew_1518 Shewanella loihica PV-4 hypothetical protein YP_001093644.1 1740943 D 323850 CDS YP_001093645.1 127512448 4922565 1741841..1742857 1 NC_009092.1 KEGG: shm:Shewmr7_0087 hypothetical protein; hypothetical protein 1742857 4922565 Shew_1519 Shewanella loihica PV-4 hypothetical protein YP_001093645.1 1741841 D 323850 CDS YP_001093646.1 127512449 4922463 complement(1742957..1743730) 1 NC_009092.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1743730 4922463 Shew_1520 Shewanella loihica PV-4 ribonuclease T YP_001093646.1 1742957 R 323850 CDS YP_001093647.1 127512450 4922464 1743839..1744699 1 NC_009092.1 PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2446 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1744699 4922464 Shew_1521 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001093647.1 1743839 D 323850 CDS YP_001093648.1 127512451 4922056 1745372..1747462 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: shm:Shewmr7_2445 prolyl oligopeptidase; prolyl oligopeptidase 1747462 4922056 Shew_1522 Shewanella loihica PV-4 prolyl oligopeptidase YP_001093648.1 1745372 D 323850 CDS YP_001093649.1 127512452 4922057 1747621..1748019 1 NC_009092.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2444 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 1748019 4922057 Shew_1523 Shewanella loihica PV-4 4-hydroxybenzoyl-CoA thioesterase YP_001093649.1 1747621 D 323850 CDS YP_001093650.1 127512453 4924141 1748009..1748698 1 NC_009092.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1748698 4924141 Shew_1524 Shewanella loihica PV-4 MotA/TolQ/ExbB proton channel YP_001093650.1 1748009 D 323850 CDS YP_001093651.1 127512454 4922748 1748698..1749132 1 NC_009092.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shm:Shewmr7_2442 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1749132 4922748 Shew_1525 Shewanella loihica PV-4 biopolymer transport protein ExbD/TolR YP_001093651.1 1748698 D 323850 CDS YP_001093652.1 127512455 4923143 1749136..1750071 1 NC_009092.1 PFAM: TolA family protein; KEGG: sfr:Sfri_1461 TolA family protein; TolA family protein 1750071 4923143 Shew_1526 Shewanella loihica PV-4 TolA family protein YP_001093652.1 1749136 D 323850 CDS YP_001093653.1 127512456 4924145 1750081..1751406 1 NC_009092.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1751406 tolB 4924145 tolB Shewanella loihica PV-4 translocation protein TolB YP_001093653.1 1750081 D 323850 CDS YP_001093654.1 127512457 4924146 1751441..1751983 1 NC_009092.1 TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2439 OmpA/MotB domain protein; OmpA domain-containing protein 1751983 4924146 Shew_1528 Shewanella loihica PV-4 OmpA domain-containing protein YP_001093654.1 1751441 D 323850 CDS YP_001093655.1 127512458 4923265 1752003..1752725 1 NC_009092.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2438 hypothetical protein; hypothetical protein 1752725 4923265 Shew_1529 Shewanella loihica PV-4 hypothetical protein YP_001093655.1 1752003 D 323850 CDS YP_001093656.1 127512459 4921918 1754711..1755853 1 NC_009092.1 PFAM: porin; KEGG: she:Shewmr4_2365 hypothetical protein; porin 1755853 4921918 Shew_1530 Shewanella loihica PV-4 porin YP_001093656.1 1754711 D 323850 CDS YP_001093657.1 127512460 4922684 complement(1755907..1756164) 1 NC_009092.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1756164 grxA 4922684 grxA Shewanella loihica PV-4 glutaredoxin YP_001093657.1 1755907 R 323850 CDS YP_001093658.1 127512461 4921701 complement(1756230..1757969) 1 NC_009092.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2435 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 1757969 4921701 Shew_1532 Shewanella loihica PV-4 type III restriction enzyme, res subunit YP_001093658.1 1756230 R 323850 CDS YP_001093659.1 127512462 4921702 complement(1758093..1760045) 1 NC_009092.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1760045 4921702 Shew_1533 Shewanella loihica PV-4 acetyl-CoA synthetase YP_001093659.1 1758093 R 323850 CDS YP_001093660.1 127512463 4921355 1760224..1763646 1 NC_009092.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_2361 multi-sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 1763646 4921355 Shew_1534 Shewanella loihica PV-4 integral membrane sensor hybrid histidine kinase YP_001093660.1 1760224 D 323850 CDS YP_001093661.1 127512464 4920945 1763680..1764291 1 NC_009092.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: vch:VCA1004 hypothetical protein; fumarylacetoacetate (FAA) hydrolase 1764291 4920945 Shew_1535 Shewanella loihica PV-4 fumarylacetoacetate (FAA) hydrolase YP_001093661.1 1763680 D 323850 CDS YP_001093662.1 127512465 4922683 1764380..1765006 1 NC_009092.1 KEGG: dps:DP1720 probable chloramphenicol acetyltransferase; putative chloramphenicol acetyltransferase 1765006 4922683 Shew_1536 Shewanella loihica PV-4 putative chloramphenicol acetyltransferase YP_001093662.1 1764380 D 323850 CDS YP_001093663.1 127512466 4921536 1765328..1766617 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2193 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1766617 4921536 Shew_1537 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001093663.1 1765328 D 323850 CDS YP_001093664.1 127512467 4921537 1766794..1767039 1 NC_009092.1 KEGG: pat:Patl_1355 hypothetical protein; hypothetical protein 1767039 4921537 Shew_1538 Shewanella loihica PV-4 hypothetical protein YP_001093664.1 1766794 D 323850 CDS YP_001093665.1 127512468 4922094 complement(1767142..1768011) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1785 transcriptional regulator, LysR family; LysR family transcriptional regulator 1768011 4922094 Shew_1539 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093665.1 1767142 R 323850 CDS YP_001093666.1 127512469 4922268 1768212..1769342 1 NC_009092.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_2191 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 1769342 4922268 Shew_1540 Shewanella loihica PV-4 alcohol dehydrogenase YP_001093666.1 1768212 D 323850 CDS YP_001093667.1 127512470 4923753 1769403..1770239 1 NC_009092.1 PFAM: putative esterase; KEGG: sfr:Sfri_4058 carboxylesterase; carboxylesterase 1770239 4923753 Shew_1541 Shewanella loihica PV-4 carboxylesterase YP_001093667.1 1769403 D 323850 CDS YP_001093668.1 127512471 4923181 complement(1770262..1771800) 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRB0490 hypothetical protein; major facilitator superfamily transporter 1771800 4923181 Shew_1542 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001093668.1 1770262 R 323850 CDS YP_001093669.1 127512472 4923182 complement(1771815..1772873) 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB0491 hypothetical secretion protein; secretion protein HlyD family protein 1772873 4923182 Shew_1543 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001093669.1 1771815 R 323850 CDS YP_001093670.1 127512473 4923779 1772921..1773580 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB0492 hypothetical protein; TetR family transcriptional regulator 1773580 4923779 Shew_1544 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001093670.1 1772921 D 323850 CDS YP_001093671.1 127512474 4920977 complement(1773734..1774393) 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_1663 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1774393 4920977 Shew_1545 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001093671.1 1773734 R 323850 CDS YP_001093672.1 127512475 4922774 complement(1774644..1775069) 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1775069 4922774 Shew_1546 Shewanella loihica PV-4 thioesterase superfamily protein YP_001093672.1 1774644 R 323850 CDS YP_001093673.1 127512476 4921437 complement(1775223..1776284) 1 NC_009092.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1776284 4921437 Shew_1547 Shewanella loihica PV-4 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001093673.1 1775223 R 323850 CDS YP_001093674.1 127512477 4921438 complement(1776462..1777274) 1 NC_009092.1 PFAM: protein of unknown function DUF299; KEGG: sfr:Sfri_2298 protein of unknown function DUF299; hypothetical protein 1777274 4921438 Shew_1548 Shewanella loihica PV-4 hypothetical protein YP_001093674.1 1776462 R 323850 CDS YP_001093675.1 127512478 4921835 1777401..1779770 1 NC_009092.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1779770 4921835 Shew_1549 Shewanella loihica PV-4 phosphoenolpyruvate synthase YP_001093675.1 1777401 D 323850 CDS YP_001093676.1 127512479 4920835 1779880..1782960 1 NC_009092.1 PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein 1782960 4920835 Shew_1550 Shewanella loihica PV-4 FAD linked oxidase domain-containing protein YP_001093676.1 1779880 D 323850 CDS YP_001093677.1 127512480 4920998 1783023..1783472 1 NC_009092.1 KEGG: sdn:Sden_2007 hypothetical protein; hypothetical protein 1783472 4920998 Shew_1551 Shewanella loihica PV-4 hypothetical protein YP_001093677.1 1783023 D 323850 CDS YP_001093678.1 127512481 4922496 1783596..1784012 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_1670 transcriptional regulator, MarR family; MarR family transcriptional regulator 1784012 4922496 Shew_1552 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001093678.1 1783596 D 323850 CDS YP_001093679.1 127512482 4922497 1784052..1784534 1 NC_009092.1 KEGG: bpa:BPP2691 hypothetical protein; hypothetical protein 1784534 4922497 Shew_1553 Shewanella loihica PV-4 hypothetical protein YP_001093679.1 1784052 D 323850 CDS YP_001093680.1 127512483 4922747 complement(1784670..1785014) 1 NC_009092.1 KEGG: shm:Shewmr7_1672 hypothetical protein; hypothetical protein 1785014 4922747 Shew_1554 Shewanella loihica PV-4 hypothetical protein YP_001093680.1 1784670 R 323850 CDS YP_001093681.1 127512484 4922892 complement(1785277..1786308) 1 NC_009092.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sdn:Sden_1823 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 1786308 4922892 Shew_1555 Shewanella loihica PV-4 Glu/Leu/Phe/Val dehydrogenase YP_001093681.1 1785277 R 323850 CDS YP_001093682.1 127512485 4923690 1786565..1787014 1 NC_009092.1 KEGG: shm:Shewmr7_1674 hypothetical protein; hypothetical protein 1787014 4923690 Shew_1556 Shewanella loihica PV-4 hypothetical protein YP_001093682.1 1786565 D 323850 CDS YP_001093683.1 127512486 4921667 complement(1787202..1788362) 1 NC_009092.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: sfr:Sfri_2263 cupin 4 family protein; cupin 4 family protein 1788362 4921667 Shew_1557 Shewanella loihica PV-4 cupin 4 family protein YP_001093683.1 1787202 R 323850 CDS YP_001093684.1 127512487 4921668 complement(1788546..1789916) 1 NC_009092.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1789916 4921668 Shew_1558 Shewanella loihica PV-4 adenylosuccinate lyase YP_001093684.1 1788546 R 323850 CDS YP_001093685.1 127512488 4921106 complement(1789949..1790566) 1 NC_009092.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1790566 4921106 Shew_1559 Shewanella loihica PV-4 hypothetical protein YP_001093685.1 1789949 R 323850 CDS YP_001093686.1 127512489 4921752 complement(1790570..1791685) 1 NC_009092.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1791685 mnmA 4921752 mnmA Shewanella loihica PV-4 tRNA-specific 2-thiouridylase MnmA YP_001093686.1 1790570 R 323850 CDS YP_001093687.1 127512490 4921863 complement(1791863..1792312) 1 NC_009092.1 PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase 1792312 4921863 Shew_1561 Shewanella loihica PV-4 NUDIX hydrolase YP_001093687.1 1791863 R 323850 CDS YP_001093688.1 127512491 4921864 complement(1792324..1793118) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: sfr:Sfri_2258 pseudouridine synthase, Rsu; pseudouridylate synthase 1793118 4921864 Shew_1562 Shewanella loihica PV-4 pseudouridylate synthase YP_001093688.1 1792324 R 323850 CDS YP_001093689.1 127512492 4921977 1793391..1795610 1 NC_009092.1 KEGG: shm:Shewmr7_1681 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 1795610 4921977 Shew_1563 Shewanella loihica PV-4 isocitrate dehydrogenase YP_001093689.1 1793391 D 323850 CDS YP_001093690.1 127512493 4923209 complement(1795736..1795942) 1 NC_009092.1 KEGG: shm:Shewmr7_1721 cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1795942 4923209 Shew_1564 Shewanella loihica PV-4 cold-shock DNA-binding domain-containing protein YP_001093690.1 1795736 R 323850 CDS YP_001093691.1 127512494 4923443 1796187..1796495 1 NC_009092.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1796495 clpS 4923443 clpS Shewanella loihica PV-4 ATP-dependent Clp protease adaptor protein ClpS YP_001093691.1 1796187 D 323850 CDS YP_001093692.1 127512495 4923691 1796531..1798789 1 NC_009092.1 KEGG: shm:Shewmr7_1723 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 1798789 4923691 Shew_1566 Shewanella loihica PV-4 ATP-dependent Clp protease ATP-binding protein ClpA YP_001093692.1 1796531 D 323850 CDS YP_001093693.1 127512496 4923692 complement(1799009..1799227) 1 NC_009092.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1799227 infA 4923692 infA Shewanella loihica PV-4 translation initiation factor IF-1 YP_001093693.1 1799009 R 323850 CDS YP_001093694.1 127512497 4923783 complement(1799358..1800062) 1 NC_009092.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1800062 4923783 Shew_1568 Shewanella loihica PV-4 arginyl-tRNA-protein transferase YP_001093694.1 1799358 R 323850 CDS YP_001093695.1 127512498 4922593 complement(1800052..1800762) 1 NC_009092.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1800762 aat 4922593 aat Shewanella loihica PV-4 leucyl/phenylalanyl-tRNA--protein transferase YP_001093695.1 1800052 R 323850 CDS YP_001093696.1 127512499 4924307 1800815..1801306 1 NC_009092.1 PFAM: 17 kDa surface antigen; KEGG: she:Shewmr4_1652 17 kDa surface antigen; 17 kDa surface antigen 1801306 4924307 Shew_1570 Shewanella loihica PV-4 17 kDa surface antigen YP_001093696.1 1800815 D 323850 CDS YP_001093697.1 127512500 4924308 complement(1801435..1801794) 1 NC_009092.1 KEGG: sfr:Sfri_2249 hypothetical protein; hypothetical protein 1801794 4924308 Shew_1571 Shewanella loihica PV-4 hypothetical protein YP_001093697.1 1801435 R 323850 CDS YP_001093698.1 127512501 4924348 1802005..1802757 1 NC_009092.1 PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 1802757 4924348 Shew_1572 Shewanella loihica PV-4 hypothetical protein YP_001093698.1 1802005 D 323850 CDS YP_001093699.1 127512502 4924354 complement(1802861..1804882) 1 NC_009092.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1804882 metG 4924354 metG Shewanella loihica PV-4 methionyl-tRNA synthetase YP_001093699.1 1802861 R 323850 CDS YP_001093700.1 127512503 4923835 1805042..1806154 1 NC_009092.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 1806154 4923835 Shew_1574 Shewanella loihica PV-4 ATP-binding Mrp/Nbp35 family protein YP_001093700.1 1805042 D 323850 CDS YP_001093701.1 127512504 4924405 1806167..1806802 1 NC_009092.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1806802 4924405 Shew_1575 Shewanella loihica PV-4 uridine kinase YP_001093701.1 1806167 D 323850 CDS YP_001093702.1 127512505 4924406 1806830..1807414 1 NC_009092.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1807414 dcd 4924406 dcd Shewanella loihica PV-4 deoxycytidine triphosphate deaminase YP_001093702.1 1806830 D 323850 CDS YP_001093703.1 127512506 4922957 1807414..1808247 1 NC_009092.1 PFAM: aminotransferase, class IV; KEGG: shm:Shewmr7_1734 aminotransferase, class IV; aminotransferase, class IV 1808247 4922957 Shew_1577 Shewanella loihica PV-4 aminotransferase, class IV YP_001093703.1 1807414 D 323850 CDS YP_001093704.1 127512507 4922445 1808244..1809251 1 NC_009092.1 PFAM: aminodeoxychorismate lyase; KEGG: shm:Shewmr7_1735 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1809251 4922445 Shew_1578 Shewanella loihica PV-4 aminodeoxychorismate lyase YP_001093704.1 1808244 D 323850 CDS YP_001093705.1 127512508 4922373 1809248..1809880 1 NC_009092.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1809880 tmk 4922373 tmk Shewanella loihica PV-4 thymidylate kinase YP_001093705.1 1809248 D 323850 CDS YP_001093706.1 127512509 4922374 1809898..1810812 1 NC_009092.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 1810812 4922374 Shew_1580 Shewanella loihica PV-4 DNA polymerase III subunit delta' YP_001093706.1 1809898 D 323850 CDS YP_001093707.1 127512510 4922354 1810819..1811145 1 NC_009092.1 PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_1738 type IV pilus biogenesis protein PilZ; type IV pilus assembly PilZ 1811145 4922354 Shew_1581 Shewanella loihica PV-4 type IV pilus assembly PilZ YP_001093707.1 1810819 D 323850 CDS YP_001093708.1 127512511 4923710 1811190..1811978 1 NC_009092.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_1739 hydrolase, TatD family; TatD family hydrolase 1811978 4923710 Shew_1582 Shewanella loihica PV-4 TatD family hydrolase YP_001093708.1 1811190 D 323850 CDS YP_001093709.1 127512512 4923725 complement(1812330..1813790) 1 NC_009092.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1813790 yebU 4923725 yebU Shewanella loihica PV-4 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_001093709.1 1812330 R 323850 CDS YP_001093710.1 127512513 4921017 1813879..1815105 1 NC_009092.1 PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1666 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 1815105 4921017 Shew_1584 Shewanella loihica PV-4 nucleoside recognition domain-containing protein YP_001093710.1 1813879 D 323850 CDS YP_001093711.1 127512514 4921018 complement(1815221..1816120) 1 NC_009092.1 KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein 1816120 4921018 Shew_1585 Shewanella loihica PV-4 hypothetical protein YP_001093711.1 1815221 R 323850 CDS YP_001093712.1 127512515 4921168 complement(1816343..1816714) 1 NC_009092.1 PFAM: diacylglycerol kinase; KEGG: sfr:Sfri_1483 diacylglycerol kinase; diacylglycerol kinase 1816714 4921168 Shew_1586 Shewanella loihica PV-4 diacylglycerol kinase YP_001093712.1 1816343 R 323850 CDS YP_001093713.1 127512516 4922440 1817076..1817888 1 NC_009092.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1817888 4922440 Shew_1587 Shewanella loihica PV-4 DNA ligase YP_001093713.1 1817076 D 323850 CDS YP_001093714.1 127512517 4922939 1817918..1818382 1 NC_009092.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: she:Shewmr4_2189 protein tyrosine phosphatase; protein tyrosine phosphatase 1818382 4922939 Shew_1588 Shewanella loihica PV-4 protein tyrosine phosphatase YP_001093714.1 1817918 D 323850 CDS YP_001093715.1 127512518 4922940 complement(1818553..1819494) 1 NC_009092.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1819494 rbgA 4922940 rbgA Shewanella loihica PV-4 ribosomal biogenesis GTPase YP_001093715.1 1818553 R 323850 CDS YP_001093716.1 127512519 4923297 complement(1819603..1820442) 1 NC_009092.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_2262 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 1820442 4923297 Shew_1590 Shewanella loihica PV-4 2OG-Fe(II) oxygenase YP_001093716.1 1819603 R 323850 CDS YP_001093717.1 127512520 4923688 1820734..1821651 1 NC_009092.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1821651 4923688 Shew_1591 Shewanella loihica PV-4 bifunctional methionine sulfoxide reductase B/A protein YP_001093717.1 1820734 D 323850 CDS YP_001093718.1 127512521 4923757 complement(1821719..1823278) 1 NC_009092.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdn:Sden_2303 sulphate transporter; sulfate transporter 1823278 4923757 Shew_1592 Shewanella loihica PV-4 sulfate transporter YP_001093718.1 1821719 R 323850 CDS YP_001093719.1 127512522 4921198 complement(1823406..1826792) 1 NC_009092.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: shm:Shewmr7_2475 ribonuclease, Rne/Rng family; ribonuclease 1826792 4921198 Shew_1593 Shewanella loihica PV-4 ribonuclease YP_001093719.1 1823406 R 323850 CDS YP_001093720.1 127512523 4921199 1827362..1828351 1 NC_009092.1 KEGG: shm:Shewmr7_2474 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1828351 4921199 Shew_1594 Shewanella loihica PV-4 RluA family pseudouridine synthase YP_001093720.1 1827362 D 323850 CDS YP_001093721.1 127512524 4922598 1828348..1829007 1 NC_009092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfr:Sfri_1492 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 1829007 4922598 Shew_1595 Shewanella loihica PV-4 HAD family hydrolase YP_001093721.1 1828348 D 323850 CDS YP_001093722.1 127512525 4922025 complement(1828988..1830361) 1 NC_009092.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: mca:MCA0985 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase 1830361 4922025 Shew_1596 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase YP_001093722.1 1828988 R 323850 CDS YP_001093723.1 127512526 4921924 complement(1830705..1831301) 1 NC_009092.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein 1831301 4921924 Shew_1597 Shewanella loihica PV-4 maf protein YP_001093723.1 1830705 R 323850 CDS YP_001093724.1 127512527 4921925 1831732..1832256 1 NC_009092.1 PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein; hypothetical protein 1832256 4921925 Shew_1598 Shewanella loihica PV-4 hypothetical protein YP_001093724.1 1831732 D 323850 CDS YP_001093725.1 127512528 4923397 1832274..1832444 1 NC_009092.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1832444 rpmF 4923397 rpmF Shewanella loihica PV-4 50S ribosomal protein L32 YP_001093725.1 1832274 D 323850 CDS YP_001093726.1 127512529 4921955 1832459..1833487 1 NC_009092.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1833487 4921955 Shew_1600 Shewanella loihica PV-4 putative glycerol-3-phosphate acyltransferase PlsX YP_001093726.1 1832459 D 323850 CDS YP_001093727.1 127512530 4921974 1833497..1834456 1 NC_009092.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1834456 4921974 Shew_1601 Shewanella loihica PV-4 3-oxoacyl-ACP synthase YP_001093727.1 1833497 D 323850 CDS YP_001093728.1 127512531 4921872 1834503..1835429 1 NC_009092.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: she:Shewmr4_2397 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 1835429 4921872 Shew_1602 Shewanella loihica PV-4 malonyl CoA-acyl carrier protein transacylase YP_001093728.1 1834503 D 323850 CDS YP_001093729.1 127512532 4921873 1835440..1836186 1 NC_009092.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_2466 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1836186 4921873 Shew_1603 Shewanella loihica PV-4 3-oxoacyl-(acyl-carrier-protein) reductase YP_001093729.1 1835440 D 323850 CDS YP_001093730.1 127512533 4921290 1836347..1836580 1 NC_009092.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1836580 acpP 4921290 acpP Shewanella loihica PV-4 acyl carrier protein YP_001093730.1 1836347 D 323850 CDS YP_001093731.1 127512534 4923238 1836749..1837990 1 NC_009092.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase 1837990 4923238 Shew_1605 Shewanella loihica PV-4 beta-ketoacyl synthase YP_001093731.1 1836749 D 323850 CDS YP_001093732.1 127512535 4921697 1838176..1838508 1 NC_009092.1 KEGG: she:Shewmr4_2393 hypothetical protein; hypothetical protein 1838508 4921697 Shew_1606 Shewanella loihica PV-4 hypothetical protein YP_001093732.1 1838176 D 323850 CDS YP_001093733.1 127512536 4921698 1838586..1839074 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1839074 4921698 Shew_1607 Shewanella loihica PV-4 thioesterase superfamily protein YP_001093733.1 1838586 D 323850 CDS YP_001093734.1 127512537 4922054 1839098..1840681 1 NC_009092.1 PFAM: carbohydrate kinase, FGGY; KEGG: rfr:Rfer_2334 carbohydrate kinase, FGGY; carbohydrate kinase 1840681 4922054 Shew_1608 Shewanella loihica PV-4 carbohydrate kinase YP_001093734.1 1839098 D 323850 CDS YP_001093735.1 127512538 4923392 1840705..1841580 1 NC_009092.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: she:Shewmr4_2391 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 1841580 4923392 Shew_1609 Shewanella loihica PV-4 6-phosphogluconate dehydrogenase YP_001093735.1 1840705 D 323850 CDS YP_001093736.1 127512539 4921981 complement(1841674..1842564) 1 NC_009092.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1842564 4921981 Shew_1610 Shewanella loihica PV-4 cytidine deaminase YP_001093736.1 1841674 R 323850 CDS YP_001093737.1 127512540 4924365 complement(1842682..1844130) 1 NC_009092.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1844130 sbcB 4924365 sbcB Shewanella loihica PV-4 exonuclease I YP_001093737.1 1842682 R 323850 CDS YP_001093738.1 127512541 4924366 1844259..1845077 1 NC_009092.1 KEGG: she:Shewmr4_2409 hypothetical protein; hypothetical protein 1845077 4924366 Shew_1612 Shewanella loihica PV-4 hypothetical protein YP_001093738.1 1844259 D 323850 CDS YP_001093739.1 127512542 4922460 1845113..1845925 1 NC_009092.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1845925 rrmA 4922460 rrmA Shewanella loihica PV-4 23S rRNA methyltransferase A YP_001093739.1 1845113 D 323850 CDS YP_001093740.1 127512543 4922779 1846228..1846434 1 NC_009092.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2477 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 1846434 4922779 Shew_1614 Shewanella loihica PV-4 cold-shock DNA-binding domain-containing protein YP_001093740.1 1846228 D 323850 CDS YP_001093741.1 127512544 4922905 complement(1846913..1847818) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_1627 ABC transporter-related protein; ABC transporter-like protein 1847818 4922905 Shew_1615 Shewanella loihica PV-4 ABC transporter-like protein YP_001093741.1 1846913 R 323850 CDS YP_001093742.1 127512545 4922906 complement(1847815..1848669) 1 NC_009092.1 KEGG: son:SO1866 hypothetical protein; hypothetical protein 1848669 4922906 Shew_1616 Shewanella loihica PV-4 hypothetical protein YP_001093742.1 1847815 R 323850 CDS YP_001093743.1 127512546 4923400 complement(1848726..1849373) 1 NC_009092.1 PFAM: protein of unknown function DUF480; KEGG: she:Shewmr4_1554 protein of unknown function DUF480; hypothetical protein 1849373 4923400 Shew_1617 Shewanella loihica PV-4 hypothetical protein YP_001093743.1 1848726 R 323850 CDS YP_001093744.1 127512547 4923148 complement(1849473..1850306) 1 NC_009092.1 KEGG: she:Shewmr4_1555 hypothetical protein; hypothetical protein 1850306 4923148 Shew_1618 Shewanella loihica PV-4 hypothetical protein YP_001093744.1 1849473 R 323850 CDS YP_001093745.1 127512548 4922250 1850856..1852769 1 NC_009092.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1852769 4922250 Shew_1619 Shewanella loihica PV-4 arginine decarboxylase YP_001093745.1 1850856 D 323850 CDS YP_001093746.1 127512549 4922061 1853026..1853946 1 NC_009092.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: sfr:Sfri_1699 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase 1853946 4922061 Shew_1620 Shewanella loihica PV-4 adenosylmethionine decarboxylase YP_001093746.1 1853026 D 323850 CDS YP_001093747.1 127512550 4922062 1853975..1854898 1 NC_009092.1 catalyzes the formation of putrescine from agmatine; agmatinase 1854898 4922062 Shew_1621 Shewanella loihica PV-4 agmatinase YP_001093747.1 1853975 D 323850 CDS YP_001093748.1 127512551 4921539 1854926..1855582 1 NC_009092.1 KEGG: sfr:Sfri_1702 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 1855582 4921539 Shew_1622 Shewanella loihica PV-4 pyridoxamine 5'-phosphate oxidase YP_001093748.1 1854926 D 323850 CDS YP_001093749.1 127512552 4922772 complement(1855648..1856424) 1 NC_009092.1 KEGG: shm:Shewmr7_1661 hypothetical protein; hypothetical protein 1856424 4922772 Shew_1623 Shewanella loihica PV-4 hypothetical protein YP_001093749.1 1855648 R 323850 CDS YP_001093750.1 127512553 4923251 1856663..1857637 1 NC_009092.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1857637 cysB 4923251 cysB Shewanella loihica PV-4 transcriptional regulator CysB YP_001093750.1 1856663 D 323850 CDS YP_001093751.1 127512554 4923252 complement(1857730..1859106) 1 NC_009092.1 KEGG: shm:Shewmr7_1804 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1859106 4923252 Shew_1625 Shewanella loihica PV-4 L-serine dehydratase 1 YP_001093751.1 1857730 R 323850 CDS YP_001093752.1 127512555 4922156 1859477..1860478 1 NC_009092.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1860478 4922156 Shew_1626 Shewanella loihica PV-4 beta-hexosaminidase YP_001093752.1 1859477 D 323850 CDS YP_001093753.1 127512556 4922414 1860554..1861096 1 NC_009092.1 PFAM: protein of unknown function UPF0227; KEGG: shm:Shewmr7_1806 protein of unknown function UPF0227; hypothetical protein 1861096 4922414 Shew_1627 Shewanella loihica PV-4 hypothetical protein YP_001093753.1 1860554 D 323850 CDS YP_001093754.1 127512557 4923207 1861653..1861922 1 NC_009092.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1861922 4923207 Shew_1628 Shewanella loihica PV-4 acylphosphatase YP_001093754.1 1861653 D 323850 CDS YP_001093755.1 127512558 4923472 complement(1861962..1862900) 1 NC_009092.1 KEGG: sfr:Sfri_2400 hypothetical protein; hypothetical protein 1862900 4923472 Shew_1629 Shewanella loihica PV-4 hypothetical protein YP_001093755.1 1861962 R 323850 CDS YP_001093756.1 127512559 4923473 complement(1862893..1866375) 1 NC_009092.1 KEGG: she:Shewmr4_1730 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 1866375 4923473 Shew_1630 Shewanella loihica PV-4 transcription-repair coupling factor YP_001093756.1 1862893 R 323850 CDS YP_001093757.1 127512560 4921664 complement(1866451..1867032) 1 NC_009092.1 KEGG: shm:Shewmr7_1811 hypothetical protein; hypothetical protein 1867032 4921664 Shew_1631 Shewanella loihica PV-4 hypothetical protein YP_001093757.1 1866451 R 323850 CDS YP_001093758.1 127512561 4922100 1867128..1868360 1 NC_009092.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_1812 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1868360 4922100 Shew_1632 Shewanella loihica PV-4 LolC/E family lipoprotein releasing system, transmembrane protein YP_001093758.1 1867128 D 323850 CDS YP_001093759.1 127512562 4922330 1868364..1869065 1 NC_009092.1 KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-related protein; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1869065 4922330 Shew_1633 Shewanella loihica PV-4 lipoprotein releasing system, ATP-binding protein YP_001093759.1 1868364 D 323850 CDS YP_001093760.1 127512563 4922331 1869062..1870315 1 NC_009092.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative; LolC/E family lipoprotein releasing system, transmembrane protein 1870315 4922331 Shew_1634 Shewanella loihica PV-4 LolC/E family lipoprotein releasing system, transmembrane protein YP_001093760.1 1869062 D 323850 CDS YP_001093761.1 127512564 4922117 complement(1870343..1871698) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; KEGG: vch:VCA0960 GGDEF family protein; diguanylate cyclase 1871698 4922117 Shew_1635 Shewanella loihica PV-4 diguanylate cyclase YP_001093761.1 1870343 R 323850 CDS YP_001093762.1 127512565 4922777 complement(1872031..1872537) 1 NC_009092.1 KEGG: shm:Shewmr7_2494 hypothetical protein; hypothetical protein 1872537 4922777 Shew_1636 Shewanella loihica PV-4 hypothetical protein YP_001093762.1 1872031 R 323850 CDS YP_001093763.1 127512566 4923393 1872569..1874854 1 NC_009092.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: she:Shewmr4_2423 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1874854 4923393 Shew_1637 Shewanella loihica PV-4 DNA internalization-related competence protein ComEC/Rec2 YP_001093763.1 1872569 D 323850 CDS YP_001093764.1 127512567 4923232 1874888..1876702 1 NC_009092.1 KEGG: shm:Shewmr7_2492 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter-related protein; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 1876702 4923232 Shew_1638 Shewanella loihica PV-4 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_001093764.1 1874888 D 323850 CDS YP_001093765.1 127512568 4923233 1876708..1877724 1 NC_009092.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1877724 lpxK 4923233 lpxK Shewanella loihica PV-4 tetraacyldisaccharide 4'-kinase YP_001093765.1 1876708 D 323850 CDS YP_001093766.1 127512569 4922600 1877726..1877905 1 NC_009092.1 PFAM: protein of unknown function DUF343; KEGG: shm:Shewmr7_2490 protein of unknown function DUF343; hypothetical protein 1877905 4922600 Shew_1640 Shewanella loihica PV-4 hypothetical protein YP_001093766.1 1877726 D 323850 CDS YP_001093767.1 127512570 4923681 1878141..1878860 1 NC_009092.1 KEGG: sfr:Sfri_2385 Mn2+-dependent serine/threonine protein kinase; Mn2+-dependent serine/threonine protein kinase 1878860 4923681 Shew_1641 Shewanella loihica PV-4 Mn2+-dependent serine/threonine protein kinase YP_001093767.1 1878141 D 323850 CDS YP_001093768.1 127512571 4923972 1879360..1882428 1 NC_009092.1 PFAM: Peptidase M11, gametolysin; KEGG: vpa:VPA0993 hypothetical protein; peptidase M11, gametolysin 1882428 4923972 Shew_1642 Shewanella loihica PV-4 peptidase M11, gametolysin YP_001093768.1 1879360 D 323850 CDS YP_001093769.1 127512572 4923973 complement(1882512..1884800) 1 NC_009092.1 KEGG: vpa:VPA0992 hypothetical protein; hypothetical protein 1884800 4923973 Shew_1643 Shewanella loihica PV-4 hypothetical protein YP_001093769.1 1882512 R 323850 CDS YP_001093770.1 127512573 4922362 complement(1885352..1886140) 1 NC_009092.1 PFAM: DSBA oxidoreductase; KEGG: vpa:VPA0994 hypothetical protein; DSBA oxidoreductase 1886140 4922362 Shew_1644 Shewanella loihica PV-4 DSBA oxidoreductase YP_001093770.1 1885352 R 323850 CDS YP_001093771.1 127512574 4921151 complement(1886174..1887544) 1 NC_009092.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: shm:Shewmr7_3505 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1887544 4921151 Shew_1645 Shewanella loihica PV-4 sigma-54 dependent trancsriptional regulator YP_001093771.1 1886174 R 323850 CDS YP_001093772.1 127512575 4920978 complement(1888021..1888899) 1 NC_009092.1 PFAM: beta-lactamase domain protein; KEGG: sdn:Sden_2195 beta-lactamase-like protein; beta-lactamase domain-containing protein 1888899 4920978 Shew_1646 Shewanella loihica PV-4 beta-lactamase domain-containing protein YP_001093772.1 1888021 R 323850 CDS YP_001093773.1 127512576 4921206 complement(1889011..1892058) 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1627 acriflavin resistance protein; acriflavin resistance protein 1892058 4921206 Shew_1647 Shewanella loihica PV-4 acriflavin resistance protein YP_001093773.1 1889011 R 323850 CDS YP_001093774.1 127512577 4921207 complement(1892055..1895303) 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1628 acriflavin resistance protein; acriflavin resistance protein 1895303 4921207 Shew_1648 Shewanella loihica PV-4 acriflavin resistance protein YP_001093774.1 1892055 R 323850 CDS YP_001093775.1 127512578 4922118 complement(1895318..1896382) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: she:Shewmr4_1629 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1896382 4922118 Shew_1649 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001093775.1 1895318 R 323850 CDS YP_001093776.1 127512579 4921802 complement(1897131..1898417) 1 NC_009092.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1898417 gltA 4921802 gltA Shewanella loihica PV-4 type II citrate synthase YP_001093776.1 1897131 R 323850 CDS YP_001093777.1 127512580 4923270 1898830..1899225 1 NC_009092.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: shm:Shewmr7_1706 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 1899225 4923270 Shew_1651 Shewanella loihica PV-4 succinate dehydrogenase, cytochrome b subunit YP_001093777.1 1898830 D 323850 CDS YP_001093778.1 127512581 4923271 1899219..1899566 1 NC_009092.1 KEGG: she:Shewmr4_1632 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; putative succinate dehydrogenase, hydrophobic subunit 1899566 4923271 Shew_1652 Shewanella loihica PV-4 putative succinate dehydrogenase, hydrophobic subunit YP_001093778.1 1899219 D 323850 CDS YP_001093779.1 127512582 4921622 1899567..1901333 1 NC_009092.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1901333 sdhA 4921622 sdhA Shewanella loihica PV-4 succinate dehydrogenase flavoprotein subunit YP_001093779.1 1899567 D 323850 CDS YP_001093780.1 127512583 4922731 1901344..1902051 1 NC_009092.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1902051 sdhB 4922731 sdhB Shewanella loihica PV-4 succinate dehydrogenase iron-sulfur subunit YP_001093780.1 1901344 D 323850 CDS YP_001093781.1 127512584 4921041 1902267..1905089 1 NC_009092.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1905089 sucA 4921041 sucA Shewanella loihica PV-4 2-oxoglutarate dehydrogenase E1 component YP_001093781.1 1902267 D 323850 CDS YP_001093782.1 127512585 4920807 1905122..1906312 1 NC_009092.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1711 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 1906312 4920807 Shew_1656 Shewanella loihica PV-4 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_001093782.1 1905122 D 323850 CDS YP_001093783.1 127512586 4920808 1906416..1907582 1 NC_009092.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1907582 sucC 4920808 sucC Shewanella loihica PV-4 succinyl-CoA synthetase subunit beta YP_001093783.1 1906416 D 323850 CDS YP_001093784.1 127512587 4921421 1907582..1908454 1 NC_009092.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sdn:Sden_2180 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 1908454 4921421 Shew_1658 Shewanella loihica PV-4 succinyl-CoA synthetase subunit alpha YP_001093784.1 1907582 D 323850 CDS YP_001093785.1 127512588 4921954 complement(1908540..1910213) 1 NC_009092.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: cps:CPS_3206 glutamate synthase domain protein; ferredoxin-dependent glutamate synthase 1910213 4921954 Shew_1659 Shewanella loihica PV-4 ferredoxin-dependent glutamate synthase YP_001093785.1 1908540 R 323850 CDS YP_001093786.1 127512589 4922221 1910434..1910934 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1715 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1910934 4922221 Shew_1660 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093786.1 1910434 D 323850 CDS YP_001093787.1 127512590 4922222 complement(1911025..1911456) 1 NC_009092.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 1911456 fur 4922222 fur Shewanella loihica PV-4 ferric uptake regulator YP_001093787.1 1911025 R 323850 CDS YP_001093788.1 127512591 4922716 1911767..1912513 1 NC_009092.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1912513 4922716 Shew_1662 Shewanella loihica PV-4 NAD-dependent deacetylase YP_001093788.1 1911767 D 323850 CDS YP_001093789.1 127512592 4923419 1912571..1913092 1 NC_009092.1 KEGG: she:Shewmr4_1643 hypothetical protein; hypothetical protein 1913092 4923419 Shew_1663 Shewanella loihica PV-4 hypothetical protein YP_001093789.1 1912571 D 323850 CDS YP_001093790.1 127512593 4923529 1913133..1913420 1 NC_009092.1 KEGG: ppr:PBPRB1101 hypothetical protein; hypothetical protein 1913420 4923529 Shew_1664 Shewanella loihica PV-4 hypothetical protein YP_001093790.1 1913133 D 323850 CDS YP_001093791.1 127512594 4924008 1913516..1914202 1 NC_009092.1 PFAM: peptidase S51, dipeptidase E; KEGG: sbo:SBO_4042 peptidase E; peptidase S51, dipeptidase E 1914202 4924008 Shew_1665 Shewanella loihica PV-4 peptidase S51, dipeptidase E YP_001093791.1 1913516 D 323850 CDS YP_001093792.1 127512595 4924009 complement(1914214..1915551) 1 NC_009092.1 PFAM: putative esterase; KEGG: sdn:Sden_0711 putative esterase; putative esterase 1915551 4924009 Shew_1666 Shewanella loihica PV-4 putative esterase YP_001093792.1 1914214 R 323850 CDS YP_001093793.1 127512596 4920549 1915940..1917130 1 NC_009092.1 KEGG: sdn:Sden_1943 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; acetyl-CoA acetyltransferase 1917130 4920549 Shew_1667 Shewanella loihica PV-4 acetyl-CoA acetyltransferase YP_001093793.1 1915940 D 323850 CDS YP_001093794.1 127512597 4920541 1917266..1918771 1 NC_009092.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1918771 4920541 Shew_1668 Shewanella loihica PV-4 methylmalonate-semialdehyde dehydrogenase YP_001093794.1 1917266 D 323850 CDS YP_001093795.1 127512598 4920536 1918934..1920091 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2662 acyl-CoA dehydrogenase domain protein; butyryl-CoA dehydrogenase 1920091 4920536 Shew_1669 Shewanella loihica PV-4 butyryl-CoA dehydrogenase YP_001093795.1 1918934 D 323850 CDS YP_001093796.1 127512599 4920537 1920107..1920880 1 NC_009092.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1920880 4920537 Shew_1670 Shewanella loihica PV-4 enoyl-CoA hydratase YP_001093796.1 1920107 D 323850 CDS YP_001093797.1 127512600 4920529 1920880..1922010 1 NC_009092.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2660 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1922010 4920529 Shew_1671 Shewanella loihica PV-4 enoyl-CoA hydratase/isomerase YP_001093797.1 1920880 D 323850 CDS YP_001093798.1 127512601 4920521 1922046..1922945 1 NC_009092.1 KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1922945 4920521 Shew_1672 Shewanella loihica PV-4 3-hydroxyisobutyrate dehydrogenase YP_001093798.1 1922046 D 323850 CDS YP_001093799.1 127512602 4920516 1922950..1923708 1 NC_009092.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1923708 fabG 4920516 fabG Shewanella loihica PV-4 3-ketoacyl-ACP reductase YP_001093799.1 1922950 D 323850 CDS YP_001093800.1 127512603 4920506 1923822..1924079 1 NC_009092.1 KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein 1924079 4920506 Shew_1674 Shewanella loihica PV-4 hypothetical protein YP_001093800.1 1923822 D 323850 CDS YP_001093801.1 127512604 4920507 1924089..1926140 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: shm:Shewmr7_2656 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 1926140 4920507 Shew_1675 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001093801.1 1924089 D 323850 CDS YP_001093802.1 127512605 4920498 1926354..1927949 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2586 ABC transporter-related protein; ABC transporter-like protein 1927949 4920498 Shew_1676 Shewanella loihica PV-4 ABC transporter-like protein YP_001093802.1 1926354 D 323850 CDS YP_001093803.1 127512606 4920490 complement(1928104..1929465) 1 NC_009092.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: cps:CPS_4956 cytosol aminopeptidase family protein; leucyl aminopeptidase 1929465 4920490 Shew_1677 Shewanella loihica PV-4 leucyl aminopeptidase YP_001093803.1 1928104 R 323850 CDS YP_001093804.1 127512607 4920482 complement(1929538..1929966) 1 NC_009092.1 KEGG: pha:PSHAb0301 hypothetical protein; hypothetical protein 1929966 4920482 Shew_1678 Shewanella loihica PV-4 hypothetical protein YP_001093804.1 1929538 R 323850 CDS YP_001093805.1 127512608 4920483 complement(1930027..1930584) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: vpa:VPA1562 putative transcriptional regulator; TetR family transcriptional regulator 1930584 4920483 Shew_1679 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001093805.1 1930027 R 323850 CDS YP_001093806.1 127512609 4920477 1930713..1931183 1 NC_009092.1 PFAM: HPP family protein+B94; KEGG: vpa:VPA1561 hypothetical protein; HPP family protein 1931183 4920477 Shew_1680 Shewanella loihica PV-4 HPP family protein YP_001093806.1 1930713 D 323850 CDS YP_001093807.1 127512610 4920472 1931402..1932892 1 NC_009092.1 KEGG: tcx:Tcr_0379 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1932892 4920472 Shew_1681 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase YP_001093807.1 1931402 D 323850 CDS YP_001093808.1 127512611 4920463 complement(1932935..1933699) 1 NC_009092.1 PFAM: ribonuclease H; KEGG: sdn:Sden_0758 ribonuclease H; ribonuclease H 1933699 4920463 Shew_1682 Shewanella loihica PV-4 ribonuclease H YP_001093808.1 1932935 R 323850 CDS YP_001093809.1 127512612 4920453 complement(1933730..1934305) 1 NC_009092.1 PFAM: protein of unknown function DUF1415; KEGG: sfr:Sfri_1353 protein of unknown function DUF1415; hypothetical protein 1934305 4920453 Shew_1683 Shewanella loihica PV-4 hypothetical protein YP_001093809.1 1933730 R 323850 CDS YP_001093810.1 127512613 4920454 complement(1934337..1934933) 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sdn:Sden_2232 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1934933 4920454 Shew_1684 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001093810.1 1934337 R 323850 CDS YP_001093811.1 127512614 4920448 1935281..1938187 1 NC_009092.1 PFAM: peptidase domain protein; Peptidase M9A, collagenase C-terminal domain protein; Peptidase M9, N-terminal domain; KEGG: son:SO0639 collagenase family; collagenase 1938187 4920448 Shew_1685 Shewanella loihica PV-4 collagenase YP_001093811.1 1935281 D 323850 CDS YP_001093812.1 127512615 4920441 1938497..1939174 1 NC_009092.1 KEGG: shm:Shewmr7_2633 hypothetical protein; hypothetical protein 1939174 4920441 Shew_1686 Shewanella loihica PV-4 hypothetical protein YP_001093812.1 1938497 D 323850 CDS YP_001093813.1 127512616 4920432 1939503..1940006 1 NC_009092.1 KEGG: vpa:VPA0219 hypothetical protein; hypothetical protein 1940006 4920432 Shew_1687 Shewanella loihica PV-4 hypothetical protein YP_001093813.1 1939503 D 323850 CDS YP_001093814.1 127512617 4920433 complement(1940184..1942316) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_0392 TonB-dependent receptor, plug; TonB-dependent receptor 1942316 4920433 Shew_1688 Shewanella loihica PV-4 TonB-dependent receptor YP_001093814.1 1940184 R 323850 CDS YP_001093815.1 127512618 4920425 complement(1942663..1943484) 1 NC_009092.1 KEGG: shm:Shewmr7_2631 hypothetical protein; hypothetical protein 1943484 4920425 Shew_1689 Shewanella loihica PV-4 hypothetical protein YP_001093815.1 1942663 R 323850 CDS YP_001093816.1 127512619 4920420 1944445..1945332 1 NC_009092.1 hypothetical protein 1945332 4920420 Shew_1690 Shewanella loihica PV-4 hypothetical protein YP_001093816.1 1944445 D 323850 CDS YP_001093817.1 127512620 4920602 1945421..1945909 1 NC_009092.1 hypothetical protein 1945909 4920602 Shew_1691 Shewanella loihica PV-4 hypothetical protein YP_001093817.1 1945421 D 323850 CDS YP_001093818.1 127512621 4920616 1946022..1946534 1 NC_009092.1 hypothetical protein 1946534 4920616 Shew_1692 Shewanella loihica PV-4 hypothetical protein YP_001093818.1 1946022 D 323850 CDS YP_001093819.1 127512622 4920617 1946595..1947542 1 NC_009092.1 KEGG: sma:SAV3995 hypothetical protein; hypothetical protein 1947542 4920617 Shew_1693 Shewanella loihica PV-4 hypothetical protein YP_001093819.1 1946595 D 323850 CDS YP_001093820.1 127512623 4920655 1948145..1948657 1 NC_009092.1 hypothetical protein 1948657 4920655 Shew_1694 Shewanella loihica PV-4 hypothetical protein YP_001093820.1 1948145 D 323850 CDS YP_001093821.1 127512624 4920690 1948750..1949097 1 NC_009092.1 hypothetical protein 1949097 4920690 Shew_1695 Shewanella loihica PV-4 hypothetical protein YP_001093821.1 1948750 D 323850 CDS YP_001093822.1 127512625 4920724 1949748..1950644 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_2629 protein of unknown function DUF6, transmembrane; hypothetical protein 1950644 4920724 Shew_1696 Shewanella loihica PV-4 hypothetical protein YP_001093822.1 1949748 D 323850 CDS YP_001093823.1 127512626 4920725 complement(1950696..1951193) 1 NC_009092.1 PFAM: amino acid-binding ACT domain protein; KEGG: she:Shewmr4_2561 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 1951193 4920725 Shew_1697 Shewanella loihica PV-4 amino acid-binding ACT domain-containing protein YP_001093823.1 1950696 R 323850 CDS YP_001093824.1 127512627 4920787 1951473..1953731 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2560 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1953731 4920787 Shew_1698 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001093824.1 1951473 D 323850 CDS YP_001093825.1 127512628 4920784 1953792..1955444 1 NC_009092.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2626 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 1955444 4920784 Shew_1699 Shewanella loihica PV-4 phosphate ABC transporter permease YP_001093825.1 1953792 D 323850 CDS YP_001093826.1 127512629 4920819 1955522..1956340 1 NC_009092.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1956340 4920819 Shew_1700 Shewanella loihica PV-4 phosphate transporter ATP-binding protein YP_001093826.1 1955522 D 323850 CDS YP_001093827.1 127512630 4920836 1956389..1957090 1 NC_009092.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1957090 4920836 Shew_1701 Shewanella loihica PV-4 transcriptional regulator PhoU YP_001093827.1 1956389 D 323850 CDS YP_001093828.1 127512631 4920837 1957602..1957907 1 NC_009092.1 PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 1957907 4920837 Shew_1702 Shewanella loihica PV-4 hypothetical protein YP_001093828.1 1957602 D 323850 CDS YP_001093829.1 127512632 4920860 1957950..1958477 1 NC_009092.1 hypothetical protein 1958477 4920860 Shew_1703 Shewanella loihica PV-4 hypothetical protein YP_001093829.1 1957950 D 323850 CDS YP_001093830.1 127512633 4920876 1958821..1959285 1 NC_009092.1 hypothetical protein 1959285 4920876 Shew_1704 Shewanella loihica PV-4 hypothetical protein YP_001093830.1 1958821 D 323850 CDS YP_001093831.1 127512634 4921390 1959298..1959663 1 NC_009092.1 KEGG: hch:HCH_03896 hypothetical protein; hypothetical protein 1959663 4921390 Shew_1705 Shewanella loihica PV-4 hypothetical protein YP_001093831.1 1959298 D 323850 CDS YP_001093832.1 127512635 4921391 1959756..1960148 1 NC_009092.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vvu:VV21212 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1960148 4921391 Shew_1706 Shewanella loihica PV-4 glutathione-dependent formaldehyde-activating protein YP_001093832.1 1959756 D 323850 CDS YP_001093833.1 127512636 4921484 1960484..1961410 1 NC_009092.1 hypothetical protein 1961410 4921484 Shew_1707 Shewanella loihica PV-4 hypothetical protein YP_001093833.1 1960484 D 323850 CDS YP_001093834.1 127512637 4921699 1961524..1962102 1 NC_009092.1 PFAM: protein of unknown function UPF0157; KEGG: cps:CPS_2738 hypothetical protein; hypothetical protein 1962102 4921699 Shew_1708 Shewanella loihica PV-4 hypothetical protein YP_001093834.1 1961524 D 323850 CDS YP_001093835.1 127512638 4921932 1962233..1962598 1 NC_009092.1 SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein 1962598 4921932 Shew_1709 Shewanella loihica PV-4 hypothetical protein YP_001093835.1 1962233 D 323850 CDS YP_001093836.1 127512639 4921951 complement(1962609..1962854) 1 NC_009092.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein; hypothetical protein 1962854 4921951 Shew_1710 Shewanella loihica PV-4 hypothetical protein YP_001093836.1 1962609 R 323850 CDS YP_001093837.1 127512640 4921952 1963016..1964173 1 NC_009092.1 KEGG: ppr:PBPRB1467 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 1964173 4921952 Shew_1711 Shewanella loihica PV-4 methyl-accepting chemotaxis protein YP_001093837.1 1963016 D 323850 CDS YP_001093838.1 127512641 4921973 1964325..1965611 1 NC_009092.1 KEGG: she:Shewmr4_2549 hypothetical protein; hypothetical protein 1965611 4921973 Shew_1712 Shewanella loihica PV-4 hypothetical protein YP_001093838.1 1964325 D 323850 CDS YP_001093839.1 127512642 4921923 1965922..1966971 1 NC_009092.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1966971 4921923 Shew_1713 Shewanella loihica PV-4 3-oxoacyl-ACP synthase YP_001093839.1 1965922 D 323850 CDS YP_001093840.1 127512643 4922223 1967062..1967934 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: ppr:PBPRA1463 putative haloalkane dehalogenase; alpha/beta hydrolase 1967934 4922223 Shew_1714 Shewanella loihica PV-4 alpha/beta hydrolase YP_001093840.1 1967062 D 323850 CDS YP_001093841.1 127512644 4922224 1967988..1969679 1 NC_009092.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1969679 4922224 Shew_1715 Shewanella loihica PV-4 peptide synthase YP_001093841.1 1967988 D 323850 CDS YP_001093842.1 127512645 4922364 1969686..1970807 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ppr:PBPRA1465 steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase 1970807 4922364 Shew_1716 Shewanella loihica PV-4 3-beta hydroxysteroid dehydrogenase/isomerase YP_001093842.1 1969686 D 323850 CDS YP_001093843.1 127512646 4922455 complement(1970838..1971260) 1 NC_009092.1 PFAM: globin; KEGG: cvi:CV2936 probable bacterial hemoglobin; globin 1971260 4922455 Shew_1717 Shewanella loihica PV-4 globin YP_001093843.1 1970838 R 323850 CDS YP_001093844.1 127512647 4922564 complement(1971424..1972764) 1 NC_009092.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: shm:Shewmr7_2432 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1972764 4922564 Shew_1718 Shewanella loihica PV-4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001093844.1 1971424 R 323850 CDS YP_001093845.1 127512648 4922889 1972914..1973966 1 NC_009092.1 KEGG: shm:Shewmr7_2431 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 1973966 4922889 Shew_1719 Shewanella loihica PV-4 biotin synthase YP_001093845.1 1972914 D 323850 CDS YP_001093846.1 127512649 4922890 1973989..1975137 1 NC_009092.1 PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 1975137 4922890 Shew_1720 Shewanella loihica PV-4 8-amino-7-oxononanoate synthase YP_001093846.1 1973989 D 323850 CDS YP_001093847.1 127512650 4922998 1975224..1976153 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; type 11 methyltransferase 1976153 4922998 Shew_1721 Shewanella loihica PV-4 type 11 methyltransferase YP_001093847.1 1975224 D 323850 CDS YP_001093848.1 127512651 4923084 1976169..1976882 1 NC_009092.1 TIGRFAM: dethiobiotin synthase; KEGG: she:Shewmr4_2356 dethiobiotin synthase; dethiobiotin synthase 1976882 4923084 Shew_1722 Shewanella loihica PV-4 dethiobiotin synthase YP_001093848.1 1976169 D 323850 CDS YP_001093849.1 127512652 4922838 1977199..1978062 1 NC_009092.1 putative metalloprotease; heat shock protein HtpX 1978062 4922838 Shew_1723 Shewanella loihica PV-4 heat shock protein HtpX YP_001093849.1 1977199 D 323850 CDS YP_001093850.1 127512653 4922839 1978401..1978751 1 NC_009092.1 KEGG: shm:Shewmr7_2388 cytochrome c3; cytochrome c3 1978751 4922839 Shew_1724 Shewanella loihica PV-4 cytochrome c3 YP_001093850.1 1978401 D 323850 CDS YP_001093851.1 127512654 4923234 1979156..1979707 1 NC_009092.1 PFAM: Curlin associated repeat protein; KEGG: sfr:Sfri_1515 curlin associated repeat protein; curlin-associated protein 1979707 4923234 Shew_1725 Shewanella loihica PV-4 curlin-associated protein YP_001093851.1 1979156 D 323850 CDS YP_001093852.1 127512655 4923262 1979869..1980495 1 NC_009092.1 PFAM: regulatory protein, LuxR; KEGG: sfr:Sfri_1517 transcriptional regulator, LuxR family protein; LuxR family transcriptional regulator 1980495 4923262 Shew_1726 Shewanella loihica PV-4 LuxR family transcriptional regulator YP_001093852.1 1979869 D 323850 CDS YP_001093853.1 127512656 4923370 1980492..1980959 1 NC_009092.1 KEGG: sfr:Sfri_1518 hypothetical protein; hypothetical protein 1980959 4923370 Shew_1727 Shewanella loihica PV-4 hypothetical protein YP_001093853.1 1980492 D 323850 CDS YP_001093854.1 127512657 4923468 1980974..1981393 1 NC_009092.1 KEGG: sfr:Sfri_1519 curli production assembly/transport component CsgF precursor; curli production assembly/transport component CsgF 1981393 4923468 Shew_1728 Shewanella loihica PV-4 curli production assembly/transport component CsgF YP_001093854.1 1980974 D 323850 CDS YP_001093855.1 127512658 4923469 1981396..1982244 1 NC_009092.1 PFAM: Curli production assembly/transport component CsgG; KEGG: sfr:Sfri_1520 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 1982244 4923469 Shew_1729 Shewanella loihica PV-4 curli production assembly/transport component CsgG YP_001093855.1 1981396 D 323850 CDS YP_001093856.1 127512659 4923518 1982460..1983026 1 NC_009092.1 hypothetical protein 1983026 4923518 Shew_1730 Shewanella loihica PV-4 hypothetical protein YP_001093856.1 1982460 D 323850 CDS YP_001093857.1 127512660 4923539 1983289..1983639 1 NC_009092.1 PFAM: histidine triad (HIT) protein; KEGG: sfr:Sfri_1522 histidine triad (HIT) protein; histidine triad (HIT) protein 1983639 4923539 Shew_1731 Shewanella loihica PV-4 histidine triad (HIT) protein YP_001093857.1 1983289 D 323850 CDS YP_001093858.1 127512661 4923676 1983670..1984167 1 NC_009092.1 TIGRFAM: uncharacterized domain 1 protein; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein; hypothetical protein 1984167 4923676 Shew_1732 Shewanella loihica PV-4 hypothetical protein YP_001093858.1 1983670 D 323850 CDS YP_001093859.1 127512662 4923677 1984164..1984628 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2382 thioesterase superfamily protein; thioesterase superfamily protein 1984628 4923677 Shew_1733 Shewanella loihica PV-4 thioesterase superfamily protein YP_001093859.1 1984164 D 323850 CDS YP_001093860.1 127512663 4923715 1984659..1985048 1 NC_009092.1 PFAM: protein of unknown function DUF1425; KEGG: sfr:Sfri_1525 protein of unknown function DUF1425; hypothetical protein 1985048 4923715 Shew_1734 Shewanella loihica PV-4 hypothetical protein YP_001093860.1 1984659 D 323850 CDS YP_001093861.1 127512664 4923745 1985370..1987511 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2310 TonB-dependent receptor; TonB-dependent receptor 1987511 4923745 Shew_1735 Shewanella loihica PV-4 TonB-dependent receptor YP_001093861.1 1985370 D 323850 CDS YP_001093862.1 127512665 4923805 1987576..1987836 1 NC_009092.1 KEGG: son:SO2714 hypothetical protein; hypothetical protein 1987836 4923805 Shew_1736 Shewanella loihica PV-4 hypothetical protein YP_001093862.1 1987576 D 323850 CDS YP_001093863.1 127512666 4923836 1987880..1988527 1 NC_009092.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative; nicotinamide mononucleotide transporter PnuC 1988527 4923836 Shew_1737 Shewanella loihica PV-4 nicotinamide mononucleotide transporter PnuC YP_001093863.1 1987880 D 323850 CDS YP_001093864.1 127512667 4923837 1988567..1989706 1 NC_009092.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: sdn:Sden_2318 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1989706 4923837 Shew_1738 Shewanella loihica PV-4 aminoglycoside phosphotransferase YP_001093864.1 1988567 D 323850 CDS YP_001093865.1 127512668 4923903 1989977..1990567 1 NC_009092.1 PFAM: DoxX family protein; KEGG: sfr:Sfri_1531 DoxX family protein; DoxX family protein 1990567 4923903 Shew_1739 Shewanella loihica PV-4 DoxX family protein YP_001093865.1 1989977 D 323850 CDS YP_001093866.1 127512669 4923933 1990663..1991211 1 NC_009092.1 PFAM: nitroreductase; KEGG: sfr:Sfri_1532 nitroreductase; nitroreductase 1991211 4923933 Shew_1740 Shewanella loihica PV-4 nitroreductase YP_001093866.1 1990663 D 323850 CDS YP_001093867.1 127512670 4923968 complement(1991469..1992200) 1 NC_009092.1 PFAM: beta-lactamase domain protein; KEGG: vvy:VV2889 uncharacterized flavoprotein; beta-lactamase domain-containing protein 1992200 4923968 Shew_1741 Shewanella loihica PV-4 beta-lactamase domain-containing protein YP_001093867.1 1991469 R 323850 CDS YP_001093868.1 127512671 4923969 complement(1992241..1992858) 1 NC_009092.1 KEGG: vvy:VV2888 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 1992858 4923969 Shew_1742 Shewanella loihica PV-4 methyl-accepting chemotaxis protein YP_001093868.1 1992241 R 323850 CDS YP_001093869.1 127512672 4923974 1992935..1993438 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2707 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1993438 4923974 Shew_1743 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093869.1 1992935 D 323850 CDS YP_001093870.1 127512673 4924003 1993686..1994291 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1594 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1994291 4924003 Shew_1744 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093870.1 1993686 D 323850 CDS YP_001093871.1 127512674 4924044 1994318..1994770 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1595 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1994770 4924044 Shew_1745 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001093871.1 1994318 D 323850 CDS YP_001093872.1 127512675 4924099 1994818..1995216 1 NC_009092.1 KEGG: shm:Shewmr7_1596 hypothetical protein; hypothetical protein 1995216 4924099 Shew_1746 Shewanella loihica PV-4 hypothetical protein YP_001093872.1 1994818 D 323850 CDS YP_001093873.1 127512676 4924100 1995352..1995741 1 NC_009092.1 KEGG: she:Shewmr4_1530 hypothetical protein; hypothetical protein 1995741 4924100 Shew_1747 Shewanella loihica PV-4 hypothetical protein YP_001093873.1 1995352 D 323850 CDS YP_001093874.1 127512677 4924109 complement(1996065..1996301) 1 NC_009092.1 hypothetical protein 1996301 4924109 Shew_1748 Shewanella loihica PV-4 hypothetical protein YP_001093874.1 1996065 R 323850 CDS YP_001093875.1 127512678 4924274 1997076..1998575 1 NC_009092.1 KEGG: vpa:VPA1301 hypothetical protein; hypothetical protein 1998575 4924274 Shew_1749 Shewanella loihica PV-4 hypothetical protein YP_001093875.1 1997076 D 323850 CDS YP_001093876.1 127512679 4921919 1999736..2001265 1 NC_009092.1 KEGG: she:Shewmr4_2329 hypothetical protein; hypothetical protein 2001265 4921919 Shew_1751 Shewanella loihica PV-4 hypothetical protein YP_001093876.1 1999736 D 323850 CDS YP_001093877.1 127512680 4921866 2001262..2005365 1 NC_009092.1 PFAM: Proprotein convertase, P; KEGG: she:Shewmr4_2330 hypothetical protein; proprotein convertase, P 2005365 4921866 Shew_1752 Shewanella loihica PV-4 proprotein convertase, P YP_001093877.1 2001262 D 323850 CDS YP_001093878.1 127512681 4923080 2005358..2005882 1 NC_009092.1 hypothetical protein 2005882 4923080 Shew_1753 Shewanella loihica PV-4 hypothetical protein YP_001093878.1 2005358 D 323850 CDS YP_001093879.1 127512682 4923140 complement(2006401..2006565) 1 NC_009092.1 KEGG: sfr:Sfri_2114 hypothetical protein; hypothetical protein 2006565 4923140 Shew_1754 Shewanella loihica PV-4 hypothetical protein YP_001093879.1 2006401 R 323850 CDS YP_001093880.1 127512683 4924070 complement(2006591..2006941) 1 NC_009092.1 PFAM: hydrogenase expression/synthesis, HypA; KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA; hydrogenase expression/synthesis, HypA 2006941 4924070 Shew_1755 Shewanella loihica PV-4 hydrogenase expression/synthesis, HypA YP_001093880.1 2006591 R 323850 CDS YP_001093881.1 127512684 4920950 complement(2006941..2007951) 1 NC_009092.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sfr:Sfri_2112 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2007951 4920950 Shew_1756 Shewanella loihica PV-4 hydrogenase expression/formation protein HypE YP_001093881.1 2006941 R 323850 CDS YP_001093882.1 127512685 4920951 complement(2007954..2009069) 1 NC_009092.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: shm:Shewmr7_2163 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD 2009069 4920951 Shew_1757 Shewanella loihica PV-4 hydrogenase expression/formation protein HypD YP_001093882.1 2007954 R 323850 CDS YP_001093883.1 127512686 4923187 complement(2009066..2009314) 1 NC_009092.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF 2009314 4923187 Shew_1758 Shewanella loihica PV-4 hydrogenase assembly chaperone HypC/HupF YP_001093883.1 2009066 R 323850 CDS YP_001093884.1 127512687 4921858 complement(2009317..2010150) 1 NC_009092.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: she:Shewmr4_1816 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2010150 4921858 Shew_1759 Shewanella loihica PV-4 hydrogenase nickel incorporation protein HypB YP_001093884.1 2009317 R 323850 CDS YP_001093885.1 127512688 4923210 complement(2010302..2012647) 1 NC_009092.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2012647 4923210 Shew_1760 Shewanella loihica PV-4 (NiFe) hydrogenase maturation protein HypF YP_001093885.1 2010302 R 323850 CDS YP_001093886.1 127512689 4923211 complement(2012673..2014460) 1 NC_009092.1 KEGG: she:Shewmr4_1818 hypothetical protein; hypothetical protein 2014460 4923211 Shew_1761 Shewanella loihica PV-4 hypothetical protein YP_001093886.1 2012673 R 323850 CDS YP_001093887.1 127512690 4920456 complement(2014441..2015004) 1 NC_009092.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: shm:Shewmr7_2158 hydrogenase expression/formation protein; hydrogenase expression/formation protein 2015004 4920456 Shew_1762 Shewanella loihica PV-4 hydrogenase expression/formation protein YP_001093887.1 2014441 R 323850 CDS YP_001093888.1 127512691 4920938 complement(2015016..2015687) 1 NC_009092.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: she:Shewmr4_1820 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2015687 4920938 Shew_1763 Shewanella loihica PV-4 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_001093888.1 2015016 R 323850 CDS YP_001093889.1 127512692 4923524 complement(2015698..2017404) 1 NC_009092.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: she:Shewmr4_1821 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit 2017404 4923524 Shew_1764 Shewanella loihica PV-4 nickel-dependent hydrogenase, large subunit YP_001093889.1 2015698 R 323850 CDS YP_001093890.1 127512693 4921459 complement(2017409..2018545) 1 NC_009092.1 KEGG: shm:Shewmr7_2155 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2018545 4921459 Shew_1765 Shewanella loihica PV-4 hydrogenase (NiFe) small subunit HydA YP_001093890.1 2017409 R 323850 CDS YP_001093891.1 127512694 4921460 2018888..2019304 1 NC_009092.1 PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein 2019304 4921460 Shew_1766 Shewanella loihica PV-4 signal transduction protein YP_001093891.1 2018888 D 323850 CDS YP_001093892.1 127512695 4922036 2019461..2023348 1 NC_009092.1 KEGG: shm:Shewmr7_2138 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 2023348 4922036 Shew_1767 Shewanella loihica PV-4 ATP-dependent helicase HrpA YP_001093892.1 2019461 D 323850 CDS YP_001093893.1 127512696 4922675 2023767..2023925 1 NC_009092.1 PFAM: periplasmic nitrate reductase NapE; KEGG: shm:Shewmr7_2137 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 2023925 4922675 Shew_1768 Shewanella loihica PV-4 periplasmic nitrate reductase NapE YP_001093893.1 2023767 D 323850 CDS YP_001093894.1 127512697 4923746 2023959..2024222 1 NC_009092.1 PFAM: NapD family protein; KEGG: sdn:Sden_1496 NapD; NapD family protein 2024222 4923746 Shew_1769 Shewanella loihica PV-4 NapD family protein YP_001093894.1 2023959 D 323850 CDS YP_001093895.1 127512698 4923747 2024219..2026714 1 NC_009092.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2026714 4923747 Shew_1770 Shewanella loihica PV-4 nitrate reductase catalytic subunit YP_001093895.1 2024219 D 323850 CDS YP_001093896.1 127512699 4921535 2026726..2027205 1 NC_009092.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_2134 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 2027205 4921535 Shew_1771 Shewanella loihica PV-4 nitrate reductase cytochrome c-type subunit YP_001093896.1 2026726 D 323850 CDS YP_001093897.1 127512700 4922248 2027216..2027803 1 NC_009092.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shm:Shewmr7_2133 periplasmic nitrate (or nitrite) reductase C-type cytochrome, NapC/NirT family; NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome 2027803 4922248 Shew_1772 Shewanella loihica PV-4 NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome YP_001093897.1 2027216 D 323850 CDS YP_001093898.1 127512701 4922442 complement(2027904..2028824) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vfi:VFA0105 transcriptional regulator; LysR family transcriptional regulator 2028824 4922442 Shew_1773 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001093898.1 2027904 R 323850 CDS YP_001093899.1 127512702 4923042 2029126..2029623 1 NC_009092.1 KEGG: sfr:Sfri_2545 excinuclease ATPase subunit; excinuclease ATPase subunit 2029623 4923042 Shew_1774 Shewanella loihica PV-4 excinuclease ATPase subunit YP_001093899.1 2029126 D 323850 CDS YP_001093900.1 127512703 4923043 complement(2029797..2030291) 1 NC_009092.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2030291 ilvH 4923043 ilvH Shewanella loihica PV-4 acetolactate synthase 3 regulatory subunit YP_001093900.1 2029797 R 323850 CDS YP_001093901.1 127512704 4922702 complement(2030291..2032012) 1 NC_009092.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 2032012 4922702 Shew_1776 Shewanella loihica PV-4 acetolactate synthase 3 catalytic subunit YP_001093901.1 2030291 R 323850 CDS YP_001093902.1 127512705 4921442 complement(2032466..2033689) 1 NC_009092.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1831 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 2033689 4921442 Shew_1777 Shewanella loihica PV-4 Bcr/CflA subfamily drug resistance transporter YP_001093902.1 2032466 R 323850 CDS YP_001093903.1 127512706 4923480 complement(2033905..2034792) 1 NC_009092.1 KEGG: lpn:lpg2606 glutamine amidotransferase; glutamine amidotransferase 2034792 4923480 Shew_1778 Shewanella loihica PV-4 glutamine amidotransferase YP_001093903.1 2033905 R 323850 CDS YP_001093904.1 127512707 4923481 2035024..2036907 1 NC_009092.1 KEGG: she:Shewmr4_1752 alkaline phosphatase; alkaline phosphatase 2036907 4923481 Shew_1779 Shewanella loihica PV-4 alkaline phosphatase YP_001093904.1 2035024 D 323850 CDS YP_001093905.1 127512708 4923479 complement(2036973..2037656) 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: ppr:PBPRB1270 hypothetical protein; glutathione S-transferase domain-containing protein 2037656 4923479 Shew_1780 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001093905.1 2036973 R 323850 CDS YP_001093906.1 127512709 4921110 2037965..2038945 1 NC_009092.1 PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_1760 rhodanese domain protein; hypothetical protein 2038945 4921110 Shew_1781 Shewanella loihica PV-4 hypothetical protein YP_001093906.1 2037965 D 323850 CDS YP_001093907.1 127512710 4921424 2039709..2040188 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_3435 transcriptional regulator, MarR family; MarR family transcriptional regulator 2040188 4921424 Shew_1782 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001093907.1 2039709 D 323850 CDS YP_001093908.1 127512711 4922673 2040194..2041252 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0517 secretion protein HlyD family protein; secretion protein HlyD family protein 2041252 4922673 Shew_1783 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001093908.1 2040194 D 323850 CDS YP_001093909.1 127512712 4922674 2041262..2042290 1 NC_009092.1 KEGG: son:SO4050 hypothetical protein; hypothetical protein 2042290 4922674 Shew_1784 Shewanella loihica PV-4 hypothetical protein YP_001093909.1 2041262 D 323850 CDS YP_001093910.1 127512713 4924349 complement(2042287..2043090) 1 NC_009092.1 PFAM: band 7 protein; KEGG: sdn:Sden_2191 band 7 protein; hypothetical protein 2043090 4924349 Shew_1785 Shewanella loihica PV-4 hypothetical protein YP_001093910.1 2042287 R 323850 CDS YP_001093911.1 127512714 4921374 complement(2043100..2044602) 1 NC_009092.1 PFAM: protein of unknown function DUF107; KEGG: sdn:Sden_2190 protein of unknown function DUF107; hypothetical protein 2044602 4921374 Shew_1786 Shewanella loihica PV-4 hypothetical protein YP_001093911.1 2043100 R 323850 CDS YP_001093912.1 127512715 4921262 2044776..2046161 1 NC_009092.1 KEGG: son:SO2189 conserved hypothetical protein; putative chaperone 2046161 4921262 Shew_1787 Shewanella loihica PV-4 putative chaperone YP_001093912.1 2044776 D 323850 CDS YP_001093913.1 127512716 4921263 2046229..2046726 1 NC_009092.1 PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein 2046726 4921263 Shew_1788 Shewanella loihica PV-4 CreA family protein YP_001093913.1 2046229 D 323850 CDS YP_001093914.1 127512717 4924407 complement(2046906..2048093) 1 NC_009092.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2048093 4924407 Shew_1789 Shewanella loihica PV-4 cystathionine beta-lyase YP_001093914.1 2046906 R 323850 CDS YP_001093915.1 127512718 4924402 complement(2048197..2050368) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_2203 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2050368 4924402 Shew_1790 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001093915.1 2048197 R 323850 CDS YP_001093916.1 127512719 4924302 complement(2050371..2051063) 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_1623 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator 2051063 4924302 Shew_1791 Shewanella loihica PV-4 two component transcriptional regulator YP_001093916.1 2050371 R 323850 CDS YP_001093917.1 127512720 4924304 2051283..2052038 1 NC_009092.1 PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_1624 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2052038 4924304 Shew_1792 Shewanella loihica PV-4 OmpA/MotB domain-containing protein YP_001093917.1 2051283 D 323850 CDS YP_001093918.1 127512721 4924305 2052078..2054408 1 NC_009092.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: shm:Shewmr7_2277 vault protein inter-alpha-trypsin domain protein; vault protein inter-alpha-trypsin subunit 2054408 4924305 Shew_1793 Shewanella loihica PV-4 vault protein inter-alpha-trypsin subunit YP_001093918.1 2052078 D 323850 CDS YP_001093919.1 127512722 4924312 2054408..2055208 1 NC_009092.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein 2055208 4924312 Shew_1794 Shewanella loihica PV-4 sortase family protein YP_001093919.1 2054408 D 323850 CDS YP_001093920.1 127512723 4924319 complement(2055296..2056315) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_2198 diguanylate cyclase; diguanylate cyclase 2056315 4924319 Shew_1795 Shewanella loihica PV-4 diguanylate cyclase YP_001093920.1 2055296 R 323850 CDS YP_001093921.1 127512724 4924390 complement(2056472..2059096) 1 NC_009092.1 PFAM: Mammalian cell entry related domain protein; KEGG: she:Shewmr4_1667 mammalian cell entry related domain protein; hypothetical protein 2059096 4924390 Shew_1796 Shewanella loihica PV-4 hypothetical protein YP_001093921.1 2056472 R 323850 CDS YP_001093922.1 127512725 4924391 complement(2059083..2059715) 1 NC_009092.1 PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1743 paraquat-inducible protein A; paraquat-inducible protein A 2059715 4924391 Shew_1797 Shewanella loihica PV-4 paraquat-inducible protein A YP_001093922.1 2059083 R 323850 CDS YP_001093923.1 127512726 4924324 complement(2059708..2060370) 1 NC_009092.1 PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1744 paraquat-inducible protein A; paraquat-inducible protein A 2060370 4924324 Shew_1798 Shewanella loihica PV-4 paraquat-inducible protein A YP_001093923.1 2059708 R 323850 CDS YP_001093924.1 127512727 4924336 2060579..2060875 1 NC_009092.1 PFAM: YebG family protein; KEGG: sdn:Sden_1719 YebG; hypothetical protein 2060875 4924336 Shew_1799 Shewanella loihica PV-4 hypothetical protein YP_001093924.1 2060579 D 323850 CDS YP_001093925.1 127512728 4924297 2060893..2061351 1 NC_009092.1 PFAM: GAF domain protein; KEGG: son:SO2603 GAF domain-containing protein; putative GAF sensor protein 2061351 4924297 Shew_1800 Shewanella loihica PV-4 putative GAF sensor protein YP_001093925.1 2060893 D 323850 CDS YP_001093926.1 127512729 4924294 2061621..2062268 1 NC_009092.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2062268 4924294 Shew_1801 Shewanella loihica PV-4 putative solute/DNA competence effector YP_001093926.1 2061621 D 323850 CDS YP_001093927.1 127512730 4924295 2062300..2064345 1 NC_009092.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2064345 4924295 Shew_1802 Shewanella loihica PV-4 carboxy-terminal protease YP_001093927.1 2062300 D 323850 CDS YP_001093928.1 127512731 4921804 2064418..2066979 1 NC_009092.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_1749 aminopeptidase N; aminopeptidase N 2066979 pepN 4921804 pepN Shewanella loihica PV-4 aminopeptidase N YP_001093928.1 2064418 D 323850 CDS YP_001093929.1 127512732 4920438 2067124..2067378 1 NC_009092.1 KEGG: son:SO2598 hypothetical protein; hypothetical protein 2067378 4920438 Shew_1804 Shewanella loihica PV-4 hypothetical protein YP_001093929.1 2067124 D 323850 CDS YP_001093930.1 127512733 4924396 2067704..2069752 1 NC_009092.1 PFAM: protein of unknown function DUF1302; KEGG: shm:Shewmr7_1751 protein of unknown function DUF1302; hypothetical protein 2069752 4924396 Shew_1805 Shewanella loihica PV-4 hypothetical protein YP_001093930.1 2067704 D 323850 CDS YP_001093931.1 127512734 4924397 2069771..2071135 1 NC_009092.1 PFAM: protein of unknown function DUF1329; KEGG: shm:Shewmr7_1752 protein of unknown function DUF1329; hypothetical protein 2071135 4924397 Shew_1806 Shewanella loihica PV-4 hypothetical protein YP_001093931.1 2069771 D 323850 CDS YP_001093932.1 127512735 4924401 2071283..2072296 1 NC_009092.1 KEGG: shm:Shewmr7_1753 BNR repeat protein; BNR repeat-containing protein 2072296 4924401 Shew_1807 Shewanella loihica PV-4 BNR repeat-containing protein YP_001093932.1 2071283 D 323850 CDS YP_001093933.1 127512736 4924388 2072309..2074612 1 NC_009092.1 KEGG: shm:Shewmr7_1754 hypothetical protein; hypothetical protein 2074612 4924388 Shew_1808 Shewanella loihica PV-4 hypothetical protein YP_001093933.1 2072309 D 323850 CDS YP_001093934.1 127512737 4924387 2074877..2079721 1 NC_009092.1 PFAM: NAD-glutamate dehydrogenase; KEGG: shm:Shewmr7_1755 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2079721 4924387 Shew_1809 Shewanella loihica PV-4 NAD-glutamate dehydrogenase YP_001093934.1 2074877 D 323850 CDS YP_001093935.1 127512738 4924383 2079784..2080809 1 NC_009092.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2080809 4924383 Shew_1810 Shewanella loihica PV-4 dihydroorotate dehydrogenase 2 YP_001093935.1 2079784 D 323850 CDS YP_001093936.1 127512739 4924384 2080969..2081502 1 NC_009092.1 PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein; hypothetical protein 2081502 4924384 Shew_1811 Shewanella loihica PV-4 hypothetical protein YP_001093936.1 2080969 D 323850 CDS YP_001093937.1 127512740 4921704 2083035..2085170 1 NC_009092.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2085170 rlmL 4921704 rlmL Shewanella loihica PV-4 23S rRNA m(2)G2445 methyltransferase YP_001093937.1 2083035 D 323850 CDS YP_001093938.1 127512741 4924380 2085163..2085399 1 NC_009092.1 PFAM: glutaredoxin 2; KEGG: shm:Shewmr7_1608 glutaredoxin 2; glutaredoxin 2085399 4924380 Shew_1813 Shewanella loihica PV-4 glutaredoxin YP_001093938.1 2085163 D 323850 CDS YP_001093939.1 127512742 4924377 2085401..2087320 1 NC_009092.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 2087320 4924377 Shew_1814 Shewanella loihica PV-4 ABC transporter ATPase YP_001093939.1 2085401 D 323850 CDS YP_001093940.1 127512743 4924378 2087345..2089198 1 NC_009092.1 KEGG: shm:Shewmr7_1610 hypothetical protein; hypothetical protein 2089198 4924378 Shew_1815 Shewanella loihica PV-4 hypothetical protein YP_001093940.1 2087345 D 323850 CDS YP_001093941.1 127512744 4924375 2089384..2089560 1 NC_009092.1 PFAM: ribosome modulation factor; KEGG: shm:Shewmr7_1611 ribosome modulation factor; ribosome modulation factor 2089560 4924375 Shew_1816 Shewanella loihica PV-4 ribosome modulation factor YP_001093941.1 2089384 D 323850 CDS YP_001093942.1 127512745 4924374 complement(2089619..2090134) 1 NC_009092.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2090134 4924374 Shew_1817 Shewanella loihica PV-4 3-hydroxydecanoyl-ACP dehydratase YP_001093942.1 2089619 R 323850 CDS YP_001093943.1 127512746 4924373 complement(2090202..2091911) 1 NC_009092.1 KEGG: she:Shewmr4_1546 conserved hypothetical ATP-dependent protease; ATP-dependent protease 2091911 4924373 Shew_1818 Shewanella loihica PV-4 ATP-dependent protease YP_001093943.1 2090202 R 323850 CDS YP_001093944.1 127512747 4924371 2092309..2092977 1 NC_009092.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sdn:Sden_1663 GntR-like protein; GntR family transcriptional regulator 2092977 4924371 Shew_1819 Shewanella loihica PV-4 GntR family transcriptional regulator YP_001093944.1 2092309 D 323850 CDS YP_001093945.1 127512748 4924372 2092990..2093868 1 NC_009092.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2093868 prpB 4924372 prpB Shewanella loihica PV-4 2-methylisocitrate lyase YP_001093945.1 2092990 D 323850 CDS YP_001093946.1 127512749 4924370 2093970..2095094 1 NC_009092.1 KEGG: pat:Patl_1420 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 2095094 4924370 Shew_1821 Shewanella loihica PV-4 2-methylcitrate synthase/citrate synthase II YP_001093946.1 2093970 D 323850 CDS YP_001093947.2 162139868 4924367 2095181..2097769 1 NC_009092.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2097769 4924367 Shew_1822 Shewanella loihica PV-4 aconitate hydratase YP_001093947.2 2095181 D 323850 CDS YP_001093948.1 127512751 4922602 2097828..2098997 1 NC_009092.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; putative AcnD-accessory protein PrpF 2098997 4922602 Shew_1823 Shewanella loihica PV-4 putative AcnD-accessory protein PrpF YP_001093948.1 2097828 D 323850 CDS YP_001093949.1 127512752 4922603 2099222..2099911 1 NC_009092.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2099911 4922603 Shew_1824 Shewanella loihica PV-4 response regulator YP_001093949.1 2099222 D 323850 CDS YP_001093950.1 127512753 4924363 2099943..2101772 1 NC_009092.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2101772 uvrC 4924363 uvrC Shewanella loihica PV-4 excinuclease ABC subunit C YP_001093950.1 2099943 D 323850 CDS YP_001093951.1 127512754 4924362 2101820..2102377 1 NC_009092.1 KEGG: shm:Shewmr7_1616 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2102377 4924362 Shew_1826 Shewanella loihica PV-4 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001093951.1 2101820 D 323850 CDS YP_001093952.1 127512755 4921707 2103011..2103577 1 NC_009092.1 KEGG: she:Shewmr4_3520 methylation site containing protein; methylation site containing protein 2103577 4921707 Shew_1827 Shewanella loihica PV-4 methylation site containing protein YP_001093952.1 2103011 D 323850 CDS YP_001093953.1 127512756 4924346 2103707..2105083 1 NC_009092.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sfr:Sfri_1440 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 2105083 4924346 Shew_1828 Shewanella loihica PV-4 peptidoglycan binding domain-containing protein YP_001093953.1 2103707 D 323850 CDS YP_001093954.1 127512757 4924347 2105252..2105743 1 NC_009092.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: shm:Shewmr7_2145 protein of unknown function DUF882; hypothetical protein 2105743 4924347 Shew_1829 Shewanella loihica PV-4 hypothetical protein YP_001093954.1 2105252 D 323850 CDS YP_001093955.1 127512758 4924344 2105880..2106167 1 NC_009092.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2106167 4924344 Shew_1830 Shewanella loihica PV-4 50S ribosomal protein L25 YP_001093955.1 2105880 D 323850 CDS YP_001093956.1 127512759 4922093 complement(2106265..2107797) 1 NC_009092.1 PFAM: SpoVR family protein; KEGG: sdn:Sden_1636 SpoVR; SpoVR family protein 2107797 4922093 Shew_1831 Shewanella loihica PV-4 SpoVR family protein YP_001093956.1 2106265 R 323850 CDS YP_001093957.1 127512760 4921968 complement(2107806..2109074) 1 NC_009092.1 PFAM: protein of unknown function DUF444; KEGG: shm:Shewmr7_1645 protein of unknown function DUF444; hypothetical protein 2109074 4921968 Shew_1832 Shewanella loihica PV-4 hypothetical protein YP_001093957.1 2107806 R 323850 CDS YP_001093958.1 127512761 4921969 complement(2109122..2111056) 1 NC_009092.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA 2111056 4921969 Shew_1833 Shewanella loihica PV-4 putative serine protein kinase PrkA YP_001093958.1 2109122 R 323850 CDS YP_001093959.1 127512762 4924333 complement(2111512..2112096) 1 NC_009092.1 PFAM: manganese and iron superoxide dismutase; KEGG: sfr:Sfri_1747 superoxide dismutase; superoxide dismutase 2112096 4924333 Shew_1834 Shewanella loihica PV-4 superoxide dismutase YP_001093959.1 2111512 R 323850 CDS YP_001093960.1 127512763 4924335 2112328..2112678 1 NC_009092.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: shm:Shewmr7_1648 glutaredoxin-like protein; glutaredoxin-like protein 2112678 4924335 Shew_1835 Shewanella loihica PV-4 glutaredoxin-like protein YP_001093960.1 2112328 D 323850 CDS YP_001093961.1 127512764 4924330 complement(2112798..2114033) 1 NC_009092.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_1649 uracil-xanthine permease; uracil-xanthine permease 2114033 4924330 Shew_1836 Shewanella loihica PV-4 uracil-xanthine permease YP_001093961.1 2112798 R 323850 CDS YP_001093962.1 127512765 4924325 2114231..2115361 1 NC_009092.1 KEGG: son:SO2878 hypothetical protein; hypothetical protein 2115361 4924325 Shew_1837 Shewanella loihica PV-4 hypothetical protein YP_001093962.1 2114231 D 323850 CDS YP_001093963.1 127512766 4924326 2115452..2116162 1 NC_009092.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2116162 4924326 Shew_1838 Shewanella loihica PV-4 DNA replication initiation factor YP_001093963.1 2115452 D 323850 CDS YP_001093964.1 127512767 4924321 complement(2116293..2116664) 1 NC_009092.1 KEGG: sfr:Sfri_1753 hypothetical protein; hypothetical protein 2116664 4924321 Shew_1839 Shewanella loihica PV-4 hypothetical protein YP_001093964.1 2116293 R 323850 CDS YP_001093965.1 127512768 4924318 complement(2116679..2117041) 1 NC_009092.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sfr:Sfri_1754 arsenate reductase; arsenate reductase 2117041 4924318 Shew_1840 Shewanella loihica PV-4 arsenate reductase YP_001093965.1 2116679 R 323850 CDS YP_001093966.1 127512769 4924314 complement(2117114..2118571) 1 NC_009092.1 PFAM: peptidase M48, Ste24p; KEGG: she:Shewmr4_2347 peptidase M48, Ste24p; peptidase M48, Ste24p 2118571 4924314 Shew_1841 Shewanella loihica PV-4 peptidase M48, Ste24p YP_001093966.1 2117114 R 323850 CDS YP_001093967.1 127512770 4924315 2118741..2118962 1 NC_009092.1 PFAM: SirA family protein; KEGG: she:Shewmr4_2346 SirA family protein; SirA family protein 2118962 4924315 Shew_1842 Shewanella loihica PV-4 SirA family protein YP_001093967.1 2118741 D 323850 CDS YP_001093968.1 127512771 4921423 2119132..2120232 1 NC_009092.1 PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_2417 protein of unknown function UPF0118; hypothetical protein 2120232 4921423 Shew_1843 Shewanella loihica PV-4 hypothetical protein YP_001093968.1 2119132 D 323850 CDS YP_001093969.1 127512772 4924313 complement(2120304..2121191) 1 NC_009092.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2121191 4924313 Shew_1844 Shewanella loihica PV-4 chromosome replication initiation inhibitor protein YP_001093969.1 2120304 R 323850 CDS YP_001093970.1 127512773 4924311 2121305..2121949 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2415 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2121949 4924311 Shew_1845 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001093970.1 2121305 D 323850 CDS YP_001093971.1 127512774 4924309 complement(2122051..2122521) 1 NC_009092.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pat:Patl_2480 redoxin; redoxin domain-containing protein 2122521 4924309 Shew_1846 Shewanella loihica PV-4 redoxin domain-containing protein YP_001093971.1 2122051 R 323850 CDS YP_001093972.1 127512775 4924310 complement(2122518..2123072) 1 NC_009092.1 PFAM: amino acid-binding ACT domain protein; KEGG: shm:Shewmr7_2413 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 2123072 4924310 Shew_1847 Shewanella loihica PV-4 amino acid-binding ACT domain-containing protein YP_001093972.1 2122518 R 323850 CDS YP_001093973.1 127512776 4924303 2123316..2124200 1 NC_009092.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2124200 4924303 Shew_1848 Shewanella loihica PV-4 dihydrodipicolinate synthase YP_001093973.1 2123316 D 323850 CDS YP_001093974.1 127512777 4921046 2124205..2125326 1 NC_009092.1 PFAM: NlpBDapX family lipoprotein; KEGG: shm:Shewmr7_2411 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein 2125326 4921046 Shew_1849 Shewanella loihica PV-4 NlpB/DapX family lipoprotein YP_001093974.1 2124205 D 323850 CDS YP_001093975.1 127512778 4924298 2125619..2127991 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: pha:PSHAa1182 hypothetical protein ; GGDEF protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase 2127991 4924298 Shew_1850 Shewanella loihica PV-4 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001093975.1 2125619 D 323850 CDS YP_001093976.1 127512779 4924299 2128155..2129240 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2410 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2129240 4924299 Shew_1851 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001093976.1 2128155 D 323850 CDS YP_001093977.1 127512780 4924296 2129237..2132365 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2409 acriflavin resistance protein; acriflavin resistance protein 2132365 4924296 Shew_1852 Shewanella loihica PV-4 acriflavin resistance protein YP_001093977.1 2129237 D 323850 CDS YP_001093978.1 127512781 4924293 2132614..2132931 1 NC_009092.1 KEGG: shm:Shewmr7_1688 hypothetical protein; hypothetical protein 2132931 4924293 Shew_1853 Shewanella loihica PV-4 hypothetical protein YP_001093978.1 2132614 D 323850 CDS YP_001093979.1 127512782 4924334 2133350..2134720 1 NC_009092.1 KEGG: sfr:Sfri_3720 hypothetical protein; hypothetical protein 2134720 4924334 Shew_1854 Shewanella loihica PV-4 hypothetical protein YP_001093979.1 2133350 D 323850 CDS YP_001093980.1 127512783 4924358 complement(2134825..2135091) 1 NC_009092.1 KEGG: sdn:Sden_2135 hypothetical protein; hypothetical protein 2135091 4924358 Shew_1855 Shewanella loihica PV-4 hypothetical protein YP_001093980.1 2134825 R 323850 CDS YP_001093981.1 127512784 4924359 complement(2135122..2135859) 1 NC_009092.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2135859 4924359 Shew_1856 Shewanella loihica PV-4 3-deoxy-manno-octulosonate cytidylyltransferase YP_001093981.1 2135122 R 323850 CDS YP_001093982.1 127512785 4924369 complement(2135944..2137014) 1 NC_009092.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sdn:Sden_2133 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2137014 4924369 Shew_1857 Shewanella loihica PV-4 iron-containing alcohol dehydrogenase YP_001093982.1 2135944 R 323850 CDS YP_001093983.1 127512786 4924385 complement(2137104..2138291) 1 NC_009092.1 PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: shm:Shewmr7_2125 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2138291 4924385 Shew_1858 Shewanella loihica PV-4 DegT/DnrJ/EryC1/StrS aminotransferase YP_001093983.1 2137104 R 323850 CDS YP_001093984.1 127512787 4924398 complement(2138546..2139157) 1 NC_009092.1 PFAM: carbonic anhydrase; KEGG: shm:Shewmr7_2124 carbonate dehydratase; carbonate dehydratase 2139157 4924398 Shew_1859 Shewanella loihica PV-4 carbonate dehydratase YP_001093984.1 2138546 R 323850 CDS YP_001093985.1 127512788 4924399 complement(2139297..2140130) 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_2123 alpha/beta hydrolase fold; alpha/beta hydrolase 2140130 4924399 Shew_1860 Shewanella loihica PV-4 alpha/beta hydrolase YP_001093985.1 2139297 R 323850 CDS YP_001093986.1 127512789 4921291 complement(2140137..2140889) 1 NC_009092.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: sfr:Sfri_1764 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 2140889 4921291 Shew_1861 Shewanella loihica PV-4 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin YP_001093986.1 2140137 R 323850 CDS YP_001093987.1 127512790 4924306 complement(2140883..2142013) 1 NC_009092.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2142013 4924306 Shew_1862 Shewanella loihica PV-4 succinyl-diaminopimelate desuccinylase YP_001093987.1 2140883 R 323850 CDS YP_001093988.1 127512791 4924317 complement(2142010..2142354) 1 NC_009092.1 PFAM: arsenate reductase and related; KEGG: she:Shewmr4_1858 hypothetical protein; arsenate reductase-like protein 2142354 4924317 Shew_1863 Shewanella loihica PV-4 arsenate reductase-like protein YP_001093988.1 2142010 R 323850 CDS YP_001093989.1 127512792 4924338 complement(2142641..2143150) 1 NC_009092.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2143150 4924338 Shew_1864 Shewanella loihica PV-4 PTS system glucose-specific transporter YP_001093989.1 2142641 R 323850 CDS YP_001093990.1 127512793 4924339 complement(2143217..2144923) 1 NC_009092.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: shm:Shewmr7_1842 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2144923 4924339 Shew_1865 Shewanella loihica PV-4 phosphoenolpyruvate-protein phosphotransferase YP_001093990.1 2143217 R 323850 CDS YP_001093991.1 127512794 4924289 complement(2144935..2145192) 1 NC_009092.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shm:Shewmr7_1843 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr 2145192 4924289 Shew_1866 Shewanella loihica PV-4 phosphotransferase system, phosphocarrier protein HPr YP_001093991.1 2144935 R 323850 CDS YP_001093992.1 127512795 4924291 complement(2145224..2145616) 1 NC_009092.1 KEGG: shm:Shewmr7_1844 hypothetical protein; hypothetical protein 2145616 4924291 Shew_1867 Shewanella loihica PV-4 hypothetical protein YP_001093992.1 2145224 R 323850 CDS YP_001093993.1 127512796 4924327 complement(2145832..2147469) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_1845 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2147469 4924327 Shew_1868 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001093993.1 2145832 R 323850 CDS YP_001093994.1 127512797 4924328 2147862..2148554 1 NC_009092.1 KEGG: son:SO2241 hypothetical protein; hypothetical protein 2148554 4924328 Shew_1869 Shewanella loihica PV-4 hypothetical protein YP_001093994.1 2147862 D 323850 CDS YP_001093995.1 127512798 4924389 2148619..2149647 1 NC_009092.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1847 transcriptional regulator, LacI family; LacI family transcriptional regulator 2149647 4924389 Shew_1870 Shewanella loihica PV-4 LacI family transcriptional regulator YP_001093995.1 2148619 D 323850 CDS YP_001093996.1 127512799 4924353 complement(2149644..2150258) 1 NC_009092.1 KEGG: vfi:VFA0016 DNA polymerase III epsilon subunit (3'-5' exonuclease); TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2150258 4924353 Shew_1871 Shewanella loihica PV-4 DNA polymerase III subunit epsilon YP_001093996.1 2149644 R 323850 CDS YP_001093997.1 127512800 4924292 complement(2150354..2152438) 1 NC_009092.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2152438 4924292 Shew_1872 Shewanella loihica PV-4 elongation factor G YP_001093997.1 2150354 R 323850 CDS YP_001093998.1 127512801 4924094 complement(2152982..2155483) 1 NC_009092.1 KEGG: shm:Shewmr7_2109 glucan 1,4-alpha-glucosidase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; glucan 1,4-alpha-glucosidase 2155483 4924094 Shew_1873 Shewanella loihica PV-4 glucan 1,4-alpha-glucosidase YP_001093998.1 2152982 R 323850 CDS YP_001093999.1 127512802 4924095 complement(2155574..2157148) 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1870 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2157148 4924095 Shew_1874 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001093999.1 2155574 R 323850 CDS YP_001094000.1 127512803 4922127 complement(2157984..2159513) 1 NC_009092.1 PFAM: peptidase M20; Fibronectin, type III domain protein; peptidase M28; KEGG: sfr:Sfri_3859 peptidase M28; peptidase M28 2159513 4922127 Shew_1875 Shewanella loihica PV-4 peptidase M28 YP_001094000.1 2157984 R 323850 CDS YP_001094001.1 127512804 4922128 complement(2159901..2162024) 1 NC_009092.1 KEGG: sfr:Sfri_1777 alpha-glucosidase; alpha-glucosidase 2162024 4922128 Shew_1876 Shewanella loihica PV-4 alpha-glucosidase YP_001094001.1 2159901 R 323850 CDS YP_001094002.1 127512805 4922030 2162552..2162956 1 NC_009092.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: hch:HCH_05473 hypothetical protein; glutathione-dependent formaldehyde-activating protein 2162956 4922030 Shew_1877 Shewanella loihica PV-4 glutathione-dependent formaldehyde-activating protein YP_001094002.1 2162552 D 323850 CDS YP_001094003.1 127512806 4922031 2163071..2164156 1 NC_009092.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: vpa:VPA0296 putative oxidoreductase protein; 2-nitropropane dioxygenase 2164156 4922031 Shew_1878 Shewanella loihica PV-4 2-nitropropane dioxygenase YP_001094003.1 2163071 D 323850 CDS YP_001094004.1 127512807 4922032 2164195..2164740 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1378 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2164740 4922032 Shew_1879 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094004.1 2164195 D 323850 CDS YP_001094005.1 127512808 4922033 2164791..2165231 1 NC_009092.1 KEGG: sfr:Sfri_1916 hypothetical protein; hypothetical protein 2165231 4922033 Shew_1880 Shewanella loihica PV-4 hypothetical protein YP_001094005.1 2164791 D 323850 CDS YP_001094006.1 127512809 4921714 2165424..2165825 1 NC_009092.1 KEGG: vch:VCA0414 hypothetical protein; hypothetical protein 2165825 4921714 Shew_1881 Shewanella loihica PV-4 hypothetical protein YP_001094006.1 2165424 D 323850 CDS YP_001094007.1 127512810 4921715 complement(2165827..2167113) 1 NC_009092.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sfr:Sfri_2300 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2167113 4921715 Shew_1882 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001094007.1 2165827 R 323850 CDS YP_001094008.1 127512811 4921716 complement(2167489..2167725) 1 NC_009092.1 hypothetical protein 2167725 4921716 Shew_1883 Shewanella loihica PV-4 hypothetical protein YP_001094008.1 2167489 R 323850 CDS YP_001094009.1 127512812 4921717 2168190..2169656 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: vpa:VP0903 RhlE; DEAD/DEAH box helicase 2169656 4921717 Shew_1884 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001094009.1 2168190 D 323850 CDS YP_001094010.1 127512813 4921718 2170419..2171285 1 NC_009092.1 KEGG: hch:HCH_04427 hypothetical protein; hypothetical protein 2171285 4921718 Shew_1885 Shewanella loihica PV-4 hypothetical protein YP_001094010.1 2170419 D 323850 CDS YP_001094011.1 127512814 4921719 complement(2171509..2173512) 1 NC_009092.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sfr:Sfri_1784 alpha amylase, catalytic region; alpha amylase 2173512 4921719 Shew_1886 Shewanella loihica PV-4 alpha amylase YP_001094011.1 2171509 R 323850 CDS YP_001094012.1 127512815 4921720 complement(2173512..2175476) 1 NC_009092.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region; alpha amylase 2175476 4921720 Shew_1887 Shewanella loihica PV-4 alpha amylase YP_001094012.1 2173512 R 323850 CDS YP_001094013.1 127512816 4921768 complement(2175650..2178478) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2134 TonB-dependent receptor; TonB-dependent receptor, plug 2178478 4921768 Shew_1888 Shewanella loihica PV-4 TonB-dependent receptor, plug YP_001094013.1 2175650 R 323850 CDS YP_001094014.1 127512817 4921769 2178964..2180589 1 NC_009092.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase; alpha amylase 2180589 4921769 Shew_1889 Shewanella loihica PV-4 alpha amylase YP_001094014.1 2178964 D 323850 CDS YP_001094015.1 127512818 4921770 2180729..2181994 1 NC_009092.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_1789 glucose/galactose transporter; glucose/galactose transporter 2181994 4921770 Shew_1890 Shewanella loihica PV-4 glucose/galactose transporter YP_001094015.1 2180729 D 323850 CDS YP_001094016.1 127512819 4921771 2182111..2183367 1 NC_009092.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative; Fmu (Sun) domain-containing protein 2183367 4921771 Shew_1891 Shewanella loihica PV-4 Fmu (Sun) domain-containing protein YP_001094016.1 2182111 D 323850 CDS YP_001094017.1 127512820 4921772 2183542..2187027 1 NC_009092.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pae:PA0799 probable helicase; SNF2-related protein 2187027 4921772 Shew_1892 Shewanella loihica PV-4 SNF2-related protein YP_001094017.1 2183542 D 323850 CDS YP_001094018.1 127512821 4921773 complement(2187086..2187505) 1 NC_009092.1 PFAM: protein of unknown function UPF0047; KEGG: sde:Sde_0527 alpha-1,6-glucosidases, pullulanase-type; hypothetical protein 2187505 4921773 Shew_1893 Shewanella loihica PV-4 hypothetical protein YP_001094018.1 2187086 R 323850 CDS YP_001094019.1 127512822 4921774 2187732..2189663 1 NC_009092.1 KEGG: vpa:VPA0700 hypothetical protein; hypothetical protein 2189663 4921774 Shew_1894 Shewanella loihica PV-4 hypothetical protein YP_001094019.1 2187732 D 323850 CDS YP_001094020.1 127512823 4921775 2189873..2190442 1 NC_009092.1 PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_2154 redoxin domain protein; redoxin domain-containing protein 2190442 4921775 Shew_1895 Shewanella loihica PV-4 redoxin domain-containing protein YP_001094020.1 2189873 D 323850 CDS YP_001094021.1 127512824 4921776 2190432..2190650 1 NC_009092.1 KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 2190650 4921776 Shew_1896 Shewanella loihica PV-4 putative lipoprotein YP_001094021.1 2190432 D 323850 CDS YP_001094022.1 127512825 4921777 2190811..2192133 1 NC_009092.1 KEGG: sfr:Sfri_1126 hypothetical protein; hypothetical protein 2192133 4921777 Shew_1897 Shewanella loihica PV-4 hypothetical protein YP_001094022.1 2190811 D 323850 CDS YP_001094023.1 127512826 4921778 2192157..2193149 1 NC_009092.1 PFAM: ApbE family lipoprotein; KEGG: shm:Shewmr7_2151 ApbE family lipoprotein; ApbE family lipoprotein 2193149 4921778 Shew_1898 Shewanella loihica PV-4 ApbE family lipoprotein YP_001094023.1 2192157 D 323850 CDS YP_001094024.1 127512827 4921779 2193844..2194353 1 NC_009092.1 KEGG: vpa:VP1792 hypothetical protein; hypothetical protein 2194353 4921779 Shew_1899 Shewanella loihica PV-4 hypothetical protein YP_001094024.1 2193844 D 323850 CDS YP_001094025.1 127512828 4921780 complement(2195005..2196405) 1 NC_009092.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2196405 asnC 4921780 asnC Shewanella loihica PV-4 asparaginyl-tRNA synthetase YP_001094025.1 2195005 R 323850 CDS YP_001094026.1 127512829 4921781 2196652..2196987 1 NC_009092.1 KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein 2196987 4921781 Shew_1901 Shewanella loihica PV-4 hypothetical protein YP_001094026.1 2196652 D 323850 CDS YP_001094027.1 127512830 4921782 complement(2197099..2197668) 1 NC_009092.1 PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_2126 NUDIX hydrolase; NUDIX hydrolase 2197668 4921782 Shew_1902 Shewanella loihica PV-4 NUDIX hydrolase YP_001094027.1 2197099 R 323850 CDS YP_001094028.1 127512831 4921625 complement(2197686..2199119) 1 NC_009092.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: shm:Shewmr7_2201 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I 2199119 4921625 Shew_1903 Shewanella loihica PV-4 para-aminobenzoate synthase subunit I YP_001094028.1 2197686 R 323850 CDS YP_001094029.1 127512832 4921626 2199247..2200770 1 NC_009092.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: shm:Shewmr7_2200 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2200770 4921626 Shew_1904 Shewanella loihica PV-4 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_001094029.1 2199247 D 323850 CDS YP_001094030.1 127512833 4921627 2200934..2202991 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative; peptidase S9 prolyl oligopeptidase 2202991 4921627 Shew_1905 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001094030.1 2200934 D 323850 CDS YP_001094031.1 127512834 4921628 complement(2203180..2203593) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_4885 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2203593 4921628 Shew_1906 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094031.1 2203180 R 323850 CDS YP_001094032.1 127512835 4921629 2203874..2204302 1 NC_009092.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: tbd:Tbd_2410 hypothetical protein; glutathione-dependent formaldehyde-activating protein 2204302 4921629 Shew_1907 Shewanella loihica PV-4 glutathione-dependent formaldehyde-activating protein YP_001094032.1 2203874 D 323850 CDS YP_001094033.1 127512836 4921630 complement(2204395..2205021) 1 NC_009092.1 hypothetical protein 2205021 4921630 Shew_1908 Shewanella loihica PV-4 hypothetical protein YP_001094033.1 2204395 R 323850 CDS YP_001094034.1 127512837 4921631 complement(2205526..2206188) 1 NC_009092.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pat:Patl_3690 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 2206188 4921631 Shew_1909 Shewanella loihica PV-4 2OG-Fe(II) oxygenase YP_001094034.1 2205526 R 323850 CDS YP_001094035.1 127512838 4921632 complement(2206437..2209055) 1 NC_009092.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: she:Shewmr4_1683 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2209055 4921632 Shew_1910 Shewanella loihica PV-4 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_001094035.1 2206437 R 323850 CDS YP_001094036.1 127512839 4921633 2209370..2210011 1 NC_009092.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: shm:Shewmr7_1759 multiple antibiotic resistance (MarC)-related proteins; hypothetical protein 2210011 4921633 Shew_1911 Shewanella loihica PV-4 hypothetical protein YP_001094036.1 2209370 D 323850 CDS YP_001094037.1 127512840 4921634 complement(2210118..2211443) 1 NC_009092.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2211443 4921634 Shew_1912 Shewanella loihica PV-4 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001094037.1 2210118 R 323850 CDS YP_001094038.1 127512841 4921635 complement(2211472..2212059) 1 NC_009092.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2484 hypothetical protein; hypothetical protein 2212059 4921635 Shew_1913 Shewanella loihica PV-4 hypothetical protein YP_001094038.1 2211472 R 323850 CDS YP_001094039.1 127512842 4921636 complement(2212362..2213576) 1 NC_009092.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2213576 4921636 Shew_1914 Shewanella loihica PV-4 aminotransferase AlaT YP_001094039.1 2212362 R 323850 CDS YP_001094040.1 127512843 4921637 complement(2213855..2214415) 1 NC_009092.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2214415 4921637 Shew_1915 Shewanella loihica PV-4 elongation factor P YP_001094040.1 2213855 R 323850 CDS YP_001094041.1 127512844 4921638 complement(2214463..2215632) 1 NC_009092.1 KEGG: sdn:Sden_1991 hypothetical protein; hypothetical protein 2215632 4921638 Shew_1916 Shewanella loihica PV-4 hypothetical protein YP_001094041.1 2214463 R 323850 CDS YP_001094042.1 127512845 4921245 complement(2215844..2216371) 1 NC_009092.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2216371 4921245 Shew_1917 Shewanella loihica PV-4 flavodoxin FldA YP_001094042.1 2215844 R 323850 CDS YP_001094043.1 127512846 4921246 complement(2216422..2216694) 1 NC_009092.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: sdn:Sden_1989 CopG-like DNA-binding; LexA regulated protein 2216694 4921246 Shew_1918 Shewanella loihica PV-4 LexA regulated protein YP_001094043.1 2216422 R 323850 CDS YP_001094044.1 127512847 4921247 complement(2216706..2216927) 1 NC_009092.1 KEGG: shm:Shewmr7_1941 hypothetical protein; hypothetical protein 2216927 4921247 Shew_1919 Shewanella loihica PV-4 hypothetical protein YP_001094044.1 2216706 R 323850 CDS YP_001094045.1 127512848 4921248 complement(2217009..2217776) 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase 2217776 4921248 Shew_1920 Shewanella loihica PV-4 alpha/beta hydrolase YP_001094045.1 2217009 R 323850 CDS YP_001094046.1 127512849 4921249 2218068..2218598 1 NC_009092.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2218598 4921249 Shew_1921 Shewanella loihica PV-4 replication initiation regulator SeqA YP_001094046.1 2218068 D 323850 CDS YP_001094047.1 127512850 4921250 2218643..2220322 1 NC_009092.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2220322 4921250 Shew_1922 Shewanella loihica PV-4 phosphoglucomutase YP_001094047.1 2218643 D 323850 CDS YP_001094048.1 127512851 4921251 complement(2220481..2220960) 1 NC_009092.1 KEGG: sdn:Sden_1784 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2220960 4921251 Shew_1923 Shewanella loihica PV-4 peptide methionine sulfoxide reductase YP_001094048.1 2220481 R 323850 CDS YP_001094049.1 127512852 4921252 2221280..2222347 1 NC_009092.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2222347 4921252 Shew_1924 Shewanella loihica PV-4 succinylglutamate desuccinylase YP_001094049.1 2221280 D 323850 CDS YP_001094050.1 127512853 4921253 2222531..2223709 1 NC_009092.1 PFAM: dehydrogenase, E1 component; KEGG: shm:Shewmr7_1947 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase 2223709 4921253 Shew_1925 Shewanella loihica PV-4 3-methyl-2-oxobutanoate dehydrogenase YP_001094050.1 2222531 D 323850 CDS YP_001094051.1 127512854 4921254 2223713..2224690 1 NC_009092.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: shm:Shewmr7_1948 transketolase, central region; transketolase, central region 2224690 4921254 Shew_1926 Shewanella loihica PV-4 transketolase, central region YP_001094051.1 2223713 D 323850 CDS YP_001094052.1 127512855 4921255 2224702..2226264 1 NC_009092.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1949 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase 2226264 4921255 Shew_1927 Shewanella loihica PV-4 dihydrolipoamide acetyltransferase YP_001094052.1 2224702 D 323850 CDS YP_001094053.1 127512856 4921256 2226384..2227451 1 NC_009092.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2227451 4921256 Shew_1928 Shewanella loihica PV-4 quinolinate synthetase YP_001094053.1 2226384 D 323850 CDS YP_001094054.1 127512857 4921257 2227766..2229754 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: shm:Shewmr7_1760 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2229754 4921257 Shew_1929 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001094054.1 2227766 D 323850 CDS YP_001094055.1 127512858 4921708 2230307..2230504 1 NC_009092.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: sfr:Sfri_1091 hypothetical protein; CopG/DNA-binding domain-containing protein 2230504 4921708 Shew_1930 Shewanella loihica PV-4 CopG/DNA-binding domain-containing protein YP_001094055.1 2230307 D 323850 CDS YP_001094056.1 127512859 4921259 2230705..2231049 1 NC_009092.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: sdn:Sden_1233 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 2231049 4921259 Shew_1931 Shewanella loihica PV-4 alkylphosphonate utilization operon protein PhnA YP_001094056.1 2230705 D 323850 CDS YP_001094057.1 127512860 4921466 complement(2231216..2232814) 1 NC_009092.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2232814 cls 4921466 cls Shewanella loihica PV-4 cardiolipin synthetase YP_001094057.1 2231216 R 323850 CDS YP_001094058.1 127512861 4921467 2232895..2233773 1 NC_009092.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2923 hypothetical protein; endonuclease/exonuclease/phosphatase 2233773 4921467 Shew_1933 Shewanella loihica PV-4 endonuclease/exonuclease/phosphatase YP_001094058.1 2232895 D 323850 CDS YP_001094059.1 127512862 4921468 complement(2233820..2234548) 1 NC_009092.1 KEGG: dde:Dde_3063 hypothetical protein; hypothetical protein 2234548 4921468 Shew_1934 Shewanella loihica PV-4 hypothetical protein YP_001094059.1 2233820 R 323850 CDS YP_001094060.1 127512863 4921469 2235127..2236905 1 NC_009092.1 PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein 2236905 4921469 Shew_1935 Shewanella loihica PV-4 hypothetical protein YP_001094060.1 2235127 D 323850 CDS YP_001094061.1 127512864 4921470 2237070..2237750 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_2074 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2237750 4921470 Shew_1936 Shewanella loihica PV-4 two component transcriptional regulator YP_001094061.1 2237070 D 323850 CDS YP_001094062.1 127512865 4921471 2237876..2239003 1 NC_009092.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: sfr:Sfri_2149 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2239003 4921471 Shew_1937 Shewanella loihica PV-4 peptidase M14, carboxypeptidase A YP_001094062.1 2237876 D 323850 CDS YP_001094063.1 127512866 4921472 2239013..2239330 1 NC_009092.1 KEGG: son:SO2423 hypothetical protein; hypothetical protein 2239330 4921472 Shew_1938 Shewanella loihica PV-4 hypothetical protein YP_001094063.1 2239013 D 323850 CDS YP_001094064.1 127512867 4921473 2239327..2239608 1 NC_009092.1 PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein 2239608 4921473 Shew_1939 Shewanella loihica PV-4 hypothetical protein YP_001094064.1 2239327 D 323850 CDS YP_001094065.1 127512868 4921474 complement(2239668..2240681) 1 NC_009092.1 converts asparagine to aspartate and ammonia; asparaginase 2240681 ansA 4921474 ansA Shewanella loihica PV-4 asparaginase YP_001094065.1 2239668 R 323850 CDS YP_001094066.1 127512869 4921475 complement(2240803..2242644) 1 NC_009092.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2242644 4921475 Shew_1941 Shewanella loihica PV-4 signal peptide peptidase SppA, 67K type YP_001094066.1 2240803 R 323850 CDS YP_001094067.1 127512870 4921476 2242810..2244825 1 NC_009092.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2144 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2244825 4921476 Shew_1942 Shewanella loihica PV-4 NADH:flavin oxidoreductase YP_001094067.1 2242810 D 323850 CDS YP_001094068.1 127512871 4921477 2244949..2245449 1 NC_009092.1 KEGG: hne:HNE_0837 YCII domain protein; hypothetical protein 2245449 4921477 Shew_1943 Shewanella loihica PV-4 hypothetical protein YP_001094068.1 2244949 D 323850 CDS YP_001094069.1 127512872 4921478 complement(2245730..2246110) 1 NC_009092.1 PFAM: ferredoxin; KEGG: sfr:Sfri_2135 ferredoxin; ferredoxin 2246110 4921478 Shew_1944 Shewanella loihica PV-4 ferredoxin YP_001094069.1 2245730 R 323850 CDS YP_001094070.1 127512873 4921479 complement(2246079..2247209) 1 NC_009092.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2247209 nrdB 4921479 nrdB Shewanella loihica PV-4 ribonucleotide-diphosphate reductase subunit beta YP_001094070.1 2246079 R 323850 CDS YP_001094071.1 127512874 4920979 complement(2247269..2249557) 1 NC_009092.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2249557 4920979 Shew_1946 Shewanella loihica PV-4 ribonucleotide-diphosphate reductase subunit alpha YP_001094071.1 2247269 R 323850 CDS YP_001094072.1 127512875 4920980 complement(2250038..2250757) 1 NC_009092.1 KEGG: she:Shewmr4_1917 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2250757 4920980 Shew_1947 Shewanella loihica PV-4 HAD family hydrolase YP_001094072.1 2250038 R 323850 CDS YP_001094073.1 127512876 4920981 complement(2250750..2251538) 1 NC_009092.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2251538 4920981 Shew_1948 Shewanella loihica PV-4 3-demethylubiquinone-9 3-methyltransferase YP_001094073.1 2250750 R 323850 CDS YP_001094074.1 127512877 4920982 2251792..2254431 1 NC_009092.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: shm:Shewmr7_2059 DNA gyrase, A subunit; DNA gyrase subunit A 2254431 4920982 Shew_1949 Shewanella loihica PV-4 DNA gyrase subunit A YP_001094074.1 2251792 D 323850 CDS YP_001094075.2 162139867 4920983 2254562..2255656 1 NC_009092.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2255656 4920983 Shew_1950 Shewanella loihica PV-4 phosphoserine aminotransferase YP_001094075.2 2254562 D 323850 CDS YP_001094076.1 127512879 4920984 complement(2255769..2256959) 1 NC_009092.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2256959 4920984 Shew_1951 Shewanella loihica PV-4 aromatic amino acid aminotransferase YP_001094076.1 2255769 R 323850 CDS YP_001094077.1 127512880 4920985 2257349..2258629 1 NC_009092.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2258629 4920985 Shew_1952 Shewanella loihica PV-4 3-phosphoshikimate 1-carboxyvinyltransferase YP_001094077.1 2257349 D 323850 CDS YP_001094078.1 127512881 4920986 2258806..2259498 1 NC_009092.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2259498 cmk 4920986 cmk Shewanella loihica PV-4 cytidylate kinase YP_001094078.1 2258806 D 323850 CDS YP_001094079.1 127512882 4920987 2259598..2261265 1 NC_009092.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2261265 rpsA 4920987 rpsA Shewanella loihica PV-4 30S ribosomal protein S1 YP_001094079.1 2259598 D 323850 CDS YP_001094080.1 127512883 4920988 2261338..2261625 1 NC_009092.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2261625 ihfB 4920988 ihfB Shewanella loihica PV-4 integration host factor subunit beta YP_001094080.1 2261338 D 323850 CDS YP_001094081.1 127512884 4920989 2261736..2262065 1 NC_009092.1 PFAM: protein of unknown function DUF1049; KEGG: sfr:Sfri_2121 protein of unknown function DUF1049; hypothetical protein 2262065 4920989 Shew_1956 Shewanella loihica PV-4 hypothetical protein YP_001094081.1 2261736 D 323850 CDS YP_001094082.1 127512885 4920990 2262067..2263227 1 NC_009092.1 KEGG: son:SO2399 hypothetical protein; hypothetical protein 2263227 4920990 Shew_1957 Shewanella loihica PV-4 hypothetical protein YP_001094082.1 2262067 D 323850 CDS YP_001094083.1 127512886 4920991 2263263..2263958 1 NC_009092.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2263958 4920991 Shew_1958 Shewanella loihica PV-4 orotidine 5'-phosphate decarboxylase YP_001094083.1 2263263 D 323850 CDS YP_001094084.1 127512887 4920992 2264022..2264837 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdn:Sden_1758 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2264837 4920992 Shew_1959 Shewanella loihica PV-4 short chain dehydrogenase YP_001094084.1 2264022 D 323850 CDS YP_001094085.1 127512888 4921392 2264876..2265418 1 NC_009092.1 KEGG: son:SO2396 hypothetical protein; hypothetical protein 2265418 4921392 Shew_1960 Shewanella loihica PV-4 hypothetical protein YP_001094085.1 2264876 D 323850 CDS YP_001094086.1 127512889 4921393 2265581..2267332 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: she:Shewmr4_1931 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2267332 4921393 Shew_1961 Shewanella loihica PV-4 acyl-CoA dehydrogenase domain-containing protein YP_001094086.1 2265581 D 323850 CDS YP_001094087.1 127512890 4921394 complement(2267440..2269071) 1 NC_009092.1 KEGG: son:SO2394 penicillin-binding protein 4; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2269071 4921394 Shew_1962 Shewanella loihica PV-4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001094087.1 2267440 R 323850 CDS YP_001094088.1 127512891 4921395 complement(2269106..2269282) 1 NC_009092.1 KEGG: shm:Shewmr7_2043 hypothetical protein; hypothetical protein 2269282 4921395 Shew_1963 Shewanella loihica PV-4 hypothetical protein YP_001094088.1 2269106 R 323850 CDS YP_001094089.1 127512892 4921396 2269513..2269845 1 NC_009092.1 KEGG: son:SO2391 hypothetical protein; hypothetical protein 2269845 4921396 Shew_1964 Shewanella loihica PV-4 hypothetical protein YP_001094089.1 2269513 D 323850 CDS YP_001094090.1 127512893 4921397 2269857..2271170 1 NC_009092.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2271170 pssA 4921397 pssA Shewanella loihica PV-4 phosphatidylserine synthase YP_001094090.1 2269857 D 323850 CDS YP_001094091.1 127512894 4921398 2271340..2272089 1 NC_009092.1 PFAM: DTW domain containing protein; KEGG: sdn:Sden_1780 hypothetical protein; DTW domain-containing protein 2272089 4921398 Shew_1966 Shewanella loihica PV-4 DTW domain-containing protein YP_001094091.1 2271340 D 323850 CDS YP_001094092.1 127512895 4921399 complement(2272733..2273950) 1 NC_009092.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfr:Sfri_2093 amidohydrolase; amidohydrolase 2273950 4921399 Shew_1967 Shewanella loihica PV-4 amidohydrolase YP_001094092.1 2272733 R 323850 CDS YP_001094093.1 127512896 4921400 complement(2274225..2275367) 1 NC_009092.1 PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase; beta-lactamase 2275367 4921400 Shew_1968 Shewanella loihica PV-4 beta-lactamase YP_001094093.1 2274225 R 323850 CDS YP_001094094.1 127512897 4921401 complement(2275612..2276211) 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO1416 DNA-binding response regulator; two component LuxR family transcriptional regulator 2276211 4921401 Shew_1969 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001094094.1 2275612 R 323850 CDS YP_001094095.1 127512898 4921402 complement(2276204..2277934) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO1417 sensor histidine kinase; histidine kinase 2277934 4921402 Shew_1970 Shewanella loihica PV-4 histidine kinase YP_001094095.1 2276204 R 323850 CDS YP_001094096.1 127512899 4921403 complement(2278482..2279660) 1 NC_009092.1 PFAM: ApbE family lipoprotein; KEGG: son:SO1418 ApbE family protein; ApbE family lipoprotein 2279660 4921403 Shew_1971 Shewanella loihica PV-4 ApbE family lipoprotein YP_001094096.1 2278482 R 323850 CDS YP_001094097.1 127512900 4921404 2279858..2281207 1 NC_009092.1 PFAM: FMN-binding domain protein; KEGG: son:SO1419 hypothetical protein; FMN-binding domain-containing protein 2281207 4921404 Shew_1972 Shewanella loihica PV-4 FMN-binding domain-containing protein YP_001094097.1 2279858 D 323850 CDS YP_001094098.1 127512901 4921405 2281228..2282277 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: son:SO1420 outer membrane porin, putative; porin 2282277 4921405 Shew_1973 Shewanella loihica PV-4 porin YP_001094098.1 2281228 D 323850 CDS YP_001094099.1 127512902 4921406 2282437..2283003 1 NC_009092.1 KEGG: cps:CPS_0919 hypothetical protein; hypothetical protein 2283003 4921406 Shew_1974 Shewanella loihica PV-4 hypothetical protein YP_001094099.1 2282437 D 323850 CDS YP_001094100.1 127512903 4921003 2283239..2284159 1 NC_009092.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2284159 4921003 Shew_1975 Shewanella loihica PV-4 putative manganese-dependent inorganic pyrophosphatase YP_001094100.1 2283239 D 323850 CDS YP_001094101.1 127512904 4921004 complement(2284251..2286653) 1 NC_009092.1 KEGG: ppr:PBPRB0364 putative ATP-dependent protease La-relatedprotein; putative ATP-dependent protease La-relatedprotein 2286653 4921004 Shew_1976 Shewanella loihica PV-4 putative ATP-dependent protease La-relatedprotein YP_001094101.1 2284251 R 323850 CDS YP_001094102.1 127512905 4921005 2286966..2287901 1 NC_009092.1 KEGG: cps:CPS_3923 sensory box/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2287901 4921005 Shew_1977 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase YP_001094102.1 2286966 D 323850 CDS YP_001094103.1 127512906 4921006 2288325..2289239 1 NC_009092.1 KEGG: vpa:VP1677 hypothetical protein; hypothetical protein 2289239 4921006 Shew_1978 Shewanella loihica PV-4 hypothetical protein YP_001094103.1 2288325 D 323850 CDS YP_001094104.1 127512907 4921007 2289313..2290248 1 NC_009092.1 KEGG: vpa:VP1678 putative dienelactone hydrolase and related enzymes; putative dienelactone hydrolase-related enzyme 2290248 4921007 Shew_1979 Shewanella loihica PV-4 putative dienelactone hydrolase-related enzyme YP_001094104.1 2289313 D 323850 CDS YP_001094105.1 127512908 4921008 2290386..2291042 1 NC_009092.1 KEGG: vpa:VP1679 hypothetical protein; hypothetical protein 2291042 4921008 Shew_1980 Shewanella loihica PV-4 hypothetical protein YP_001094105.1 2290386 D 323850 CDS YP_001094106.1 127512909 4921009 2291029..2291928 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfl:PFL_2378 transcriptional regulator, AraC family; AraC family transcriptional regulator 2291928 4921009 Shew_1981 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001094106.1 2291029 D 323850 CDS YP_001094107.1 127512910 4921010 complement(2293640..2294911) 1 NC_009092.1 PFAM: phage integrase family protein; KEGG: shm:Shewmr7_1973 phage integrase family protein; phage integrase family protein 2294911 4921010 Shew_1982 Shewanella loihica PV-4 phage integrase family protein YP_001094107.1 2293640 R 323850 CDS YP_001094108.1 127512911 4921011 2295234..2296805 1 NC_009092.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_1971 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 2296805 4921011 Shew_1983 Shewanella loihica PV-4 response regulator receiver modulated metal dependent phosphohydrolase YP_001094108.1 2295234 D 323850 CDS YP_001094109.1 127512912 4921012 complement(2296998..2297495) 1 NC_009092.1 KEGG: sfr:Sfri_2009 hypothetical protein; hypothetical protein 2297495 4921012 Shew_1984 Shewanella loihica PV-4 hypothetical protein YP_001094109.1 2296998 R 323850 CDS YP_001094110.1 127512913 4921013 2297760..2299187 1 NC_009092.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2299187 4921013 Shew_1985 Shewanella loihica PV-4 cbb3-type cytochrome c oxidase subunit I YP_001094110.1 2297760 D 323850 CDS YP_001094111.1 127512914 4921014 2299200..2299805 1 NC_009092.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2299805 4921014 Shew_1986 Shewanella loihica PV-4 cbb3-type cytochrome c oxidase subunit II YP_001094111.1 2299200 D 323850 CDS YP_001094112.1 127512915 4921015 2299821..2299988 1 NC_009092.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: sdn:Sden_1849 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2299988 4921015 Shew_1987 Shewanella loihica PV-4 cbb3-type cytochrome oxidase subunit YP_001094112.1 2299821 D 323850 CDS YP_001094113.1 127512916 4921016 2299988..2300959 1 NC_009092.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_1966 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2300959 4921016 Shew_1988 Shewanella loihica PV-4 cytochrome c oxidase, cbb3-type subunit III YP_001094113.1 2299988 D 323850 CDS YP_001094114.1 127512917 4920953 2301070..2301549 1 NC_009092.1 KEGG: son:SO2360 hypothetical protein; hypothetical protein 2301549 4920953 Shew_1989 Shewanella loihica PV-4 hypothetical protein YP_001094114.1 2301070 D 323850 CDS YP_001094115.1 127512918 4920954 2301556..2303979 1 NC_009092.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase 2303979 4920954 Shew_1990 Shewanella loihica PV-4 heavy metal translocating P-type ATPase YP_001094115.1 2301556 D 323850 CDS YP_001094116.1 127512919 4920955 2303976..2304161 1 NC_009092.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: sdn:Sden_1845 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2304161 4920955 Shew_1991 Shewanella loihica PV-4 cbb3-type cytochrome oxidase maturation protein YP_001094116.1 2303976 D 323850 CDS YP_001094117.1 127512920 4920956 2304158..2304850 1 NC_009092.1 KEGG: shm:Shewmr7_1962 hypothetical protein; hypothetical protein 2304850 4920956 Shew_1992 Shewanella loihica PV-4 hypothetical protein YP_001094117.1 2304158 D 323850 CDS YP_001094118.1 127512921 4920957 2304906..2305655 1 NC_009092.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2305655 4920957 Shew_1993 Shewanella loihica PV-4 fumarate/nitrate reduction transcriptional regulator YP_001094118.1 2304906 D 323850 CDS YP_001094119.1 127512922 4920958 2305750..2306682 1 NC_009092.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2306682 4920958 Shew_1994 Shewanella loihica PV-4 universal stress protein UspE YP_001094119.1 2305750 D 323850 CDS YP_001094120.1 127512923 4920959 2306767..2307720 1 NC_009092.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2307720 4920959 Shew_1995 Shewanella loihica PV-4 C32 tRNA thiolase YP_001094120.1 2306767 D 323850 CDS YP_001094121.1 127512924 4920960 complement(2307800..2308423) 1 NC_009092.1 KEGG: she:Shewmr4_2017 hypothetical protein; hypothetical protein 2308423 4920960 Shew_1996 Shewanella loihica PV-4 hypothetical protein YP_001094121.1 2307800 R 323850 CDS YP_001094122.1 127512925 4920961 complement(2308401..2309273) 1 NC_009092.1 KEGG: she:Shewmr4_2018 bax protein, putative; bax protein 2309273 4920961 Shew_1997 Shewanella loihica PV-4 bax protein YP_001094122.1 2308401 R 323850 CDS YP_001094123.1 127512926 4920962 2309364..2310275 1 NC_009092.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein; hypothetical protein 2310275 4920962 Shew_1998 Shewanella loihica PV-4 hypothetical protein YP_001094123.1 2309364 D 323850 CDS YP_001094124.1 127512927 4920963 complement(2310338..2311531) 1 NC_009092.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2311531 4920963 Shew_1999 Shewanella loihica PV-4 aromatic amino acid aminotransferase YP_001094124.1 2310338 R 323850 CDS YP_001094125.1 127512928 4921685 complement(2312470..2313906) 1 NC_009092.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2313906 4921685 Shew_2000 Shewanella loihica PV-4 glyceraldehyde-3-phosphate dehydrogenase YP_001094125.1 2312470 R 323850 CDS YP_001094126.1 127512929 4920965 2314143..2314949 1 NC_009092.1 KEGG: sfr:Sfri_1941 hypothetical protein; hypothetical protein 2314949 4920965 Shew_2001 Shewanella loihica PV-4 hypothetical protein YP_001094126.1 2314143 D 323850 CDS YP_001094127.1 127512930 4920966 2315161..2316171 1 NC_009092.1 KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 2316171 4920966 Shew_2002 Shewanella loihica PV-4 glyceraldehyde-3-phosphate dehydrogenase, type I YP_001094127.1 2315161 D 323850 CDS YP_001094128.1 127512931 4920967 complement(2316289..2316621) 1 NC_009092.1 hypothetical protein 2316621 4920967 Shew_2003 Shewanella loihica PV-4 hypothetical protein YP_001094128.1 2316289 R 323850 CDS YP_001094129.1 127512932 4924255 complement(2316824..2317099) 1 NC_009092.1 KEGG: vfi:VF0709 hypothetical protein; hypothetical protein 2317099 4924255 Shew_2004 Shewanella loihica PV-4 hypothetical protein YP_001094129.1 2316824 R 323850 CDS YP_001094130.1 127512933 4924256 complement(2317214..2318545) 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_0489 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2318545 4924256 Shew_2005 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001094130.1 2317214 R 323850 CDS YP_001094131.1 127512934 4924257 complement(2318606..2319172) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3397 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2319172 4924257 Shew_2006 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094131.1 2318606 R 323850 CDS YP_001094132.1 127512935 4924258 2319294..2320373 1 NC_009092.1 KEGG: sdn:Sden_0075 hypothetical protein; hypothetical protein 2320373 4924258 Shew_2007 Shewanella loihica PV-4 hypothetical protein YP_001094132.1 2319294 D 323850 CDS YP_001094133.1 127512936 4924259 complement(2320455..2321150) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vfi:VF1658 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2321150 4924259 Shew_2008 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001094133.1 2320455 R 323850 CDS YP_001094134.1 127512937 4924260 2321387..2322466 1 NC_009092.1 KEGG: pat:Patl_3439 hypothetical protein; hypothetical protein 2322466 4924260 Shew_2009 Shewanella loihica PV-4 hypothetical protein YP_001094134.1 2321387 D 323850 CDS YP_001094135.1 127512938 4924261 2323065..2324252 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sdn:Sden_1711 secretion protein HlyD; RND family efflux transporter MFP subunit 2324252 4924261 Shew_2010 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001094135.1 2323065 D 323850 CDS YP_001094136.1 127512939 4924262 2324259..2327441 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_1929 acriflavin resistance protein; acriflavin resistance protein 2327441 4924262 Shew_2011 Shewanella loihica PV-4 acriflavin resistance protein YP_001094136.1 2324259 D 323850 CDS YP_001094137.1 127512940 4921686 complement(2327793..2329085) 1 NC_009092.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2329085 4921686 Shew_2012 Shewanella loihica PV-4 inner membrane transport protein YdhC YP_001094137.1 2327793 R 323850 CDS YP_001094138.1 127512941 4924264 2329217..2330119 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1974 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2330119 4924264 Shew_2013 Shewanella loihica PV-4 putative DNA-binding transcriptional regulator YP_001094138.1 2329217 D 323850 CDS YP_001094139.1 127512942 4924265 2330344..2331003 1 NC_009092.1 PFAM: protein of unknown function UPF0005; KEGG: shm:Shewmr7_2003 protein of unknown function UPF0005; hypothetical protein 2331003 4924265 Shew_2014 Shewanella loihica PV-4 hypothetical protein YP_001094139.1 2330344 D 323850 CDS YP_001094140.1 127512943 4924266 2331189..2331578 1 NC_009092.1 PFAM: DsrE family protein; KEGG: she:Shewmr4_1972 DsrE family protein; DsrE family protein 2331578 4924266 Shew_2015 Shewanella loihica PV-4 DsrE family protein YP_001094140.1 2331189 D 323850 CDS YP_001094141.1 127512944 4924267 2331612..2331971 1 NC_009092.1 PFAM: DsrE family protein; KEGG: shm:Shewmr7_2005 DsrE family protein; DsrE family protein 2331971 4924267 Shew_2016 Shewanella loihica PV-4 DsrE family protein YP_001094141.1 2331612 D 323850 CDS YP_001094142.1 127512945 4924268 2331971..2332252 1 NC_009092.1 KEGG: sdn:Sden_1806 DsrH like protein; DsrH like protein 2332252 4924268 Shew_2017 Shewanella loihica PV-4 DsrH like protein YP_001094142.1 2331971 D 323850 CDS YP_001094143.1 127512946 4923857 2332261..2332584 1 NC_009092.1 PFAM: DsrC family protein; KEGG: sdn:Sden_1805 DsrC-like protein; DsrC family protein 2332584 4923857 Shew_2018 Shewanella loihica PV-4 DsrC family protein YP_001094143.1 2332261 D 323850 CDS YP_001094144.1 127512947 4923858 complement(2332665..2332784) 1 NC_009092.1 KEGG: son:SO2311 hypothetical protein; hypothetical protein 2332784 4923858 Shew_2019 Shewanella loihica PV-4 hypothetical protein YP_001094144.1 2332665 R 323850 CDS YP_001094145.1 127512948 4923859 complement(2332809..2334095) 1 NC_009092.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2334095 4923859 Shew_2020 Shewanella loihica PV-4 seryl-tRNA synthetase YP_001094145.1 2332809 R 323850 CDS YP_001094146.1 127512949 4923860 complement(2334115..2334489) 1 NC_009092.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2334489 4923860 Shew_2021 Shewanella loihica PV-4 camphor resistance protein CrcB YP_001094146.1 2334115 R 323850 CDS YP_001094147.1 127512950 4923861 complement(2334482..2335813) 1 NC_009092.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2011 AAA ATPase, central domain protein; recombination factor protein RarA 2335813 4923861 Shew_2022 Shewanella loihica PV-4 recombination factor protein RarA YP_001094147.1 2334482 R 323850 CDS YP_001094148.1 127512951 4923862 complement(2335872..2336498) 1 NC_009092.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shm:Shewmr7_2012 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2336498 4923862 Shew_2023 Shewanella loihica PV-4 outer membrane lipoprotein carrier protein LolA YP_001094148.1 2335872 R 323850 CDS YP_001094149.1 127512952 4923863 complement(2336656..2339181) 1 NC_009092.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: she:Shewmr4_1963 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2339181 4923863 Shew_2024 Shewanella loihica PV-4 cell division protein FtsK YP_001094149.1 2336656 R 323850 CDS YP_001094150.1 127512953 4923864 complement(2339364..2339867) 1 NC_009092.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2339867 4923864 Shew_2025 Shewanella loihica PV-4 leucine-responsive transcriptional regulator YP_001094150.1 2339364 R 323850 CDS YP_001094151.1 127512954 4923865 2340047..2341162 1 NC_009092.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: shm:Shewmr7_2015 alanine dehydrogenase; alanine dehydrogenase 2341162 4923865 Shew_2026 Shewanella loihica PV-4 alanine dehydrogenase YP_001094151.1 2340047 D 323850 CDS YP_001094152.1 127512955 4923866 2341219..2341938 1 NC_009092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: sfr:Sfri_1793 alanine dehydrogenase; NAD(P) transhydrogenase subunit alpha 2341938 4923866 Shew_2027 Shewanella loihica PV-4 NAD(P) transhydrogenase subunit alpha YP_001094152.1 2341219 D 323850 CDS YP_001094153.1 127512956 4923867 2342070..2343020 1 NC_009092.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1959 thioredoxin reductase; thioredoxin reductase 2343020 4923867 Shew_2028 Shewanella loihica PV-4 thioredoxin reductase YP_001094153.1 2342070 D 323850 CDS YP_001094154.1 127512957 4923868 complement(2343311..2343670) 1 NC_009092.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2343670 rplT 4923868 rplT Shewanella loihica PV-4 50S ribosomal protein L20 YP_001094154.1 2343311 R 323850 CDS YP_001094155.1 127512958 4923869 complement(2343689..2343883) 1 NC_009092.1 PFAM: ribosomal protein L35; KEGG: sfr:Sfri_2026 ribosomal protein L35; 50S ribosomal protein L35 2343883 rpmI 4923869 rpmI Shewanella loihica PV-4 50S ribosomal protein L35 YP_001094155.1 2343689 R 323850 CDS YP_001094156.1 127512959 4923870 complement(2343971..2344492) 1 NC_009092.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2344492 4923870 Shew_2031 Shewanella loihica PV-4 translation initiation factor IF-3 YP_001094156.1 2343971 R 323850 CDS YP_001094157.1 127512960 4923871 complement(2344517..2346445) 1 NC_009092.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2346445 4923871 Shew_2032 Shewanella loihica PV-4 threonyl-tRNA synthetase YP_001094157.1 2344517 R 323850 CDS YP_001094158.1 127512961 4923762 2346761..2347036 1 NC_009092.1 hypothetical protein 2347036 4923762 Shew_2033 Shewanella loihica PV-4 hypothetical protein YP_001094158.1 2346761 D 323850 CDS YP_001094159.1 127512962 4923763 2347187..2347933 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2986 pteridine reductase; short-chain dehydrogenase/reductase SDR 2347933 4923763 Shew_2034 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001094159.1 2347187 D 323850 CDS YP_001094160.1 127512963 4923764 2347930..2348130 1 NC_009092.1 KEGG: shm:Shewmr7_2023 hypothetical protein; hypothetical protein 2348130 4923764 Shew_2035 Shewanella loihica PV-4 hypothetical protein YP_001094160.1 2347930 D 323850 CDS YP_001094161.1 127512964 4923765 complement(2348339..2348950) 1 NC_009092.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2348950 4923765 Shew_2036 Shewanella loihica PV-4 riboflavin synthase subunit alpha YP_001094161.1 2348339 R 323850 CDS YP_001094162.1 127512965 4923766 2348979..2350364 1 NC_009092.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein 2350364 4923766 Shew_2037 Shewanella loihica PV-4 MATE efflux family protein YP_001094162.1 2348979 D 323850 CDS YP_001094163.1 127512966 4921688 complement(2350830..2351273) 1 NC_009092.1 hypothetical protein 2351273 4921688 Shew_2038 Shewanella loihica PV-4 hypothetical protein YP_001094163.1 2350830 R 323850 CDS YP_001094164.1 127512967 4923768 2351567..2354269 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: she:Shewmr4_2098 CoA-binding domain protein; N-acetyltransferase GCN5 2354269 4923768 Shew_2039 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094164.1 2351567 D 323850 CDS YP_001094165.1 127512968 4923769 complement(2354424..2355467) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_1872 diguanylate cyclase; diguanylate cyclase 2355467 4923769 Shew_2040 Shewanella loihica PV-4 diguanylate cyclase YP_001094165.1 2354424 R 323850 CDS YP_001094166.1 127512969 4923770 complement(2355602..2357230) 1 NC_009092.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; hypothetical protein 2357230 4923770 Shew_2041 Shewanella loihica PV-4 hypothetical protein YP_001094166.1 2355602 R 323850 CDS YP_001094167.1 127512970 4923771 complement(2357797..2358210) 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: ppr:PBPRA1008 putative transcriptional regulator, MarR family; MarR family transcriptional regulator 2358210 4923771 Shew_2042 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001094167.1 2357797 R 323850 CDS YP_001094168.1 127512971 4923772 complement(2358253..2359341) 1 NC_009092.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_1868 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2359341 4923772 Shew_2043 Shewanella loihica PV-4 cation diffusion facilitator family transporter YP_001094168.1 2358253 R 323850 CDS YP_001094169.1 127512972 4923773 2359742..2360299 1 NC_009092.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2360299 4923773 Shew_2044 Shewanella loihica PV-4 ecotin YP_001094169.1 2359742 D 323850 CDS YP_001094170.1 127512973 4923774 complement(2360402..2361043) 1 NC_009092.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2361043 4923774 Shew_2045 Shewanella loihica PV-4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_001094170.1 2360402 R 323850 CDS YP_001094171.1 127512974 4923775 complement(2361065..2362891) 1 NC_009092.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2362891 4923775 Shew_2046 Shewanella loihica PV-4 phosphogluconate dehydratase YP_001094171.1 2361065 R 323850 CDS YP_001094172.1 127512975 4923731 complement(2362901..2363599) 1 NC_009092.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase 2363599 4923731 Shew_2047 Shewanella loihica PV-4 6-phosphogluconolactonase YP_001094172.1 2362901 R 323850 CDS YP_001094173.1 127512976 4923732 complement(2363612..2365084) 1 NC_009092.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2365084 4923732 Shew_2048 Shewanella loihica PV-4 glucose-6-phosphate 1-dehydrogenase YP_001094173.1 2363612 R 323850 CDS YP_001094174.1 127512977 4923733 2365393..2366247 1 NC_009092.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2366247 4923733 Shew_2049 Shewanella loihica PV-4 DNA-binding transcriptional regulator HexR YP_001094174.1 2365393 D 323850 CDS YP_001094175.1 127512978 4923734 2366431..2367870 1 NC_009092.1 PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase 2367870 4923734 Shew_2050 Shewanella loihica PV-4 pyruvate kinase YP_001094175.1 2366431 D 323850 CDS YP_001094176.1 127512979 4923735 complement(2368011..2370287) 1 NC_009092.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2370287 4923735 Shew_2051 Shewanella loihica PV-4 acyl-CoA dehydrogenase YP_001094176.1 2368011 R 323850 CDS YP_001094177.1 127512980 4923736 complement(2370296..2370934) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family; TetR family transcriptional regulator 2370934 4923736 Shew_2052 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001094177.1 2370296 R 323850 CDS YP_001094178.1 127512981 4923737 2371154..2373058 1 NC_009092.1 PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: she:Shewmr4_2051 peptidyl-dipeptidase A; peptidyl-dipeptidase A 2373058 4923737 Shew_2053 Shewanella loihica PV-4 peptidyl-dipeptidase A YP_001094178.1 2371154 D 323850 CDS YP_001094179.1 127512982 4923738 complement(2373213..2373803) 1 NC_009092.1 PFAM: Smr protein/MutS2; KEGG: shm:Shewmr7_1923 Smr protein/MutS2; Smr protein/MutS2 2373803 4923738 Shew_2054 Shewanella loihica PV-4 Smr protein/MutS2 YP_001094179.1 2373213 R 323850 CDS YP_001094180.1 127512983 4923739 2374292..2374858 1 NC_009092.1 KEGG: shm:Shewmr7_1922 hypothetical protein; hypothetical protein 2374858 4923739 Shew_2055 Shewanella loihica PV-4 hypothetical protein YP_001094180.1 2374292 D 323850 CDS YP_001094181.1 127512984 4923740 2374851..2375330 1 NC_009092.1 PFAM: SEC-C motif domain protein; KEGG: she:Shewmr4_2054 sec-C motif domain protein; SecC motif-containing protein 2375330 4923740 Shew_2056 Shewanella loihica PV-4 SecC motif-containing protein YP_001094181.1 2374851 D 323850 CDS YP_001094182.1 127512985 4923741 complement(2375454..2377643) 1 NC_009092.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_2055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2377643 4923741 Shew_2057 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001094182.1 2375454 R 323850 CDS YP_001094183.1 127512986 4923742 complement(2377803..2378090) 1 NC_009092.1 KEGG: shm:Shewmr7_1919 hypothetical protein; hypothetical protein 2378090 4923742 Shew_2058 Shewanella loihica PV-4 hypothetical protein YP_001094183.1 2377803 R 323850 CDS YP_001094184.1 127512987 4923743 complement(2378163..2378651) 1 NC_009092.1 KEGG: she:Shewmr4_2057 hypothetical protein; hypothetical protein 2378651 4923743 Shew_2059 Shewanella loihica PV-4 hypothetical protein YP_001094184.1 2378163 R 323850 CDS YP_001094185.1 127512988 4921691 2379396..2380457 1 NC_009092.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sdn:Sden_2013 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 2380457 4921691 Shew_2060 Shewanella loihica PV-4 pyridoxal-5'-phosphate-dependent protein subunit beta YP_001094185.1 2379396 D 323850 CDS YP_001094186.1 127512989 4923425 complement(2380599..2381267) 1 NC_009092.1 PFAM: Radical SAM domain protein; KEGG: shm:Shewmr7_1917 radical activating enzyme; radical SAM domain-containing protein 2381267 4923425 Shew_2061 Shewanella loihica PV-4 radical SAM domain-containing protein YP_001094186.1 2380599 R 323850 CDS YP_001094187.1 127512990 4923426 2381452..2382135 1 NC_009092.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: she:Shewmr4_2059 ExsB protein; exsB protein 2382135 4923426 Shew_2062 Shewanella loihica PV-4 exsB protein YP_001094187.1 2381452 D 323850 CDS YP_001094188.1 127512991 4923427 2382129..2382713 1 NC_009092.1 PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein; rhomboid family protein 2382713 4923427 Shew_2063 Shewanella loihica PV-4 rhomboid family protein YP_001094188.1 2382129 D 323850 CDS YP_001094189.1 127512992 4923428 complement(2382840..2384858) 1 NC_009092.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2384858 4923428 Shew_2064 Shewanella loihica PV-4 excinuclease ABC subunit B YP_001094189.1 2382840 R 323850 CDS YP_001094190.1 127512993 4921190 2386115..2388043 1 NC_009092.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_2063 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 2388043 4921190 Shew_2065 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001094190.1 2386115 D 323850 CDS YP_001094191.1 127512994 4923430 2388127..2388705 1 NC_009092.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E 2388705 4923430 Shew_2066 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit E YP_001094191.1 2388127 D 323850 CDS YP_001094192.1 127512995 4923431 2388708..2389277 1 NC_009092.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: shm:Shewmr7_1910 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B 2389277 4923431 Shew_2067 Shewanella loihica PV-4 RnfABCDGE type electron transport complex subunit B YP_001094192.1 2388708 D 323850 CDS YP_001094193.1 127512996 4923432 2389271..2391883 1 NC_009092.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2391883 4923432 Shew_2068 Shewanella loihica PV-4 electron transport complex protein RnfC YP_001094193.1 2389271 D 323850 CDS YP_001094194.1 127512997 4923433 2391886..2392938 1 NC_009092.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2392938 rnfD 4923433 rnfD Shewanella loihica PV-4 electron transport complex protein RnfD YP_001094194.1 2391886 D 323850 CDS YP_001094195.1 127512998 4923434 2392959..2393597 1 NC_009092.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2393597 4923434 Shew_2070 Shewanella loihica PV-4 electron transport complex protein RnfG YP_001094195.1 2392959 D 323850 CDS YP_001094196.1 127512999 4923435 2393590..2394288 1 NC_009092.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2394288 4923435 Shew_2071 Shewanella loihica PV-4 electron transport complex protein RsxE YP_001094196.1 2393590 D 323850 CDS YP_001094197.1 127513000 4923436 2394292..2394933 1 NC_009092.1 KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2394933 4923436 Shew_2072 Shewanella loihica PV-4 endonuclease III YP_001094197.1 2394292 D 323850 CDS YP_001094198.1 127513001 4923437 2395525..2395935 1 NC_009092.1 KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2395935 4923437 Shew_2073 Shewanella loihica PV-4 lactoylglutathione lyase YP_001094198.1 2395525 D 323850 CDS YP_001094199.1 127513002 4923438 complement(2395994..2398504) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2416 TonB-dependent receptor; TonB-dependent receptor 2398504 4923438 Shew_2074 Shewanella loihica PV-4 TonB-dependent receptor YP_001094199.1 2395994 R 323850 CDS YP_001094200.1 127513003 4923439 complement(2399610..2400623) 1 NC_009092.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2400623 ruvB 4923439 ruvB Shewanella loihica PV-4 Holliday junction DNA helicase RuvB YP_001094200.1 2399610 R 323850 CDS YP_001094201.1 127513004 4923612 complement(2400643..2401260) 1 NC_009092.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2401260 ruvA 4923612 ruvA Shewanella loihica PV-4 Holliday junction DNA helicase RuvA YP_001094201.1 2400643 R 323850 CDS YP_001094202.1 127513005 4923613 complement(2401257..2401778) 1 NC_009092.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2401778 ruvC 4923613 ruvC Shewanella loihica PV-4 Holliday junction resolvase YP_001094202.1 2401257 R 323850 CDS YP_001094203.1 127513006 4923614 complement(2401786..2402532) 1 NC_009092.1 PFAM: protein of unknown function DUF28; KEGG: sdn:Sden_1886 protein of unknown function DUF28; hypothetical protein 2402532 4923614 Shew_2078 Shewanella loihica PV-4 hypothetical protein YP_001094203.1 2401786 R 323850 CDS YP_001094204.1 127513007 4923615 complement(2402603..2404381) 1 NC_009092.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2404381 aspS 4923615 aspS Shewanella loihica PV-4 aspartyl-tRNA synthetase YP_001094204.1 2402603 R 323850 CDS YP_001094205.1 127513008 4923616 complement(2404551..2407355) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein, family 3; KEGG: shm:Shewmr7_2081 diguanylate cyclase; diguanylate cyclase 2407355 4923616 Shew_2080 Shewanella loihica PV-4 diguanylate cyclase YP_001094205.1 2404551 R 323850 CDS YP_001094206.1 127513009 4923617 2407722..2408453 1 NC_009092.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2082 putative methyltransferase; putative methyltransferase 2408453 4923617 Shew_2081 Shewanella loihica PV-4 putative methyltransferase YP_001094206.1 2407722 D 323850 CDS YP_001094207.1 127513010 4923618 2408450..2409442 1 NC_009092.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_1895 putative methyltransferase; putative methyltransferase 2409442 4923618 Shew_2082 Shewanella loihica PV-4 putative methyltransferase YP_001094207.1 2408450 D 323850 CDS YP_001094208.1 127513011 4923619 2409468..2410205 1 NC_009092.1 PFAM: protein of unknown function DUF785; KEGG: she:Shewmr4_1894 protein of unknown function DUF785; hypothetical protein 2410205 4923619 Shew_2083 Shewanella loihica PV-4 hypothetical protein YP_001094208.1 2409468 D 323850 CDS YP_001094209.1 127513012 4923620 2410221..2411726 1 NC_009092.1 KEGG: shm:Shewmr7_2085 gonadoliberin III-related protein; gonadoliberin III-like protein 2411726 4923620 Shew_2084 Shewanella loihica PV-4 gonadoliberin III-like protein YP_001094209.1 2410221 D 323850 CDS YP_001094210.1 127513013 4923621 2411729..2412685 1 NC_009092.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: she:Shewmr4_1892 alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein 2412685 4923621 Shew_2085 Shewanella loihica PV-4 alpha-L-glutamate ligase-like protein YP_001094210.1 2411729 D 323850 CDS YP_001094211.1 127513014 4923622 2412648..2414423 1 NC_009092.1 KEGG: she:Shewmr4_1891 hypothetical protein; hypothetical protein 2414423 4923622 Shew_2086 Shewanella loihica PV-4 hypothetical protein YP_001094211.1 2412648 D 323850 CDS YP_001094212.1 127513015 4923623 2414398..2415549 1 NC_009092.1 KEGG: shm:Shewmr7_2088 hypothetical protein; hypothetical protein 2415549 4923623 Shew_2087 Shewanella loihica PV-4 hypothetical protein YP_001094212.1 2414398 D 323850 CDS YP_001094213.1 127513016 4923624 2415565..2416476 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2089 transcriptional regulator, LysR family; LysR family transcriptional regulator 2416476 4923624 Shew_2088 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094213.1 2415565 D 323850 CDS YP_001094214.1 127513017 4923625 complement(2416453..2417850) 1 NC_009092.1 KEGG: she:Shewmr4_1888 SrpA-related protein; SrpA-like protein 2417850 4923625 Shew_2089 Shewanella loihica PV-4 SrpA-like protein YP_001094214.1 2416453 R 323850 CDS YP_001094215.1 127513018 4923626 complement(2417854..2418123) 1 NC_009092.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2418123 4923626 Shew_2090 Shewanella loihica PV-4 methyl-accepting chemotaxis protein YP_001094215.1 2417854 R 323850 CDS YP_001094216.1 127513019 4923627 complement(2418226..2419344) 1 NC_009092.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2419344 thiH 4923627 thiH Shewanella loihica PV-4 thiamine biosynthesis protein ThiH YP_001094216.1 2418226 R 323850 CDS YP_001094217.1 127513020 4923628 complement(2419349..2420122) 1 NC_009092.1 PFAM: thiazole biosynthesis family protein; KEGG: shm:Shewmr7_2093 thiazole biosynthesis family protein; thiazole biosynthesis family protein 2420122 4923628 Shew_2092 Shewanella loihica PV-4 thiazole biosynthesis family protein YP_001094217.1 2419349 R 323850 CDS YP_001094218.1 127513021 4923629 complement(2420124..2420333) 1 NC_009092.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sdn:Sden_1773 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2420333 4923629 Shew_2093 Shewanella loihica PV-4 thiamine biosynthesis protein ThiS YP_001094218.1 2420124 R 323850 CDS YP_001094219.1 127513022 4923630 complement(2420326..2421174) 1 NC_009092.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative; UBA/THIF-type NAD/FAD binding protein 2421174 4923630 Shew_2094 Shewanella loihica PV-4 UBA/THIF-type NAD/FAD binding protein YP_001094219.1 2420326 R 323850 CDS YP_001094220.1 127513023 4923631 complement(2421161..2422906) 1 NC_009092.1 KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 2422906 4923631 Shew_2095 Shewanella loihica PV-4 phosphomethylpyrimidine kinase YP_001094220.1 2421161 R 323850 CDS YP_001094221.1 127513024 4923632 complement(2422909..2424960) 1 NC_009092.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2424960 4923632 Shew_2096 Shewanella loihica PV-4 thiamine biosynthesis protein ThiC YP_001094221.1 2422909 R 323850 CDS YP_001094222.1 127513025 4923633 complement(2425383..2426567) 1 NC_009092.1 KEGG: shm:Shewmr7_2098 hypothetical protein; hypothetical protein 2426567 4923633 Shew_2097 Shewanella loihica PV-4 hypothetical protein YP_001094222.1 2425383 R 323850 CDS YP_001094223.1 127513026 4923634 2426803..2427513 1 NC_009092.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: she:Shewmr4_1879 channel protein, hemolysin III family; hemolysin III family channel protein 2427513 4923634 Shew_2098 Shewanella loihica PV-4 hemolysin III family channel protein YP_001094223.1 2426803 D 323850 CDS YP_001094224.1 127513027 4923635 complement(2427487..2428056) 1 NC_009092.1 PFAM: DTW domain containing protein; KEGG: cps:CPS_2423 hypothetical protein; DTW domain-containing protein 2428056 4923635 Shew_2099 Shewanella loihica PV-4 DTW domain-containing protein YP_001094224.1 2427487 R 323850 CDS YP_001094225.1 127513028 4923636 complement(2428211..2431447) 1 NC_009092.1 KEGG: ilo:IL2566 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 2431447 4923636 Shew_2100 Shewanella loihica PV-4 DNA polymerase III subunit alpha YP_001094225.1 2428211 R 323850 CDS YP_001094226.1 127513029 4923637 complement(2431447..2433501) 1 NC_009092.1 KEGG: bxe:Bxe_A3165 hypothetical protein; hypothetical protein 2433501 4923637 Shew_2101 Shewanella loihica PV-4 hypothetical protein YP_001094226.1 2431447 R 323850 CDS YP_001094227.1 127513030 4923638 complement(2433502..2434332) 1 NC_009092.1 KEGG: tbd:Tbd_0830 hypothetical protein; hypothetical protein 2434332 4923638 Shew_2102 Shewanella loihica PV-4 hypothetical protein YP_001094227.1 2433502 R 323850 CDS YP_001094228.1 127513031 4923639 complement(2434634..2435125) 1 NC_009092.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2435125 def 4923639 def Shewanella loihica PV-4 peptide deformylase YP_001094228.1 2434634 R 323850 CDS YP_001094229.1 127513032 4923640 2435305..2437026 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_1452 hypothetical protein; major facilitator superfamily transporter 2437026 4923640 Shew_2104 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001094229.1 2435305 D 323850 CDS YP_001094230.1 127513033 4923589 2437406..2437756 1 NC_009092.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: shm:Shewmr7_2220 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2437756 4923589 Shew_2105 Shewanella loihica PV-4 methylated-DNA--protein-cysteine methyltransferase YP_001094230.1 2437406 D 323850 CDS YP_001094231.1 127513034 4923590 2437805..2438596 1 NC_009092.1 KEGG: shm:Shewmr7_2221 hypothetical protein; hypothetical protein 2438596 4923590 Shew_2106 Shewanella loihica PV-4 hypothetical protein YP_001094231.1 2437805 D 323850 CDS YP_001094232.1 127513035 4923591 complement(2438826..2439611) 1 NC_009092.1 PFAM: glutamine amidotransferase, class-II; KEGG: she:Shewmr4_2145 glutamine amidotransferase, class-II; glutamine amidotransferase, class-II 2439611 4923591 Shew_2107 Shewanella loihica PV-4 glutamine amidotransferase, class-II YP_001094232.1 2438826 R 323850 CDS YP_001094233.1 127513036 4923592 2439852..2442299 1 NC_009092.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2442299 fadE 4923592 fadE Shewanella loihica PV-4 acyl-CoA dehydrogenase YP_001094233.1 2439852 D 323850 CDS YP_001094234.1 127513037 4923593 complement(2442406..2444337) 1 NC_009092.1 PFAM: sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2224 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2444337 4923593 Shew_2109 Shewanella loihica PV-4 sodium/hydrogen exchanger YP_001094234.1 2442406 R 323850 CDS YP_001094235.1 127513038 4921193 complement(2445616..2446938) 1 NC_009092.1 KEGG: shm:Shewmr7_2233 hypothetical protein; hypothetical protein 2446938 4921193 Shew_2110 Shewanella loihica PV-4 hypothetical protein YP_001094235.1 2445616 R 323850 CDS YP_001094236.1 127513039 4923595 complement(2446949..2447677) 1 NC_009092.1 KEGG: shm:Shewmr7_2234 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2447677 4923595 Shew_2111 Shewanella loihica PV-4 DNA polymerase III subunit epsilon YP_001094236.1 2446949 R 323850 CDS YP_001094237.1 127513040 4923596 2447746..2448222 1 NC_009092.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2448222 rnhA 4923596 rnhA Shewanella loihica PV-4 ribonuclease H YP_001094237.1 2447746 D 323850 CDS YP_001094238.1 127513041 4923597 complement(2448267..2448989) 1 NC_009092.1 KEGG: son:SO2562 hypothetical protein; hypothetical protein 2448989 4923597 Shew_2113 Shewanella loihica PV-4 hypothetical protein YP_001094238.1 2448267 R 323850 CDS YP_001094239.1 127513042 4923598 2449127..2449909 1 NC_009092.1 PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_2238 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2449909 4923598 Shew_2114 Shewanella loihica PV-4 hydroxyacylglutathione hydrolase YP_001094239.1 2449127 D 323850 CDS YP_001094240.1 127513043 4923599 2450005..2451540 1 NC_009092.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: she:Shewmr4_2162 MLTD_N domain protein; lytic transglycosylase, catalytic 2451540 4923599 Shew_2115 Shewanella loihica PV-4 lytic transglycosylase, catalytic YP_001094240.1 2450005 D 323850 CDS YP_001094241.1 127513044 4923600 complement(2451758..2453602) 1 NC_009092.1 PFAM: AsmA family protein; KEGG: she:Shewmr4_2164 AsmA family protein; AsmA family protein 2453602 4923600 Shew_2116 Shewanella loihica PV-4 AsmA family protein YP_001094241.1 2451758 R 323850 CDS YP_001094242.1 127513045 4923601 complement(2453640..2454134) 1 NC_009092.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2454134 4923601 Shew_2117 Shewanella loihica PV-4 ribonuclease activity regulator protein RraA YP_001094242.1 2453640 R 323850 CDS YP_001094243.1 127513046 4923602 2454344..2454658 1 NC_009092.1 KEGG: son:SO2569 hypothetical protein; hypothetical protein 2454658 4923602 Shew_2118 Shewanella loihica PV-4 hypothetical protein YP_001094243.1 2454344 D 323850 CDS YP_001094244.1 127513047 4923485 complement(2454694..2456340) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: sfr:Sfri_2212 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2456340 4923485 Shew_2119 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001094244.1 2454694 R 323850 CDS YP_001094245.1 127513048 4923486 2456566..2457546 1 NC_009092.1 KEGG: vvy:VV2031 hypothetical protein; hypothetical protein 2457546 4923486 Shew_2120 Shewanella loihica PV-4 hypothetical protein YP_001094245.1 2456566 D 323850 CDS YP_001094246.1 127513049 4923487 2457561..2458919 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: sfr:Sfri_3387 diguanylate cyclase; diguanylate cyclase 2458919 4923487 Shew_2121 Shewanella loihica PV-4 diguanylate cyclase YP_001094246.1 2457561 D 323850 CDS YP_001094247.1 127513050 4923488 complement(2458916..2459533) 1 NC_009092.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2459533 4923488 Shew_2122 Shewanella loihica PV-4 putative sulfite oxidase subunit YedZ YP_001094247.1 2458916 R 323850 CDS YP_001094248.1 127513051 4923489 complement(2459572..2460582) 1 NC_009092.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2460582 4923489 Shew_2123 Shewanella loihica PV-4 putative sulfite oxidase subunit YedY YP_001094248.1 2459572 R 323850 CDS YP_001094249.1 127513052 4923490 2460779..2462254 1 NC_009092.1 PFAM: protein of unknown function DUF195; KEGG: shm:Shewmr7_1864 protein of unknown function DUF195; hypothetical protein 2462254 4923490 Shew_2124 Shewanella loihica PV-4 hypothetical protein YP_001094249.1 2460779 D 323850 CDS YP_001094250.1 127513053 4923491 2462346..2464283 1 NC_009092.1 PFAM: Lytic transglycosylase, catalytic; KEGG: sfr:Sfri_2529 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 2464283 4923491 Shew_2125 Shewanella loihica PV-4 lytic transglycosylase, catalytic YP_001094250.1 2462346 D 323850 CDS YP_001094251.1 127513054 4923492 2464627..2465538 1 NC_009092.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1856 ATPase associated with various cellular activities, AAA_3; ATPase 2465538 4923492 Shew_2126 Shewanella loihica PV-4 ATPase YP_001094251.1 2464627 D 323850 CDS YP_001094252.1 127513055 4923493 2465557..2466561 1 NC_009092.1 PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1855 protein of unknown function DUF58; hypothetical protein 2466561 4923493 Shew_2127 Shewanella loihica PV-4 hypothetical protein YP_001094252.1 2465557 D 323850 CDS YP_001094253.1 127513056 4923494 2466551..2468593 1 NC_009092.1 PFAM: transglutaminase domain protein; KEGG: she:Shewmr4_1776 transglutaminase domain protein; transglutaminase domain-containing protein 2468593 4923494 Shew_2128 Shewanella loihica PV-4 transglutaminase domain-containing protein YP_001094253.1 2466551 D 323850 CDS YP_001094254.1 127513057 4923495 2468812..2472390 1 NC_009092.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: she:Shewmr4_1775 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2472390 4923495 Shew_2129 Shewanella loihica PV-4 exodeoxyribonuclease V subunit gamma YP_001094254.1 2468812 D 323850 CDS YP_001094255.1 127513058 4923496 2472392..2476063 1 NC_009092.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: she:Shewmr4_1774 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2476063 4923496 Shew_2130 Shewanella loihica PV-4 exodeoxyribonuclease V subunit beta YP_001094255.1 2472392 D 323850 CDS YP_001094256.1 127513059 4923497 2476060..2478048 1 NC_009092.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: she:Shewmr4_1773 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 2478048 4923497 Shew_2131 Shewanella loihica PV-4 exodeoxyribonuclease V subunit alpha YP_001094256.1 2476060 D 323850 CDS YP_001094257.1 127513060 4923498 2478045..2478968 1 NC_009092.1 hypothetical protein 2478968 4923498 Shew_2132 Shewanella loihica PV-4 hypothetical protein YP_001094257.1 2478045 D 323850 CDS YP_001094258.1 127513061 4923499 2479110..2480114 1 NC_009092.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2480114 ddl 4923499 ddl Shewanella loihica PV-4 D-alanyl-alanine synthetase A YP_001094258.1 2479110 D 323850 CDS YP_001094259.1 127513062 4923354 complement(2480209..2480646) 1 NC_009092.1 PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 2480646 4923354 Shew_2134 Shewanella loihica PV-4 heat shock protein Hsp20 YP_001094259.1 2480209 R 323850 CDS YP_001094260.1 127513063 4923355 complement(2481047..2482750) 1 NC_009092.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 2482750 ushA 4923355 ushA Shewanella loihica PV-4 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_001094260.1 2481047 R 323850 CDS YP_001094261.1 127513064 4923356 complement(2483355..2484029) 1 NC_009092.1 PFAM: phospholipase/Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase 2484029 4923356 Shew_2136 Shewanella loihica PV-4 carboxylesterase YP_001094261.1 2483355 R 323850 CDS YP_001094262.1 127513065 4923357 2484221..2485240 1 NC_009092.1 PFAM: Glutathione S-transferase, C-terminal domain; KEGG: ppr:PBPRA2730 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 2485240 4923357 Shew_2137 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001094262.1 2484221 D 323850 CDS YP_001094263.1 127513066 4923358 complement(2485285..2485509) 1 NC_009092.1 KEGG: vch:VCA0579 hypothetical protein; hypothetical protein 2485509 4923358 Shew_2138 Shewanella loihica PV-4 hypothetical protein YP_001094263.1 2485285 R 323850 CDS YP_001094264.1 127513067 4923359 complement(2485607..2486089) 1 NC_009092.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sdn:Sden_2140 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 2486089 4923359 Shew_2139 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001094264.1 2485607 R 323850 CDS YP_001094265.1 127513068 4923360 complement(2486164..2487036) 1 NC_009092.1 KEGG: shm:Shewmr7_1781 hypothetical protein; hypothetical protein 2487036 4923360 Shew_2140 Shewanella loihica PV-4 hypothetical protein YP_001094265.1 2486164 R 323850 CDS YP_001094266.1 127513069 4923361 complement(2487318..2488505) 1 NC_009092.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase 2488505 4923361 Shew_2141 Shewanella loihica PV-4 lytic murein transglycosylase YP_001094266.1 2487318 R 323850 CDS YP_001094267.1 127513070 4923362 2488761..2489135 1 NC_009092.1 KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein 2489135 4923362 Shew_2142 Shewanella loihica PV-4 hypothetical protein YP_001094267.1 2488761 D 323850 CDS YP_001094268.1 127513071 4923363 2489193..2489876 1 NC_009092.1 KEGG: son:SO1990 hypothetical protein; hypothetical protein 2489876 4923363 Shew_2143 Shewanella loihica PV-4 hypothetical protein YP_001094268.1 2489193 D 323850 CDS YP_001094269.1 127513072 4923364 complement(2489931..2490884) 1 NC_009092.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV; response regulator receiver modulated CheW protein 2490884 4923364 Shew_2144 Shewanella loihica PV-4 response regulator receiver modulated CheW protein YP_001094269.1 2489931 R 323850 CDS YP_001094270.1 127513073 4923365 complement(2490993..2492606) 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: vvy:VVA1412 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 2492606 4923365 Shew_2145 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001094270.1 2490993 R 323850 CDS YP_001094271.1 127513074 4923366 2493096..2493269 1 NC_009092.1 KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein 2493269 4923366 Shew_2146 Shewanella loihica PV-4 hypothetical protein YP_001094271.1 2493096 D 323850 CDS YP_001094272.1 127513075 4923367 complement(2493419..2494345) 1 NC_009092.1 KEGG: she:Shewmr4_2279 hypothetical protein; hypothetical protein 2494345 4923367 Shew_2147 Shewanella loihica PV-4 hypothetical protein YP_001094272.1 2493419 R 323850 CDS YP_001094273.1 127513076 4923320 2494575..2494982 1 NC_009092.1 PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 2494982 4923320 Shew_2148 Shewanella loihica PV-4 hypothetical protein YP_001094273.1 2494575 D 323850 CDS YP_001094274.1 127513077 4923321 complement(2495069..2495929) 1 NC_009092.1 KEGG: she:Shewmr4_2283 conserved hypothetical ABC transporter protein; ABC transporter 2495929 4923321 Shew_2149 Shewanella loihica PV-4 ABC transporter YP_001094274.1 2495069 R 323850 CDS YP_001094275.1 127513078 4923322 2496066..2496293 1 NC_009092.1 KEGG: shm:Shewmr7_2356 integral membrane protein TerC; integral membrane protein TerC 2496293 4923322 Shew_2150 Shewanella loihica PV-4 integral membrane protein TerC YP_001094275.1 2496066 D 323850 CDS YP_001094276.1 127513079 4923323 complement(2496410..2496787) 1 NC_009092.1 KEGG: she:Shewmr4_2286 hypothetical protein; hypothetical protein 2496787 4923323 Shew_2151 Shewanella loihica PV-4 hypothetical protein YP_001094276.1 2496410 R 323850 CDS YP_001094277.1 127513080 4923324 2497142..2497486 1 NC_009092.1 KEGG: son:SO1968 hypothetical protein; hypothetical protein 2497486 4923324 Shew_2152 Shewanella loihica PV-4 hypothetical protein YP_001094277.1 2497142 D 323850 CDS YP_001094278.1 127513081 4923325 complement(2497592..2498497) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator 2498497 4923325 Shew_2153 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094278.1 2497592 R 323850 CDS YP_001094279.1 127513082 4923326 2498652..2499812 1 NC_009092.1 PFAM: homogentisate 1,2-dioxygenase; KEGG: shm:Shewmr7_2363 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2499812 4923326 Shew_2154 Shewanella loihica PV-4 homogentisate 1,2-dioxygenase YP_001094279.1 2498652 D 323850 CDS YP_001094280.1 127513083 4923327 2499904..2500944 1 NC_009092.1 KEGG: sdn:Sden_2163 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2500944 4923327 Shew_2155 Shewanella loihica PV-4 4-hydroxyphenylpyruvate dioxygenase YP_001094280.1 2499904 D 323850 CDS YP_001094281.1 127513084 4923328 2501071..2501688 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_2328 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2501688 4923328 Shew_2156 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001094281.1 2501071 D 323850 CDS YP_001094282.1 127513085 4923329 complement(2501729..2503096) 1 NC_009092.1 PFAM: protein of unknown function DUF482; KEGG: sdn:Sden_1656 protein of unknown function DUF482; hypothetical protein 2503096 4923329 Shew_2157 Shewanella loihica PV-4 hypothetical protein YP_001094282.1 2501729 R 323850 CDS YP_001094283.1 127513086 4923330 2503215..2504945 1 NC_009092.1 KEGG: she:Shewmr4_2297 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2504945 4923330 Shew_2158 Shewanella loihica PV-4 gamma-glutamyltransferase YP_001094283.1 2503215 D 323850 CDS YP_001094284.1 127513087 4923331 complement(2505029..2506600) 1 NC_009092.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: shm:Shewmr7_1220 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2506600 4923331 Shew_2159 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001094284.1 2505029 R 323850 CDS YP_001094285.1 127513088 4923332 complement(2506721..2508457) 1 NC_009092.1 KEGG: she:Shewmr4_2301 dipeptidase, putative; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; peptidase dimerisation domain protein; hypothetical protein 2508457 4923332 Shew_2160 Shewanella loihica PV-4 hypothetical protein YP_001094285.1 2506721 R 323850 CDS YP_001094286.1 127513089 4923333 2508721..2510901 1 NC_009092.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: she:Shewmr4_2302 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2510901 4923333 Shew_2161 Shewanella loihica PV-4 peptidyl-dipeptidase Dcp YP_001094286.1 2508721 D 323850 CDS YP_001094287.1 127513090 4923337 2511207..2513291 1 NC_009092.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 2513291 cpdB 4923337 cpdB Shewanella loihica PV-4 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_001094287.1 2511207 D 323850 CDS YP_001094288.1 127513091 4923338 2513415..2514017 1 NC_009092.1 PFAM: protein of unknown function DUF938; Methyltransferase type 11; KEGG: sfr:Sfri_2306 protein of unknown function DUF938; hypothetical protein 2514017 4923338 Shew_2163 Shewanella loihica PV-4 hypothetical protein YP_001094288.1 2513415 D 323850 CDS YP_001094289.1 127513092 4923339 complement(2514130..2515920) 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sfr:Sfri_2744 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2515920 4923339 Shew_2164 Shewanella loihica PV-4 acyl-CoA dehydrogenase domain-containing protein YP_001094289.1 2514130 R 323850 CDS YP_001094290.1 127513093 4923340 2516172..2517026 1 NC_009092.1 PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_2460 aldose 1-epimerase; aldose 1-epimerase 2517026 4923340 Shew_2165 Shewanella loihica PV-4 aldose 1-epimerase YP_001094290.1 2516172 D 323850 CDS YP_001094291.1 127513094 4923341 2517223..2521146 1 NC_009092.1 KEGG: she:Shewmr4_1791 hypothetical protein; hypothetical protein 2521146 4923341 Shew_2166 Shewanella loihica PV-4 hypothetical protein YP_001094291.1 2517223 D 323850 CDS YP_001094292.1 127513095 4923342 2521273..2521473 1 NC_009092.1 KEGG: son:SO2063 hypothetical protein; hypothetical protein 2521473 4923342 Shew_2167 Shewanella loihica PV-4 hypothetical protein YP_001094292.1 2521273 D 323850 CDS YP_001094293.1 127513096 4923343 2521495..2521815 1 NC_009092.1 PFAM: uncharacterized conserved protein UCP025560; KEGG: shm:Shewmr7_2188 uncharacterized conserved protein UCP025560; hypothetical protein 2521815 4923343 Shew_2168 Shewanella loihica PV-4 hypothetical protein YP_001094293.1 2521495 D 323850 CDS YP_001094294.1 127513097 4923344 complement(2522015..2522944) 1 NC_009092.1 KEGG: pat:Patl_2065 UspA; hypothetical protein 2522944 4923344 Shew_2169 Shewanella loihica PV-4 hypothetical protein YP_001094294.1 2522015 R 323850 CDS YP_001094295.1 127513098 4923345 complement(2523232..2526069) 1 NC_009092.1 PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_1534 PKD domain containing protein; endonuclease/exonuclease/phosphatase 2526069 4923345 Shew_2170 Shewanella loihica PV-4 endonuclease/exonuclease/phosphatase YP_001094295.1 2523232 R 323850 CDS YP_001094296.1 127513099 4923346 complement(2526494..2527540) 1 NC_009092.1 PFAM: peptidase T2, asparaginase 2; KEGG: shm:Shewmr7_2140 peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 2527540 4923346 Shew_2171 Shewanella loihica PV-4 peptidase T2, asparaginase 2 YP_001094296.1 2526494 R 323850 CDS YP_001094297.1 127513100 4923347 2527611..2529521 1 NC_009092.1 PFAM: surface antigen (D15); KEGG: she:Shewmr4_1836 surface antigen (D15); surface antigen (D15) 2529521 4923347 Shew_2172 Shewanella loihica PV-4 surface antigen (D15) YP_001094297.1 2527611 D 323850 CDS YP_001094298.1 127513101 4923348 2529518..2533417 1 NC_009092.1 PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein; hypothetical protein 2533417 4923348 Shew_2173 Shewanella loihica PV-4 hypothetical protein YP_001094298.1 2529518 D 323850 CDS YP_001094299.1 127513102 4923349 complement(2533507..2534268) 1 NC_009092.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2534268 4923349 Shew_2174 Shewanella loihica PV-4 fatty acid metabolism regulator YP_001094299.1 2533507 R 323850 CDS YP_001094300.1 127513103 4923350 2534567..2536162 1 NC_009092.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2536162 nhaB 4923350 nhaB Shewanella loihica PV-4 sodium/proton antiporter YP_001094300.1 2534567 D 323850 CDS YP_001094301.1 127513104 4923351 2536250..2536765 1 NC_009092.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2536765 4923351 Shew_2176 Shewanella loihica PV-4 disulfide bond formation protein B YP_001094301.1 2536250 D 323850 CDS YP_001094302.1 127513105 4923276 complement(2537678..2538274) 1 NC_009092.1 hypothetical protein 2538274 4923276 Shew_2177 Shewanella loihica PV-4 hypothetical protein YP_001094302.1 2537678 R 323850 CDS YP_001094303.1 127513106 4923277 complement(2538406..2538651) 1 NC_009092.1 hypothetical protein 2538651 4923277 Shew_2178 Shewanella loihica PV-4 hypothetical protein YP_001094303.1 2538406 R 323850 CDS YP_001094304.1 127513107 4923278 complement(2538800..2539717) 1 NC_009092.1 KEGG: mlo:msl8646 hypothetical protein; hypothetical protein 2539717 4923278 Shew_2179 Shewanella loihica PV-4 hypothetical protein YP_001094304.1 2538800 R 323850 CDS YP_001094305.1 127513108 4923279 complement(2539707..2540279) 1 NC_009092.1 KEGG: cte:CT0680 hypothetical protein; hypothetical protein 2540279 4923279 Shew_2180 Shewanella loihica PV-4 hypothetical protein YP_001094305.1 2539707 R 323850 CDS YP_001094306.1 127513109 4923280 complement(2541432..2541911) 1 NC_009092.1 PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_1632 uncharacterized conserved protein UCP006173; hypothetical protein 2541911 4923280 Shew_2181 Shewanella loihica PV-4 hypothetical protein YP_001094306.1 2541432 R 323850 CDS YP_001094307.1 127513110 4923281 complement(2541987..2542976) 1 NC_009092.1 KEGG: shm:Shewmr7_2248 putative transglycosylase; putative transglycosylase 2542976 4923281 Shew_2182 Shewanella loihica PV-4 putative transglycosylase YP_001094307.1 2541987 R 323850 CDS YP_001094308.1 127513111 4923282 complement(2543261..2543542) 1 NC_009092.1 PFAM: protein of unknown function DUF709; KEGG: sdn:Sden_1630 protein of unknown function DUF709; hypothetical protein 2543542 4923282 Shew_2183 Shewanella loihica PV-4 hypothetical protein YP_001094308.1 2543261 R 323850 CDS YP_001094309.1 127513112 4923283 2543669..2544334 1 NC_009092.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2544334 minC 4923283 minC Shewanella loihica PV-4 septum formation inhibitor YP_001094309.1 2543669 D 323850 CDS YP_001094310.1 127513113 4923284 2544359..2545168 1 NC_009092.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_2251 septum site-determining protein MinD; septum site-determining protein MinD 2545168 4923284 Shew_2185 Shewanella loihica PV-4 septum site-determining protein MinD YP_001094310.1 2544359 D 323850 CDS YP_001094311.1 127513114 4923285 2545171..2545431 1 NC_009092.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: sfr:Sfri_1735 cell division topological specificity factor MinE; cell division topological specificity factor MinE 2545431 4923285 Shew_2186 Shewanella loihica PV-4 cell division topological specificity factor MinE YP_001094311.1 2545171 D 323850 CDS YP_001094312.1 127513115 4923286 complement(2545541..2546647) 1 NC_009092.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D; ribonuclease D 2546647 4923286 Shew_2187 Shewanella loihica PV-4 ribonuclease D YP_001094312.1 2545541 R 323850 CDS YP_001094313.1 127513116 4923287 complement(2546738..2548411) 1 NC_009092.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2548411 4923287 Shew_2188 Shewanella loihica PV-4 long-chain-fatty-acid--CoA ligase YP_001094313.1 2546738 R 323850 CDS YP_001094314.1 127513117 4923288 complement(2548610..2549545) 1 NC_009092.1 KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold; alpha/beta hydrolase 2549545 4923288 Shew_2189 Shewanella loihica PV-4 alpha/beta hydrolase YP_001094314.1 2548610 R 323850 CDS YP_001094315.1 127513118 4923289 complement(2549548..2550396) 1 NC_009092.1 KEGG: sdn:Sden_1623 hypothetical protein; hypothetical protein 2550396 4923289 Shew_2190 Shewanella loihica PV-4 hypothetical protein YP_001094315.1 2549548 R 323850 CDS YP_001094316.1 127513119 4923105 complement(2550479..2551180) 1 NC_009092.1 KEGG: son:SO2584 hypothetical protein; hypothetical protein 2551180 4923105 Shew_2191 Shewanella loihica PV-4 hypothetical protein YP_001094316.1 2550479 R 323850 CDS YP_001094317.1 127513120 4923106 complement(2551326..2551697) 1 NC_009092.1 KEGG: sdn:Sden_1621 hypothetical protein; hypothetical protein 2551697 4923106 Shew_2192 Shewanella loihica PV-4 hypothetical protein YP_001094317.1 2551326 R 323850 CDS YP_001094318.1 127513121 4923107 complement(2551763..2552506) 1 NC_009092.1 PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease 2552506 4923107 Shew_2193 Shewanella loihica PV-4 peptidase M22, glycoprotease YP_001094318.1 2551763 R 323850 CDS YP_001094319.1 127513122 4923108 2552936..2553853 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_2651 protein of unknown function DUF6, transmembrane; hypothetical protein 2553853 4923108 Shew_2194 Shewanella loihica PV-4 hypothetical protein YP_001094319.1 2552936 D 323850 CDS YP_001094320.1 127513123 4923109 2553866..2555167 1 NC_009092.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0118 respiratory NADH dehydrogenase II; NADH dehydrogenase 2555167 4923109 Shew_2195 Shewanella loihica PV-4 NADH dehydrogenase YP_001094320.1 2553866 D 323850 CDS YP_001094321.1 127513124 4923110 complement(2555180..2557105) 1 NC_009092.1 SMART: helicase c2; DEAD-like helicases-like; KEGG: shm:Shewmr7_2172 helicase C2; helicase c2 2557105 4923110 Shew_2196 Shewanella loihica PV-4 helicase c2 YP_001094321.1 2555180 R 323850 CDS YP_001094322.1 127513125 4923111 2557577..2558476 1 NC_009092.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2558476 hisG 4923111 hisG Shewanella loihica PV-4 ATP phosphoribosyltransferase YP_001094322.1 2557577 D 323850 CDS YP_001094323.1 127513126 4923112 2558481..2559812 1 NC_009092.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2559812 hisD 4923112 hisD Shewanella loihica PV-4 histidinol dehydrogenase YP_001094323.1 2558481 D 323850 CDS YP_001094324.1 127513127 4923113 2559814..2560896 1 NC_009092.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2560896 4923113 Shew_2199 Shewanella loihica PV-4 histidinol-phosphate aminotransferase YP_001094324.1 2559814 D 323850 CDS YP_001094325.1 127513128 4923114 2560961..2562031 1 NC_009092.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2562031 4923114 Shew_2200 Shewanella loihica PV-4 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_001094325.1 2560961 D 323850 CDS YP_001094326.1 127513129 4923115 2562028..2562702 1 NC_009092.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2562702 hisH 4923115 hisH Shewanella loihica PV-4 imidazole glycerol phosphate synthase subunit HisH YP_001094326.1 2562028 D 323850 CDS YP_001094327.1 127513130 4923116 2562699..2563436 1 NC_009092.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2563436 4923116 Shew_2202 Shewanella loihica PV-4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001094327.1 2562699 D 323850 CDS YP_001094328.1 127513131 4923117 2563418..2564191 1 NC_009092.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2564191 4923117 Shew_2203 Shewanella loihica PV-4 imidazole glycerol phosphate synthase subunit HisF YP_001094328.1 2563418 D 323850 CDS YP_001094329.1 127513132 4923118 2564220..2564840 1 NC_009092.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2564840 4923118 Shew_2204 Shewanella loihica PV-4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_001094329.1 2564220 D 323850 CDS YP_001094330.1 127513133 4923119 2565206..2566408 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_0667 response regulator receiver domain protein (CheY-like); diguanylate cyclase 2566408 4923119 Shew_2205 Shewanella loihica PV-4 diguanylate cyclase YP_001094330.1 2565206 D 323850 CDS YP_001094331.1 127513134 4923027 2566806..2567546 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01757 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator 2567546 4923027 Shew_2206 Shewanella loihica PV-4 two component transcriptional regulator YP_001094331.1 2566806 D 323850 CDS YP_001094332.1 127513135 4923028 2567553..2569835 1 NC_009092.1 PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pha:PSHAa0111 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2569835 4923028 Shew_2207 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001094332.1 2567553 D 323850 CDS YP_001094333.1 127513136 4923029 2570346..2572163 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2572163 4923029 Shew_2208 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001094333.1 2570346 D 323850 CDS YP_001094334.1 127513137 4923030 2572977..2576453 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; PKD domain containing protein; Proprotein convertase, P; KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2576453 4923030 Shew_2209 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001094334.1 2572977 D 323850 CDS YP_001094335.1 127513138 4923031 2576535..2577746 1 NC_009092.1 PFAM: Proprotein convertase, P; KEGG: pha:PSHAb0200 putative secreted serine protease, subtilisin family, possibly excreted; proprotein convertase, P 2577746 4923031 Shew_2210 Shewanella loihica PV-4 proprotein convertase, P YP_001094335.1 2576535 D 323850 CDS YP_001094336.1 127513139 4923032 2578022..2579128 1 NC_009092.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 2579128 4923032 Shew_2211 Shewanella loihica PV-4 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001094336.1 2578022 D 323850 CDS YP_001094337.1 127513140 4923033 2579958..2582120 1 NC_009092.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: she:Shewmr4_1525 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2582120 4923033 Shew_2212 Shewanella loihica PV-4 peptidyl-dipeptidase Dcp YP_001094337.1 2579958 D 323850 CDS YP_001094338.1 127513141 4923034 complement(2582237..2583172) 1 NC_009092.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2583172 4923034 Shew_2213 Shewanella loihica PV-4 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_001094338.1 2582237 R 323850 CDS YP_001094339.1 127513142 4923035 complement(2583293..2583589) 1 NC_009092.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2583589 ihfA 4923035 ihfA Shewanella loihica PV-4 integration host factor subunit alpha YP_001094339.1 2583293 R 323850 CDS YP_001094340.1 127513143 4923036 complement(2583594..2585981) 1 NC_009092.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2585981 pheT 4923036 pheT Shewanella loihica PV-4 phenylalanyl-tRNA synthetase subunit beta YP_001094340.1 2583594 R 323850 CDS YP_001094341.1 127513144 4923037 complement(2585997..2587007) 1 NC_009092.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2587007 pheS 4923037 pheS Shewanella loihica PV-4 phenylalanyl-tRNA synthetase subunit alpha YP_001094341.1 2585997 R 323850 CDS YP_001094342.1 127513145 4923038 2587373..2588875 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2170 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2588875 4923038 Shew_2217 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001094342.1 2587373 D 323850 CDS YP_001094343.1 127513146 4923039 2589005..2591644 1 NC_009092.1 TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; KEGG: son:SO2889 sensory box histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 2591644 4923039 Shew_2218 Shewanella loihica PV-4 signal transduction histidine kinase regulating citrate/malate metabolism YP_001094343.1 2589005 D 323850 CDS YP_001094344.1 127513147 4923040 complement(2591703..2592629) 1 NC_009092.1 PFAM: protein of unknown function DUF785; KEGG: she:Shewmr4_1564 protein of unknown function DUF785; hypothetical protein 2592629 4923040 Shew_2219 Shewanella loihica PV-4 hypothetical protein YP_001094344.1 2591703 R 323850 CDS YP_001094345.1 127513148 4923216 complement(2592688..2593062) 1 NC_009092.1 KEGG: she:Shewmr4_1563 hypothetical protein; hypothetical protein 2593062 4923216 Shew_2220 Shewanella loihica PV-4 hypothetical protein YP_001094345.1 2592688 R 323850 CDS YP_001094346.1 127513149 4923217 complement(2593080..2593373) 1 NC_009092.1 hypothetical protein 2593373 4923217 Shew_2221 Shewanella loihica PV-4 hypothetical protein YP_001094346.1 2593080 R 323850 CDS YP_001094347.1 127513150 4923218 complement(2593467..2593817) 1 NC_009092.1 KEGG: son:SO2891 hypothetical protein; hypothetical protein 2593817 4923218 Shew_2222 Shewanella loihica PV-4 hypothetical protein YP_001094347.1 2593467 R 323850 CDS YP_001094348.1 127513151 4923219 complement(2593937..2594524) 1 NC_009092.1 PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein; hypothetical protein 2594524 4923219 Shew_2223 Shewanella loihica PV-4 hypothetical protein YP_001094348.1 2593937 R 323850 CDS YP_001094349.1 127513152 4923220 complement(2594700..2597396) 1 NC_009092.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2597396 4923220 Shew_2224 Shewanella loihica PV-4 DNA topoisomerase I YP_001094349.1 2594700 R 323850 CDS YP_001094350.1 127513153 4923221 2597707..2599044 1 NC_009092.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2599044 4923221 Shew_2225 Shewanella loihica PV-4 succinylarginine dihydrolase YP_001094350.1 2597707 D 323850 CDS YP_001094351.1 127513154 4923222 complement(2599683..2602142) 1 NC_009092.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein 2602142 4923222 Shew_2226 Shewanella loihica PV-4 Ig domain-containing protein YP_001094351.1 2599683 R 323850 CDS YP_001094352.1 127513155 4923223 2602359..2603678 1 NC_009092.1 PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_1657 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2603678 4923223 Shew_2227 Shewanella loihica PV-4 sodium:dicarboxylate symporter YP_001094352.1 2602359 D 323850 CDS YP_001094353.1 127513156 4923224 complement(2603816..2605120) 1 NC_009092.1 PFAM: PfkB domain protein; KEGG: shm:Shewmr7_2319 inosine kinase; inosine kinase 2605120 4923224 Shew_2228 Shewanella loihica PV-4 inosine kinase YP_001094353.1 2603816 R 323850 CDS YP_001094354.1 127513157 4923225 complement(2605318..2606331) 1 NC_009092.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 2606331 hemH 4923225 hemH Shewanella loihica PV-4 ferrochelatase YP_001094354.1 2605318 R 323850 CDS YP_001094355.1 127513158 4923226 complement(2606468..2607112) 1 NC_009092.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2607112 adk 4923226 adk Shewanella loihica PV-4 adenylate kinase YP_001094355.1 2606468 R 323850 CDS YP_001094356.1 127513159 4923227 complement(2607656..2608495) 1 NC_009092.1 PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_2322 thioredoxin domain; thioredoxin domain-containing protein 2608495 4923227 Shew_2231 Shewanella loihica PV-4 thioredoxin domain-containing protein YP_001094356.1 2607656 R 323850 CDS YP_001094357.1 127513160 4923228 complement(2608616..2610535) 1 NC_009092.1 molecular chaperone; heat shock protein 90 2610535 4923228 Shew_2232 Shewanella loihica PV-4 heat shock protein 90 YP_001094357.1 2608616 R 323850 CDS YP_001094358.1 127513161 4923229 complement(2610691..2611290) 1 NC_009092.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2611290 recR 4923229 recR Shewanella loihica PV-4 recombination protein RecR YP_001094358.1 2610691 R 323850 CDS YP_001094359.1 127513162 4923230 complement(2611293..2611622) 1 NC_009092.1 PFAM: conserved hypothetical protein 103; KEGG: sdn:Sden_2380 conserved hypothetical protein 103; hypothetical protein 2611622 4923230 Shew_2234 Shewanella loihica PV-4 hypothetical protein YP_001094359.1 2611293 R 323850 CDS YP_001094360.1 127513163 4922871 complement(2611845..2615186) 1 NC_009092.1 KEGG: shm:Shewmr7_2326 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 2615186 4922871 Shew_2235 Shewanella loihica PV-4 DNA polymerase III subunits gamma and tau YP_001094360.1 2611845 R 323850 CDS YP_001094361.1 127513164 4922872 complement(2615571..2616164) 1 NC_009092.1 KEGG: sdn:Sden_2382 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 2616164 4922872 Shew_2236 Shewanella loihica PV-4 adenine phosphoribosyltransferase YP_001094361.1 2615571 R 323850 CDS YP_001094362.1 127513165 4922873 complement(2616285..2616653) 1 NC_009092.1 PFAM: protein of unknown function DUF454; KEGG: shm:Shewmr7_2328 protein of unknown function DUF454; hypothetical protein 2616653 4922873 Shew_2237 Shewanella loihica PV-4 hypothetical protein YP_001094362.1 2616285 R 323850 CDS YP_001094363.1 127513166 4922874 complement(2616748..2616870) 1 NC_009092.1 KEGG: shm:Shewmr7_2329 hypothetical protein; hypothetical protein 2616870 4922874 Shew_2238 Shewanella loihica PV-4 hypothetical protein YP_001094363.1 2616748 R 323850 CDS YP_001094364.1 127513167 4922875 complement(2616973..2617716) 1 NC_009092.1 KEGG: sfr:Sfri_2411 hypothetical protein; hypothetical protein 2617716 4922875 Shew_2239 Shewanella loihica PV-4 hypothetical protein YP_001094364.1 2616973 R 323850 CDS YP_001094365.1 127513168 4922876 complement(2617717..2618553) 1 NC_009092.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_2412 protein of unknown function DUF692; hypothetical protein 2618553 4922876 Shew_2240 Shewanella loihica PV-4 hypothetical protein YP_001094365.1 2617717 R 323850 CDS YP_001094366.1 127513169 4922877 complement(2618656..2619096) 1 NC_009092.1 KEGG: sfr:Sfri_2413 hypothetical protein; hypothetical protein 2619096 4922877 Shew_2241 Shewanella loihica PV-4 hypothetical protein YP_001094366.1 2618656 R 323850 CDS YP_001094367.1 127513170 4922878 2619538..2620467 1 NC_009092.1 PFAM: dihydrouridine synthase, DuS; KEGG: cps:CPS_0906 NifR3/Smm1 family protein; dihydrouridine synthase, DuS 2620467 4922878 Shew_2242 Shewanella loihica PV-4 dihydrouridine synthase, DuS YP_001094367.1 2619538 D 323850 CDS YP_001094368.1 127513171 4922879 2620720..2621076 1 NC_009092.1 KEGG: shm:Shewmr7_2334 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 2621076 4922879 Shew_2243 Shewanella loihica PV-4 TraR/DksA family transcriptional regulator YP_001094368.1 2620720 D 323850 CDS YP_001094369.1 127513172 4922880 complement(2621298..2623976) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2335 TonB-dependent receptor; TonB-dependent receptor 2623976 4922880 Shew_2244 Shewanella loihica PV-4 TonB-dependent receptor YP_001094369.1 2621298 R 323850 CDS YP_001094370.1 127513173 4922881 complement(2624567..2625481) 1 NC_009092.1 KEGG: son:SO2936 hypothetical protein; hypothetical protein 2625481 4922881 Shew_2245 Shewanella loihica PV-4 hypothetical protein YP_001094370.1 2624567 R 323850 CDS YP_001094371.1 127513174 4922882 complement(2625784..2626665) 1 NC_009092.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_1533 pseudouridine synthase, Rsu; pseudouridine synthase 2626665 4922882 Shew_2246 Shewanella loihica PV-4 pseudouridine synthase YP_001094371.1 2625784 R 323850 CDS YP_001094372.1 127513175 4922883 complement(2626643..2627275) 1 NC_009092.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shm:Shewmr7_1532 putative transcriptional regulator; putative transcriptional regulator 2627275 4922883 Shew_2247 Shewanella loihica PV-4 putative transcriptional regulator YP_001094372.1 2626643 R 323850 CDS YP_001094373.1 127513176 4922884 complement(2627276..2628064) 1 NC_009092.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: she:Shewmr4_1465 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 2628064 4922884 Shew_2248 Shewanella loihica PV-4 chromosome segregation and condensation protein ScpA YP_001094373.1 2627276 R 323850 CDS YP_001094374.1 127513177 4922802 complement(2628228..2628848) 1 NC_009092.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: shm:Shewmr7_1530 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 2628848 4922802 Shew_2249 Shewanella loihica PV-4 Sua5/YciO/YrdC/YwlC family protein YP_001094374.1 2628228 R 323850 CDS YP_001094375.1 127513178 4922803 complement(2628845..2629705) 1 NC_009092.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sdn:Sden_2449 PHP-like protein; phosphotransferase domain-containing protein 2629705 4922803 Shew_2250 Shewanella loihica PV-4 phosphotransferase domain-containing protein YP_001094375.1 2628845 R 323850 CDS YP_001094376.1 127513179 4922804 2630153..2631706 1 NC_009092.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2631706 4922804 Shew_2251 Shewanella loihica PV-4 anthranilate synthase component I YP_001094376.1 2630153 D 323850 CDS YP_001094377.1 127513180 4922805 2631703..2632311 1 NC_009092.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2632311 4922805 Shew_2252 Shewanella loihica PV-4 anthranilate synthase component II YP_001094377.1 2631703 D 323850 CDS YP_001094378.1 127513181 4922806 2632314..2633363 1 NC_009092.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2633363 trpD 4922806 trpD Shewanella loihica PV-4 anthranilate phosphoribosyltransferase YP_001094378.1 2632314 D 323850 CDS YP_001094379.1 127513182 4922807 2633363..2634814 1 NC_009092.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2634814 4922807 Shew_2254 Shewanella loihica PV-4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_001094379.1 2633363 D 323850 CDS YP_001094380.1 127513183 4922808 2634863..2636074 1 NC_009092.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2636074 4922808 Shew_2255 Shewanella loihica PV-4 tryptophan synthase subunit beta YP_001094380.1 2634863 D 323850 CDS YP_001094381.1 127513184 4922809 2636067..2636870 1 NC_009092.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2636870 trpA 4922809 trpA Shewanella loihica PV-4 tryptophan synthase subunit alpha YP_001094381.1 2636067 D 323850 CDS YP_001094382.1 127513185 4922810 2637166..2637789 1 NC_009092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdn:Sden_0759 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 2637789 4922810 Shew_2257 Shewanella loihica PV-4 HAD family hydrolase YP_001094382.1 2637166 D 323850 CDS YP_001094383.1 127513186 4922811 2637883..2638413 1 NC_009092.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: sfr:Sfri_3246 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 2638413 4922811 Shew_2258 Shewanella loihica PV-4 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 YP_001094383.1 2637883 D 323850 CDS YP_001094384.1 127513187 4922812 complement(2638573..2639775) 1 NC_009092.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sfr:Sfri_1823 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2639775 4922812 Shew_2259 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001094384.1 2638573 R 323850 CDS YP_001094385.1 127513188 4922813 2640162..2640707 1 NC_009092.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2640707 4922813 Shew_2260 Shewanella loihica PV-4 intracellular septation protein A YP_001094385.1 2640162 D 323850 CDS YP_001094386.1 127513189 4922814 2640707..2641006 1 NC_009092.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2641006 4922814 Shew_2261 Shewanella loihica PV-4 YciI-like protein YP_001094386.1 2640707 D 323850 CDS YP_001094387.1 127513190 4922815 2641030..2641839 1 NC_009092.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2641839 4922815 Shew_2262 Shewanella loihica PV-4 exonuclease III YP_001094387.1 2641030 D 323850 CDS YP_001094388.1 127513191 4922618 complement(2641915..2643363) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_1507 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2643363 4922618 Shew_2263 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001094388.1 2641915 R 323850 CDS YP_001094389.1 127513192 4922619 complement(2643435..2643929) 1 NC_009092.1 PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein; hypothetical protein 2643929 4922619 Shew_2264 Shewanella loihica PV-4 hypothetical protein YP_001094389.1 2643435 R 323850 CDS YP_001094390.1 127513193 4922620 complement(2644164..2646407) 1 NC_009092.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: shm:Shewmr7_1505 twin-arginine translocation pathway signal; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2646407 4922620 Shew_2265 Shewanella loihica PV-4 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001094390.1 2644164 R 323850 CDS YP_001094391.1 127513194 4922621 complement(2646404..2646910) 1 NC_009092.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_1414 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2646910 4922621 Shew_2266 Shewanella loihica PV-4 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001094391.1 2646404 R 323850 CDS YP_001094392.1 127513195 4922622 complement(2646990..2647736) 1 NC_009092.1 KEGG: sdn:Sden_2225 hypothetical protein; hypothetical protein 2647736 4922622 Shew_2267 Shewanella loihica PV-4 hypothetical protein YP_001094392.1 2646990 R 323850 CDS YP_001094393.1 127513196 4922623 complement(2647733..2648830) 1 NC_009092.1 PFAM: protein of unknown function DUF182; KEGG: sdn:Sden_2226 protein of unknown function DUF182; hypothetical protein 2648830 4922623 Shew_2268 Shewanella loihica PV-4 hypothetical protein YP_001094393.1 2647733 R 323850 CDS YP_001094394.1 127513197 4922624 complement(2649007..2649651) 1 NC_009092.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2649651 4922624 Shew_2269 Shewanella loihica PV-4 beta-lactamase domain-containing protein YP_001094394.1 2649007 R 323850 CDS YP_001094395.1 127513198 4922625 2649838..2651127 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase; alpha/beta hydrolase 2651127 4922625 Shew_2270 Shewanella loihica PV-4 alpha/beta hydrolase YP_001094395.1 2649838 D 323850 CDS YP_001094396.1 127513199 4922626 2652156..2653775 1 NC_009092.1 KEGG: she:Shewmr4_2330 hypothetical protein; hypothetical protein 2653775 4922626 Shew_2271 Shewanella loihica PV-4 hypothetical protein YP_001094396.1 2652156 D 323850 CDS YP_001094397.1 127513200 4922627 2653796..2654341 1 NC_009092.1 hypothetical protein 2654341 4922627 Shew_2272 Shewanella loihica PV-4 hypothetical protein YP_001094397.1 2653796 D 323850 CDS YP_001094398.1 127513201 4922628 complement(2654978..2655991) 1 NC_009092.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2655991 4922628 Shew_2273 Shewanella loihica PV-4 transposase IS116/IS110/IS902 family protein YP_001094398.1 2654978 R 323850 CDS YP_001094399.1 127513202 4922629 2656418..2658226 1 NC_009092.1 SMART: AAA ATPase; KEGG: cte:CT0993 hypothetical protein; ATPase AAA 2658226 4922629 Shew_2274 Shewanella loihica PV-4 ATPase AAA YP_001094399.1 2656418 D 323850 CDS YP_001094400.1 127513203 4922630 complement(2658261..2659058) 1 NC_009092.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: sfr:Sfri_1824 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 2659058 4922630 Shew_2275 Shewanella loihica PV-4 extradiol ring-cleavage dioxygenase III subunit B YP_001094400.1 2658261 R 323850 CDS YP_001094401.1 127513204 4922631 complement(2659181..2660155) 1 NC_009092.1 KEGG: nwi:Nwi_2675 glutathione S-transferase; glutathione S-transferase 2660155 4922631 Shew_2276 Shewanella loihica PV-4 glutathione S-transferase YP_001094401.1 2659181 R 323850 CDS YP_001094402.1 127513205 4922632 complement(2660234..2660674) 1 NC_009092.1 PFAM: DoxX family protein; KEGG: son:SO3319 hypothetical protein; DoxX family protein 2660674 4922632 Shew_2277 Shewanella loihica PV-4 DoxX family protein YP_001094402.1 2660234 R 323850 CDS YP_001094403.1 127513206 4922300 complement(2660936..2661850) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: par:Psyc_1132 probable transcriptional regulator, LysR family; LysR family transcriptional regulator 2661850 4922300 Shew_2278 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094403.1 2660936 R 323850 CDS YP_001094404.1 127513207 4922301 complement(2662064..2662444) 1 NC_009092.1 KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c 2662444 4922301 Shew_2279 Shewanella loihica PV-4 tetraheme cytochrome c YP_001094404.1 2662064 R 323850 CDS YP_001094405.1 127513208 4922302 complement(2662512..2664170) 1 NC_009092.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase 2664170 4922302 Shew_2280 Shewanella loihica PV-4 phenylalanine/histidine ammonia-lyase YP_001094405.1 2662512 R 323850 CDS YP_001094406.1 127513209 4922303 complement(2664207..2665766) 1 NC_009092.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c 2665766 4922303 Shew_2281 Shewanella loihica PV-4 flavocytochrome c YP_001094406.1 2664207 R 323850 CDS YP_001094407.1 127513210 4922304 2665963..2667486 1 NC_009092.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative; Fis family transcriptional regulator 2667486 4922304 Shew_2282 Shewanella loihica PV-4 Fis family transcriptional regulator YP_001094407.1 2665963 D 323850 CDS YP_001094408.1 127513211 4922305 complement(2667624..2668781) 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative; porin 2668781 4922305 Shew_2283 Shewanella loihica PV-4 porin YP_001094408.1 2667624 R 323850 CDS YP_001094409.1 127513212 4922306 2669070..2669291 1 NC_009092.1 KEGG: ppr:PBPRA1377 hypothetical protein; hypothetical protein 2669291 4922306 Shew_2284 Shewanella loihica PV-4 hypothetical protein YP_001094409.1 2669070 D 323850 CDS YP_001094410.1 127513213 4922307 complement(2669323..2670378) 1 NC_009092.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: vpa:VPA0879 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 2670378 4922307 Shew_2285 Shewanella loihica PV-4 UDP-glucose 4-epimerase YP_001094410.1 2669323 R 323850 CDS YP_001094411.1 127513214 4922308 complement(2670362..2671921) 1 NC_009092.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; SSS family solute/sodium (Na+) symporter 2671921 4922308 Shew_2286 Shewanella loihica PV-4 SSS family solute/sodium (Na+) symporter YP_001094411.1 2670362 R 323850 CDS YP_001094412.1 127513215 4922309 complement(2672008..2673189) 1 NC_009092.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: pha:PSHAa1769 galactokinase; galactokinase 2673189 4922309 Shew_2287 Shewanella loihica PV-4 galactokinase YP_001094412.1 2672008 R 323850 CDS YP_001094413.1 127513216 4922310 complement(2673231..2674322) 1 NC_009092.1 KEGG: pha:PSHAa1770 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase 2674322 4922310 Shew_2288 Shewanella loihica PV-4 galactose-1-phosphate uridylyltransferase YP_001094413.1 2673231 R 323850 CDS YP_001094414.1 127513217 4922311 2674801..2678010 1 NC_009092.1 PFAM: Glycosyl hydrolase family 98, putative carbohydrate binding module; KEGG: dge:Dgeo_2665 glycosyl hydrolase family 98, putative carbohydrate binding module; glycosyl hydrolase family protein 2678010 4922311 Shew_2289 Shewanella loihica PV-4 glycosyl hydrolase family protein YP_001094414.1 2674801 D 323850 CDS YP_001094415.1 127513218 4922312 complement(2678109..2678579) 1 NC_009092.1 PFAM: protein of unknown function DUF606; KEGG: cvi:CV3484 hypothetical protein; hypothetical protein 2678579 4922312 Shew_2290 Shewanella loihica PV-4 hypothetical protein YP_001094415.1 2678109 R 323850 CDS YP_001094416.1 127513219 4922313 complement(2678579..2679115) 1 NC_009092.1 PFAM: protein of unknown function DUF606; KEGG: son:SO0370 hypothetical protein; hypothetical protein 2679115 4922313 Shew_2291 Shewanella loihica PV-4 hypothetical protein YP_001094416.1 2678579 R 323850 CDS YP_001094417.1 127513220 4922285 2679244..2680143 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0340 transcriptional regulator, LysR family; LysR family transcriptional regulator 2680143 4922285 Shew_2292 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094417.1 2679244 D 323850 CDS YP_001094418.1 127513221 4922286 complement(2680226..2681839) 1 NC_009092.1 PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase; tryptophan halogenase 2681839 4922286 Shew_2293 Shewanella loihica PV-4 tryptophan halogenase YP_001094418.1 2680226 R 323850 CDS YP_001094419.1 127513222 4922287 complement(2681952..2684159) 1 NC_009092.1 hypothetical protein 2684159 4922287 Shew_2294 Shewanella loihica PV-4 hypothetical protein YP_001094419.1 2681952 R 323850 CDS YP_001094420.1 127513223 4922288 complement(2684469..2685344) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: msu:MS1229 AraC protein; AraC family transcriptional regulator 2685344 4922288 Shew_2295 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001094420.1 2684469 R 323850 CDS YP_001094421.1 127513224 4922289 2685678..2688482 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2604 TonB-dependent receptor; TonB-dependent receptor 2688482 4922289 Shew_2296 Shewanella loihica PV-4 TonB-dependent receptor YP_001094421.1 2685678 D 323850 CDS YP_001094422.1 127513225 4922290 2688763..2690337 1 NC_009092.1 PFAM: PEGA domain protein; PEGA domain-containing protein 2690337 4922290 Shew_2297 Shewanella loihica PV-4 PEGA domain-containing protein YP_001094422.1 2688763 D 323850 CDS YP_001094423.1 127513226 4922291 2690488..2692431 1 NC_009092.1 KEGG: sde:Sde_2360 putative alpha-glucosidase; putative alpha-glucosidase 2692431 4922291 Shew_2298 Shewanella loihica PV-4 putative alpha-glucosidase YP_001094423.1 2690488 D 323850 CDS YP_001094424.1 127513227 4922292 complement(2692559..2694571) 1 NC_009092.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2694571 4922292 Shew_2299 Shewanella loihica PV-4 DNA topoisomerase III YP_001094424.1 2692559 R 323850 CDS YP_001094425.1 127513228 4922293 2694723..2694998 1 NC_009092.1 hypothetical protein 2694998 4922293 Shew_2300 Shewanella loihica PV-4 hypothetical protein YP_001094425.1 2694723 D 323850 CDS YP_001094426.1 127513229 4922294 complement(2695151..2697268) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2991 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2697268 4922294 Shew_2301 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001094426.1 2695151 R 323850 CDS YP_001094427.1 127513230 4922295 complement(2697457..2698971) 1 NC_009092.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2698971 4922295 Shew_2302 Shewanella loihica PV-4 amidophosphoribosyltransferase YP_001094427.1 2697457 R 323850 CDS YP_001094428.1 127513231 4922296 complement(2699059..2699547) 1 NC_009092.1 PFAM: Colicin V production protein; KEGG: shm:Shewmr7_1494 colicin V production protein; colicin V production protein 2699547 4922296 Shew_2303 Shewanella loihica PV-4 colicin V production protein YP_001094428.1 2699059 R 323850 CDS YP_001094429.1 127513232 4922297 complement(2699766..2700431) 1 NC_009092.1 PFAM: Sporulation domain protein; KEGG: shm:Shewmr7_1493 sporulation domain protein; sporulation domain-containing protein 2700431 4922297 Shew_2304 Shewanella loihica PV-4 sporulation domain-containing protein YP_001094429.1 2699766 R 323850 CDS YP_001094430.1 127513233 4922298 complement(2700432..2701724) 1 NC_009092.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sfr:Sfri_1396 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2701724 4922298 Shew_2305 Shewanella loihica PV-4 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_001094430.1 2700432 R 323850 CDS YP_001094431.1 127513234 4922299 complement(2701789..2702574) 1 NC_009092.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2702574 truA 4922299 truA Shewanella loihica PV-4 tRNA pseudouridine synthase A YP_001094431.1 2701789 R 323850 CDS YP_001094432.1 127513235 4922157 complement(2702822..2705509) 1 NC_009092.1 KEGG: she:Shewmr4_1425 hypothetical protein; hypothetical protein 2705509 4922157 Shew_2307 Shewanella loihica PV-4 hypothetical protein YP_001094432.1 2702822 R 323850 CDS YP_001094433.1 127513236 4922158 complement(2705710..2706726) 1 NC_009092.1 KEGG: shm:Shewmr7_1489 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase 2706726 4922158 Shew_2308 Shewanella loihica PV-4 aspartate-semialdehyde dehydrogenase YP_001094433.1 2705710 R 323850 CDS YP_001094434.1 127513237 4922159 complement(2706729..2707859) 1 NC_009092.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: she:Shewmr4_1423 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase 2707859 4922159 Shew_2309 Shewanella loihica PV-4 D-isomer specific 2-hydroxyacid dehydrogenase YP_001094434.1 2706729 R 323850 CDS YP_001094435.1 127513238 4922160 complement(2708004..2708435) 1 NC_009092.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2708435 ndk 4922160 ndk Shewanella loihica PV-4 nucleoside diphosphate kinase YP_001094435.1 2708004 R 323850 CDS YP_001094436.1 127513239 4922161 complement(2708637..2708828) 1 NC_009092.1 PFAM: protein of unknown function DUF528; KEGG: shm:Shewmr7_1826 protein of unknown function DUF528; hypothetical protein 2708828 4922161 Shew_2311 Shewanella loihica PV-4 hypothetical protein YP_001094436.1 2708637 R 323850 CDS YP_001094437.1 127513240 4922162 complement(2708947..2709282) 1 NC_009092.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: shm:Shewmr7_1824 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 2709282 4922162 Shew_2312 Shewanella loihica PV-4 ferredoxin, 2Fe-2S type, ISC system YP_001094437.1 2708947 R 323850 CDS YP_001094438.1 127513241 4922163 complement(2709291..2711153) 1 NC_009092.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2711153 hscA 4922163 hscA Shewanella loihica PV-4 chaperone protein HscA YP_001094438.1 2709291 R 323850 CDS YP_001094439.1 127513242 4922164 complement(2711226..2711747) 1 NC_009092.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2711747 hscB 4922164 hscB Shewanella loihica PV-4 co-chaperone HscB YP_001094439.1 2711226 R 323850 CDS YP_001094440.1 127513243 4922165 complement(2711763..2712086) 1 NC_009092.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: shm:Shewmr7_1821 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2712086 4922165 Shew_2315 Shewanella loihica PV-4 iron-sulfur cluster assembly protein IscA YP_001094440.1 2711763 R 323850 CDS YP_001094441.1 127513244 4922166 complement(2712101..2712484) 1 NC_009092.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: shm:Shewmr7_1820 FeS cluster assembly scaffold IscU; scaffold protein 2712484 4922166 Shew_2316 Shewanella loihica PV-4 scaffold protein YP_001094441.1 2712101 R 323850 CDS YP_001094442.1 127513245 4922167 complement(2712521..2713735) 1 NC_009092.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2713735 4922167 Shew_2317 Shewanella loihica PV-4 cysteine desulfurase YP_001094442.1 2712521 R 323850 CDS YP_001094443.1 127513246 4922168 complement(2713813..2714274) 1 NC_009092.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: shm:Shewmr7_1818 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2714274 4922168 Shew_2318 Shewanella loihica PV-4 BadM/Rrf2 family transcriptional regulator YP_001094443.1 2713813 R 323850 CDS YP_001094444.1 127513247 4922169 complement(2714471..2715292) 1 NC_009092.1 TIGRFAM: serine O-acetyltransferase; KEGG: she:Shewmr4_1737 serine O-acetyltransferase; serine O-acetyltransferase 2715292 4922169 Shew_2319 Shewanella loihica PV-4 serine O-acetyltransferase YP_001094444.1 2714471 R 323850 CDS YP_001094445.1 127513248 4922170 complement(2715297..2716055) 1 NC_009092.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_1816 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 2716055 4922170 Shew_2320 Shewanella loihica PV-4 RNA methyltransferase YP_001094445.1 2715297 R 323850 CDS YP_001094446.1 127513249 4922101 2716213..2717016 1 NC_009092.1 PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_1815 inositol-phosphate phosphatase; inositol monophosphatase 2717016 4922101 Shew_2321 Shewanella loihica PV-4 inositol monophosphatase YP_001094446.1 2716213 D 323850 CDS YP_001094447.1 127513250 4922102 2717361..2718533 1 NC_009092.1 PFAM: NnrS family protein; KEGG: shm:Shewmr7_2495 NnrS family protein; NnrS family protein 2718533 4922102 Shew_2322 Shewanella loihica PV-4 NnrS family protein YP_001094447.1 2717361 D 323850 CDS YP_001094448.1 127513251 4922103 2718642..2719046 1 NC_009092.1 PFAM: phosphate-starvation-inducible E; KEGG: shm:Shewmr7_2496 phosphate-starvation-inducible E; phosphate-starvation-inducible E 2719046 4922103 Shew_2323 Shewanella loihica PV-4 phosphate-starvation-inducible E YP_001094448.1 2718642 D 323850 CDS YP_001094449.1 127513252 4922104 2719363..2719665 1 NC_009092.1 PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_2497 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2719665 4922104 Shew_2324 Shewanella loihica PV-4 type IV pilus assembly PilZ YP_001094449.1 2719363 D 323850 CDS YP_001094450.1 127513253 4922105 2719779..2720447 1 NC_009092.1 KEGG: sdn:Sden_1451 hypothetical protein; hypothetical protein 2720447 4922105 Shew_2325 Shewanella loihica PV-4 hypothetical protein YP_001094450.1 2719779 D 323850 CDS YP_001094451.1 127513254 4922106 2720434..2720778 1 NC_009092.1 KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein 2720778 4922106 Shew_2326 Shewanella loihica PV-4 RepA domain-containing protein YP_001094451.1 2720434 D 323850 CDS YP_001094452.1 127513255 4922107 complement(2720811..2721014) 1 NC_009092.1 KEGG: sfr:Sfri_1783 hypothetical protein; hypothetical protein 2721014 4922107 Shew_2327 Shewanella loihica PV-4 hypothetical protein YP_001094452.1 2720811 R 323850 CDS YP_001094453.1 127513256 4922108 2721211..2722908 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: shm:Shewmr7_2501 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS 2722908 4922108 Shew_2328 Shewanella loihica PV-4 signal transduction histidine kinase LytS YP_001094453.1 2721211 D 323850 CDS YP_001094454.1 127513257 4922109 2722905..2723615 1 NC_009092.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2723615 4922109 Shew_2329 Shewanella loihica PV-4 putative two-component response-regulatory protein YehT YP_001094454.1 2722905 D 323850 CDS YP_001094455.1 127513258 4922110 2723735..2725171 1 NC_009092.1 PFAM: carbon starvation protein CstA; KEGG: shm:Shewmr7_2503 carbon starvation protein CstA; carbon starvation protein CstA 2725171 4922110 Shew_2330 Shewanella loihica PV-4 carbon starvation protein CstA YP_001094455.1 2723735 D 323850 CDS YP_001094456.1 127513259 4922111 complement(2725285..2725824) 1 NC_009092.1 PFAM: YaeQ family protein; KEGG: shm:Shewmr7_1454 YaeQ family protein; YaeQ family protein 2725824 4922111 Shew_2331 Shewanella loihica PV-4 YaeQ family protein YP_001094456.1 2725285 R 323850 CDS YP_001094457.1 127513260 4922112 complement(2725893..2726804) 1 NC_009092.1 TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase 2726804 4922112 Shew_2332 Shewanella loihica PV-4 siroheme synthase YP_001094457.1 2725893 R 323850 CDS YP_001094458.1 127513261 4922113 complement(2726875..2727192) 1 NC_009092.1 KEGG: shm:Shewmr7_1451 hypothetical protein; hypothetical protein 2727192 4922113 Shew_2333 Shewanella loihica PV-4 hypothetical protein YP_001094458.1 2726875 R 323850 CDS YP_001094459.1 127513262 4922114 complement(2727365..2728312) 1 NC_009092.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2728312 secF 4922114 secF Shewanella loihica PV-4 preprotein translocase subunit SecF YP_001094459.1 2727365 R 323850 CDS YP_001094460.1 127513263 4922115 complement(2728326..2730176) 1 NC_009092.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2730176 secD 4922115 secD Shewanella loihica PV-4 preprotein translocase subunit SecD YP_001094460.1 2728326 R 323850 CDS YP_001094461.1 127513264 4922063 complement(2730216..2730491) 1 NC_009092.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: son:SO3112 preprotein translocase, YajC subunit; preprotein translocase subunit YajC 2730491 4922063 Shew_2336 Shewanella loihica PV-4 preprotein translocase subunit YajC YP_001094461.1 2730216 R 323850 CDS YP_001094462.1 127513265 4922064 complement(2730576..2731700) 1 NC_009092.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2731700 tgt 4922064 tgt Shewanella loihica PV-4 queuine tRNA-ribosyltransferase YP_001094462.1 2730576 R 323850 CDS YP_001094463.1 127513266 4922065 complement(2731869..2732906) 1 NC_009092.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2732906 queA 4922065 queA Shewanella loihica PV-4 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001094463.1 2731869 R 323850 CDS YP_001094464.1 127513267 4922066 2733316..2733909 1 NC_009092.1 PFAM: protein of unknown function DUF479; KEGG: sfr:Sfri_2704 protein of unknown function DUF479; hypothetical protein 2733909 4922066 Shew_2339 Shewanella loihica PV-4 hypothetical protein YP_001094464.1 2733316 D 323850 CDS YP_001094465.1 127513268 4922067 2733979..2734476 1 NC_009092.1 PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_1443 redoxin domain protein; redoxin domain-containing protein 2734476 4922067 Shew_2340 Shewanella loihica PV-4 redoxin domain-containing protein YP_001094465.1 2733979 D 323850 CDS YP_001094466.1 127513269 4922068 complement(2734555..2735907) 1 NC_009092.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_1366 sigma-54 factor, interaction region; two component, sigma54 specific, Fis family transcriptional regulator 2735907 4922068 Shew_2341 Shewanella loihica PV-4 two component, sigma54 specific, Fis family transcriptional regulator YP_001094466.1 2734555 R 323850 CDS YP_001094467.1 127513270 4922069 complement(2735907..2737541) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sdn:Sden_1365 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase 2737541 4922069 Shew_2342 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001094467.1 2735907 R 323850 CDS YP_001094468.1 127513271 4922070 2737879..2738655 1 NC_009092.1 KEGG: sdn:Sden_1364 hypothetical protein; hypothetical protein 2738655 4922070 Shew_2343 Shewanella loihica PV-4 hypothetical protein YP_001094468.1 2737879 D 323850 CDS YP_001094469.1 127513272 4922071 2738752..2739087 1 NC_009092.1 KEGG: sfr:Sfri_2525 hypothetical protein; hypothetical protein 2739087 4922071 Shew_2344 Shewanella loihica PV-4 hypothetical protein YP_001094469.1 2738752 D 323850 CDS YP_001094470.1 127513273 4922072 complement(2739163..2740677) 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdn:Sden_1897 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2740677 4922072 Shew_2345 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001094470.1 2739163 R 323850 CDS YP_001094471.1 127513274 4922073 complement(2740733..2741398) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: cps:CPS_3310 putative phosphonate ABC transporter, ATP-binding protein; ABC transporter-like protein 2741398 4922073 Shew_2346 Shewanella loihica PV-4 ABC transporter-like protein YP_001094471.1 2740733 R 323850 CDS YP_001094472.1 127513275 4922074 complement(2741403..2742257) 1 NC_009092.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sfr:Sfri_2485 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2742257 4922074 Shew_2347 Shewanella loihica PV-4 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001094472.1 2741403 R 323850 CDS YP_001094473.1 127513276 4922075 2742497..2743171 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_1655 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2743171 4922075 Shew_2348 Shewanella loihica PV-4 two component transcriptional regulator YP_001094473.1 2742497 D 323850 CDS YP_001094474.1 127513277 4922076 2743162..2744511 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: she:Shewmr4_1579 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2744511 4922076 Shew_2349 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001094474.1 2743162 D 323850 CDS YP_001094475.1 127513278 4921722 complement(2744508..2745203) 1 NC_009092.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; 2OG-Fe(II) oxygenase 2745203 4921722 Shew_2350 Shewanella loihica PV-4 2OG-Fe(II) oxygenase YP_001094475.1 2744508 R 323850 CDS YP_001094476.1 127513279 4921723 2745324..2746589 1 NC_009092.1 KEGG: shm:Shewmr7_1652 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2746589 4921723 Shew_2351 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001094476.1 2745324 D 323850 CDS YP_001094477.1 127513280 4921724 2746679..2746987 1 NC_009092.1 hypothetical protein 2746987 4921724 Shew_2352 Shewanella loihica PV-4 hypothetical protein YP_001094477.1 2746679 D 323850 CDS YP_001094478.1 127513281 4921725 complement(2747062..2748009) 1 NC_009092.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2748009 4921725 Shew_2353 Shewanella loihica PV-4 magnesium and cobalt transport protein CorA YP_001094478.1 2747062 R 323850 CDS YP_001094479.1 127513282 4921726 complement(2748171..2748539) 1 NC_009092.1 KEGG: sfr:Sfri_3226 hypothetical protein; hypothetical protein 2748539 4921726 Shew_2354 Shewanella loihica PV-4 hypothetical protein YP_001094479.1 2748171 R 323850 CDS YP_001094480.1 127513283 4921727 2748704..2749474 1 NC_009092.1 KEGG: sfr:Sfri_0786 hypothetical protein; hypothetical protein 2749474 4921727 Shew_2355 Shewanella loihica PV-4 hypothetical protein YP_001094480.1 2748704 D 323850 CDS YP_001094481.1 127513284 4921728 complement(2749563..2750600) 1 NC_009092.1 PFAM: Patatin; KEGG: she:Shewmr4_2385 patatin; patatin 2750600 4921728 Shew_2356 Shewanella loihica PV-4 patatin YP_001094481.1 2749563 R 323850 CDS YP_001094482.1 127513285 4920911 complement(2757544..2758098) 1 NC_009092.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2758098 4920911 Shew_2357 Shewanella loihica PV-4 D,D-heptose 1,7-bisphosphate phosphatase YP_001094482.1 2757544 R 323850 CDS YP_001094483.1 127513286 4921730 2758272..2759591 1 NC_009092.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: mca:MCA2770 xaa-pro aminopeptidase; peptidase M24 2759591 4921730 Shew_2358 Shewanella loihica PV-4 peptidase M24 YP_001094483.1 2758272 D 323850 CDS YP_001094484.1 127513287 4921731 complement(2759661..2760251) 1 NC_009092.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: dar:Daro_1297 hypothetical protein; uracil-DNA glycosylase superfamily protein 2760251 4921731 Shew_2359 Shewanella loihica PV-4 uracil-DNA glycosylase superfamily protein YP_001094484.1 2759661 R 323850 CDS YP_001094485.1 127513288 4921732 complement(2760413..2761753) 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: hch:HCH_03166 glycine/D-amino acid oxidases (deaminating); D-amino-acid dehydrogenase 2761753 4921732 Shew_2360 Shewanella loihica PV-4 D-amino-acid dehydrogenase YP_001094485.1 2760413 R 323850 CDS YP_001094486.1 127513289 4921733 complement(2761750..2762790) 1 NC_009092.1 PFAM: proline racemase; KEGG: cps:CPS_1453 putative proline racemase; proline racemase 2762790 4921733 Shew_2361 Shewanella loihica PV-4 proline racemase YP_001094486.1 2761750 R 323850 CDS YP_001094487.1 127513290 4921734 2762994..2763908 1 NC_009092.1 KEGG: cps:CPS_1449 dihydrodipicolinate synthetase family protein; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2763908 4921734 Shew_2362 Shewanella loihica PV-4 dihydrodipicolinate synthase YP_001094487.1 2762994 D 323850 CDS YP_001094488.1 127513291 4921735 2763929..2764930 1 NC_009092.1 PFAM: proline racemase; KEGG: hch:HCH_03167 proline racemase; hydroxyproline-2-epimerase 2764930 4921735 Shew_2363 Shewanella loihica PV-4 hydroxyproline-2-epimerase YP_001094488.1 2763929 D 323850 CDS YP_001094489.1 127513292 4921891 2764957..2766522 1 NC_009092.1 PFAM: aldehyde dehydrogenase; KEGG: csa:Csal_1140 aldehyde dehydrogenase; aldehyde dehydrogenase 2766522 4921891 Shew_2364 Shewanella loihica PV-4 aldehyde dehydrogenase YP_001094489.1 2764957 D 323850 CDS YP_001094490.1 127513293 4921892 2766629..2767300 1 NC_009092.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: she:Shewmr4_1521 transcriptional regulator, GntR family; GntR family transcriptional regulator 2767300 4921892 Shew_2365 Shewanella loihica PV-4 GntR family transcriptional regulator YP_001094490.1 2766629 D 323850 CDS YP_001094491.1 127513294 4921893 2767400..2768467 1 NC_009092.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 2768467 4921893 Shew_2366 Shewanella loihica PV-4 3-oxoacyl-ACP synthase YP_001094491.1 2767400 D 323850 CDS YP_001094492.1 127513295 4921894 complement(2768570..2769160) 1 NC_009092.1 KEGG: shm:Shewmr7_1586 hypothetical protein; hypothetical protein 2769160 4921894 Shew_2367 Shewanella loihica PV-4 hypothetical protein YP_001094492.1 2768570 R 323850 CDS YP_001094493.1 127513296 4921895 complement(2769299..2769979) 1 NC_009092.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease 2769979 4921895 Shew_2368 Shewanella loihica PV-4 exonuclease YP_001094493.1 2769299 R 323850 CDS YP_001094494.1 127513297 4921896 complement(2769980..2771827) 1 NC_009092.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein; cyclic nucleotide-binding protein 2771827 4921896 Shew_2369 Shewanella loihica PV-4 cyclic nucleotide-binding protein YP_001094494.1 2769980 R 323850 CDS YP_001094495.1 127513298 4921897 complement(2771948..2772607) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_1373 methyltransferase type 12; type 11 methyltransferase 2772607 4921897 Shew_2370 Shewanella loihica PV-4 type 11 methyltransferase YP_001094495.1 2771948 R 323850 CDS YP_001094496.1 127513299 4921898 complement(2772719..2774437) 1 NC_009092.1 PFAM: Na+/solute symporter; KEGG: sfr:Sfri_1547 Na+/solute symporter; Na+/solute symporter 2774437 4921898 Shew_2371 Shewanella loihica PV-4 Na+/solute symporter YP_001094496.1 2772719 R 323850 CDS YP_001094497.1 127513300 4921899 complement(2774449..2774715) 1 NC_009092.1 KEGG: shm:Shewmr7_1580 hypothetical protein; hypothetical protein 2774715 4921899 Shew_2372 Shewanella loihica PV-4 hypothetical protein YP_001094497.1 2774449 R 323850 CDS YP_001094498.1 127513301 4921900 complement(2775015..2775647) 1 NC_009092.1 PFAM: DSBA oxidoreductase; KEGG: she:Shewmr4_1512 DsbA oxidoreductase; DSBA oxidoreductase 2775647 4921900 Shew_2373 Shewanella loihica PV-4 DSBA oxidoreductase YP_001094498.1 2775015 R 323850 CDS YP_001094499.1 127513302 4921901 complement(2775885..2776784) 1 NC_009092.1 KEGG: sfr:Sfri_2458 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2776784 4921901 Shew_2374 Shewanella loihica PV-4 NAD-dependent epimerase/dehydratase YP_001094499.1 2775885 R 323850 CDS YP_001094500.1 127513303 4921902 complement(2776848..2778071) 1 NC_009092.1 KEGG: she:Shewmr4_1510 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2778071 4921902 Shew_2375 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001094500.1 2776848 R 323850 CDS YP_001094501.1 127513304 4921903 complement(2778555..2779025) 1 NC_009092.1 KEGG: son:SO2863 hypothetical protein; hypothetical protein 2779025 4921903 Shew_2376 Shewanella loihica PV-4 hypothetical protein YP_001094501.1 2778555 R 323850 CDS YP_001094502.1 127513305 4921904 complement(2779187..2781196) 1 NC_009092.1 KEGG: shm:Shewmr7_1575 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; NAD-dependent DNA ligase 2781196 4921904 Shew_2377 Shewanella loihica PV-4 NAD-dependent DNA ligase YP_001094502.1 2779187 R 323850 CDS YP_001094503.1 127513306 4921905 complement(2781264..2782271) 1 NC_009092.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA 2782271 4921905 Shew_2378 Shewanella loihica PV-4 cell division protein ZipA YP_001094503.1 2781264 R 323850 CDS YP_001094504.1 127513307 4921443 complement(2782295..2785720) 1 NC_009092.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC 2785720 4921443 Shew_2379 Shewanella loihica PV-4 chromosome segregation protein SMC YP_001094504.1 2782295 R 323850 CDS YP_001094505.1 127513308 4921444 2785909..2786682 1 NC_009092.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 2786682 4921444 Shew_2380 Shewanella loihica PV-4 putative sulfate transport protein CysZ YP_001094505.1 2785909 D 323850 CDS YP_001094506.1 127513309 4921445 complement(2786733..2787977) 1 NC_009092.1 PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein; RDD domain-containing protein 2787977 4921445 Shew_2381 Shewanella loihica PV-4 RDD domain-containing protein YP_001094506.1 2786733 R 323850 CDS YP_001094507.1 127513310 4921446 2788241..2789209 1 NC_009092.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: she:Shewmr4_1500 cysteine synthase A; cysteine synthase A 2789209 4921446 Shew_2382 Shewanella loihica PV-4 cysteine synthase A YP_001094507.1 2788241 D 323850 CDS YP_001094508.1 127513311 4921447 complement(2789272..2789928) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: psp:PSPPH_3872 transcriptional regulator, TetR family; TetR family transcriptional regulator 2789928 4921447 Shew_2383 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001094508.1 2789272 R 323850 CDS YP_001094509.1 127513312 4921448 2790184..2791251 1 NC_009092.1 PFAM: O-methyltransferase, family 2; KEGG: sfr:Sfri_2128 O-methyltransferase, putative; O-methyltransferase family protein 2791251 4921448 Shew_2384 Shewanella loihica PV-4 O-methyltransferase family protein YP_001094509.1 2790184 D 323850 CDS YP_001094510.1 127513313 4921449 2792231..2794918 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2119 TonB-dependent receptor; TonB-dependent receptor, plug 2794918 4921449 Shew_2385 Shewanella loihica PV-4 TonB-dependent receptor, plug YP_001094510.1 2792231 D 323850 CDS YP_001094511.1 127513314 4921450 complement(2794991..2796520) 1 NC_009092.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shm:Shewmr7_1563 C4-dicarboxylate anaerobic carrier; hypothetical protein 2796520 4921450 Shew_2386 Shewanella loihica PV-4 hypothetical protein YP_001094511.1 2794991 R 323850 CDS YP_001094512.1 127513315 4921451 2796863..2797777 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2469 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 2797777 4921451 Shew_2387 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094512.1 2796863 D 323850 CDS YP_001094513.1 127513316 4921452 complement(2797912..2799438) 1 NC_009092.1 PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: sfr:Sfri_2470 formate/nitrite transporter; formate/nitrite transporter 2799438 4921452 Shew_2388 Shewanella loihica PV-4 formate/nitrite transporter YP_001094513.1 2797912 R 323850 CDS YP_001094514.1 127513317 4921453 2800399..2801931 1 NC_009092.1 KEGG: sfr:Sfri_2472 hypothetical protein; hypothetical protein 2801931 4921453 Shew_2389 Shewanella loihica PV-4 hypothetical protein YP_001094514.1 2800399 D 323850 CDS YP_001094515.1 127513318 4921454 2802496..2804778 1 NC_009092.1 KEGG: shm:Shewmr7_1561 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 2804778 4921454 Shew_2390 Shewanella loihica PV-4 formate acetyltransferase YP_001094515.1 2802496 D 323850 CDS YP_001094516.1 127513319 4921455 2804882..2805622 1 NC_009092.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2805622 pflA 4921455 pflA Shewanella loihica PV-4 pyruvate formate lyase-activating enzyme 1 YP_001094516.1 2804882 D 323850 CDS YP_001094517.1 127513320 4921456 complement(2805629..2806072) 1 NC_009092.1 PFAM: protein of unknown function DUF412; KEGG: shm:Shewmr7_1559 protein of unknown function DUF412; hypothetical protein 2806072 4921456 Shew_2392 Shewanella loihica PV-4 hypothetical protein YP_001094517.1 2805629 R 323850 CDS YP_001094518.1 127513321 4921783 2806268..2807464 1 NC_009092.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2807464 4921783 Shew_2393 Shewanella loihica PV-4 acetate kinase YP_001094518.1 2806268 D 323850 CDS YP_001094519.1 127513322 4921784 2807561..2809699 1 NC_009092.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2809699 4921784 Shew_2394 Shewanella loihica PV-4 phosphate acetyltransferase YP_001094519.1 2807561 D 323850 CDS YP_001094520.1 127513323 4921785 2810027..2810458 1 NC_009092.1 KEGG: son:SO2917 hypothetical protein; hypothetical protein 2810458 4921785 Shew_2395 Shewanella loihica PV-4 hypothetical protein YP_001094520.1 2810027 D 323850 CDS YP_001094521.1 127513324 4921786 2811189..2811413 1 NC_009092.1 KEGG: shm:Shewmr7_1552 hypothetical protein; hypothetical protein 2811413 4921786 Shew_2396 Shewanella loihica PV-4 hypothetical protein YP_001094521.1 2811189 D 323850 CDS YP_001094522.1 127513325 4921787 complement(2811517..2812434) 1 NC_009092.1 KEGG: sfr:Sfri_2556 hypothetical protein; hypothetical protein 2812434 4921787 Shew_2397 Shewanella loihica PV-4 hypothetical protein YP_001094522.1 2811517 R 323850 CDS YP_001094523.1 127513326 4921788 complement(2812498..2813667) 1 NC_009092.1 PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_1550 protein of unknown function UPF0118; hypothetical protein 2813667 4921788 Shew_2398 Shewanella loihica PV-4 hypothetical protein YP_001094523.1 2812498 R 323850 CDS YP_001094524.1 127513327 4921789 2813743..2814108 1 NC_009092.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2814108 folX 4921789 folX Shewanella loihica PV-4 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_001094524.1 2813743 D 323850 CDS YP_001094525.1 127513328 4921790 2814205..2815134 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: she:Shewmr4_1483 hypothetical protein; hypothetical protein 2815134 4921790 Shew_2400 Shewanella loihica PV-4 hypothetical protein YP_001094525.1 2814205 D 323850 CDS YP_001094526.1 127513329 4921791 complement(2815269..2817719) 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_1545 protein of unknown function DUF214; hypothetical protein 2817719 4921791 Shew_2401 Shewanella loihica PV-4 hypothetical protein YP_001094526.1 2815269 R 323850 CDS YP_001094527.1 127513330 4921792 complement(2817719..2818459) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sdn:Sden_2367 ABC transporter-related protein; ABC transporter-like protein 2818459 4921792 Shew_2402 Shewanella loihica PV-4 ABC transporter-like protein YP_001094527.1 2817719 R 323850 CDS YP_001094528.1 127513331 4921793 2818494..2819087 1 NC_009092.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: she:Shewmr4_1478 arylesterase; arylesterase 2819087 4921793 Shew_2403 Shewanella loihica PV-4 arylesterase YP_001094528.1 2818494 D 323850 CDS YP_001094529.1 127513332 4921794 2819657..2822308 1 NC_009092.1 KEGG: shm:Shewmr7_1539 hypothetical protein; hypothetical protein 2822308 4921794 Shew_2404 Shewanella loihica PV-4 hypothetical protein YP_001094529.1 2819657 D 323850 CDS YP_001094530.1 127513333 4921795 2822361..2823596 1 NC_009092.1 KEGG: son:SO2931 hypothetical protein; hypothetical protein 2823596 4921795 Shew_2405 Shewanella loihica PV-4 hypothetical protein YP_001094530.1 2822361 D 323850 CDS YP_001094531.1 127513334 4921796 complement(2823593..2824606) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: she:Shewmr4_1471 transcriptional regulator, AraC family; AraC family transcriptional regulator 2824606 4921796 Shew_2406 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001094531.1 2823593 R 323850 CDS YP_001094532.1 127513335 4921797 complement(2824745..2825776) 1 NC_009092.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2825776 4921797 Shew_2407 Shewanella loihica PV-4 putative periplasmic protease YP_001094532.1 2824745 R 323850 CDS YP_001094533.1 127513336 4921738 complement(2825905..2828391) 1 NC_009092.1 KEGG: she:Shewmr4_1469 hypothetical protein; hypothetical protein 2828391 4921738 Shew_2408 Shewanella loihica PV-4 hypothetical protein YP_001094533.1 2825905 R 323850 CDS YP_001094534.1 127513337 4921739 2828652..2829389 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1534 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2829389 4921739 Shew_2409 Shewanella loihica PV-4 short chain dehydrogenase YP_001094534.1 2828652 D 323850 CDS YP_001094535.1 127513338 4921740 complement(2829576..2830787) 1 NC_009092.1 PFAM: beta-ketoacyl synthase; KEGG: sfr:Sfri_1391 beta-ketoacyl synthase; beta-ketoacyl synthase 2830787 4921740 Shew_2410 Shewanella loihica PV-4 beta-ketoacyl synthase YP_001094535.1 2829576 R 323850 CDS YP_001094536.1 127513339 4921741 2830891..2832951 1 NC_009092.1 PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_1390 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2832951 4921741 Shew_2411 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001094536.1 2830891 D 323850 CDS YP_001094537.1 127513340 4921742 complement(2833034..2833558) 1 NC_009092.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sdn:Sden_1541 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 2833558 4921742 Shew_2412 Shewanella loihica PV-4 tRNA/rRNA methyltransferase SpoU YP_001094537.1 2833034 R 323850 CDS YP_001094538.1 127513341 4921743 complement(2833561..2833842) 1 NC_009092.1 KEGG: sdn:Sden_1540 hypothetical protein; hypothetical protein 2833842 4921743 Shew_2413 Shewanella loihica PV-4 hypothetical protein YP_001094538.1 2833561 R 323850 CDS YP_001094539.1 127513342 4921744 complement(2833865..2835031) 1 NC_009092.1 PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase 2835031 4921744 Shew_2414 Shewanella loihica PV-4 ATP-NAD/AcoX kinase YP_001094539.1 2833865 R 323850 CDS YP_001094540.1 127513343 4921745 complement(2835052..2836260) 1 NC_009092.1 PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative; major facilitator superfamily transporter 2836260 4921745 Shew_2415 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001094540.1 2835052 R 323850 CDS YP_001094541.1 127513344 4921746 complement(2836447..2837541) 1 NC_009092.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2837541 4921746 Shew_2416 Shewanella loihica PV-4 chorismate synthase YP_001094541.1 2836447 R 323850 CDS YP_001094542.1 127513345 4921747 complement(2837673..2838617) 1 NC_009092.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2838617 4921747 Shew_2417 Shewanella loihica PV-4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001094542.1 2837673 R 323850 CDS YP_001094543.1 127513346 4921748 2838697..2839224 1 NC_009092.1 PFAM: Smr protein/MutS2; KEGG: shm:Shewmr7_1479 Smr protein/MutS2; hypothetical protein 2839224 4921748 Shew_2418 Shewanella loihica PV-4 hypothetical protein YP_001094543.1 2838697 D 323850 CDS YP_001094544.1 127513347 4921749 complement(2839398..2839868) 1 NC_009092.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 2839868 4921749 Shew_2419 Shewanella loihica PV-4 phosphohistidine phosphatase, SixA YP_001094544.1 2839398 R 323850 CDS YP_001094545.1 127513348 4921750 2840092..2842869 1 NC_009092.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family; peptidase M16 domain-containing protein 2842869 4921750 Shew_2420 Shewanella loihica PV-4 peptidase M16 domain-containing protein YP_001094545.1 2840092 D 323850 CDS YP_001094546.1 127513349 4921751 2843433..2847746 1 NC_009092.1 KEGG: shm:Shewmr7_1476 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2847746 4921751 Shew_2421 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001094546.1 2843433 D 323850 CDS YP_001094547.1 127513350 4921643 2847897..2848532 1 NC_009092.1 KEGG: she:Shewmr4_1410 hypothetical protein; hypothetical protein 2848532 4921643 Shew_2422 Shewanella loihica PV-4 hypothetical protein YP_001094547.1 2847897 D 323850 CDS YP_001094548.1 127513351 4921644 2848551..2848670 1 NC_009092.1 KEGG: sfr:Sfri_4067 hypothetical protein; hypothetical protein 2848670 4921644 Shew_2423 Shewanella loihica PV-4 hypothetical protein YP_001094548.1 2848551 D 323850 CDS YP_001094549.1 127513352 4921645 complement(2848964..2849170) 1 NC_009092.1 KEGG: sdn:Sden_1531 hypothetical protein; hypothetical protein 2849170 4921645 Shew_2424 Shewanella loihica PV-4 hypothetical protein YP_001094549.1 2848964 R 323850 CDS YP_001094550.1 127513353 4921646 complement(2849329..2851449) 1 NC_009092.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2851449 fadJ 4921646 fadJ Shewanella loihica PV-4 multifunctional fatty acid oxidation complex subunit alpha YP_001094550.1 2849329 R 323850 CDS YP_001094551.1 127513354 4921647 complement(2851454..2852764) 1 NC_009092.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2852764 fadI 4921647 fadI Shewanella loihica PV-4 3-ketoacyl-CoA thiolase YP_001094551.1 2851454 R 323850 CDS YP_001094552.1 127513355 4921648 2853173..2854129 1 NC_009092.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1471 ATPase associated with various cellular activities, AAA_3; ATPase 2854129 4921648 Shew_2427 Shewanella loihica PV-4 ATPase YP_001094552.1 2853173 D 323850 CDS YP_001094553.1 127513356 4921649 2854129..2855058 1 NC_009092.1 PFAM: protein of unknown function DUF58; KEGG: she:Shewmr4_1405 protein of unknown function DUF58; hypothetical protein 2855058 4921649 Shew_2428 Shewanella loihica PV-4 hypothetical protein YP_001094553.1 2854129 D 323850 CDS YP_001094554.1 127513357 4921650 2855059..2855553 1 NC_009092.1 KEGG: son:SO3092 hypothetical protein; hypothetical protein 2855553 4921650 Shew_2429 Shewanella loihica PV-4 hypothetical protein YP_001094554.1 2855059 D 323850 CDS YP_001094555.1 127513358 4921651 2855541..2856560 1 NC_009092.1 PFAM: von Willebrand factor, type A; KEGG: shm:Shewmr7_1468 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 2856560 4921651 Shew_2430 Shewanella loihica PV-4 von Willebrand factor type A domain-containing protein YP_001094555.1 2855541 D 323850 CDS YP_001094556.1 127513359 4921652 2856557..2858638 1 NC_009092.1 PFAM: TPR repeat-containing protein; von Willebrand factor, type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_1467 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2858638 4921652 Shew_2431 Shewanella loihica PV-4 hypothetical protein YP_001094556.1 2856557 D 323850 CDS YP_001094557.1 127513360 4921653 2858632..2860272 1 NC_009092.1 KEGG: shm:Shewmr7_1466 hypothetical protein; hypothetical protein 2860272 4921653 Shew_2432 Shewanella loihica PV-4 hypothetical protein YP_001094557.1 2858632 D 323850 CDS YP_001094558.1 127513361 4921654 2860357..2860920 1 NC_009092.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2860920 4921654 Shew_2433 Shewanella loihica PV-4 RNA polymerase sigma factor YP_001094558.1 2860357 D 323850 CDS YP_001094559.1 127513362 4921655 2860913..2861617 1 NC_009092.1 KEGG: shm:Shewmr7_1464 hypothetical protein; hypothetical protein 2861617 4921655 Shew_2434 Shewanella loihica PV-4 hypothetical protein YP_001094559.1 2860913 D 323850 CDS YP_001094560.1 127513363 4921656 2862004..2863455 1 NC_009092.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: she:Shewmr4_1398 sodium/proline symporter; sodium/proline symporter 2863455 4921656 Shew_2435 Shewanella loihica PV-4 sodium/proline symporter YP_001094560.1 2862004 D 323850 CDS YP_001094561.1 127513364 4921657 2863837..2865153 1 NC_009092.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: shm:Shewmr7_1462 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 2865153 4921657 Shew_2436 Shewanella loihica PV-4 aromatic hydrocarbon degradation membrane protein YP_001094561.1 2863837 D 323850 CDS YP_001094562.1 127513365 4921593 2865259..2865645 1 NC_009092.1 KEGG: shm:Shewmr7_1461 hypothetical protein; hypothetical protein 2865645 4921593 Shew_2437 Shewanella loihica PV-4 hypothetical protein YP_001094562.1 2865259 D 323850 CDS YP_001094563.1 127513366 4921594 2865720..2866430 1 NC_009092.1 PFAM: protein of unknown function DUF541; KEGG: son:SO3101 hypothetical protein; hypothetical protein 2866430 4921594 Shew_2438 Shewanella loihica PV-4 hypothetical protein YP_001094563.1 2865720 D 323850 CDS YP_001094564.1 127513367 4921595 2866545..2867561 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1394 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2867561 4921595 Shew_2439 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001094564.1 2866545 D 323850 CDS YP_001094565.1 127513368 4921596 2867592..2870846 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1458 acriflavin resistance protein; acriflavin resistance protein 2870846 4921596 Shew_2440 Shewanella loihica PV-4 acriflavin resistance protein YP_001094565.1 2867592 D 323850 CDS YP_001094566.1 127513369 4921597 2870858..2871070 1 NC_009092.1 KEGG: shm:Shewmr7_1457 hypothetical protein; hypothetical protein 2871070 4921597 Shew_2441 Shewanella loihica PV-4 hypothetical protein YP_001094566.1 2870858 D 323850 CDS YP_001094567.1 127513370 4921598 2871094..2871477 1 NC_009092.1 PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein 2871477 4921598 Shew_2442 Shewanella loihica PV-4 rhodanese domain-containing protein YP_001094567.1 2871094 D 323850 CDS YP_001094568.1 127513371 4921599 2872114..2874537 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: sfr:Sfri_2692 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2874537 4921599 Shew_2443 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001094568.1 2872114 D 323850 CDS YP_001094569.1 127513372 4921600 2874607..2874987 1 NC_009092.1 KEGG: shm:Shewmr7_2504 hypothetical protein; hypothetical protein 2874987 4921600 Shew_2444 Shewanella loihica PV-4 hypothetical protein YP_001094569.1 2874607 D 323850 CDS YP_001094570.1 127513373 4921601 2875132..2875608 1 NC_009092.1 KEGG: sdn:Sden_0862 hypothetical protein; hypothetical protein 2875608 4921601 Shew_2445 Shewanella loihica PV-4 hypothetical protein YP_001094570.1 2875132 D 323850 CDS YP_001094571.1 127513374 4921602 complement(2875735..2876352) 1 NC_009092.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 2876352 ribA 4921602 ribA Shewanella loihica PV-4 GTP cyclohydrolase II YP_001094571.1 2875735 R 323850 CDS YP_001094572.1 127513375 4921603 complement(2876587..2876943) 1 NC_009092.1 KEGG: shm:Shewmr7_2509 hypothetical protein; hypothetical protein 2876943 4921603 Shew_2447 Shewanella loihica PV-4 hypothetical protein YP_001094572.1 2876587 R 323850 CDS YP_001094573.1 127513376 4921604 complement(2877102..2877575) 1 NC_009092.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 2877575 nrdG 4921604 nrdG Shewanella loihica PV-4 anaerobic ribonucleotide reductase-activating protein YP_001094573.1 2877102 R 323850 CDS YP_001094574.1 127513377 4921605 complement(2877697..2879814) 1 NC_009092.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2879814 4921605 Shew_2449 Shewanella loihica PV-4 anaerobic ribonucleoside triphosphate reductase YP_001094574.1 2877697 R 323850 CDS YP_001094575.1 127513378 4921606 complement(2880065..2880802) 1 NC_009092.1 KEGG: shm:Shewmr7_2512 hypothetical protein; hypothetical protein 2880802 4921606 Shew_2450 Shewanella loihica PV-4 hypothetical protein YP_001094575.1 2880065 R 323850 CDS YP_001094576.1 127513379 4921496 complement(2881033..2882064) 1 NC_009092.1 PFAM: Patatin; KEGG: sfr:Sfri_2444 patatin; patatin 2882064 4921496 Shew_2451 Shewanella loihica PV-4 patatin YP_001094576.1 2881033 R 323850 CDS YP_001094577.1 127513380 4921497 2882168..2883550 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2883550 4921497 Shew_2452 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001094577.1 2882168 D 323850 CDS YP_001094578.1 127513381 4921498 2883867..2884307 1 NC_009092.1 KEGG: sdn:Sden_1416 hypothetical protein; hypothetical protein 2884307 4921498 Shew_2453 Shewanella loihica PV-4 hypothetical protein YP_001094578.1 2883867 D 323850 CDS YP_001094579.1 127513382 4921499 2884383..2884889 1 NC_009092.1 PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 2884889 4921499 Shew_2454 Shewanella loihica PV-4 hypothetical protein YP_001094579.1 2884383 D 323850 CDS YP_001094580.1 127513383 4921500 complement(2884964..2886220) 1 NC_009092.1 PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A, N-terminal domain protein; KEGG: shm:Shewmr7_2518 peptidase M23B; peptidase M23B 2886220 4921500 Shew_2455 Shewanella loihica PV-4 peptidase M23B YP_001094580.1 2884964 R 323850 CDS YP_001094581.1 127513384 4921501 complement(2886466..2889522) 1 NC_009092.1 PFAM: SMC domain protein; KEGG: son:SO2843 exonuclease SbcC, putative; SMC domain-containing protein 2889522 4921501 Shew_2456 Shewanella loihica PV-4 SMC domain-containing protein YP_001094581.1 2886466 R 323850 CDS YP_001094582.1 127513385 4921502 complement(2889519..2890661) 1 NC_009092.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shm:Shewmr7_2520 nuclease SbcCD, D subunit; nuclease SbcCD subunit D 2890661 4921502 Shew_2457 Shewanella loihica PV-4 nuclease SbcCD subunit D YP_001094582.1 2889519 R 323850 CDS YP_001094583.1 127513386 4921503 complement(2890901..2891761) 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: vpa:VPA1298 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 2891761 4921503 Shew_2458 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001094583.1 2890901 R 323850 CDS YP_001094584.1 127513387 4921504 complement(2892005..2892352) 1 NC_009092.1 KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein 2892352 4921504 Shew_2459 Shewanella loihica PV-4 hypothetical protein YP_001094584.1 2892005 R 323850 CDS YP_001094585.1 127513388 4921505 complement(2892459..2893502) 1 NC_009092.1 KEGG: chu:CHU_1911 conserved hypothetical protein with multiple MORN variant repeat domains; hypothetical protein 2893502 4921505 Shew_2460 Shewanella loihica PV-4 hypothetical protein YP_001094585.1 2892459 R 323850 CDS YP_001094586.1 127513389 4921506 complement(2893613..2895931) 1 NC_009092.1 PFAM: MORN variant repeat protein; KEGG: shm:Shewmr7_3193 hypothetical protein; MORN repeat-containing protein 2895931 4921506 Shew_2461 Shewanella loihica PV-4 MORN repeat-containing protein YP_001094586.1 2893613 R 323850 CDS YP_001094587.1 127513390 4921507 complement(2896062..2897870) 1 NC_009092.1 KEGG: she:Shewmr4_0831 MORN variant repeat protein; MORN repeat-containing protein 2897870 4921507 Shew_2462 Shewanella loihica PV-4 MORN repeat-containing protein YP_001094587.1 2896062 R 323850 CDS YP_001094588.1 127513391 4921508 complement(2897880..2900201) 1 NC_009092.1 KEGG: she:Shewmr4_0832 hypothetical protein; hypothetical protein 2900201 4921508 Shew_2463 Shewanella loihica PV-4 hypothetical protein YP_001094588.1 2897880 R 323850 CDS YP_001094589.1 127513392 4921509 complement(2900369..2901133) 1 NC_009092.1 PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein 2901133 4921509 Shew_2464 Shewanella loihica PV-4 hypothetical protein YP_001094589.1 2900369 R 323850 CDS YP_001094590.1 127513393 4921133 2901238..2902167 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_2452 transcriptional regulator, LysR family; LysR family transcriptional regulator 2902167 4921133 Shew_2465 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094590.1 2901238 D 323850 CDS YP_001094591.1 127513394 4921134 complement(2902171..2904141) 1 NC_009092.1 KEGG: son:SO0497 hypothetical protein; hypothetical protein 2904141 4921134 Shew_2466 Shewanella loihica PV-4 hypothetical protein YP_001094591.1 2902171 R 323850 CDS YP_001094592.1 127513395 4921135 complement(2904267..2904653) 1 NC_009092.1 PFAM: protein of unknown function DUF1260; KEGG: shm:Shewmr7_2523 protein of unknown function DUF1260; hypothetical protein 2904653 4921135 Shew_2467 Shewanella loihica PV-4 hypothetical protein YP_001094592.1 2904267 R 323850 CDS YP_001094593.1 127513396 4921136 complement(2904686..2904916) 1 NC_009092.1 KEGG: shm:Shewmr7_2524 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 2904916 4921136 Shew_2468 Shewanella loihica PV-4 RNA-binding S4 domain-containing protein YP_001094593.1 2904686 R 323850 CDS YP_001094594.1 127513397 4921137 complement(2904965..2905513) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2455 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2905513 4921137 Shew_2469 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094594.1 2904965 R 323850 CDS YP_001094595.1 127513398 4921138 complement(2905518..2905796) 1 NC_009092.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shm:Shewmr7_2526 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2905796 4921138 Shew_2470 Shewanella loihica PV-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001094595.1 2905518 R 323850 CDS YP_001094596.1 127513399 4921139 complement(2905888..2907723) 1 NC_009092.1 PFAM: protein of unknown function DUF885; KEGG: sfr:Sfri_2620 protein of unknown function DUF885; hypothetical protein 2907723 4921139 Shew_2471 Shewanella loihica PV-4 hypothetical protein YP_001094596.1 2905888 R 323850 CDS YP_001094597.1 127513400 4921140 2907803..2908312 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2528 diguanylate cyclase; diguanylate cyclase 2908312 4921140 Shew_2472 Shewanella loihica PV-4 diguanylate cyclase YP_001094597.1 2907803 D 323850 CDS YP_001094598.1 127513401 4921141 complement(2908372..2909619) 1 NC_009092.1 KEGG: sfr:Sfri_2621 tetratricopeptide domain protein; hypothetical protein 2909619 4921141 Shew_2473 Shewanella loihica PV-4 hypothetical protein YP_001094598.1 2908372 R 323850 CDS YP_001094599.1 127513402 4921142 complement(2909622..2910239) 1 NC_009092.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sdn:Sden_2421 TonB-like protein; TonB family protein 2910239 4921142 Shew_2474 Shewanella loihica PV-4 TonB family protein YP_001094599.1 2909622 R 323850 CDS YP_001094600.1 127513403 4921143 complement(2910241..2910645) 1 NC_009092.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2910645 4921143 Shew_2475 Shewanella loihica PV-4 biopolymer transport protein ExbD/TolR YP_001094600.1 2910241 R 323850 CDS YP_001094601.1 127513404 4921144 complement(2910659..2911186) 1 NC_009092.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: she:Shewmr4_2462 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2911186 4921144 Shew_2476 Shewanella loihica PV-4 MotA/TolQ/ExbB proton channel YP_001094601.1 2910659 R 323850 CDS YP_001094602.1 127513405 4921145 complement(2911186..2912541) 1 NC_009092.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2533 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2912541 4921145 Shew_2477 Shewanella loihica PV-4 MotA/TolQ/ExbB proton channel YP_001094602.1 2911186 R 323850 CDS YP_001094603.1 127513406 4921146 complement(2912541..2913323) 1 NC_009092.1 KEGG: sdn:Sden_2425 hypothetical protein; hypothetical protein 2913323 4921146 Shew_2478 Shewanella loihica PV-4 hypothetical protein YP_001094603.1 2912541 R 323850 CDS YP_001094604.1 127513407 4921147 complement(2913826..2914833) 1 NC_009092.1 PFAM: Methyltransferase type 11; KEGG: sfr:Sfri_2627 methyltransferase type 11; type 11 methyltransferase 2914833 4921147 Shew_2479 Shewanella loihica PV-4 type 11 methyltransferase YP_001094604.1 2913826 R 323850 CDS YP_001094605.1 127513408 4921375 complement(2914896..2917526) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2628 TonB-dependent receptor; TonB-dependent receptor 2917526 4921375 Shew_2480 Shewanella loihica PV-4 TonB-dependent receptor YP_001094605.1 2914896 R 323850 CDS YP_001094606.1 127513409 4921376 complement(2918374..2919585) 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2468 porin, gram-negative type; porin 2919585 4921376 Shew_2481 Shewanella loihica PV-4 porin YP_001094606.1 2918374 R 323850 CDS YP_001094607.1 127513410 4921377 complement(2919819..2922206) 1 NC_009092.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2922206 4921377 Shew_2482 Shewanella loihica PV-4 DNA polymerase II YP_001094607.1 2919819 R 323850 CDS YP_001094608.1 127513411 4921378 2922369..2924441 1 NC_009092.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 2924441 dinG 4921378 dinG Shewanella loihica PV-4 ATP-dependent DNA helicase DinG YP_001094608.1 2922369 D 323850 CDS YP_001094609.1 127513412 4921379 2924480..2925253 1 NC_009092.1 PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2539 protein of unknown function DUF81; hypothetical protein 2925253 4921379 Shew_2484 Shewanella loihica PV-4 hypothetical protein YP_001094609.1 2924480 D 323850 CDS YP_001094610.1 127513413 4921380 2925250..2925912 1 NC_009092.1 KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' 2925912 4921380 Shew_2485 Shewanella loihica PV-4 primosomal replication protein N'' YP_001094610.1 2925250 D 323850 CDS YP_001094611.1 127513414 4921381 2925922..2926611 1 NC_009092.1 KEGG: she:Shewmr4_2473 hypothetical protein; hypothetical protein 2926611 4921381 Shew_2486 Shewanella loihica PV-4 hypothetical protein YP_001094611.1 2925922 D 323850 CDS YP_001094612.1 127513415 4921382 2926619..2927521 1 NC_009092.1 PFAM: histone deacetylase superfamily; KEGG: she:Shewmr4_2474 histone deacetylase superfamily; histone deacetylase superfamily protein 2927521 4921382 Shew_2487 Shewanella loihica PV-4 histone deacetylase superfamily protein YP_001094612.1 2926619 D 323850 CDS YP_001094613.1 127513416 4921383 2927573..2927851 1 NC_009092.1 KEGG: son:SO1814 hypothetical protein; hypothetical protein 2927851 4921383 Shew_2488 Shewanella loihica PV-4 hypothetical protein YP_001094613.1 2927573 D 323850 CDS YP_001094614.1 127513417 4920912 complement(2928413..2928712) 1 NC_009092.1 KEGG: she:Shewmr4_2476 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA 2928712 4920912 Shew_2489 Shewanella loihica PV-4 helix-hairpin-helix repeat-containing competence protein ComEA YP_001094614.1 2928413 R 323850 CDS YP_001094615.1 127513418 4921385 2929103..2930494 1 NC_009092.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shm:Shewmr7_3574 anion transporter; anion transporter 2930494 4921385 Shew_2490 Shewanella loihica PV-4 anion transporter YP_001094615.1 2929103 D 323850 CDS YP_001094616.1 127513419 4921386 complement(2930577..2931752) 1 NC_009092.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1812 methionine gamma-lyase; methionine gamma-lyase 2931752 4921386 Shew_2491 Shewanella loihica PV-4 methionine gamma-lyase YP_001094616.1 2930577 R 323850 CDS YP_001094617.1 127513420 4921387 complement(2931878..2932972) 1 NC_009092.1 PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein; hypothetical protein 2932972 4921387 Shew_2492 Shewanella loihica PV-4 hypothetical protein YP_001094617.1 2931878 R 323850 CDS YP_001094618.1 127513421 4921388 complement(2933058..2934503) 1 NC_009092.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: sfr:Sfri_2575 protein of unknown function DUF463, YcjX family protein; hypothetical protein 2934503 4921388 Shew_2493 Shewanella loihica PV-4 hypothetical protein YP_001094618.1 2933058 R 323850 CDS YP_001094619.1 127513422 4921340 complement(2934593..2934988) 1 NC_009092.1 PFAM: PspC domain protein; KEGG: sfr:Sfri_2576 phage shock protein C, PspC; phage shock protein C, PspC 2934988 4921340 Shew_2494 Shewanella loihica PV-4 phage shock protein C, PspC YP_001094619.1 2934593 R 323850 CDS YP_001094620.1 127513423 4921341 complement(2934975..2935214) 1 NC_009092.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 2935214 pspB 4921341 pspB Shewanella loihica PV-4 phage shock protein B YP_001094620.1 2934975 R 323850 CDS YP_001094621.1 127513424 4921342 complement(2935235..2935918) 1 NC_009092.1 PFAM: PspA/IM30 family protein; KEGG: shm:Shewmr7_2550 phage shock protein A, PspA; phage shock protein A, PspA 2935918 4921342 Shew_2496 Shewanella loihica PV-4 phage shock protein A, PspA YP_001094621.1 2935235 R 323850 CDS YP_001094622.1 127513425 4921343 2936096..2937166 1 NC_009092.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2551 transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 2937166 4921343 Shew_2497 Shewanella loihica PV-4 sigma-54 dependent trancsriptional regulator YP_001094622.1 2936096 D 323850 CDS YP_001094623.1 127513426 4921344 2937254..2938897 1 NC_009092.1 PFAM: extracellular solute-binding protein, family 5; KEGG: she:Shewmr4_2484 extracellular solute-binding protein, family 5; extracellular solute-binding protein 2938897 4921344 Shew_2498 Shewanella loihica PV-4 extracellular solute-binding protein YP_001094623.1 2937254 D 323850 CDS YP_001094624.1 127513427 4921345 2938897..2939928 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2553 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2939928 4921345 Shew_2499 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001094624.1 2938897 D 323850 CDS YP_001094625.1 127513428 4921346 2939915..2940805 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2940805 4921346 Shew_2500 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001094625.1 2939915 D 323850 CDS YP_001094626.1 127513429 4921347 2940818..2941831 1 NC_009092.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-related protein; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: she:Shewmr4_2487 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase 2941831 4921347 Shew_2501 Shewanella loihica PV-4 oligopeptide/dipeptide ABC transporter ATPase YP_001094626.1 2940818 D 323850 CDS YP_001094627.1 127513430 4921348 2941806..2942591 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2488 ABC transporter-related protein; ABC transporter-like protein 2942591 4921348 Shew_2502 Shewanella loihica PV-4 ABC transporter-like protein YP_001094627.1 2941806 D 323850 CDS YP_001094628.1 127513431 4921349 2942696..2943898 1 NC_009092.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2943898 4921349 Shew_2503 Shewanella loihica PV-4 trans-2-enoyl-CoA reductase YP_001094628.1 2942696 D 323850 CDS YP_001094629.1 127513432 4921350 complement(2944391..2946256) 1 NC_009092.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 2946256 4921350 Shew_2504 Shewanella loihica PV-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001094629.1 2944391 R 323850 CDS YP_001094630.1 127513433 4921351 complement(2946482..2946754) 1 NC_009092.1 PFAM: histone family protein DNA-binding protein; KEGG: sfr:Sfri_2593 histone family protein DNA-binding protein; histone family protein DNA-binding protein 2946754 4921351 Shew_2505 Shewanella loihica PV-4 histone family protein DNA-binding protein YP_001094630.1 2946482 R 323850 CDS YP_001094631.1 127513434 4921352 complement(2947014..2949371) 1 NC_009092.1 KEGG: shm:Shewmr7_2561 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2949371 4921352 Shew_2506 Shewanella loihica PV-4 ATP-dependent protease La YP_001094631.1 2947014 R 323850 CDS YP_001094632.1 127513435 4921353 complement(2949498..2950778) 1 NC_009092.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2950778 clpX 4921353 clpX Shewanella loihica PV-4 ATP-dependent protease ATP-binding subunit ClpX YP_001094632.1 2949498 R 323850 CDS YP_001094633.1 127513436 4921354 complement(2950863..2951474) 1 NC_009092.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2951474 clpP 4921354 clpP Shewanella loihica PV-4 ATP-dependent Clp protease proteolytic subunit YP_001094633.1 2950863 R 323850 CDS YP_001094634.1 127513437 4921276 complement(2951564..2952868) 1 NC_009092.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2952868 tig 4921276 tig Shewanella loihica PV-4 trigger factor YP_001094634.1 2951564 R 323850 CDS YP_001094635.1 127513438 4920915 2953769..2954623 1 NC_009092.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2954623 4920915 Shew_2510 Shewanella loihica PV-4 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001094635.1 2953769 D 323850 CDS YP_001094636.1 127513439 4921278 complement(2954783..2956162) 1 NC_009092.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2956162 cysS 4921278 cysS Shewanella loihica PV-4 cysteinyl-tRNA synthetase YP_001094636.1 2954783 R 323850 CDS YP_001094637.1 127513440 4921279 2956409..2956921 1 NC_009092.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl isomerase 2956921 4921279 Shew_2512 Shewanella loihica PV-4 peptidyl-prolyl isomerase YP_001094637.1 2956409 D 323850 CDS YP_001094638.1 127513441 4921280 2956940..2957668 1 NC_009092.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2957668 4921280 Shew_2513 Shewanella loihica PV-4 UDP-2,3-diacylglucosamine hydrolase YP_001094638.1 2956940 D 323850 CDS YP_001094639.1 127513442 4921281 complement(2957742..2958512) 1 NC_009092.1 PFAM: tRNA--hydroxylase; KEGG: shm:Shewmr7_2569 tRNA hydroxylase; tRNA--hydroxylase 2958512 4921281 Shew_2514 Shewanella loihica PV-4 tRNA--hydroxylase YP_001094639.1 2957742 R 323850 CDS YP_001094640.1 127513443 4921282 2958763..2959359 1 NC_009092.1 PFAM: protein of unknown function DUF1282; KEGG: she:Shewmr4_2502 protein of unknown function DUF1282; hypothetical protein 2959359 4921282 Shew_2515 Shewanella loihica PV-4 hypothetical protein YP_001094640.1 2958763 D 323850 CDS YP_001094641.1 127513444 4921283 complement(2959443..2961113) 1 NC_009092.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2961113 4921283 Shew_2516 Shewanella loihica PV-4 glutaminyl-tRNA synthetase YP_001094641.1 2959443 R 323850 CDS YP_001094642.1 127513445 4921284 complement(2961319..2963613) 1 NC_009092.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 2963613 4921284 Shew_2517 Shewanella loihica PV-4 ferrous iron transport protein B YP_001094642.1 2961319 R 323850 CDS YP_001094643.1 127513446 4921285 complement(2963606..2963845) 1 NC_009092.1 PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A; FeoA family protein 2963845 4921285 Shew_2518 Shewanella loihica PV-4 FeoA family protein YP_001094643.1 2963606 R 323850 CDS YP_001094644.1 127513447 4921286 2964239..2965207 1 NC_009092.1 TIGRFAM: cytochrome C family protein; KEGG: shm:Shewmr7_2574 cytochrome c family protein; cytochrome C family protein 2965207 4921286 Shew_2519 Shewanella loihica PV-4 cytochrome C family protein YP_001094644.1 2964239 D 323850 CDS YP_001094645.1 127513448 4921287 2965223..2967334 1 NC_009092.1 KEGG: she:Shewmr4_2507 outer membrane protein, putative; outer membrane protein 2967334 4921287 Shew_2520 Shewanella loihica PV-4 outer membrane protein YP_001094645.1 2965223 D 323850 CDS YP_001094646.1 127513449 4921288 2967363..2969282 1 NC_009092.1 KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 2969282 4921288 Shew_2521 Shewanella loihica PV-4 decaheme cytochrome c MtrF YP_001094646.1 2967363 D 323850 CDS YP_001094647.1 127513450 4921289 2969343..2971505 1 NC_009092.1 KEGG: shm:Shewmr7_2577 decaheme cytochrome c; decaheme cytochrome c 2971505 4921289 Shew_2522 Shewanella loihica PV-4 decaheme cytochrome c YP_001094647.1 2969343 D 323850 CDS YP_001094648.1 127513451 4921228 2972045..2974318 1 NC_009092.1 KEGG: shm:Shewmr7_2577 decaheme cytochrome c; hypothetical protein 2974318 4921228 Shew_2523 Shewanella loihica PV-4 hypothetical protein YP_001094648.1 2972045 D 323850 CDS YP_001094649.1 127513452 4921229 2974805..2976982 1 NC_009092.1 KEGG: shm:Shewmr7_2577 decaheme cytochrome c; decaheme cytochrome c 2976982 4921229 Shew_2524 Shewanella loihica PV-4 decaheme cytochrome c YP_001094649.1 2974805 D 323850 CDS YP_001094650.1 127513453 4921230 2977355..2979325 1 NC_009092.1 KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c 2979325 4921230 Shew_2525 Shewanella loihica PV-4 decaheme cytochrome c YP_001094650.1 2977355 D 323850 CDS YP_001094651.1 127513454 4921231 2979407..2980396 1 NC_009092.1 TIGRFAM: cytochrome C family protein; KEGG: shm:Shewmr7_2579 cytochrome c family protein; cytochrome C family protein 2980396 4921231 Shew_2526 Shewanella loihica PV-4 cytochrome C family protein YP_001094651.1 2979407 D 323850 CDS YP_001094652.1 127513455 4921232 2980409..2982508 1 NC_009092.1 KEGG: shm:Shewmr7_2580 outer membrane protein precursor MtrB; outer membrane protein MtrB 2982508 4921232 Shew_2527 Shewanella loihica PV-4 outer membrane protein MtrB YP_001094652.1 2980409 D 323850 CDS YP_001094653.1 127513456 4921233 2982665..2983828 1 NC_009092.1 PFAM: sugar diacid recognition domain protein; KEGG: she:Shewmr4_2516 transcriptional regulator, CdaR; transcriptional regulator CdaR 2983828 4921233 Shew_2528 Shewanella loihica PV-4 transcriptional regulator CdaR YP_001094653.1 2982665 D 323850 CDS YP_001094654.1 127513457 4921234 complement(2983886..2985622) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0886 pseudouridine synthase; pseudouridine synthase 2985622 4921234 Shew_2529 Shewanella loihica PV-4 pseudouridine synthase YP_001094654.1 2983886 R 323850 CDS YP_001094655.1 127513458 4921235 complement(2985754..2986725) 1 NC_009092.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: vpa:VP2377 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 2986725 4921235 Shew_2530 Shewanella loihica PV-4 C4-dicarboxylate transporter/malic acid transport protein YP_001094655.1 2985754 R 323850 CDS YP_001094656.1 127513459 4921236 2986836..2987738 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VP2378 transcriptional regulator, LysR family; LysR family transcriptional regulator 2987738 4921236 Shew_2531 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094656.1 2986836 D 323850 CDS YP_001094657.1 127513460 4921237 2988971..2989774 1 NC_009092.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I); peptidase C26 2989774 4921237 Shew_2532 Shewanella loihica PV-4 peptidase C26 YP_001094657.1 2988971 D 323850 CDS YP_001094658.1 127513461 4921238 2990037..2991395 1 NC_009092.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: shm:Shewmr7_2586 gluconate transporter; gluconate transporter 2991395 4921238 Shew_2533 Shewanella loihica PV-4 gluconate transporter YP_001094658.1 2990037 D 323850 CDS YP_001094659.1 127513462 4921239 2991493..2992638 1 NC_009092.1 PFAM: glycerate kinase; KEGG: she:Shewmr4_2519 glycerate kinase; glycerate kinase 2992638 4921239 Shew_2534 Shewanella loihica PV-4 glycerate kinase YP_001094659.1 2991493 D 323850 CDS YP_001094660.1 127513463 4921240 2992865..2994505 1 NC_009092.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: she:Shewmr4_2520 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 2994505 4921240 Shew_2535 Shewanella loihica PV-4 pyridoxal-dependent decarboxylase YP_001094660.1 2992865 D 323850 CDS YP_001094661.1 127513464 4921241 complement(2994546..2995016) 1 NC_009092.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: pha:PSHAa1311 hypothetical protein; thiol-disulfide oxidoreductase 2995016 4921241 Shew_2536 Shewanella loihica PV-4 thiol-disulfide oxidoreductase YP_001094661.1 2994546 R 323850 CDS YP_001094662.1 127513465 4921242 2995324..2996262 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 2996262 4921242 Shew_2537 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001094662.1 2995324 D 323850 CDS YP_001094663.1 127513466 4921153 2996479..2997216 1 NC_009092.1 PFAM: AzlC family protein; KEGG: she:Shewmr4_2528 AzlC family protein; AzlC family protein 2997216 4921153 Shew_2538 Shewanella loihica PV-4 AzlC family protein YP_001094663.1 2996479 D 323850 CDS YP_001094664.1 127513467 4921154 2997213..2997518 1 NC_009092.1 PFAM: branched-chain amino acid transport; KEGG: she:Shewmr4_2529 branched-chain amino acid transport; branched-chain amino acid transport 2997518 4921154 Shew_2539 Shewanella loihica PV-4 branched-chain amino acid transport YP_001094664.1 2997213 D 323850 CDS YP_001094665.1 127513468 4921155 2997531..2997842 1 NC_009092.1 PFAM: NIPSNAP family containing protein; KEGG: bur:Bcep18194_B0447 protein of unknown function DUF1099; NIPSNAP family protein 2997842 4921155 Shew_2540 Shewanella loihica PV-4 NIPSNAP family protein YP_001094665.1 2997531 D 323850 CDS YP_001094666.1 127513469 4921156 complement(2997867..2998553) 1 NC_009092.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: shm:Shewmr7_2605 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein 2998553 4921156 Shew_2541 Shewanella loihica PV-4 helix-turn-helix, type 11 domain-containing protein YP_001094666.1 2997867 R 323850 CDS YP_001094667.1 127513470 4921157 complement(2998654..2999112) 1 NC_009092.1 PFAM: transcription activator, effector binding; KEGG: she:Shewmr4_2539 transcription activator, effector binding; transcription activator, effector binding 2999112 4921157 Shew_2542 Shewanella loihica PV-4 transcription activator, effector binding YP_001094667.1 2998654 R 323850 CDS YP_001094668.1 127513471 4921158 complement(2999246..2999665) 1 NC_009092.1 KEGG: cps:CPS_3399 glyoxalase family protein; glyoxalase family protein 2999665 4921158 Shew_2543 Shewanella loihica PV-4 glyoxalase family protein YP_001094668.1 2999246 R 323850 CDS YP_001094669.1 127513472 4921159 complement(2999834..3001588) 1 NC_009092.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: shm:Shewmr7_2608 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 3001588 4921159 Shew_2544 Shewanella loihica PV-4 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_001094669.1 2999834 R 323850 CDS YP_001094670.1 127513473 4921160 complement(3001822..3002727) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_3320 diguanylate cyclase; diguanylate cyclase 3002727 4921160 Shew_2545 Shewanella loihica PV-4 diguanylate cyclase YP_001094670.1 3001822 R 323850 CDS YP_001094671.1 127513474 4921161 complement(3002815..3003735) 1 NC_009092.1 KEGG: sfr:Sfri_1423 hypothetical protein; hypothetical protein 3003735 4921161 Shew_2546 Shewanella loihica PV-4 hypothetical protein YP_001094671.1 3002815 R 323850 CDS YP_001094672.1 127513475 4921162 3003986..3004849 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0787 pseudouridine synthase; pseudouridine synthase 3004849 4921162 Shew_2547 Shewanella loihica PV-4 pseudouridine synthase YP_001094672.1 3003986 D 323850 CDS YP_001094673.1 127513476 4921163 complement(3004857..3006845) 1 NC_009092.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vfi:VFA0260 glutathione-regulated potassium-efflux system protein KefC; potassium efflux system protein 3006845 4921163 Shew_2548 Shewanella loihica PV-4 potassium efflux system protein YP_001094673.1 3004857 R 323850 CDS YP_001094674.1 127513477 4921164 complement(3006851..3007468) 1 NC_009092.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vvy:VV2527 putative NADPH-quinone reductase; NAD(P)H dehydrogenase (quinone) 3007468 4921164 Shew_2549 Shewanella loihica PV-4 NAD(P)H dehydrogenase (quinone) YP_001094674.1 3006851 R 323850 CDS YP_001094675.1 127513478 4921165 complement(3007699..3008244) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_0926 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3008244 4921165 Shew_2550 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094675.1 3007699 R 323850 CDS YP_001094676.1 127513479 4921166 complement(3008237..3009202) 1 NC_009092.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3009202 4921166 Shew_2551 Shewanella loihica PV-4 homoserine O-succinyltransferase YP_001094676.1 3008237 R 323850 CDS YP_001094677.1 127513480 4921092 complement(3009276..3009677) 1 NC_009092.1 KEGG: son:SO1675 hypothetical protein; hypothetical protein 3009677 4921092 Shew_2552 Shewanella loihica PV-4 hypothetical protein YP_001094677.1 3009276 R 323850 CDS YP_001094678.1 127513481 4921093 3009796..3010566 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_2667 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3010566 4921093 Shew_2553 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001094678.1 3009796 D 323850 CDS YP_001094679.1 127513482 4921094 complement(3010647..3011288) 1 NC_009092.1 receptor for colicin S4; outer membrane protein W 3011288 4921094 Shew_2554 Shewanella loihica PV-4 outer membrane protein W YP_001094679.1 3010647 R 323850 CDS YP_001094680.1 127513483 4921095 complement(3012529..3012921) 1 NC_009092.1 KEGG: shm:Shewmr7_1695 hypothetical protein; hypothetical protein 3012921 4921095 Shew_2555 Shewanella loihica PV-4 hypothetical protein YP_001094680.1 3012529 R 323850 CDS YP_001094681.1 127513484 4921096 complement(3012950..3013813) 1 NC_009092.1 KEGG: shm:Shewmr7_1694 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3013813 4921096 Shew_2556 Shewanella loihica PV-4 acyl-CoA thioesterase II YP_001094681.1 3012950 R 323850 CDS YP_001094682.1 127513485 4921097 complement(3013951..3014871) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1693 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3014871 4921097 Shew_2557 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001094682.1 3013951 R 323850 CDS YP_001094683.1 127513486 4921098 3015276..3016148 1 NC_009092.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3016148 4921098 Shew_2558 Shewanella loihica PV-4 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_001094683.1 3015276 D 323850 CDS YP_001094684.1 127513487 4921099 complement(3016221..3016757) 1 NC_009092.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 3016757 4921099 Shew_2559 Shewanella loihica PV-4 malate synthase YP_001094684.1 3016221 R 323850 CDS YP_001094685.1 127513488 4921100 3016939..3018471 1 NC_009092.1 PFAM: helix-turn-helix domain protein; KEGG: she:Shewmr4_3851 transcriptional regulator, XRE family; XRE family transcriptional regulator 3018471 4921100 Shew_2560 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001094685.1 3016939 D 323850 CDS YP_001094686.1 127513489 4921101 complement(3018550..3020091) 1 NC_009092.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 3020091 4921101 Shew_2561 Shewanella loihica PV-4 6-phosphogluconate dehydrogenase YP_001094686.1 3018550 R 323850 CDS YP_001094687.1 127513490 4921102 complement(3020357..3020827) 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1157 putative transcriptional regulator, MarR family; MarR family transcriptional regulator 3020827 4921102 Shew_2562 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001094687.1 3020357 R 323850 CDS YP_001094688.1 127513491 4921103 3021146..3022141 1 NC_009092.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ppr:PBPRB1158 hypothetical alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 3022141 4921103 Shew_2563 Shewanella loihica PV-4 alcohol dehydrogenase YP_001094688.1 3021146 D 323850 CDS YP_001094689.1 127513492 4921104 3022340..3023152 1 NC_009092.1 PFAM: MltA-interacting MipA family protein; KEGG: vpa:VPA0318 putative outer membrane protein OmpV; MltA-interacting MipA family protein 3023152 4921104 Shew_2564 Shewanella loihica PV-4 MltA-interacting MipA family protein YP_001094689.1 3022340 D 323850 CDS YP_001094690.1 127513493 4921105 complement(3023374..3023628) 1 NC_009092.1 KEGG: sfr:Sfri_3620 hypothetical protein; hypothetical protein 3023628 4921105 Shew_2565 Shewanella loihica PV-4 hypothetical protein YP_001094690.1 3023374 R 323850 CDS YP_001094691.1 127513494 4921054 complement(3023766..3024239) 1 NC_009092.1 KEGG: son:SO4656 hypothetical protein; hypothetical protein 3024239 4921054 Shew_2566 Shewanella loihica PV-4 hypothetical protein YP_001094691.1 3023766 R 323850 CDS YP_001094692.1 127513495 4921055 complement(3024276..3025259) 1 NC_009092.1 PFAM: MORN variant repeat protein; KEGG: fnu:FN2119 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein 3025259 4921055 Shew_2567 Shewanella loihica PV-4 MORN repeat-containing protein YP_001094692.1 3024276 R 323850 CDS YP_001094693.1 127513496 4921056 complement(3025644..3027632) 1 NC_009092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_2391 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3027632 4921056 Shew_2568 Shewanella loihica PV-4 AMP-dependent synthetase and ligase YP_001094693.1 3025644 R 323850 CDS YP_001094694.1 127513497 4921057 3027951..3028352 1 NC_009092.1 PFAM: regulatory protein, MerR; KEGG: sdn:Sden_2244 regulatory protein, MerR; MerR family transcriptional regulator 3028352 4921057 Shew_2569 Shewanella loihica PV-4 MerR family transcriptional regulator YP_001094694.1 3027951 D 323850 CDS YP_001094695.1 127513498 4921058 3028464..3029633 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2394 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3029633 4921058 Shew_2570 Shewanella loihica PV-4 acyl-CoA dehydrogenase domain-containing protein YP_001094695.1 3028464 D 323850 CDS YP_001094696.1 127513499 4921059 3029723..3031330 1 NC_009092.1 PFAM: carboxyl transferase; KEGG: sdn:Sden_2246 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3031330 4921059 Shew_2571 Shewanella loihica PV-4 propionyl-CoA carboxylase YP_001094696.1 3029723 D 323850 CDS YP_001094697.1 127513500 4921060 3031379..3032179 1 NC_009092.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2396 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3032179 4921060 Shew_2572 Shewanella loihica PV-4 enoyl-CoA hydratase/isomerase YP_001094697.1 3031379 D 323850 CDS YP_001094698.1 127513501 4921061 3032237..3034270 1 NC_009092.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: shm:Shewmr7_2397 carbamoyl-phosphate synthase L chain, ATP-binding protein; carbamoyl-phosphate synthase subunit L 3034270 4921061 Shew_2573 Shewanella loihica PV-4 carbamoyl-phosphate synthase subunit L YP_001094698.1 3032237 D 323850 CDS YP_001094699.1 127513502 4921062 3034273..3035178 1 NC_009092.1 PFAM: pyruvate carboxyltransferase; KEGG: sfr:Sfri_2731 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3035178 4921062 Shew_2574 Shewanella loihica PV-4 pyruvate carboxyltransferase YP_001094699.1 3034273 D 323850 CDS YP_001094700.1 127513503 4921063 3035225..3035926 1 NC_009092.1 KEGG: shm:Shewmr7_2399 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3035926 4921063 Shew_2575 Shewanella loihica PV-4 3-oxoacid CoA-transferase subunit A YP_001094700.1 3035225 D 323850 CDS YP_001094701.1 127513504 4921064 3035939..3036595 1 NC_009092.1 KEGG: sdn:Sden_2252 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3036595 4921064 Shew_2576 Shewanella loihica PV-4 3-oxoacid CoA-transferase subunit B YP_001094701.1 3035939 D 323850 CDS YP_001094702.1 127513505 4921065 complement(3036686..3038260) 1 NC_009092.1 KEGG: shm:Shewmr7_1220 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3038260 4921065 Shew_2577 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_001094702.1 3036686 R 323850 CDS YP_001094703.1 127513506 4921066 3038648..3039451 1 NC_009092.1 PFAM: extracellular solute-binding protein, family 3; KEGG: ctc:CTC02323 sensory transduction protein kinase; extracellular solute-binding protein 3039451 4921066 Shew_2578 Shewanella loihica PV-4 extracellular solute-binding protein YP_001094703.1 3038648 D 323850 CDS YP_001094704.1 127513507 4921067 complement(3039632..3040210) 1 NC_009092.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3040210 4921067 Shew_2579 Shewanella loihica PV-4 thymidine kinase YP_001094704.1 3039632 R 323850 CDS YP_001094705.1 127513508 4921068 3041118..3043151 1 NC_009092.1 KEGG: shm:Shewmr7_1421 hypothetical protein; hypothetical protein 3043151 4921068 Shew_2580 Shewanella loihica PV-4 hypothetical protein YP_001094705.1 3041118 D 323850 CDS YP_001094706.1 127513509 4920887 3043336..3045480 1 NC_009092.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: she:Shewmr4_1355 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 3045480 4920887 Shew_2581 Shewanella loihica PV-4 peptidyl-dipeptidase Dcp YP_001094706.1 3043336 D 323850 CDS YP_001094707.1 127513510 4920888 complement(3045587..3047152) 1 NC_009092.1 PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3047152 4920888 Shew_2582 Shewanella loihica PV-4 Na+/H+ antiporter NhaC YP_001094707.1 3045587 R 323850 CDS YP_001094708.1 127513511 4920889 complement(3047596..3048519) 1 NC_009092.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: shm:Shewmr7_1418 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 3048519 4920889 Shew_2583 Shewanella loihica PV-4 electron transfer flavoprotein subunit alpha YP_001094708.1 3047596 R 323850 CDS YP_001094709.1 127513512 4920890 complement(3048520..3049269) 1 NC_009092.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: sfr:Sfri_2748 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 3049269 4920890 Shew_2584 Shewanella loihica PV-4 electron transfer flavoprotein subunit beta YP_001094709.1 3048520 R 323850 CDS YP_001094710.1 127513513 4920891 3049582..3049974 1 NC_009092.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shm:Shewmr7_1416 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3049974 4920891 Shew_2585 Shewanella loihica PV-4 histone family protein nucleoid-structuring protein H-NS YP_001094710.1 3049582 D 323850 CDS YP_001094711.1 127513514 4920892 3050329..3053469 1 NC_009092.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: she:Shewmr4_1350 amidohydrolase; amidohydrolase 3053469 4920892 Shew_2586 Shewanella loihica PV-4 amidohydrolase YP_001094711.1 3050329 D 323850 CDS YP_001094712.1 127513515 4920893 3053469..3054737 1 NC_009092.1 KEGG: son:SO3149 hypothetical protein; hypothetical protein 3054737 4920893 Shew_2587 Shewanella loihica PV-4 hypothetical protein YP_001094712.1 3053469 D 323850 CDS YP_001094713.1 127513516 4920894 3054815..3055231 1 NC_009092.1 KEGG: shm:Shewmr7_1413 lipoprotein, putative; putative lipoprotein 3055231 4920894 Shew_2588 Shewanella loihica PV-4 putative lipoprotein YP_001094713.1 3054815 D 323850 CDS YP_001094714.1 127513517 4920895 3055273..3056010 1 NC_009092.1 PFAM: protein of unknown function UPF0066; KEGG: she:Shewmr4_1347 protein of unknown function UPF0066; hypothetical protein 3056010 4920895 Shew_2589 Shewanella loihica PV-4 hypothetical protein YP_001094714.1 3055273 D 323850 CDS YP_001094715.1 127513518 4920896 3056013..3056642 1 NC_009092.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sfr:Sfri_2752 transferase hexapeptide repeat-containing protein; hexapaptide repeat-containing transferase 3056642 4920896 Shew_2590 Shewanella loihica PV-4 hexapaptide repeat-containing transferase YP_001094715.1 3056013 D 323850 CDS YP_001094716.1 127513519 4920897 complement(3056652..3056915) 1 NC_009092.1 hypothetical protein 3056915 4920897 Shew_2591 Shewanella loihica PV-4 hypothetical protein YP_001094716.1 3056652 R 323850 CDS YP_001094717.1 127513520 4920898 3057319..3058905 1 NC_009092.1 PFAM: peptidase M28; KEGG: sfr:Sfri_1287 peptidase M28; peptidase M28 3058905 4920898 Shew_2592 Shewanella loihica PV-4 peptidase M28 YP_001094717.1 3057319 D 323850 CDS YP_001094718.1 127513521 4920899 3059120..3060844 1 NC_009092.1 activates fatty acids by binding to coenzyme A; AMP-binding protein 3060844 4920899 Shew_2593 Shewanella loihica PV-4 AMP-binding protein YP_001094718.1 3059120 D 323850 CDS YP_001094719.1 127513522 4920900 complement(3060953..3061225) 1 NC_009092.1 hypothetical protein 3061225 4920900 Shew_2594 Shewanella loihica PV-4 hypothetical protein YP_001094719.1 3060953 R 323850 CDS YP_001094720.1 127513523 4920727 complement(3061373..3061678) 1 NC_009092.1 KEGG: cps:CPS_0198 hypothetical protein; hypothetical protein 3061678 4920727 Shew_2595 Shewanella loihica PV-4 hypothetical protein YP_001094720.1 3061373 R 323850 CDS YP_001094721.1 127513524 4920728 3062187..3063896 1 NC_009092.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3063896 4920728 Shew_2596 Shewanella loihica PV-4 prolyl-tRNA synthetase YP_001094721.1 3062187 D 323850 CDS YP_001094722.1 127513525 4920729 complement(3064009..3064725) 1 NC_009092.1 hypothetical protein 3064725 4920729 Shew_2597 Shewanella loihica PV-4 hypothetical protein YP_001094722.1 3064009 R 323850 CDS YP_001094723.1 127513526 4920730 complement(3065072..3065479) 1 NC_009092.1 KEGG: rpd:RPD_3143 hypothetical protein; hypothetical protein 3065479 4920730 Shew_2598 Shewanella loihica PV-4 hypothetical protein YP_001094723.1 3065072 R 323850 CDS YP_001094724.1 127513527 4920731 3065659..3065994 1 NC_009092.1 PFAM: helix-turn-helix, HxlR type; KEGG: vch:VCA0094 hypothetical protein; HxlR family transcriptional regulator 3065994 4920731 Shew_2599 Shewanella loihica PV-4 HxlR family transcriptional regulator YP_001094724.1 3065659 D 323850 CDS YP_001094725.1 127513528 4920732 complement(3066472..3066813) 1 NC_009092.1 KEGG: son:SO2061 hypothetical protein; hypothetical protein 3066813 4920732 Shew_2600 Shewanella loihica PV-4 hypothetical protein YP_001094725.1 3066472 R 323850 CDS YP_001094726.1 127513529 4920733 complement(3066922..3067329) 1 NC_009092.1 KEGG: shm:Shewmr7_0997 hypothetical protein; hypothetical protein 3067329 4920733 Shew_2601 Shewanella loihica PV-4 hypothetical protein YP_001094726.1 3066922 R 323850 CDS YP_001094727.1 127513530 4920734 complement(3068367..3068666) 1 NC_009092.1 hypothetical protein 3068666 4920734 Shew_2602 Shewanella loihica PV-4 hypothetical protein YP_001094727.1 3068367 R 323850 CDS YP_001094728.1 127513531 4920735 complement(3068762..3069088) 1 NC_009092.1 KEGG: pol:Bpro_4802 hypothetical protein; hypothetical protein 3069088 4920735 Shew_2603 Shewanella loihica PV-4 hypothetical protein YP_001094728.1 3068762 R 323850 CDS YP_001094729.1 127513532 4920736 complement(3069224..3070024) 1 NC_009092.1 PFAM: restriction endonuclease; KEGG: sfr:Sfri_2536 hypothetical protein; restriction endonuclease 3070024 4920736 Shew_2604 Shewanella loihica PV-4 restriction endonuclease YP_001094729.1 3069224 R 323850 CDS YP_001094730.1 127513533 4920737 complement(3070906..3072132) 1 NC_009092.1 KEGG: cps:CPS_3411 putative phenylacetate-coenzyme A ligase; putative phenylacetate-coenzyme A ligase 3072132 4920737 Shew_2605 Shewanella loihica PV-4 putative phenylacetate-coenzyme A ligase YP_001094730.1 3070906 R 323850 CDS YP_001094731.1 127513534 4920738 complement(3072142..3072960) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sfr:Sfri_1836 ABC transporter-related protein; ABC transporter-like protein 3072960 4920738 Shew_2606 Shewanella loihica PV-4 ABC transporter-like protein YP_001094731.1 3072142 R 323850 CDS YP_001094732.1 127513535 4920739 complement(3073024..3074268) 1 NC_009092.1 KEGG: sfr:Sfri_1835 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; putative branched-chain amino acid ABC transporter 3074268 4920739 Shew_2607 Shewanella loihica PV-4 putative branched-chain amino acid ABC transporter YP_001094732.1 3073024 R 323850 CDS YP_001094733.1 127513536 4920740 complement(3074392..3075465) 1 NC_009092.1 PFAM: inner-membrane translocator; KEGG: cps:CPS_3414 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 3075465 4920740 Shew_2608 Shewanella loihica PV-4 inner-membrane translocator YP_001094733.1 3074392 R 323850 CDS YP_001094734.1 127513537 4920741 complement(3075526..3076419) 1 NC_009092.1 PFAM: inner-membrane translocator; KEGG: cps:CPS_3415 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 3076419 4920741 Shew_2609 Shewanella loihica PV-4 inner-membrane translocator YP_001094734.1 3075526 R 323850 CDS YP_001094735.1 127513538 4920709 complement(3076416..3078383) 1 NC_009092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_3416 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding; AMP-dependent synthetase and ligase 3078383 4920709 Shew_2610 Shewanella loihica PV-4 AMP-dependent synthetase and ligase YP_001094735.1 3076416 R 323850 CDS YP_001094736.1 127513539 4920710 complement(3078383..3079180) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: cps:CPS_3417 putative branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 3079180 4920710 Shew_2611 Shewanella loihica PV-4 ABC transporter-like protein YP_001094736.1 3078383 R 323850 CDS YP_001094737.1 127513540 4920711 complement(3079299..3080339) 1 NC_009092.1 KEGG: cps:CPS_3418 hypothetical protein; hypothetical protein 3080339 4920711 Shew_2612 Shewanella loihica PV-4 hypothetical protein YP_001094737.1 3079299 R 323850 CDS YP_001094738.1 127513541 4920712 3080597..3084097 1 NC_009092.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sfr:Sfri_1829 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 3084097 4920712 Shew_2613 Shewanella loihica PV-4 integral membrane sensor hybrid histidine kinase YP_001094738.1 3080597 D 323850 CDS YP_001094739.1 127513542 4920713 complement(3084176..3084844) 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_3420 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 3084844 4920713 Shew_2614 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001094739.1 3084176 R 323850 CDS YP_001094740.1 127513543 4920714 3085347..3086471 1 NC_009092.1 PFAM: Patatin; KEGG: shm:Shewmr7_1409 patatin; patatin 3086471 4920714 Shew_2615 Shewanella loihica PV-4 patatin YP_001094740.1 3085347 D 323850 CDS YP_001094741.1 127513544 4920715 complement(3086492..3087169) 1 NC_009092.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bpm:BURPS1710b_0124 GDSL-like lipase/acylhydrolase domain protein; GDSL family lipase 3087169 4920715 Shew_2616 Shewanella loihica PV-4 GDSL family lipase YP_001094741.1 3086492 R 323850 CDS YP_001094742.1 127513545 4920716 complement(3087240..3089189) 1 NC_009092.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2690 potassium efflux system protein; potassium efflux system protein 3089189 4920716 Shew_2617 Shewanella loihica PV-4 potassium efflux system protein YP_001094742.1 3087240 R 323850 CDS YP_001094743.1 127513546 4920717 3089489..3090376 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2691 diguanylate cyclase; diguanylate cyclase 3090376 4920717 Shew_2618 Shewanella loihica PV-4 diguanylate cyclase YP_001094743.1 3089489 D 323850 CDS YP_001094744.1 127513547 4920718 complement(3090549..3091973) 1 NC_009092.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: shm:Shewmr7_2692 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 3091973 4920718 Shew_2619 Shewanella loihica PV-4 tRNA(Ile)-lysidine synthetase YP_001094744.1 3090549 R 323850 CDS YP_001094745.1 127513548 4920719 complement(3091974..3095447) 1 NC_009092.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3095447 dnaE 4920719 dnaE Shewanella loihica PV-4 DNA polymerase III subunit alpha YP_001094745.1 3091974 R 323850 CDS YP_001094746.1 127513549 4920720 complement(3095620..3096246) 1 NC_009092.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3096246 rnhB 4920720 rnhB Shewanella loihica PV-4 ribonuclease HII YP_001094746.1 3095620 R 323850 CDS YP_001094747.1 127513550 4920721 complement(3096246..3097394) 1 NC_009092.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3097394 lpxB 4920721 lpxB Shewanella loihica PV-4 lipid-A-disaccharide synthase YP_001094747.1 3096246 R 323850 CDS YP_001094748.1 127513551 4920722 complement(3097490..3098257) 1 NC_009092.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3098257 4920722 Shew_2623 Shewanella loihica PV-4 UDP-N-acetylglucosamine acyltransferase YP_001094748.1 3097490 R 323850 CDS YP_001094749.1 127513552 4923886 complement(3098254..3098715) 1 NC_009092.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3098715 fabZ 4923886 fabZ Shewanella loihica PV-4 (3R)-hydroxymyristoyl-ACP dehydratase YP_001094749.1 3098254 R 323850 CDS YP_001094750.1 127513553 4923887 complement(3098746..3099771) 1 NC_009092.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3099771 lpxD 4923887 lpxD Shewanella loihica PV-4 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001094750.1 3098746 R 323850 CDS YP_001094751.1 127513554 4923888 complement(3099778..3100272) 1 NC_009092.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: shm:Shewmr7_2699 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 3100272 4923888 Shew_2626 Shewanella loihica PV-4 outer membrane chaperone Skp YP_001094751.1 3099778 R 323850 CDS YP_001094752.1 127513555 4923889 complement(3100342..3102825) 1 NC_009092.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15) 3102825 4923889 Shew_2627 Shewanella loihica PV-4 surface antigen (D15) YP_001094752.1 3100342 R 323850 CDS YP_001094753.1 127513556 4923890 complement(3102857..3104218) 1 NC_009092.1 KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease 3104218 4923890 Shew_2628 Shewanella loihica PV-4 putative membrane-associated zinc metalloprotease YP_001094753.1 3102857 R 323850 CDS YP_001094754.1 127513557 4923891 complement(3104289..3105476) 1 NC_009092.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3105476 4923891 Shew_2629 Shewanella loihica PV-4 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001094754.1 3104289 R 323850 CDS YP_001094755.1 127513558 4923892 complement(3105479..3106264) 1 NC_009092.1 PFAM: phosphatidate cytidylyltransferase; KEGG: shm:Shewmr7_2703 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3106264 4923892 Shew_2630 Shewanella loihica PV-4 phosphatidate cytidylyltransferase YP_001094755.1 3105479 R 323850 CDS YP_001094756.1 127513559 4923893 complement(3106357..3107148) 1 NC_009092.1 KEGG: shm:Shewmr7_2704 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3107148 4923893 Shew_2631 Shewanella loihica PV-4 undecaprenyl diphosphate synthase YP_001094756.1 3106357 R 323850 CDS YP_001094757.1 127513560 4923894 complement(3107230..3107787) 1 NC_009092.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3107787 frr 4923894 frr Shewanella loihica PV-4 ribosome recycling factor YP_001094757.1 3107230 R 323850 CDS YP_001094758.1 127513561 4923895 complement(3107823..3108566) 1 NC_009092.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3108566 pyrH 4923895 pyrH Shewanella loihica PV-4 uridylate kinase YP_001094758.1 3107823 R 323850 CDS YP_001094759.1 127513562 4923896 complement(3108700..3109548) 1 NC_009092.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3109548 tsf 4923896 tsf Shewanella loihica PV-4 elongation factor Ts YP_001094759.1 3108700 R 323850 CDS YP_001094760.1 127513563 4923897 complement(3109668..3110396) 1 NC_009092.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3110396 rpsB 4923897 rpsB Shewanella loihica PV-4 30S ribosomal protein S2 YP_001094760.1 3109668 R 323850 CDS YP_001094761.1 127513564 4920680 3110676..3111473 1 NC_009092.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3111473 4920680 Shew_2636 Shewanella loihica PV-4 methionine aminopeptidase YP_001094761.1 3110676 D 323850 CDS YP_001094762.1 127513565 4923899 3111555..3114128 1 NC_009092.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3114128 4923899 Shew_2637 Shewanella loihica PV-4 PII uridylyl-transferase YP_001094762.1 3111555 D 323850 CDS YP_001094763.1 127513566 4923900 3114164..3114988 1 NC_009092.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3114988 dapD 4923900 dapD Shewanella loihica PV-4 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001094763.1 3114164 D 323850 CDS YP_001094764.1 127513567 4924117 3115199..3115543 1 NC_009092.1 KEGG: she:Shewmr4_2645 hypothetical protein; hypothetical protein 3115543 4924117 Shew_2639 Shewanella loihica PV-4 hypothetical protein YP_001094764.1 3115199 D 323850 CDS YP_001094765.1 127513568 4924118 complement(3115652..3116485) 1 NC_009092.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3116485 purU 4924118 purU Shewanella loihica PV-4 formyltetrahydrofolate deformylase YP_001094765.1 3115652 R 323850 CDS YP_001094766.1 127513569 4924119 complement(3116519..3117991) 1 NC_009092.1 TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: sfr:Sfri_1264 PTS system, glucose-like IIB subunint; PTS system glucose-like transporter subunit IIB 3117991 4924119 Shew_2641 Shewanella loihica PV-4 PTS system glucose-like transporter subunit IIB YP_001094766.1 3116519 R 323850 CDS YP_001094767.1 127513570 4924120 complement(3117943..3118407) 1 NC_009092.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3118407 4924120 Shew_2642 Shewanella loihica PV-4 flavodoxin YP_001094767.1 3117943 R 323850 CDS YP_001094768.1 127513571 4924121 complement(3118781..3119602) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: sfr:Sfri_1262 pseudouridylate synthase; pseudouridylate synthase 3119602 4924121 Shew_2643 Shewanella loihica PV-4 pseudouridylate synthase YP_001094768.1 3118781 R 323850 CDS YP_001094769.1 127513572 4924122 complement(3119613..3119930) 1 NC_009092.1 PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein; hypothetical protein 3119930 4924122 Shew_2644 Shewanella loihica PV-4 hypothetical protein YP_001094769.1 3119613 R 323850 CDS YP_001094770.1 127513573 4924123 3120114..3121127 1 NC_009092.1 KEGG: she:Shewmr4_2652 hypothetical protein; hypothetical protein 3121127 4924123 Shew_2645 Shewanella loihica PV-4 hypothetical protein YP_001094770.1 3120114 D 323850 CDS YP_001094771.1 127513574 4924124 3121124..3121513 1 NC_009092.1 KEGG: son:SO1617 hypothetical protein; hypothetical protein 3121513 4924124 Shew_2646 Shewanella loihica PV-4 hypothetical protein YP_001094771.1 3121124 D 323850 CDS YP_001094772.1 127513575 4924125 complement(3123264..3123563) 1 NC_009092.1 KEGG: son:SO1615 hypothetical protein; hypothetical protein 3123563 4924125 Shew_2647 Shewanella loihica PV-4 hypothetical protein YP_001094772.1 3123264 R 323850 CDS YP_001094773.1 127513576 4924126 complement(3123556..3124206) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3124206 4924126 Shew_2648 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094773.1 3123556 R 323850 CDS YP_001094774.1 127513577 4924127 3124347..3124577 1 NC_009092.1 KEGG: son:SO1613 hypothetical protein; hypothetical protein 3124577 4924127 Shew_2649 Shewanella loihica PV-4 hypothetical protein YP_001094774.1 3124347 D 323850 CDS YP_001094775.1 127513578 4924128 complement(3124727..3125098) 1 NC_009092.1 KEGG: son:SO1612 hypothetical protein; hypothetical protein 3125098 4924128 Shew_2650 Shewanella loihica PV-4 hypothetical protein YP_001094775.1 3124727 R 323850 CDS YP_001094776.1 127513579 4924129 3125247..3125582 1 NC_009092.1 KEGG: sfr:Sfri_1252 hypothetical protein; hypothetical protein 3125582 4924129 Shew_2651 Shewanella loihica PV-4 hypothetical protein YP_001094776.1 3125247 D 323850 CDS YP_001094777.1 127513580 4924130 3125582..3126355 1 NC_009092.1 KEGG: shm:Shewmr7_2726 hypothetical protein; hypothetical protein 3126355 4924130 Shew_2652 Shewanella loihica PV-4 hypothetical protein YP_001094777.1 3125582 D 323850 CDS YP_001094778.1 127513581 4923305 complement(3126400..3127062) 1 NC_009092.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3127062 4923305 Shew_2653 Shewanella loihica PV-4 SecY interacting protein Syd YP_001094778.1 3126400 R 323850 CDS YP_001094779.1 127513582 4923306 3127090..3127980 1 NC_009092.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3127980 queF 4923306 queF Shewanella loihica PV-4 7-cyano-7-deazaguanine reductase YP_001094779.1 3127090 D 323850 CDS YP_001094780.1 127513583 4923307 3128303..3129493 1 NC_009092.1 KEGG: sde:Sde_2267 hypothetical protein; hypothetical protein 3129493 4923307 Shew_2655 Shewanella loihica PV-4 hypothetical protein YP_001094780.1 3128303 D 323850 CDS YP_001094781.1 127513584 4923308 complement(3129695..3130606) 1 NC_009092.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase 3130606 4923308 Shew_2656 Shewanella loihica PV-4 4'-phosphopantetheinyl transferase YP_001094781.1 3129695 R 323850 CDS YP_001094782.1 127513585 4923309 complement(3130786..3132051) 1 NC_009092.1 KEGG: ppr:PBPRB1123 hypothetical protein; hypothetical protein 3132051 4923309 Shew_2657 Shewanella loihica PV-4 hypothetical protein YP_001094782.1 3130786 R 323850 CDS YP_001094783.1 127513586 4923310 complement(3132095..3132778) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein; ABC transporter-like protein 3132778 4923310 Shew_2658 Shewanella loihica PV-4 ABC transporter-like protein YP_001094783.1 3132095 R 323850 CDS YP_001094784.1 127513587 4923311 complement(3132800..3134065) 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRB1125 hypothetical protein; hypothetical protein 3134065 4923311 Shew_2659 Shewanella loihica PV-4 hypothetical protein YP_001094784.1 3132800 R 323850 CDS YP_001094785.1 127513588 4923312 complement(3134052..3135284) 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRB1126 hypothetical protein; hypothetical protein 3135284 4923312 Shew_2660 Shewanella loihica PV-4 hypothetical protein YP_001094785.1 3134052 R 323850 CDS YP_001094786.1 127513589 4923313 complement(3135394..3136206) 1 NC_009092.1 KEGG: vpa:VPA0557 hypothetical protein; hypothetical protein 3136206 4923313 Shew_2661 Shewanella loihica PV-4 hypothetical protein YP_001094786.1 3135394 R 323850 CDS YP_001094787.1 127513590 4923314 complement(3136343..3136702) 1 NC_009092.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel; cupin 3136702 4923314 Shew_2662 Shewanella loihica PV-4 cupin YP_001094787.1 3136343 R 323850 CDS YP_001094788.1 127513591 4923315 complement(3136916..3138964) 1 NC_009092.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3138964 4923315 Shew_2663 Shewanella loihica PV-4 elongation factor G YP_001094788.1 3136916 R 323850 CDS YP_001094789.1 127513592 4923316 3139363..3140217 1 NC_009092.1 KEGG: shm:Shewmr7_2732 transcriptional regulator, putative; transcriptional regulator 3140217 4923316 Shew_2664 Shewanella loihica PV-4 transcriptional regulator YP_001094789.1 3139363 D 323850 CDS YP_001094790.1 127513593 4923317 3140217..3148076 1 NC_009092.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; beta-ketoacyl synthase 3148076 4923317 Shew_2665 Shewanella loihica PV-4 beta-ketoacyl synthase YP_001094790.1 3140217 D 323850 CDS YP_001094791.1 127513594 4923318 3148073..3150223 1 NC_009092.1 KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 3150223 4923318 Shew_2666 Shewanella loihica PV-4 omega-3 polyunsaturated fatty acid synthase PfaB YP_001094791.1 3148073 D 323850 CDS YP_001094792.1 127513595 4923120 3150223..3156009 1 NC_009092.1 PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 3156009 4923120 Shew_2667 Shewanella loihica PV-4 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001094792.1 3150223 D 323850 CDS YP_001094793.1 127513596 4923121 3156144..3157781 1 NC_009092.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sfr:Sfri_1218 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3157781 4923121 Shew_2668 Shewanella loihica PV-4 2-nitropropane dioxygenase YP_001094793.1 3156144 D 323850 CDS YP_001094794.1 127513597 4923122 complement(3157890..3160238) 1 NC_009092.1 PFAM: peptidase S45, penicillin amidase; KEGG: pha:PSHAa0079 hydrolase; penicillin amidase 3160238 4923122 Shew_2669 Shewanella loihica PV-4 penicillin amidase YP_001094794.1 3157890 R 323850 CDS YP_001094795.1 127513598 4923123 complement(3160362..3161273) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_0384 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 3161273 4923123 Shew_2670 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094795.1 3160362 R 323850 CDS YP_001094796.1 127513599 4923124 complement(3161532..3162494) 1 NC_009092.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: sth:STH2125 putative lipase; alpha/beta hydrolase domain-containing protein 3162494 4923124 Shew_2671 Shewanella loihica PV-4 alpha/beta hydrolase domain-containing protein YP_001094796.1 3161532 R 323850 CDS YP_001094797.1 127513600 4923125 complement(3162660..3163445) 1 NC_009092.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 3163445 4923125 Shew_2672 Shewanella loihica PV-4 carnitinyl-CoA dehydratase YP_001094797.1 3162660 R 323850 CDS YP_001094798.1 127513601 4923126 complement(3163503..3165059) 1 NC_009092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: stm:STM0071 crotonobetaine/carnitine-CoA ligase; putative crotonobetaine/carnitine-CoA ligase 3165059 caiC 4923126 caiC Shewanella loihica PV-4 putative crotonobetaine/carnitine-CoA ligase YP_001094798.1 3163503 R 323850 CDS YP_001094799.1 127513602 4923127 complement(3165068..3166294) 1 NC_009092.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 3166294 4923127 Shew_2674 Shewanella loihica PV-4 crotonobetainyl-CoA:carnitine CoA-transferase YP_001094799.1 3165068 R 323850 CDS YP_001094800.1 127513603 4923128 complement(3166455..3167591) 1 NC_009092.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 3167591 4923128 Shew_2675 Shewanella loihica PV-4 crotonobetainyl-CoA dehydrogenase YP_001094800.1 3166455 R 323850 CDS YP_001094801.1 127513604 4923129 complement(3167643..3169187) 1 NC_009092.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 3169187 4923129 Shew_2676 Shewanella loihica PV-4 L-carnitine/gamma-butyrobetaine antiporter YP_001094801.1 3167643 R 323850 CDS YP_001094802.1 127513605 4923130 3170094..3170867 1 NC_009092.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 3170867 4923130 Shew_2677 Shewanella loihica PV-4 putative electron transfer flavoprotein FixA YP_001094802.1 3170094 D 323850 CDS YP_001094803.1 127513606 4923131 3170882..3171823 1 NC_009092.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: stm:STM0076 putative electron transfer flavoprotein, carnitine metabolism; electron transfer flavoprotein subunit alpha 3171823 4923131 Shew_2678 Shewanella loihica PV-4 electron transfer flavoprotein subunit alpha YP_001094803.1 3170882 D 323850 CDS YP_001094804.1 127513607 4923132 3171890..3173182 1 NC_009092.1 PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stt:t0078 FixC protein; FAD dependent oxidoreductase 3173182 4923132 Shew_2679 Shewanella loihica PV-4 FAD dependent oxidoreductase YP_001094804.1 3171890 D 323850 CDS YP_001094805.1 127513608 4923133 3173179..3173466 1 NC_009092.1 KEGG: stm:STM1351 putative ferredoxin; putative ferredoxin 3173466 4923133 Shew_2680 Shewanella loihica PV-4 putative ferredoxin YP_001094805.1 3173179 D 323850 CDS YP_001094806.1 127513609 4923134 3173838..3175154 1 NC_009092.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: stm:STM0079 putative transport protein; general substrate transporter 3175154 4923134 Shew_2681 Shewanella loihica PV-4 general substrate transporter YP_001094806.1 3173838 D 323850 CDS YP_001094807.1 127513610 4923191 3175416..3176543 1 NC_009092.1 KEGG: son:SO1412 hypothetical protein; hypothetical protein 3176543 4923191 Shew_2682 Shewanella loihica PV-4 hypothetical protein YP_001094807.1 3175416 D 323850 CDS YP_001094808.1 127513611 4923192 3176734..3176985 1 NC_009092.1 KEGG: sfr:Sfri_3228 hypothetical protein; hypothetical protein 3176985 4923192 Shew_2683 Shewanella loihica PV-4 hypothetical protein YP_001094808.1 3176734 D 323850 CDS YP_001094809.1 127513612 4923193 3177228..3178094 1 NC_009092.1 KEGG: she:Shewmr4_3453 hypothetical protein; hypothetical protein 3178094 4923193 Shew_2684 Shewanella loihica PV-4 hypothetical protein YP_001094809.1 3177228 D 323850 CDS YP_001094810.1 127513613 4923194 complement(3178527..3179114) 1 NC_009092.1 KEGG: cps:CPS_2706 putative lipoprotein; putative lipoprotein 3179114 4923194 Shew_2685 Shewanella loihica PV-4 putative lipoprotein YP_001094810.1 3178527 R 323850 CDS YP_001094811.1 127513614 4923195 complement(3179572..3180159) 1 NC_009092.1 KEGG: cps:CPS_2706 putative lipoprotein; putative lipoprotein 3180159 4923195 Shew_2686 Shewanella loihica PV-4 putative lipoprotein YP_001094811.1 3179572 R 323850 CDS YP_001094812.1 127513615 4923196 3180622..3181428 1 NC_009092.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter substrate-binding protein 3181428 4923196 Shew_2687 Shewanella loihica PV-4 molybdate ABC transporter substrate-binding protein YP_001094812.1 3180622 D 323850 CDS YP_001094813.1 127513616 4923197 complement(3181552..3182889) 1 NC_009092.1 KEGG: sfr:Sfri_3605 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3182889 4923197 Shew_2688 Shewanella loihica PV-4 amidohydrolase YP_001094813.1 3181552 R 323850 CDS YP_001094814.1 127513617 4923198 3183112..3183957 1 NC_009092.1 PFAM: sulfotransferase; KEGG: sfr:Sfri_0789 sulfotransferase; sulfotransferase 3183957 4923198 Shew_2689 Shewanella loihica PV-4 sulfotransferase YP_001094814.1 3183112 D 323850 CDS YP_001094815.1 127513618 4923199 complement(3184027..3186465) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_1347 TonB-dependent receptor; TonB-dependent receptor, plug 3186465 4923199 Shew_2690 Shewanella loihica PV-4 TonB-dependent receptor, plug YP_001094815.1 3184027 R 323850 CDS YP_001094816.1 127513619 4923200 complement(3186780..3187310) 1 NC_009092.1 KEGG: shm:Shewmr7_3765 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 3187310 4923200 Shew_2691 Shewanella loihica PV-4 OmpA domain-containing protein YP_001094816.1 3186780 R 323850 CDS YP_001094817.1 127513620 4923201 complement(3187556..3188341) 1 NC_009092.1 PFAM: cytochrome B561; KEGG: shm:Shewmr7_2387 cytochrome b561; cytochrome B561 3188341 4923201 Shew_2692 Shewanella loihica PV-4 cytochrome B561 YP_001094817.1 3187556 R 323850 CDS YP_001094818.1 127513621 4923202 complement(3188495..3189448) 1 NC_009092.1 KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein 3189448 4923202 Shew_2693 Shewanella loihica PV-4 hypothetical protein YP_001094818.1 3188495 R 323850 CDS YP_001094819.1 127513622 4923203 3189711..3190028 1 NC_009092.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: sfr:Sfri_1133 propeptide, PepSY amd peptidase M4; peptidase 3190028 4923203 Shew_2694 Shewanella loihica PV-4 peptidase YP_001094819.1 3189711 D 323850 CDS YP_001094820.1 127513623 4923204 3190051..3190731 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: she:Shewmr4_3817 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3190731 4923204 Shew_2695 Shewanella loihica PV-4 two component transcriptional regulator YP_001094820.1 3190051 D 323850 CDS YP_001094821.1 127513624 4922981 3190749..3192203 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_1263 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase 3192203 4922981 Shew_2696 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001094821.1 3190749 D 323850 CDS YP_001094822.1 127513625 4922982 3192364..3193740 1 NC_009092.1 KEGG: she:Shewmr4_3819 hypothetical protein; hypothetical protein 3193740 4922982 Shew_2697 Shewanella loihica PV-4 hypothetical protein YP_001094822.1 3192364 D 323850 CDS YP_001094823.1 127513626 4922983 complement(3193908..3194420) 1 NC_009092.1 KEGG: she:Shewmr4_2687 hypothetical protein; hypothetical protein 3194420 4922983 Shew_2698 Shewanella loihica PV-4 hypothetical protein YP_001094823.1 3193908 R 323850 CDS YP_001094824.1 127513627 4922984 complement(3194642..3195220) 1 NC_009092.1 PFAM: cyclic nucleotide-binding; KEGG: shm:Shewmr7_2756 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 3195220 4922984 Shew_2699 Shewanella loihica PV-4 cyclic nucleotide-binding protein YP_001094824.1 3194642 R 323850 CDS YP_001094825.1 127513628 4922985 3195374..3195763 1 NC_009092.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppr:PBPRB1064 hypothetical protein; antibiotic biosynthesis monooxygenase 3195763 4922985 Shew_2700 Shewanella loihica PV-4 antibiotic biosynthesis monooxygenase YP_001094825.1 3195374 D 323850 CDS YP_001094826.1 127513629 4922986 complement(3195846..3196913) 1 NC_009092.1 KEGG: mac:MA3214 hypothetical protein; hypothetical protein 3196913 4922986 Shew_2701 Shewanella loihica PV-4 hypothetical protein YP_001094826.1 3195846 R 323850 CDS YP_001094827.1 127513630 4922987 complement(3197490..3198260) 1 NC_009092.1 hypothetical protein 3198260 4922987 Shew_2702 Shewanella loihica PV-4 hypothetical protein YP_001094827.1 3197490 R 323850 CDS YP_001094828.1 127513631 4922988 3198442..3200523 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpf:lpl1180 hypothetical protein; Sel1 domain-containing protein 3200523 4922988 Shew_2703 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001094828.1 3198442 D 323850 CDS YP_001094829.1 127513632 4922989 complement(3200581..3201798) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3201798 4922989 Shew_2704 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit F YP_001094829.1 3200581 R 323850 CDS YP_001094830.1 127513633 4922990 complement(3201840..3202448) 1 NC_009092.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3202448 4922990 Shew_2705 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit E YP_001094830.1 3201840 R 323850 CDS YP_001094831.1 127513634 4922991 complement(3202453..3203076) 1 NC_009092.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3203076 4922991 Shew_2706 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit D YP_001094831.1 3202453 R 323850 CDS YP_001094832.1 127513635 4922992 complement(3203078..3203848) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3203848 4922992 Shew_2707 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit C YP_001094832.1 3203078 R 323850 CDS YP_001094833.1 127513636 4922993 complement(3203957..3205171) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3205171 4922993 Shew_2708 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit B YP_001094833.1 3203957 R 323850 CDS YP_001094834.1 127513637 4922994 complement(3205171..3206541) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3206541 4922994 Shew_2709 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit A YP_001094834.1 3205171 R 323850 CDS YP_001094835.1 127513638 4922995 3207004..3208293 1 NC_009092.1 KEGG: sdn:Sden_0823 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 3208293 4922995 Shew_2710 Shewanella loihica PV-4 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001094835.1 3207004 D 323850 CDS YP_001094836.1 127513639 4922941 3208607..3209395 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A0140 transcriptional regulator, AraC family; AraC family transcriptional regulator 3209395 4922941 Shew_2711 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001094836.1 3208607 D 323850 CDS YP_001094837.1 127513640 4922942 3209487..3210416 1 NC_009092.1 PFAM: peptidase S15; KEGG: pae:PA3829 hypothetical protein; peptidase S15 3210416 4922942 Shew_2712 Shewanella loihica PV-4 peptidase S15 YP_001094837.1 3209487 D 323850 CDS YP_001094838.1 127513641 4922943 3210601..3211713 1 NC_009092.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: hch:HCH_00654 response regulator containing a CheY-like receiver domain and an HD-GYP domain; metal dependent phosphohydrolase 3211713 4922943 Shew_2713 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001094838.1 3210601 D 323850 CDS YP_001094839.1 127513642 4922944 complement(3212018..3212773) 1 NC_009092.1 KEGG: sfr:Sfri_3123 hypothetical protein; hypothetical protein 3212773 4922944 Shew_2714 Shewanella loihica PV-4 hypothetical protein YP_001094839.1 3212018 R 323850 CDS YP_001094840.1 127513643 4922945 complement(3213214..3213945) 1 NC_009092.1 PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein 3213945 4922945 Shew_2715 Shewanella loihica PV-4 hypothetical protein YP_001094840.1 3213214 R 323850 CDS YP_001094841.1 127513644 4922946 3214473..3216041 1 NC_009092.1 PFAM: peptidase S41; KEGG: sfr:Sfri_0592 peptidase S41; peptidase S41 3216041 4922946 Shew_2716 Shewanella loihica PV-4 peptidase S41 YP_001094841.1 3214473 D 323850 CDS YP_001094842.1 127513645 4922947 3216050..3216439 1 NC_009092.1 KEGG: sfr:Sfri_0593 hypothetical protein; hypothetical protein 3216439 4922947 Shew_2717 Shewanella loihica PV-4 hypothetical protein YP_001094842.1 3216050 D 323850 CDS YP_001094843.1 127513646 4922948 3216809..3219220 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_0415 TonB-dependent receptor; TonB-dependent receptor 3219220 4922948 Shew_2718 Shewanella loihica PV-4 TonB-dependent receptor YP_001094843.1 3216809 D 323850 CDS YP_001094844.1 127513647 4922949 3219369..3219554 1 NC_009092.1 KEGG: vch:VC1858 hypothetical protein; hypothetical protein 3219554 4922949 Shew_2719 Shewanella loihica PV-4 hypothetical protein YP_001094844.1 3219369 D 323850 CDS YP_001094845.1 127513648 4922950 complement(3219709..3221550) 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 3221550 4922950 Shew_2720 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001094845.1 3219709 R 323850 CDS YP_001094846.1 127513649 4922951 3221882..3222154 1 NC_009092.1 KEGG: son:SO1588 hypothetical protein; hypothetical protein 3222154 4922951 Shew_2721 Shewanella loihica PV-4 hypothetical protein YP_001094846.1 3221882 D 323850 CDS YP_001094847.1 127513650 4922952 3222236..3222943 1 NC_009092.1 KEGG: sdn:Sden_2403 hypothetical protein; hypothetical protein 3222943 4922952 Shew_2722 Shewanella loihica PV-4 hypothetical protein YP_001094847.1 3222236 D 323850 CDS YP_001094848.1 127513651 4922953 3222990..3223526 1 NC_009092.1 PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0617 putative MutT/NUDIX family protein; NUDIX hydrolase 3223526 4922953 Shew_2723 Shewanella loihica PV-4 NUDIX hydrolase YP_001094848.1 3222990 D 323850 CDS YP_001094849.1 127513652 4922954 complement(3223621..3224535) 1 NC_009092.1 PFAM: Indigoidine synthase A family protein; KEGG: hch:HCH_01392 uncharacterized enzyme involved in pigment biosynthesis; indigoidine synthase A family protein 3224535 4922954 Shew_2724 Shewanella loihica PV-4 indigoidine synthase A family protein YP_001094849.1 3223621 R 323850 CDS YP_001094850.1 127513653 4922921 complement(3224529..3225620) 1 NC_009092.1 PFAM: PfkB domain protein; Helix-turn-helix, type 11 domain protein; KEGG: hch:HCH_01393 sugar kinase, ribokinase family; ribokinase-like domain-containing protein 3225620 4922921 Shew_2725 Shewanella loihica PV-4 ribokinase-like domain-containing protein YP_001094850.1 3224529 R 323850 CDS YP_001094851.1 127513654 4922922 complement(3225951..3226403) 1 NC_009092.1 PFAM: protein of unknown function DUF188; KEGG: cps:CPS_3584 hypothetical protein; hypothetical protein 3226403 4922922 Shew_2726 Shewanella loihica PV-4 hypothetical protein YP_001094851.1 3225951 R 323850 CDS YP_001094852.1 127513655 4922923 3226571..3227269 1 NC_009092.1 KEGG: shm:Shewmr7_2761 hypothetical protein; hypothetical protein 3227269 4922923 Shew_2727 Shewanella loihica PV-4 hypothetical protein YP_001094852.1 3226571 D 323850 CDS YP_001094853.1 127513656 4922924 3227282..3228163 1 NC_009092.1 KEGG: lic:LIC10692 hypothetical protein; hypothetical protein 3228163 4922924 Shew_2728 Shewanella loihica PV-4 hypothetical protein YP_001094853.1 3227282 D 323850 CDS YP_001094854.1 127513657 4922925 complement(3228287..3228877) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_2762 transcriptional regulator, TetR family; TetR family transcriptional regulator 3228877 4922925 Shew_2729 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001094854.1 3228287 R 323850 CDS YP_001094855.1 127513658 4922926 3229038..3229673 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: son:SO1577 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3229673 4922926 Shew_2730 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001094855.1 3229038 D 323850 CDS YP_001094856.1 127513659 4922927 complement(3229835..3230395) 1 NC_009092.1 hypothetical protein 3230395 4922927 Shew_2731 Shewanella loihica PV-4 hypothetical protein YP_001094856.1 3229835 R 323850 CDS YP_001094857.1 127513660 4922928 complement(3230428..3230904) 1 NC_009092.1 KEGG: mag:amb3154 hypothetical protein; hypothetical protein 3230904 4922928 Shew_2732 Shewanella loihica PV-4 hypothetical protein YP_001094857.1 3230428 R 323850 CDS YP_001094858.1 127513661 4922929 complement(3231014..3231358) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: chy:CHY_0724 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 3231358 4922929 Shew_2733 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094858.1 3231014 R 323850 CDS YP_001094859.1 127513662 4922930 complement(3231868..3232251) 1 NC_009092.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: shm:Shewmr7_0571 carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 3232251 4922930 Shew_2734 Shewanella loihica PV-4 4-carboxymuconolactone decarboxylase YP_001094859.1 3231868 R 323850 CDS YP_001094860.1 127513663 4922931 complement(3232509..3233423) 1 NC_009092.1 PFAM: Patatin; KEGG: she:Shewmr4_3733 patatin; patatin 3233423 4922931 Shew_2735 Shewanella loihica PV-4 patatin YP_001094860.1 3232509 R 323850 CDS YP_001094861.1 127513664 4922932 complement(3233472..3233948) 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_2839 transcriptional regulator, MarR family; MarR family transcriptional regulator 3233948 4922932 Shew_2736 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001094861.1 3233472 R 323850 CDS YP_001094862.1 127513665 4922933 complement(3234151..3234939) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cps:CPS_4694 transcriptional regulator, AraC family; AraC family transcriptional regulator 3234939 4922933 Shew_2737 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001094862.1 3234151 R 323850 CDS YP_001094863.1 127513666 4922934 complement(3234978..3235421) 1 NC_009092.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_2623 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 3235421 4922934 Shew_2738 Shewanella loihica PV-4 alkylhydroperoxidase YP_001094863.1 3234978 R 323850 CDS YP_001094864.1 127513667 4922935 3235811..3237238 1 NC_009092.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein 3237238 4922935 Shew_2739 Shewanella loihica PV-4 Fmu (Sun) domain-containing protein YP_001094864.1 3235811 D 323850 CDS YP_001094865.1 127513668 4922907 complement(3237800..3238333) 1 NC_009092.1 PFAM: YfaZ family protein; KEGG: shm:Shewmr7_2770 YfaZ family protein; hypothetical protein 3238333 4922907 Shew_2740 Shewanella loihica PV-4 hypothetical protein YP_001094865.1 3237800 R 323850 CDS YP_001094866.1 127513669 4922908 3238632..3239120 1 NC_009092.1 PFAM: glutathione peroxidase; KEGG: sdn:Sden_2552 glutathione peroxidase; glutathione peroxidase 3239120 4922908 Shew_2741 Shewanella loihica PV-4 glutathione peroxidase YP_001094866.1 3238632 D 323850 CDS YP_001094867.1 127513670 4922909 complement(3240013..3241833) 1 NC_009092.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_2706 peptidase M1, membrane alanine aminopeptidase; peptidase M1, membrane alanine aminopeptidase 3241833 4922909 Shew_2742 Shewanella loihica PV-4 peptidase M1, membrane alanine aminopeptidase YP_001094867.1 3240013 R 323850 CDS YP_001094868.1 127513671 4922910 3242067..3242948 1 NC_009092.1 PFAM: Peptidase M9A, collagenase C-terminal domain protein; KEGG: cps:CPS_1458 microbial collagenase; collagenase 3242948 4922910 Shew_2743 Shewanella loihica PV-4 collagenase YP_001094868.1 3242067 D 323850 CDS YP_001094869.1 127513672 4922911 complement(3242973..3243902) 1 NC_009092.1 PFAM: putative esterase; KEGG: pat:Patl_3925 putative esterase; putative esterase 3243902 4922911 Shew_2744 Shewanella loihica PV-4 putative esterase YP_001094869.1 3242973 R 323850 CDS YP_001094870.1 127513673 4922912 complement(3244646..3245404) 1 NC_009092.1 KEGG: csa:Csal_2788 hypothetical protein; hypothetical protein 3245404 4922912 Shew_2745 Shewanella loihica PV-4 hypothetical protein YP_001094870.1 3244646 R 323850 CDS YP_001094871.1 127513674 4922913 complement(3245455..3246135) 1 NC_009092.1 KEGG: rsp:RSP_3545 hypothetical protein; hypothetical protein 3246135 4922913 Shew_2746 Shewanella loihica PV-4 hypothetical protein YP_001094871.1 3245455 R 323850 CDS YP_001094872.1 127513675 4922914 complement(3247141..3248112) 1 NC_009092.1 TIGRFAM: phosphate binding protein; KEGG: sfr:Sfri_2766 phosphate binding protein; phosphate binding protein 3248112 4922914 Shew_2747 Shewanella loihica PV-4 phosphate binding protein YP_001094872.1 3247141 R 323850 CDS YP_001094873.1 127513676 4922915 complement(3248436..3249728) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 3249728 4922915 Shew_2748 Shewanella loihica PV-4 PAS/PAC sensor signal transduction histidine kinase YP_001094873.1 3248436 R 323850 CDS YP_001094874.1 127513677 4922916 complement(3250045..3250770) 1 NC_009092.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator 3250770 4922916 Shew_2749 Shewanella loihica PV-4 two component transcriptional regulator YP_001094874.1 3250045 R 323850 CDS YP_001094875.1 127513678 4922917 complement(3250922..3251872) 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: shm:Shewmr7_2778 porin, gram-negative type; porin 3251872 4922917 Shew_2750 Shewanella loihica PV-4 porin YP_001094875.1 3250922 R 323850 CDS YP_001094876.1 127513679 4922918 3252174..3253085 1 NC_009092.1 Required for efficient pilin antigenic variation; recombination associated protein 3253085 rdgC 4922918 rdgC Shewanella loihica PV-4 recombination associated protein YP_001094876.1 3252174 D 323850 CDS YP_001094877.1 127513680 4922919 complement(3253246..3255042) 1 NC_009092.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_2712 peptidase M61 domain protein; peptidase M61 domain-containing protein 3255042 4922919 Shew_2752 Shewanella loihica PV-4 peptidase M61 domain-containing protein YP_001094877.1 3253246 R 323850 CDS YP_001094878.1 127513681 4922920 3255170..3257326 1 NC_009092.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_2713 TPR repeat-containing protein; hypothetical protein 3257326 4922920 Shew_2753 Shewanella loihica PV-4 hypothetical protein YP_001094878.1 3255170 D 323850 CDS YP_001094879.1 127513682 4922749 3257518..3259074 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2782 diguanylate cyclase; diguanylate cyclase 3259074 4922749 Shew_2754 Shewanella loihica PV-4 diguanylate cyclase YP_001094879.1 3257518 D 323850 CDS YP_001094880.1 127513683 4922750 3259149..3260501 1 NC_009092.1 PFAM: conserved hypothetical protein 730; KEGG: shm:Shewmr7_2783 conserved hypothetical protein 730; hypothetical protein 3260501 4922750 Shew_2755 Shewanella loihica PV-4 hypothetical protein YP_001094880.1 3259149 D 323850 CDS YP_001094881.1 127513684 4922751 3260520..3261290 1 NC_009092.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3261290 xni 4922751 xni Shewanella loihica PV-4 exonuclease IX YP_001094881.1 3260520 D 323850 CDS YP_001094882.1 127513685 4922752 3261443..3261829 1 NC_009092.1 KEGG: shm:Shewmr7_2785 hypothetical protein; hypothetical protein 3261829 4922752 Shew_2757 Shewanella loihica PV-4 hypothetical protein YP_001094882.1 3261443 D 323850 CDS YP_001094883.1 127513686 4922753 complement(3261853..3262335) 1 NC_009092.1 KEGG: gvi:gll2461 hypothetical protein; hypothetical protein 3262335 4922753 Shew_2758 Shewanella loihica PV-4 hypothetical protein YP_001094883.1 3261853 R 323850 CDS YP_001094884.1 127513687 4922754 complement(3262457..3265270) 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: shm:Shewmr7_2790 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 3265270 4922754 Shew_2759 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001094884.1 3262457 R 323850 CDS YP_001094885.1 127513688 4922755 3265570..3266577 1 NC_009092.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3266577 4922755 Shew_2760 Shewanella loihica PV-4 isocitrate dehydrogenase YP_001094885.1 3265570 D 323850 CDS YP_001094886.1 127513689 4922756 complement(3266754..3267845) 1 NC_009092.1 KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 3267845 4922756 Shew_2761 Shewanella loihica PV-4 putative RNA 2'-O-ribose methyltransferase YP_001094886.1 3266754 R 323850 CDS YP_001094887.1 127513690 4922757 complement(3267937..3268326) 1 NC_009092.1 PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein 3268326 4922757 Shew_2762 Shewanella loihica PV-4 hypothetical protein YP_001094887.1 3267937 R 323850 CDS YP_001094888.1 127513691 4922758 complement(3268319..3269041) 1 NC_009092.1 PFAM: dienelactone hydrolase; KEGG: shm:Shewmr7_2794 hypothetical protein; dienelactone hydrolase 3269041 4922758 Shew_2763 Shewanella loihica PV-4 dienelactone hydrolase YP_001094888.1 3268319 R 323850 CDS YP_001094889.1 127513692 4922759 complement(3269102..3270013) 1 NC_009092.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3270013 4922759 Shew_2764 Shewanella loihica PV-4 DNA-binding transcriptional activator GcvA YP_001094889.1 3269102 R 323850 CDS YP_001094890.1 127513693 4922760 3270196..3270426 1 NC_009092.1 KEGG: sfr:Sfri_2784 hypothetical protein; hypothetical protein 3270426 4922760 Shew_2765 Shewanella loihica PV-4 hypothetical protein YP_001094890.1 3270196 D 323850 CDS YP_001094891.1 127513694 4922761 complement(3270798..3272255) 1 NC_009092.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 3272255 4922761 Shew_2766 Shewanella loihica PV-4 thiamine biosynthesis protein ThiI YP_001094891.1 3270798 R 323850 CDS YP_001094892.1 127513695 4922762 complement(3272510..3273454) 1 NC_009092.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 3273454 motB 4922762 motB Shewanella loihica PV-4 flagellar motor protein MotB YP_001094892.1 3272510 R 323850 CDS YP_001094893.1 127513696 4922732 complement(3273459..3274226) 1 NC_009092.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 3274226 4922732 Shew_2768 Shewanella loihica PV-4 flagellar motor protein PomA YP_001094893.1 3273459 R 323850 CDS YP_001094894.1 127513697 4922733 3274622..3274861 1 NC_009092.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: shm:Shewmr7_2802 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3274861 4922733 Shew_2769 Shewanella loihica PV-4 exodeoxyribonuclease VII small subunit YP_001094894.1 3274622 D 323850 CDS YP_001094895.1 127513698 4922734 3274862..3275743 1 NC_009092.1 PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase 3275743 4922734 Shew_2770 Shewanella loihica PV-4 polyprenyl synthetase YP_001094895.1 3274862 D 323850 CDS YP_001094896.1 127513699 4922735 3275766..3277634 1 NC_009092.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3277634 4922735 Shew_2771 Shewanella loihica PV-4 1-deoxy-D-xylulose-5-phosphate synthase YP_001094896.1 3275766 D 323850 CDS YP_001094897.1 127513700 4922736 complement(3277720..3278337) 1 NC_009092.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3278337 4922736 Shew_2772 Shewanella loihica PV-4 heat shock protein GrpE YP_001094897.1 3277720 R 323850 CDS YP_001094898.1 127513701 4922737 3278438..3279316 1 NC_009092.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3279316 ppnK 4922737 ppnK Shewanella loihica PV-4 inorganic polyphosphate/ATP-NAD kinase YP_001094898.1 3278438 D 323850 CDS YP_001094899.1 127513702 4922738 complement(3279362..3280426) 1 NC_009092.1 TIGRFAM: TonB family protein; KEGG: son:SO4043 TonB domain protein; TonB family protein 3280426 4922738 Shew_2774 Shewanella loihica PV-4 TonB family protein YP_001094899.1 3279362 R 323850 CDS YP_001094900.1 127513703 4922739 complement(3280656..3282026) 1 NC_009092.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; MATE efflux family protein 3282026 4922739 Shew_2775 Shewanella loihica PV-4 MATE efflux family protein YP_001094900.1 3280656 R 323850 CDS YP_001094901.1 127513704 4922740 complement(3282139..3283212) 1 NC_009092.1 PFAM: cobalamin synthesis protein, P47K; KEGG: shm:Shewmr7_2829 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K 3283212 4922740 Shew_2776 Shewanella loihica PV-4 cobalamin synthesis protein, P47K YP_001094901.1 3282139 R 323850 CDS YP_001094902.1 127513705 4922741 complement(3283298..3284653) 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_2752 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3284653 4922741 Shew_2777 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001094902.1 3283298 R 323850 CDS YP_001094903.1 127513706 4922742 complement(3284738..3287770) 1 NC_009092.1 KEGG: she:Shewmr4_2753 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 3287770 4922742 Shew_2778 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001094903.1 3284738 R 323850 CDS YP_001094904.1 127513707 4922743 3288098..3288907 1 NC_009092.1 KEGG: sfr:Sfri_1026 conserved hypothetical amino acid ABC transporter; amino acid ABC transporter 3288907 4922743 Shew_2779 Shewanella loihica PV-4 amino acid ABC transporter YP_001094904.1 3288098 D 323850 CDS YP_001094905.1 127513708 4922744 3288994..3289434 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1139 thioesterase superfamily protein; thioesterase superfamily protein 3289434 4922744 Shew_2780 Shewanella loihica PV-4 thioesterase superfamily protein YP_001094905.1 3288994 D 323850 CDS YP_001094906.1 127513709 4922745 complement(3289458..3290954) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_1066 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3290954 4922745 Shew_2781 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001094906.1 3289458 R 323850 CDS YP_001094907.1 127513710 4922746 complement(3291026..3291868) 1 NC_009092.1 PFAM: HDOD; KEGG: shm:Shewmr7_1137 putative signal transduction protein; putative signal transduction protein 3291868 4922746 Shew_2782 Shewanella loihica PV-4 putative signal transduction protein YP_001094907.1 3291026 R 323850 CDS YP_001094908.1 127513711 4922717 3292157..3293518 1 NC_009092.1 PFAM: peptidase U32; KEGG: shm:Shewmr7_1136 peptidase U32; peptidase U32 3293518 4922717 Shew_2783 Shewanella loihica PV-4 peptidase U32 YP_001094908.1 3292157 D 323850 CDS YP_001094909.1 127513712 4922718 3294030..3295358 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: ppr:PBPRB1965 putative PAP2 family protein; PA-phosphatase-like phosphoesterase 3295358 4922718 Shew_2784 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001094909.1 3294030 D 323850 CDS YP_001094910.1 127513713 4922719 3295591..3295848 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_1135 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3295848 4922719 Shew_2785 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001094910.1 3295591 D 323850 CDS YP_001094911.1 127513714 4922720 complement(3295949..3296461) 1 NC_009092.1 PFAM: Sterol-binding domain protein; KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein 3296461 4922720 Shew_2786 Shewanella loihica PV-4 sterol-binding domain-containing protein YP_001094911.1 3295949 R 323850 CDS YP_001094912.1 127513715 4922721 3296658..3297659 1 NC_009092.1 PFAM: peptidase U32; KEGG: shm:Shewmr7_1133 peptidase U32; peptidase U32 3297659 4922721 Shew_2787 Shewanella loihica PV-4 peptidase U32 YP_001094912.1 3296658 D 323850 CDS YP_001094913.1 127513716 4922722 3297692..3298537 1 NC_009092.1 PFAM: peptidase U32; KEGG: she:Shewmr4_1060 peptidase U32; peptidase U32 3298537 4922722 Shew_2788 Shewanella loihica PV-4 peptidase U32 YP_001094913.1 3297692 D 323850 CDS YP_001094914.1 127513717 4922723 complement(3298623..3299348) 1 NC_009092.1 KEGG: she:Shewmr4_1059 hypothetical protein; hypothetical protein 3299348 4922723 Shew_2789 Shewanella loihica PV-4 hypothetical protein YP_001094914.1 3298623 R 323850 CDS YP_001094915.1 127513718 4922724 3299791..3301146 1 NC_009092.1 PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1058 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 3301146 4922724 Shew_2790 Shewanella loihica PV-4 nucleoside recognition domain-containing protein YP_001094915.1 3299791 D 323850 CDS YP_001094916.1 127513719 4922725 3301398..3305078 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: son:SO0341 sensory box protein; PAS/PAC sensor signal transduction histidine kinase 3305078 4922725 Shew_2791 Shewanella loihica PV-4 PAS/PAC sensor signal transduction histidine kinase YP_001094916.1 3301398 D 323850 CDS YP_001094917.1 127513720 4922726 3305141..3306958 1 NC_009092.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase 3306958 4922726 Shew_2792 Shewanella loihica PV-4 phospholipid/glycerol acyltransferase YP_001094917.1 3305141 D 323850 CDS YP_001094918.1 127513721 4922727 complement(3307200..3308333) 1 NC_009092.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 3308333 4922727 Shew_2793 Shewanella loihica PV-4 succinyl-diaminopimelate desuccinylase YP_001094918.1 3307200 R 323850 CDS YP_001094919.1 127513722 4922728 3308689..3309117 1 NC_009092.1 PFAM: CBS domain containing protein; KEGG: she:Shewmr4_1055 CBS domain containing protein; hypothetical protein 3309117 4922728 Shew_2794 Shewanella loihica PV-4 hypothetical protein YP_001094919.1 3308689 D 323850 CDS YP_001094920.1 127513723 4922729 complement(3309263..3310621) 1 NC_009092.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_3048 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 3310621 4922729 Shew_2795 Shewanella loihica PV-4 xanthine/uracil/vitamin C permease YP_001094920.1 3309263 R 323850 CDS YP_001094921.1 127513724 4922730 3311100..3311300 1 NC_009092.1 PFAM: periplasmic nitrate reductase NapE; KEGG: sfr:Sfri_1996 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 3311300 4922730 Shew_2796 Shewanella loihica PV-4 periplasmic nitrate reductase NapE YP_001094921.1 3311100 D 323850 CDS YP_001094922.1 127513725 4922531 3311331..3312509 1 NC_009092.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sfr:Sfri_1995 trimethylamine-N-oxide reductase C-type cytochrome TorC; trimethylamine-N-oxide reductase c-type cytochrome TorC 3312509 4922531 Shew_2797 Shewanella loihica PV-4 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_001094922.1 3311331 D 323850 CDS YP_001094923.1 127513726 4922532 3312522..3315008 1 NC_009092.1 TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; trimethylamine-N-oxide reductase TorA 3315008 4922532 Shew_2798 Shewanella loihica PV-4 trimethylamine-N-oxide reductase TorA YP_001094923.1 3312522 D 323850 CDS YP_001094924.1 127513727 4922533 3315038..3315673 1 NC_009092.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 3315673 torD 4922533 torD Shewanella loihica PV-4 chaperone protein TorD YP_001094924.1 3315038 D 323850 CDS YP_001094925.1 127513728 4922534 complement(3315685..3316911) 1 NC_009092.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_1161 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3316911 4922534 Shew_2800 Shewanella loihica PV-4 DEAD/DEAH box helicase YP_001094925.1 3315685 R 323850 CDS YP_001094926.1 127513729 4922535 complement(3317080..3320205) 1 NC_009092.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 3320205 4922535 Shew_2801 Shewanella loihica PV-4 multi-sensor hybrid histidine kinase YP_001094926.1 3317080 R 323850 CDS YP_001094927.1 127513730 4922536 3320273..3321436 1 NC_009092.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 3321436 4922536 Shew_2802 Shewanella loihica PV-4 TMAO reductase system periplasmic protein TorT YP_001094927.1 3320273 D 323850 CDS YP_001094928.1 127513731 4922537 complement(3321446..3322171) 1 NC_009092.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 3322171 4922537 Shew_2803 Shewanella loihica PV-4 DNA-binding transcriptional regulator TorR YP_001094928.1 3321446 R 323850 CDS YP_001094929.1 127513732 4922538 3322456..3322824 1 NC_009092.1 PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1046 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3322824 4922538 Shew_2804 Shewanella loihica PV-4 type IV pilus assembly PilZ YP_001094929.1 3322456 D 323850 CDS YP_001094930.1 127513733 4922539 3323306..3324391 1 NC_009092.1 PFAM: Choloylglycine hydrolase; KEGG: bba:Bd0665 choloylglycine hydrolase; choloylglycine hydrolase 3324391 4922539 Shew_2805 Shewanella loihica PV-4 choloylglycine hydrolase YP_001094930.1 3323306 D 323850 CDS YP_001094931.1 127513734 4922540 complement(3324475..3324975) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2181 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3324975 4922540 Shew_2806 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001094931.1 3324475 R 323850 CDS YP_001094932.1 127513735 4922541 complement(3325002..3326375) 1 NC_009092.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3326375 4922541 Shew_2807 Shewanella loihica PV-4 DNA repair protein RadA YP_001094932.1 3325002 R 323850 CDS YP_001094933.1 127513736 4922542 3326705..3329095 1 NC_009092.1 PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3329095 4922542 Shew_2808 Shewanella loihica PV-4 type IV pilus assembly PilZ YP_001094933.1 3326705 D 323850 CDS YP_001094934.1 127513737 4922543 complement(3329105..3330031) 1 NC_009092.1 KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase 3330031 4922543 Shew_2809 Shewanella loihica PV-4 alpha/beta hydrolase YP_001094934.1 3329105 R 323850 CDS YP_001094935.1 127513738 4922544 complement(3330294..3331277) 1 NC_009092.1 KEGG: she:Shewmr4_1042 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 3331277 4922544 Shew_2810 Shewanella loihica PV-4 phosphoserine phosphatase SerB YP_001094935.1 3330294 R 323850 CDS YP_001094936.1 127513739 4922545 3331320..3332054 1 NC_009092.1 KEGG: shm:Shewmr7_1106 membrane protein; membrane protein 3332054 4922545 Shew_2811 Shewanella loihica PV-4 membrane protein YP_001094936.1 3331320 D 323850 CDS YP_001094937.1 127513740 4922482 complement(3332289..3332999) 1 NC_009092.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 3332999 deoD 4922482 deoD Shewanella loihica PV-4 purine nucleoside phosphorylase YP_001094937.1 3332289 R 323850 CDS YP_001094938.1 127513741 4922483 complement(3333109..3334326) 1 NC_009092.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 3334326 4922483 Shew_2813 Shewanella loihica PV-4 phosphopentomutase YP_001094938.1 3333109 R 323850 CDS YP_001094939.1 127513742 4922484 complement(3334338..3335669) 1 NC_009092.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 3335669 deoA 4922484 deoA Shewanella loihica PV-4 thymidine phosphorylase YP_001094939.1 3334338 R 323850 CDS YP_001094940.1 127513743 4922485 complement(3335827..3336600) 1 NC_009092.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 3336600 4922485 Shew_2815 Shewanella loihica PV-4 deoxyribose-phosphate aldolase YP_001094940.1 3335827 R 323850 CDS YP_001094941.1 127513744 4922486 complement(3337052..3337885) 1 NC_009092.1 PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: shm:Shewmr7_1101 nucleoside-specific channel-forming protein, Tsx; nucleoside-specific channel-forming protein, Tsx 3337885 4922486 Shew_2816 Shewanella loihica PV-4 nucleoside-specific channel-forming protein, Tsx YP_001094941.1 3337052 R 323850 CDS YP_001094942.1 127513745 4922487 complement(3338227..3339486) 1 NC_009092.1 TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shm:Shewmr7_1100 nucleoside transporter; nucleoside transporter 3339486 4922487 Shew_2817 Shewanella loihica PV-4 nucleoside transporter YP_001094942.1 3338227 R 323850 CDS YP_001094943.1 127513746 4922488 complement(3339664..3340494) 1 NC_009092.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 3340494 4922488 Shew_2818 Shewanella loihica PV-4 TatD-related deoxyribonuclease YP_001094943.1 3339664 R 323850 CDS YP_001094944.1 127513747 4922489 complement(3340475..3340765) 1 NC_009092.1 KEGG: sfr:Sfri_0998 hypothetical protein; hypothetical protein 3340765 4922489 Shew_2819 Shewanella loihica PV-4 hypothetical protein YP_001094944.1 3340475 R 323850 CDS YP_001094945.1 127513748 4922490 complement(3341022..3342602) 1 NC_009092.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3342602 prfC 4922490 prfC Shewanella loihica PV-4 peptide chain release factor 3 YP_001094945.1 3341022 R 323850 CDS YP_001094946.1 127513749 4922491 complement(3342798..3343688) 1 NC_009092.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3343688 4922491 Shew_2821 Shewanella loihica PV-4 lipoprotein NlpI YP_001094946.1 3342798 R 323850 CDS YP_001094947.1 127513750 4922492 complement(3343826..3345928) 1 NC_009092.1 KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3345928 4922492 Shew_2822 Shewanella loihica PV-4 polynucleotide phosphorylase/polyadenylase YP_001094947.1 3343826 R 323850 CDS YP_001094948.1 127513751 4922493 3346124..3348157 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1095 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3348157 4922493 Shew_2823 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001094948.1 3346124 D 323850 CDS YP_001094949.1 127513752 4922494 complement(3348265..3348534) 1 NC_009092.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3348534 rpsO 4922494 rpsO Shewanella loihica PV-4 30S ribosomal protein S15 YP_001094949.1 3348265 R 323850 CDS YP_001094950.1 127513753 4922495 complement(3348630..3349577) 1 NC_009092.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3349577 truB 4922495 truB Shewanella loihica PV-4 tRNA pseudouridine synthase B YP_001094950.1 3348630 R 323850 CDS YP_001094951.1 127513754 4922333 complement(3349577..3349999) 1 NC_009092.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3349999 rbfA 4922333 rbfA Shewanella loihica PV-4 ribosome-binding factor A YP_001094951.1 3349577 R 323850 CDS YP_001094952.1 127513755 4922334 complement(3350124..3352781) 1 NC_009092.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3352781 infB 4922334 infB Shewanella loihica PV-4 translation initiation factor IF-2 YP_001094952.1 3350124 R 323850 CDS YP_001094953.1 127513756 4922335 complement(3352808..3354307) 1 NC_009092.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3354307 nusA 4922335 nusA Shewanella loihica PV-4 transcription elongation factor NusA YP_001094953.1 3352808 R 323850 CDS YP_001094954.1 127513757 4922336 complement(3354335..3354820) 1 NC_009092.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3354820 4922336 Shew_2829 Shewanella loihica PV-4 hypothetical protein YP_001094954.1 3354335 R 323850 CDS YP_001094955.1 127513758 4920682 complement(3355338..3355682) 1 NC_009092.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 3355682 secG 4920682 secG Shewanella loihica PV-4 preprotein translocase subunit SecG YP_001094955.1 3355338 R 323850 CDS YP_001094956.1 127513759 4922338 complement(3355684..3356466) 1 NC_009092.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3356466 4922338 Shew_2831 Shewanella loihica PV-4 triosephosphate isomerase YP_001094956.1 3355684 R 323850 CDS YP_001094957.1 127513760 4922339 complement(3356635..3357966) 1 NC_009092.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3357966 glmM 4922339 glmM Shewanella loihica PV-4 phosphoglucosamine mutase YP_001094957.1 3356635 R 323850 CDS YP_001094958.1 127513761 4922340 complement(3358047..3358895) 1 NC_009092.1 KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 3358895 4922340 Shew_2833 Shewanella loihica PV-4 dihydropteroate synthase YP_001094958.1 3358047 R 323850 CDS YP_001094959.1 127513762 4922341 complement(3358989..3360956) 1 NC_009092.1 KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 3360956 4922341 Shew_2834 Shewanella loihica PV-4 ATP-dependent metalloprotease FtsH YP_001094959.1 3358989 R 323850 CDS YP_001094960.1 127513763 4922342 complement(3361002..3361631) 1 NC_009092.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 3361631 rrmJ 4922342 rrmJ Shewanella loihica PV-4 23S rRNA methyltransferase J YP_001094960.1 3361002 R 323850 CDS YP_001094961.1 127513764 4922343 3361714..3362022 1 NC_009092.1 PFAM: protein of unknown function UPF0044; KEGG: shm:Shewmr7_1082 protein of unknown function UPF0044; hypothetical protein 3362022 4922343 Shew_2836 Shewanella loihica PV-4 hypothetical protein YP_001094961.1 3361714 D 323850 CDS YP_001094962.1 127513765 4922344 complement(3362099..3362575) 1 NC_009092.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sfr:Sfri_0977 transcription elongation factor GreA; transcription elongation factor GreA 3362575 4922344 Shew_2837 Shewanella loihica PV-4 transcription elongation factor GreA YP_001094962.1 3362099 R 323850 CDS YP_001094963.1 127513766 4922345 complement(3362872..3366093) 1 NC_009092.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3366093 carB 4922345 carB Shewanella loihica PV-4 carbamoyl phosphate synthase large subunit YP_001094963.1 3362872 R 323850 CDS YP_001094964.1 127513767 4922346 complement(3366114..3367286) 1 NC_009092.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3367286 4922346 Shew_2839 Shewanella loihica PV-4 carbamoyl phosphate synthase small subunit YP_001094964.1 3366114 R 323850 CDS YP_001094965.1 127513768 4922347 complement(3367447..3368262) 1 NC_009092.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3368262 4922347 Shew_2840 Shewanella loihica PV-4 dihydrodipicolinate reductase YP_001094965.1 3367447 R 323850 CDS YP_001094966.1 127513769 4922271 complement(3368359..3368976) 1 NC_009092.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_1001 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3368976 4922271 Shew_2841 Shewanella loihica PV-4 peptidylprolyl isomerase, FKBP-type YP_001094966.1 3368359 R 323850 CDS YP_001094967.1 127513770 4922272 complement(3369057..3369845) 1 NC_009092.1 PFAM: peptidase M48, Ste24p; KEGG: shm:Shewmr7_1000 peptidase M48, Ste24p; peptidase M48, Ste24p 3369845 4922272 Shew_2842 Shewanella loihica PV-4 peptidase M48, Ste24p YP_001094967.1 3369057 R 323850 CDS YP_001094968.1 127513771 4922273 complement(3370122..3371252) 1 NC_009092.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3371252 4922273 Shew_2843 Shewanella loihica PV-4 chaperone protein DnaJ YP_001094968.1 3370122 R 323850 CDS YP_001094969.1 127513772 4922274 complement(3371401..3373314) 1 NC_009092.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3373314 dnaK 4922274 dnaK Shewanella loihica PV-4 molecular chaperone DnaK YP_001094969.1 3371401 R 323850 CDS YP_001094970.1 127513773 4922275 3373622..3374548 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_0956 protein of unknown function DUF6, transmembrane; hypothetical protein 3374548 4922275 Shew_2845 Shewanella loihica PV-4 hypothetical protein YP_001094970.1 3373622 D 323850 CDS YP_001094971.1 127513774 4922276 complement(3374645..3375346) 1 NC_009092.1 KEGG: ilo:IL0884 secreted protein containing internal repeats; hypothetical protein 3375346 4922276 Shew_2846 Shewanella loihica PV-4 hypothetical protein YP_001094971.1 3374645 R 323850 CDS YP_001094972.1 127513775 4922277 complement(3375574..3376863) 1 NC_009092.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3376863 proA 4922277 proA Shewanella loihica PV-4 gamma-glutamyl phosphate reductase YP_001094972.1 3375574 R 323850 CDS YP_001094973.1 127513776 4922278 complement(3376898..3378022) 1 NC_009092.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3378022 4922278 Shew_2848 Shewanella loihica PV-4 gamma-glutamyl kinase YP_001094973.1 3376898 R 323850 CDS YP_001094974.1 127513777 4922279 complement(3378244..3379533) 1 NC_009092.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_0989 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 3379533 4922279 Shew_2849 Shewanella loihica PV-4 xanthine/uracil/vitamin C permease YP_001094974.1 3378244 R 323850 CDS YP_001094975.1 127513778 4922280 complement(3379946..3380050) 1 NC_009092.1 hypothetical protein 3380050 4922280 Shew_2850 Shewanella loihica PV-4 hypothetical protein YP_001094975.1 3379946 R 323850 CDS YP_001094976.1 127513779 4922281 complement(3380419..3381951) 1 NC_009092.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: she:Shewmr4_0949 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17, leucyl aminopeptidase domain-containing protein 3381951 4922281 Shew_2851 Shewanella loihica PV-4 peptidase M17, leucyl aminopeptidase domain-containing protein YP_001094976.1 3380419 R 323850 CDS YP_001094977.1 127513780 4922282 3382375..3383835 1 NC_009092.1 KEGG: shm:Shewmr7_0986 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3383835 4922282 Shew_2852 Shewanella loihica PV-4 aminoacyl-histidine dipeptidase YP_001094977.1 3382375 D 323850 CDS YP_001094978.1 127513781 4922283 complement(3384389..3384748) 1 NC_009092.1 hypothetical protein 3384748 4922283 Shew_2853 Shewanella loihica PV-4 hypothetical protein YP_001094978.1 3384389 R 323850 CDS YP_001094979.1 127513782 4922284 complement(3384775..3385272) 1 NC_009092.1 KEGG: vpa:VP1817 hypothetical protein; hypothetical protein 3385272 4922284 Shew_2854 Shewanella loihica PV-4 hypothetical protein YP_001094979.1 3384775 R 323850 CDS YP_001094980.1 127513783 4922234 complement(3385397..3385858) 1 NC_009092.1 KEGG: mes:Meso_1882 hypothetical protein; hypothetical protein 3385858 4922234 Shew_2855 Shewanella loihica PV-4 hypothetical protein YP_001094980.1 3385397 R 323850 CDS YP_001094981.1 127513784 4922235 complement(3386915..3387568) 1 NC_009092.1 PFAM: ThiJ/PfpI domain protein; KEGG: vvu:VV12405 putative intracellular protease/amidase; ThiJ/PfpI domain-containing protein 3387568 4922235 Shew_2856 Shewanella loihica PV-4 ThiJ/PfpI domain-containing protein YP_001094981.1 3386915 R 323850 CDS YP_001094982.1 127513785 4922236 complement(3388466..3389362) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bcn:Bcen_5015 transcriptional regulator, LysR family; LysR family transcriptional regulator 3389362 4922236 Shew_2857 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001094982.1 3388466 R 323850 CDS YP_001094983.1 127513786 4922237 3389550..3390734 1 NC_009092.1 KEGG: bur:Bcep18194_B3098 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 3390734 4922237 Shew_2858 Shewanella loihica PV-4 acetyl-CoA acetyltransferase YP_001094983.1 3389550 D 323850 CDS YP_001094984.1 127513787 4922238 3390755..3391429 1 NC_009092.1 PFAM: Phosphoglycerate mutase; KEGG: abo:ABO_0956 phosphoglycerate mutase, putative; phosphoglycerate mutase 3391429 4922238 Shew_2859 Shewanella loihica PV-4 phosphoglycerate mutase YP_001094984.1 3390755 D 323850 CDS YP_001094985.1 127513788 4922239 3391405..3392703 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sfr:Sfri_2069 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3392703 4922239 Shew_2860 Shewanella loihica PV-4 acyl-CoA dehydrogenase domain-containing protein YP_001094985.1 3391405 D 323850 CDS YP_001094986.1 127513789 4922240 3392700..3393737 1 NC_009092.1 PFAM: aminoglycoside phosphotransferase; KEGG: abo:ABO_0958 hypothetical protein; aminoglycoside phosphotransferase 3393737 4922240 Shew_2861 Shewanella loihica PV-4 aminoglycoside phosphotransferase YP_001094986.1 3392700 D 323850 CDS YP_001094987.1 127513790 4922241 3393742..3394509 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_C6406 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3394509 4922241 Shew_2862 Shewanella loihica PV-4 short chain dehydrogenase YP_001094987.1 3393742 D 323850 CDS YP_001094988.1 127513791 4922242 3394524..3395270 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3395270 4922242 Shew_2863 Shewanella loihica PV-4 short-chain dehydrogenase/reductase SDR YP_001094988.1 3394524 D 323850 CDS YP_001094989.1 127513792 4922243 3395303..3397429 1 NC_009092.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pat:Patl_1916 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 3397429 4922243 Shew_2864 Shewanella loihica PV-4 3-hydroxyacyl-CoA dehydrogenase YP_001094989.1 3395303 D 323850 CDS YP_001094990.1 127513793 4922244 complement(3397601..3398365) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: fal:FRAAL1231 putative TetR-family transcriptional regulator; TetR family transcriptional regulator 3398365 4922244 Shew_2865 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001094990.1 3397601 R 323850 CDS YP_001094991.1 127513794 4922245 3398900..3400609 1 NC_009092.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3400609 4922245 Shew_2866 Shewanella loihica PV-4 acyl-CoA synthetase YP_001094991.1 3398900 D 323850 CDS YP_001094992.1 127513795 4922246 3400606..3403890 1 NC_009092.1 PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pae:PA1400 pyruvate carboxylase subunit A; pyruvate carboxylase, propionyl-CoA carboxylase 3403890 4922246 Shew_2867 Shewanella loihica PV-4 pyruvate carboxylase, propionyl-CoA carboxylase YP_001094992.1 3400606 D 323850 CDS YP_001094993.1 127513796 4922247 complement(3404415..3406223) 1 NC_009092.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5004 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3406223 4922247 Shew_2868 Shewanella loihica PV-4 acyl-CoA dehydrogenase domain-containing protein YP_001094993.1 3404415 R 323850 CDS YP_001094994.1 127513797 4921841 complement(3406441..3408375) 1 NC_009092.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: cps:CPS_3343 putative acylase; peptidase S15 3408375 4921841 Shew_2869 Shewanella loihica PV-4 peptidase S15 YP_001094994.1 3406441 R 323850 CDS YP_001094995.1 127513798 4921842 complement(3408585..3411158) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3344 TonB-dependent receptor; TonB-dependent receptor 3411158 4921842 Shew_2870 Shewanella loihica PV-4 TonB-dependent receptor YP_001094995.1 3408585 R 323850 CDS YP_001094996.1 127513799 4921843 complement(3411830..3412909) 1 NC_009092.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3412909 4921843 Shew_2871 Shewanella loihica PV-4 DNA polymerase IV YP_001094996.1 3411830 R 323850 CDS YP_001094997.1 127513800 4921844 complement(3413077..3413544) 1 NC_009092.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: sdn:Sden_0991 bacterioferritin; bacterioferritin 3413544 4921844 Shew_2872 Shewanella loihica PV-4 bacterioferritin YP_001094997.1 3413077 R 323850 CDS YP_001094998.1 127513801 4921845 complement(3413555..3414028) 1 NC_009092.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: sdn:Sden_0990 bacterioferritin; bacterioferritin 3414028 4921845 Shew_2873 Shewanella loihica PV-4 bacterioferritin YP_001094998.1 3413555 R 323850 CDS YP_001094999.1 127513802 4921846 complement(3414314..3414538) 1 NC_009092.1 PFAM: protein of unknown function DUF539; KEGG: shm:Shewmr7_0981 protein of unknown function DUF539; hypothetical protein 3414538 4921846 Shew_2874 Shewanella loihica PV-4 hypothetical protein YP_001094999.1 3414314 R 323850 CDS YP_001095000.1 127513803 4921847 complement(3414706..3415722) 1 NC_009092.1 PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_0942 ApbE family lipoprotein; ApbE family lipoprotein 3415722 4921847 Shew_2875 Shewanella loihica PV-4 ApbE family lipoprotein YP_001095000.1 3414706 R 323850 CDS YP_001095001.1 127513804 4921848 complement(3415828..3417075) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 3417075 4921848 Shew_2876 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit F YP_001095001.1 3415828 R 323850 CDS YP_001095002.1 127513805 4921849 complement(3417124..3417732) 1 NC_009092.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 3417732 4921849 Shew_2877 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit E YP_001095002.1 3417124 R 323850 CDS YP_001095003.1 127513806 4921850 complement(3417738..3418370) 1 NC_009092.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 3418370 4921850 Shew_2878 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit D YP_001095003.1 3417738 R 323850 CDS YP_001095004.1 127513807 4921851 complement(3418370..3419164) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 3419164 4921851 Shew_2879 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit C YP_001095004.1 3418370 R 323850 CDS YP_001095005.1 127513808 4921852 complement(3419157..3420356) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 3420356 4921852 Shew_2880 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit B YP_001095005.1 3419157 R 323850 CDS YP_001095006.1 127513809 4921853 complement(3420356..3421690) 1 NC_009092.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 3421690 4921853 Shew_2881 Shewanella loihica PV-4 Na(+)-translocating NADH-quinone reductase subunit A YP_001095006.1 3420356 R 323850 CDS YP_001095007.1 127513810 4921854 complement(3422269..3422778) 1 NC_009092.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3422778 4921854 Shew_2882 Shewanella loihica PV-4 S-ribosylhomocysteinase YP_001095007.1 3422269 R 323850 CDS YP_001095008.1 127513811 4921855 complement(3423038..3423337) 1 NC_009092.1 PFAM: BolA family protein; KEGG: she:Shewmr4_0932 BolA family protein; BolA family protein 3423337 4921855 Shew_2883 Shewanella loihica PV-4 BolA family protein YP_001095008.1 3423038 R 323850 CDS YP_001095009.1 127513812 4921813 complement(3423463..3423966) 1 NC_009092.1 KEGG: sfr:Sfri_3629 glycine cleavage system regulatory protein-like protein; glycine cleavage system regulatory protein-like protein 3423966 4921813 Shew_2884 Shewanella loihica PV-4 glycine cleavage system regulatory protein-like protein YP_001095009.1 3423463 R 323850 CDS YP_001095010.1 127513813 4921814 complement(3424096..3424743) 1 NC_009092.1 KEGG: shm:Shewmr7_0969 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 3424743 4921814 Shew_2885 Shewanella loihica PV-4 2OG-Fe(II) oxygenase YP_001095010.1 3424096 R 323850 CDS YP_001095011.1 127513814 4921815 3424854..3426059 1 NC_009092.1 PFAM: methyltransferase small; KEGG: shm:Shewmr7_0968 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3426059 4921815 Shew_2886 Shewanella loihica PV-4 rRNA (guanine-N(2)-)-methyltransferase YP_001095011.1 3424854 D 323850 CDS YP_001095012.1 127513815 4921816 complement(3426234..3427148) 1 NC_009092.1 KEGG: she:Shewmr4_3149 sterol desaturase family protein; sterol desaturase family protein 3427148 4921816 Shew_2887 Shewanella loihica PV-4 sterol desaturase family protein YP_001095012.1 3426234 R 323850 CDS YP_001095013.1 127513816 4921817 complement(3427212..3428264) 1 NC_009092.1 KEGG: shm:Shewmr7_0817 hypothetical protein; hypothetical protein 3428264 4921817 Shew_2888 Shewanella loihica PV-4 hypothetical protein YP_001095013.1 3427212 R 323850 CDS YP_001095014.1 127513817 4921818 3428466..3429032 1 NC_009092.1 PFAM: uncharacterized lipoprotein; KEGG: shm:Shewmr7_0815 uncharacterized lipoprotein; hypothetical protein 3429032 4921818 Shew_2889 Shewanella loihica PV-4 hypothetical protein YP_001095014.1 3428466 D 323850 CDS YP_001095015.1 127513818 4921819 3429052..3429636 1 NC_009092.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_0814 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3429636 4921819 Shew_2890 Shewanella loihica PV-4 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001095015.1 3429052 D 323850 CDS YP_001095016.1 127513819 4921820 3429823..3430155 1 NC_009092.1 KEGG: son:SO3813 hypothetical protein; hypothetical protein 3430155 4921820 Shew_2891 Shewanella loihica PV-4 hypothetical protein YP_001095016.1 3429823 D 323850 CDS YP_001095017.1 127513820 4921821 3430301..3431719 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_0812 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3431719 4921821 Shew_2892 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001095017.1 3430301 D 323850 CDS YP_001095018.1 127513821 4921822 complement(3431832..3432317) 1 NC_009092.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 3432317 4921822 Shew_2893 Shewanella loihica PV-4 putative nucleotide-binding protein YP_001095018.1 3431832 R 323850 CDS YP_001095019.1 127513822 4921823 3432475..3432855 1 NC_009092.1 PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein; VanZ family protein 3432855 4921823 Shew_2894 Shewanella loihica PV-4 VanZ family protein YP_001095019.1 3432475 D 323850 CDS YP_001095020.1 127513823 4921824 3432852..3433772 1 NC_009092.1 KEGG: she:Shewmr4_3158 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3433772 4921824 Shew_2895 Shewanella loihica PV-4 2-dehydropantoate 2-reductase YP_001095020.1 3432852 D 323850 CDS YP_001095021.1 127513824 4921825 3433919..3435430 1 NC_009092.1 PFAM: sodium:neurotransmitter symporter; KEGG: ppr:PBPRA1510 putative sodium-dependent transporter; sodium:neurotransmitter symporter 3435430 4921825 Shew_2896 Shewanella loihica PV-4 sodium:neurotransmitter symporter YP_001095021.1 3433919 D 323850 CDS YP_001095022.1 127513825 4921826 complement(3435587..3436471) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0041 transcriptional regulator, LysR family; LysR family transcriptional regulator 3436471 4921826 Shew_2897 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095022.1 3435587 R 323850 CDS YP_001095023.1 127513826 4921359 3436624..3436983 1 NC_009092.1 PFAM: protein of unknown function DUF413; KEGG: vpa:VPA0040 hypothetical protein; hypothetical protein 3436983 4921359 Shew_2898 Shewanella loihica PV-4 hypothetical protein YP_001095023.1 3436624 D 323850 CDS YP_001095024.1 127513827 4921360 3436987..3438021 1 NC_009092.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3438021 4921360 Shew_2899 Shewanella loihica PV-4 glutathione synthetase YP_001095024.1 3436987 D 323850 CDS YP_001095025.1 127513828 4921361 3438008..3439999 1 NC_009092.1 PFAM: protein of unknown function DUF1704; KEGG: vvy:VVA0030 hypothetical protein; hypothetical protein 3439999 4921361 Shew_2900 Shewanella loihica PV-4 hypothetical protein YP_001095025.1 3438008 D 323850 CDS YP_001095026.1 127513829 4921362 3440234..3440908 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: gbe:GbCGDNIH1_2224 phosphoesterase, PAP2 family; PA-phosphatase-like phosphoesterase 3440908 4921362 Shew_2901 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001095026.1 3440234 D 323850 CDS YP_001095027.1 127513830 4921363 3441052..3442491 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_3066 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3442491 4921363 Shew_2902 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001095027.1 3441052 D 323850 CDS YP_001095028.1 127513831 4921364 complement(3442499..3443431) 1 NC_009092.1 KEGG: sfr:Sfri_0729 hypothetical protein; hypothetical protein 3443431 4921364 Shew_2903 Shewanella loihica PV-4 hypothetical protein YP_001095028.1 3442499 R 323850 CDS YP_001095029.1 127513832 4921365 complement(3443653..3444501) 1 NC_009092.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3444501 4921365 Shew_2904 Shewanella loihica PV-4 2-dehydro-3-deoxyphosphooctonate aldolase YP_001095029.1 3443653 R 323850 CDS YP_001095030.1 127513833 4921366 complement(3444564..3445841) 1 NC_009092.1 PFAM: protein of unknown function DUF819; KEGG: shm:Shewmr7_0802 protein of unknown function DUF819; hypothetical protein 3445841 4921366 Shew_2905 Shewanella loihica PV-4 hypothetical protein YP_001095030.1 3444564 R 323850 CDS YP_001095031.1 127513834 4921367 complement(3445968..3446756) 1 NC_009092.1 KEGG: shm:Shewmr7_0801 hypothetical protein; hypothetical protein 3446756 4921367 Shew_2906 Shewanella loihica PV-4 hypothetical protein YP_001095031.1 3445968 R 323850 CDS YP_001095032.1 127513835 4921368 complement(3446756..3447142) 1 NC_009092.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: shm:Shewmr7_0800 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB 3447142 4921368 Shew_2907 Shewanella loihica PV-4 invasion gene expression up-regulator, SirB YP_001095032.1 3446756 R 323850 CDS YP_001095033.1 127513836 4921369 complement(3447269..3448204) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_A5736 transcriptional regulator, LysR family; LysR family transcriptional regulator 3448204 4921369 Shew_2908 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095033.1 3447269 R 323850 CDS YP_001095034.1 127513837 4921370 3448269..3448682 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2504 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3448682 4921370 Shew_2909 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001095034.1 3448269 D 323850 CDS YP_001095035.1 127513838 4921371 complement(3448770..3449012) 1 NC_009092.1 hypothetical protein 3449012 4921371 Shew_2910 Shewanella loihica PV-4 hypothetical protein YP_001095035.1 3448770 R 323850 CDS YP_001095036.1 127513839 4921372 complement(3449202..3450044) 1 NC_009092.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: shm:Shewmr7_0798 modification methylase, HemK family; HemK family modification methylase 3450044 4921372 Shew_2911 Shewanella loihica PV-4 HemK family modification methylase YP_001095036.1 3449202 R 323850 CDS YP_001095037.1 127513840 4921373 complement(3450083..3451168) 1 NC_009092.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3451168 prfA 4921373 prfA Shewanella loihica PV-4 peptide chain release factor 1 YP_001095037.1 3450083 R 323850 CDS YP_001095038.1 127513841 4921173 complement(3451182..3452432) 1 NC_009092.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 3452432 hemA 4921173 hemA Shewanella loihica PV-4 glutamyl-tRNA reductase YP_001095038.1 3451182 R 323850 CDS YP_001095039.1 127513842 4921174 3452752..3453402 1 NC_009092.1 PFAM: outer membrane lipoprotein LolB; KEGG: she:Shewmr4_3171 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3453402 4921174 Shew_2914 Shewanella loihica PV-4 outer membrane lipoprotein LolB YP_001095039.1 3452752 D 323850 CDS YP_001095040.1 127513843 4921175 3453389..3454243 1 NC_009092.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3454243 ipk 4921175 ipk Shewanella loihica PV-4 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001095040.1 3453389 D 323850 CDS YP_001095041.1 127513844 4921176 3454282..3455256 1 NC_009092.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3455256 4921176 Shew_2916 Shewanella loihica PV-4 ribose-phosphate pyrophosphokinase YP_001095041.1 3454282 D 323850 CDS YP_001095042.1 127513845 4921177 complement(3455356..3455763) 1 NC_009092.1 hypothetical protein 3455763 4921177 Shew_2917 Shewanella loihica PV-4 hypothetical protein YP_001095042.1 3455356 R 323850 CDS YP_001095043.1 127513846 4921178 complement(3455776..3456282) 1 NC_009092.1 hypothetical protein 3456282 4921178 Shew_2918 Shewanella loihica PV-4 hypothetical protein YP_001095043.1 3455776 R 323850 CDS YP_001095044.1 127513847 4924171 complement(3457797..3458888) 1 NC_009092.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3458888 4924171 Shew_2919 Shewanella loihica PV-4 GTP-dependent nucleic acid-binding protein EngD YP_001095044.1 3457797 R 323850 CDS YP_001095045.1 127513848 4921180 complement(3458959..3459546) 1 NC_009092.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3459546 4921180 Shew_2920 Shewanella loihica PV-4 peptidyl-tRNA hydrolase YP_001095045.1 3458959 R 323850 CDS YP_001095046.1 127513849 4921181 complement(3459650..3460843) 1 NC_009092.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_1071 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3460843 4921181 Shew_2921 Shewanella loihica PV-4 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_001095046.1 3459650 R 323850 CDS YP_001095047.1 127513850 4921182 3461042..3461344 1 NC_009092.1 KEGG: shm:Shewmr7_1070 hypothetical protein; hypothetical protein 3461344 4921182 Shew_2922 Shewanella loihica PV-4 hypothetical protein YP_001095047.1 3461042 D 323850 CDS YP_001095048.1 127513851 4921183 3461443..3462867 1 NC_009092.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3462867 4921183 Shew_2923 Shewanella loihica PV-4 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001095048.1 3461443 D 323850 CDS YP_001095049.1 127513852 4921184 3463109..3464152 1 NC_009092.1 PFAM: PhoH family protein; KEGG: she:Shewmr4_1003 PhoH family protein; PhoH family protein 3464152 4921184 Shew_2924 Shewanella loihica PV-4 PhoH family protein YP_001095049.1 3463109 D 323850 CDS YP_001095050.1 127513853 4921185 3464142..3464615 1 NC_009092.1 PFAM: protein of unknown function UPF0054; KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease 3464615 4921185 Shew_2925 Shewanella loihica PV-4 putative metalloprotease YP_001095050.1 3464142 D 323850 CDS YP_001095051.1 127513854 4921186 3464643..3465518 1 NC_009092.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: shm:Shewmr7_1066 CBS domain containing protein; hypothetical protein 3465518 4921186 Shew_2926 Shewanella loihica PV-4 hypothetical protein YP_001095051.1 3464643 D 323850 CDS YP_001095052.1 127513855 4922129 3465545..3467158 1 NC_009092.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3467158 lnt 4922129 lnt Shewanella loihica PV-4 apolipoprotein N-acyltransferase YP_001095052.1 3465545 D 323850 CDS YP_001095053.1 127513856 4922130 complement(3467305..3467805) 1 NC_009092.1 PFAM: protein of unknown function DUF1451; KEGG: shm:Shewmr7_1063 protein of unknown function DUF1451; hypothetical protein 3467805 4922130 Shew_2928 Shewanella loihica PV-4 hypothetical protein YP_001095053.1 3467305 R 323850 CDS YP_001095054.1 127513857 4922131 3467927..3470518 1 NC_009092.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3470518 leuS 4922131 leuS Shewanella loihica PV-4 leucyl-tRNA synthetase YP_001095054.1 3467927 D 323850 CDS YP_001095055.1 127513858 4922132 3470587..3471081 1 NC_009092.1 PFAM: Rare lipoprotein B; KEGG: shm:Shewmr7_1061 rare lipoprotein B; rare lipoprotein B 3471081 4922132 Shew_2930 Shewanella loihica PV-4 rare lipoprotein B YP_001095055.1 3470587 D 323850 CDS YP_001095056.1 127513859 4922133 3471081..3472112 1 NC_009092.1 KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 3472112 4922133 Shew_2931 Shewanella loihica PV-4 DNA polymerase III subunit delta YP_001095056.1 3471081 D 323850 CDS YP_001095057.1 127513860 4922134 3472124..3472765 1 NC_009092.1 KEGG: sfr:Sfri_0702 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3472765 4922134 Shew_2932 Shewanella loihica PV-4 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001095057.1 3472124 D 323850 CDS YP_001095058.1 127513861 4922135 3472893..3473240 1 NC_009092.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: shm:Shewmr7_1058 iojap-like protein; iojap family protein 3473240 4922135 Shew_2933 Shewanella loihica PV-4 iojap family protein YP_001095058.1 3472893 D 323850 CDS YP_001095059.1 127513862 4922136 3473240..3473710 1 NC_009092.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3473710 4922136 Shew_2934 Shewanella loihica PV-4 rRNA large subunit methyltransferase YP_001095059.1 3473240 D 323850 CDS YP_001095060.1 127513863 4922137 3473788..3475671 1 NC_009092.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: shm:Shewmr7_1056 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 3475671 4922137 Shew_2935 Shewanella loihica PV-4 peptidoglycan glycosyltransferase YP_001095060.1 3473788 D 323850 CDS YP_001095061.1 127513864 4922138 3475658..3476764 1 NC_009092.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: shm:Shewmr7_1055 rod shape-determining protein RodA; rod shape-determining protein RodA 3476764 4922138 Shew_2936 Shewanella loihica PV-4 rod shape-determining protein RodA YP_001095061.1 3475658 D 323850 CDS YP_001095062.1 127513865 4922139 3476776..3477783 1 NC_009092.1 TIGRFAM: lytic murein transglycosylase B; KEGG: shm:Shewmr7_1054 lytic murein transglycosylase B; lytic murein transglycosylase B 3477783 4922139 Shew_2937 Shewanella loihica PV-4 lytic murein transglycosylase B YP_001095062.1 3476776 D 323850 CDS YP_001095063.1 127513866 4922140 3477764..3478561 1 NC_009092.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: sdn:Sden_0852 rare lipoprotein A; rare lipoprotein A 3478561 4922140 Shew_2938 Shewanella loihica PV-4 rare lipoprotein A YP_001095063.1 3477764 D 323850 CDS YP_001095064.1 127513867 4922141 3478697..3479869 1 NC_009092.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: she:Shewmr4_0987 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3479869 4922141 Shew_2939 Shewanella loihica PV-4 serine-type D-Ala-D-Ala carboxypeptidase YP_001095064.1 3478697 D 323850 CDS YP_001095065.1 127513868 4922142 3480004..3480270 1 NC_009092.1 PFAM: protein of unknown function DUF493; KEGG: shm:Shewmr7_1051 protein of unknown function DUF493; hypothetical protein 3480270 4922142 Shew_2940 Shewanella loihica PV-4 hypothetical protein YP_001095065.1 3480004 D 323850 CDS YP_001095066.1 127513869 4922143 3480360..3481016 1 NC_009092.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3481016 lipB 4922143 lipB Shewanella loihica PV-4 lipoate-protein ligase B YP_001095066.1 3480360 D 323850 CDS YP_001095067.1 127513870 4924079 3481018..3481983 1 NC_009092.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3481983 4924079 Shew_2942 Shewanella loihica PV-4 lipoyl synthase YP_001095067.1 3481018 D 323850 CDS YP_001095068.1 127513871 4924080 complement(3482088..3482537) 1 NC_009092.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sdn:Sden_2855 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 3482537 4924080 Shew_2943 Shewanella loihica PV-4 ribosomal-protein-alanine acetyltransferase YP_001095068.1 3482088 R 323850 CDS YP_001095069.1 127513872 4924081 complement(3482515..3482838) 1 NC_009092.1 hypothetical protein 3482838 4924081 Shew_2944 Shewanella loihica PV-4 hypothetical protein YP_001095069.1 3482515 R 323850 CDS YP_001095070.1 127513873 4924175 complement(3490137..3490973) 1 NC_009092.1 KEGG: shm:Shewmr7_3070 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 3490973 4924175 Shew_2945 Shewanella loihica PV-4 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001095070.1 3490137 R 323850 CDS YP_001095071.1 127513874 4924083 3491095..3491550 1 NC_009092.1 KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein 3491550 4924083 Shew_2946 Shewanella loihica PV-4 hypothetical protein YP_001095071.1 3491095 D 323850 CDS YP_001095072.1 127513875 4924084 complement(3491700..3492017) 1 NC_009092.1 KEGG: ppr:PBPRA1913 hypothetical protein; hypothetical protein 3492017 4924084 Shew_2947 Shewanella loihica PV-4 hypothetical protein YP_001095072.1 3491700 R 323850 CDS YP_001095073.1 127513876 4924085 complement(3492164..3494737) 1 NC_009092.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3072 ATPase AAA-2 domain protein; ATPase 3494737 4924085 Shew_2948 Shewanella loihica PV-4 ATPase YP_001095073.1 3492164 R 323850 CDS YP_001095074.1 127513877 4924086 complement(3494852..3495571) 1 NC_009092.1 PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 3495571 4924086 Shew_2949 Shewanella loihica PV-4 hypothetical protein YP_001095074.1 3494852 R 323850 CDS YP_001095075.1 127513878 4924087 complement(3495571..3496542) 1 NC_009092.1 KEGG: shm:Shewmr7_3074 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 3496542 4924087 Shew_2950 Shewanella loihica PV-4 RluA family pseudouridine synthase YP_001095075.1 3495571 R 323850 CDS YP_001095076.1 127513879 4924088 3496666..3497424 1 NC_009092.1 KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein 3497424 4924088 Shew_2951 Shewanella loihica PV-4 putative lipoprotein YP_001095076.1 3496666 D 323850 CDS YP_001095077.1 127513880 4923660 3498055..3499680 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3076 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3499680 4923660 Shew_2952 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001095077.1 3498055 D 323850 CDS YP_001095078.1 127513881 4924090 complement(3499682..3501262) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; CHASE4 domain protein; KEGG: sfr:Sfri_3981 diguanylate cyclase; diguanylate cyclase 3501262 4924090 Shew_2953 Shewanella loihica PV-4 diguanylate cyclase YP_001095078.1 3499682 R 323850 CDS YP_001095079.1 127513882 4924091 complement(3501394..3503256) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_3174 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3503256 4924091 Shew_2954 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001095079.1 3501394 R 323850 CDS YP_001095080.1 127513883 4924092 3503518..3504462 1 NC_009092.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3504462 4924092 Shew_2955 Shewanella loihica PV-4 ornithine cyclodeaminase YP_001095080.1 3503518 D 323850 CDS YP_001095081.1 127513884 4924050 3504734..3505306 1 NC_009092.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_0791 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3505306 4924050 Shew_2956 Shewanella loihica PV-4 ECF subfamily RNA polymerase sigma-24 factor YP_001095081.1 3504734 D 323850 CDS YP_001095082.1 127513885 4924051 3505306..3505818 1 NC_009092.1 KEGG: she:Shewmr4_3176 hypothetical protein; hypothetical protein 3505818 4924051 Shew_2957 Shewanella loihica PV-4 hypothetical protein YP_001095082.1 3505306 D 323850 CDS YP_001095083.1 127513886 4924052 3505815..3506762 1 NC_009092.1 KEGG: she:Shewmr4_3177 hypothetical protein; hypothetical protein 3506762 4924052 Shew_2958 Shewanella loihica PV-4 hypothetical protein YP_001095083.1 3505815 D 323850 CDS YP_001095084.1 127513887 4924053 complement(3506843..3507763) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4542 transcriptional regulator, LysR family; LysR family transcriptional regulator 3507763 4924053 Shew_2959 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095084.1 3506843 R 323850 CDS YP_001095085.1 127513888 4924054 3508399..3513378 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 3513378 4924054 Shew_2960 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001095085.1 3508399 D 323850 CDS YP_001095086.1 127513889 4924055 complement(3513460..3513693) 1 NC_009092.1 hypothetical protein 3513693 4924055 Shew_2961 Shewanella loihica PV-4 hypothetical protein YP_001095086.1 3513460 R 323850 CDS YP_001095087.1 127513890 4924056 complement(3513984..3515672) 1 NC_009092.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3515672 4924056 Shew_2962 Shewanella loihica PV-4 malate dehydrogenase YP_001095087.1 3513984 R 323850 CDS YP_001095088.1 127513891 4924057 complement(3515883..3516347) 1 NC_009092.1 PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein; hypothetical protein 3516347 4924057 Shew_2963 Shewanella loihica PV-4 hypothetical protein YP_001095088.1 3515883 R 323850 CDS YP_001095089.1 127513892 4924058 complement(3516403..3517545) 1 NC_009092.1 PFAM: beta-lactamase; KEGG: shm:Shewmr7_3266 beta-lactamase; beta-lactamase 3517545 4924058 Shew_2964 Shewanella loihica PV-4 beta-lactamase YP_001095089.1 3516403 R 323850 CDS YP_001095090.1 127513893 4924059 complement(3517568..3518836) 1 NC_009092.1 KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter 3518836 4924059 Shew_2965 Shewanella loihica PV-4 putative manganese transporter YP_001095090.1 3517568 R 323850 CDS YP_001095091.1 127513894 4924060 complement(3518956..3519486) 1 NC_009092.1 PFAM: membrane-flanked domain protein; KEGG: sfr:Sfri_0836 membrane-flanked domain protein; membrane-flanked domain-containing protein 3519486 4924060 Shew_2966 Shewanella loihica PV-4 membrane-flanked domain-containing protein YP_001095091.1 3518956 R 323850 CDS YP_001095092.1 127513895 4924061 3519716..3522289 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3184 TonB-dependent receptor; TonB-dependent receptor 3522289 4924061 Shew_2967 Shewanella loihica PV-4 TonB-dependent receptor YP_001095092.1 3519716 D 323850 CDS YP_001095093.1 127513896 4924062 3522536..3523171 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: she:Shewmr4_3183 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein 3523171 4924062 Shew_2968 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001095093.1 3522536 D 323850 CDS YP_001095094.1 127513897 4924063 complement(3523288..3523908) 1 NC_009092.1 KEGG: pha:PSHAa2040 hypothetical protein; hypothetical protein 3523908 4924063 Shew_2969 Shewanella loihica PV-4 hypothetical protein YP_001095094.1 3523288 R 323850 CDS YP_001095095.1 127513898 4924064 complement(3524043..3524543) 1 NC_009092.1 KEGG: shm:Shewmr7_0784 hypothetical protein; hypothetical protein 3524543 4924064 Shew_2970 Shewanella loihica PV-4 hypothetical protein YP_001095095.1 3524043 R 323850 CDS YP_001095096.1 127513899 4923812 complement(3524580..3524981) 1 NC_009092.1 KEGG: she:Shewmr4_3181 hypothetical protein; hypothetical protein 3524981 4923812 Shew_2971 Shewanella loihica PV-4 hypothetical protein YP_001095096.1 3524580 R 323850 CDS YP_001095097.1 127513900 4923813 complement(3525343..3526125) 1 NC_009092.1 KEGG: son:SO3846 hypothetical protein; hypothetical protein 3526125 4923813 Shew_2972 Shewanella loihica PV-4 hypothetical protein YP_001095097.1 3525343 R 323850 CDS YP_001095098.1 127513901 4923814 complement(3526276..3528360) 1 NC_009092.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_3179 endothelin-converting enzyme 1; endothelin-converting protein 1 3528360 4923814 Shew_2973 Shewanella loihica PV-4 endothelin-converting protein 1 YP_001095098.1 3526276 R 323850 CDS YP_001095099.1 127513902 4923815 complement(3528561..3529103) 1 NC_009092.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: vpa:VPA1135 putative acetyltransferase; hexapaptide repeat-containing transferase 3529103 4923815 Shew_2974 Shewanella loihica PV-4 hexapaptide repeat-containing transferase YP_001095099.1 3528561 R 323850 CDS YP_001095100.1 127513903 4923816 3529285..3529977 1 NC_009092.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0788 pseudouridine synthase, Rsu; pseudouridine synthase 3529977 4923816 Shew_2975 Shewanella loihica PV-4 pseudouridine synthase YP_001095100.1 3529285 D 323850 CDS YP_001095101.1 127513904 4923817 complement(3529992..3530429) 1 NC_009092.1 KEGG: shm:Shewmr7_0775 hypothetical protein; hypothetical protein 3530429 4923817 Shew_2976 Shewanella loihica PV-4 hypothetical protein YP_001095101.1 3529992 R 323850 CDS YP_001095102.1 127513905 4923818 3530664..3532616 1 NC_009092.1 KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 3532616 4923818 Shew_2977 Shewanella loihica PV-4 diguanylate cyclase YP_001095102.1 3530664 D 323850 CDS YP_001095103.1 127513906 4923819 complement(3532681..3533427) 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3860 hypothetical protein; extracellular solute-binding protein 3533427 4923819 Shew_2978 Shewanella loihica PV-4 extracellular solute-binding protein YP_001095103.1 3532681 R 323850 CDS YP_001095104.1 127513907 4923820 3533864..3535027 1 NC_009092.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: shm:Shewmr7_0771 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster binding protein 3535027 4923820 Shew_2979 Shewanella loihica PV-4 putative iron-sulfur cluster binding protein YP_001095104.1 3533864 D 323850 CDS YP_001095105.1 127513908 4923821 complement(3535238..3535441) 1 NC_009092.1 PFAM: protein of unknown function DUF1458; KEGG: sfr:Sfri_0829 protein of unknown function DUF1458; hypothetical protein 3535441 4923821 Shew_2980 Shewanella loihica PV-4 hypothetical protein YP_001095105.1 3535238 R 323850 CDS YP_001095106.1 127513909 4923822 complement(3535567..3537531) 1 NC_009092.1 PFAM: beta-lactamase domain protein; KEGG: son:SO0357 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 3537531 4923822 Shew_2981 Shewanella loihica PV-4 beta-lactamase domain-containing protein YP_001095106.1 3535567 R 323850 CDS YP_001095107.1 127513910 4923823 complement(3537658..3539376) 1 NC_009092.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: cps:CPS_0109 hypothetical protein; glucose-methanol-choline oxidoreductase 3539376 4923823 Shew_2982 Shewanella loihica PV-4 glucose-methanol-choline oxidoreductase YP_001095107.1 3537658 R 323850 CDS YP_001095108.1 127513911 4923824 complement(3539414..3540067) 1 NC_009092.1 KEGG: cps:CPS_0110 Tat (twin-arginine translocation) pathway signal sequence domain protein; Tat pathway signal sequence domain-containing protein 3540067 4923824 Shew_2983 Shewanella loihica PV-4 Tat pathway signal sequence domain-containing protein YP_001095108.1 3539414 R 323850 CDS YP_001095109.1 127513912 4923825 3540273..3541823 1 NC_009092.1 PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger, CDGSH-type domain protein; KEGG: cps:CPS_1903 glutamate synthase domain protein; ferredoxin-dependent glutamate synthase 3541823 4923825 Shew_2984 Shewanella loihica PV-4 ferredoxin-dependent glutamate synthase YP_001095109.1 3540273 D 323850 CDS YP_001095110.1 127513913 4923786 3542173..3543687 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein; Sel1 domain-containing protein 3543687 4923786 Shew_2985 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001095110.1 3542173 D 323850 CDS YP_001095111.1 127513914 4923787 complement(3543846..3546125) 1 NC_009092.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3546125 4923787 Shew_2986 Shewanella loihica PV-4 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001095111.1 3543846 R 323850 CDS YP_001095112.1 127513915 4923788 3546326..3547225 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0653 transcriptional regulator, LysR family; LysR family transcriptional regulator 3547225 4923788 Shew_2987 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095112.1 3546326 D 323850 CDS YP_001095113.1 127513916 4923789 complement(3547305..3548030) 1 NC_009092.1 PFAM: HDOD; KEGG: shm:Shewmr7_0652 putative signal transduction protein; putative signal transduction protein 3548030 4923789 Shew_2988 Shewanella loihica PV-4 putative signal transduction protein YP_001095113.1 3547305 R 323850 CDS YP_001095114.1 127513917 4923790 complement(3548272..3548883) 1 NC_009092.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: aeh:Mlg_0488 lipolytic enzyme, G-D-S-L family; GDSL family lipase 3548883 4923790 Shew_2989 Shewanella loihica PV-4 GDSL family lipase YP_001095114.1 3548272 R 323850 CDS YP_001095115.1 127513918 4923791 complement(3548977..3550947) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent receptor 3550947 4923791 Shew_2990 Shewanella loihica PV-4 TonB-dependent receptor YP_001095115.1 3548977 R 323850 CDS YP_001095116.1 127513919 4923792 complement(3551485..3551835) 1 NC_009092.1 PFAM: protein of unknown function DUF805; KEGG: sfr:Sfri_4038 protein of unknown function DUF805; hypothetical protein 3551835 4923792 Shew_2991 Shewanella loihica PV-4 hypothetical protein YP_001095116.1 3551485 R 323850 CDS YP_001095117.1 127513920 4923793 complement(3551977..3553278) 1 NC_009092.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfr:Sfri_0801 amidohydrolase; amidohydrolase 3553278 4923793 Shew_2992 Shewanella loihica PV-4 amidohydrolase YP_001095117.1 3551977 R 323850 CDS YP_001095118.1 127513921 4923794 complement(3553467..3554120) 1 NC_009092.1 KEGG: she:Shewmr4_3303 hypothetical protein; hypothetical protein 3554120 4923794 Shew_2993 Shewanella loihica PV-4 hypothetical protein YP_001095118.1 3553467 R 323850 CDS YP_001095119.1 127513922 4923795 3554374..3554748 1 NC_009092.1 PFAM: Penicillinase repressor; KEGG: sfr:Sfri_3585 transcriptional repressor, CopY family protein; CopY family transcriptional regulator 3554748 4923795 Shew_2994 Shewanella loihica PV-4 CopY family transcriptional regulator YP_001095119.1 3554374 D 323850 CDS YP_001095120.1 127513923 4923796 3554748..3556001 1 NC_009092.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56, BlaR1; KEGG: sfr:Sfri_3584 TonB family protein; TonB family protein 3556001 4923796 Shew_2995 Shewanella loihica PV-4 TonB family protein YP_001095120.1 3554748 D 323850 CDS YP_001095121.1 127513924 4923797 3556266..3557951 1 NC_009092.1 KEGG: cps:CPS_0549 hypothetical protein; hypothetical protein 3557951 4923797 Shew_2996 Shewanella loihica PV-4 hypothetical protein YP_001095121.1 3556266 D 323850 CDS YP_001095122.1 127513925 4923798 3557941..3558597 1 NC_009092.1 KEGG: cps:CPS_0544 hypothetical protein; acetyltransferase-like protein 3558597 4923798 Shew_2997 Shewanella loihica PV-4 acetyltransferase-like protein YP_001095122.1 3557941 D 323850 CDS YP_001095123.1 127513926 4923799 3558692..3559504 1 NC_009092.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdn:Sden_0949 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 3559504 4923799 Shew_2998 Shewanella loihica PV-4 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001095123.1 3558692 D 323850 CDS YP_001095124.1 127513927 4923800 3559546..3559812 1 NC_009092.1 KEGG: cps:CPS_0547 hypothetical protein; hypothetical protein 3559812 4923800 Shew_2999 Shewanella loihica PV-4 hypothetical protein YP_001095124.1 3559546 D 323850 CDS YP_001095125.1 127513928 4923405 3559832..3561589 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_0546 GGDEF domain protein; diguanylate cyclase 3561589 4923405 Shew_3000 Shewanella loihica PV-4 diguanylate cyclase YP_001095125.1 3559832 D 323850 CDS YP_001095126.1 127513929 4923406 3561763..3563940 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_4167 sodium:dicarboxylate symporter family/bacterial extracellular solute-binding family 3 protein; extracellular solute-binding protein 3563940 4923406 Shew_3001 Shewanella loihica PV-4 extracellular solute-binding protein YP_001095126.1 3561763 D 323850 CDS YP_001095127.1 127513930 4923407 complement(3563943..3564755) 1 NC_009092.1 KEGG: she:Shewmr4_2079 hypothetical protein; hypothetical protein 3564755 4923407 Shew_3002 Shewanella loihica PV-4 hypothetical protein YP_001095127.1 3563943 R 323850 CDS YP_001095128.1 127513931 4923408 complement(3564950..3567184) 1 NC_009092.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 3567184 fadE 4923408 fadE Shewanella loihica PV-4 acyl-CoA dehydrogenase YP_001095128.1 3564950 R 323850 CDS YP_001095129.1 127513932 4923409 3567633..3568376 1 NC_009092.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: shm:Shewmr7_2809 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 3568376 4923409 Shew_3004 Shewanella loihica PV-4 hypothetical protein YP_001095129.1 3567633 D 323850 CDS YP_001095130.1 127513933 4923410 3568387..3569775 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_2810 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3569775 4923410 Shew_3005 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001095130.1 3568387 D 323850 CDS YP_001095131.1 127513934 4923411 3569777..3570346 1 NC_009092.1 KEGG: son:SO1518 hypothetical protein; hypothetical protein 3570346 4923411 Shew_3006 Shewanella loihica PV-4 hypothetical protein YP_001095131.1 3569777 D 323850 CDS YP_001095132.1 127513935 4923412 complement(3570632..3571525) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_1855 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 3571525 4923412 Shew_3007 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095132.1 3570632 R 323850 CDS YP_001095133.1 127513936 4923413 3571739..3572017 1 NC_009092.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: par:Psyc_0857 peptidylprolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3572017 4923413 Shew_3008 Shewanella loihica PV-4 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001095133.1 3571739 D 323850 CDS YP_001095134.1 127513937 4923414 complement(3572454..3573467) 1 NC_009092.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 3573467 4923414 Shew_3009 Shewanella loihica PV-4 transposase IS116/IS110/IS902 family protein YP_001095134.1 3572454 R 323850 CDS YP_001095135.1 127513938 4923415 3573906..3574649 1 NC_009092.1 KEGG: ppr:PBPRB0920 hypothetical protein; hypothetical protein 3574649 4923415 Shew_3010 Shewanella loihica PV-4 hypothetical protein YP_001095135.1 3573906 D 323850 CDS YP_001095136.1 127513939 4923416 3574936..3576291 1 NC_009092.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: noc:Noc_1840 divalent cation transporter; magnesium transporter 3576291 4923416 Shew_3011 Shewanella loihica PV-4 magnesium transporter YP_001095136.1 3574936 D 323850 CDS YP_001095137.1 127513940 4923417 complement(3576298..3577191) 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sdn:Sden_1606 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3577191 4923417 Shew_3012 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001095137.1 3576298 R 323850 CDS YP_001095138.1 127513941 4923418 3577976..3579472 1 NC_009092.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sfr:Sfri_0764 sodium/proline symporter; sodium/proline symporter 3579472 4923418 Shew_3013 Shewanella loihica PV-4 sodium/proline symporter YP_001095138.1 3577976 D 323850 CDS YP_001095139.1 127513942 4923065 3579485..3580585 1 NC_009092.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 3580585 4923065 Shew_3014 Shewanella loihica PV-4 gamma-glutamyl kinase YP_001095139.1 3579485 D 323850 CDS YP_001095140.1 127513943 4923066 3580588..3581835 1 NC_009092.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: shm:Shewmr7_3942 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 3581835 4923066 Shew_3015 Shewanella loihica PV-4 gamma-glutamyl phosphate reductase YP_001095140.1 3580588 D 323850 CDS YP_001095141.1 127513944 4923067 3581922..3582716 1 NC_009092.1 KEGG: sfr:Sfri_0761 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 3582716 4923067 Shew_3016 Shewanella loihica PV-4 pyrroline-5-carboxylate reductase YP_001095141.1 3581922 D 323850 CDS YP_001095142.1 127513945 4923068 complement(3582796..3584091) 1 NC_009092.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: she:Shewmr4_3310 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3584091 4923068 Shew_3017 Shewanella loihica PV-4 glycerophosphoryl diester phosphodiesterase YP_001095142.1 3582796 R 323850 CDS YP_001095143.1 127513946 4923069 complement(3584161..3584949) 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: sfr:Sfri_0775 alpha/beta hydrolase fold; alpha/beta hydrolase 3584949 4923069 Shew_3018 Shewanella loihica PV-4 alpha/beta hydrolase YP_001095143.1 3584161 R 323850 CDS YP_001095144.1 127513947 4923070 complement(3584946..3585968) 1 NC_009092.1 KEGG: sfr:Sfri_0774 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein 3585968 4923070 Shew_3019 Shewanella loihica PV-4 zinc carboxypeptidase-related protein YP_001095144.1 3584946 R 323850 CDS YP_001095145.1 127513948 4923071 3586280..3586807 1 NC_009092.1 KEGG: pfo:Pfl_4744 hypothetical protein; hypothetical protein 3586807 4923071 Shew_3020 Shewanella loihica PV-4 hypothetical protein YP_001095145.1 3586280 D 323850 CDS YP_001095146.1 127513949 4923072 complement(3586876..3588537) 1 NC_009092.1 PFAM: peptidase domain protein; Endonuclease I; KEGG: sdn:Sden_3289 endonuclease I; endonuclease I 3588537 4923072 Shew_3021 Shewanella loihica PV-4 endonuclease I YP_001095146.1 3586876 R 323850 CDS YP_001095147.1 127513950 4923073 complement(3588794..3589474) 1 NC_009092.1 KEGG: son:SO2798 hypothetical protein; hypothetical protein 3589474 4923073 Shew_3022 Shewanella loihica PV-4 hypothetical protein YP_001095147.1 3588794 R 323850 CDS YP_001095148.1 127513951 4923074 3589718..3590806 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_0758 diguanylate cyclase; diguanylate cyclase 3590806 4923074 Shew_3023 Shewanella loihica PV-4 diguanylate cyclase YP_001095148.1 3589718 D 323850 CDS YP_001095149.1 127513952 4923075 3590943..3592613 1 NC_009092.1 PFAM: Amidohydrolase 3; KEGG: sdn:Sden_0948 amidohydrolase 3; amidohydrolase 3 3592613 4923075 Shew_3024 Shewanella loihica PV-4 amidohydrolase 3 YP_001095149.1 3590943 D 323850 CDS YP_001095150.1 127513953 4923076 complement(3592669..3594180) 1 NC_009092.1 KEGG: she:Shewmr4_3207 hypothetical protein; hypothetical protein 3594180 4923076 Shew_3025 Shewanella loihica PV-4 hypothetical protein YP_001095150.1 3592669 R 323850 CDS YP_001095151.1 127513954 4923077 complement(3594180..3595832) 1 NC_009092.1 KEGG: she:Shewmr4_3206 hypothetical protein; hypothetical protein 3595832 4923077 Shew_3026 Shewanella loihica PV-4 hypothetical protein YP_001095151.1 3594180 R 323850 CDS YP_001095152.1 127513955 4923078 3596082..3596381 1 NC_009092.1 KEGG: tbd:Tbd_1307 hypothetical protein; hypothetical protein 3596381 4923078 Shew_3027 Shewanella loihica PV-4 hypothetical protein YP_001095152.1 3596082 D 323850 CDS YP_001095153.1 127513956 4923079 3597044..3598489 1 NC_009092.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: sdn:Sden_1075 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 3598489 4923079 Shew_3028 Shewanella loihica PV-4 phospholipase D/transphosphatidylase YP_001095153.1 3597044 D 323850 CDS YP_001095154.1 127513957 4923010 complement(3598555..3599025) 1 NC_009092.1 PFAM: protein of unknown function DUF985; KEGG: she:Shewmr4_3317 protein of unknown function DUF985; hypothetical protein 3599025 4923010 Shew_3029 Shewanella loihica PV-4 hypothetical protein YP_001095154.1 3598555 R 323850 CDS YP_001095155.1 127513958 4923011 complement(3599254..3599520) 1 NC_009092.1 KEGG: sfr:Sfri_0741 hypothetical protein; hypothetical protein 3599520 4923011 Shew_3030 Shewanella loihica PV-4 hypothetical protein YP_001095155.1 3599254 R 323850 CDS YP_001095156.1 127513959 4923012 complement(3599732..3601114) 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: ppr:PBPRB1965 putative PAP2 family protein; PA-phosphatase-like phosphoesterase 3601114 4923012 Shew_3031 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001095156.1 3599732 R 323850 CDS YP_001095157.1 127513960 4923013 3601300..3601785 1 NC_009092.1 hypothetical protein 3601785 4923013 Shew_3032 Shewanella loihica PV-4 hypothetical protein YP_001095157.1 3601300 D 323850 CDS YP_001095158.1 127513961 4923014 complement(3601926..3604112) 1 NC_009092.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: she:Shewmr4_3321 uncharacterized domain; hypothetical protein 3604112 4923014 Shew_3033 Shewanella loihica PV-4 hypothetical protein YP_001095158.1 3601926 R 323850 CDS YP_001095159.1 127513962 4923015 complement(3604337..3605905) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tcx:Tcr_0397 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3605905 4923015 Shew_3034 Shewanella loihica PV-4 diguanylate cyclase YP_001095159.1 3604337 R 323850 CDS YP_001095160.1 127513963 4923016 complement(3606127..3606375) 1 NC_009092.1 KEGG: son:SO0793 hypothetical protein; hypothetical protein 3606375 4923016 Shew_3035 Shewanella loihica PV-4 hypothetical protein YP_001095160.1 3606127 R 323850 CDS YP_001095161.1 127513964 4923017 complement(3606539..3607366) 1 NC_009092.1 KEGG: sdn:Sden_3769 hypothetical protein; hypothetical protein 3607366 4923017 Shew_3036 Shewanella loihica PV-4 hypothetical protein YP_001095161.1 3606539 R 323850 CDS YP_001095162.1 127513965 4923018 complement(3607351..3608304) 1 NC_009092.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: sdn:Sden_3770 S6 modification enzyme RimK; alpha-L-glutamate ligase 3608304 4923018 Shew_3037 Shewanella loihica PV-4 alpha-L-glutamate ligase YP_001095162.1 3607351 R 323850 CDS YP_001095163.1 127513966 4923019 3608511..3610283 1 NC_009092.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: sdn:Sden_3771 asparagine synthase, glutamine-hydrolyzing; asparagine synthase 3610283 4923019 Shew_3038 Shewanella loihica PV-4 asparagine synthase YP_001095163.1 3608511 D 323850 CDS YP_001095164.1 127513967 4923020 complement(3610313..3610882) 1 NC_009092.1 PFAM: protein of unknown function DUF159; KEGG: sdn:Sden_3234 protein of unknown function DUF159; hypothetical protein 3610882 4923020 Shew_3039 Shewanella loihica PV-4 hypothetical protein YP_001095164.1 3610313 R 323850 CDS YP_001095165.1 127513968 4923021 3611450..3613165 1 NC_009092.1 hypothetical protein 3613165 4923021 Shew_3040 Shewanella loihica PV-4 hypothetical protein YP_001095165.1 3611450 D 323850 CDS YP_001095166.1 127513969 4923022 3613158..3614087 1 NC_009092.1 hypothetical protein 3614087 4923022 Shew_3041 Shewanella loihica PV-4 hypothetical protein YP_001095166.1 3613158 D 323850 CDS YP_001095167.1 127513970 4923023 complement(3614166..3614552) 1 NC_009092.1 KEGG: shm:Shewmr7_0629 hypothetical protein; hypothetical protein 3614552 4923023 Shew_3042 Shewanella loihica PV-4 hypothetical protein YP_001095167.1 3614166 R 323850 CDS YP_001095168.1 127513971 4922782 3614743..3614991 1 NC_009092.1 KEGG: cps:CPS_2512 hypothetical protein; hypothetical protein 3614991 4922782 Shew_3043 Shewanella loihica PV-4 hypothetical protein YP_001095168.1 3614743 D 323850 CDS YP_001095169.1 127513972 4922783 3615299..3617365 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein; methyl-accepting chemotaxis sensory transducer 3617365 4922783 Shew_3044 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001095169.1 3615299 D 323850 CDS YP_001095170.1 127513973 4922784 3617527..3618633 1 NC_009092.1 KEGG: son:SO3714 sugar-binding protein, putative; sugar-binding protein 3618633 4922784 Shew_3045 Shewanella loihica PV-4 sugar-binding protein YP_001095170.1 3617527 D 323850 CDS YP_001095171.1 127513974 4922785 3618821..3619141 1 NC_009092.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: ypn:YPN_1479 decarboxylase; carboxymuconolactone decarboxylase 3619141 4922785 Shew_3046 Shewanella loihica PV-4 carboxymuconolactone decarboxylase YP_001095171.1 3618821 D 323850 CDS YP_001095172.1 127513975 4922786 3619428..3620495 1 NC_009092.1 KEGG: rso:RSc0206 hypothetical signal peptide protein; putative signal peptide protein 3620495 4922786 Shew_3047 Shewanella loihica PV-4 putative signal peptide protein YP_001095172.1 3619428 D 323850 CDS YP_001095173.1 127513976 4922787 3620607..3621653 1 NC_009092.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein; alcohol dehydrogenase 3621653 4922787 Shew_3048 Shewanella loihica PV-4 alcohol dehydrogenase YP_001095173.1 3620607 D 323850 CDS YP_001095174.1 127513977 4922788 complement(3621793..3623010) 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: mmp:MMP0797 general substrate transporter; major facilitator superfamily transporter 3623010 4922788 Shew_3049 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001095174.1 3621793 R 323850 CDS YP_001095175.1 127513978 4922789 complement(3623064..3623420) 1 NC_009092.1 KEGG: rso:RSc0630 hypothetical protein; hypothetical protein 3623420 4922789 Shew_3050 Shewanella loihica PV-4 hypothetical protein YP_001095175.1 3623064 R 323850 CDS YP_001095176.1 127513979 4922790 complement(3623519..3624007) 1 NC_009092.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase; cupin 3624007 4922790 Shew_3051 Shewanella loihica PV-4 cupin YP_001095176.1 3623519 R 323850 CDS YP_001095177.1 127513980 4922791 3624222..3625118 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator 3625118 4922791 Shew_3052 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001095177.1 3624222 D 323850 CDS YP_001095178.1 127513981 4922792 complement(3625140..3626402) 1 NC_009092.1 PFAM: beta-lactamase; KEGG: bur:Bcep18194_C7182 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3626402 4922792 Shew_3053 Shewanella loihica PV-4 serine-type D-Ala-D-Ala carboxypeptidase YP_001095178.1 3625140 R 323850 CDS YP_001095179.1 127513982 4922793 3626609..3627187 1 NC_009092.1 KEGG: abo:ABO_1660 hypothetical protein; hypothetical protein 3627187 4922793 Shew_3054 Shewanella loihica PV-4 hypothetical protein YP_001095179.1 3626609 D 323850 CDS YP_001095180.1 127513983 4922794 3627443..3627892 1 NC_009092.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sfr:Sfri_3571 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 3627892 4922794 Shew_3055 Shewanella loihica PV-4 zinc-binding CMP/dCMP deaminase YP_001095180.1 3627443 D 323850 CDS YP_001095181.1 127513984 4922795 3628033..3628605 1 NC_009092.1 KEGG: ilo:IL1589 hypothetical protein; hypothetical protein 3628605 4922795 Shew_3056 Shewanella loihica PV-4 hypothetical protein YP_001095181.1 3628033 D 323850 CDS YP_001095182.1 127513985 4922796 3628635..3628967 1 NC_009092.1 hypothetical protein 3628967 4922796 Shew_3057 Shewanella loihica PV-4 hypothetical protein YP_001095182.1 3628635 D 323850 CDS YP_001095183.1 127513986 4922658 3629157..3630353 1 NC_009092.1 PFAM: beta-lactamase; KEGG: mxa:MXAN_6409 putative beta-lactamase; beta-lactamase 3630353 4922658 Shew_3058 Shewanella loihica PV-4 beta-lactamase YP_001095183.1 3629157 D 323850 CDS YP_001095184.1 127513987 4922659 complement(3630516..3630911) 1 NC_009092.1 KEGG: cps:CPS_4414 hypothetical protein; hypothetical protein 3630911 4922659 Shew_3059 Shewanella loihica PV-4 hypothetical protein YP_001095184.1 3630516 R 323850 CDS YP_001095185.1 127513988 4922660 3631146..3633872 1 NC_009092.1 KEGG: she:Shewmr4_3416 hypothetical protein; hypothetical protein 3633872 4922660 Shew_3060 Shewanella loihica PV-4 hypothetical protein YP_001095185.1 3631146 D 323850 CDS YP_001095186.1 127513989 4922661 3634107..3634916 1 NC_009092.1 hypothetical protein 3634916 4922661 Shew_3061 Shewanella loihica PV-4 hypothetical protein YP_001095186.1 3634107 D 323850 CDS YP_001095187.1 127513990 4922662 complement(3635485..3638373) 1 NC_009092.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3638373 4922662 Shew_3062 Shewanella loihica PV-4 glycine dehydrogenase YP_001095187.1 3635485 R 323850 CDS YP_001095188.1 127513991 4922663 complement(3638542..3638931) 1 NC_009092.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3638931 4922663 Shew_3063 Shewanella loihica PV-4 glycine cleavage system protein H YP_001095188.1 3638542 R 323850 CDS YP_001095189.1 127513992 4922664 complement(3639125..3640219) 1 NC_009092.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3640219 gcvT 4922664 gcvT Shewanella loihica PV-4 glycine cleavage system aminomethyltransferase T YP_001095189.1 3639125 R 323850 CDS YP_001095190.1 127513993 4922665 complement(3640696..3641904) 1 NC_009092.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3641904 4922665 Shew_3065 Shewanella loihica PV-4 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_001095190.1 3640696 R 323850 CDS YP_001095191.1 127513994 4922666 complement(3641916..3643157) 1 NC_009092.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: she:Shewmr4_3333 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3643157 4922666 Shew_3066 Shewanella loihica PV-4 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_001095191.1 3641916 R 323850 CDS YP_001095192.1 127513995 4922667 complement(3643218..3643790) 1 NC_009092.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shm:Shewmr7_0619 YecA family protein; yecA family protein 3643790 4922667 Shew_3067 Shewanella loihica PV-4 yecA family protein YP_001095192.1 3643218 R 323850 CDS YP_001095193.1 127513996 4922668 3644074..3644382 1 NC_009092.1 PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein 3644382 4922668 Shew_3068 Shewanella loihica PV-4 hypothetical protein YP_001095193.1 3644074 D 323850 CDS YP_001095194.1 127513997 4922669 3644976..3645587 1 NC_009092.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: shm:Shewmr7_0617 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 3645587 4922669 Shew_3069 Shewanella loihica PV-4 5-formyltetrahydrofolate cyclo-ligase YP_001095194.1 3644976 D 323850 CDS YP_001095195.1 127513998 4922670 complement(3645607..3646467) 1 NC_009092.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3481 hypothetical protein; extracellular solute-binding protein 3646467 4922670 Shew_3070 Shewanella loihica PV-4 extracellular solute-binding protein YP_001095195.1 3645607 R 323850 CDS YP_001095196.1 127513999 4922671 3646825..3647334 1 NC_009092.1 KEGG: son:SO3163 lipoprotein; lipoprotein 3647334 4922671 Shew_3071 Shewanella loihica PV-4 lipoprotein YP_001095196.1 3646825 D 323850 CDS YP_001095197.1 127514000 4922315 complement(3647350..3647943) 1 NC_009092.1 KEGG: reu:Reut_A0537 cold-shock protein, DNA-binding; cold-shock protein, DNA-binding 3647943 4922315 Shew_3072 Shewanella loihica PV-4 cold-shock protein, DNA-binding YP_001095197.1 3647350 R 323850 CDS YP_001095198.1 127514001 4922316 complement(3648126..3648794) 1 NC_009092.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3648794 4922316 Shew_3073 Shewanella loihica PV-4 uracil-DNA glycosylase YP_001095198.1 3648126 R 323850 CDS YP_001095199.1 127514002 4922317 3648928..3649464 1 NC_009092.1 KEGG: son:SO3655 pilin, putative; pilin 3649464 4922317 Shew_3074 Shewanella loihica PV-4 pilin YP_001095199.1 3648928 D 323850 CDS YP_001095200.1 127514003 4922318 3649584..3649901 1 NC_009092.1 KEGG: son:SO3656 hypothetical protein; hypothetical protein 3649901 4922318 Shew_3075 Shewanella loihica PV-4 hypothetical protein YP_001095200.1 3649584 D 323850 CDS YP_001095201.1 127514004 4922319 complement(3650010..3650624) 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_3132 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3650624 4922319 Shew_3076 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001095201.1 3650010 R 323850 CDS YP_001095202.1 127514005 4922320 complement(3650646..3652247) 1 NC_009092.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: she:Shewmr4_0889 peptidase S10, serine carboxypeptidase; peptidase S10, serine carboxypeptidase 3652247 4922320 Shew_3077 Shewanella loihica PV-4 peptidase S10, serine carboxypeptidase YP_001095202.1 3650646 R 323850 CDS YP_001095203.1 127514006 4922321 complement(3652393..3653940) 1 NC_009092.1 PFAM: Ppx/GppA phosphatase; KEGG: she:Shewmr4_2208 Ppx/GppA phosphatase; Ppx/GppA phosphatase 3653940 4922321 Shew_3078 Shewanella loihica PV-4 Ppx/GppA phosphatase YP_001095203.1 3652393 R 323850 CDS YP_001095204.1 127514007 4922322 complement(3653958..3656132) 1 NC_009092.1 PFAM: Polyphosphate kinase; KEGG: shm:Shewmr7_2284 polyphosphate kinase; polyphosphate kinase 3656132 4922322 Shew_3079 Shewanella loihica PV-4 polyphosphate kinase YP_001095204.1 3653958 R 323850 CDS YP_001095205.1 127514008 4922323 3656458..3656997 1 NC_009092.1 KEGG: sfr:Sfri_3095 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 3656997 4922323 Shew_3080 Shewanella loihica PV-4 thiol:disulfide interchange protein YP_001095205.1 3656458 D 323850 CDS YP_001095206.1 127514009 4922324 complement(3657178..3659751) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3096 TonB-dependent receptor; TonB-dependent receptor 3659751 4922324 Shew_3081 Shewanella loihica PV-4 TonB-dependent receptor YP_001095206.1 3657178 R 323850 CDS YP_001095207.1 127514010 4922325 3660367..3661815 1 NC_009092.1 KEGG: she:Shewmr4_0887 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; sigma-54 dependent trancsriptional regulator 3661815 4922325 Shew_3082 Shewanella loihica PV-4 sigma-54 dependent trancsriptional regulator YP_001095207.1 3660367 D 323850 CDS YP_001095208.1 127514011 4922326 3661997..3663439 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3136 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3663439 4922326 Shew_3083 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001095208.1 3661997 D 323850 CDS YP_001095209.1 127514012 4922327 3663756..3665351 1 NC_009092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3665351 4922327 Shew_3084 Shewanella loihica PV-4 AMP-dependent synthetase and ligase YP_001095209.1 3663756 D 323850 CDS YP_001095210.1 127514013 4922328 complement(3665501..3666013) 1 NC_009092.1 PFAM: Lipocalin family protein; KEGG: pat:Patl_0580 lipocalin-like; lipocalin family protein 3666013 4922328 Shew_3085 Shewanella loihica PV-4 lipocalin family protein YP_001095210.1 3665501 R 323850 CDS YP_001095211.1 127514014 4922329 3666372..3667352 1 NC_009092.1 KEGG: sfr:Sfri_3610 hypothetical protein; hypothetical protein 3667352 4922329 Shew_3086 Shewanella loihica PV-4 hypothetical protein YP_001095211.1 3666372 D 323850 CDS YP_001095212.1 127514015 4922251 complement(3667414..3669276) 1 NC_009092.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter-related protein; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 3669276 4922251 Shew_3087 Shewanella loihica PV-4 lipid ABC transporter ATPase/inner membrane protein YP_001095212.1 3667414 R 323850 CDS YP_001095213.1 127514016 4922252 complement(3669386..3670696) 1 NC_009092.1 PFAM: short chain fatty acid transporter; KEGG: shm:Shewmr7_2886 short chain fatty acid transporter; short chain fatty acid transporter 3670696 4922252 Shew_3088 Shewanella loihica PV-4 short chain fatty acid transporter YP_001095213.1 3669386 R 323850 CDS YP_001095214.1 127514017 4922253 3670884..3671207 1 NC_009092.1 KEGG: cps:CPS_1442 hypothetical protein; hypothetical protein 3671207 4922253 Shew_3089 Shewanella loihica PV-4 hypothetical protein YP_001095214.1 3670884 D 323850 CDS YP_001095215.1 127514018 4922254 complement(3671271..3671585) 1 NC_009092.1 KEGG: sfr:Sfri_0942 hypothetical protein; hypothetical protein 3671585 4922254 Shew_3090 Shewanella loihica PV-4 hypothetical protein YP_001095215.1 3671271 R 323850 CDS YP_001095216.1 127514019 4922255 3671697..3672320 1 NC_009092.1 PFAM: membrane-flanked domain protein; KEGG: sfr:Sfri_0941 membrane-flanked domain protein; membrane-flanked domain-containing protein 3672320 4922255 Shew_3091 Shewanella loihica PV-4 membrane-flanked domain-containing protein YP_001095216.1 3671697 D 323850 CDS YP_001095217.1 127514020 4922256 3672324..3673892 1 NC_009092.1 PFAM: membrane-flanked domain protein; KEGG: sfr:Sfri_0940 membrane-flanked domain protein; membrane-flanked domain-containing protein 3673892 4922256 Shew_3092 Shewanella loihica PV-4 membrane-flanked domain-containing protein YP_001095217.1 3672324 D 323850 CDS YP_001095218.1 127514021 4922257 3673945..3674499 1 NC_009092.1 PFAM: protein of unknown function DUF924; KEGG: she:Shewmr4_0877 protein of unknown function DUF924; hypothetical protein 3674499 4922257 Shew_3093 Shewanella loihica PV-4 hypothetical protein YP_001095218.1 3673945 D 323850 CDS YP_001095219.1 127514022 4922258 3674543..3675304 1 NC_009092.1 PFAM: protein of unknown function DUF81; KEGG: ppr:PBPRA2195 hypothetical protein; hypothetical protein 3675304 4922258 Shew_3094 Shewanella loihica PV-4 hypothetical protein YP_001095219.1 3674543 D 323850 CDS YP_001095220.1 127514023 4922259 complement(3675334..3675723) 1 NC_009092.1 hypothetical protein 3675723 4922259 Shew_3095 Shewanella loihica PV-4 hypothetical protein YP_001095220.1 3675334 R 323850 CDS YP_001095221.1 127514024 4922260 complement(3675728..3676711) 1 NC_009092.1 KEGG: gvi:gll1663 metalloprotease MEP1 homolog; metalloprotease MEP1-like protein 3676711 4922260 Shew_3096 Shewanella loihica PV-4 metalloprotease MEP1-like protein YP_001095221.1 3675728 R 323850 CDS YP_001095222.1 127514025 4922261 3676984..3679155 1 NC_009092.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3717 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3679155 4922261 Shew_3097 Shewanella loihica PV-4 TonB-dependent siderophore receptor YP_001095222.1 3676984 D 323850 CDS YP_001095223.1 127514026 4922262 complement(3679301..3680341) 1 NC_009092.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ppr:PBPRB1366 putative NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase 3680341 4922262 Shew_3098 Shewanella loihica PV-4 NADH:flavin oxidoreductase YP_001095223.1 3679301 R 323850 CDS YP_001095224.1 127514027 4922263 3680473..3681051 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_1157 transcriptional regulator, TetR family; TetR family transcriptional regulator 3681051 4922263 Shew_3099 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001095224.1 3680473 D 323850 CDS YP_001095225.1 127514028 4922264 complement(3681053..3681496) 1 NC_009092.1 PFAM: UspA domain protein; KEGG: sfr:Sfri_0938 UspA domain protein; UspA domain-containing protein 3681496 4922264 Shew_3100 Shewanella loihica PV-4 UspA domain-containing protein YP_001095225.1 3681053 R 323850 CDS YP_001095226.1 127514029 4922206 complement(3681687..3682118) 1 NC_009092.1 PFAM: UspA domain protein; KEGG: sfr:Sfri_0938 UspA domain protein; UspA domain-containing protein 3682118 4922206 Shew_3101 Shewanella loihica PV-4 UspA domain-containing protein YP_001095226.1 3681687 R 323850 CDS YP_001095227.1 127514030 4922207 complement(3682413..3682790) 1 NC_009092.1 KEGG: she:Shewmr4_0873 hypothetical protein; hypothetical protein 3682790 4922207 Shew_3102 Shewanella loihica PV-4 hypothetical protein YP_001095227.1 3682413 R 323850 CDS YP_001095228.1 127514031 4922208 3683054..3684478 1 NC_009092.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 3684478 4922208 Shew_3103 Shewanella loihica PV-4 aldehyde dehydrogenase YP_001095228.1 3683054 D 323850 CDS YP_001095229.1 127514032 4922209 3684492..3685076 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator 3685076 4922209 Shew_3104 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001095229.1 3684492 D 323850 CDS YP_001095230.1 127514033 4922210 complement(3685078..3685959) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pat:Patl_2651 transcriptional regulator, LysR family; LysR family transcriptional regulator 3685959 4922210 Shew_3105 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095230.1 3685078 R 323850 CDS YP_001095231.1 127514034 4922211 3686070..3686741 1 NC_009092.1 PFAM: ThiJ/PfpI domain protein; KEGG: pat:Patl_2650 ThiJ/PfpI; ThiJ/PfpI domain-containing protein 3686741 4922211 Shew_3106 Shewanella loihica PV-4 ThiJ/PfpI domain-containing protein YP_001095231.1 3686070 D 323850 CDS YP_001095232.1 127514035 4922212 3686903..3688060 1 NC_009092.1 PFAM: peptidase M19, renal dipeptidase; KEGG: shm:Shewmr7_0834 twin-arginine translocation pathway signal; peptidase M19 3688060 4922212 Shew_3107 Shewanella loihica PV-4 peptidase M19 YP_001095232.1 3686903 D 323850 CDS YP_001095233.1 127514036 4922213 complement(3689318..3689875) 1 NC_009092.1 hypothetical protein 3689875 4922213 Shew_3108 Shewanella loihica PV-4 hypothetical protein YP_001095233.1 3689318 R 323850 CDS YP_001095234.1 127514037 4922214 3690445..3691314 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_1975 protein of unknown function DUF6, transmembrane; hypothetical protein 3691314 4922214 Shew_3109 Shewanella loihica PV-4 hypothetical protein YP_001095234.1 3690445 D 323850 CDS YP_001095235.1 127514038 4922215 complement(3691659..3691868) 1 NC_009092.1 hypothetical protein 3691868 4922215 Shew_3110 Shewanella loihica PV-4 hypothetical protein YP_001095235.1 3691659 R 323850 CDS YP_001095236.1 127514039 4922216 complement(3691980..3692801) 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ppr:PBPRB1065 hypothetical oxidoreductase protein; NAD-dependent epimerase/dehydratase 3692801 4922216 Shew_3111 Shewanella loihica PV-4 NAD-dependent epimerase/dehydratase YP_001095236.1 3691980 R 323850 CDS YP_001095237.1 127514040 4922217 complement(3693260..3695050) 1 NC_009092.1 KEGG: sfr:Sfri_3690 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 3695050 4922217 Shew_3112 Shewanella loihica PV-4 flavocytochrome c YP_001095237.1 3693260 R 323850 CDS YP_001095238.1 127514041 4922218 3695449..3697413 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: sfr:Sfri_3689 periplasmic sensor signal transduction histidine kinase; histidine kinase 3697413 4922218 Shew_3113 Shewanella loihica PV-4 histidine kinase YP_001095238.1 3695449 D 323850 CDS YP_001095239.1 127514042 4922219 3697423..3698811 1 NC_009092.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_3688 two component, sigma54 specific, transcriptional regulator, fis family protein; two component, sigma54 specific, Fis family transcriptional regulator 3698811 4922219 Shew_3114 Shewanella loihica PV-4 two component, sigma54 specific, Fis family transcriptional regulator YP_001095239.1 3697423 D 323850 CDS YP_001095240.1 127514043 4922220 complement(3698873..3700186) 1 NC_009092.1 PFAM: sodium:dicarboxylate symporter; KEGG: sdn:Sden_2987 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3700186 4922220 Shew_3115 Shewanella loihica PV-4 sodium:dicarboxylate symporter YP_001095240.1 3698873 R 323850 CDS YP_001095241.1 127514044 4922079 complement(3700723..3701943) 1 NC_009092.1 KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein 3701943 4922079 Shew_3116 Shewanella loihica PV-4 hypothetical protein YP_001095241.1 3700723 R 323850 CDS YP_001095242.1 127514045 4922080 complement(3701945..3702598) 1 NC_009092.1 KEGG: sfr:Sfri_0526 hypothetical protein; hypothetical protein 3702598 4922080 Shew_3117 Shewanella loihica PV-4 hypothetical protein YP_001095242.1 3701945 R 323850 CDS YP_001095243.1 127514046 4922081 complement(3702599..3706270) 1 NC_009092.1 KEGG: she:Shewmr4_0638 hypothetical protein; hypothetical protein 3706270 4922081 Shew_3118 Shewanella loihica PV-4 hypothetical protein YP_001095243.1 3702599 R 323850 CDS YP_001095244.1 127514047 4922082 complement(3706698..3707411) 1 NC_009092.1 KEGG: son:SO4011 hypothetical protein; hypothetical protein 3707411 4922082 Shew_3119 Shewanella loihica PV-4 hypothetical protein YP_001095244.1 3706698 R 323850 CDS YP_001095245.1 127514048 4922083 3707988..3709160 1 NC_009092.1 PFAM: phosphate-selective porin O and P; KEGG: sdn:Sden_0638 phosphate-selective porin O and P; phosphate-selective porin O and P 3709160 4922083 Shew_3120 Shewanella loihica PV-4 phosphate-selective porin O and P YP_001095245.1 3707988 D 323850 CDS YP_001095246.1 127514049 4922084 3709313..3709828 1 NC_009092.1 KEGG: sdn:Sden_0639 FMN-binding; FMN-binding domain-containing protein 3709828 4922084 Shew_3121 Shewanella loihica PV-4 FMN-binding domain-containing protein YP_001095246.1 3709313 D 323850 CDS YP_001095247.1 127514050 4922085 3709997..3710797 1 NC_009092.1 PFAM: PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0640 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein 3710797 4922085 Shew_3122 Shewanella loihica PV-4 PepSY-associated TM helix domain-containing protein YP_001095247.1 3709997 D 323850 CDS YP_001095248.1 127514051 4922086 complement(3710930..3713299) 1 NC_009092.1 KEGG: shm:Shewmr7_3406 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 3713299 4922086 Shew_3123 Shewanella loihica PV-4 penicillin-binding protein 1B YP_001095248.1 3710930 R 323850 CDS YP_001095249.1 127514052 4922087 complement(3713327..3715858) 1 NC_009092.1 KEGG: shm:Shewmr7_3407 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB 3715858 4922087 Shew_3124 Shewanella loihica PV-4 ATP-dependent helicase HrpB YP_001095249.1 3713327 R 323850 CDS YP_001095250.1 127514053 4922088 complement(3715952..3718147) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3409 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3718147 4922088 Shew_3125 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001095250.1 3715952 R 323850 CDS YP_001095251.1 127514054 4922089 3718384..3718914 1 NC_009092.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: shm:Shewmr7_3410 2'-5' RNA ligase; 2'-5' RNA ligase 3718914 4922089 Shew_3126 Shewanella loihica PV-4 2'-5' RNA ligase YP_001095251.1 3718384 D 323850 CDS YP_001095252.1 127514055 4922090 complement(3718956..3720233) 1 NC_009092.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 3720233 4922090 Shew_3127 Shewanella loihica PV-4 aminopeptidase B YP_001095252.1 3718956 R 323850 CDS YP_001095253.1 127514056 4922091 3720572..3721276 1 NC_009092.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3721276 4922091 Shew_3128 Shewanella loihica PV-4 sugar fermentation stimulation protein A YP_001095253.1 3720572 D 323850 CDS YP_001095254.1 127514057 4922092 3721436..3721879 1 NC_009092.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_3292 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3721879 4922092 Shew_3129 Shewanella loihica PV-4 TraR/DksA family transcriptional regulator YP_001095254.1 3721436 D 323850 CDS YP_001095255.1 127514058 4921997 3721930..3722889 1 NC_009092.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: shm:Shewmr7_3293 glutamyl-tRNA synthetase, class Ic; glutamate--tRNA ligase 3722889 4921997 Shew_3130 Shewanella loihica PV-4 glutamate--tRNA ligase YP_001095255.1 3721930 D 323850 CDS YP_001095256.1 127514059 4921998 3722971..3724413 1 NC_009092.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); poly(A) polymerase 3724413 4921998 Shew_3131 Shewanella loihica PV-4 poly(A) polymerase YP_001095256.1 3722971 D 323850 CDS YP_001095257.1 127514060 4921999 3724413..3724901 1 NC_009092.1 KEGG: shm:Shewmr7_3295 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3724901 4921999 Shew_3132 Shewanella loihica PV-4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001095257.1 3724413 D 323850 CDS YP_001095258.1 127514061 4922000 3724997..3725791 1 NC_009092.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3725791 panB 4922000 panB Shewanella loihica PV-4 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001095258.1 3724997 D 323850 CDS YP_001095259.1 127514062 4922001 3725808..3726656 1 NC_009092.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3726656 panC 4922001 panC Shewanella loihica PV-4 pantoate--beta-alanine ligase YP_001095259.1 3725808 D 323850 CDS YP_001095260.1 127514063 4922002 3727506..3729149 1 NC_009092.1 PFAM: L-lactate permease; KEGG: shm:Shewmr7_2807 L-lactate permease; L-lactate permease 3729149 4922002 Shew_3135 Shewanella loihica PV-4 L-lactate permease YP_001095260.1 3727506 D 323850 CDS YP_001095261.1 127514064 4922003 3729217..3732021 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: she:Shewmr4_2735 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3732021 4922003 Shew_3136 Shewanella loihica PV-4 FAD linked oxidase domain-containing protein YP_001095261.1 3729217 D 323850 CDS YP_001095262.1 127514065 4922004 3732390..3732950 1 NC_009092.1 KEGG: she:Shewmr4_0724 hypothetical protein; hypothetical protein 3732950 4922004 Shew_3137 Shewanella loihica PV-4 hypothetical protein YP_001095262.1 3732390 D 323850 CDS YP_001095263.1 127514066 4922005 3733101..3733517 1 NC_009092.1 hypothetical protein 3733517 4922005 Shew_3138 Shewanella loihica PV-4 hypothetical protein YP_001095263.1 3733101 D 323850 CDS YP_001095264.1 127514067 4922006 3733514..3733828 1 NC_009092.1 hypothetical protein 3733828 4922006 Shew_3139 Shewanella loihica PV-4 hypothetical protein YP_001095264.1 3733514 D 323850 CDS YP_001095265.1 127514068 4922007 complement(3733918..3734706) 1 NC_009092.1 PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein; ABC transporter 3734706 4922007 Shew_3140 Shewanella loihica PV-4 ABC transporter YP_001095265.1 3733918 R 323850 CDS YP_001095266.1 127514069 4922008 complement(3734703..3735644) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0823 ABC transporter-related protein; ABC transporter-like protein 3735644 4922008 Shew_3141 Shewanella loihica PV-4 ABC transporter-like protein YP_001095266.1 3734703 R 323850 CDS YP_001095267.1 127514070 4922009 complement(3735749..3736279) 1 NC_009092.1 KEGG: shm:Shewmr7_0822 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 3736279 4922009 Shew_3142 Shewanella loihica PV-4 hypoxanthine phosphoribosyltransferase YP_001095267.1 3735749 R 323850 CDS YP_001095268.1 127514071 4922010 complement(3736298..3736957) 1 NC_009092.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 3736957 4922010 Shew_3143 Shewanella loihica PV-4 aromatic acid decarboxylase YP_001095268.1 3736298 R 323850 CDS YP_001095269.1 127514072 4922011 complement(3737005..3738444) 1 NC_009092.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0820 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3738444 4922011 Shew_3144 Shewanella loihica PV-4 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_001095269.1 3737005 R 323850 CDS YP_001095270.1 127514073 4921983 complement(3739119..3739715) 1 NC_009092.1 KEGG: cps:CPS_0193 hypothetical protein; hypothetical protein 3739715 4921983 Shew_3145 Shewanella loihica PV-4 hypothetical protein YP_001095270.1 3739119 R 323850 CDS YP_001095271.1 127514074 4921984 complement(3740452..3740916) 1 NC_009092.1 hypothetical protein 3740916 4921984 Shew_3146 Shewanella loihica PV-4 hypothetical protein YP_001095271.1 3740452 R 323850 CDS YP_001095272.1 127514075 4921985 complement(3742317..3742889) 1 NC_009092.1 KEGG: sdn:Sden_3258 hypothetical protein; hypothetical protein 3742889 4921985 Shew_3147 Shewanella loihica PV-4 hypothetical protein YP_001095272.1 3742317 R 323850 CDS YP_001095273.1 127514076 4921986 complement(3743787..3744224) 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: rso:RSc1851 putative transcription regulator protein; MarR family transcriptional regulator 3744224 4921986 Shew_3148 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001095273.1 3743787 R 323850 CDS YP_001095274.1 127514077 4921987 3744379..3744837 1 NC_009092.1 KEGG: sil:SPO1325 lipoprotein, putative; putative lipoprotein 3744837 4921987 Shew_3149 Shewanella loihica PV-4 putative lipoprotein YP_001095274.1 3744379 D 323850 CDS YP_001095275.1 127514078 4921988 3744852..3745148 1 NC_009092.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppr:PBPRA1783 hypothetical protein; antibiotic biosynthesis monooxygenase 3745148 4921988 Shew_3150 Shewanella loihica PV-4 antibiotic biosynthesis monooxygenase YP_001095275.1 3744852 D 323850 CDS YP_001095276.1 127514079 4921989 3745672..3748866 1 NC_009092.1 KEGG: sfr:Sfri_0187 hypothetical protein; hypothetical protein 3748866 4921989 Shew_3151 Shewanella loihica PV-4 hypothetical protein YP_001095276.1 3745672 D 323850 CDS YP_001095277.1 127514080 4921990 complement(3749031..3753968) 1 NC_009092.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: shm:Shewmr7_3529 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 3753968 4921990 Shew_3152 Shewanella loihica PV-4 peptidase S8/S53 subtilisin kexin sedolisin YP_001095277.1 3749031 R 323850 CDS YP_001095278.1 127514081 4921991 3754528..3755532 1 NC_009092.1 PFAM: regulatory protein, LysR; KEGG: she:Shewmr4_2072 transcriptional regulator, LysR family; LysR family transcriptional regulator 3755532 4921991 Shew_3153 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095278.1 3754528 D 323850 CDS YP_001095279.1 127514082 4921992 complement(3755682..3756656) 1 NC_009092.1 PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_3839 transcriptional regulator, LysR family; LysR family transcriptional regulator 3756656 4921992 Shew_3154 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095279.1 3755682 R 323850 CDS YP_001095280.1 127514083 4921993 3757039..3757548 1 NC_009092.1 KEGG: shm:Shewmr7_3838 hypothetical protein; hypothetical protein 3757548 4921993 Shew_3155 Shewanella loihica PV-4 hypothetical protein YP_001095280.1 3757039 D 323850 CDS YP_001095281.1 127514084 4921994 3757647..3758111 1 NC_009092.1 KEGG: sfr:Sfri_0615 hypothetical protein; hypothetical protein 3758111 4921994 Shew_3156 Shewanella loihica PV-4 hypothetical protein YP_001095281.1 3757647 D 323850 CDS YP_001095282.1 127514085 4921995 3758122..3758814 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfr:Sfri_0614 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin 3758814 4921995 Shew_3157 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001095282.1 3758122 D 323850 CDS YP_001095283.1 127514086 4921996 3758811..3759752 1 NC_009092.1 PFAM: Polysulphide reductase, NrfD; KEGG: shm:Shewmr7_3835 polysulphide reductase, NrfD; polysulfide reductase NrfD 3759752 4921996 Shew_3158 Shewanella loihica PV-4 polysulfide reductase NrfD YP_001095283.1 3758811 D 323850 CDS YP_001095284.1 127514087 4921936 complement(3759767..3760828) 1 NC_009092.1 KEGG: cps:CPS_4482 Bax domain protein; FlgJ-like protein 3760828 4921936 Shew_3159 Shewanella loihica PV-4 FlgJ-like protein YP_001095284.1 3759767 R 323850 CDS YP_001095285.1 127514088 4921937 3761384..3761872 1 NC_009092.1 hypothetical protein 3761872 4921937 Shew_3160 Shewanella loihica PV-4 hypothetical protein YP_001095285.1 3761384 D 323850 CDS YP_001095286.1 127514089 4921938 3762008..3762955 1 NC_009092.1 KEGG: son:SO0403 hypothetical protein; hypothetical protein 3762955 4921938 Shew_3161 Shewanella loihica PV-4 hypothetical protein YP_001095286.1 3762008 D 323850 CDS YP_001095287.1 127514090 4921939 3762993..3766559 1 NC_009092.1 KEGG: son:SO0404 hypothetical protein; hypothetical protein 3766559 4921939 Shew_3162 Shewanella loihica PV-4 hypothetical protein YP_001095287.1 3762993 D 323850 CDS YP_001095288.1 127514091 4921940 3766819..3767886 1 NC_009092.1 KEGG: she:Shewmr4_0458 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 3767886 4921940 Shew_3163 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase YP_001095288.1 3766819 D 323850 CDS YP_001095289.1 127514092 4921941 complement(3767947..3768672) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0917 ABC transporter-related protein; ABC transporter-like protein 3768672 4921941 Shew_3164 Shewanella loihica PV-4 ABC transporter-like protein YP_001095289.1 3767947 R 323850 CDS YP_001095290.1 127514093 4921942 complement(3768665..3769345) 1 NC_009092.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_3054 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 3769345 4921942 Shew_3165 Shewanella loihica PV-4 polar amino acid ABC transporter inner membrane subunit YP_001095290.1 3768665 R 323850 CDS YP_001095291.1 127514094 4921943 complement(3769352..3770080) 1 NC_009092.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 3770080 4921943 Shew_3166 Shewanella loihica PV-4 extracellular solute-binding protein YP_001095291.1 3769352 R 323850 CDS YP_001095292.1 127514095 4921944 3770609..3770854 1 NC_009092.1 KEGG: son:SO3972 hypothetical transposase; hypothetical protein 3770854 4921944 Shew_3167 Shewanella loihica PV-4 hypothetical protein YP_001095292.1 3770609 D 323850 CDS YP_001095293.1 127514096 4921945 3771371..3772087 1 NC_009092.1 PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_0500 protein of unknown function DUF541; hypothetical protein 3772087 4921945 Shew_3168 Shewanella loihica PV-4 hypothetical protein YP_001095293.1 3771371 D 323850 CDS YP_001095294.1 127514097 4921946 3772275..3773273 1 NC_009092.1 KEGG: sfr:Sfri_0588 WD-40 repeat protein; WD-40 repeat-containing protein 3773273 4921946 Shew_3169 Shewanella loihica PV-4 WD-40 repeat-containing protein YP_001095294.1 3772275 D 323850 CDS YP_001095295.1 127514098 4921947 complement(3773303..3774493) 1 NC_009092.1 PFAM: sodium/hydrogen exchanger; KEGG: sfr:Sfri_3583 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3774493 4921947 Shew_3170 Shewanella loihica PV-4 sodium/hydrogen exchanger YP_001095295.1 3773303 R 323850 CDS YP_001095296.1 127514099 4921948 complement(3774643..3775407) 1 NC_009092.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3775407 4921948 Shew_3171 Shewanella loihica PV-4 prolipoprotein diacylglyceryl transferase YP_001095296.1 3774643 R 323850 CDS YP_001095297.1 127514100 4921949 complement(3775635..3776915) 1 NC_009092.1 KEGG: cps:CPS_4664 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; 4-aminobutyrate aminotransferase 3776915 4921949 Shew_3172 Shewanella loihica PV-4 4-aminobutyrate aminotransferase YP_001095297.1 3775635 R 323850 CDS YP_001095298.1 127514101 4921950 complement(3776933..3778390) 1 NC_009092.1 KEGG: cps:CPS_2023 succinate-semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 3778390 4921950 Shew_3173 Shewanella loihica PV-4 succinate-semialdehyde dehydrogenase YP_001095298.1 3776933 R 323850 CDS YP_001095299.1 127514102 4921669 3778538..3779500 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4666 transcriptional regulator, LysR family; LysR family transcriptional regulator 3779500 4921669 Shew_3174 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095299.1 3778538 D 323850 CDS YP_001095300.1 127514103 4921670 complement(3779695..3780957) 1 NC_009092.1 PFAM: outer membrane porin; KEGG: shm:Shewmr7_2788 outer membrane porin; outer membrane porin 3780957 4921670 Shew_3175 Shewanella loihica PV-4 outer membrane porin YP_001095300.1 3779695 R 323850 CDS YP_001095301.1 127514104 4921671 3781321..3782049 1 NC_009092.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sfr:Sfri_3695 regulatory protein GntR, HTH; regulatory protein GntR 3782049 4921671 Shew_3176 Shewanella loihica PV-4 regulatory protein GntR YP_001095301.1 3781321 D 323850 CDS YP_001095302.1 127514105 4921672 complement(3782100..3782624) 1 NC_009092.1 KEGG: son:SO1504 hypothetical protein; hypothetical protein 3782624 4921672 Shew_3177 Shewanella loihica PV-4 hypothetical protein YP_001095302.1 3782100 R 323850 CDS YP_001095303.1 127514106 4921673 3783257..3784588 1 NC_009092.1 PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_0954 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3784588 4921673 Shew_3178 Shewanella loihica PV-4 Na+/H+ antiporter NhaC YP_001095303.1 3783257 D 323850 CDS YP_001095304.1 127514107 4921674 3784744..3785520 1 NC_009092.1 KEGG: shm:Shewmr7_0953 hypothetical protein; hypothetical protein 3785520 4921674 Shew_3179 Shewanella loihica PV-4 hypothetical protein YP_001095304.1 3784744 D 323850 CDS YP_001095305.1 127514108 4921675 3785529..3786245 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0952 pseudouridine synthase, Rsu; pseudouridine synthase 3786245 4921675 Shew_3180 Shewanella loihica PV-4 pseudouridine synthase YP_001095305.1 3785529 D 323850 CDS YP_001095306.1 127514109 4921676 3786798..3788465 1 NC_009092.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3788465 4921676 Shew_3181 Shewanella loihica PV-4 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001095306.1 3786798 D 323850 CDS YP_001095307.1 127514110 4921677 3788532..3788888 1 NC_009092.1 KEGG: sfr:Sfri_3693 hypothetical protein; hypothetical protein 3788888 4921677 Shew_3182 Shewanella loihica PV-4 hypothetical protein YP_001095307.1 3788532 D 323850 CDS YP_001095308.1 127514111 4921678 3789252..3789635 1 NC_009092.1 hypothetical protein 3789635 4921678 Shew_3183 Shewanella loihica PV-4 hypothetical protein YP_001095308.1 3789252 D 323850 CDS YP_001095309.1 127514112 4921679 3790354..3790872 1 NC_009092.1 hypothetical protein 3790872 4921679 Shew_3184 Shewanella loihica PV-4 hypothetical protein YP_001095309.1 3790354 D 323850 CDS YP_001095310.1 127514113 4921680 3791417..3792193 1 NC_009092.1 KEGG: ecs:ECs0400 hypothetical protein; hypothetical protein 3792193 4921680 Shew_3185 Shewanella loihica PV-4 hypothetical protein YP_001095310.1 3791417 D 323850 CDS YP_001095311.1 127514114 4921681 3792254..3793255 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: eca:ECA2247 Arac-family transcriptional regulator; AraC family transcriptional regulator 3793255 4921681 Shew_3186 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001095311.1 3792254 D 323850 CDS YP_001095312.1 127514115 4921682 complement(3793777..3795933) 1 NC_009092.1 KEGG: shm:Shewmr7_0949 hypothetical protein; hypothetical protein 3795933 4921682 Shew_3187 Shewanella loihica PV-4 hypothetical protein YP_001095312.1 3793777 R 323850 CDS YP_001095313.1 127514116 4921578 complement(3796157..3797344) 1 NC_009092.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: sfr:Sfri_0574 aromatic amino acid permease; aromatic amino acid permease 3797344 4921578 Shew_3188 Shewanella loihica PV-4 aromatic amino acid permease YP_001095313.1 3796157 R 323850 CDS YP_001095314.1 127514117 4921579 3797974..3798528 1 NC_009092.1 PFAM: protein of unknown function UPF0016; KEGG: she:Shewmr4_3028 protein of unknown function UPF0016; hypothetical protein 3798528 4921579 Shew_3189 Shewanella loihica PV-4 hypothetical protein YP_001095314.1 3797974 D 323850 CDS YP_001095315.1 127514118 4921580 complement(3798656..3800116) 1 NC_009092.1 PFAM: Catalase domain protein; KEGG: son:SO1070 catalase; catalase 3800116 4921580 Shew_3190 Shewanella loihica PV-4 catalase YP_001095315.1 3798656 R 323850 CDS YP_001095316.1 127514119 4921581 complement(3800828..3801079) 1 NC_009092.1 KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 3801079 4921581 Shew_3191 Shewanella loihica PV-4 hypothetical protein YP_001095316.1 3800828 R 323850 CDS YP_001095317.1 127514120 4921582 complement(3801234..3801683) 1 NC_009092.1 TIGRFAM: uncharacterized domain 1 protein; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0943 uncharacterized domain 1 protein; hypothetical protein 3801683 4921582 Shew_3192 Shewanella loihica PV-4 hypothetical protein YP_001095317.1 3801234 R 323850 CDS YP_001095318.1 127514121 4921583 complement(3802344..3804959) 1 NC_009092.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_3033 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 3804959 4921583 Shew_3193 Shewanella loihica PV-4 endonuclease/exonuclease/phosphatase YP_001095318.1 3802344 R 323850 CDS YP_001095319.1 127514122 4921584 complement(3805624..3806286) 1 NC_009092.1 PFAM: regulatory protein, LuxR; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sdn:Sden_3096 regulatory protein, LuxR; LuxR family transcriptional regulator 3806286 4921584 Shew_3194 Shewanella loihica PV-4 LuxR family transcriptional regulator YP_001095319.1 3805624 R 323850 CDS YP_001095320.1 127514123 4921585 complement(3806545..3807150) 1 NC_009092.1 KEGG: she:Shewmr4_0719 hypothetical protein; hypothetical protein 3807150 4921585 Shew_3195 Shewanella loihica PV-4 hypothetical protein YP_001095320.1 3806545 R 323850 CDS YP_001095321.1 127514124 4921586 3807583..3808812 1 NC_009092.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3808812 4921586 Shew_3196 Shewanella loihica PV-4 D-3-phosphoglycerate dehydrogenase YP_001095321.1 3807583 D 323850 CDS YP_001095322.1 127514125 4921587 3808954..3809496 1 NC_009092.1 hypothetical protein 3809496 4921587 Shew_3197 Shewanella loihica PV-4 hypothetical protein YP_001095322.1 3808954 D 323850 CDS YP_001095323.1 127514126 4921588 3809680..3810648 1 NC_009092.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: she:Shewmr4_0717 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 3810648 4921588 Shew_3198 Shewanella loihica PV-4 glycine cleavage T protein (aminomethyl transferase) YP_001095323.1 3809680 D 323850 CDS YP_001095324.1 127514127 4921589 complement(3810776..3811795) 1 NC_009092.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3306 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 3811795 4921589 Shew_3199 Shewanella loihica PV-4 response regulator receiver modulated metal dependent phosphohydrolase YP_001095324.1 3810776 R 323850 CDS YP_001095325.1 127514128 4921590 complement(3812011..3817317) 1 NC_009092.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3817317 4921590 Shew_3200 Shewanella loihica PV-4 multi-sensor hybrid histidine kinase YP_001095325.1 3812011 R 323850 CDS YP_001095326.1 127514129 4921591 3817906..3818571 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_0713 ABC transporter-related protein; ABC transporter-like protein 3818571 4921591 Shew_3201 Shewanella loihica PV-4 ABC transporter-like protein YP_001095326.1 3817906 D 323850 CDS YP_001095327.1 127514130 4921592 3818564..3821116 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein 3821116 4921592 Shew_3202 Shewanella loihica PV-4 hypothetical protein YP_001095327.1 3818564 D 323850 CDS YP_001095328.1 127514131 4921561 3821113..3822351 1 NC_009092.1 KEGG: she:Shewmr4_0711 hypothetical protein; hypothetical protein 3822351 4921561 Shew_3203 Shewanella loihica PV-4 hypothetical protein YP_001095328.1 3821113 D 323850 CDS YP_001095329.1 127514132 4921562 complement(3822388..3822966) 1 NC_009092.1 PFAM: cytochrome B561; KEGG: she:Shewmr4_0244 cytochrome b561; cytochrome B561 3822966 4921562 Shew_3204 Shewanella loihica PV-4 cytochrome B561 YP_001095329.1 3822388 R 323850 CDS YP_001095330.1 127514133 4921563 3823342..3823611 1 NC_009092.1 PFAM: NapD family protein; KEGG: shm:Shewmr7_3317 NapD family protein; NapD family protein 3823611 4921563 Shew_3205 Shewanella loihica PV-4 NapD family protein YP_001095330.1 3823342 D 323850 CDS YP_001095331.1 127514134 4921564 3823608..3826091 1 NC_009092.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 3826091 4921564 Shew_3206 Shewanella loihica PV-4 nitrate reductase catalytic subunit YP_001095331.1 3823608 D 323850 CDS YP_001095332.1 127514135 4921565 3826150..3826881 1 NC_009092.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 3826881 napG 4921565 napG Shewanella loihica PV-4 quinol dehydrogenase periplasmic component YP_001095332.1 3826150 D 323850 CDS YP_001095333.1 127514136 4921566 3826878..3827777 1 NC_009092.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 3827777 napH 4921566 napH Shewanella loihica PV-4 quinol dehydrogenase membrane component YP_001095333.1 3826878 D 323850 CDS YP_001095334.1 127514137 4921567 3827774..3828196 1 NC_009092.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_3321 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 3828196 4921567 Shew_3209 Shewanella loihica PV-4 nitrate reductase cytochrome c-type subunit YP_001095334.1 3827774 D 323850 CDS YP_001095335.1 127514138 4921568 3828726..3829013 1 NC_009092.1 hypothetical protein 3829013 4921568 Shew_3210 Shewanella loihica PV-4 hypothetical protein YP_001095335.1 3828726 D 323850 CDS YP_001095336.1 127514139 4921569 3829066..3829662 1 NC_009092.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_0196 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 3829662 4921569 Shew_3211 Shewanella loihica PV-4 glutathione S-transferase domain-containing protein YP_001095336.1 3829066 D 323850 CDS YP_001095337.1 127514140 4921570 3829732..3830226 1 NC_009092.1 KEGG: sde:Sde_1847 cell division protein ZipA; cell division protein ZipA 3830226 4921570 Shew_3212 Shewanella loihica PV-4 cell division protein ZipA YP_001095337.1 3829732 D 323850 CDS YP_001095338.1 127514141 4921571 complement(3831854..3832264) 1 NC_009092.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VPA0104 putative ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3832264 4921571 Shew_3213 Shewanella loihica PV-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001095338.1 3831854 R 323850 CDS YP_001095339.1 127514142 4921572 3832483..3832743 1 NC_009092.1 KEGG: she:Shewmr4_2212 hypothetical protein; hypothetical protein 3832743 4921572 Shew_3214 Shewanella loihica PV-4 hypothetical protein YP_001095339.1 3832483 D 323850 CDS YP_001095340.1 127514143 4921573 3832865..3835471 1 NC_009092.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_2232 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 3835471 4921573 Shew_3215 Shewanella loihica PV-4 P-type HAD superfamily ATPase YP_001095340.1 3832865 D 323850 CDS YP_001095341.1 127514144 4921574 complement(3835437..3836336) 1 NC_009092.1 KEGG: sfr:Sfri_2734 hypothetical protein; hypothetical protein 3836336 4921574 Shew_3216 Shewanella loihica PV-4 hypothetical protein YP_001095341.1 3835437 R 323850 CDS YP_001095342.1 127514145 4921541 3836432..3837625 1 NC_009092.1 PFAM: sodium/hydrogen exchanger; KEGG: pcu:pc0094 putative Na(+)/H(+) antiporter; sodium/hydrogen exchanger 3837625 4921541 Shew_3217 Shewanella loihica PV-4 sodium/hydrogen exchanger YP_001095342.1 3836432 D 323850 CDS YP_001095343.1 127514146 4921542 complement(3837701..3842251) 1 NC_009092.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: she:Shewmr4_0696 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L 3842251 4921542 Shew_3218 Shewanella loihica PV-4 carbamoyl-phosphate synthase subunit L YP_001095343.1 3837701 R 323850 CDS YP_001095344.1 127514147 4921543 3842372..3843283 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0695 transcriptional regulator, LysR family; LysR family transcriptional regulator 3843283 4921543 Shew_3219 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095344.1 3842372 D 323850 CDS YP_001095345.1 127514148 4921544 complement(3843326..3844132) 1 NC_009092.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: shm:Shewmr7_3328 beta-lactamase; beta-lactamase 3844132 4921544 Shew_3220 Shewanella loihica PV-4 beta-lactamase YP_001095345.1 3843326 R 323850 CDS YP_001095346.1 127514149 4921545 3844542..3845702 1 NC_009092.1 KEGG: sfr:Sfri_0546 hypothetical protein; hypothetical protein 3845702 4921545 Shew_3221 Shewanella loihica PV-4 hypothetical protein YP_001095346.1 3844542 D 323850 CDS YP_001095347.1 127514150 4921546 3845775..3846386 1 NC_009092.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein 3846386 4921546 Shew_3222 Shewanella loihica PV-4 hypothetical protein YP_001095347.1 3845775 D 323850 CDS YP_001095348.1 127514151 4921547 3846562..3847317 1 NC_009092.1 PFAM: Endonuclease I; KEGG: she:Shewmr4_0691 deoxyribonuclease I; deoxyribonuclease I 3847317 4921547 Shew_3223 Shewanella loihica PV-4 deoxyribonuclease I YP_001095348.1 3846562 D 323850 CDS YP_001095349.1 127514152 4921548 3847321..3848052 1 NC_009092.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3848052 4921548 Shew_3224 Shewanella loihica PV-4 16S ribosomal RNA methyltransferase RsmE YP_001095349.1 3847321 D 323850 CDS YP_001095350.1 127514153 4921549 3848091..3849038 1 NC_009092.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3849038 4921549 Shew_3225 Shewanella loihica PV-4 glutathione synthetase YP_001095350.1 3848091 D 323850 CDS YP_001095351.1 127514154 4921550 3849051..3850682 1 NC_009092.1 PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_0688 alkaline phosphatase; alkaline phosphatase 3850682 4921550 Shew_3226 Shewanella loihica PV-4 alkaline phosphatase YP_001095351.1 3849051 D 323850 CDS YP_001095352.1 127514155 4921551 complement(3850736..3853213) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cps:CPS_0952 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase 3853213 4921551 Shew_3227 Shewanella loihica PV-4 diguanylate cyclase/phosphodiesterase YP_001095352.1 3850736 R 323850 CDS YP_001095353.1 127514156 4921552 complement(3853218..3854414) 1 NC_009092.1 KEGG: net:Neut_1424 conserved hypothetical protein; hypothetical protein 3854414 4921552 Shew_3228 Shewanella loihica PV-4 hypothetical protein YP_001095353.1 3853218 R 323850 CDS YP_001095354.1 127514157 4921553 complement(3854398..3854838) 1 NC_009092.1 KEGG: noc:Noc_1149 hypothetical protein; hypothetical protein 3854838 4921553 Shew_3229 Shewanella loihica PV-4 hypothetical protein YP_001095354.1 3854398 R 323850 CDS YP_001095355.1 127514158 4921554 3855021..3856049 1 NC_009092.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; Methyltransferase small, N-terminal domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3856049 4921554 Shew_3230 Shewanella loihica PV-4 rRNA (guanine-N(2)-)-methyltransferase YP_001095355.1 3855021 D 323850 CDS YP_001095356.1 127514159 4921555 3856235..3857905 1 NC_009092.1 PFAM: protein of unknown function DUF342; KEGG: shm:Shewmr7_0674 protein of unknown function DUF342; hypothetical protein 3857905 4921555 Shew_3231 Shewanella loihica PV-4 hypothetical protein YP_001095356.1 3856235 D 323850 CDS YP_001095357.1 127514160 4921516 3857943..3859121 1 NC_009092.1 PFAM: peptidase M50; KEGG: she:Shewmr4_3275 peptidase M50; peptidase M50 3859121 4921516 Shew_3232 Shewanella loihica PV-4 peptidase M50 YP_001095357.1 3857943 D 323850 CDS YP_001095358.1 127514161 4921517 3859531..3860301 1 NC_009092.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pae:PA1544 transcriptional regulator Anr; Crp/FNR family transcriptional regulator 3860301 4921517 Shew_3233 Shewanella loihica PV-4 Crp/FNR family transcriptional regulator YP_001095358.1 3859531 D 323850 CDS YP_001095359.1 127514162 4921518 complement(3860426..3861277) 1 NC_009092.1 KEGG: cya:CYA_0280 thrombospondin N-terminal-like domain protein; hypothetical protein 3861277 4921518 Shew_3234 Shewanella loihica PV-4 hypothetical protein YP_001095359.1 3860426 R 323850 CDS YP_001095360.1 127514163 4921519 complement(3861274..3862770) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mes:Meso_2223 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3862770 4921519 Shew_3235 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095360.1 3861274 R 323850 CDS YP_001095361.1 127514164 4921520 complement(3862928..3863353) 1 NC_009092.1 hypothetical protein 3863353 4921520 Shew_3236 Shewanella loihica PV-4 hypothetical protein YP_001095361.1 3862928 R 323850 CDS YP_001095362.1 127514165 4921521 complement(3863407..3867945) 1 NC_009092.1 PFAM: Na-Ca exchanger/integrin-beta4; KEGG: aba:Acid345_1066 hypothetical protein; Na-Ca exchanger/integrin-beta4 3867945 4921521 Shew_3237 Shewanella loihica PV-4 Na-Ca exchanger/integrin-beta4 YP_001095362.1 3863407 R 323850 CDS YP_001095363.1 127514166 4921522 complement(3868128..3868778) 1 NC_009092.1 hypothetical protein 3868778 4921522 Shew_3238 Shewanella loihica PV-4 hypothetical protein YP_001095363.1 3868128 R 323850 CDS YP_001095364.1 127514167 4921523 complement(3868848..3873455) 1 NC_009092.1 PFAM: Na-Ca exchanger/integrin-beta4; KEGG: aba:Acid345_1066 hypothetical protein; Na-Ca exchanger/integrin-beta4 3873455 4921523 Shew_3239 Shewanella loihica PV-4 Na-Ca exchanger/integrin-beta4 YP_001095364.1 3868848 R 323850 CDS YP_001095365.1 127514168 4921524 complement(3873857..3874480) 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: dar:Daro_3108 regulatory protein, LuxR:response regulator receiver; two component LuxR family transcriptional regulator 3874480 4921524 Shew_3240 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001095365.1 3873857 R 323850 CDS YP_001095366.1 127514169 4921525 3874687..3876579 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: abo:ABO_2371 TonB-dependent receptor protein; TonB-dependent receptor 3876579 4921525 Shew_3241 Shewanella loihica PV-4 TonB-dependent receptor YP_001095366.1 3874687 D 323850 CDS YP_001095367.1 127514170 4921526 3876957..3877919 1 NC_009092.1 PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_0288 transcriptional regulator, LysR family; LysR family transcriptional regulator 3877919 4921526 Shew_3242 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095367.1 3876957 D 323850 CDS YP_001095368.1 127514171 4921527 complement(3878097..3881171) 1 NC_009092.1 PFAM: molydopterin dinucleotide-binding region; KEGG: ppr:PBPRB1372 hypothetical tetrathionate reductase; molydopterin dinucleotide-binding region 3881171 4921527 Shew_3243 Shewanella loihica PV-4 molydopterin dinucleotide-binding region YP_001095368.1 3878097 R 323850 CDS YP_001095369.1 127514172 4921528 complement(3881176..3881892) 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vpa:VP2011 tetrathionate reductase, subunit B; 4Fe-4S ferredoxin 3881892 4921528 Shew_3244 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001095369.1 3881176 R 323850 CDS YP_001095370.1 127514173 4921529 complement(3881902..3882798) 1 NC_009092.1 PFAM: Polysulphide reductase, NrfD; KEGG: eba:ebA1013 molybdenum enzyme of unknown function, small subunit, membrane anchor; polysulfide reductase, NrfD 3882798 4921529 Shew_3245 Shewanella loihica PV-4 polysulfide reductase, NrfD YP_001095370.1 3881902 R 323850 CDS YP_001095371.1 127514174 4921323 3883355..3884032 1 NC_009092.1 KEGG: sfr:Sfri_3533 hypothetical protein; hypothetical protein 3884032 4921323 Shew_3246 Shewanella loihica PV-4 hypothetical protein YP_001095371.1 3883355 D 323850 CDS YP_001095372.1 127514175 4923662 3884805..3884933 1 NC_009092.1 KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein 3884933 4923662 Shew_3247 Shewanella loihica PV-4 hypothetical protein YP_001095372.1 3884805 D 323850 CDS YP_001095373.1 127514176 4921325 complement(3885066..3885677) 1 NC_009092.1 KEGG: shm:Shewmr7_0765 hypothetical protein; hypothetical protein 3885677 4921325 Shew_3248 Shewanella loihica PV-4 hypothetical protein YP_001095373.1 3885066 R 323850 CDS YP_001095374.1 127514177 4921326 3885907..3887547 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3887547 4921326 Shew_3249 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095374.1 3885907 D 323850 CDS YP_001095375.1 127514178 4921327 complement(3887555..3888784) 1 NC_009092.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3888784 4921327 Shew_3250 Shewanella loihica PV-4 peptidase T YP_001095375.1 3887555 R 323850 CDS YP_001095376.1 127514179 4921328 complement(3888897..3889709) 1 NC_009092.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: she:Shewmr4_3226 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3889709 4921328 Shew_3251 Shewanella loihica PV-4 UBA/THIF-type NAD/FAD binding protein YP_001095376.1 3888897 R 323850 CDS YP_001095377.1 127514180 4921329 3890077..3891135 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3227 outer membrane porin, putative; porin 3891135 4921329 Shew_3252 Shewanella loihica PV-4 porin YP_001095377.1 3890077 D 323850 CDS YP_001095378.1 127514181 4921330 complement(3891249..3891512) 1 NC_009092.1 hypothetical protein 3891512 4921330 Shew_3253 Shewanella loihica PV-4 hypothetical protein YP_001095378.1 3891249 R 323850 CDS YP_001095379.1 127514182 4921331 complement(3891675..3892235) 1 NC_009092.1 KEGG: sde:Sde_1944 cytochrome c family protein; cytochrome c family protein 3892235 4921331 Shew_3254 Shewanella loihica PV-4 cytochrome c family protein YP_001095379.1 3891675 R 323850 CDS YP_001095380.1 127514183 4921332 complement(3892287..3892760) 1 NC_009092.1 KEGG: ddi:DDB0217895 hypothetical protein; hypothetical protein 3892760 4921332 Shew_3255 Shewanella loihica PV-4 hypothetical protein YP_001095380.1 3892287 R 323850 CDS YP_001095381.1 127514184 4921333 complement(3892793..3893749) 1 NC_009092.1 PFAM: copper resistance B precursor; KEGG: pha:PSHAb0010 copper resistance protein B [precursor] (CPx-type copper ATPase); copper resistance B 3893749 4921333 Shew_3256 Shewanella loihica PV-4 copper resistance B YP_001095381.1 3892793 R 323850 CDS YP_001095382.1 127514185 4921334 complement(3893746..3895491) 1 NC_009092.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: sde:Sde_1947 putative copper resistance transmembrane protein; CopA family copper resistance protein 3895491 4921334 Shew_3257 Shewanella loihica PV-4 CopA family copper resistance protein YP_001095382.1 3893746 R 323850 CDS YP_001095383.1 127514186 4921335 3895743..3896459 1 NC_009092.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAb0012 transcriptional activator of copper resistance (two-component regulatory system with CusS); two component heavy metal response transcriptional regulator 3896459 4921335 Shew_3258 Shewanella loihica PV-4 two component heavy metal response transcriptional regulator YP_001095383.1 3895743 D 323850 CDS YP_001095384.1 127514187 4921336 3896461..3897849 1 NC_009092.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sde:Sde_1949 putative 2-component sensor protein; heavy metal sensor signal transduction histidine kinase 3897849 4921336 Shew_3259 Shewanella loihica PV-4 heavy metal sensor signal transduction histidine kinase YP_001095384.1 3896461 D 323850 CDS YP_001095385.1 127514188 4921337 3898387..3899415 1 NC_009092.1 PFAM: porin, Gram-negative type; KEGG: sfr:Sfri_0503 porin, gram-negative type; porin 3899415 4921337 Shew_3260 Shewanella loihica PV-4 porin YP_001095385.1 3898387 D 323850 CDS YP_001095386.1 127514189 4921294 complement(3899524..3900180) 1 NC_009092.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 3900180 4921294 Shew_3261 Shewanella loihica PV-4 thiopurine S-methyltransferase YP_001095386.1 3899524 R 323850 CDS YP_001095387.1 127514190 4921295 complement(3900286..3900630) 1 NC_009092.1 KEGG: shm:Shewmr7_3450 hypothetical protein; hypothetical protein 3900630 4921295 Shew_3262 Shewanella loihica PV-4 hypothetical protein YP_001095387.1 3900286 R 323850 CDS YP_001095388.1 127514191 4921296 3900842..3902677 1 NC_009092.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: she:Shewmr4_0579 serine/threonine protein kinase; serine/threonine protein kinase 3902677 4921296 Shew_3263 Shewanella loihica PV-4 serine/threonine protein kinase YP_001095388.1 3900842 D 323850 CDS YP_001095389.1 127514192 4921297 complement(3902711..3903304) 1 NC_009092.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: shm:Shewmr7_0548 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 3903304 4921297 Shew_3264 Shewanella loihica PV-4 FxsA cytoplasmic membrane protein YP_001095389.1 3902711 R 323850 CDS YP_001095390.1 127514193 4921298 3903830..3904153 1 NC_009092.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: shm:Shewmr7_0547 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 3904153 4921298 Shew_3265 Shewanella loihica PV-4 CutA1 divalent ion tolerance protein YP_001095390.1 3903830 D 323850 CDS YP_001095391.1 127514194 4921299 3904150..3905958 1 NC_009092.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 3905958 dipZ 4921299 dipZ Shewanella loihica PV-4 thiol:disulfide interchange protein YP_001095391.1 3904150 D 323850 CDS YP_001095392.1 127514195 4921300 3906111..3907739 1 NC_009092.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_0545 sodium/hydrogen exchanger; sodium/hydrogen exchanger 3907739 4921300 Shew_3267 Shewanella loihica PV-4 sodium/hydrogen exchanger YP_001095392.1 3906111 D 323850 CDS YP_001095393.1 127514196 4921301 3907833..3908834 1 NC_009092.1 KEGG: eli:ELI_02225 hypothetical protein; hypothetical protein 3908834 4921301 Shew_3268 Shewanella loihica PV-4 hypothetical protein YP_001095393.1 3907833 D 323850 CDS YP_001095394.1 127514197 4921302 3908831..3912061 1 NC_009092.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase; beta-galactosidase 3912061 4921302 Shew_3269 Shewanella loihica PV-4 beta-galactosidase YP_001095394.1 3908831 D 323850 CDS YP_001095395.1 127514198 4921303 3912080..3913504 1 NC_009092.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pat:Patl_3683 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter 3913504 4921303 Shew_3270 Shewanella loihica PV-4 SSS family solute/sodium (Na+) symporter YP_001095395.1 3912080 D 323850 CDS YP_001095396.1 127514199 4921304 3913768..3914934 1 NC_009092.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: she:Shewmr4_3408 galactokinase; galactokinase 3914934 4921304 Shew_3271 Shewanella loihica PV-4 galactokinase YP_001095396.1 3913768 D 323850 CDS YP_001095397.1 127514200 4921305 3915046..3916086 1 NC_009092.1 PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 3916086 4921305 Shew_3272 Shewanella loihica PV-4 aldose 1-epimerase YP_001095397.1 3915046 D 323850 CDS YP_001095398.1 127514201 4921306 complement(3916203..3916637) 1 NC_009092.1 KEGG: she:Shewmr4_3410 hypothetical protein; hypothetical protein 3916637 4921306 Shew_3273 Shewanella loihica PV-4 hypothetical protein YP_001095398.1 3916203 R 323850 CDS YP_001095399.1 127514202 4921307 complement(3916948..3917961) 1 NC_009092.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 3917961 4921307 Shew_3274 Shewanella loihica PV-4 alcohol dehydrogenase YP_001095399.1 3916948 R 323850 CDS YP_001095400.1 127514203 4921111 3918244..3918708 1 NC_009092.1 PFAM: CheC domain protein; KEGG: sfr:Sfri_3344 CheC domain protein; CheC domain-containing protein 3918708 4921111 Shew_3275 Shewanella loihica PV-4 CheC domain-containing protein YP_001095400.1 3918244 D 323850 CDS YP_001095401.1 127514204 4921112 complement(3918735..3920024) 1 NC_009092.1 KEGG: vpa:VP2733 hypothetical protein; hypothetical protein 3920024 4921112 Shew_3276 Shewanella loihica PV-4 hypothetical protein YP_001095401.1 3918735 R 323850 CDS YP_001095402.1 127514205 4921113 complement(3920029..3921105) 1 NC_009092.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3921105 alr 4921113 alr Shewanella loihica PV-4 alanine racemase YP_001095402.1 3920029 R 323850 CDS YP_001095403.1 127514206 4921114 complement(3921215..3922621) 1 NC_009092.1 KEGG: shm:Shewmr7_0692 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 3922621 4921114 Shew_3278 Shewanella loihica PV-4 replicative DNA helicase YP_001095403.1 3921215 R 323850 CDS YP_001095404.1 127514207 4921115 3922738..3924942 1 NC_009092.1 KEGG: shm:Shewmr7_0691 hypothetical protein; hypothetical protein 3924942 4921115 Shew_3279 Shewanella loihica PV-4 hypothetical protein YP_001095404.1 3922738 D 323850 CDS YP_001095405.1 127514208 4921116 3925049..3925486 1 NC_009092.1 hypothetical protein 3925486 4921116 Shew_3280 Shewanella loihica PV-4 hypothetical protein YP_001095405.1 3925049 D 323850 CDS YP_001095406.1 127514209 4921117 complement(3925564..3926016) 1 NC_009092.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3926016 rplI 4921117 rplI Shewanella loihica PV-4 50S ribosomal protein L9 YP_001095406.1 3925564 R 323850 CDS YP_001095407.1 127514210 4921118 complement(3926044..3926271) 1 NC_009092.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3926271 rpsR 4921118 rpsR Shewanella loihica PV-4 30S ribosomal protein S18 YP_001095407.1 3926044 R 323850 CDS YP_001095408.1 127514211 4921119 complement(3926284..3926502) 1 NC_009092.1 KEGG: sdn:Sden_0516 single-strand binding protein/primosomal replication protein N; single-strand binding protein/primosomal replication protein N 3926502 4921119 Shew_3283 Shewanella loihica PV-4 single-strand binding protein/primosomal replication protein N YP_001095408.1 3926284 R 323850 CDS YP_001095409.1 127514212 4921120 complement(3926598..3927005) 1 NC_009092.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3927005 rpsF 4921120 rpsF Shewanella loihica PV-4 30S ribosomal protein S6 YP_001095409.1 3926598 R 323850 CDS YP_001095410.1 127514213 4921121 3927228..3927971 1 NC_009092.1 PFAM: protein of unknown function DUF481; KEGG: she:Shewmr4_3261 protein of unknown function DUF481; hypothetical protein 3927971 4921121 Shew_3285 Shewanella loihica PV-4 hypothetical protein YP_001095410.1 3927228 D 323850 CDS YP_001095411.1 127514214 4921122 complement(3928777..3929334) 1 NC_009092.1 hypothetical protein 3929334 4921122 Shew_3286 Shewanella loihica PV-4 hypothetical protein YP_001095411.1 3928777 R 323850 CDS YP_001095412.1 127514215 4921123 complement(3929466..3929801) 1 NC_009092.1 hypothetical protein 3929801 4921123 Shew_3287 Shewanella loihica PV-4 hypothetical protein YP_001095412.1 3929466 R 323850 CDS YP_001095413.1 127514216 4921124 complement(3930840..3931580) 1 NC_009092.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 3931580 4921124 Shew_3288 Shewanella loihica PV-4 23S rRNA (guanosine-2'-O-)-methyltransferase YP_001095413.1 3930840 R 323850 CDS YP_001095414.1 127514217 4921125 complement(3931595..3934069) 1 NC_009092.1 KEGG: she:Shewmr4_3264 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 3934069 4921125 Shew_3289 Shewanella loihica PV-4 ribonuclease R YP_001095414.1 3931595 R 323850 CDS YP_001095415.1 127514218 4920791 complement(3934127..3934813) 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX; Sel1 domain-containing protein 3934813 4920791 Shew_3290 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001095415.1 3934127 R 323850 CDS YP_001095416.1 127514219 4920792 complement(3935074..3936369) 1 NC_009092.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3936369 4920792 Shew_3291 Shewanella loihica PV-4 adenylosuccinate synthetase YP_001095416.1 3935074 R 323850 CDS YP_001095417.1 127514220 4920793 complement(3936436..3936624) 1 NC_009092.1 KEGG: sdn:Sden_0508 hypothetical protein; hypothetical protein 3936624 4920793 Shew_3292 Shewanella loihica PV-4 hypothetical protein YP_001095417.1 3936436 R 323850 CDS YP_001095418.1 127514221 4920794 complement(3936731..3937123) 1 NC_009092.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3937123 rpsI 4920794 rpsI Shewanella loihica PV-4 30S ribosomal protein S9 YP_001095418.1 3936731 R 323850 CDS YP_001095419.1 127514222 4920795 complement(3937139..3937570) 1 NC_009092.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3937570 rplM 4920795 rplM Shewanella loihica PV-4 50S ribosomal protein L13 YP_001095419.1 3937139 R 323850 CDS YP_001095420.1 127514223 4920796 complement(3937844..3938950) 1 NC_009092.1 PFAM: AFG1-family ATPase; KEGG: sfr:Sfri_3361 AFG1-family ATPase; AFG1 family ATPase 3938950 4920796 Shew_3295 Shewanella loihica PV-4 AFG1 family ATPase YP_001095420.1 3937844 R 323850 CDS YP_001095421.1 127514224 4920797 3939261..3940613 1 NC_009092.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_3271 protease Do; protease Do 3940613 4920797 Shew_3296 Shewanella loihica PV-4 protease Do YP_001095421.1 3939261 D 323850 CDS YP_001095422.1 127514225 4920798 3940751..3941830 1 NC_009092.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS 3941830 4920798 Shew_3297 Shewanella loihica PV-4 periplasmic serine protease DegS YP_001095422.1 3940751 D 323850 CDS YP_001095423.1 127514226 4920799 complement(3942260..3943519) 1 NC_009092.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3943519 4920799 Shew_3298 Shewanella loihica PV-4 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001095423.1 3942260 R 323850 CDS YP_001095424.1 127514227 4920800 complement(3943535..3943786) 1 NC_009092.1 PFAM: BolA family protein; KEGG: shm:Shewmr7_3338 BolA family protein; BolA family protein 3943786 4920800 Shew_3299 Shewanella loihica PV-4 BolA family protein YP_001095424.1 3943535 R 323850 CDS YP_001095425.1 127514228 4920801 complement(3943802..3944095) 1 NC_009092.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: shm:Shewmr7_3339 SpoIIAA family protein; anti-sigma-factor antagonist 3944095 4920801 Shew_3300 Shewanella loihica PV-4 anti-sigma-factor antagonist YP_001095425.1 3943802 R 323850 CDS YP_001095426.1 127514229 4920802 complement(3944095..3944748) 1 NC_009092.1 PFAM: toluene tolerance family protein; KEGG: she:Shewmr4_0682 toluene tolerance family protein; toluene tolerance family protein 3944748 4920802 Shew_3301 Shewanella loihica PV-4 toluene tolerance family protein YP_001095426.1 3944095 R 323850 CDS YP_001095427.1 127514230 4920803 complement(3944760..3945233) 1 NC_009092.1 PFAM: Mammalian cell entry related domain protein; KEGG: shm:Shewmr7_3341 mammalian cell entry related domain protein; hypothetical protein 3945233 4920803 Shew_3302 Shewanella loihica PV-4 hypothetical protein YP_001095427.1 3944760 R 323850 CDS YP_001095428.1 127514231 4920804 complement(3945305..3946090) 1 NC_009092.1 PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein 3946090 4920804 Shew_3303 Shewanella loihica PV-4 hypothetical protein YP_001095428.1 3945305 R 323850 CDS YP_001095429.1 127514232 4923942 complement(3946077..3946955) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3343 ABC transporter-related protein; ABC transporter-like protein 3946955 4923942 Shew_3304 Shewanella loihica PV-4 ABC transporter-like protein YP_001095429.1 3946077 R 323850 CDS YP_001095430.1 127514233 4923943 3947121..3948080 1 NC_009092.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sdn:Sden_0495 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter 3948080 4923943 Shew_3305 Shewanella loihica PV-4 CaCA family Na(+)/Ca(+) antiporter YP_001095430.1 3947121 D 323850 CDS YP_001095431.1 127514234 4923944 3948114..3949091 1 NC_009092.1 KEGG: shm:Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 3949091 4923944 Shew_3306 Shewanella loihica PV-4 KpsF/GutQ family protein YP_001095431.1 3948114 D 323850 CDS YP_001095432.1 127514235 4923945 3949093..3949644 1 NC_009092.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3949644 4923945 Shew_3307 Shewanella loihica PV-4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001095432.1 3949093 D 323850 CDS YP_001095433.1 127514236 4923946 3949641..3950198 1 NC_009092.1 PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein 3950198 4923946 Shew_3308 Shewanella loihica PV-4 hypothetical protein YP_001095433.1 3949641 D 323850 CDS YP_001095434.1 127514237 4923947 3950185..3950730 1 NC_009092.1 PFAM: OstA family protein; KEGG: shm:Shewmr7_3347 OstA family protein; OstA family protein 3950730 4923947 Shew_3309 Shewanella loihica PV-4 OstA family protein YP_001095434.1 3950185 D 323850 CDS YP_001095435.1 127514238 4923948 3950727..3951458 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3348 ABC transporter-related protein; ABC transporter-like protein 3951458 4923948 Shew_3310 Shewanella loihica PV-4 ABC transporter-like protein YP_001095435.1 3950727 D 323850 CDS YP_001095436.1 127514239 4923949 3951593..3953080 1 NC_009092.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3953080 4923949 Shew_3311 Shewanella loihica PV-4 RNA polymerase factor sigma-54 YP_001095436.1 3951593 D 323850 CDS YP_001095437.1 127514240 4923950 3953111..3953398 1 NC_009092.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_3350 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 3953398 4923950 Shew_3312 Shewanella loihica PV-4 sigma 54 modulation protein/ribosomal protein S30EA YP_001095437.1 3953111 D 323850 CDS YP_001095438.1 127514241 4923951 3953401..3953844 1 NC_009092.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: shm:Shewmr7_3351 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 3953844 4923951 Shew_3313 Shewanella loihica PV-4 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001095438.1 3953401 D 323850 CDS YP_001095439.1 127514242 4923952 3953841..3954689 1 NC_009092.1 PFAM: uncharacterized P-loop ATPase protein UPF0042; KEGG: shm:Shewmr7_3352 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein 3954689 4923952 Shew_3314 Shewanella loihica PV-4 hypothetical protein YP_001095439.1 3953841 D 323850 CDS YP_001095440.1 127514243 4923953 3954682..3954957 1 NC_009092.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: she:Shewmr4_0669 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr 3954957 4923953 Shew_3315 Shewanella loihica PV-4 phosphotransferase system, phosphocarrier protein HPr YP_001095440.1 3954682 D 323850 CDS YP_001095441.1 127514244 4923954 3955058..3956425 1 NC_009092.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter 3956425 4923954 Shew_3316 Shewanella loihica PV-4 magnesium transporter YP_001095441.1 3955058 D 323850 CDS YP_001095442.1 127514245 4923955 3956530..3957213 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VP1983 putaive two-component response regulator; two component transcriptional regulator 3957213 4923955 Shew_3317 Shewanella loihica PV-4 two component transcriptional regulator YP_001095442.1 3956530 D 323850 CDS YP_001095443.1 127514246 4923956 3957225..3958487 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VP1984 putative two-component sensor; integral membrane sensor signal transduction histidine kinase 3958487 4923956 Shew_3318 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095443.1 3957225 D 323850 CDS YP_001095444.1 127514247 4924029 3958607..3958855 1 NC_009092.1 hypothetical protein 3958855 4924029 Shew_3319 Shewanella loihica PV-4 hypothetical protein YP_001095444.1 3958607 D 323850 CDS YP_001095445.1 127514248 4924030 complement(3959396..3960985) 1 NC_009092.1 KEGG: cps:CPS_0069 putative FG-GAP repeat lipoprotein; FG-GAP repeat-containing protein 3960985 4924030 Shew_3320 Shewanella loihica PV-4 FG-GAP repeat-containing protein YP_001095445.1 3959396 R 323850 CDS YP_001095446.1 127514249 4924031 complement(3961149..3961922) 1 NC_009092.1 PFAM: protein of unknown function DUF752; KEGG: chu:CHU_0640 hypothetical protein; hypothetical protein 3961922 4924031 Shew_3321 Shewanella loihica PV-4 hypothetical protein YP_001095446.1 3961149 R 323850 CDS YP_001095447.1 127514250 4924032 3962234..3963160 1 NC_009092.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB1503 hypothetical membrane protein; transporter DMT superfamily protein 3963160 4924032 Shew_3322 Shewanella loihica PV-4 transporter DMT superfamily protein YP_001095447.1 3962234 D 323850 CDS YP_001095448.1 127514251 4924033 complement(3963080..3963715) 1 NC_009092.1 KEGG: syn:sll1969 lipase homolog; lipase-like protein 3963715 4924033 Shew_3323 Shewanella loihica PV-4 lipase-like protein YP_001095448.1 3963080 R 323850 CDS YP_001095449.1 127514252 4924034 3963773..3964834 1 NC_009092.1 KEGG: sdn:Sden_3286 hypothetical protein; hypothetical protein 3964834 4924034 Shew_3324 Shewanella loihica PV-4 hypothetical protein YP_001095449.1 3963773 D 323850 CDS YP_001095450.1 127514253 4924035 3965280..3966449 1 NC_009092.1 PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1259 transport protein of the major facilitator; major facilitator superfamily transporter 3966449 4924035 Shew_3325 Shewanella loihica PV-4 major facilitator superfamily transporter YP_001095450.1 3965280 D 323850 CDS YP_001095451.1 127514254 4924036 complement(3966446..3967687) 1 NC_009092.1 PFAM: sodium/hydrogen exchanger; KEGG: hch:HCH_01176 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; sodium/hydrogen exchanger 3967687 4924036 Shew_3326 Shewanella loihica PV-4 sodium/hydrogen exchanger YP_001095451.1 3966446 R 323850 CDS YP_001095452.1 127514255 4924037 complement(3967766..3969211) 1 NC_009092.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: shm:Shewmr7_3492 RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase 3969211 4924037 Shew_3327 Shewanella loihica PV-4 RNA-metabolising metallo-beta-lactamase YP_001095452.1 3967766 R 323850 CDS YP_001095453.1 127514256 4924038 3969688..3972324 1 NC_009092.1 PFAM: Ig domain protein, group 2 domain protein; Kelch repeat-containing protein; KEGG: hch:HCH_00094 cell wall surface anchor family protein; Ig domain-containing protein 3972324 4924038 Shew_3328 Shewanella loihica PV-4 Ig domain-containing protein YP_001095453.1 3969688 D 323850 CDS YP_001095454.1 127514257 4924039 3972575..3974506 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: shm:Shewmr7_3362 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 3974506 4924039 Shew_3329 Shewanella loihica PV-4 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001095454.1 3972575 D 323850 CDS YP_001095455.1 127514258 4924040 3974683..3975888 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase 3975888 4924040 Shew_3330 Shewanella loihica PV-4 diguanylate cyclase YP_001095455.1 3974683 D 323850 CDS YP_001095456.1 127514259 4924041 complement(3975872..3976648) 1 NC_009092.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: sdn:Sden_3444 cyclic nucleotide-binding; Crp/FNR family transcriptional regulator 3976648 4924041 Shew_3331 Shewanella loihica PV-4 Crp/FNR family transcriptional regulator YP_001095456.1 3975872 R 323850 CDS YP_001095457.1 127514260 4924042 complement(3976771..3977223) 1 NC_009092.1 PFAM: protein of unknown function DUF461; KEGG: sdn:Sden_3479 protein of unknown function DUF461; hypothetical protein 3977223 4924042 Shew_3332 Shewanella loihica PV-4 hypothetical protein YP_001095457.1 3976771 R 323850 CDS YP_001095458.1 127514261 4923088 complement(3977244..3977882) 1 NC_009092.1 PFAM: electron transport protein SCO1/SenC; KEGG: sdn:Sden_3480 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3977882 4923088 Shew_3333 Shewanella loihica PV-4 electron transport protein SCO1/SenC YP_001095458.1 3977244 R 323850 CDS YP_001095459.1 127514262 4923089 complement(3977898..3978734) 1 NC_009092.1 KEGG: sdn:Sden_3481 hypothetical protein; hypothetical protein 3978734 4923089 Shew_3334 Shewanella loihica PV-4 hypothetical protein YP_001095459.1 3977898 R 323850 CDS YP_001095460.1 127514263 4923090 complement(3978835..3980013) 1 NC_009092.1 KEGG: sdn:Sden_3482 nitrite reductase, copper containing; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; nitrite reductase 3980013 4923090 Shew_3335 Shewanella loihica PV-4 nitrite reductase YP_001095460.1 3978835 R 323850 CDS YP_001095461.1 127514264 4923091 complement(3980421..3980921) 1 NC_009092.1 PFAM: regulatory protein, MarR; KEGG: sfr:Sfri_3643 transcriptional regulator, MarR family protein; MarR family transcriptional regulator 3980921 4923091 Shew_3336 Shewanella loihica PV-4 MarR family transcriptional regulator YP_001095461.1 3980421 R 323850 CDS YP_001095462.1 127514265 4923092 3981099..3981995 1 NC_009092.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sfr:Sfri_3644 protein of unknown function DUF6, transmembrane; hypothetical protein 3981995 4923092 Shew_3337 Shewanella loihica PV-4 hypothetical protein YP_001095462.1 3981099 D 323850 CDS YP_001095463.1 127514266 4923093 3982084..3982293 1 NC_009092.1 PFAM: TOBE domain protein; KEGG: she:Shewmr4_2490 molybdenum-pterin binding; TOBE domain-containing protein 3982293 4923093 Shew_3338 Shewanella loihica PV-4 TOBE domain-containing protein YP_001095463.1 3982084 D 323850 CDS YP_001095464.1 127514267 4923094 complement(3982465..3982839) 1 NC_009092.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: hch:HCH_10005 hypothetical protein; glutathione-dependent formaldehyde-activating protein 3982839 4923094 Shew_3339 Shewanella loihica PV-4 glutathione-dependent formaldehyde-activating protein YP_001095464.1 3982465 R 323850 CDS YP_001095465.1 127514268 4923095 3983615..3985672 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0484 TonB-dependent receptor; TonB-dependent receptor 3985672 4923095 Shew_3340 Shewanella loihica PV-4 TonB-dependent receptor YP_001095465.1 3983615 D 323850 CDS YP_001095466.1 127514269 4923096 complement(3985748..3986728) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: vfi:VF2362 GGDEF family protein; GAF sensor-containing diguanylate cyclase 3986728 4923096 Shew_3341 Shewanella loihica PV-4 GAF sensor-containing diguanylate cyclase YP_001095466.1 3985748 R 323850 CDS YP_001095467.1 127514270 4923097 complement(3986929..3987465) 1 NC_009092.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: she:Shewmr4_3529 response regulator receiver protein; two component Fis family transcriptional regulator 3987465 4923097 Shew_3342 Shewanella loihica PV-4 two component Fis family transcriptional regulator YP_001095467.1 3986929 R 323850 CDS YP_001095468.1 127514271 4923098 complement(3987462..3988709) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3530 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3988709 4923098 Shew_3343 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095468.1 3987462 R 323850 CDS YP_001095469.1 127514272 4923099 complement(3988719..3989642) 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_0424 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3989642 4923099 Shew_3344 Shewanella loihica PV-4 dTDP-4-dehydrorhamnose reductase YP_001095469.1 3988719 R 323850 CDS YP_001095470.1 127514273 4923100 complement(3989642..3990565) 1 NC_009092.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 3990565 4923100 Shew_3345 Shewanella loihica PV-4 lipid kinase YP_001095470.1 3989642 R 323850 CDS YP_001095471.1 127514274 4923101 3990767..3991450 1 NC_009092.1 KEGG: shm:Shewmr7_0108 hypothetical protein; hypothetical protein 3991450 4923101 Shew_3346 Shewanella loihica PV-4 hypothetical protein YP_001095471.1 3990767 D 323850 CDS YP_001095472.1 127514275 4923102 3991453..3993333 1 NC_009092.1 KEGG: she:Shewmr4_3532 hypothetical protein; hypothetical protein 3993333 4923102 Shew_3347 Shewanella loihica PV-4 hypothetical protein YP_001095472.1 3991453 D 323850 CDS YP_001095473.1 127514276 4922189 complement(3993368..3994309) 1 NC_009092.1 PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0418 pseudouridine synthase; pseudouridine synthase 3994309 4922189 Shew_3348 Shewanella loihica PV-4 pseudouridine synthase YP_001095473.1 3993368 R 323850 CDS YP_001095474.1 127514277 4922190 complement(3994343..3994921) 1 NC_009092.1 KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 3994921 4922190 Shew_3349 Shewanella loihica PV-4 ATP-dependent protease La YP_001095474.1 3994343 R 323850 CDS YP_001095475.1 127514278 4922191 complement(3995132..3996187) 1 NC_009092.1 KEGG: shm:Shewmr7_0416 hypothetical protein; hypothetical protein 3996187 4922191 Shew_3350 Shewanella loihica PV-4 hypothetical protein YP_001095475.1 3995132 R 323850 CDS YP_001095476.1 127514279 4922192 3996305..3996745 1 NC_009092.1 hypothetical protein 3996745 4922192 Shew_3351 Shewanella loihica PV-4 hypothetical protein YP_001095476.1 3996305 D 323850 CDS YP_001095477.1 127514280 4922193 3996816..3997832 1 NC_009092.1 KEGG: pha:PSHAa1736 hypothetical protein; hypothetical protein 3997832 4922193 Shew_3352 Shewanella loihica PV-4 hypothetical protein YP_001095477.1 3996816 D 323850 CDS YP_001095478.1 127514281 4922194 3997922..3998383 1 NC_009092.1 PFAM: conserved hypothetical protein 22; KEGG: sfr:Sfri_3560 conserved hypothetical protein 22; hypothetical protein 3998383 4922194 Shew_3353 Shewanella loihica PV-4 hypothetical protein YP_001095478.1 3997922 D 323850 CDS YP_001095479.1 127514282 4922195 3998747..4001026 1 NC_009092.1 PFAM: aminotransferase, class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: cps:CPS_0838 aminotransferase, class V; class V aminotransferase 4001026 4922195 Shew_3354 Shewanella loihica PV-4 class V aminotransferase YP_001095479.1 3998747 D 323850 CDS YP_001095480.1 127514283 4922196 complement(4001107..4002327) 1 NC_009092.1 KEGG: cps:CPS_3938 hypothetical protein; hypothetical protein 4002327 4922196 Shew_3355 Shewanella loihica PV-4 hypothetical protein YP_001095480.1 4001107 R 323850 CDS YP_001095481.1 127514284 4922197 complement(4003102..4006332) 1 NC_009092.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3513 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4006332 4922197 Shew_3356 Shewanella loihica PV-4 CzcA family heavy metal efflux protein YP_001095481.1 4003102 R 323850 CDS YP_001095482.1 127514285 4922198 complement(4006345..4007574) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sdn:Sden_0575 secretion protein HlyD; RND family efflux transporter MFP subunit 4007574 4922198 Shew_3357 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001095482.1 4006345 R 323850 CDS YP_001095483.1 127514286 4922199 complement(4007656..4008936) 1 NC_009092.1 KEGG: son:SO0518 outer membrane efflux family protein, putative; outer membrane efflux family protein 4008936 4922199 Shew_3358 Shewanella loihica PV-4 outer membrane efflux family protein YP_001095483.1 4007656 R 323850 CDS YP_001095484.1 127514287 4922200 complement(4009148..4009579) 1 NC_009092.1 KEGG: sfr:Sfri_3589 hypothetical protein; hypothetical protein 4009579 4922200 Shew_3359 Shewanella loihica PV-4 hypothetical protein YP_001095484.1 4009148 R 323850 CDS YP_001095485.1 127514288 4922201 complement(4009720..4009902) 1 NC_009092.1 KEGG: shm:Shewmr7_3517 hypothetical protein; hypothetical protein 4009902 4922201 Shew_3360 Shewanella loihica PV-4 hypothetical protein YP_001095485.1 4009720 R 323850 CDS YP_001095486.1 127514289 4922202 complement(4009952..4010335) 1 NC_009092.1 KEGG: sdn:Sden_3283 hypothetical protein; hypothetical protein 4010335 4922202 Shew_3361 Shewanella loihica PV-4 hypothetical protein YP_001095486.1 4009952 R 323850 CDS YP_001095487.1 127514290 4922203 4010448..4010858 1 NC_009092.1 PFAM: Class I peptide chain release factor; KEGG: shm:Shewmr7_3519 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 4010858 4922203 Shew_3362 Shewanella loihica PV-4 peptidyl-tRNA hydrolase domain-containing protein YP_001095487.1 4010448 D 323850 CDS YP_001095488.1 127514291 4924206 4010975..4011427 1 NC_009092.1 KEGG: sdn:Sden_3285 3-dehydroquinate dehydratase, type II; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II; 3-dehydroquinate dehydratase 4011427 4924206 Shew_3363 Shewanella loihica PV-4 3-dehydroquinate dehydratase YP_001095488.1 4010975 D 323850 CDS YP_001095489.1 127514292 4924207 4011434..4011865 1 NC_009092.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: plu:plu4074 biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP); acetyl-CoA carboxylase, biotin carboxyl carrier protein 4011865 4924207 Shew_3364 Shewanella loihica PV-4 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001095489.1 4011434 D 323850 CDS YP_001095490.1 127514293 4924208 4011906..4013258 1 NC_009092.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pmu:PM1091 biotin carboxylase, a subunit; acetyl-CoA carboxylase, biotin carboxylase 4013258 4924208 Shew_3365 Shewanella loihica PV-4 acetyl-CoA carboxylase, biotin carboxylase YP_001095490.1 4011906 D 323850 CDS YP_001095491.1 127514294 4924209 complement(4013329..4016526) 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; SMART: extracellular solute-binding protein, family 3; metal-dependent phosphohydrolase, HD region; KEGG: vvy:VV1527 hypothetical protein; metal dependent phosphohydrolase 4016526 4924209 Shew_3366 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001095491.1 4013329 R 323850 CDS YP_001095492.1 127514295 4924210 complement(4016607..4017659) 1 NC_009092.1 KEGG: sfr:Sfri_0480 hypothetical protein; hypothetical protein 4017659 4924210 Shew_3367 Shewanella loihica PV-4 hypothetical protein YP_001095492.1 4016607 R 323850 CDS YP_001095493.1 127514296 4924211 complement(4017685..4018215) 1 NC_009092.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase 4018215 4924211 Shew_3368 Shewanella loihica PV-4 PA-phosphatase-like phosphoesterase YP_001095493.1 4017685 R 323850 CDS YP_001095494.1 127514297 4924212 complement(4018320..4018574) 1 NC_009092.1 KEGG: shm:Shewmr7_0408 hypothetical protein; hypothetical protein 4018574 4924212 Shew_3369 Shewanella loihica PV-4 hypothetical protein YP_001095494.1 4018320 R 323850 CDS YP_001095495.1 127514298 4924213 4018911..4019396 1 NC_009092.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4019396 4924213 Shew_3370 Shewanella loihica PV-4 ribonuclease activity regulator protein RraA YP_001095495.1 4018911 D 323850 CDS YP_001095496.1 127514299 4924214 complement(4019944..4020363) 1 NC_009092.1 hypothetical protein 4020363 4924214 Shew_3371 Shewanella loihica PV-4 hypothetical protein YP_001095496.1 4019944 R 323850 CDS YP_001095497.1 127514300 4924215 4021340..4022383 1 NC_009092.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: she:Shewmr4_3550 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 4022383 4924215 Shew_3372 Shewanella loihica PV-4 arginase/agmatinase/formiminoglutamase YP_001095497.1 4021340 D 323850 CDS YP_001095498.1 127514301 4924216 4022609..4023364 1 NC_009092.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0405 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase 4023364 4924216 Shew_3373 Shewanella loihica PV-4 ubiquinone/menaquinone biosynthesis methyltransferase YP_001095498.1 4022609 D 323850 CDS YP_001095499.1 127514302 4924217 4023585..4024208 1 NC_009092.1 PFAM: protein of unknown function DUF1243; KEGG: she:Shewmr4_3552 protein of unknown function DUF1243; hypothetical protein 4024208 4924217 Shew_3374 Shewanella loihica PV-4 hypothetical protein YP_001095499.1 4023585 D 323850 CDS YP_001095500.1 127514303 4924218 4024205..4025854 1 NC_009092.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: shm:Shewmr7_0403 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 4025854 4924218 Shew_3375 Shewanella loihica PV-4 2-polyprenylphenol 6-hydroxylase YP_001095500.1 4024205 D 323850 CDS YP_001095501.1 127514304 4924219 4025915..4026145 1 NC_009092.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sdn:Sden_0458 twin-arginine translocation protein, TatA/E family; twin arginine-targeting protein translocase 4026145 4924219 Shew_3376 Shewanella loihica PV-4 twin arginine-targeting protein translocase YP_001095501.1 4025915 D 323850 CDS YP_001095502.1 127514305 4923917 4026152..4026550 1 NC_009092.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shm:Shewmr7_0401 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 4026550 4923917 Shew_3377 Shewanella loihica PV-4 twin-arginine translocation protein subunit TatB YP_001095502.1 4026152 D 323850 CDS YP_001095503.1 127514306 4923918 4026554..4027309 1 NC_009092.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sfr:Sfri_0470 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4027309 4923918 Shew_3378 Shewanella loihica PV-4 Sec-independent protein translocase subunit TatC YP_001095503.1 4026554 D 323850 CDS YP_001095504.1 127514307 4923919 4027421..4027960 1 NC_009092.1 KEGG: she:Shewmr4_3557 hypothetical protein; hypothetical protein 4027960 4923919 Shew_3379 Shewanella loihica PV-4 hypothetical protein YP_001095504.1 4027421 D 323850 CDS YP_001095505.1 127514308 4923920 4027960..4028769 1 NC_009092.1 PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 4028769 4923920 Shew_3380 Shewanella loihica PV-4 TatD-related deoxyribonuclease YP_001095505.1 4027960 D 323850 CDS YP_001095506.1 127514309 4923921 4028756..4030624 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 4030624 4923921 Shew_3381 Shewanella loihica PV-4 diguanylate cyclase YP_001095506.1 4028756 D 323850 CDS YP_001095507.1 127514310 4923922 4030716..4031732 1 NC_009092.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4031732 4923922 Shew_3382 Shewanella loihica PV-4 delta-aminolevulinic acid dehydratase YP_001095507.1 4030716 D 323850 CDS YP_001095508.1 127514311 4923923 complement(4031812..4032372) 1 NC_009092.1 hypothetical protein 4032372 4923923 Shew_3383 Shewanella loihica PV-4 hypothetical protein YP_001095508.1 4031812 R 323850 CDS YP_001095509.1 127514312 4923924 complement(4032598..4033458) 1 NC_009092.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4033458 ubiA 4923924 ubiA Shewanella loihica PV-4 4-hydroxybenzoate octaprenyltransferase YP_001095509.1 4032598 R 323850 CDS YP_001095510.1 127514313 4923925 complement(4033576..4035756) 1 NC_009092.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4035756 uvrD 4923925 uvrD Shewanella loihica PV-4 DNA-dependent helicase II YP_001095510.1 4033576 R 323850 CDS YP_001095511.1 127514314 4923926 complement(4035929..4036864) 1 NC_009092.1 PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein 4036864 4923926 Shew_3386 Shewanella loihica PV-4 hypothetical protein YP_001095511.1 4035929 R 323850 CDS YP_001095512.1 127514315 4923927 complement(4036861..4037787) 1 NC_009092.1 PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein 4037787 4923927 Shew_3387 Shewanella loihica PV-4 hypothetical protein YP_001095512.1 4036861 R 323850 CDS YP_001095513.1 127514316 4923928 complement(4037817..4038278) 1 NC_009092.1 PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein; hypothetical protein 4038278 4923928 Shew_3388 Shewanella loihica PV-4 hypothetical protein YP_001095513.1 4037817 R 323850 CDS YP_001095514.1 127514317 4923929 4038577..4039332 1 NC_009092.1 KEGG: sfr:Sfri_3402 hypothetical protein; hypothetical protein 4039332 4923929 Shew_3389 Shewanella loihica PV-4 hypothetical protein YP_001095514.1 4038577 D 323850 CDS YP_001095515.1 127514318 4923930 complement(4039409..4040167) 1 NC_009092.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4040167 4923930 Shew_3390 Shewanella loihica PV-4 uridine phosphorylase YP_001095515.1 4039409 R 323850 CDS YP_001095516.1 127514319 4923931 4040611..4040826 1 NC_009092.1 PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein 4040826 4923931 Shew_3391 Shewanella loihica PV-4 hypothetical protein YP_001095516.1 4040611 D 323850 CDS YP_001095517.1 127514320 4923695 complement(4040893..4042068) 1 NC_009092.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_0445 diaminopimelate decarboxylase; ornithine decarboxylase 4042068 4923695 Shew_3392 Shewanella loihica PV-4 ornithine decarboxylase YP_001095517.1 4040893 R 323850 CDS YP_001095518.1 127514321 4923696 complement(4042292..4042747) 1 NC_009092.1 KEGG: son:SO4138 hypothetical protein; hypothetical protein 4042747 4923696 Shew_3393 Shewanella loihica PV-4 hypothetical protein YP_001095518.1 4042292 R 323850 CDS YP_001095519.1 127514322 4923697 4042979..4043812 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0443 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4043812 4923697 Shew_3394 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001095519.1 4042979 D 323850 CDS YP_001095520.1 127514323 4923698 complement(4043855..4044733) 1 NC_009092.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: shm:Shewmr7_3501 radical SAM domain protein; radical SAM domain-containing protein 4044733 4923698 Shew_3395 Shewanella loihica PV-4 radical SAM domain-containing protein YP_001095520.1 4043855 R 323850 CDS YP_001095521.1 127514324 4923699 4044903..4045205 1 NC_009092.1 KEGG: sfr:Sfri_3497 hypothetical protein; hypothetical protein 4045205 4923699 Shew_3396 Shewanella loihica PV-4 hypothetical protein YP_001095521.1 4044903 D 323850 CDS YP_001095522.1 127514325 4923700 complement(4045361..4045831) 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_0501 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4045831 4923700 Shew_3397 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001095522.1 4045361 R 323850 CDS YP_001095523.1 127514326 4923701 4046198..4046494 1 NC_009092.1 PFAM: cytochrome c, class I; KEGG: sdn:Sden_1464 cytochrome c, class I; cytochrome c, class I 4046494 4923701 Shew_3398 Shewanella loihica PV-4 cytochrome c, class I YP_001095523.1 4046198 D 323850 CDS YP_001095524.1 127514327 4923702 4046792..4048933 1 NC_009092.1 PFAM: FMN-binding domain protein; KEGG: ppr:PBPRB0846 hypothetical NosR, regulator of nitric oxide reductase transcription; FMN-binding domain-containing protein 4048933 4923702 Shew_3399 Shewanella loihica PV-4 FMN-binding domain-containing protein YP_001095524.1 4046792 D 323850 CDS YP_001095525.1 127514328 4923703 4048986..4050872 1 NC_009092.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 4050872 4923703 Shew_3400 Shewanella loihica PV-4 nitrous-oxide reductase YP_001095525.1 4048986 D 323850 CDS YP_001095526.1 127514329 4923704 4051047..4052420 1 NC_009092.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sdn:Sden_2218 periplasmic copper-binding; periplasmic copper-binding protein 4052420 4923704 Shew_3401 Shewanella loihica PV-4 periplasmic copper-binding protein YP_001095526.1 4051047 D 323850 CDS YP_001095527.1 127514330 4923705 4052425..4053393 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sdn:Sden_2217 ABC transporter-related protein; ABC transporter-like protein 4053393 4923705 Shew_3402 Shewanella loihica PV-4 ABC transporter-like protein YP_001095527.1 4052425 D 323850 CDS YP_001095528.1 127514331 4923706 4053390..4054208 1 NC_009092.1 PFAM: ABC-2 type transporter; KEGG: ppr:PBPRB0850 hypothetical nitrous oxide metabolic protein; ABC transporter 4054208 4923706 Shew_3403 Shewanella loihica PV-4 ABC transporter YP_001095528.1 4053390 D 323850 CDS YP_001095529.1 127514332 4923707 4054208..4054729 1 NC_009092.1 PFAM: NosL family protein; KEGG: ppr:PBPRB0851 hypothetical NosL protein; NosL family protein 4054729 4923707 Shew_3404 Shewanella loihica PV-4 NosL family protein YP_001095529.1 4054208 D 323850 CDS YP_001095530.1 127514333 4923708 complement(4054776..4056392) 1 NC_009092.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA family drug resistance transporter 4056392 4923708 Shew_3405 Shewanella loihica PV-4 EmrB/QacA family drug resistance transporter YP_001095530.1 4054776 R 323850 CDS YP_001095531.1 127514334 4923560 complement(4056389..4057465) 1 NC_009092.1 PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3509 secretion protein HlyD family protein; secretion protein HlyD family protein 4057465 4923560 Shew_3406 Shewanella loihica PV-4 secretion protein HlyD family protein YP_001095531.1 4056389 R 323850 CDS YP_001095532.1 127514335 4923561 4057576..4058511 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family; LysR family transcriptional regulator 4058511 4923561 Shew_3407 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095532.1 4057576 D 323850 CDS YP_001095533.1 127514336 4923562 4058620..4059345 1 NC_009092.1 PFAM: protein of unknown function DUF28; KEGG: sfr:Sfri_1086 protein of unknown function DUF28; hypothetical protein 4059345 4923562 Shew_3408 Shewanella loihica PV-4 hypothetical protein YP_001095533.1 4058620 D 323850 CDS YP_001095534.1 127514337 4923563 4059737..4060768 1 NC_009092.1 KEGG: she:Shewmr4_3064 putative lipoprotein; putative lipoprotein 4060768 4923563 Shew_3409 Shewanella loihica PV-4 putative lipoprotein YP_001095534.1 4059737 D 323850 CDS YP_001095535.1 127514338 4923564 complement(4060864..4062288) 1 NC_009092.1 PFAM: permease; KEGG: she:Shewmr4_0447 permease; permease 4062288 4923564 Shew_3410 Shewanella loihica PV-4 permease YP_001095535.1 4060864 R 323850 CDS YP_001095536.1 127514339 4923565 complement(4062292..4062768) 1 NC_009092.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 4062768 zntR 4923565 zntR Shewanella loihica PV-4 zinc-responsive transcriptional regulator YP_001095536.1 4062292 R 323850 CDS YP_001095537.1 127514340 4923566 4063067..4064656 1 NC_009092.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4064656 purH 4923566 purH Shewanella loihica PV-4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001095537.1 4063067 D 323850 CDS YP_001095538.1 127514341 4923567 4064708..4066009 1 NC_009092.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4066009 4923567 Shew_3413 Shewanella loihica PV-4 phosphoribosylamine--glycine ligase YP_001095538.1 4064708 D 323850 CDS YP_001095539.1 127514342 4923568 4066298..4069300 1 NC_009092.1 KEGG: vpa:VP0948 hypothetical protein; hypothetical protein 4069300 4923568 Shew_3414 Shewanella loihica PV-4 hypothetical protein YP_001095539.1 4066298 D 323850 CDS YP_001095540.1 127514343 4923569 complement(4069409..4070215) 1 NC_009092.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_3588 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 4070215 4923569 Shew_3415 Shewanella loihica PV-4 short chain dehydrogenase YP_001095540.1 4069409 R 323850 CDS YP_001095541.1 127514344 4923570 complement(4070305..4072878) 1 NC_009092.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; KEGG: son:SO0437 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4072878 4923570 Shew_3416 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001095541.1 4070305 R 323850 CDS YP_001095542.1 127514345 4923571 4073181..4073903 1 NC_009092.1 KEGG: sfr:Sfri_0487 hypothetical protein; hypothetical protein 4073903 4923571 Shew_3417 Shewanella loihica PV-4 hypothetical protein YP_001095542.1 4073181 D 323850 CDS YP_001095543.1 127514346 4923572 4073913..4074641 1 NC_009092.1 KEGG: shm:Shewmr7_0668 hypothetical protein; hypothetical protein 4074641 4923572 Shew_3418 Shewanella loihica PV-4 hypothetical protein YP_001095543.1 4073913 D 323850 CDS YP_001095544.1 127514347 4923573 4074739..4075467 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0485 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator 4075467 4923573 Shew_3419 Shewanella loihica PV-4 two component transcriptional regulator YP_001095544.1 4074739 D 323850 CDS YP_001095545.1 127514348 4923574 4075470..4076951 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sfr:Sfri_0484 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4076951 4923574 Shew_3420 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095545.1 4075470 D 323850 CDS YP_001095546.1 127514349 4923501 complement(4076960..4077235) 1 NC_009092.1 hypothetical protein 4077235 4923501 Shew_3421 Shewanella loihica PV-4 hypothetical protein YP_001095546.1 4076960 R 323850 CDS YP_001095547.1 127514350 4923502 complement(4077352..4078416) 1 NC_009092.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4078416 hemE 4923502 hemE Shewanella loihica PV-4 uroporphyrinogen decarboxylase YP_001095547.1 4077352 R 323850 CDS YP_001095548.1 127514351 4923503 4078894..4079364 1 NC_009092.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4079364 4923503 Shew_3423 Shewanella loihica PV-4 anti-RNA polymerase sigma 70 factor YP_001095548.1 4078894 D 323850 CDS YP_001095549.1 127514352 4923504 complement(4079474..4082071) 1 NC_009092.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 4082071 4923504 Shew_3424 Shewanella loihica PV-4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001095549.1 4079474 R 323850 CDS YP_001095550.1 127514353 4923505 4082485..4083156 1 NC_009092.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 4083156 4923505 Shew_3425 Shewanella loihica PV-4 2-deoxyglucose-6-phosphatase YP_001095550.1 4082485 D 323850 CDS YP_001095551.1 127514354 4923506 complement(4083244..4085298) 1 NC_009092.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_0433 endothelin-converting enzyme 1; endothelin-converting protein 1 4085298 4923506 Shew_3426 Shewanella loihica PV-4 endothelin-converting protein 1 YP_001095551.1 4083244 R 323850 CDS YP_001095552.1 127514355 4923507 complement(4085430..4087643) 1 NC_009092.1 PFAM: Patatin; KEGG: she:Shewmr4_0432 patatin; patatin 4087643 4923507 Shew_3427 Shewanella loihica PV-4 patatin YP_001095552.1 4085430 R 323850 CDS YP_001095553.1 127514356 4923508 complement(4087739..4092193) 1 NC_009092.1 KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4092193 4923508 Shew_3428 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001095553.1 4087739 R 323850 CDS YP_001095554.1 127514357 4923509 complement(4092336..4093763) 1 NC_009092.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4093763 4923509 Shew_3429 Shewanella loihica PV-4 dihydrolipoamide dehydrogenase YP_001095554.1 4092336 R 323850 CDS YP_001095555.1 127514358 4923510 complement(4093917..4095869) 1 NC_009092.1 KEGG: shm:Shewmr7_3598 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 4095869 4923510 Shew_3430 Shewanella loihica PV-4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_001095555.1 4093917 R 323850 CDS YP_001095556.1 127514359 4923511 complement(4095881..4098547) 1 NC_009092.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 4098547 aceE 4923511 aceE Shewanella loihica PV-4 pyruvate dehydrogenase subunit E1 YP_001095556.1 4095881 R 323850 CDS YP_001095557.1 127514360 4923512 complement(4098617..4099369) 1 NC_009092.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 4099369 pdhR 4923512 pdhR Shewanella loihica PV-4 transcriptional regulator PdhR YP_001095557.1 4098617 R 323850 CDS YP_001095558.1 127514361 4923513 complement(4099608..4100459) 1 NC_009092.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 4100459 4923513 Shew_3433 Shewanella loihica PV-4 regulatory protein AmpE YP_001095558.1 4099608 R 323850 CDS YP_001095559.1 127514362 4923514 complement(4100522..4101076) 1 NC_009092.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sfr:Sfri_3780 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 4101076 4923514 Shew_3434 Shewanella loihica PV-4 N-acetyl-anhydromuranmyl-L-alanine amidase YP_001095559.1 4100522 R 323850 CDS YP_001095560.1 127514363 4923449 4101353..4102234 1 NC_009092.1 KEGG: shm:Shewmr7_3603 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 4102234 4923449 Shew_3435 Shewanella loihica PV-4 nicotinate-nucleotide pyrophosphorylase YP_001095560.1 4101353 D 323850 CDS YP_001095561.1 127514364 4923450 4103142..4103495 1 NC_009092.1 KEGG: she:Shewmr4_0422 methylation site containing protein; methylation site containing protein 4103495 4923450 Shew_3436 Shewanella loihica PV-4 methylation site containing protein YP_001095561.1 4103142 D 323850 CDS YP_001095562.1 127514365 4923451 complement(4103663..4105033) 1 NC_009092.1 PFAM: O-antigen polymerase; KEGG: she:Shewmr4_0421 O-antigen polymerase; O-antigen polymerase 4105033 4923451 Shew_3437 Shewanella loihica PV-4 O-antigen polymerase YP_001095562.1 4103663 R 323850 CDS YP_001095563.1 127514366 4923452 4105375..4107084 1 NC_009092.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_3605 type IV-A pilus assembly ATPase PilB; type IV-A pilus assembly ATPase PilB 4107084 4923452 Shew_3438 Shewanella loihica PV-4 type IV-A pilus assembly ATPase PilB YP_001095563.1 4105375 D 323850 CDS YP_001095564.1 127514367 4923453 4107121..4108389 1 NC_009092.1 PFAM: type II secretion system protein; KEGG: she:Shewmr4_0419 type II secretion system protein; type II secretion system protein 4108389 4923453 Shew_3439 Shewanella loihica PV-4 type II secretion system protein YP_001095564.1 4107121 D 323850 CDS YP_001095565.1 127514368 4923454 4108428..4109339 1 NC_009092.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: sfr:Sfri_3785 prepilin peptidase; prepilin peptidase 4109339 4923454 Shew_3440 Shewanella loihica PV-4 prepilin peptidase YP_001095565.1 4108428 D 323850 CDS YP_001095566.1 127514369 4923455 4109360..4109965 1 NC_009092.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 4109965 coaE 4923455 coaE Shewanella loihica PV-4 dephospho-CoA kinase YP_001095566.1 4109360 D 323850 CDS YP_001095567.1 127514370 4923456 4109974..4110708 1 NC_009092.1 PFAM: protein of unknown function DUF1342; KEGG: shm:Shewmr7_3609 protein of unknown function DUF1342; hypothetical protein 4110708 4923456 Shew_3442 Shewanella loihica PV-4 hypothetical protein YP_001095567.1 4109974 D 323850 CDS YP_001095568.1 127514371 4923457 4110745..4110969 1 NC_009092.1 PFAM: protein of unknown function DUF329; KEGG: shm:Shewmr7_3610 protein of unknown function DUF329; hypothetical protein 4110969 4923457 Shew_3443 Shewanella loihica PV-4 hypothetical protein YP_001095568.1 4110745 D 323850 CDS YP_001095569.1 127514372 4923458 4110970..4111359 1 NC_009092.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: shm:Shewmr7_3611 mutator MutT protein; mutator MutT protein 4111359 4923458 Shew_3444 Shewanella loihica PV-4 mutator MutT protein YP_001095569.1 4110970 D 323850 CDS YP_001095570.1 127514373 4923721 complement(4125120..4127843) 1 NC_009092.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 4127843 4923721 Shew_3445 Shewanella loihica PV-4 preprotein translocase subunit SecA YP_001095570.1 4125120 R 323850 CDS YP_001095571.1 127514374 4923460 complement(4127902..4128801) 1 NC_009092.1 PFAM: peptidase M23B; KEGG: shm:Shewmr7_0393 peptidase M23B; peptidase M23B 4128801 4923460 Shew_3446 Shewanella loihica PV-4 peptidase M23B YP_001095571.1 4127902 R 323850 CDS YP_001095572.1 127514375 4923461 4128829..4129284 1 NC_009092.1 KEGG: shm:Shewmr7_0392 hypothetical protein; hypothetical protein 4129284 4923461 Shew_3447 Shewanella loihica PV-4 hypothetical protein YP_001095572.1 4128829 D 323850 CDS YP_001095573.1 127514376 4923462 complement(4129288..4130208) 1 NC_009092.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4130208 lpxC 4923462 lpxC Shewanella loihica PV-4 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001095573.1 4129288 R 323850 CDS YP_001095574.1 127514377 4923463 complement(4130387..4131562) 1 NC_009092.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 4131562 4923463 Shew_3449 Shewanella loihica PV-4 cell division protein FtsZ YP_001095574.1 4130387 R 323850 CDS YP_001095575.1 127514378 4923375 complement(4131597..4132832) 1 NC_009092.1 PFAM: cell division protein FtsA; KEGG: shm:Shewmr7_0389 cell division protein FtsA; cell division protein FtsA 4132832 4923375 Shew_3450 Shewanella loihica PV-4 cell division protein FtsA YP_001095575.1 4131597 R 323850 CDS YP_001095576.1 127514379 4923376 complement(4132836..4133600) 1 NC_009092.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ; cell division protein FtsQ 4133600 4923376 Shew_3451 Shewanella loihica PV-4 cell division protein FtsQ YP_001095576.1 4132836 R 323850 CDS YP_001095577.1 127514380 4923377 complement(4133744..4135198) 1 NC_009092.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 4135198 murC 4923377 murC Shewanella loihica PV-4 UDP-N-acetylmuramate--L-alanine ligase YP_001095577.1 4133744 R 323850 CDS YP_001095578.1 127514381 4923378 complement(4135191..4136285) 1 NC_009092.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 4136285 murG 4923378 murG Shewanella loihica PV-4 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001095578.1 4135191 R 323850 CDS YP_001095579.1 127514382 4923379 complement(4136286..4137500) 1 NC_009092.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: shm:Shewmr7_0385 cell division protein FtsW; cell division protein FtsW 4137500 4923379 Shew_3454 Shewanella loihica PV-4 cell division protein FtsW YP_001095579.1 4136286 R 323850 CDS YP_001095580.1 127514383 4923380 complement(4137493..4138824) 1 NC_009092.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4138824 murD 4923380 murD Shewanella loihica PV-4 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001095580.1 4137493 R 323850 CDS YP_001095581.1 127514384 4923381 complement(4138831..4139913) 1 NC_009092.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 4139913 mraY 4923381 mraY Shewanella loihica PV-4 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001095581.1 4138831 R 323850 CDS YP_001095582.1 127514385 4923382 complement(4139913..4141283) 1 NC_009092.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0382 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 4141283 4923382 Shew_3457 Shewanella loihica PV-4 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001095582.1 4139913 R 323850 CDS YP_001095583.1 127514386 4923383 complement(4141280..4142746) 1 NC_009092.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 4142746 murE 4923383 murE Shewanella loihica PV-4 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001095583.1 4141280 R 323850 CDS YP_001095584.1 127514387 4923384 complement(4142746..4144482) 1 NC_009092.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: she:Shewmr4_3576 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 4144482 4923384 Shew_3459 Shewanella loihica PV-4 peptidoglycan glycosyltransferase YP_001095584.1 4142746 R 323850 CDS YP_001095585.1 127514388 4923385 complement(4144479..4144793) 1 NC_009092.1 PFAM: cell division protein FtsL; KEGG: she:Shewmr4_3577 cell division protein FtsL; cell division protein FtsL 4144793 4923385 Shew_3460 Shewanella loihica PV-4 cell division protein FtsL YP_001095585.1 4144479 R 323850 CDS YP_001095586.1 127514389 4923386 complement(4144831..4145772) 1 NC_009092.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: she:Shewmr4_3578 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 4145772 mraW 4923386 mraW Shewanella loihica PV-4 S-adenosyl-methyltransferase MraW YP_001095586.1 4144831 R 323850 CDS YP_001095587.1 127514390 4923387 complement(4145806..4146264) 1 NC_009092.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 4146264 4923387 Shew_3462 Shewanella loihica PV-4 cell division protein MraZ YP_001095587.1 4145806 R 323850 CDS YP_001095588.1 127514391 4923388 4146679..4147389 1 NC_009092.1 PFAM: PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0345 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein 4147389 4923388 Shew_3463 Shewanella loihica PV-4 PepSY-associated TM helix domain-containing protein YP_001095588.1 4146679 D 323850 CDS YP_001095589.1 127514392 4923389 4147386..4148513 1 NC_009092.1 PFAM: ferredoxin; KEGG: she:Shewmr4_3581 PepSY-associated TM helix domain protein; ferredoxin 4148513 4923389 Shew_3464 Shewanella loihica PV-4 ferredoxin YP_001095589.1 4147386 D 323850 CDS YP_001095590.1 127514393 4922467 4148680..4148988 1 NC_009092.1 KEGG: sfr:Sfri_3814 hypothetical protein; hypothetical protein 4148988 4922467 Shew_3465 Shewanella loihica PV-4 hypothetical protein YP_001095590.1 4148680 D 323850 CDS YP_001095591.1 127514394 4922468 complement(4149031..4150527) 1 NC_009092.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase 4150527 4922468 Shew_3466 Shewanella loihica PV-4 glycerol kinase YP_001095591.1 4149031 R 323850 CDS YP_001095592.1 127514395 4922469 complement(4150539..4151036) 1 NC_009092.1 KEGG: sdn:Sden_0341 hypothetical protein; hypothetical protein 4151036 4922469 Shew_3467 Shewanella loihica PV-4 hypothetical protein YP_001095592.1 4150539 R 323850 CDS YP_001095593.1 127514396 4922470 complement(4151263..4152618) 1 NC_009092.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: she:Shewmr4_3584 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 4152618 4922470 Shew_3468 Shewanella loihica PV-4 aromatic hydrocarbon degradation membrane protein YP_001095593.1 4151263 R 323850 CDS YP_001095594.1 127514397 4922471 complement(4153182..4153787) 1 NC_009092.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 4153787 leuD 4922471 leuD Shewanella loihica PV-4 isopropylmalate isomerase small subunit YP_001095594.1 4153182 R 323850 CDS YP_001095595.1 127514398 4922472 complement(4153797..4155197) 1 NC_009092.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 4155197 4922472 Shew_3470 Shewanella loihica PV-4 isopropylmalate isomerase large subunit YP_001095595.1 4153797 R 323850 CDS YP_001095596.1 127514399 4922473 complement(4155197..4156291) 1 NC_009092.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 4156291 4922473 Shew_3471 Shewanella loihica PV-4 3-isopropylmalate dehydrogenase YP_001095596.1 4155197 R 323850 CDS YP_001095597.1 127514400 4922474 complement(4156347..4157918) 1 NC_009092.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 4157918 4922474 Shew_3472 Shewanella loihica PV-4 2-isopropylmalate synthase YP_001095597.1 4156347 R 323850 CDS YP_001095598.1 127514401 4922475 4158437..4160185 1 NC_009092.1 KEGG: shm:Shewmr7_0367 tetratricopeptide domain protein; response regulator receiver protein 4160185 4922475 Shew_3473 Shewanella loihica PV-4 response regulator receiver protein YP_001095598.1 4158437 D 323850 CDS YP_001095599.1 127514402 4922476 complement(4160255..4162087) 1 NC_009092.1 KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 4162087 4922476 Shew_3474 Shewanella loihica PV-4 ATP-dependent DNA helicase RecQ YP_001095599.1 4160255 R 323850 CDS YP_001095600.1 127514403 4922477 4162326..4162790 1 NC_009092.1 TIGRFAM: uncharacterized domain 1 protein; PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_3591 uncharacterized domain 1 protein; hypothetical protein 4162790 4922477 Shew_3475 Shewanella loihica PV-4 hypothetical protein YP_001095600.1 4162326 D 323850 CDS YP_001095601.1 127514404 4922478 4162947..4163834 1 NC_009092.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein 4163834 4922478 Shew_3476 Shewanella loihica PV-4 transporter DMT superfamily protein YP_001095601.1 4162947 D 323850 CDS YP_001095602.1 127514405 4922479 complement(4163805..4164344) 1 NC_009092.1 KEGG: shm:Shewmr7_0363 hypothetical protein; hypothetical protein 4164344 4922479 Shew_3477 Shewanella loihica PV-4 hypothetical protein YP_001095602.1 4163805 R 323850 CDS YP_001095603.1 127514406 4922480 complement(4164531..4165853) 1 NC_009092.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 4165853 4922480 Shew_3478 Shewanella loihica PV-4 N-acetylglutamate synthase YP_001095603.1 4164531 R 323850 CDS YP_001095604.1 127514407 4923157 complement(4166177..4166350) 1 NC_009092.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 4166350 rpmG 4923157 rpmG Shewanella loihica PV-4 50S ribosomal protein L33 YP_001095604.1 4166177 R 323850 CDS YP_001095605.1 127514408 4923158 complement(4166357..4166593) 1 NC_009092.1 required for 70S ribosome assembly; 50S ribosomal protein L28 4166593 rpmB 4923158 rpmB Shewanella loihica PV-4 50S ribosomal protein L28 YP_001095605.1 4166357 R 323850 CDS YP_001095606.1 127514409 4923159 complement(4166717..4167418) 1 NC_009092.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 4167418 radC 4923159 radC Shewanella loihica PV-4 DNA repair protein RadC YP_001095606.1 4166717 R 323850 CDS YP_001095607.1 127514410 4923160 4167530..4168726 1 NC_009092.1 KEGG: sfr:Sfri_3829 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 4168726 4923160 Shew_3482 Shewanella loihica PV-4 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001095607.1 4167530 D 323850 CDS YP_001095608.1 127514411 4923161 4168723..4169181 1 NC_009092.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4169181 dut 4923161 dut Shewanella loihica PV-4 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001095608.1 4168723 D 323850 CDS YP_001095609.1 127514412 4923162 4169312..4169905 1 NC_009092.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4169905 slmA 4923162 slmA Shewanella loihica PV-4 nucleoid occlusion protein YP_001095609.1 4169312 D 323850 CDS YP_001095610.1 127514413 4923163 4170055..4172019 1 NC_009092.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4172019 4923163 Shew_3485 Shewanella loihica PV-4 peptidase S9 prolyl oligopeptidase YP_001095610.1 4170055 D 323850 CDS YP_001095611.1 127514414 4923164 4172245..4172889 1 NC_009092.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4172889 folE 4923164 folE Shewanella loihica PV-4 GTP cyclohydrolase I YP_001095611.1 4172245 D 323850 CDS YP_001095612.1 127514415 4923165 complement(4172971..4173612) 1 NC_009092.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4173612 pyrE 4923165 pyrE Shewanella loihica PV-4 orotate phosphoribosyltransferase YP_001095612.1 4172971 R 323850 CDS YP_001095613.1 127514416 4923166 complement(4173696..4174409) 1 NC_009092.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 4174409 rph 4923166 rph Shewanella loihica PV-4 ribonuclease PH YP_001095613.1 4173696 R 323850 CDS YP_001095614.1 127514417 4923167 4174591..4175454 1 NC_009092.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: she:Shewmr4_3605 hypothetical protein; hypothetical protein 4175454 4923167 Shew_3489 Shewanella loihica PV-4 hypothetical protein YP_001095614.1 4174591 D 323850 CDS YP_001095615.1 127514418 4923168 4175634..4175864 1 NC_009092.1 PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0337 transcriptional regulator, XRE family; XRE family transcriptional regulator 4175864 4923168 Shew_3490 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001095615.1 4175634 D 323850 CDS YP_001095616.1 127514419 4923169 4175857..4177812 1 NC_009092.1 KEGG: shm:Shewmr7_0338 hypothetical protein; hypothetical protein 4177812 4923169 Shew_3491 Shewanella loihica PV-4 hypothetical protein YP_001095616.1 4175857 D 323850 CDS YP_001095617.1 127514420 4923170 4177949..4178560 1 NC_009092.1 PFAM: Paraquat-inducible protein A; KEGG: pha:PSHAa0301 hypothetical protein; paraquat-inducible protein A 4178560 4923170 Shew_3492 Shewanella loihica PV-4 paraquat-inducible protein A YP_001095617.1 4177949 D 323850 CDS YP_001095618.1 127514421 4923171 complement(4178681..4179967) 1 NC_009092.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: sfr:Sfri_0862 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 4179967 4923171 Shew_3493 Shewanella loihica PV-4 acetyl-CoA hydrolase/transferase YP_001095618.1 4178681 R 323850 CDS YP_001095619.1 127514422 4923046 complement(4180147..4181211) 1 NC_009092.1 PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_0333 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4181211 4923046 Shew_3494 Shewanella loihica PV-4 aminoglycoside phosphotransferase YP_001095619.1 4180147 R 323850 CDS YP_001095620.1 127514423 4923047 complement(4181204..4182148) 1 NC_009092.1 KEGG: son:SO0363 hypothetical protein; hypothetical protein 4182148 4923047 Shew_3495 Shewanella loihica PV-4 hypothetical protein YP_001095620.1 4181204 R 323850 CDS YP_001095621.1 127514424 4923048 complement(4182237..4183430) 1 NC_009092.1 KEGG: sfr:Sfri_0366 hypothetical protein; hypothetical protein 4183430 4923048 Shew_3496 Shewanella loihica PV-4 hypothetical protein YP_001095621.1 4182237 R 323850 CDS YP_001095622.1 127514425 4923049 4183670..4184293 1 NC_009092.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4184293 gmk 4923049 gmk Shewanella loihica PV-4 guanylate kinase YP_001095622.1 4183670 D 323850 CDS YP_001095623.1 127514426 4923050 4184353..4184634 1 NC_009092.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4184634 rpoZ 4923050 rpoZ Shewanella loihica PV-4 DNA-directed RNA polymerase subunit omega YP_001095623.1 4184353 D 323850 CDS YP_001095624.1 127514427 4923051 4184648..4186753 1 NC_009092.1 KEGG: shm:Shewmr7_0328 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4186753 4923051 Shew_3499 Shewanella loihica PV-4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_001095624.1 4184648 D 323850 CDS YP_001095625.1 127514428 4923052 4186788..4187171 1 NC_009092.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sdn:Sden_3436 YjgF-like protein; putative endoribonuclease L-PSP 4187171 4923052 Shew_3500 Shewanella loihica PV-4 putative endoribonuclease L-PSP YP_001095625.1 4186788 D 323850 CDS YP_001095626.1 127514429 4923053 4187240..4187944 1 NC_009092.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 4187944 4923053 Shew_3501 Shewanella loihica PV-4 tRNA guanosine-2'-O-methyltransferase YP_001095626.1 4187240 D 323850 CDS YP_001095627.1 127514430 4923054 4188286..4189941 1 NC_009092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 4189941 4923054 Shew_3502 Shewanella loihica PV-4 AMP-dependent synthetase and ligase YP_001095627.1 4188286 D 323850 CDS YP_001095628.1 127514431 4923055 4190118..4191050 1 NC_009092.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shm:Shewmr7_0325 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4191050 4923055 Shew_3503 Shewanella loihica PV-4 CaCA family Na(+)/Ca(+) antiporter YP_001095628.1 4190118 D 323850 CDS YP_001095629.1 127514432 4923056 4191250..4191915 1 NC_009092.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_0324 TPR repeat-containing protein; hypothetical protein 4191915 4923056 Shew_3504 Shewanella loihica PV-4 hypothetical protein YP_001095629.1 4191250 D 323850 CDS YP_001095630.1 127514433 4923057 4192016..4193107 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_0323 putative signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4193107 4923057 Shew_3505 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095630.1 4192016 D 323850 CDS YP_001095631.1 127514434 4923058 4193115..4193711 1 NC_009092.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 4193711 4923058 Shew_3506 Shewanella loihica PV-4 two component LuxR family transcriptional regulator YP_001095631.1 4193115 D 323850 CDS YP_001095632.1 127514435 4923059 4193856..4195931 1 NC_009092.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4195931 4923059 Shew_3507 Shewanella loihica PV-4 ATP-dependent DNA helicase RecG YP_001095632.1 4193856 D 323850 CDS YP_001095633.1 127514436 4922960 4196058..4196930 1 NC_009092.1 KEGG: sfr:Sfri_0355 hypothetical protein; hypothetical protein 4196930 4922960 Shew_3508 Shewanella loihica PV-4 hypothetical protein YP_001095633.1 4196058 D 323850 CDS YP_001095634.1 127514437 4922961 4197123..4197857 1 NC_009092.1 KEGG: shm:Shewmr7_3674 hypothetical protein; hypothetical protein 4197857 4922961 Shew_3509 Shewanella loihica PV-4 hypothetical protein YP_001095634.1 4197123 D 323850 CDS YP_001095635.1 127514438 4922962 4197850..4198671 1 NC_009092.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_3675 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4198671 4922962 Shew_3510 Shewanella loihica PV-4 phospholipid/glycerol acyltransferase YP_001095635.1 4197850 D 323850 CDS YP_001095636.1 127514439 4922963 4198649..4198903 1 NC_009092.1 KEGG: shm:Shewmr7_3676 acyl carrier protein, putative; acyl carrier protein 4198903 4922963 Shew_3511 Shewanella loihica PV-4 acyl carrier protein YP_001095636.1 4198649 D 323850 CDS YP_001095637.1 127514440 4922964 4198912..4199160 1 NC_009092.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4199160 4922964 Shew_3512 Shewanella loihica PV-4 acyl carrier protein YP_001095637.1 4198912 D 323850 CDS YP_001095638.1 127514441 4922965 4199160..4199708 1 NC_009092.1 KEGG: son:SO4370 hypothetical protein; hypothetical protein 4199708 4922965 Shew_3513 Shewanella loihica PV-4 hypothetical protein YP_001095638.1 4199160 D 323850 CDS YP_001095639.1 127514442 4922966 4199705..4201066 1 NC_009092.1 KEGG: shm:Shewmr7_3679 hypothetical protein; hypothetical protein 4201066 4922966 Shew_3514 Shewanella loihica PV-4 hypothetical protein YP_001095639.1 4199705 D 323850 CDS YP_001095640.1 127514443 4922967 4201059..4201430 1 NC_009092.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: she:Shewmr4_0346 thioester dehydrase family protein; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 4201430 4922967 Shew_3515 Shewanella loihica PV-4 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001095640.1 4201059 D 323850 CDS YP_001095641.1 127514444 4922968 4201430..4203148 1 NC_009092.1 PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: she:Shewmr4_0345 glycosyl transferase, family 2; glycosyl transferase family protein 4203148 4922968 Shew_3516 Shewanella loihica PV-4 glycosyl transferase family protein YP_001095641.1 4201430 D 323850 CDS YP_001095642.1 127514445 4922969 4203149..4204711 1 NC_009092.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: shm:Shewmr7_3682 histidine ammonia-lyase; histidine ammonia-lyase 4204711 4922969 Shew_3517 Shewanella loihica PV-4 histidine ammonia-lyase YP_001095642.1 4203149 D 323850 CDS YP_001095643.1 127514446 4922970 4204722..4205156 1 NC_009092.1 KEGG: shm:Shewmr7_3683 thioesterase superfamily protein; thioesterase superfamily protein 4205156 4922970 Shew_3518 Shewanella loihica PV-4 thioesterase superfamily protein YP_001095643.1 4204722 D 323850 CDS YP_001095644.1 127514447 4922971 4205153..4205926 1 NC_009092.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO4376 hypothetical protein; outer membrane lipoprotein carrier protein LolA 4205926 4922971 Shew_3519 Shewanella loihica PV-4 outer membrane lipoprotein carrier protein LolA YP_001095644.1 4205153 D 323850 CDS YP_001095645.1 127514448 4922972 4205923..4208448 1 NC_009092.1 KEGG: she:Shewmr4_0341 hypothetical protein; hypothetical protein 4208448 4922972 Shew_3520 Shewanella loihica PV-4 hypothetical protein YP_001095645.1 4205923 D 323850 CDS YP_001095646.1 127514449 4922973 4208445..4209719 1 NC_009092.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; tryptophan halogenase 4209719 4922973 Shew_3521 Shewanella loihica PV-4 tryptophan halogenase YP_001095646.1 4208445 D 323850 CDS YP_001095647.1 127514450 4922974 4209710..4210282 1 NC_009092.1 KEGG: sfr:Sfri_0341 hypothetical protein; hypothetical protein 4210282 4922974 Shew_3522 Shewanella loihica PV-4 hypothetical protein YP_001095647.1 4209710 D 323850 CDS YP_001095648.1 127514451 4922856 4210315..4211520 1 NC_009092.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4211520 4922856 Shew_3523 Shewanella loihica PV-4 3-oxoacyl-ACP synthase YP_001095648.1 4210315 D 323850 CDS YP_001095649.1 127514452 4922857 4211520..4212113 1 NC_009092.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: sfr:Sfri_0339 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 4212113 4922857 Shew_3524 Shewanella loihica PV-4 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_001095649.1 4211520 D 323850 CDS YP_001095650.1 127514453 4922858 4212110..4212835 1 NC_009092.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4212835 fabG 4922858 fabG Shewanella loihica PV-4 3-ketoacyl-ACP reductase YP_001095650.1 4212110 D 323850 CDS YP_001095651.1 127514454 4922859 4212835..4214076 1 NC_009092.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 4214076 4922859 Shew_3526 Shewanella loihica PV-4 3-oxoacyl-(acyl carrier protein) synthase II YP_001095651.1 4212835 D 323850 CDS YP_001095652.1 127514455 4922860 4214194..4214649 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0328 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4214649 4922860 Shew_3527 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001095652.1 4214194 D 323850 CDS YP_001095653.1 127514456 4922861 4214793..4215131 1 NC_009092.1 PFAM: Rhodanese domain protein; KEGG: son:SO4394 phage shock protein E; rhodanese domain-containing protein 4215131 4922861 Shew_3528 Shewanella loihica PV-4 rhodanese domain-containing protein YP_001095653.1 4214793 D 323850 CDS YP_001095654.1 127514457 4922862 complement(4215413..4216006) 1 NC_009092.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 4216006 4922862 Shew_3529 Shewanella loihica PV-4 azoreductase YP_001095654.1 4215413 R 323850 CDS YP_001095655.1 127514458 4922863 4216330..4218753 1 NC_009092.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4218753 4922863 Shew_3530 Shewanella loihica PV-4 glycerol-3-phosphate acyltransferase YP_001095655.1 4216330 D 323850 CDS YP_001095656.1 127514459 4922864 4218753..4220009 1 NC_009092.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: sfr:Sfri_0262 aromatic amino acid transporter; aromatic amino acid transporter 4220009 4922864 Shew_3531 Shewanella loihica PV-4 aromatic amino acid transporter YP_001095656.1 4218753 D 323850 CDS YP_001095657.1 127514460 4922865 complement(4220079..4220492) 1 NC_009092.1 PFAM: globin; KEGG: cvi:CV2936 probable bacterial hemoglobin; globin 4220492 4922865 Shew_3532 Shewanella loihica PV-4 globin YP_001095657.1 4220079 R 323850 CDS YP_001095658.1 127514461 4922866 4220653..4221432 1 NC_009092.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0263 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4221432 4922866 Shew_3533 Shewanella loihica PV-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001095658.1 4220653 D 323850 CDS YP_001095659.1 127514462 4922867 complement(4221817..4224960) 1 NC_009092.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_3783 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4224960 4922867 Shew_3534 Shewanella loihica PV-4 CzcA family heavy metal efflux protein YP_001095659.1 4221817 R 323850 CDS YP_001095660.1 127514463 4922868 complement(4224969..4226558) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_3782 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4226558 4922868 Shew_3535 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001095660.1 4224969 R 323850 CDS YP_001095661.1 127514464 4922869 complement(4226582..4227115) 1 NC_009092.1 KEGG: she:Shewmr4_3781 copper-transporting ATPase domain protein; hypothetical protein 4227115 4922869 Shew_3536 Shewanella loihica PV-4 hypothetical protein YP_001095661.1 4226582 R 323850 CDS YP_001095662.1 127514465 4922840 complement(4227385..4227792) 1 NC_009092.1 KEGG: son:SOA0156 hypothetical protein; hypothetical protein 4227792 4922840 Shew_3537 Shewanella loihica PV-4 hypothetical protein YP_001095662.1 4227385 R 323850 CDS YP_001095663.1 127514466 4922841 complement(4227898..4228335) 1 NC_009092.1 KEGG: sfr:Sfri_0591 hypothetical protein; hypothetical protein 4228335 4922841 Shew_3538 Shewanella loihica PV-4 hypothetical protein YP_001095663.1 4227898 R 323850 CDS YP_001095664.1 127514467 4922842 complement(4228454..4228978) 1 NC_009092.1 hypothetical protein 4228978 4922842 Shew_3539 Shewanella loihica PV-4 hypothetical protein YP_001095664.1 4228454 R 323850 CDS YP_001095665.1 127514468 4922843 4229319..4229882 1 NC_009092.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein 4229882 4922843 Shew_3540 Shewanella loihica PV-4 NapC/NirT cytochrome c domain-containing protein YP_001095665.1 4229319 D 323850 CDS YP_001095666.1 127514469 4922844 complement(4230029..4230499) 1 NC_009092.1 TIGRFAM: thioesterase domain, putative; KEGG: she:Shewmr4_0320 thioesterase domain, putative; thioesterase domain-containing protein 4230499 4922844 Shew_3541 Shewanella loihica PV-4 thioesterase domain-containing protein YP_001095666.1 4230029 R 323850 CDS YP_001095667.1 127514470 4922845 complement(4230502..4230939) 1 NC_009092.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4230939 4922845 Shew_3542 Shewanella loihica PV-4 D-tyrosyl-tRNA(Tyr) deacylase YP_001095667.1 4230502 R 323850 CDS YP_001095668.1 127514471 4922846 complement(4230969..4231532) 1 NC_009092.1 KEGG: son:SO4399 hypothetical protein; hypothetical protein 4231532 4922846 Shew_3543 Shewanella loihica PV-4 hypothetical protein YP_001095668.1 4230969 R 323850 CDS YP_001095669.1 127514472 4922847 complement(4231681..4232631) 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4400 proline iminopeptidase, putative; alpha/beta hydrolase 4232631 4922847 Shew_3544 Shewanella loihica PV-4 alpha/beta hydrolase YP_001095669.1 4231681 R 323850 CDS YP_001095670.1 127514473 4922848 complement(4232628..4233485) 1 NC_009092.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4233485 rbn 4922848 rbn Shewanella loihica PV-4 ribonuclease BN YP_001095670.1 4232628 R 323850 CDS YP_001095671.1 127514474 4922849 4233641..4233862 1 NC_009092.1 KEGG: shm:Shewmr7_3709 hypothetical protein; hypothetical protein 4233862 4922849 Shew_3546 Shewanella loihica PV-4 hypothetical protein YP_001095671.1 4233641 D 323850 CDS YP_001095672.1 127514475 4922850 4233887..4234537 1 NC_009092.1 KEGG: shm:Shewmr7_3710 hypothetical protein; hypothetical protein 4234537 4922850 Shew_3547 Shewanella loihica PV-4 hypothetical protein YP_001095672.1 4233887 D 323850 CDS YP_001095673.1 127514476 4922851 4234838..4235455 1 NC_009092.1 hypothetical protein 4235455 4922851 Shew_3548 Shewanella loihica PV-4 hypothetical protein YP_001095673.1 4234838 D 323850 CDS YP_001095674.1 127514477 4922852 4235678..4236892 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfr:Sfri_0773 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4236892 4922852 Shew_3549 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001095674.1 4235678 D 323850 CDS YP_001095675.1 127514478 4922853 complement(4237977..4238753) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: hch:HCH_02929 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator 4238753 4922853 Shew_3550 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001095675.1 4237977 R 323850 CDS YP_001095676.1 127514479 4922854 4238853..4239992 1 NC_009092.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: vpa:VPA1016 multidrug resistance protein D; Bcr/CflA subfamily drug resistance transporter 4239992 4922854 Shew_3551 Shewanella loihica PV-4 Bcr/CflA subfamily drug resistance transporter YP_001095676.1 4238853 D 323850 CDS YP_001095677.1 127514480 4922687 4240694..4241707 1 NC_009092.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 4241707 4922687 Shew_3552 Shewanella loihica PV-4 transposase IS116/IS110/IS902 family protein YP_001095677.1 4240694 D 323850 CDS YP_001095678.1 127514481 4922688 complement(4242295..4244118) 1 NC_009092.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: shm:Shewmr7_3718 GTP-binding protein TypA; GTP-binding protein TypA 4244118 4922688 Shew_3553 Shewanella loihica PV-4 GTP-binding protein TypA YP_001095678.1 4242295 R 323850 CDS YP_001095679.1 127514482 4922689 4244487..4245896 1 NC_009092.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4245896 glnA 4922689 glnA Shewanella loihica PV-4 glutamine synthetase YP_001095679.1 4244487 D 323850 CDS YP_001095680.1 127514483 4922690 4246258..4247082 1 NC_009092.1 KEGG: shm:Shewmr7_0880 hypothetical protein; hypothetical protein 4247082 4922690 Shew_3555 Shewanella loihica PV-4 hypothetical protein YP_001095680.1 4246258 D 323850 CDS YP_001095681.1 127514484 4922691 complement(4247251..4248363) 1 NC_009092.1 PFAM: aminotransferase, class V; KEGG: shm:Shewmr7_3724 aminotransferase, class V; class V aminotransferase 4248363 4922691 Shew_3556 Shewanella loihica PV-4 class V aminotransferase YP_001095681.1 4247251 R 323850 CDS YP_001095682.1 127514485 4922692 complement(4248367..4249539) 1 NC_009092.1 KEGG: she:Shewmr4_0294 hypothetical protein; hypothetical protein 4249539 4922692 Shew_3557 Shewanella loihica PV-4 hypothetical protein YP_001095682.1 4248367 R 323850 CDS YP_001095683.1 127514486 4922693 4249727..4250188 1 NC_009092.1 PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pha:PSHAa0053 transcriptional regulator; AsnC family transcriptional regulator 4250188 4922693 Shew_3558 Shewanella loihica PV-4 AsnC family transcriptional regulator YP_001095683.1 4249727 D 323850 CDS YP_001095684.1 127514487 4922694 4250249..4250797 1 NC_009092.1 KEGG: shm:Shewmr7_3762 hypothetical protein; hypothetical protein 4250797 4922694 Shew_3559 Shewanella loihica PV-4 hypothetical protein YP_001095684.1 4250249 D 323850 CDS YP_001095685.1 127514488 4922695 4250924..4251979 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3763 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 4251979 4922695 Shew_3560 Shewanella loihica PV-4 signal transduction histidine kinase, nitrogen specific, NtrB YP_001095685.1 4250924 D 323850 CDS YP_001095686.1 127514489 4922696 4252021..4253430 1 NC_009092.1 KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 4253430 4922696 Shew_3561 Shewanella loihica PV-4 nitrogen metabolism transcriptional regulator, NtrC, Fis family YP_001095686.1 4252021 D 323850 CDS YP_001095687.1 127514490 4922697 4253687..4254577 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family; LysR family transcriptional regulator 4254577 4922697 Shew_3562 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095687.1 4253687 D 323850 CDS YP_001095688.1 127514491 4922698 4255044..4255901 1 NC_009092.1 KEGG: shm:Shewmr7_2645 hypothetical protein; hypothetical protein 4255901 4922698 Shew_3563 Shewanella loihica PV-4 hypothetical protein YP_001095688.1 4255044 D 323850 CDS YP_001095689.1 127514492 4922699 4255912..4257198 1 NC_009092.1 KEGG: shm:Shewmr7_2646 hypothetical protein; hypothetical protein 4257198 4922699 Shew_3564 Shewanella loihica PV-4 hypothetical protein YP_001095689.1 4255912 D 323850 CDS YP_001095690.1 127514493 4922700 complement(4257269..4260379) 1 NC_009092.1 PFAM: acriflavin resistance protein; KEGG: sdn:Sden_2206 acriflavin resistance protein; acriflavin resistance protein 4260379 4922700 Shew_3565 Shewanella loihica PV-4 acriflavin resistance protein YP_001095690.1 4257269 R 323850 CDS YP_001095691.1 127514494 4922701 complement(4260376..4261683) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sdn:Sden_2205 membrane-fusion protein; RND family efflux transporter MFP subunit 4261683 4922701 Shew_3566 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001095691.1 4260376 R 323850 CDS YP_001095692.1 127514495 4922640 complement(4261676..4262329) 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: sdn:Sden_2204 regulatory protein, TetR; TetR family transcriptional regulator 4262329 4922640 Shew_3567 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001095692.1 4261676 R 323850 CDS YP_001095693.1 127514496 4922641 complement(4262463..4263332) 1 NC_009092.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 4263332 4922641 Shew_3568 Shewanella loihica PV-4 cation diffusion facilitator family transporter YP_001095693.1 4262463 R 323850 CDS YP_001095694.1 127514497 4922642 complement(4263398..4263841) 1 NC_009092.1 PFAM: protein of unknown function, Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein 4263841 4922642 Shew_3569 Shewanella loihica PV-4 hypothetical protein YP_001095694.1 4263398 R 323850 CDS YP_001095695.1 127514498 4922643 4264116..4264799 1 NC_009092.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0311 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator 4264799 4922643 Shew_3570 Shewanella loihica PV-4 two component transcriptional regulator YP_001095695.1 4264116 D 323850 CDS YP_001095696.1 127514499 4922644 4264799..4266166 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; integral membrane sensor signal transduction histidine kinase 4266166 4922644 Shew_3571 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095696.1 4264799 D 323850 CDS YP_001095697.1 127514500 4922645 complement(4266250..4267230) 1 NC_009092.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: she:Shewmr4_2154 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 4267230 4922645 Shew_3572 Shewanella loihica PV-4 alcohol dehydrogenase YP_001095697.1 4266250 R 323850 CDS YP_001095698.1 127514501 4922646 complement(4267334..4269109) 1 NC_009092.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3771 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 4269109 4922646 Shew_3573 Shewanella loihica PV-4 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001095698.1 4267334 R 323850 CDS YP_001095699.1 127514502 4922647 4269448..4270968 1 NC_009092.1 PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 4270968 4922647 Shew_3574 Shewanella loihica PV-4 aldehyde dehydrogenase YP_001095699.1 4269448 D 323850 CDS YP_001095700.1 127514503 4922648 complement(4271694..4272143) 1 NC_009092.1 hypothetical protein 4272143 4922648 Shew_3575 Shewanella loihica PV-4 hypothetical protein YP_001095700.1 4271694 R 323850 CDS YP_001095701.1 127514504 4922649 complement(4273940..4274614) 1 NC_009092.1 KEGG: rme:Rmet_2216 cysteine dioxygenase type I; cysteine dioxygenase type I 4274614 4922649 Shew_3576 Shewanella loihica PV-4 cysteine dioxygenase type I YP_001095701.1 4273940 R 323850 CDS YP_001095702.1 127514505 4922650 4274919..4275383 1 NC_009092.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: she:Shewmr4_3736 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 4275383 4922650 Shew_3577 Shewanella loihica PV-4 RNA methyltransferase YP_001095702.1 4274919 D 323850 CDS YP_001095703.1 127514506 4922651 complement(4275400..4275909) 1 NC_009092.1 KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein 4275909 4922651 Shew_3578 Shewanella loihica PV-4 hypothetical protein YP_001095703.1 4275400 R 323850 CDS YP_001095704.1 127514507 4922652 complement(4275893..4276444) 1 NC_009092.1 KEGG: dar:Daro_0041 hypothetical protein; hypothetical protein 4276444 4922652 Shew_3579 Shewanella loihica PV-4 hypothetical protein YP_001095704.1 4275893 R 323850 CDS YP_001095705.1 127514508 4922653 complement(4276656..4278104) 1 NC_009092.1 PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3814 peptidase M16 domain protein; peptidase M16 domain-containing protein 4278104 4922653 Shew_3580 Shewanella loihica PV-4 peptidase M16 domain-containing protein YP_001095705.1 4276656 R 323850 CDS YP_001095706.1 127514509 4922549 complement(4278101..4279486) 1 NC_009092.1 PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3815 peptidase M16 domain protein; peptidase M16 domain-containing protein 4279486 4922549 Shew_3581 Shewanella loihica PV-4 peptidase M16 domain-containing protein YP_001095706.1 4278101 R 323850 CDS YP_001095707.1 127514510 4922550 4279646..4280356 1 NC_009092.1 KEGG: pha:PSHAa0016 hypothetical protein; hypothetical protein 4280356 4922550 Shew_3582 Shewanella loihica PV-4 hypothetical protein YP_001095707.1 4279646 D 323850 CDS YP_001095708.1 127514511 4922551 complement(4280417..4281052) 1 NC_009092.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3819 methyltransferase type 11; type 12 methyltransferase 4281052 4922551 Shew_3583 Shewanella loihica PV-4 type 12 methyltransferase YP_001095708.1 4280417 R 323850 CDS YP_001095709.1 127514512 4922552 complement(4281064..4281411) 1 NC_009092.1 KEGG: she:Shewmr4_3747 hypothetical protein; hypothetical protein 4281411 4922552 Shew_3584 Shewanella loihica PV-4 hypothetical protein YP_001095709.1 4281064 R 323850 CDS YP_001095710.1 127514513 4922553 4281680..4283785 1 NC_009092.1 KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4283785 4922553 Shew_3585 Shewanella loihica PV-4 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001095710.1 4281680 D 323850 CDS YP_001095711.1 127514514 4922554 complement(4283973..4284575) 1 NC_009092.1 PFAM: DTW domain containing protein; KEGG: sfr:Sfri_0299 DTW domain containing protein; DTW domain-containing protein 4284575 4922554 Shew_3586 Shewanella loihica PV-4 DTW domain-containing protein YP_001095711.1 4283973 R 323850 CDS YP_001095712.1 127514515 4922555 4284800..4285753 1 NC_009092.1 KEGG: sfr:Sfri_3123 hypothetical protein; hypothetical protein 4285753 4922555 Shew_3587 Shewanella loihica PV-4 hypothetical protein YP_001095712.1 4284800 D 323850 CDS YP_001095713.1 127514516 4922556 complement(4285833..4287035) 1 NC_009092.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3750 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 4287035 4922556 Shew_3588 Shewanella loihica PV-4 Bcr/CflA subfamily drug resistance transporter YP_001095713.1 4285833 R 323850 CDS YP_001095714.1 127514517 4922557 4287146..4288138 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator 4288138 4922557 Shew_3589 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095714.1 4287146 D 323850 CDS YP_001095715.1 127514518 4922558 4288280..4288630 1 NC_009092.1 KEGG: son:SO4558 hypothetical protein; hypothetical protein 4288630 4922558 Shew_3590 Shewanella loihica PV-4 hypothetical protein YP_001095715.1 4288280 D 323850 CDS YP_001095716.1 127514519 4922559 complement(4288620..4289939) 1 NC_009092.1 KEGG: ccr:CC3273 hypothetical protein; hypothetical protein 4289939 4922559 Shew_3591 Shewanella loihica PV-4 hypothetical protein YP_001095716.1 4288620 R 323850 CDS YP_001095717.1 127514520 4922560 complement(4289980..4291398) 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein; Sel1 domain-containing protein 4291398 4922560 Shew_3592 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001095717.1 4289980 R 323850 CDS YP_001095718.1 127514521 4922561 complement(4291447..4292172) 1 NC_009092.1 KEGG: she:Shewmr4_3755 hypothetical protein; hypothetical protein 4292172 4922561 Shew_3593 Shewanella loihica PV-4 hypothetical protein YP_001095718.1 4291447 R 323850 CDS YP_001095719.1 127514522 4922562 4292326..4292844 1 NC_009092.1 KEGG: shm:Shewmr7_3829 hypothetical protein; hypothetical protein 4292844 4922562 Shew_3594 Shewanella loihica PV-4 hypothetical protein YP_001095719.1 4292326 D 323850 CDS YP_001095720.1 127514523 4922563 4292936..4293388 1 NC_009092.1 PFAM: protein of unknown function DUF1332; KEGG: she:Shewmr4_3757 protein of unknown function DUF1332; hypothetical protein 4293388 4922563 Shew_3595 Shewanella loihica PV-4 hypothetical protein YP_001095720.1 4292936 D 323850 CDS YP_001095721.1 127514524 4922501 complement(4293501..4294226) 1 NC_009092.1 PFAM: Methyltransferase type 11; KEGG: cps:CPS_0687 hypothetical protein; type 11 methyltransferase 4294226 4922501 Shew_3596 Shewanella loihica PV-4 type 11 methyltransferase YP_001095721.1 4293501 R 323850 CDS YP_001095722.1 127514525 4922502 complement(4294383..4295642) 1 NC_009092.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4295642 4922502 Shew_3597 Shewanella loihica PV-4 inner membrane protein YjeH YP_001095722.1 4294383 R 323850 CDS YP_001095723.1 127514526 4922503 4295812..4296240 1 NC_009092.1 PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR; KEGG: shm:Shewmr7_3834 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4296240 4922503 Shew_3598 Shewanella loihica PV-4 AsnC family transcriptional regulator YP_001095723.1 4295812 D 323850 CDS YP_001095724.1 127514527 4922504 4296340..4298043 1 NC_009092.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4298043 4922504 Shew_3599 Shewanella loihica PV-4 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_001095724.1 4296340 D 323850 CDS YP_001095725.1 127514528 4922505 4298043..4298840 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3841 alpha/beta hydrolase fold; alpha/beta hydrolase 4298840 4922505 Shew_3600 Shewanella loihica PV-4 alpha/beta hydrolase YP_001095725.1 4298043 D 323850 CDS YP_001095726.1 127514529 4922506 4298837..4299895 1 NC_009092.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4299895 4922506 Shew_3601 Shewanella loihica PV-4 O-succinylbenzoate synthase YP_001095726.1 4298837 D 323850 CDS YP_001095727.1 127514530 4922507 4299892..4301406 1 NC_009092.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_3770 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 4301406 4922507 Shew_3602 Shewanella loihica PV-4 o-succinylbenzoate--CoA ligase YP_001095727.1 4299892 D 323850 CDS YP_001095728.1 127514531 4922508 complement(4301446..4302303) 1 NC_009092.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4302303 4922508 Shew_3603 Shewanella loihica PV-4 RNA polymerase factor sigma-32 YP_001095728.1 4301446 R 323850 CDS YP_001095729.1 127514532 4922509 complement(4302598..4303563) 1 NC_009092.1 PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; hypothetical protein 4303563 4922509 Shew_3604 Shewanella loihica PV-4 hypothetical protein YP_001095729.1 4302598 R 323850 CDS YP_001095730.1 127514533 4922510 complement(4303578..4304279) 1 NC_009092.1 KEGG: shm:Shewmr7_3846 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter-related protein; SMART: AAA ATPase; cell division ATP-binding protein FtsE 4304279 4922510 Shew_3605 Shewanella loihica PV-4 cell division ATP-binding protein FtsE YP_001095730.1 4303578 R 323850 CDS YP_001095731.1 127514534 4922511 complement(4304363..4306048) 1 NC_009092.1 KEGG: shm:Shewmr7_3847 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 4306048 4922511 Shew_3606 Shewanella loihica PV-4 signal recognition particle-docking protein FtsY YP_001095731.1 4304363 R 323850 CDS YP_001095732.1 127514535 4922512 4306297..4306884 1 NC_009092.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_3775 putative methyltransferase; putative methyltransferase 4306884 4922512 Shew_3607 Shewanella loihica PV-4 putative methyltransferase YP_001095732.1 4306297 D 323850 CDS YP_001095733.1 127514536 4922513 4306884..4307174 1 NC_009092.1 PFAM: protein of unknown function DUF1145; KEGG: shm:Shewmr7_3849 protein of unknown function DUF1145; hypothetical protein 4307174 4922513 Shew_3608 Shewanella loihica PV-4 hypothetical protein YP_001095733.1 4306884 D 323850 CDS YP_001095734.1 127514537 4922514 complement(4307253..4308014) 1 NC_009092.1 PFAM: type II secretion system protein N; KEGG: shm:Shewmr7_0161 type II secretion system protein N; type II secretion system protein N 4308014 4922514 Shew_3609 Shewanella loihica PV-4 type II secretion system protein N YP_001095734.1 4307253 R 323850 CDS YP_001095735.1 127514538 4922396 complement(4308035..4308511) 1 NC_009092.1 PFAM: General secretion pathway M protein; KEGG: shm:Shewmr7_0160 general secretion pathway M protein; general secretion pathway M protein 4308511 4922396 Shew_3610 Shewanella loihica PV-4 general secretion pathway M protein YP_001095735.1 4308035 R 323850 CDS YP_001095736.1 127514539 4922397 complement(4308513..4309703) 1 NC_009092.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: shm:Shewmr7_0159 general secretion pathway protein L; general secretion pathway protein L 4309703 4922397 Shew_3611 Shewanella loihica PV-4 general secretion pathway protein L YP_001095736.1 4308513 R 323850 CDS YP_001095737.1 127514540 4922398 complement(4309788..4310786) 1 NC_009092.1 PFAM: General secretion pathway protein K; KEGG: shm:Shewmr7_0158 general secretion pathway protein K; general secretion pathway protein K 4310786 4922398 Shew_3612 Shewanella loihica PV-4 general secretion pathway protein K YP_001095737.1 4309788 R 323850 CDS YP_001095738.1 127514541 4922399 complement(4310779..4311558) 1 NC_009092.1 TIGRFAM: general secretion pathway protein J; KEGG: she:Shewmr4_0162 general secretion pathway protein J; general secretion pathway protein J 4311558 4922399 Shew_3613 Shewanella loihica PV-4 general secretion pathway protein J YP_001095738.1 4310779 R 323850 CDS YP_001095739.1 127514542 4922400 complement(4311539..4311943) 1 NC_009092.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: shm:Shewmr7_0156 general secretion pathway protein I; general secretion pathway protein I 4311943 4922400 Shew_3614 Shewanella loihica PV-4 general secretion pathway protein I YP_001095739.1 4311539 R 323850 CDS YP_001095740.1 127514543 4922401 complement(4311936..4312514) 1 NC_009092.1 TIGRFAM: general secretion pathway protein H; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 4312514 4922401 Shew_3615 Shewanella loihica PV-4 general secretion pathway protein H YP_001095740.1 4311936 R 323850 CDS YP_001095741.1 127514544 4922402 complement(4312535..4312969) 1 NC_009092.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shm:Shewmr7_0154 general secretion pathway protein G; general secretion pathway protein G 4312969 4922402 Shew_3616 Shewanella loihica PV-4 general secretion pathway protein G YP_001095741.1 4312535 R 323850 CDS YP_001095742.1 127514545 4922403 complement(4313041..4314261) 1 NC_009092.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sfr:Sfri_0107 general secretion pathway protein F; general secretion pathway protein F 4314261 4922403 Shew_3617 Shewanella loihica PV-4 general secretion pathway protein F YP_001095742.1 4313041 R 323850 CDS YP_001095743.1 127514546 4922404 complement(4314264..4315835) 1 NC_009092.1 KEGG: shm:Shewmr7_0152 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 4315835 4922404 Shew_3618 Shewanella loihica PV-4 general secretory pathway protein E YP_001095743.1 4314264 R 323850 CDS YP_001095744.1 127514547 4922405 complement(4315828..4317951) 1 NC_009092.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: shm:Shewmr7_0151 general secretion pathway protein D; general secretion pathway protein D 4317951 4922405 Shew_3619 Shewanella loihica PV-4 general secretion pathway protein D YP_001095744.1 4315828 R 323850 CDS YP_001095745.1 127514548 4922406 complement(4317974..4318891) 1 NC_009092.1 TIGRFAM: general secretion pathway protein C; KEGG: she:Shewmr4_0155 general secretion pathway protein C; general secretion pathway protein C 4318891 4922406 Shew_3620 Shewanella loihica PV-4 general secretion pathway protein C YP_001095745.1 4317974 R 323850 CDS YP_001095746.1 127514549 4922407 4319154..4319546 1 NC_009092.1 PFAM: RNA-binding S4 domain protein; KEGG: shm:Shewmr7_0149 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 4319546 4922407 Shew_3621 Shewanella loihica PV-4 RNA-binding S4 domain-containing protein YP_001095746.1 4319154 D 323850 CDS YP_001095747.1 127514550 4922408 4319560..4320420 1 NC_009092.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 4320420 hslO 4922408 hslO Shewanella loihica PV-4 Hsp33-like chaperonin YP_001095747.1 4319560 D 323850 CDS YP_001095748.1 127514551 4922409 4320611..4322152 1 NC_009092.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 4322152 4922409 Shew_3623 Shewanella loihica PV-4 phosphoenolpyruvate carboxykinase YP_001095748.1 4320611 D 323850 CDS YP_001095749.1 127514552 4922410 4322361..4324166 1 NC_009092.1 KEGG: shm:Shewmr7_0144 hypothetical protein; hypothetical protein 4324166 4922410 Shew_3624 Shewanella loihica PV-4 hypothetical protein YP_001095749.1 4322361 D 323850 CDS YP_001095750.1 127514553 4922378 4324508..4325734 1 NC_009092.1 PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 4325734 4922378 Shew_3625 Shewanella loihica PV-4 sodium:dicarboxylate symporter YP_001095750.1 4324508 D 323850 CDS YP_001095751.1 127514554 4922379 4326037..4326462 1 NC_009092.1 KEGG: sfr:Sfri_3409 hypothetical protein; hypothetical protein 4326462 4922379 Shew_3626 Shewanella loihica PV-4 hypothetical protein YP_001095751.1 4326037 D 323850 CDS YP_001095752.1 127514555 4922380 4326459..4326656 1 NC_009092.1 PFAM: helix-turn-helix domain protein; KEGG: ccr:CC2232 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 4326656 4922380 Shew_3627 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001095752.1 4326459 D 323850 CDS YP_001095753.1 127514556 4922381 4326813..4327295 1 NC_009092.1 PFAM: MgtC/SapB transporter; KEGG: ilo:IL2442 uncharacterized conserved membrane protein, SapB/MtgC family; MgtC/SapB transporter 4327295 4922381 Shew_3628 Shewanella loihica PV-4 MgtC/SapB transporter YP_001095753.1 4326813 D 323850 CDS YP_001095754.1 127514557 4922382 complement(4327289..4328047) 1 NC_009092.1 KEGG: she:Shewmr4_3805 competence protein ComF; competence protein ComF 4328047 4922382 Shew_3629 Shewanella loihica PV-4 competence protein ComF YP_001095754.1 4327289 R 323850 CDS YP_001095755.1 127514558 4922383 4328079..4328858 1 NC_009092.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3882 BioH protein; bioH protein 4328858 4922383 Shew_3630 Shewanella loihica PV-4 bioH protein YP_001095755.1 4328079 D 323850 CDS YP_001095756.1 127514559 4922384 4328917..4329411 1 NC_009092.1 KEGG: she:Shewmr4_3807 hypothetical protein; hypothetical protein 4329411 4922384 Shew_3631 Shewanella loihica PV-4 hypothetical protein YP_001095756.1 4328917 D 323850 CDS YP_001095757.1 127514560 4922385 complement(4329404..4331392) 1 NC_009092.1 PFAM: sulfatase; KEGG: son:SO4628 sulfatase; sulfatase 4331392 4922385 Shew_3632 Shewanella loihica PV-4 sulfatase YP_001095757.1 4329404 R 323850 CDS YP_001095758.1 127514561 4922386 4331885..4332103 1 NC_009092.1 hypothetical protein 4332103 4922386 Shew_3633 Shewanella loihica PV-4 hypothetical protein YP_001095758.1 4331885 D 323850 CDS YP_001095759.1 127514562 4922387 complement(4332191..4334554) 1 NC_009092.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein 4334554 4922387 Shew_3634 Shewanella loihica PV-4 RNA-binding S1 domain-containing protein YP_001095759.1 4332191 R 323850 CDS YP_001095760.1 127514563 4922388 complement(4334682..4336493) 1 NC_009092.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: sdn:Sden_1376 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate binding domain-containing protein 4336493 4922388 Shew_3635 Shewanella loihica PV-4 thiamine pyrophosphate binding domain-containing protein YP_001095760.1 4334682 R 323850 CDS YP_001095761.1 127514564 4922389 complement(4336728..4337210) 1 NC_009092.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: she:Shewmr4_3810 transcription elongation factor GreB; transcription elongation factor GreB 4337210 4922389 Shew_3636 Shewanella loihica PV-4 transcription elongation factor GreB YP_001095761.1 4336728 R 323850 CDS YP_001095762.1 127514565 4922390 4337617..4338342 1 NC_009092.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4338342 ompR 4922390 ompR Shewanella loihica PV-4 osmolarity response regulator YP_001095762.1 4337617 D 323850 CDS YP_001095763.1 127514566 4922391 4338364..4339674 1 NC_009092.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4339674 envZ 4922391 envZ Shewanella loihica PV-4 osmolarity sensor protein YP_001095763.1 4338364 D 323850 CDS YP_001095764.1 127514567 4922173 4339825..4341783 1 NC_009092.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4341783 4922173 Shew_3639 Shewanella loihica PV-4 methyl-accepting chemotaxis sensory transducer YP_001095764.1 4339825 D 323850 CDS YP_001095765.1 127514568 4922174 4341888..4342733 1 NC_009092.1 hypothetical protein 4342733 4922174 Shew_3640 Shewanella loihica PV-4 hypothetical protein YP_001095765.1 4341888 D 323850 CDS YP_001095766.1 127514569 4922175 complement(4342862..4343398) 1 NC_009092.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3905 redoxin domain protein; redoxin domain-containing protein 4343398 4922175 Shew_3641 Shewanella loihica PV-4 redoxin domain-containing protein YP_001095766.1 4342862 R 323850 CDS YP_001095767.1 127514570 4922176 complement(4343468..4344013) 1 NC_009092.1 KEGG: sfr:Sfri_0214 hypothetical protein; hypothetical protein 4344013 4922176 Shew_3642 Shewanella loihica PV-4 hypothetical protein YP_001095767.1 4343468 R 323850 CDS YP_001095768.1 127514571 4922177 complement(4344040..4344258) 1 NC_009092.1 KEGG: rso:RS01914 hypothetical protein; hypothetical protein 4344258 4922177 Shew_3643 Shewanella loihica PV-4 hypothetical protein YP_001095768.1 4344040 R 323850 CDS YP_001095769.1 127514572 4922178 complement(4344752..4345375) 1 NC_009092.1 hypothetical protein 4345375 4922178 Shew_3644 Shewanella loihica PV-4 hypothetical protein YP_001095769.1 4344752 R 323850 CDS YP_001095770.1 127514573 4922179 complement(4345388..4345882) 1 NC_009092.1 hypothetical protein 4345882 4922179 Shew_3645 Shewanella loihica PV-4 hypothetical protein YP_001095770.1 4345388 R 323850 CDS YP_001095771.1 127514574 4922180 complement(4348350..4348700) 1 NC_009092.1 hypothetical protein 4348700 4922180 Shew_3646 Shewanella loihica PV-4 hypothetical protein YP_001095771.1 4348350 R 323850 CDS YP_001095772.1 127514575 4922181 complement(4348874..4349653) 1 NC_009092.1 PFAM: protein of unknown function DUF548; KEGG: shm:Shewmr7_3921 protein of unknown function DUF548; hypothetical protein 4349653 4922181 Shew_3647 Shewanella loihica PV-4 hypothetical protein YP_001095772.1 4348874 R 323850 CDS YP_001095773.1 127514576 4922182 4349816..4350655 1 NC_009092.1 PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein; hypothetical protein 4350655 4922182 Shew_3648 Shewanella loihica PV-4 hypothetical protein YP_001095773.1 4349816 D 323850 CDS YP_001095774.1 127514577 4922183 complement(4350684..4351046) 1 NC_009092.1 KEGG: sdn:Sden_1152 hypothetical protein; hypothetical protein 4351046 4922183 Shew_3649 Shewanella loihica PV-4 hypothetical protein YP_001095774.1 4350684 R 323850 CDS YP_001095775.1 127514578 4922184 complement(4351052..4351783) 1 NC_009092.1 PFAM: Lytic transglycosylase, catalytic; KEGG: shm:Shewmr7_3923 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 4351783 4922184 Shew_3650 Shewanella loihica PV-4 lytic transglycosylase, catalytic YP_001095775.1 4351052 R 323850 CDS YP_001095776.1 127514579 4922185 complement(4351783..4352793) 1 NC_009092.1 KEGG: shm:Shewmr7_3924 hypothetical protein; hypothetical protein 4352793 4922185 Shew_3651 Shewanella loihica PV-4 hypothetical protein YP_001095776.1 4351783 R 323850 CDS YP_001095777.1 127514580 4922186 complement(4352810..4353379) 1 NC_009092.1 PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein 4353379 4922186 Shew_3652 Shewanella loihica PV-4 LemA family protein YP_001095777.1 4352810 R 323850 CDS YP_001095778.1 127514581 4922187 4353491..4353730 1 NC_009092.1 hypothetical protein 4353730 4922187 Shew_3653 Shewanella loihica PV-4 hypothetical protein YP_001095778.1 4353491 D 323850 CDS YP_001095779.1 127514582 4921876 4354255..4355868 1 NC_009092.1 PFAM: AbgT putative transporter; KEGG: she:Shewmr4_3833 AbgT putative transporter; AbgT transporter 4355868 4921876 Shew_3654 Shewanella loihica PV-4 AbgT transporter YP_001095779.1 4354255 D 323850 CDS YP_001095780.1 127514583 4921877 complement(4355955..4356827) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2875 transcriptional regulator, LysR family; LysR family transcriptional regulator 4356827 4921877 Shew_3655 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095780.1 4355955 R 323850 CDS YP_001095781.1 127514584 4921878 4356921..4357424 1 NC_009092.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_2561 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4357424 4921878 Shew_3656 Shewanella loihica PV-4 glyoxalase/bleomycin resistance protein/dioxygenase YP_001095781.1 4356921 D 323850 CDS YP_001095782.1 127514585 4921879 complement(4357510..4359549) 1 NC_009092.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_3935 oligopeptidase A; oligopeptidase A 4359549 4921879 Shew_3657 Shewanella loihica PV-4 oligopeptidase A YP_001095782.1 4357510 R 323850 CDS YP_001095783.1 127514586 4921880 4359876..4360652 1 NC_009092.1 KEGG: son:SO4700 hypothetical protein; hypothetical protein 4360652 4921880 Shew_3658 Shewanella loihica PV-4 hypothetical protein YP_001095783.1 4359876 D 323850 CDS YP_001095784.1 127514587 4921881 4360773..4361315 1 NC_009092.1 KEGG: son:SO4701 hypothetical protein; hypothetical protein 4361315 4921881 Shew_3659 Shewanella loihica PV-4 hypothetical protein YP_001095784.1 4360773 D 323850 CDS YP_001095785.1 127514588 4921882 4361447..4362802 1 NC_009092.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4362802 4921882 Shew_3660 Shewanella loihica PV-4 glutathione reductase YP_001095785.1 4361447 D 323850 CDS YP_001095786.1 127514589 4921883 complement(4363041..4363409) 1 NC_009092.1 hypothetical protein 4363409 4921883 Shew_3661 Shewanella loihica PV-4 hypothetical protein YP_001095786.1 4363041 R 323850 CDS YP_001095787.1 127514590 4921884 complement(4363954..4364625) 1 NC_009092.1 hypothetical protein 4364625 4921884 Shew_3662 Shewanella loihica PV-4 hypothetical protein YP_001095787.1 4363954 R 323850 CDS YP_001095788.1 127514591 4921885 complement(4364742..4365734) 1 NC_009092.1 hypothetical protein 4365734 4921885 Shew_3663 Shewanella loihica PV-4 hypothetical protein YP_001095788.1 4364742 R 323850 CDS YP_001095789.1 127514592 4921886 4366486..4367391 1 NC_009092.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vpa:VPA0173 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 4367391 4921886 Shew_3664 Shewanella loihica PV-4 alpha-L-glutamate ligase YP_001095789.1 4366486 D 323850 CDS YP_001095790.1 127514593 4921887 4367392..4368414 1 NC_009092.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_2033 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 4368414 4921887 Shew_3665 Shewanella loihica PV-4 succinylglutamate desuccinylase/aspartoacylase YP_001095790.1 4367392 D 323850 CDS YP_001095791.1 127514594 4921888 4368445..4368870 1 NC_009092.1 PFAM: protein of unknown function DUF785; KEGG: sde:Sde_2034 transglutaminase-like; hypothetical protein 4368870 4921888 Shew_3666 Shewanella loihica PV-4 hypothetical protein YP_001095791.1 4368445 D 323850 CDS YP_001095792.1 127514595 4921889 4368994..4370364 1 NC_009092.1 PFAM: MgtE integral membrane region; KEGG: vpa:VPA0778 putataive Mg transporter MgtE; MgtE integral membrane protein 4370364 4921889 Shew_3667 Shewanella loihica PV-4 MgtE integral membrane protein YP_001095792.1 4368994 D 323850 CDS YP_001095793.1 127514596 4921890 4370527..4371483 1 NC_009092.1 PFAM: conserved hypothetical protein 698; KEGG: son:SO4708 hypothetical protein; hypothetical protein 4371483 4921890 Shew_3668 Shewanella loihica PV-4 hypothetical protein YP_001095793.1 4370527 D 323850 CDS YP_001095794.1 127514597 4921753 complement(4371745..4372470) 1 NC_009092.1 PFAM: ThiJ/PfpI domain protein; KEGG: sil:SPOA0286 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein 4372470 4921753 Shew_3669 Shewanella loihica PV-4 ThiJ/PfpI domain-containing protein YP_001095794.1 4371745 R 323850 CDS YP_001095795.1 127514598 4921754 complement(4372600..4373805) 1 NC_009092.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3954 metal dependent phosphohydrolase; metal dependent phosphohydrolase 4373805 4921754 Shew_3670 Shewanella loihica PV-4 metal dependent phosphohydrolase YP_001095795.1 4372600 R 323850 CDS YP_001095796.1 127514599 4921755 complement(4374012..4374218) 1 NC_009092.1 KEGG: shm:Shewmr7_3955 hypothetical protein; hypothetical protein 4374218 4921755 Shew_3671 Shewanella loihica PV-4 hypothetical protein YP_001095796.1 4374012 R 323850 CDS YP_001095797.1 127514600 4921756 complement(4374251..4375006) 1 NC_009092.1 KEGG: shm:Shewmr7_3956 hypothetical protein; hypothetical protein 4375006 4921756 Shew_3672 Shewanella loihica PV-4 hypothetical protein YP_001095797.1 4374251 R 323850 CDS YP_001095798.1 127514601 4921757 complement(4375009..4375548) 1 NC_009092.1 KEGG: shm:Shewmr7_3957 hypothetical protein; hypothetical protein 4375548 4921757 Shew_3673 Shewanella loihica PV-4 hypothetical protein YP_001095798.1 4375009 R 323850 CDS YP_001095799.1 127514602 4921758 complement(4375563..4376216) 1 NC_009092.1 PFAM: cobalt transport protein; KEGG: she:Shewmr4_3865 cobalt transport protein; cobalt transport protein 4376216 4921758 Shew_3674 Shewanella loihica PV-4 cobalt transport protein YP_001095799.1 4375563 R 323850 CDS YP_001095800.1 127514603 4921759 complement(4376224..4377588) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4712 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 4377588 4921759 Shew_3675 Shewanella loihica PV-4 ABC transporter-like protein YP_001095800.1 4376224 R 323850 CDS YP_001095801.1 127514604 4921760 complement(4377598..4379805) 1 NC_009092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3960 TonB-dependent receptor, plug; TonB-dependent receptor, plug 4379805 4921760 Shew_3676 Shewanella loihica PV-4 TonB-dependent receptor, plug YP_001095801.1 4377598 R 323850 CDS YP_001095802.1 127514605 4921761 4380196..4381554 1 NC_009092.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: sfr:Sfri_3913 isochorismate synthases; isochorismate synthase 4381554 4921761 Shew_3677 Shewanella loihica PV-4 isochorismate synthase YP_001095802.1 4380196 D 323850 CDS YP_001095803.1 127514606 4921762 complement(4381556..4382311) 1 NC_009092.1 KEGG: son:SO4714 hypothetical protein; hypothetical protein 4382311 4921762 Shew_3678 Shewanella loihica PV-4 hypothetical protein YP_001095803.1 4381556 R 323850 CDS YP_001095804.1 127514607 4921763 4382549..4383217 1 NC_009092.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 4383217 4921763 Shew_3679 Shewanella loihica PV-4 hypothetical protein YP_001095804.1 4382549 D 323850 CDS YP_001095805.1 127514608 4921764 4383298..4383759 1 NC_009092.1 PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4383759 4921764 Shew_3680 Shewanella loihica PV-4 N-acetyltransferase GCN5 YP_001095805.1 4383298 D 323850 CDS YP_001095806.1 127514609 4921765 complement(4384022..4386163) 1 NC_009092.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3872 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4386163 4921765 Shew_3681 Shewanella loihica PV-4 integral membrane sensor signal transduction histidine kinase YP_001095806.1 4384022 R 323850 CDS YP_001095807.1 127514610 4921766 complement(4386166..4387596) 1 NC_009092.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3966 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 4387596 4921766 Shew_3682 Shewanella loihica PV-4 two component, sigma54 specific, Fis family transcriptional regulator YP_001095807.1 4386166 R 323850 CDS YP_001095808.1 127514611 4921607 4387826..4388638 1 NC_009092.1 KEGG: she:Shewmr4_3874 extracellular solute-binding protein, family 1; extracellular solute-binding protein 4388638 4921607 Shew_3683 Shewanella loihica PV-4 extracellular solute-binding protein YP_001095808.1 4387826 D 323850 CDS YP_001095809.1 127514612 4921608 4388635..4389342 1 NC_009092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4389342 4921608 Shew_3684 Shewanella loihica PV-4 binding-protein-dependent transport system inner membrane protein YP_001095809.1 4388635 D 323850 CDS YP_001095810.1 127514613 4921609 4389345..4390061 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter-like protein 4390061 4921609 Shew_3685 Shewanella loihica PV-4 ABC transporter-like protein YP_001095810.1 4389345 D 323850 CDS YP_001095811.1 127514614 4921610 4390045..4390635 1 NC_009092.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4390635 4921610 Shew_3686 Shewanella loihica PV-4 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001095811.1 4390045 D 323850 CDS YP_001095812.1 127514615 4921611 4390650..4392449 1 NC_009092.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: she:Shewmr4_3878 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4392449 4921611 Shew_3687 Shewanella loihica PV-4 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA YP_001095812.1 4390650 D 323850 CDS YP_001095813.1 127514616 4921612 4392509..4393495 1 NC_009092.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4393495 4921612 Shew_3688 Shewanella loihica PV-4 molybdenum cofactor biosynthesis protein A YP_001095813.1 4392509 D 323850 CDS YP_001095814.1 127514617 4921613 4393559..4394011 1 NC_009092.1 KEGG: shm:Shewmr7_3973 hypothetical protein; hypothetical protein 4394011 4921613 Shew_3689 Shewanella loihica PV-4 hypothetical protein YP_001095814.1 4393559 D 323850 CDS YP_001095815.1 127514618 4921614 4394035..4394850 1 NC_009092.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4394850 4921614 Shew_3690 Shewanella loihica PV-4 formamidopyrimidine-DNA glycosylase YP_001095815.1 4394035 D 323850 CDS YP_001095816.1 127514619 4921615 complement(4395002..4396507) 1 NC_009092.1 KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein 4396507 4921615 Shew_3691 Shewanella loihica PV-4 hypothetical protein YP_001095816.1 4395002 R 323850 CDS YP_001095817.1 127514620 4921616 complement(4396518..4396994) 1 NC_009092.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 4396994 coaD 4921616 coaD Shewanella loihica PV-4 phosphopantetheine adenylyltransferase YP_001095817.1 4396518 R 323850 CDS YP_001095818.1 127514621 4921617 4397285..4398310 1 NC_009092.1 KEGG: sfr:Sfri_3928 ADP-heptose--lipooligosaccharide heptosyltransferase III; ADP-heptose--LPS heptosyltransferase III 4398310 4921617 Shew_3693 Shewanella loihica PV-4 ADP-heptose--LPS heptosyltransferase III YP_001095818.1 4397285 D 323850 CDS YP_001095819.1 127514622 4921618 4398356..4399309 1 NC_009092.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sfr:Sfri_3929 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 4399309 4921618 Shew_3694 Shewanella loihica PV-4 ADP-L-glycero-D-manno-heptose-6-epimerase YP_001095819.1 4398356 D 323850 CDS YP_001095820.1 127514623 4921619 complement(4399371..4399763) 1 NC_009092.1 TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: sfr:Sfri_3930 cytidyltransferase-related domain protein; cytidyltransferase-like protein 4399763 4921619 Shew_3695 Shewanella loihica PV-4 cytidyltransferase-like protein YP_001095820.1 4399371 R 323850 CDS YP_001095821.1 127514624 4921620 complement(4399760..4400776) 1 NC_009092.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sfr:Sfri_3931 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 4400776 4921620 Shew_3696 Shewanella loihica PV-4 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_001095821.1 4399760 R 323850 CDS YP_001095822.1 127514625 4921621 4401146..4402318 1 NC_009092.1 PFAM: glycosyl transferase, family 9; KEGG: sfr:Sfri_3932 ADP-heptose:LPS heptosyltransferase-like protein; glycosyl transferase family protein 4402318 4921621 Shew_3697 Shewanella loihica PV-4 glycosyl transferase family protein YP_001095822.1 4401146 D 323850 CDS YP_001095823.1 127514626 4921210 4402335..4403189 1 NC_009092.1 KEGG: sfr:Sfri_3933 glycosyl transferase, family 8; glycosyl transferase family protein 4403189 4921210 Shew_3698 Shewanella loihica PV-4 glycosyl transferase family protein YP_001095823.1 4402335 D 323850 CDS YP_001095824.1 127514627 4921211 4403439..4404230 1 NC_009092.1 PFAM: glycosyl transferase, family 2; KEGG: vpa:VP0192 hypothetical protein; glycosyl transferase family protein 4404230 4921211 Shew_3699 Shewanella loihica PV-4 glycosyl transferase family protein YP_001095824.1 4403439 D 323850 CDS YP_001095825.1 127514628 4921212 complement(4404227..4405327) 1 NC_009092.1 PFAM: glycosyl transferase, group 1; KEGG: she:Shewmr4_3895 glycosyl transferase, group 1; group 1 glycosyl transferase 4405327 4921212 Shew_3700 Shewanella loihica PV-4 group 1 glycosyl transferase YP_001095825.1 4404227 R 323850 CDS YP_001095826.1 127514629 4921213 complement(4405317..4406393) 1 NC_009092.1 KEGG: pha:PSHAa2321 hypothetical protein; hypothetical protein 4406393 4921213 Shew_3701 Shewanella loihica PV-4 hypothetical protein YP_001095826.1 4405317 R 323850 CDS YP_001095827.1 127514630 4921214 complement(4406512..4407591) 1 NC_009092.1 PFAM: glycosyl transferase, family 9; KEGG: shm:Shewmr7_3988 glycosyl transferase, family 9; glycosyl transferase family protein 4407591 4921214 Shew_3702 Shewanella loihica PV-4 glycosyl transferase family protein YP_001095827.1 4406512 R 323850 CDS YP_001095828.1 127514631 4921215 4407727..4408275 1 NC_009092.1 KEGG: aeh:Mlg_2320 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 4408275 4921215 Shew_3703 Shewanella loihica PV-4 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001095828.1 4407727 D 323850 CDS YP_001095829.1 127514632 4921216 4408268..4409338 1 NC_009092.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pfo:Pfl_0701 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 4409338 4921216 Shew_3704 Shewanella loihica PV-4 dTDP-glucose 4,6-dehydratase YP_001095829.1 4408268 D 323850 CDS YP_001095830.1 127514633 4921217 4409367..4410296 1 NC_009092.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sdn:Sden_2549 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 4410296 4921217 Shew_3705 Shewanella loihica PV-4 dTDP-4-dehydrorhamnose reductase YP_001095830.1 4409367 D 323850 CDS YP_001095831.1 127514634 4921218 4410362..4411087 1 NC_009092.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4411087 4921218 Shew_3706 Shewanella loihica PV-4 3-deoxy-D-manno-octulosonic-acid kinase YP_001095831.1 4410362 D 323850 CDS YP_001095832.1 127514635 4921219 complement(4411115..4412380) 1 NC_009092.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: she:Shewmr4_3898 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 4412380 4921219 Shew_3707 Shewanella loihica PV-4 3-deoxy-D-manno-octulosonic-acid transferase YP_001095832.1 4411115 R 323850 CDS YP_001095833.1 127514636 4921220 4412666..4413319 1 NC_009092.1 PFAM: regulatory protein, TetR; KEGG: sdn:Sden_3614 regulatory protein, TetR; TetR family transcriptional regulator 4413319 4921220 Shew_3708 Shewanella loihica PV-4 TetR family transcriptional regulator YP_001095833.1 4412666 D 323850 CDS YP_001095834.1 127514637 4921221 4413736..4414929 1 NC_009092.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4414929 4921221 Shew_3709 Shewanella loihica PV-4 2-amino-3-ketobutyrate coenzyme A ligase YP_001095834.1 4413736 D 323850 CDS YP_001095835.1 127514638 4921222 4414940..4415965 1 NC_009092.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4415965 tdh 4921222 tdh Shewanella loihica PV-4 L-threonine 3-dehydrogenase YP_001095835.1 4414940 D 323850 CDS YP_001095836.1 127514639 4921223 4416054..4416359 1 NC_009092.1 PFAM: Rhodanese domain protein; KEGG: sdn:Sden_3617 rhodanese-like protein; rhodanese domain-containing protein 4416359 4921223 Shew_3711 Shewanella loihica PV-4 rhodanese domain-containing protein YP_001095836.1 4416054 D 323850 CDS YP_001095837.1 127514640 4921069 4416377..4417213 1 NC_009092.1 PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein; rhomboid family protein 4417213 4921069 Shew_3712 Shewanella loihica PV-4 rhomboid family protein YP_001095837.1 4416377 D 323850 CDS YP_001095838.1 127514641 4921070 complement(4417346..4417999) 1 NC_009092.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain 4417999 4921070 Shew_3713 Shewanella loihica PV-4 isoprenoid biosynthesis protein with amidotransferase-like domain YP_001095838.1 4417346 R 323850 CDS YP_001095839.1 127514642 4921071 4418346..4421138 1 NC_009092.1 KEGG: shm:Shewmr7_3997 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 4421138 4921071 Shew_3714 Shewanella loihica PV-4 DNA polymerase I YP_001095839.1 4418346 D 323850 CDS YP_001095840.1 127514643 4921072 complement(4421920..4422576) 1 NC_009092.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4422576 engB 4921072 engB Shewanella loihica PV-4 ribosome biogenesis GTP-binding protein YsxC YP_001095840.1 4421920 R 323850 CDS YP_001095841.1 127514644 4921073 4422745..4423365 1 NC_009092.1 PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 4423365 4921073 Shew_3716 Shewanella loihica PV-4 cytochrome c, class I YP_001095841.1 4422745 D 323850 CDS YP_001095842.1 127514645 4921074 4424140..4424808 1 NC_009092.1 KEGG: son:SO4727 hypothetical protein; hypothetical protein 4424808 4921074 Shew_3717 Shewanella loihica PV-4 hypothetical protein YP_001095842.1 4424140 D 323850 CDS YP_001095843.1 127514646 4921075 4424856..4425389 1 NC_009092.1 KEGG: son:SO4728 hypothetical protein; hypothetical protein 4425389 4921075 Shew_3718 Shewanella loihica PV-4 hypothetical protein YP_001095843.1 4424856 D 323850 CDS YP_001095844.1 127514647 4921076 4425483..4425950 1 NC_009092.1 KEGG: she:Shewmr4_3910 hypothetical protein; hypothetical protein 4425950 4921076 Shew_3719 Shewanella loihica PV-4 hypothetical protein YP_001095844.1 4425483 D 323850 CDS YP_001095845.1 127514648 4921077 4426159..4427499 1 NC_009092.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4427499 4921077 Shew_3720 Shewanella loihica PV-4 coproporphyrinogen III oxidase YP_001095845.1 4426159 D 323850 CDS YP_001095846.1 127514649 4921078 complement(4427555..4428550) 1 NC_009092.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 4428550 4921078 Shew_3721 Shewanella loihica PV-4 adenosine deaminase YP_001095846.1 4427555 R 323850 CDS YP_001095847.1 127514650 4921079 4428785..4430569 1 NC_009092.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein 4430569 4921079 Shew_3722 Shewanella loihica PV-4 hypothetical protein YP_001095847.1 4428785 D 323850 CDS YP_001095848.1 127514651 4921080 4430676..4431665 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase 4431665 4921080 Shew_3723 Shewanella loihica PV-4 alpha/beta hydrolase YP_001095848.1 4430676 D 323850 CDS YP_001095849.1 127514652 4921081 complement(4431654..4434146) 1 NC_009092.1 KEGG: sfr:Sfri_0038 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4434146 4921081 Shew_3724 Shewanella loihica PV-4 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001095849.1 4431654 R 323850 CDS YP_001095850.1 127514653 4923846 4440161..4440718 1 NC_009092.1 KEGG: she:Shewmr4_0039 carbonic anhydrase, family 3; carbonic anhydrase 4440718 4923846 Shew_3725 Shewanella loihica PV-4 carbonic anhydrase YP_001095850.1 4440161 D 323850 CDS YP_001095851.1 127514654 4921083 complement(4440853..4441125) 1 NC_009092.1 PFAM: protein of unknown function DUF1488; KEGG: vpa:VP3032 hypothetical protein; hypothetical protein 4441125 4921083 Shew_3726 Shewanella loihica PV-4 hypothetical protein YP_001095851.1 4440853 R 323850 CDS YP_001095852.1 127514655 4921021 complement(4441164..4442078) 1 NC_009092.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4442078 aroE 4921021 aroE Shewanella loihica PV-4 shikimate 5-dehydrogenase YP_001095852.1 4441164 R 323850 CDS YP_001095853.1 127514656 4921022 4442180..4442608 1 NC_009092.1 PFAM: globin; KEGG: sdn:Sden_0031 globin; globin 4442608 4921022 Shew_3728 Shewanella loihica PV-4 globin YP_001095853.1 4442180 D 323850 CDS YP_001095854.1 127514657 4921023 complement(4442665..4443576) 1 NC_009092.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 4443576 4921023 Shew_3729 Shewanella loihica PV-4 coproporphyrinogen III oxidase YP_001095854.1 4442665 R 323850 CDS YP_001095855.1 127514658 4921024 complement(4443595..4444152) 1 NC_009092.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 4444152 4921024 Shew_3730 Shewanella loihica PV-4 Sua5/YciO/YrdC/YwlC family protein YP_001095855.1 4443595 R 323850 CDS YP_001095856.1 127514659 4921025 complement(4444254..4444817) 1 NC_009092.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: shm:Shewmr7_0031 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 4444817 4921025 Shew_3731 Shewanella loihica PV-4 DNA topoisomerase type IA Zn finger domain-containing protein YP_001095856.1 4444254 R 323850 CDS YP_001095857.1 127514660 4921026 4444955..4446766 1 NC_009092.1 PFAM: Peptidase M9A, collagenase C-terminal domain protein; KEGG: cps:CPS_2237 microbial collagenase; collagenase 4446766 4921026 Shew_3732 Shewanella loihica PV-4 collagenase YP_001095857.1 4444955 D 323850 CDS YP_001095858.1 127514661 4921027 complement(4446824..4447297) 1 NC_009092.1 PFAM: protein of unknown function DUF494; KEGG: sfr:Sfri_0027 protein of unknown function DUF494; hypothetical protein 4447297 4921027 Shew_3733 Shewanella loihica PV-4 hypothetical protein YP_001095858.1 4446824 R 323850 CDS YP_001095859.1 127514662 4921028 complement(4447300..4448319) 1 NC_009092.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative; DNA protecting protein DprA 4448319 4921028 Shew_3734 Shewanella loihica PV-4 DNA protecting protein DprA YP_001095859.1 4447300 R 323850 CDS YP_001095860.1 127514663 4921029 complement(4448408..4449505) 1 NC_009092.1 PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein; peptidoglycan-binding LysM 4449505 4921029 Shew_3735 Shewanella loihica PV-4 peptidoglycan-binding LysM YP_001095860.1 4448408 R 323850 CDS YP_001095861.1 127514664 4921030 4449631..4450143 1 NC_009092.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4450143 def 4921030 def Shewanella loihica PV-4 peptide deformylase YP_001095861.1 4449631 D 323850 CDS YP_001095862.1 127514665 4921031 4450151..4451125 1 NC_009092.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfr:Sfri_0023 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4451125 4921031 Shew_3737 Shewanella loihica PV-4 methionyl-tRNA formyltransferase YP_001095862.1 4450151 D 323850 CDS YP_001095863.1 127514666 4921032 4451122..4452405 1 NC_009092.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: she:Shewmr4_0027 sun protein; sun protein 4452405 4921032 Shew_3738 Shewanella loihica PV-4 sun protein YP_001095863.1 4451122 D 323850 CDS YP_001095864.1 127514667 4921033 4452415..4453824 1 NC_009092.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 4453824 trkA 4921033 trkA Shewanella loihica PV-4 potassium transporter peripheral membrane protein YP_001095864.1 4452415 D 323850 CDS YP_001095865.1 127514668 4921034 4453855..4455297 1 NC_009092.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0023 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 4455297 4921034 Shew_3740 Shewanella loihica PV-4 TrkH family potassium uptake protein YP_001095865.1 4453855 D 323850 CDS YP_001095866.1 127514669 4920916 complement(4455319..4456515) 1 NC_009092.1 PFAM: protein of unknown function DUF890; KEGG: she:Shewmr4_0128 protein of unknown function DUF890; putative SAM-dependent methyltransferase 4456515 4920916 Shew_3741 Shewanella loihica PV-4 putative SAM-dependent methyltransferase YP_001095866.1 4455319 R 323850 CDS YP_001095867.1 127514670 4920917 complement(4456560..4456967) 1 NC_009092.1 PFAM: flagellar basal body-associated protein FliL; KEGG: sfr:Sfri_0049 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 4456967 4920917 Shew_3742 Shewanella loihica PV-4 flagellar basal body-associated protein FliL-like protein YP_001095867.1 4456560 R 323850 CDS YP_001095868.1 127514671 4920918 4457143..4457709 1 NC_009092.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase 4457709 4920918 Shew_3743 Shewanella loihica PV-4 chorismate lyase YP_001095868.1 4457143 D 323850 CDS YP_001095869.1 127514672 4920919 complement(4457740..4460595) 1 NC_009092.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: sfr:Sfri_0047 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A 4460595 4920919 Shew_3744 Shewanella loihica PV-4 peptidase M6, immune inhibitor A YP_001095869.1 4457740 R 323850 CDS YP_001095870.1 127514673 4920920 complement(4460984..4463200) 1 NC_009092.1 PFAM: glycoside hydrolase, family 37; KEGG: cpr:CPR_0360 cell wall surface anchor family protein; glycoside hydrolase 4463200 4920920 Shew_3745 Shewanella loihica PV-4 glycoside hydrolase YP_001095870.1 4460984 R 323850 CDS YP_001095871.1 127514674 4920921 complement(4463404..4463997) 1 NC_009092.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 4463997 4920921 Shew_3746 Shewanella loihica PV-4 multiple antibiotic resistance (MarC)-like protein YP_001095871.1 4463404 R 323850 CDS YP_001095872.1 127514675 4920922 4464226..4465848 1 NC_009092.1 KEGG: she:Shewmr4_0122 hypothetical protein; hypothetical protein 4465848 4920922 Shew_3747 Shewanella loihica PV-4 hypothetical protein YP_001095872.1 4464226 D 323850 CDS YP_001095873.1 127514676 4920923 4465911..4466717 1 NC_009092.1 PFAM: protein of unknown function DUF833; KEGG: she:Shewmr4_0121 protein of unknown function DUF833; hypothetical protein 4466717 4920923 Shew_3748 Shewanella loihica PV-4 hypothetical protein YP_001095873.1 4465911 D 323850 CDS YP_001095874.1 127514677 4920924 complement(4466714..4467136) 1 NC_009092.1 KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein 4467136 4920924 Shew_3749 Shewanella loihica PV-4 hypothetical protein YP_001095874.1 4466714 R 323850 CDS YP_001095875.1 127514678 4920925 4467245..4467796 1 NC_009092.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_0119 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4467796 4920925 Shew_3750 Shewanella loihica PV-4 phospholipid/glycerol acyltransferase YP_001095875.1 4467245 D 323850 CDS YP_001095876.1 127514679 4920926 4467872..4468495 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_0113 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4468495 4920926 Shew_3751 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001095876.1 4467872 D 323850 CDS YP_001095877.1 127514680 4920927 complement(4468492..4469742) 1 NC_009092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0112 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4469742 4920927 Shew_3752 Shewanella loihica PV-4 mechanosensitive ion channel protein MscS YP_001095877.1 4468492 R 323850 CDS YP_001095878.1 127514681 4920928 4469926..4470450 1 NC_009092.1 KEGG: son:SO0120 hypothetical protein; hypothetical protein 4470450 4920928 Shew_3753 Shewanella loihica PV-4 hypothetical protein YP_001095878.1 4469926 D 323850 CDS YP_001095879.1 127514682 4920929 4470544..4471221 1 NC_009092.1 KEGG: sfr:Sfri_3611 hypothetical protein; hypothetical protein 4471221 4920929 Shew_3754 Shewanella loihica PV-4 hypothetical protein YP_001095879.1 4470544 D 323850 CDS YP_001095880.1 127514683 4920930 complement(4471287..4471766) 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_1838 thioesterase superfamily protein; thioesterase superfamily protein 4471766 4920930 Shew_3755 Shewanella loihica PV-4 thioesterase superfamily protein YP_001095880.1 4471287 R 323850 CDS YP_001095881.1 127514684 4920748 complement(4471917..4473449) 1 NC_009092.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 4473449 4920748 Shew_3756 Shewanella loihica PV-4 histidine ammonia-lyase YP_001095881.1 4471917 R 323850 CDS YP_001095882.1 127514685 4920749 complement(4473477..4475147) 1 NC_009092.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 4475147 4920749 Shew_3757 Shewanella loihica PV-4 urocanate hydratase YP_001095882.1 4473477 R 323850 CDS YP_001095883.1 127514686 4920750 complement(4475271..4475978) 1 NC_009092.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: she:Shewmr4_0098 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 4475978 4920750 Shew_3758 Shewanella loihica PV-4 histidine utilization repressor YP_001095883.1 4475271 R 323850 CDS YP_001095884.1 127514687 4920751 4476162..4477388 1 NC_009092.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 4477388 4920751 Shew_3759 Shewanella loihica PV-4 imidazolonepropionase YP_001095884.1 4476162 D 323850 CDS YP_001095885.1 127514688 4920752 4477818..4479446 1 NC_009092.1 PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3526 kap P-loop; KAP P-loop domain-containing protein 4479446 4920752 Shew_3760 Shewanella loihica PV-4 KAP P-loop domain-containing protein YP_001095885.1 4477818 D 323850 CDS YP_001095886.1 127514689 4920753 complement(4479829..4480053) 1 NC_009092.1 KEGG: mag:amb2065 hypothetical protein; hypothetical protein 4480053 4920753 Shew_3761 Shewanella loihica PV-4 hypothetical protein YP_001095886.1 4479829 R 323850 CDS YP_001095887.1 127514690 4920754 4480367..4481443 1 NC_009092.1 hypothetical protein 4481443 4920754 Shew_3762 Shewanella loihica PV-4 hypothetical protein YP_001095887.1 4480367 D 323850 CDS YP_001095888.1 127514691 4920755 complement(4481475..4482005) 1 NC_009092.1 PFAM: regulatory protein, LuxR; KEGG: she:Shewmr4_3855 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 4482005 4920755 Shew_3763 Shewanella loihica PV-4 LuxR family transcriptional regulator YP_001095888.1 4481475 R 323850 CDS YP_001095889.1 127514692 4920756 4482242..4483474 1 NC_009092.1 KEGG: shm:Shewmr7_3949 hypothetical protein; hypothetical protein 4483474 4920756 Shew_3764 Shewanella loihica PV-4 hypothetical protein YP_001095889.1 4482242 D 323850 CDS YP_001095890.1 127514693 4920757 4483471..4484511 1 NC_009092.1 KEGG: shm:Shewmr7_3950 hypothetical protein; hypothetical protein 4484511 4920757 Shew_3765 Shewanella loihica PV-4 hypothetical protein YP_001095890.1 4483471 D 323850 CDS YP_001095891.1 127514694 4920758 4484513..4487566 1 NC_009092.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3951 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4487566 4920758 Shew_3766 Shewanella loihica PV-4 CzcA family heavy metal efflux protein YP_001095891.1 4484513 D 323850 CDS YP_001095892.1 127514695 4920759 4487563..4487868 1 NC_009092.1 KEGG: shm:Shewmr7_3952 hypothetical protein; hypothetical protein 4487868 4920759 Shew_3767 Shewanella loihica PV-4 hypothetical protein YP_001095892.1 4487563 D 323850 CDS YP_001095893.1 127514696 4920760 complement(4487925..4488872) 1 NC_009092.1 KEGG: she:Shewmr4_0541 hypothetical protein; hypothetical protein 4488872 4920760 Shew_3768 Shewanella loihica PV-4 hypothetical protein YP_001095893.1 4487925 R 323850 CDS YP_001095894.1 127514697 4920761 complement(4489146..4490297) 1 NC_009092.1 KEGG: sfr:Sfri_3965 hypothetical protein; hypothetical protein 4490297 4920761 Shew_3769 Shewanella loihica PV-4 hypothetical protein YP_001095894.1 4489146 R 323850 CDS YP_001095895.1 127514698 4920762 complement(4490341..4491147) 1 NC_009092.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4491147 4920762 Shew_3770 Shewanella loihica PV-4 Sel1 domain-containing protein YP_001095895.1 4490341 R 323850 CDS YP_001095896.1 127514699 4924191 4491388..4492065 1 NC_009092.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4492065 4924191 Shew_3771 Shewanella loihica PV-4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_001095896.1 4491388 D 323850 CDS YP_001095897.1 127514700 4924192 4492259..4492687 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_0084 thioesterase superfamily protein; thioesterase superfamily protein 4492687 4924192 Shew_3772 Shewanella loihica PV-4 thioesterase superfamily protein YP_001095897.1 4492259 D 323850 CDS YP_001095898.1 127514701 4924193 complement(4492705..4493745) 1 NC_009092.1 KEGG: vfi:VFA0508 hypothetical protein; hypothetical protein 4493745 4924193 Shew_3773 Shewanella loihica PV-4 hypothetical protein YP_001095898.1 4492705 R 323850 CDS YP_001095899.1 127514702 4924194 4493765..4494091 1 NC_009092.1 KEGG: she:Shewmr4_0083 hypothetical protein; acetyltransferase 4494091 4924194 Shew_3774 Shewanella loihica PV-4 acetyltransferase YP_001095899.1 4493765 D 323850 CDS YP_001095900.1 127514703 4924195 complement(4494097..4494501) 1 NC_009092.1 PFAM: thioesterase superfamily protein; KEGG: sdn:Sden_0073 thioesterase superfamily; thioesterase superfamily protein 4494501 4924195 Shew_3775 Shewanella loihica PV-4 thioesterase superfamily protein YP_001095900.1 4494097 R 323850 CDS YP_001095901.1 127514704 4924196 complement(4494661..4496457) 1 NC_009092.1 PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_0076 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4496457 4924196 Shew_3776 Shewanella loihica PV-4 AMP-dependent synthetase and ligase YP_001095901.1 4494661 R 323850 CDS YP_001095902.1 127514705 4924197 complement(4496585..4497847) 1 NC_009092.1 KEGG: son:SO0074 hypothetical protein; hypothetical protein 4497847 4924197 Shew_3777 Shewanella loihica PV-4 hypothetical protein YP_001095902.1 4496585 R 323850 CDS YP_001095903.1 127514706 4924198 complement(4497844..4498695) 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0074 ABC transporter-related protein; ABC transporter-like protein 4498695 4924198 Shew_3778 Shewanella loihica PV-4 ABC transporter-like protein YP_001095903.1 4497844 R 323850 CDS YP_001095904.1 127514707 4924199 complement(4498704..4499084) 1 NC_009092.1 PFAM: regulatory protein GntR, HTH; KEGG: sfr:Sfri_3976 transcriptional regulator, GntR family protein; GntR family transcriptional regulator 4499084 4924199 Shew_3779 Shewanella loihica PV-4 GntR family transcriptional regulator YP_001095904.1 4498704 R 323850 CDS YP_001095905.1 127514708 4924200 4499200..4500753 1 NC_009092.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; TAP domain-containing protein 4500753 4924200 Shew_3780 Shewanella loihica PV-4 TAP domain-containing protein YP_001095905.1 4499200 D 323850 CDS YP_001095906.1 127514709 4924201 4500746..4501480 1 NC_009092.1 PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein 4501480 4924201 Shew_3781 Shewanella loihica PV-4 ABC transporter-like protein YP_001095906.1 4500746 D 323850 CDS YP_001095907.1 127514710 4924202 4501477..4502613 1 NC_009092.1 PFAM: ABC-2 type transporter; KEGG: sfr:Sfri_3979 ABC-2 type transporter; ABC transporter 4502613 4924202 Shew_3782 Shewanella loihica PV-4 ABC transporter YP_001095907.1 4501477 D 323850 CDS YP_001095908.1 127514711 4924203 4502669..4502917 1 NC_009092.1 KEGG: sfr:Sfri_3980 hypothetical protein; hypothetical protein 4502917 4924203 Shew_3783 Shewanella loihica PV-4 hypothetical protein YP_001095908.1 4502669 D 323850 CDS YP_001095909.1 127514712 4924204 4503119..4503370 1 NC_009092.1 hypothetical protein 4503370 4924204 Shew_3784 Shewanella loihica PV-4 hypothetical protein YP_001095909.1 4503119 D 323850 CDS YP_001095910.1 127514713 4924176 complement(4503475..4504482) 1 NC_009092.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: shm:Shewmr7_0068 transcriptional regulator, AraC family; AraC family transcriptional regulator 4504482 4924176 Shew_3785 Shewanella loihica PV-4 AraC family transcriptional regulator YP_001095910.1 4503475 R 323850 CDS YP_001095911.1 127514714 4924177 4504608..4504787 1 NC_009092.1 KEGG: shm:Shewmr7_0067 hypothetical protein; hypothetical protein 4504787 4924177 Shew_3786 Shewanella loihica PV-4 hypothetical protein YP_001095911.1 4504608 D 323850 CDS YP_001095912.1 127514715 4924178 complement(4504858..4505391) 1 NC_009092.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 4505391 mogA 4924178 mogA Shewanella loihica PV-4 molybdenum cofactor biosynthesis protein MogA YP_001095912.1 4504858 R 323850 CDS YP_001095913.1 127514716 4924179 complement(4505567..4508695) 1 NC_009092.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: hch:HCH_00809 signal transduction histidine kinase; multi-sensor hybrid histidine kinase 4508695 4924179 Shew_3788 Shewanella loihica PV-4 multi-sensor hybrid histidine kinase YP_001095913.1 4505567 R 323850 CDS YP_001095914.1 127514717 4924180 complement(4508699..4509661) 1 NC_009092.1 KEGG: sde:Sde_0403 ABC-type nitrate/sulfonate/bicarbonate transport system protein; ABC-type nitrate/sulfonate/bicarbonate transport system protein 4509661 4924180 Shew_3789 Shewanella loihica PV-4 ABC-type nitrate/sulfonate/bicarbonate transport system protein YP_001095914.1 4508699 R 323850 CDS YP_001095915.1 127514718 4924181 complement(4509675..4510577) 1 NC_009092.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain); response regulator receiver modulated diguanylate cyclase 4510577 4924181 Shew_3790 Shewanella loihica PV-4 response regulator receiver modulated diguanylate cyclase YP_001095915.1 4509675 R 323850 CDS YP_001095916.1 127514719 4924182 complement(4510807..4511463) 1 NC_009092.1 hypothetical protein 4511463 4924182 Shew_3791 Shewanella loihica PV-4 hypothetical protein YP_001095916.1 4510807 R 323850 CDS YP_001095917.1 127514720 4924183 complement(4512243..4512614) 1 NC_009092.1 hypothetical protein 4512614 4924183 Shew_3792 Shewanella loihica PV-4 hypothetical protein YP_001095917.1 4512243 R 323850 CDS YP_001095918.1 127514721 4924184 complement(4512647..4513786) 1 NC_009092.1 KEGG: cps:CPS_0419 hypothetical protein; hypothetical protein 4513786 4924184 Shew_3793 Shewanella loihica PV-4 hypothetical protein YP_001095918.1 4512647 R 323850 CDS YP_001095919.1 127514722 4924185 complement(4513866..4514213) 1 NC_009092.1 hypothetical protein 4514213 4924185 Shew_3794 Shewanella loihica PV-4 hypothetical protein YP_001095919.1 4513866 R 323850 CDS YP_001095920.1 127514723 4924186 complement(4514334..4514756) 1 NC_009092.1 PFAM: transmembrane pair domain protein; KEGG: par:Psyc_0621 hypothetical protein; transmembrane pair domain-containing protein 4514756 4924186 Shew_3795 Shewanella loihica PV-4 transmembrane pair domain-containing protein YP_001095920.1 4514334 R 323850 CDS YP_001095921.1 127514724 4924187 complement(4514854..4517982) 1 NC_009092.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: vpa:VPA0471 putative multidrug efflux membrane fusion protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4517982 4924187 Shew_3796 Shewanella loihica PV-4 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001095921.1 4514854 R 323850 CDS YP_001095922.1 127514725 4924188 complement(4517989..4519119) 1 NC_009092.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vpa:VPA1191 putative multidrug efflux membrane fusion protein; RND family efflux transporter MFP subunit 4519119 4924188 Shew_3797 Shewanella loihica PV-4 RND family efflux transporter MFP subunit YP_001095922.1 4517989 R 323850 CDS YP_001095923.1 127514726 4924189 complement(4519559..4520431) 1 NC_009092.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_0510 transcriptional regulator, LysR family; LysR family transcriptional regulator 4520431 4924189 Shew_3798 Shewanella loihica PV-4 LysR family transcriptional regulator YP_001095923.1 4519559 R 323850 CDS YP_001095924.1 127514727 4924190 4520536..4521231 1 NC_009092.1 KEGG: ppr:PBPRB0103 hypothetical protein; hypothetical protein 4521231 4924190 Shew_3799 Shewanella loihica PV-4 hypothetical protein YP_001095924.1 4520536 D 323850 CDS YP_001095925.1 127514728 4924154 complement(4521294..4522394) 1 NC_009092.1 KEGG: nar:Saro_2604 major facilitator superfamily MFS_1; hypothetical protein 4522394 4924154 Shew_3800 Shewanella loihica PV-4 hypothetical protein YP_001095925.1 4521294 R 323850 CDS YP_001095926.1 127514729 4924155 complement(4522682..4524925) 1 NC_009092.1 PFAM: peptidase S41; KEGG: bth:BT3291 hypothetical protein; peptidase S41 4524925 4924155 Shew_3801 Shewanella loihica PV-4 peptidase S41 YP_001095926.1 4522682 R 323850 CDS YP_001095927.1 127514730 4924156 complement(4525075..4526259) 1 NC_009092.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0049 HI0933 family protein; hypothetical protein 4526259 4924156 Shew_3802 Shewanella loihica PV-4 hypothetical protein YP_001095927.1 4525075 R 323850 CDS YP_001095928.1 127514731 4924157 complement(4526514..4527533) 1 NC_009092.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4527533 gpsA 4924157 gpsA Shewanella loihica PV-4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001095928.1 4526514 R 323850 CDS YP_001095929.1 127514732 4924158 complement(4527540..4528028) 1 NC_009092.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4528028 4924158 Shew_3804 Shewanella loihica PV-4 preprotein translocase subunit SecB YP_001095929.1 4527540 R 323850 CDS YP_001095930.1 127514733 4924159 complement(4528236..4528748) 1 NC_009092.1 PFAM: Rhodanese domain protein; KEGG: sfr:Sfri_4020 rhodanese domain protein; rhodanese domain-containing protein 4528748 4924159 Shew_3805 Shewanella loihica PV-4 rhodanese domain-containing protein YP_001095930.1 4528236 R 323850 CDS YP_001095931.1 127514734 4924160 4528912..4530456 1 NC_009092.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4530456 4924160 Shew_3806 Shewanella loihica PV-4 phosphoglyceromutase YP_001095931.1 4528912 D 323850 CDS YP_001095932.1 127514735 4924161 4530515..4531600 1 NC_009092.1 PFAM: peptidase M23B; KEGG: shm:Shewmr7_0042 peptidase M23B; peptidase M23B 4531600 4924161 Shew_3807 Shewanella loihica PV-4 peptidase M23B YP_001095932.1 4530515 D 323850 CDS YP_001095933.1 127514736 4924162 4531636..4532841 1 NC_009092.1 KEGG: she:Shewmr4_0043 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4532841 4924162 Shew_3808 Shewanella loihica PV-4 carboxyl-terminal protease YP_001095933.1 4531636 D 323850 CDS YP_001095934.1 127514737 4924163 4532857..4533612 1 NC_009092.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein 4533612 4924163 Shew_3809 Shewanella loihica PV-4 hypothetical protein YP_001095934.1 4532857 D 323850 CDS YP_001095935.1 127514738 4924164 complement(4533634..4534086) 1 NC_009092.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: she:Shewmr4_0041 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 4534086 4924164 Shew_3810 Shewanella loihica PV-4 BadM/Rrf2 family transcriptional regulator YP_001095935.1 4533634 R 323850 CDS YP_001095936.1 127514739 4924165 complement(4534097..4534351) 1 NC_009092.1 PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_3703 protein of unknown function UPF0153; hypothetical protein 4534351 4924165 Shew_3811 Shewanella loihica PV-4 hypothetical protein YP_001095936.1 4534097 R 323850 CDS YP_001095937.1 127514740 4923849 complement(4540595..4542022) 1 NC_009092.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3916 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4542022 4923849 Shew_3812 Shewanella loihica PV-4 4Fe-4S ferredoxin YP_001095937.1 4540595 R 323850 CDS YP_001095938.1 127514741 4924167 4542111..4542464 1 NC_009092.1 KEGG: sfr:Sfri_4029 hypothetical protein; hypothetical protein 4542464 4924167 Shew_3813 Shewanella loihica PV-4 hypothetical protein YP_001095938.1 4542111 D 323850 CDS YP_001095939.1 127514742 4922819 4542586..4543488 1 NC_009092.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4543488 4922819 Shew_3814 Shewanella loihica PV-4 naphthoate synthase YP_001095939.1 4542586 D 323850 CDS YP_001095940.1 127514743 4922820 4543723..4543914 1 NC_009092.1 KEGG: son:SO4740 hypothetical protein; hypothetical protein 4543914 4922820 Shew_3815 Shewanella loihica PV-4 hypothetical protein YP_001095940.1 4543723 D 323850 CDS YP_001095941.1 127514744 4922821 4544107..4544649 1 NC_009092.1 KEGG: shm:Shewmr7_0816 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 4544649 4922821 Shew_3816 Shewanella loihica PV-4 OmpA domain-containing protein YP_001095941.1 4544107 D 323850 CDS YP_001095942.1 127514745 4922822 complement(4544752..4545102) 1 NC_009092.1 KEGG: sfr:Sfri_0213 likely secreted protein containing plastocyanin domain; plastocyanin domain-containing protein 4545102 4922822 Shew_3817 Shewanella loihica PV-4 plastocyanin domain-containing protein YP_001095942.1 4544752 R 323850 CDS YP_001095943.1 127514746 4922823 complement(4545112..4547355) 1 NC_009092.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_0212 copper-translocating P-type ATPase; copper-translocating P-type ATPase 4547355 4922823 Shew_3818 Shewanella loihica PV-4 copper-translocating P-type ATPase YP_001095943.1 4545112 R 323850 CDS YP_001095944.1 127514747 4922824 complement(4547358..4547819) 1 NC_009092.1 PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_0211 transcriptional regulator, MerR family protein; MerR family transcriptional regulator 4547819 4922824 Shew_3819 Shewanella loihica PV-4 MerR family transcriptional regulator YP_001095944.1 4547358 R 323850 CDS YP_001095945.1 127514748 4922825 complement(4548184..4548615) 1 NC_009092.1 hypothetical protein 4548615 4922825 Shew_3820 Shewanella loihica PV-4 hypothetical protein YP_001095945.1 4548184 R 323850 CDS YP_001095946.1 127514749 4922826 complement(4548685..4551297) 1 NC_009092.1 KEGG: she:Shewmr4_2521 hypothetical protein; hypothetical protein 4551297 4922826 Shew_3821 Shewanella loihica PV-4 hypothetical protein YP_001095946.1 4548685 R 323850 CDS YP_001095947.1 127514750 4922827 complement(4551316..4552284) 1 NC_009092.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2522 AAA ATPase, central domain protein; ATPase central domain-containing protein 4552284 4922827 Shew_3822 Shewanella loihica PV-4 ATPase central domain-containing protein YP_001095947.1 4551316 R 323850 CDS YP_001095948.1 127514751 4922828 4552430..4552723 1 NC_009092.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 4552723 4922828 Shew_3823 Shewanella loihica PV-4 XRE family transcriptional regulator YP_001095948.1 4552430 D 323850 CDS YP_001095949.1 127514752 4922829 complement(4552754..4554352) 1 NC_009092.1 KEGG: ilo:IL2609 transposon Tn7 transposition transposition regulatory protein TnsE; hypothetical protein 4554352 4922829 Shew_3824 Shewanella loihica PV-4 hypothetical protein YP_001095949.1 4552754 R 323850 CDS YP_001095950.1 127514753 4922830 complement(4554310..4555854) 1 NC_009092.1 KEGG: ssn:SSO_3894 transposition protein; transposition protein 4555854 4922830 Shew_3825 Shewanella loihica PV-4 transposition protein YP_001095950.1 4554310 R 323850 CDS YP_001095951.1 127514754 4922831 complement(4555855..4557492) 1 NC_009092.1 KEGG: ilo:IL2611 transposon Tn7 transposition protein TnsC; transposon Tn7 transposition protein TnsC 4557492 4922831 Shew_3826 Shewanella loihica PV-4 transposon Tn7 transposition protein TnsC YP_001095951.1 4555855 R 323850 CDS YP_001095952.1 127514755 4922832 complement(4557489..4559579) 1 NC_009092.1 KEGG: ilo:IL2612 transposon Tn7 transposition protein TnsB; transposon Tn7 transposition protein TnsB 4559579 4922832 Shew_3827 Shewanella loihica PV-4 transposon Tn7 transposition protein TnsB YP_001095952.1 4557489 R 323850 CDS YP_001095953.1 127514756 4922833 complement(4559563..4560390) 1 NC_009092.1 KEGG: ilo:IL2613 transposon Tn7 transposition protein TnsA; transposon Tn7 transposition protein TnsA 4560390 4922833 Shew_3828 Shewanella loihica PV-4 transposon Tn7 transposition protein TnsA YP_001095953.1 4559563 R 323850 CDS YP_001095954.1 127514757 4924236 4560548..4560856 1 NC_009092.1 PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein 4560856 4924236 Shew_3829 Shewanella loihica PV-4 transposase IS3/IS911 family protein YP_001095954.1 4560548 D 323850 CDS YP_001095955.1 127514758 4924237 4560988..4561722 1 NC_009092.1 PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit 4561722 4924237 Shew_3830 Shewanella loihica PV-4 integrase catalytic subunit YP_001095955.1 4560988 D 323850 CDS YP_001095956.1 127514759 4923850 4562232..4564238 1 NC_009092.1 KEGG: spt:SPA1006 putative hydrolase; putative hydrolase 4564238 4923850 Shew_3832 Shewanella loihica PV-4 putative hydrolase YP_001095956.1 4562232 D 323850 CDS YP_001095957.1 127514760 4923852 complement(4565624..4565800) 1 NC_009092.1 KEGG: ppr:PBPRA1825 hypothetical ISPpu15, transposase Orf2; ISPpu15, transposase Orf2 4565800 4923852 Shew_3835 Shewanella loihica PV-4 ISPpu15, transposase Orf2 YP_001095957.1 4565624 R 323850 CDS YP_001095958.1 127514761 4924240 complement(4565860..4566213) 1 NC_009092.1 PFAM: IS66 Orf2 family protein; KEGG: ppr:PBPRA1824 hypothetical protein; IS66 Orf2 family protein 4566213 4924240 Shew_3836 Shewanella loihica PV-4 IS66 Orf2 family protein YP_001095958.1 4565860 R 323850 CDS YP_001095959.1 127514762 4924241 complement(4566210..4566530) 1 NC_009092.1 KEGG: vvy:VV2228 hypothetical protein; hypothetical protein 4566530 4924241 Shew_3837 Shewanella loihica PV-4 hypothetical protein YP_001095959.1 4566210 R 323850 CDS YP_001095960.1 127514763 4924242 complement(4566687..4567667) 1 NC_009092.1 PFAM: transposase, IS4 family protein; KEGG: vch:VCA0472 IS5 transposase; transposase, IS4 family protein 4567667 4924242 Shew_3838 Shewanella loihica PV-4 transposase, IS4 family protein YP_001095960.1 4566687 R 323850 CDS YP_001095961.1 127514764 4924243 complement(4569026..4570855) 1 NC_009092.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4570855 4924243 Shew_3839 Shewanella loihica PV-4 glucosamine--fructose-6-phosphate aminotransferase YP_001095961.1 4569026 R 323850 CDS YP_001095962.1 127514765 4924244 complement(4570891..4571661) 1 NC_009092.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: shm:Shewmr7_4013 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 4571661 4924244 Shew_3840 Shewanella loihica PV-4 DeoR family transcriptional regulator YP_001095962.1 4570891 R 323850 CDS YP_001095963.1 127514766 4924245 complement(4571807..4573945) 1 NC_009092.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3922 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 4573945 4924245 Shew_3841 Shewanella loihica PV-4 TonB-dependent siderophore receptor YP_001095963.1 4571807 R 323850 CDS YP_001095964.1 127514767 4924246 complement(4574156..4575520) 1 NC_009092.1 KEGG: sfr:Sfri_4043 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase 4575520 4924246 Shew_3842 Shewanella loihica PV-4 UDP-N-acetylglucosamine pyrophosphorylase YP_001095964.1 4574156 R 323850 CDS YP_001095965.1 127514768 4924247 complement(4575632..4575985) 1 NC_009092.1 PFAM: DsrE family protein; KEGG: ppr:PBPRB1553 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE family protein 4575985 4924247 Shew_3843 Shewanella loihica PV-4 DsrE family protein YP_001095965.1 4575632 R 323850 CDS YP_001095966.1 127514769 4924248 complement(4576150..4576578) 1 NC_009092.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4576578 atpC 4924248 atpC Shewanella loihica PV-4 F0F1 ATP synthase subunit epsilon YP_001095966.1 4576150 R 323850 CDS YP_001095967.1 127514770 4924249 complement(4576612..4577988) 1 NC_009092.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4577988 4924249 Shew_3845 Shewanella loihica PV-4 F0F1 ATP synthase subunit beta YP_001095967.1 4576612 R 323850 CDS YP_001095968.1 127514771 4924010 complement(4578024..4578884) 1 NC_009092.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4578884 4924010 Shew_3846 Shewanella loihica PV-4 F0F1 ATP synthase subunit gamma YP_001095968.1 4578024 R 323850 CDS YP_001095969.1 127514772 4924011 complement(4578934..4580475) 1 NC_009092.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4580475 4924011 Shew_3847 Shewanella loihica PV-4 F0F1 ATP synthase subunit alpha YP_001095969.1 4578934 R 323850 CDS YP_001095970.1 127514773 4924012 complement(4580490..4581023) 1 NC_009092.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4581023 4924012 Shew_3848 Shewanella loihica PV-4 F0F1 ATP synthase subunit delta YP_001095970.1 4580490 R 323850 CDS YP_001095971.1 127514774 4924013 complement(4581038..4581508) 1 NC_009092.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4581508 4924013 Shew_3849 Shewanella loihica PV-4 F0F1 ATP synthase subunit B YP_001095971.1 4581038 R 323850 CDS YP_001095972.1 127514775 4924014 complement(4581546..4581797) 1 NC_009092.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4581797 4924014 Shew_3850 Shewanella loihica PV-4 F0F1 ATP synthase subunit C YP_001095972.1 4581546 R 323850 CDS YP_001095973.1 127514776 4924015 complement(4581868..4582662) 1 NC_009092.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4582662 4924015 Shew_3851 Shewanella loihica PV-4 F0F1 ATP synthase subunit A YP_001095973.1 4581868 R 323850 CDS YP_001095974.1 127514777 4924016 complement(4582675..4583058) 1 NC_009092.1 PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I; ATP synthase I chain 4583058 4924016 Shew_3852 Shewanella loihica PV-4 ATP synthase I chain YP_001095974.1 4582675 R 323850 CDS YP_001095975.1 127514778 4924017 complement(4583284..4584162) 1 NC_009092.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: shm:Shewmr7_4025 ParB-like partition proteins; parB-like partition protein 4584162 4924017 Shew_3853 Shewanella loihica PV-4 parB-like partition protein YP_001095975.1 4583284 R 323850 CDS YP_001095976.1 127514779 4924018 complement(4584173..4584961) 1 NC_009092.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; cobyrinic acid a,c-diamide synthase 4584961 4924018 Shew_3854 Shewanella loihica PV-4 cobyrinic acid a,c-diamide synthase YP_001095976.1 4584173 R 323850 CDS YP_001095977.1 127514780 4924019 complement(4585058..4585762) 1 NC_009092.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4585762 gidB 4924019 gidB Shewanella loihica PV-4 16S rRNA methyltransferase GidB YP_001095977.1 4585058 R 323850 CDS YP_001095978.1 127514781 4924020 complement(4585784..4587673) 1 NC_009092.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4587673 4924020 Shew_3856 Shewanella loihica PV-4 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001095978.1 4585784 R 323850 CDS YP_001095979.1 127514782 4924021 complement(4588165..4588605) 1 NC_009092.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4588605 4924021 Shew_3857 Shewanella loihica PV-4 flavodoxin YP_001095979.1 4588165 R 323850 CDS YP_001095980.1 127514783 4924022 complement(4588736..4589518) 1 NC_009092.1 KEGG: mes:Meso_3002 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 4589518 4924022 Shew_3858 Shewanella loihica PV-4 ubiquinone biosynthesis O-methyltransferase YP_001095980.1 4588736 R 323850 CDS YP_001095981.1 127514784 4924023 4589730..4590698 1 NC_009092.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ppr:PBPRB1417 hypothetical inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 4590698 4924023 Shew_3859 Shewanella loihica PV-4 inosine/uridine-preferring nucleoside hydrolase YP_001095981.1 4589730 D 323850 CDS YP_001095982.1 127514785 4924024 complement(4590736..4591377) 1 NC_009092.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_3118 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 4591377 4924024 Shew_3860 Shewanella loihica PV-4 lysine exporter protein LysE/YggA YP_001095982.1 4590736 R 323850 CDS YP_001095983.1 127514786 4923985 4591588..4592277 1 NC_009092.1 KEGG: sfr:Sfri_3844 hypothetical protein; hypothetical protein 4592277 4923985 Shew_3861 Shewanella loihica PV-4 hypothetical protein YP_001095983.1 4591588 D 323850 CDS YP_001095984.1 127514787 4923986 4593900..4594484 1 NC_009092.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rha:RHA1_ro03159 resolvase; resolvase domain-containing protein 4594484 4923986 Shew_3862 Shewanella loihica PV-4 resolvase domain-containing protein YP_001095984.1 4593900 D 323850 CDS YP_001095985.1 127514788 4923987 4594563..4595552 1 NC_009092.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: atc:AGR_pTi_158 ATPase; ATPase central domain-containing protein 4595552 4923987 Shew_3863 Shewanella loihica PV-4 ATPase central domain-containing protein YP_001095985.1 4594563 D 323850 CDS YP_001095986.1 127514789 4923988 4595573..4598116 1 NC_009092.1 KEGG: rha:RHA1_ro11076 hypothetical protein; hypothetical protein 4598116 4923988 Shew_3864 Shewanella loihica PV-4 hypothetical protein YP_001095986.1 4595573 D 323850 CDS YP_001095987.1 127514790 4923989 complement(4598434..4599795) 1 NC_009092.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4599795 trmE 4923989 trmE Shewanella loihica PV-4 tRNA modification GTPase TrmE YP_001095987.1 4598434 R 323850 CDS YP_001095988.1 127514791 4923990 complement(4599900..4601528) 1 NC_009092.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: shm:Shewmr7_4032 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 4601528 4923990 Shew_3866 Shewanella loihica PV-4 60 kDa inner membrane insertion protein YP_001095988.1 4599900 R 323850 CDS YP_001095989.1 127514792 4923991 complement(4601532..4601786) 1 NC_009092.1 PFAM: protein of unknown function DUF37; KEGG: sdn:Sden_3776 protein of unknown function DUF37; hypothetical protein 4601786 4923991 Shew_3867 Shewanella loihica PV-4 hypothetical protein YP_001095989.1 4601532 R 323850 CDS YP_001095990.1 127514793 4923992 complement(4601753..4602115) 1 NC_009092.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4602115 rnpA 4923992 rnpA Shewanella loihica PV-4 ribonuclease P YP_001095990.1 4601753 R 323850 CDS YP_001095991.1 127514794 4923993 complement(4602125..4602262) 1 NC_009092.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4602262 rpmH 4923993 rpmH Shewanella loihica PV-4 50S ribosomal protein L34 YP_001095991.1 4602125 R 323850 CDS