-- dump date   	20140620_063924
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
323850000001	SEQ_END	SEQ_END	NC_009092.1	4602594	4602594	DR	NC_009092.1; contig end	4602594..4602594	Shewanella loihica PV-4	<NULL_VALUE>
YP_001092133.1	CDS	dnaA	NC_009092.1	111	1490	D	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein	111..1490	Shewanella loihica PV-4	4920637
YP_001092134.1	CDS	Shew_0002	NC_009092.1	1511	2611	D	KEGG: son:SO0009 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta	1511..2611	Shewanella loihica PV-4	4921953
YP_001092135.1	CDS	recF	NC_009092.1	2684	3766	D	Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F	2684..3766	Shewanella loihica PV-4	4923064
YP_001092136.1	CDS	Shew_0004	NC_009092.1	3783	6200	D	KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B	3783..6200	Shewanella loihica PV-4	4921660
YP_001092137.1	CDS	Shew_0005	NC_009092.1	6322	7041	D	hypothetical protein	6322..7041	Shewanella loihica PV-4	4923546
YP_001092138.1	CDS	Shew_0006	NC_009092.1	7075	7803	R	PFAM: LamB/YcsF family protein; KEGG: reu:Reut_A0089 LamB/YcsF; LamB/YcsF family protein	complement(7075..7803)	Shewanella loihica PV-4	4921837
YP_001092139.1	CDS	Shew_0007	NC_009092.1	7793	8725	R	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: eca:ECA1352 putative allophanate hydrolase subunit 2; urea amidolyase-like protein	complement(7793..8725)	Shewanella loihica PV-4	4922270
YP_001092140.1	CDS	Shew_0008	NC_009092.1	8722	9408	R	PFAM: Allophanate hydrolase subunit 1; KEGG: sfv:SFV_0624 putative carboxylase; allophanate hydrolase subunit 1	complement(8722..9408)	Shewanella loihica PV-4	4922900
YP_001092141.1	CDS	glyS	NC_009092.1	9507	11576	R	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta	complement(9507..11576)	Shewanella loihica PV-4	4923253
YP_001092142.1	CDS	glyQ	NC_009092.1	11589	12494	R	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha	complement(11589..12494)	Shewanella loihica PV-4	4923915
YP_001092143.1	CDS	Shew_0011	NC_009092.1	12604	13173	D	KEGG: shm:Shewmr7_0010 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I	12604..13173	Shewanella loihica PV-4	4923999
YP_001092144.1	CDS	Shew_0012	NC_009092.1	13179	13859	R	hypothetical protein	complement(13179..13859)	Shewanella loihica PV-4	4923184
YP_001092145.1	CDS	Shew_0013	NC_009092.1	14072	17275	R	PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: sfr:Sfri_0009 amidohydrolase; amidohydrolase	complement(14072..17275)	Shewanella loihica PV-4	4922171
YP_001092146.1	CDS	Shew_0014	NC_009092.1	17578	18018	R	KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein	complement(17578..18018)	Shewanella loihica PV-4	4923044
YP_001092147.1	CDS	Shew_0015	NC_009092.1	18184	18429	R	TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA	complement(18184..18429)	Shewanella loihica PV-4	4921266
YP_001092148.1	CDS	Shew_0016	NC_009092.1	18563	19027	R	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vfi:VF1792 regulatory protein; ybaK/ebsC protein	complement(18563..19027)	Shewanella loihica PV-4	4922955
YP_001092149.1	CDS	Shew_0017	NC_009092.1	19011	19499	R	PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5	complement(19011..19499)	Shewanella loihica PV-4	4921320
YP_001092150.1	CDS	fadA	NC_009092.1	19854	21017	R	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase	complement(19854..21017)	Shewanella loihica PV-4	4920559
YP_001092151.1	CDS	fadB	NC_009092.1	21039	23189	R	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha	complement(21039..23189)	Shewanella loihica PV-4	4920934
YP_001092152.1	CDS	Shew_0020	NC_009092.1	23495	24817	D	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase	23495..24817	Shewanella loihica PV-4	4920935
YP_001092153.1	CDS	Shew_0021	NC_009092.1	24832	25446	D	PFAM: protein of unknown function UPF0029; KEGG: she:Shewmr4_0020 protein of unknown function UPF0029; hypothetical protein	24832..25446	Shewanella loihica PV-4	4921130
YP_001092154.1	CDS	Shew_0022	NC_009092.1	25599	27056	D	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0019 potassium uptake protein, TrkH family; TrkH family potassium uptake protein	25599..27056	Shewanella loihica PV-4	4921721
YP_001092155.1	CDS	Shew_0023	NC_009092.1	27056	27583	D	KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase	27056..27583	Shewanella loihica PV-4	4922350
YP_001092156.1	CDS	Shew_0024	NC_009092.1	27605	27910	R	PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_0021 transcriptional regulator, ArsR family; ArsR family transcriptional regulator	complement(27605..27910)	Shewanella loihica PV-4	4922601
YP_001092157.1	CDS	Shew_0025	NC_009092.1	28183	28716	D	KEGG: sfr:Sfri_0019 protoporphyrinogen oxidase; protoporphyrinogen oxidase	28183..28716	Shewanella loihica PV-4	4923024
YP_001092158.1	CDS	Shew_0026	NC_009092.1	28832	29368	D	KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein	28832..29368	Shewanella loihica PV-4	4923295
YP_001092159.1	CDS	Shew_0027	NC_009092.1	29381	30028	R	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: son:SO4697 glutathione S-transferase; glutathione S-transferase domain-containing protein	complement(29381..30028)	Shewanella loihica PV-4	4923914
YP_001092160.1	CDS	Shew_0028	NC_009092.1	30110	31009	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pen:PSEEN2735 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(30110..31009)	Shewanella loihica PV-4	4920540
YP_001092161.1	CDS	Shew_0029	NC_009092.1	31239	31928	D	KEGG: shm:Shewmr7_3932 conserved hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase	31239..31928	Shewanella loihica PV-4	4920528
YP_001092162.1	CDS	Shew_0030	NC_009092.1	32076	32831	R	KEGG: sfr:Sfri_1989 hypothetical protein; hypothetical protein	complement(32076..32831)	Shewanella loihica PV-4	4920515
YP_001092163.1	CDS	Shew_0031	NC_009092.1	33256	34416	D	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3837 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	33256..34416	Shewanella loihica PV-4	4920504
YP_001092164.1	CDS	Shew_0032	NC_009092.1	34426	37575	D	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3929 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein	34426..37575	Shewanella loihica PV-4	4920496
YP_001092165.1	CDS	Shew_0033	NC_009092.1	37798	39639	D	PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase; peptidase M14, carboxypeptidase A	37798..39639	Shewanella loihica PV-4	4920489
YP_001092166.1	CDS	Shew_0034	NC_009092.1	39701	40504	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0139 methyltransferase type 11; type 12 methyltransferase	complement(39701..40504)	Shewanella loihica PV-4	4920480
YP_001092167.1	CDS	Shew_0035	NC_009092.1	40708	41478	D	KEGG: shm:Shewmr7_0138 lipoprotein, putative; putative lipoprotein	40708..41478	Shewanella loihica PV-4	4920469
YP_001092168.1	CDS	Shew_0036	NC_009092.1	41568	42389	R	PFAM: phosphoesterase, PA-phosphatase related; KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; PA-phosphatase-like phosphoesterase	complement(41568..42389)	Shewanella loihica PV-4	4920462
YP_001092169.1	CDS	Shew_0037	NC_009092.1	42482	43300	R	PFAM: phosphoesterase, PA-phosphatase related; KEGG: sde:Sde_1770 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like; PA-phosphatase-like phosphoesterase	complement(42482..43300)	Shewanella loihica PV-4	4920455
YP_001092170.1	CDS	Shew_0038	NC_009092.1	43463	43756	R	PFAM: Excinuclease ABC, C subunit domain protein; KEGG: she:Shewmr4_0137 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C	complement(43463..43756)	Shewanella loihica PV-4	4920447
YP_001092171.1	CDS	Shew_0039	NC_009092.1	43758	45818	R	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO0144 protease II; oligopeptidase B	complement(43758..45818)	Shewanella loihica PV-4	4920440
YP_001092172.1	CDS	ribB	NC_009092.1	46327	46980	D	DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase	46327..46980	Shewanella loihica PV-4	4920431
YP_001092173.1	CDS	Shew_0041	NC_009092.1	47293	50577	D	KEGG: she:Shewmr4_0134 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; Nitrate and nitrite sensing domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	47293..50577	Shewanella loihica PV-4	4920424
YP_001092174.1	CDS	Shew_0042	NC_009092.1	50756	51280	R	PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_0127 ferritin, Dps family protein; Ferritin, Dps family protein	complement(50756..51280)	Shewanella loihica PV-4	4920546
YP_001092175.1	CDS	Shew_0043	NC_009092.1	51408	51596	D	KEGG: cps:CPS_4517 hypothetical protein; hypothetical protein	51408..51596	Shewanella loihica PV-4	4920621
YP_001092176.1	CDS	Shew_0044	NC_009092.1	51810	54920	D	PFAM: acriflavin resistance protein; KEGG: sdn:Sden_3430 acriflavin resistance protein; acriflavin resistance protein	51810..54920	Shewanella loihica PV-4	4920904
YP_001092177.1	CDS	Shew_0045	NC_009092.1	54917	55987	D	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sdn:Sden_3429 secretion protein HlyD; RND family efflux transporter MFP subunit	54917..55987	Shewanella loihica PV-4	4921494
YP_001092178.1	CDS	Shew_0046	NC_009092.1	56169	57416	D	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein	56169..57416	Shewanella loihica PV-4	4924345
YP_001092179.1	CDS	Shew_0047	NC_009092.1	57427	58194	D	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB	57427..58194	Shewanella loihica PV-4	4922265
YP_001092180.1	CDS	Shew_0048	NC_009092.1	58313	59020	R	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdn:Sden_0827 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase	complement(58313..59020)	Shewanella loihica PV-4	4922898
YP_001092181.1	CDS	Shew_0049	NC_009092.1	59401	60972	D	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vpa:VP1905 transporter, BCCT family; choline/carnitine/betaine transporter	59401..60972	Shewanella loihica PV-4	4923371
YP_001092182.1	CDS	Shew_0050	NC_009092.1	61076	61795	R	3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon	complement(61076..61795)	Shewanella loihica PV-4	4923584
YP_001092183.1	CDS	Shew_0051	NC_009092.1	61803	63692	R	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: vpa:VP1902 CBS domain-containing protein; cyclic nucleotide-binding protein	complement(61803..63692)	Shewanella loihica PV-4	4924400
YP_001092184.1	CDS	Shew_0052	NC_009092.1	63788	64693	R	TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_3713 DNA binding domain, excisionase family; DNA binding domain-containing protein	complement(63788..64693)	Shewanella loihica PV-4	4922606
YP_001092185.1	CDS	Shew_0053	NC_009092.1	64717	65562	R	PFAM: formate dehydrogenase, subunit FdhD; KEGG: she:Shewmr4_3714 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD	complement(64717..65562)	Shewanella loihica PV-4	4923686
YP_001092186.1	CDS	Shew_0054	NC_009092.1	65858	66328	D	KEGG: sfr:Sfri_0052 hypothetical protein; hypothetical protein	65858..66328	Shewanella loihica PV-4	4921275
YP_001092187.1	CDS	Shew_0055	NC_009092.1	66328	66918	D	KEGG: son:SO4505 hypothetical protein; hypothetical protein	66328..66918	Shewanella loihica PV-4	4922332
YP_001092188.1	CDS	Shew_0056	NC_009092.1	67100	68776	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin	67100..68776	Shewanella loihica PV-4	4922656
YP_001092189.1	CDS	Shew_0057	NC_009092.1	68787	69452	D	PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative; cytoplasmic chaperone TorD family protein	68787..69452	Shewanella loihica PV-4	4923694
YP_001092190.1	CDS	Shew_0058	NC_009092.1	69620	69820	D	KEGG: she:Shewmr4_3719 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal	69620..69820	Shewanella loihica PV-4	4920428
YP_001092191.1	CDS	Shew_0059	NC_009092.1	69872	72721	D	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfr:Sfri_0057 twin-arginine translocation pathway signal; molybdopterin oxidoreductase	69872..72721	Shewanella loihica PV-4	4921053
YP_001092192.1	CDS	Shew_0060	NC_009092.1	72749	73339	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3792 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	72749..73339	Shewanella loihica PV-4	4921927
YP_001092193.1	CDS	Shew_0061	NC_009092.1	73390	74397	D	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma	73390..74397	Shewanella loihica PV-4	4923146
YP_001092194.1	CDS	Shew_0062	NC_009092.1	74889	75086	D	KEGG: son:SO4512 hypothetical protein; hypothetical protein	74889..75086	Shewanella loihica PV-4	4921429
YP_001092195.1	CDS	Shew_0063	NC_009092.1	75104	77959	D	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3795 twin-arginine translocation pathway signal; molybdopterin oxidoreductase	75104..77959	Shewanella loihica PV-4	4921577
YP_001092196.1	CDS	Shew_0064	NC_009092.1	77980	78549	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3725 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	77980..78549	Shewanella loihica PV-4	4922098
YP_001092197.1	CDS	Shew_0065	NC_009092.1	78618	79610	D	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_3797 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma	78618..79610	Shewanella loihica PV-4	4923003
YP_001092198.1	CDS	Shew_0066	NC_009092.1	79885	80250	D	hypothetical protein	79885..80250	Shewanella loihica PV-4	4922870
YP_001092199.1	CDS	Shew_0067	NC_009092.1	80252	80761	R	KEGG: sfr:Sfri_3099 methylation site containing protein; hypothetical protein	complement(80252..80761)	Shewanella loihica PV-4	4921457
YP_001092200.1	CDS	Shew_0068	NC_009092.1	80976	82355	D	PFAM: fumarate lyase; KEGG: pen:PSEEN1085 fumarate hydratase class II; fumarate lyase	80976..82355	Shewanella loihica PV-4	4921806
YP_001092201.1	CDS	Shew_0069	NC_009092.1	82400	83503	R	KEGG: sdn:Sden_0559 hypothetical protein; hypothetical protein	complement(82400..83503)	Shewanella loihica PV-4	4922715
YP_001092202.1	CDS	Shew_0070	NC_009092.1	83682	84845	R	PFAM: iron-containing alcohol dehydrogenase; KEGG: sfr:Sfri_0073 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase	complement(83682..84845)	Shewanella loihica PV-4	4923002
YP_001092203.1	CDS	Shew_0071	NC_009092.1	85050	85916	D	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: sfr:Sfri_0074 transcriptional regulator, AraC family protein; AraC family transcriptional regulator	85050..85916	Shewanella loihica PV-4	4923522
YP_001092204.1	CDS	Shew_0072	NC_009092.1	85924	86445	R	hypothetical protein	complement(85924..86445)	Shewanella loihica PV-4	4922370
YP_001092205.1	CDS	Shew_0073	NC_009092.1	86819	88162	D	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase	86819..88162	Shewanella loihica PV-4	4922099
YP_001092206.1	CDS	Shew_0075	NC_009092.1	88882	89097	R	hypothetical protein	complement(88882..89097)	Shewanella loihica PV-4	4923994
YP_001092207.1	CDS	Shew_0076	NC_009092.1	89390	89677	D	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nar:Saro_1420 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase	89390..89677	Shewanella loihica PV-4	4921408
YP_001092208.1	CDS	Shew_0077	NC_009092.1	89699	90652	D	PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0961 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	89699..90652	Shewanella loihica PV-4	4922417
YP_001092209.1	CDS	Shew_0078	NC_009092.1	90789	91649	D	PFAM: PfkB domain protein; KEGG: she:Shewmr4_0267 PfkB domain protein; ribokinase-like domain-containing protein	90789..91649	Shewanella loihica PV-4	4921640
YP_001092210.1	CDS	Shew_0079	NC_009092.1	91853	93310	R	PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: cps:CPS_0147 hydrolase, alpha/beta fold family; TAP domain-containing protein	complement(91853..93310)	Shewanella loihica PV-4	4923960
YP_001092211.1	CDS	Shew_0080	NC_009092.1	93574	94866	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VPA1277 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(93574..94866)	Shewanella loihica PV-4	4920530
YP_001092212.1	CDS	Shew_0081	NC_009092.1	94873	95607	R	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_04118 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator	complement(94873..95607)	Shewanella loihica PV-4	4920550
YP_001092213.1	CDS	Shew_0082	NC_009092.1	95660	96109	R	KEGG: sdn:Sden_0560 hypothetical protein; hypothetical protein	complement(95660..96109)	Shewanella loihica PV-4	4920417
YP_001092214.1	CDS	Shew_0083	NC_009092.1	96244	96936	D	PFAM: 3-alpha; MOSC domain containing protein; KEGG: she:Shewmr4_0269 MOSC domain containing protein; MOSC domain-containing protein	96244..96936	Shewanella loihica PV-4	4920442
YP_001092215.1	CDS	Shew_0084	NC_009092.1	97018	97338	D	KEGG: sfr:Sfri_0079 hypothetical protein; hypothetical protein	97018..97338	Shewanella loihica PV-4	4920499
YP_001092216.1	CDS	Shew_0085	NC_009092.1	97414	99330	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3750 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(97414..99330)	Shewanella loihica PV-4	4920484
YP_001092217.1	CDS	Shew_0086	NC_009092.1	99591	101240	R	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron-transferring-flavoprotein dehydrogenase	complement(99591..101240)	Shewanella loihica PV-4	4920526
YP_001092218.1	CDS	moaA	NC_009092.1	101556	102569	D	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A	101556..102569	Shewanella loihica PV-4	4920648
YP_001092219.1	CDS	Shew_0088	NC_009092.1	102681	103211	D	TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pat:Patl_2158 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B	102681..103211	Shewanella loihica PV-4	4923538
YP_001092220.1	CDS	moaC	NC_009092.1	103204	103680	D	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC	103204..103680	Shewanella loihica PV-4	4923334
YP_001092221.1	CDS	Shew_0090	NC_009092.1	103730	103981	D	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: shm:Shewmr7_3746 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1	103730..103981	Shewanella loihica PV-4	4923760
YP_001092222.1	CDS	Shew_0091	NC_009092.1	103983	104450	D	PFAM: molybdopterin biosynthesis MoaE; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE	103983..104450	Shewanella loihica PV-4	4923236
YP_001092223.1	CDS	Shew_0092	NC_009092.1	104484	105308	D	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: shm:Shewmr7_3744 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein	104484..105308	Shewanella loihica PV-4	4923009
YP_001092224.1	CDS	Shew_0093	NC_009092.1	105308	105988	D	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3743 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit	105308..105988	Shewanella loihica PV-4	4922613
YP_001092225.1	CDS	Shew_0094	NC_009092.1	105969	107078	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3742 ABC transporter-related protein; ABC transporter-like protein	105969..107078	Shewanella loihica PV-4	4922116
YP_001092226.1	CDS	Shew_0095	NC_009092.1	107182	107541	D	PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; conserved hypothetical protein 156; KEGG: vpa:VPA0694 hypothetical protein; hypothetical protein	107182..107541	Shewanella loihica PV-4	4921132
YP_001092227.1	CDS	Shew_0096	NC_009092.1	107692	108228	D	KEGG: shm:Shewmr7_3741 hypothetical protein; hypothetical protein	107692..108228	Shewanella loihica PV-4	4921540
YP_001092228.1	CDS	Shew_0097	NC_009092.1	108232	108909	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3740 two component transcriptional regulator, winged helix family; two component transcriptional regulator	108232..108909	Shewanella loihica PV-4	4921957
YP_001092229.1	CDS	Shew_0098	NC_009092.1	108959	110218	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase	108959..110218	Shewanella loihica PV-4	4923470
YP_001092230.1	CDS	Shew_0099	NC_009092.1	110231	110905	D	TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: she:Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein	110231..110905	Shewanella loihica PV-4	4923300
YP_001092231.1	CDS	Shew_0100	NC_009092.1	110927	111094	D	PFAM: protein of unknown function UPF0057; KEGG: shm:Shewmr7_3736 protein of unknown function UPF0057; hypothetical protein	110927..111094	Shewanella loihica PV-4	4920553
YP_001092232.1	CDS	Shew_0101	NC_009092.1	111320	111721	D	PFAM: Endoribonuclease L-PSP; KEGG: bha:BH3085 hypothetical protein; endoribonuclease L-PSP	111320..111721	Shewanella loihica PV-4	4920820
YP_001092233.1	CDS	Shew_0102	NC_009092.1	111823	111978	D	KEGG: shm:Shewmr7_3732 hypothetical protein; hypothetical protein	111823..111978	Shewanella loihica PV-4	4923001
YP_001092234.1	CDS	Shew_0103	NC_009092.1	112185	113408	D	PFAM: sodium/glutamate symporter; KEGG: she:Shewmr4_1482 sodium/glutamate symporter; sodium/glutamate symporter	112185..113408	Shewanella loihica PV-4	4923083
YP_001092235.1	CDS	Shew_0104	NC_009092.1	113461	113712	R	PFAM: protein of unknown function DUF333; KEGG: shm:Shewmr7_0123 protein of unknown function DUF333; hypothetical protein	complement(113461..113712)	Shewanella loihica PV-4	4923682
YP_001092236.1	CDS	Shew_0105	NC_009092.1	113788	116325	R	SMART: peptidase M14, carboxypeptidase A; KEGG: pat:Patl_4232 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A	complement(113788..116325)	Shewanella loihica PV-4	4920542
YP_001092237.1	CDS	Shew_0106	NC_009092.1	116533	117111	D	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein	116533..117111	Shewanella loihica PV-4	4920517
YP_001092238.1	CDS	Shew_0107	NC_009092.1	117145	118491	R	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein	complement(117145..118491)	Shewanella loihica PV-4	4920449
YP_001092239.1	CDS	Shew_0108	NC_009092.1	118514	119560	D	PFAM: polysaccharide deacetylase; KEGG: shm:Shewmr7_3874 polysaccharide deacetylase; polysaccharide deacetylase	118514..119560	Shewanella loihica PV-4	4921203
YP_001092240.1	CDS	Shew_0109	NC_009092.1	119619	120665	R	PFAM: CheB methylesterase; response regulator receiver; KEGG: xcb:XC_2323 glutamate methylesterase; response regulator receiver modulated CheB methylesterase	complement(119619..120665)	Shewanella loihica PV-4	4923008
YP_001092241.1	CDS	Shew_0110	NC_009092.1	120694	121560	R	PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: sde:Sde_3104 biotin biosynthesis protein BioC; chemotaxis protein CheR	complement(120694..121560)	Shewanella loihica PV-4	4920538
YP_001092242.1	CDS	Shew_0111	NC_009092.1	121633	124227	R	PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: cvi:CV3438 probable methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor	complement(121633..124227)	Shewanella loihica PV-4	4920842
YP_001092243.1	CDS	Shew_0112	NC_009092.1	124250	124807	R	PFAM: CheW domain protein; KEGG: sde:Sde_3106 biotin synthase; CheW protein	complement(124250..124807)	Shewanella loihica PV-4	4921684
YP_001092244.1	CDS	Shew_0113	NC_009092.1	124836	126896	R	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: tcx:Tcr_1612 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase	complement(124836..126896)	Shewanella loihica PV-4	4921465
YP_001092245.1	CDS	Shew_0114	NC_009092.1	126918	127280	R	PFAM: response regulator receiver; KEGG: hch:HCH_00454 FOG: CheY-like receiver; response regulator receiver protein	complement(126918..127280)	Shewanella loihica PV-4	4922592
YP_001092246.1	CDS	Shew_0115	NC_009092.1	127277	127576	R	hypothetical protein	complement(127277..127576)	Shewanella loihica PV-4	4923254
YP_001092247.1	CDS	Shew_0116	NC_009092.1	127740	128375	R	PFAM: electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC	complement(127740..128375)	Shewanella loihica PV-4	4923528
YP_001092248.1	CDS	Shew_0117	NC_009092.1	128380	129282	R	converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase	complement(128380..129282)	Shewanella loihica PV-4	4923484
YP_001092249.1	CDS	Shew_0118	NC_009092.1	129295	130278	R	PFAM: cytochrome oxidase assembly; KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly	complement(129295..130278)	Shewanella loihica PV-4	4923531
YP_001092250.1	CDS	Shew_0119	NC_009092.1	130278	130829	R	KEGG: sfr:Sfri_0252 hypothetical protein; hypothetical protein	complement(130278..130829)	Shewanella loihica PV-4	4923998
YP_001092251.1	CDS	Shew_0120	NC_009092.1	131002	131757	R	KEGG: shm:Shewmr7_3869 hypothetical protein; hypothetical protein	complement(131002..131757)	Shewanella loihica PV-4	4924027
YP_001092252.1	CDS	Shew_0121	NC_009092.1	131798	131974	D	KEGG: sfr:Sfri_0254 hypothetical protein; hypothetical protein	131798..131974	Shewanella loihica PV-4	4920544
YP_001092253.1	CDS	Shew_0122	NC_009092.1	131990	132865	R	PFAM: cytochrome c oxidase, subunit III; KEGG: shm:Shewmr7_3867 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III	complement(131990..132865)	Shewanella loihica PV-4	4920522
YP_001092254.1	CDS	Shew_0123	NC_009092.1	132862	133431	R	involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein	complement(132862..133431)	Shewanella loihica PV-4	4920460
YP_001092255.1	CDS	Shew_0124	NC_009092.1	133433	135043	R	PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3865 cytochrome-c oxidase; cytochrome-c oxidase	complement(133433..135043)	Shewanella loihica PV-4	4920478
YP_001092256.1	CDS	Shew_0125	NC_009092.1	135053	136618	R	PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: shm:Shewmr7_3864 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II	complement(135053..136618)	Shewanella loihica PV-4	4921195
YP_001092257.1	CDS	Shew_0126	NC_009092.1	137017	137526	R	KEGG: sfr:Sfri_0259 hypothetical protein; hypothetical protein	complement(137017..137526)	Shewanella loihica PV-4	4920434
YP_001092258.1	CDS	Shew_0127	NC_009092.1	137523	138140	R	Represses a number of genes involved in the response to DNA damage; LexA repressor	complement(137523..138140)	Shewanella loihica PV-4	4920491
YP_001092259.1	CDS	Shew_0128	NC_009092.1	138259	138933	R	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0162 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase	complement(138259..138933)	Shewanella loihica PV-4	4923587
YP_001092260.1	CDS	nudE	NC_009092.1	139031	139576	D	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE	139031..139576	Shewanella loihica PV-4	4920426
YP_001092261.1	CDS	Shew_0130	NC_009092.1	139630	140442	D	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sfr:Sfri_0118 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase	139630..140442	Shewanella loihica PV-4	4922781
YP_001092262.1	CDS	Shew_0131	NC_009092.1	140435	140890	D	PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0171 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	140435..140890	Shewanella loihica PV-4	4922980
YP_001092263.1	CDS	Shew_0132	NC_009092.1	140998	141654	D	KEGG: she:Shewmr4_0172 transcriptional regulator, TetR family; TetR family transcriptional regulator	140998..141654	Shewanella loihica PV-4	4920464
YP_001092264.1	CDS	Shew_0133	NC_009092.1	141645	143507	D	PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase	141645..143507	Shewanella loihica PV-4	4922055
YP_001092265.1	CDS	Shew_0134	NC_009092.1	143555	144673	R	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase	complement(143555..144673)	Shewanella loihica PV-4	4920508
YP_001092266.1	CDS	Shew_0135	NC_009092.1	144673	145716	R	catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase	complement(144673..145716)	Shewanella loihica PV-4	4922151
YP_001092267.1	CDS	Shew_0136	NC_009092.1	145879	146985	R	PFAM: fatty acid desaturase; KEGG: she:Shewmr4_0176 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase	complement(145879..146985)	Shewanella loihica PV-4	4920534
YP_001092268.1	CDS	Shew_0137	NC_009092.1	147125	147742	D	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR	147125..147742	Shewanella loihica PV-4	4923966
YP_001092269.1	CDS	Shew_0138	NC_009092.1	147823	148920	R	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase	complement(147823..148920)	Shewanella loihica PV-4	4920446
YP_001092270.1	CDS	Shew_0139	NC_009092.1	149128	149928	D	converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase	149128..149928	Shewanella loihica PV-4	4922355
YP_001092271.1	CDS	Shew_0140	NC_009092.1	149997	150455	R	PFAM: RNP-1 like RNA-binding protein; KEGG: shm:Shewmr7_0175 RNP-1 like RNA-binding protein; RNP-1-like RNA-binding protein	complement(149997..150455)	Shewanella loihica PV-4	4923780
YP_001092272.1	CDS	murB	NC_009092.1	157198	158238	D	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase	157198..158238	Shewanella loihica PV-4	4923978
YP_001092273.1	CDS	Shew_0142	NC_009092.1	158231	159190	D	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase	158231..159190	Shewanella loihica PV-4	4921480
YP_001092274.1	CDS	Shew_0143	NC_009092.1	159254	160204	R	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase	complement(159254..160204)	Shewanella loihica PV-4	4920421
YP_001092275.1	CDS	Shew_0144	NC_009092.1	160907	162091	D	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu	160907..162091	Shewanella loihica PV-4	4923981
YP_001092276.1	CDS	secE	NC_009092.1	162374	162745	D	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE	162374..162745	Shewanella loihica PV-4	4921431
YP_001092277.1	CDS	Shew_0146	NC_009092.1	162755	163297	D	KEGG: sfr:Sfri_0136 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor	162755..163297	Shewanella loihica PV-4	4921700
YP_001092278.1	CDS	rplK	NC_009092.1	163424	163852	D	binds directly to 23S ribosomal RNA; 50S ribosomal protein L11	163424..163852	Shewanella loihica PV-4	4922205
YP_001092279.1	CDS	Shew_0148	NC_009092.1	163857	164558	D	PFAM: ribosomal protein L1; KEGG: shm:Shewmr7_0184 ribosomal protein L1; 50S ribosomal protein L1	163857..164558	Shewanella loihica PV-4	4922431
YP_001092280.1	CDS	rplJ	NC_009092.1	164826	165323	D	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10	164826..165323	Shewanella loihica PV-4	4922639
YP_001092281.1	CDS	Shew_0150	NC_009092.1	165377	165745	D	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12-like; KEGG: she:Shewmr4_0191 ribosomal protein L7/L12; 50S ribosomal protein L7/L12	165377..165745	Shewanella loihica PV-4	4922904
YP_001092282.1	CDS	rpoB	NC_009092.1	165984	170015	D	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta	165984..170015	Shewanella loihica PV-4	4923303
YP_001092283.1	CDS	Shew_0152	NC_009092.1	170098	174312	D	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta'	170098..174312	Shewanella loihica PV-4	4923304
YP_001092284.1	CDS	rpsL	NC_009092.1	174503	174877	D	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12	174503..174877	Shewanella loihica PV-4	4923607
YP_001092285.1	CDS	Shew_0154	NC_009092.1	174958	175428	D	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7	174958..175428	Shewanella loihica PV-4	4923754
YP_001092286.1	CDS	Shew_0155	NC_009092.1	175504	177600	D	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G	175504..177600	Shewanella loihica PV-4	4924225
YP_001092287.1	CDS	Shew_0156	NC_009092.1	177680	178864	D	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu	177680..178864	Shewanella loihica PV-4	4920567
YP_001092288.1	CDS	rpsJ	NC_009092.1	179226	179537	D	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10	179226..179537	Shewanella loihica PV-4	4920610
YP_001092289.1	CDS	rplC	NC_009092.1	179565	180203	D	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3	179565..180203	Shewanella loihica PV-4	4920628
YP_001092290.1	CDS	rplD	NC_009092.1	180220	180825	D	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4	180220..180825	Shewanella loihica PV-4	4920649
YP_001092291.1	CDS	rplW	NC_009092.1	180822	181121	D	binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23	180822..181121	Shewanella loihica PV-4	4920650
YP_001092292.1	CDS	rplB	NC_009092.1	181138	181965	D	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2	181138..181965	Shewanella loihica PV-4	4920665
YP_001092293.1	CDS	rpsS	NC_009092.1	181977	182255	D	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19	181977..182255	Shewanella loihica PV-4	4920673
YP_001092294.1	CDS	rplV	NC_009092.1	182271	182603	D	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22	182271..182603	Shewanella loihica PV-4	4920704
YP_001092295.1	CDS	rpsC	NC_009092.1	182613	183302	D	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3	182613..183302	Shewanella loihica PV-4	4920763
YP_001092296.1	CDS	rplP	NC_009092.1	183314	183724	D	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16	183314..183724	Shewanella loihica PV-4	4920780
YP_001092297.1	CDS	Shew_0166	NC_009092.1	183724	183915	D	one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29	183724..183915	Shewanella loihica PV-4	4920841
YP_001092298.1	CDS	rpsQ	NC_009092.1	183915	184163	D	primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17	183915..184163	Shewanella loihica PV-4	4920870
YP_001092299.1	CDS	rplN	NC_009092.1	184343	184711	D	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14	184343..184711	Shewanella loihica PV-4	4920871
YP_001092300.1	CDS	rplX	NC_009092.1	184723	185037	D	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24	184723..185037	Shewanella loihica PV-4	4920874
YP_001092301.1	CDS	rplE	NC_009092.1	185050	185589	D	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5	185050..185589	Shewanella loihica PV-4	4920877
YP_001092302.1	CDS	rpsN	NC_009092.1	185600	185905	D	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14	185600..185905	Shewanella loihica PV-4	4920879
YP_001092303.1	CDS	rpsH	NC_009092.1	185929	186321	D	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8	185929..186321	Shewanella loihica PV-4	4920840
YP_001092304.1	CDS	rplF	NC_009092.1	186332	186862	D	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6	186332..186862	Shewanella loihica PV-4	4920905
YP_001092305.1	CDS	rplR	NC_009092.1	186873	187223	D	binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18	186873..187223	Shewanella loihica PV-4	4920907
YP_001092306.1	CDS	rpsE	NC_009092.1	187237	187740	D	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5	187237..187740	Shewanella loihica PV-4	4920932
YP_001092307.1	CDS	Shew_0176	NC_009092.1	187746	187928	D	PFAM: ribosomal protein L30; KEGG: she:Shewmr4_0217 ribosomal protein L30; 50S ribosomal protein L30	187746..187928	Shewanella loihica PV-4	4920933
YP_001092308.1	CDS	rplO	NC_009092.1	187932	188366	D	late assembly protein; 50S ribosomal protein L15	187932..188366	Shewanella loihica PV-4	4920937
YP_001092309.1	CDS	secY	NC_009092.1	188374	189714	D	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY	188374..189714	Shewanella loihica PV-4	4920939
YP_001092310.1	CDS	rpmJ	NC_009092.1	189736	189849	D	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36	189736..189849	Shewanella loihica PV-4	4920996
YP_001092311.1	CDS	rpsM	NC_009092.1	189967	190323	D	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13	189967..190323	Shewanella loihica PV-4	4921086
YP_001092312.1	CDS	Shew_0181	NC_009092.1	190341	190733	D	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11	190341..190733	Shewanella loihica PV-4	4921089
YP_001092313.1	CDS	rpsD	NC_009092.1	190770	191390	D	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4	190770..191390	Shewanella loihica PV-4	4921129
YP_001092314.1	CDS	Shew_0183	NC_009092.1	191415	192404	D	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha	191415..192404	Shewanella loihica PV-4	4921035
YP_001092315.1	CDS	rplQ	NC_009092.1	192444	192836	D	is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17	192444..192836	Shewanella loihica PV-4	4921036
YP_001092316.1	CDS	Shew_0185	NC_009092.1	192893	193870	R	KEGG: she:Shewmr4_0226 hypothetical protein; hypothetical protein	complement(192893..193870)	Shewanella loihica PV-4	4921322
YP_001092317.1	CDS	Shew_0186	NC_009092.1	194005	194490	R	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE	complement(194005..194490)	Shewanella loihica PV-4	4921309
YP_001092318.1	CDS	Shew_0187	NC_009092.1	194487	194687	R	PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD; Heme exporter protein CcmD	complement(194487..194687)	Shewanella loihica PV-4	4921045
YP_001092319.1	CDS	Shew_0188	NC_009092.1	194687	195433	R	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: sfr:Sfri_0177 heme exporter protein CcmC; heme exporter protein CcmC	complement(194687..195433)	Shewanella loihica PV-4	4921839
YP_001092320.1	CDS	Shew_0189	NC_009092.1	195435	196121	R	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB	complement(195435..196121)	Shewanella loihica PV-4	4922029
YP_001092321.1	CDS	Shew_0190	NC_009092.1	196133	196783	R	ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA	complement(196133..196783)	Shewanella loihica PV-4	4922121
YP_001092322.1	CDS	Shew_0191	NC_009092.1	197116	197409	D	PFAM: cytochrome c, class I; KEGG: sfr:Sfri_0180 cytochrome c, class I; cytochrome c, class I	197116..197409	Shewanella loihica PV-4	4922152
YP_001092323.1	CDS	Shew_0192	NC_009092.1	197601	198851	R	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0228 TPR repeat-containing protein; hypothetical protein	complement(197601..198851)	Shewanella loihica PV-4	4922153
YP_001092324.1	CDS	Shew_0193	NC_009092.1	199263	201239	D	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF	199263..201239	Shewanella loihica PV-4	4922233
YP_001092325.1	CDS	Shew_0194	NC_009092.1	201257	201814	D	TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0230 periplasmic protein thiol--disulphide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE	201257..201814	Shewanella loihica PV-4	4922351
YP_001092326.1	CDS	Shew_0195	NC_009092.1	201814	202293	D	PFAM: cytochrome C biogenesis protein; KEGG: shm:Shewmr7_0231 cytochrome c biogenesis protein; cytochrome C biogenesis protein	201814..202293	Shewanella loihica PV-4	4922428
YP_001092327.1	CDS	Shew_0196	NC_009092.1	202290	202877	D	PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0232 redoxin domain protein; redoxin domain-containing protein	202290..202877	Shewanella loihica PV-4	4922518
YP_001092328.1	CDS	Shew_0197	NC_009092.1	208521	209021	R	PFAM: protein of unknown function DUF796; KEGG: pae:PA0085 hypothetical protein; hypothetical protein	complement(208521..209021)	Shewanella loihica PV-4	4923936
YP_001092329.1	CDS	Shew_0198	NC_009092.1	209239	210513	D	TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: shm:Shewmr7_0233 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA	209239..210513	Shewanella loihica PV-4	4922604
YP_001092330.1	CDS	Shew_0199	NC_009092.1	210571	211110	R	PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein; hypothetical protein	complement(210571..211110)	Shewanella loihica PV-4	4922458
YP_001092331.1	CDS	Shew_0200	NC_009092.1	211110	213746	R	catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase	complement(211110..213746)	Shewanella loihica PV-4	4922459
YP_001092332.1	CDS	Shew_0201	NC_009092.1	213864	215024	R	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase	complement(213864..215024)	Shewanella loihica PV-4	4922891
YP_001092333.1	CDS	argC	NC_009092.1	215298	216278	D	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase	215298..216278	Shewanella loihica PV-4	4922657
YP_001092334.1	CDS	Shew_0203	NC_009092.1	216307	217092	D	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase	216307..217092	Shewanella loihica PV-4	4922886
YP_001092335.1	CDS	Shew_0204	NC_009092.1	217135	218040	D	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase	217135..218040	Shewanella loihica PV-4	4923062
YP_001092336.1	CDS	Shew_0205	NC_009092.1	218094	219317	D	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase	218094..219317	Shewanella loihica PV-4	4923212
YP_001092337.1	CDS	Shew_0206	NC_009092.1	219411	220772	D	catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase	219411..220772	Shewanella loihica PV-4	4923374
YP_001092338.1	CDS	Shew_0207	NC_009092.1	220944	223529	R	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: sfr:Sfri_0369 penicillin-binding protein, 1A family protein; 1A family penicillin-binding protein	complement(220944..223529)	Shewanella loihica PV-4	4923420
YP_001092339.1	CDS	Shew_0208	NC_009092.1	223714	224793	D	TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM	223714..224793	Shewanella loihica PV-4	4923421
YP_001092340.1	CDS	Shew_0209	NC_009092.1	224781	225362	D	PFAM: Fimbrial assembly family protein; KEGG: shm:Shewmr7_0243 fimbrial assembly family protein; fimbrial assembly family protein	224781..225362	Shewanella loihica PV-4	4923645
YP_001092341.1	CDS	Shew_0210	NC_009092.1	225359	225982	D	PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO; pilus assembly protein, PilO	225359..225982	Shewanella loihica PV-4	4923537
YP_001092342.1	CDS	Shew_0211	NC_009092.1	225979	226494	D	PFAM: Pilus assembly protein, PilQ; KEGG: shm:Shewmr7_0245 pilus assembly protein, PilQ; pilus assembly protein, PilQ	225979..226494	Shewanella loihica PV-4	4923395
YP_001092343.1	CDS	Shew_0212	NC_009092.1	226517	228568	D	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3699 type IV pilus secretin PilQ; type IV pilus secretin PilQ	226517..228568	Shewanella loihica PV-4	4923582
YP_001092344.1	CDS	aroK	NC_009092.1	228784	229299	D	type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I	228784..229299	Shewanella loihica PV-4	4923605
YP_001092345.1	CDS	aroB	NC_009092.1	229315	230391	D	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase	229315..230391	Shewanella loihica PV-4	4923755
YP_001092346.1	CDS	Shew_0215	NC_009092.1	230408	231943	D	PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein	230408..231943	Shewanella loihica PV-4	4923669
YP_001092347.1	CDS	Shew_0216	NC_009092.1	231996	232835	D	KEGG: sdn:Sden_0264 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase	231996..232835	Shewanella loihica PV-4	4923670
YP_001092348.1	CDS	Shew_0217	NC_009092.1	232910	233083	R	KEGG: sfr:Sfri_0379 hypothetical protein; hypothetical protein	complement(232910..233083)	Shewanella loihica PV-4	4923683
YP_001092349.1	CDS	Shew_0218	NC_009092.1	233092	233436	R	KEGG: shm:Shewmr7_0252 hypothetical protein; hypothetical protein	complement(233092..233436)	Shewanella loihica PV-4	4923728
YP_001092350.1	CDS	Shew_0219	NC_009092.1	233648	234322	D	PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase	233648..234322	Shewanella loihica PV-4	4923751
YP_001092351.1	CDS	Shew_0220	NC_009092.1	234325	235020	D	KEGG: son:SO0293 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase	234325..235020	Shewanella loihica PV-4	4923840
YP_001092352.1	CDS	Shew_0221	NC_009092.1	235026	236024	D	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase	235026..236024	Shewanella loihica PV-4	4923845
YP_001092353.1	CDS	Shew_0222	NC_009092.1	236089	236964	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(236089..236964)	Shewanella loihica PV-4	4923879
YP_001092354.1	CDS	Shew_0223	NC_009092.1	237090	237959	D	PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_3688 protein of unknown function DUF6, transmembrane; hypothetical protein	237090..237959	Shewanella loihica PV-4	4923901
YP_001092355.1	CDS	Shew_0224	NC_009092.1	237981	238550	R	PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_0258 transport-associated; transport-associated	complement(237981..238550)	Shewanella loihica PV-4	4923902
YP_001092356.1	CDS	Shew_0225	NC_009092.1	238547	239140	R	TIGRFAM: phosphoheptose isomerase; KEGG: shm:Shewmr7_0259 phosphoheptose isomerase; phosphoheptose isomerase	complement(238547..239140)	Shewanella loihica PV-4	4923913
YP_001092357.1	CDS	Shew_0226	NC_009092.1	239209	239553	R	PFAM: protein of unknown function UPF0102; KEGG: she:Shewmr4_3685 protein of unknown function UPF0102; hypothetical protein	complement(239209..239553)	Shewanella loihica PV-4	4923961
YP_001092358.1	CDS	Shew_0227	NC_009092.1	239550	241454	R	PFAM: LppC family lipoprotein; KEGG: shm:Shewmr7_0261 LppC family lipoprotein; LppC family lipoprotein	complement(239550..241454)	Shewanella loihica PV-4	4923967
YP_001092359.1	CDS	Shew_0228	NC_009092.1	241543	242385	D	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0262 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase	241543..242385	Shewanella loihica PV-4	4924073
YP_001092360.1	CDS	Shew_0229	NC_009092.1	242897	243706	R	SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_06608 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; extracellular solute-binding protein	complement(242897..243706)	Shewanella loihica PV-4	4923937
YP_001092361.1	CDS	Shew_0230	NC_009092.1	243776	245485	R	KEGG: sfr:Sfri_0393 hypothetical protein; hypothetical protein	complement(243776..245485)	Shewanella loihica PV-4	4924112
YP_001092362.1	CDS	Shew_0231	NC_009092.1	245669	246940	R	PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein	complement(245669..246940)	Shewanella loihica PV-4	4924223
YP_001092363.1	CDS	Shew_0232	NC_009092.1	247133	247528	D	KEGG: shm:Shewmr7_0274 hypothetical protein; hypothetical protein	247133..247528	Shewanella loihica PV-4	4924224
YP_001092364.1	CDS	Shew_0233	NC_009092.1	247659	250001	D	PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: she:Shewmr4_3670 radical SAM N-terminal domain protein; hypothetical protein	247659..250001	Shewanella loihica PV-4	4921085
YP_001092365.1	CDS	Shew_0234	NC_009092.1	250076	250435	D	PFAM: protein of unknown function DUF1232; KEGG: she:Shewmr4_3655 protein of unknown function DUF1232; hypothetical protein	250076..250435	Shewanella loihica PV-4	4921356
YP_001092366.1	CDS	Shew_0235	NC_009092.1	250449	251399	R	PFAM: isochorismatase hydrolase; KEGG: cps:CPS_0771 isochorismatase family protein; isochorismatase hydrolase	complement(250449..251399)	Shewanella loihica PV-4	4921411
YP_001092367.1	CDS	Shew_0236	NC_009092.1	251517	252434	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0770 transcriptional regulator, LysR family; LysR family transcriptional regulator	251517..252434	Shewanella loihica PV-4	4921803
YP_001092368.1	CDS	Shew_0237	NC_009092.1	252445	254343	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_3839 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer	complement(252445..254343)	Shewanella loihica PV-4	4921909
YP_001092369.1	CDS	Shew_0238	NC_009092.1	254419	255507	R	PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3663 porin, gram-negative type; porin	complement(254419..255507)	Shewanella loihica PV-4	4921908
YP_001092370.1	CDS	Shew_0239	NC_009092.1	255646	256626	R	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_0283 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma	complement(255646..256626)	Shewanella loihica PV-4	4921911
YP_001092371.1	CDS	Shew_0240	NC_009092.1	256691	257305	R	PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_0284 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein	complement(256691..257305)	Shewanella loihica PV-4	4921912
YP_001092372.1	CDS	Shew_0241	NC_009092.1	257305	257850	R	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0285 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	complement(257305..257850)	Shewanella loihica PV-4	4922425
YP_001092373.1	CDS	Shew_0242	NC_009092.1	257861	260074	R	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: shm:Shewmr7_0286 twin-arginine translocation pathway signal; molydopterin dinucleotide-binding region	complement(257861..260074)	Shewanella loihica PV-4	4922438
YP_001092374.1	CDS	Shew_0243	NC_009092.1	260264	261229	R	PFAM: regulatory protein, LysR; KEGG: she:Shewmr4_3657 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(260264..261229)	Shewanella loihica PV-4	4922439
YP_001092375.1	CDS	Shew_0244	NC_009092.1	261778	262473	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vvy:VV2222 tetrathionate reductase, subunit B; 4Fe-4S ferredoxin	261778..262473	Shewanella loihica PV-4	4922528
YP_001092376.1	CDS	Shew_0245	NC_009092.1	262483	265521	D	PFAM: molydopterin dinucleotide-binding region; KEGG: ppr:PBPRB1372 hypothetical tetrathionate reductase; molydopterin dinucleotide-binding region	262483..265521	Shewanella loihica PV-4	4922896
YP_001092377.1	CDS	Shew_0246	NC_009092.1	265675	266292	D	KEGG: shm:Shewmr7_0292 hypothetical protein; hypothetical protein	265675..266292	Shewanella loihica PV-4	4923007
YP_001092378.1	CDS	Shew_0247	NC_009092.1	266599	266994	D	KEGG: pae:PA1038 hypothetical protein; hypothetical protein	266599..266994	Shewanella loihica PV-4	4923136
YP_001092379.1	CDS	Shew_0248	NC_009092.1	267039	267596	D	PFAM: GCN5-related N-acetyltransferase; KEGG: psp:PSPPH_3302 ribosomal protein alanine acetyltransferase; N-acetyltransferase GCN5	267039..267596	Shewanella loihica PV-4	4923137
YP_001092380.1	CDS	Shew_0249	NC_009092.1	268052	268594	R	PFAM: GCN5-related N-acetyltransferase; KEGG: vvy:VV0134 predicted acetyltransferase; N-acetyltransferase GCN5	complement(268052..268594)	Shewanella loihica PV-4	4923213
YP_001092381.1	CDS	Shew_0250	NC_009092.1	268605	269783	R	PFAM: regulatory protein, MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: vvy:VV0135 putative transcriptional regulator; MerR family transcriptional regulator	complement(268605..269783)	Shewanella loihica PV-4	4923235
YP_001092382.1	CDS	Shew_0251	NC_009092.1	270161	270757	D	PFAM: phage integrase family protein; KEGG: vvu:VV20655 integrase; phage integrase family protein	270161..270757	Shewanella loihica PV-4	4923394
YP_001092383.1	CDS	Shew_0252	NC_009092.1	270902	271894	R	KEGG: vvy:VV0136 hypothetical protein; hypothetical protein	complement(270902..271894)	Shewanella loihica PV-4	4923533
YP_001092384.1	CDS	Shew_0253	NC_009092.1	271884	272990	R	PFAM: secretion protein HlyD family protein; KEGG: vvy:VV0137 multidrug resistance efflux pump; secretion protein HlyD family protein	complement(271884..272990)	Shewanella loihica PV-4	4923667
YP_001092385.1	CDS	Shew_0254	NC_009092.1	273010	273519	R	KEGG: vvy:VV0138 hypothetical protein; hypothetical protein	complement(273010..273519)	Shewanella loihica PV-4	4923781
YP_001092386.1	CDS	Shew_0255	NC_009092.1	273651	274331	D	PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: vvy:VV0139 hypothetical protein; ion transport 2 domain-containing protein	273651..274331	Shewanella loihica PV-4	4923827
YP_001092387.1	CDS	Shew_0256	NC_009092.1	274860	275438	R	KEGG: son:SO0322 hypothetical protein; hypothetical protein	complement(274860..275438)	Shewanella loihica PV-4	4923828
YP_001092388.1	CDS	Shew_0257	NC_009092.1	275574	277652	R	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: sdn:Sden_0280 peptidase S9, prolyl oligopeptidase active site region; peptidase S9 prolyl oligopeptidase	complement(275574..277652)	Shewanella loihica PV-4	4923874
YP_001092389.1	CDS	Shew_0258	NC_009092.1	277754	278701	R	KEGG: shm:Shewmr7_0294 hypothetical protein; hypothetical protein	complement(277754..278701)	Shewanella loihica PV-4	4923904
YP_001092390.1	CDS	Shew_0259	NC_009092.1	278814	279215	R	KEGG: sfr:Sfri_0404 hypothetical protein; hypothetical protein	complement(278814..279215)	Shewanella loihica PV-4	4920838
YP_001092391.1	CDS	Shew_0260	NC_009092.1	279538	280386	D	KEGG: she:Shewmr4_3647 hypothetical protein; hypothetical protein	279538..280386	Shewanella loihica PV-4	4920866
YP_001092392.1	CDS	Shew_0261	NC_009092.1	280637	280948	D	KEGG: sfr:Sfri_0406 hypothetical protein; hypothetical protein	280637..280948	Shewanella loihica PV-4	4920861
YP_001092393.1	CDS	Shew_0262	NC_009092.1	280966	282420	D	PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein	280966..282420	Shewanella loihica PV-4	4920854
YP_001092394.1	CDS	Shew_0263	NC_009092.1	282491	282796	D	KEGG: son:SO0331 hypothetical protein; hypothetical protein	282491..282796	Shewanella loihica PV-4	4920843
YP_001092395.1	CDS	Shew_0264	NC_009092.1	282793	283794	D	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase	282793..283794	Shewanella loihica PV-4	4920844
YP_001092396.1	CDS	Shew_0265	NC_009092.1	283924	284535	D	PFAM: DSBA oxidoreductase; KEGG: sdn:Sden_0285 DsbA oxidoreductase; DSBA oxidoreductase	283924..284535	Shewanella loihica PV-4	4920831
YP_001092397.1	CDS	Shew_0266	NC_009092.1	284873	285085	D	PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein	284873..285085	Shewanella loihica PV-4	4920826
YP_001092398.1	CDS	Shew_0267	NC_009092.1	285155	285361	R	PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein; hypothetical protein	complement(285155..285361)	Shewanella loihica PV-4	4920821
YP_001092399.1	CDS	Shew_0268	NC_009092.1	285548	285829	R	PFAM: Modulator of Rho-dependent transcription termination; KEGG: shm:Shewmr7_0308 transcriptional antiterminator, Rof; transcriptional antiterminator Rof	complement(285548..285829)	Shewanella loihica PV-4	4920818
YP_001092400.1	CDS	Shew_0269	NC_009092.1	285926	286813	D	PFAM: protein of unknown function DUF1223; KEGG: shm:Shewmr7_0309 protein of unknown function DUF1223; hypothetical protein	285926..286813	Shewanella loihica PV-4	4920815
YP_001092401.1	CDS	Shew_0270	NC_009092.1	286882	287517	R	KEGG: ppr:PBPRB1460 hypothetical protein; hypothetical protein	complement(286882..287517)	Shewanella loihica PV-4	4920805
YP_001092402.1	CDS	Shew_0271	NC_009092.1	287658	289007	D	KEGG: lpp:lpp1568 phospholipase; phospholipase	287658..289007	Shewanella loihica PV-4	4920771
YP_001092403.1	CDS	Shew_0272	NC_009092.1	289060	289803	R	PFAM: Cupin 2, conserved barrel domain protein; KEGG: she:Shewmr4_0303 hypothetical protein; cupin	complement(289060..289803)	Shewanella loihica PV-4	4920772
YP_001092404.1	CDS	Shew_0273	NC_009092.1	289975	291039	R	KEGG: son:SO1411 hypothetical protein; hypothetical protein	complement(289975..291039)	Shewanella loihica PV-4	4920768
YP_001092405.1	CDS	Shew_0274	NC_009092.1	291207	292340	R	KEGG: she:Shewmr4_0301 hypothetical protein; hypothetical protein	complement(291207..292340)	Shewanella loihica PV-4	4920764
YP_001092406.1	CDS	Shew_0275	NC_009092.1	292382	292750	R	KEGG: son:SO1413 tetraheme cytochrome c, putative; tetraheme cytochrome c	complement(292382..292750)	Shewanella loihica PV-4	4920726
YP_001092407.1	CDS	Shew_0276	NC_009092.1	292756	294273	R	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0299 flavocytochrome c; flavocytochrome c	complement(292756..294273)	Shewanella loihica PV-4	4920688
YP_001092408.1	CDS	Shew_0277	NC_009092.1	294605	295390	D	PFAM: regulatory protein, TetR; KEGG: son:SO1415 transcriptional regulator, TetR family; TetR family transcriptional regulator	294605..295390	Shewanella loihica PV-4	4920679
YP_001092409.1	CDS	Shew_0278	NC_009092.1	295678	296769	D	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase	295678..296769	Shewanella loihica PV-4	4920675
YP_001092410.1	CDS	Shew_0279	NC_009092.1	296813	297241	R	hypothetical protein	complement(296813..297241)	Shewanella loihica PV-4	4920661
YP_001092411.1	CDS	Shew_0280	NC_009092.1	297449	298150	R	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family; GntR family transcriptional regulator	complement(297449..298150)	Shewanella loihica PV-4	4920662
YP_001092412.1	CDS	Shew_0281	NC_009092.1	298344	299291	R	PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase	complement(298344..299291)	Shewanella loihica PV-4	4920658
YP_001092413.1	CDS	Shew_0282	NC_009092.1	299316	300200	R	PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_0319 phospholipid/glycerol acyltransferase; putative acyltransferase	complement(299316..300200)	Shewanella loihica PV-4	4920645
YP_001092414.1	CDS	Shew_0283	NC_009092.1	300316	301836	R	KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI	complement(300316..301836)	Shewanella loihica PV-4	4920642
YP_001092415.1	CDS	Shew_0284	NC_009092.1	302166	303491	D	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein; hypothetical protein	302166..303491	Shewanella loihica PV-4	4920639
YP_001092416.1	CDS	Shew_0285	NC_009092.1	303520	304401	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0972 GGDEF domain; diguanylate cyclase	complement(303520..304401)	Shewanella loihica PV-4	4920634
YP_001092417.1	CDS	Shew_0286	NC_009092.1	304599	305408	R	SMART: extracellular solute-binding protein, family 3; KEGG: she:Shewmr4_0358 ABC-type amino acid transport/signal transduction systems periplasmic component/domain-like protein; extracellular solute-binding protein	complement(304599..305408)	Shewanella loihica PV-4	4920627
YP_001092418.1	CDS	Shew_0287	NC_009092.1	305476	306360	R	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY	complement(305476..306360)	Shewanella loihica PV-4	4920618
YP_001092419.1	CDS	Shew_0288	NC_009092.1	306553	308034	D	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase	306553..308034	Shewanella loihica PV-4	4920619
YP_001092420.1	CDS	Shew_0289	NC_009092.1	308543	310216	D	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit	308543..310216	Shewanella loihica PV-4	4920601
YP_001092421.1	CDS	ilvM	NC_009092.1	310213	310482	D	KEGG: shm:Shewmr7_3663 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit	310213..310482	Shewanella loihica PV-4	4920590
YP_001092422.1	CDS	Shew_0291	NC_009092.1	310509	311432	D	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase	310509..311432	Shewanella loihica PV-4	4920579
YP_001092423.1	CDS	Shew_0292	NC_009092.1	311545	313395	D	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase	311545..313395	Shewanella loihica PV-4	4920565
YP_001092424.1	CDS	Shew_0293	NC_009092.1	313397	314947	D	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase	313397..314947	Shewanella loihica PV-4	4920560
YP_001092425.1	CDS	Shew_0294	NC_009092.1	315341	316483	D	PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine--glyoxylate transaminase	315341..316483	Shewanella loihica PV-4	4924049
YP_001092426.1	CDS	Shew_0295	NC_009092.1	316564	316989	R	hypothetical protein	complement(316564..316989)	Shewanella loihica PV-4	4922392
YP_001092427.1	CDS	Shew_0296	NC_009092.1	317368	317838	D	PFAM: heat shock protein Hsp20; KEGG: bja:blr7961 probable HspC2 heat shock protein; heat shock protein Hsp20	317368..317838	Shewanella loihica PV-4	4922393
YP_001092428.1	CDS	Shew_0297	NC_009092.1	317928	319835	R	KEGG: she:Shewmr4_0503 hypothetical protein; hypothetical protein	complement(317928..319835)	Shewanella loihica PV-4	4920864
YP_001092429.1	CDS	Shew_0298	NC_009092.1	319961	321049	R	KEGG: pat:Patl_0737 Zn-dependent hydrolase of the beta-lactamase fold; beta-lactamase fold Zn-dependent hydrolase	complement(319961..321049)	Shewanella loihica PV-4	4920691
YP_001092430.1	CDS	Shew_0299	NC_009092.1	321214	321822	D	PFAM: regulatory protein, TetR; KEGG: hch:HCH_03535 transcriptional regulator; TetR family transcriptional regulator	321214..321822	Shewanella loihica PV-4	4920625
YP_001092431.1	CDS	Shew_0300	NC_009092.1	321953	323311	R	PFAM: sodium:neurotransmitter symporter; KEGG: son:SO4339 sodium-dependent transporter, putative; sodium:neurotransmitter symporter	complement(321953..323311)	Shewanella loihica PV-4	4923910
YP_001092432.1	CDS	Shew_0301	NC_009092.1	323549	324049	R	PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4337 transcriptional regulator, AsnC family; AsnC family transcriptional regulator	complement(323549..324049)	Shewanella loihica PV-4	4923906
YP_001092433.1	CDS	Shew_0302	NC_009092.1	324124	324891	R	PFAM: phosphoesterase, PA-phosphatase related; KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase	complement(324124..324891)	Shewanella loihica PV-4	4923909
YP_001092434.1	CDS	Shew_0303	NC_009092.1	324998	326350	R	PFAM: Inner membrane CreD family protein; KEGG: shm:Shewmr7_3656 inner membrane CreD family protein; hypothetical protein	complement(324998..326350)	Shewanella loihica PV-4	4924233
YP_001092435.1	CDS	Shew_0304	NC_009092.1	326573	326833	R	PFAM: protein of unknown function DUF526; KEGG: shm:Shewmr7_3651 protein of unknown function DUF526; hypothetical protein	complement(326573..326833)	Shewanella loihica PV-4	4924234
YP_001092436.1	CDS	Shew_0305	NC_009092.1	327074	329086	D	TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep	327074..329086	Shewanella loihica PV-4	4923831
YP_001092437.1	CDS	Shew_0306	NC_009092.1	329116	331764	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_0377 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase	complement(329116..331764)	Shewanella loihica PV-4	4923833
YP_001092438.1	CDS	Shew_0307	NC_009092.1	332601	334523	R	PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein; diguanylate cyclase/phosphodiesterase	complement(332601..334523)	Shewanella loihica PV-4	4923941
YP_001092439.1	CDS	Shew_0308	NC_009092.1	334532	335239	R	KEGG: son:SO4322 hypothetical protein; hypothetical protein	complement(334532..335239)	Shewanella loihica PV-4	4924252
YP_001092440.1	CDS	Shew_0309	NC_009092.1	335256	335861	R	PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_0380 OmpA/MotB; OmpA/MotB domain-containing protein	complement(335256..335861)	Shewanella loihica PV-4	4924269
YP_001092441.1	CDS	Shew_0310	NC_009092.1	335861	337273	R	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sdn:Sden_0381 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein	complement(335861..337273)	Shewanella loihica PV-4	4924280
YP_001092442.1	CDS	Shew_0311	NC_009092.1	337305	338687	R	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3644 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein	complement(337305..338687)	Shewanella loihica PV-4	4924282
YP_001092443.1	CDS	Shew_0312	NC_009092.1	338680	340860	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein; ABC transporter-like protein	complement(338680..340860)	Shewanella loihica PV-4	4924283
YP_001092444.1	CDS	Shew_0313	NC_009092.1	340995	355505	R	TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein; outer membrane adhesin-like protein	complement(340995..355505)	Shewanella loihica PV-4	4924153
YP_001092445.1	CDS	Shew_0314	NC_009092.1	355622	360283	R	KEGG: sdn:Sden_0384 hypothetical protein; TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; SMART: Cadherin; outer membrane adhesin-like protein	complement(355622..360283)	Shewanella loihica PV-4	4923970
YP_001092446.1	CDS	Shew_0315	NC_009092.1	360568	361734	R	PFAM: HemY domain protein; KEGG: she:Shewmr4_0385 HemY domain protein; HemY domain-containing protein	complement(360568..361734)	Shewanella loihica PV-4	4924288
YP_001092447.1	CDS	Shew_0316	NC_009092.1	361731	362873	R	PFAM: protein of unknown function DUF513, hemX; KEGG: she:Shewmr4_0386 protein of unknown function DUF513, HemX; hypothetical protein	complement(361731..362873)	Shewanella loihica PV-4	4923984
YP_001092448.1	CDS	Shew_0317	NC_009092.1	362929	363660	R	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4	complement(362929..363660)	Shewanella loihica PV-4	4924048
YP_001092449.1	CDS	hemC	NC_009092.1	363663	364616	R	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase	complement(363663..364616)	Shewanella loihica PV-4	4923838
YP_001092450.1	CDS	cyaA	NC_009092.1	364802	367222	D	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase	364802..367222	Shewanella loihica PV-4	4920868
YP_001092451.1	CDS	Shew_0320	NC_009092.1	367230	367604	R	PFAM: Frataxin family protein; KEGG: shm:Shewmr7_3636 frataxin family protein; frataxin family protein	complement(367230..367604)	Shewanella loihica PV-4	4920869
YP_001092452.1	CDS	Shew_0321	NC_009092.1	368094	368261	D	hypothetical protein	368094..368261	Shewanella loihica PV-4	4924113
YP_001092453.1	CDS	Shew_0322	NC_009092.1	368267	369511	D	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_3634 diaminopimelate decarboxylase; diaminopimelate decarboxylase	368267..369511	Shewanella loihica PV-4	4924067
YP_001092454.1	CDS	dapF	NC_009092.1	369549	370388	D	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase	369549..370388	Shewanella loihica PV-4	4920558
YP_001092455.1	CDS	Shew_0324	NC_009092.1	370397	371023	D	PFAM: protein of unknown function DUF484; KEGG: sfr:Sfri_0446 protein of unknown function DUF484; hypothetical protein	370397..371023	Shewanella loihica PV-4	4921929
YP_001092456.1	CDS	Shew_0325	NC_009092.1	371031	371924	D	TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: shm:Shewmr7_3631 tyrosine recombinase XerC; tyrosine recombinase XerC	371031..371924	Shewanella loihica PV-4	4921970
YP_001092457.1	CDS	Shew_0326	NC_009092.1	371917	372639	D	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_3630 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase	371917..372639	Shewanella loihica PV-4	4922616
YP_001092458.1	CDS	Shew_0327	NC_009092.1	372741	373316	D	PFAM: HupE/UreJ protein; KEGG: she:Shewmr4_0396 HupE/UreJ protein; HupE/UreJ protein	372741..373316	Shewanella loihica PV-4	4922679
YP_001092459.1	CDS	Shew_0328	NC_009092.1	373429	374145	R	PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: she:Shewmr4_0398 hemerythrin HHE cation binding domain protein; hypothetical protein	complement(373429..374145)	Shewanella loihica PV-4	4922680
YP_001092460.1	CDS	fis	NC_009092.1	374408	374713	R	Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis	complement(374408..374713)	Shewanella loihica PV-4	4922462
YP_001092461.1	CDS	Shew_0330	NC_009092.1	374731	375699	R	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein	complement(374731..375699)	Shewanella loihica PV-4	4922938
YP_001092462.1	CDS	prmA	NC_009092.1	375851	376732	R	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase	complement(375851..376732)	Shewanella loihica PV-4	4923907
YP_001092463.1	CDS	Shew_0332	NC_009092.1	377079	377801	D	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit	377079..377801	Shewanella loihica PV-4	4923855
YP_001092464.1	CDS	Shew_0333	NC_009092.1	377946	378617	D	PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: she:Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex, transmembrane subunit	377946..378617	Shewanella loihica PV-4	4923178
YP_001092465.1	CDS	Shew_0334	NC_009092.1	378664	380670	D	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit	378664..380670	Shewanella loihica PV-4	4923883
YP_001092466.1	CDS	frdB	NC_009092.1	380667	381398	D	part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit	380667..381398	Shewanella loihica PV-4	4920845
YP_001092467.1	CDS	Shew_0336	NC_009092.1	381590	382513	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0402 transcriptional regulator, LysR family; LysR family transcriptional regulator	381590..382513	Shewanella loihica PV-4	4920846
YP_001092468.1	CDS	rho	NC_009092.1	382589	383854	R	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho	complement(382589..383854)	Shewanella loihica PV-4	4921931
YP_001092469.1	CDS	Shew_0338	NC_009092.1	384085	384411	R	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_3615 thioredoxin; thioredoxin	complement(384085..384411)	Shewanella loihica PV-4	4921538
YP_001092470.1	CDS	Shew_0339	NC_009092.1	384583	385890	D	enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB	384583..385890	Shewanella loihica PV-4	4922835
YP_001092471.1	CDS	Shew_0340	NC_009092.1	385890	386822	D	PFAM: Ppx/GppA phosphatase; KEGG: shm:Shewmr7_3613 Ppx/GppA phosphatase; Ppx/GppA phosphatase	385890..386822	Shewanella loihica PV-4	4923758
YP_001092472.1	CDS	Shew_0341	NC_009092.1	387111	389840	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sdn:Sden_2404 TonB-dependent receptor; TonB-dependent receptor	387111..389840	Shewanella loihica PV-4	4920671
YP_001092473.1	CDS	Shew_0342	NC_009092.1	389891	390427	R	KEGG: son:SO0409 hypothetical protein; hypothetical protein	complement(389891..390427)	Shewanella loihica PV-4	4923544
YP_001092474.1	CDS	Shew_0343	NC_009092.1	390657	391235	R	KEGG: son:SO0474 hypothetical protein; hypothetical protein	complement(390657..391235)	Shewanella loihica PV-4	4923422
YP_001092475.1	CDS	Shew_0344	NC_009092.1	391653	393173	D	PFAM: Na+/H+ antiporter NhaC; KEGG: sdn:Sden_3405 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC	391653..393173	Shewanella loihica PV-4	4923423
YP_001092476.1	CDS	Shew_0345	NC_009092.1	393299	393934	R	PFAM: Redoxin domain protein; KEGG: son:SO0476 thioredoxin, putative; redoxin domain-containing protein	complement(393299..393934)	Shewanella loihica PV-4	4921425
YP_001092477.1	CDS	Shew_0346	NC_009092.1	393931	394377	R	PFAM: cytochrome C biogenesis protein; KEGG: son:SO0477 cytochrome c-type biogenesis protein NrfF precursor; cytochrome C biogenesis protein	complement(393931..394377)	Shewanella loihica PV-4	4923807
YP_001092478.1	CDS	Shew_0347	NC_009092.1	394380	396371	R	PFAM: cytochrome c assembly protein; KEGG: she:Shewmr4_0487 cytochrome c-type biogenesis protein CcmF; cytochrome c assembly protein	complement(394380..396371)	Shewanella loihica PV-4	4922599
YP_001092479.1	CDS	Shew_0348	NC_009092.1	396809	398848	D	KEGG: shm:Shewmr7_3542 cytochrome c, putative; cytochrome c	396809..398848	Shewanella loihica PV-4	4920993
YP_001092480.1	CDS	Shew_0349	NC_009092.1	398930	399355	D	SMART: Rhodanese domain protein; KEGG: son:SO0480 hypothetical protein; rhodanese domain-containing protein	398930..399355	Shewanella loihica PV-4	4922043
YP_001092481.1	CDS	Shew_0350	NC_009092.1	399422	400225	D	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0490 FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type	399422..400225	Shewanella loihica PV-4	4923551
YP_001092482.1	CDS	Shew_0351	NC_009092.1	400254	400946	D	PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; hypothetical protein	400254..400946	Shewanella loihica PV-4	4920782
YP_001092483.1	CDS	Shew_0352	NC_009092.1	401064	401711	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	401064..401711	Shewanella loihica PV-4	4920783
YP_001092484.1	CDS	Shew_0353	NC_009092.1	401714	402661	D	PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_0493 polysulphide reductase, NrfD; polysulfide reductase NrfD	401714..402661	Shewanella loihica PV-4	4923142
YP_001092485.1	CDS	Shew_0354	NC_009092.1	402716	403204	D	PFAM: NosL family protein; KEGG: shm:Shewmr7_3536 NosL family protein; NosL family protein	402716..403204	Shewanella loihica PV-4	4920974
YP_001092486.1	CDS	Shew_0355	NC_009092.1	403215	404573	D	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: shm:Shewmr7_3535 periplasmic copper-binding protein; periplasmic copper-binding protein	403215..404573	Shewanella loihica PV-4	4920906
YP_001092487.1	CDS	Shew_0356	NC_009092.1	404570	405499	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_0496 ABC transporter-related protein; ABC transporter-like protein	404570..405499	Shewanella loihica PV-4	4921495
YP_001092488.1	CDS	Shew_0357	NC_009092.1	405496	406347	D	KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease	405496..406347	Shewanella loihica PV-4	4921713
YP_001092489.1	CDS	Shew_0358	NC_009092.1	406528	407808	D	PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC	406528..407808	Shewanella loihica PV-4	4921737
YP_001092490.1	CDS	fre	NC_009092.1	407878	408576	R	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase	complement(407878..408576)	Shewanella loihica PV-4	4922226
YP_001092491.1	CDS	Shew_0360	NC_009092.1	408711	410192	R	TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: shm:Shewmr7_3525 UbiD family decarboxylases; UbiD family decarboxylase	complement(408711..410192)	Shewanella loihica PV-4	4922227
YP_001092492.1	CDS	Shew_0361	NC_009092.1	410360	410836	D	KEGG: sfr:Sfri_3388 hypothetical protein; hypothetical protein	410360..410836	Shewanella loihica PV-4	4922817
YP_001092493.1	CDS	Shew_0362	NC_009092.1	410865	411581	R	KEGG: she:Shewmr4_1481 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I	complement(410865..411581)	Shewanella loihica PV-4	4923141
YP_001092494.1	CDS	Shew_0363	NC_009092.1	411699	412376	D	manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase	411699..412376	Shewanella loihica PV-4	4921315
YP_001092495.1	CDS	Shew_0364	NC_009092.1	412388	412879	R	KEGG: vfi:VF0366 MshA, mannose-sensitive haemaglutinin; mannose-sensitive hemaglutinin MshA	complement(412388..412879)	Shewanella loihica PV-4	4922516
YP_001092496.1	CDS	Shew_0365	NC_009092.1	413659	414147	D	KEGG: sfr:Sfri_0225 hypothetical protein; hypothetical protein	413659..414147	Shewanella loihica PV-4	4923255
YP_001092497.1	CDS	Shew_0366	NC_009092.1	414288	415238	D	TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: she:Shewmr4_3823 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II	414288..415238	Shewanella loihica PV-4	4920674
YP_001092498.1	CDS	Shew_0367	NC_009092.1	415238	417226	D	PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3915 cytochrome-c oxidase; cytochrome-c oxidase	415238..417226	Shewanella loihica PV-4	4924300
YP_001092499.1	CDS	Shew_0368	NC_009092.1	417223	417849	D	PFAM: cytochrome c oxidase, subunit III; KEGG: she:Shewmr4_3825 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III	417223..417849	Shewanella loihica PV-4	4924301
YP_001092500.1	CDS	Shew_0369	NC_009092.1	417846	418172	D	PFAM: cytochrome C oxidase subunit IV; KEGG: shm:Shewmr7_3917 cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV	417846..418172	Shewanella loihica PV-4	4924107
YP_001092501.1	CDS	Shew_0370	NC_009092.1	418183	419109	D	converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase	418183..419109	Shewanella loihica PV-4	4923368
YP_001092502.1	CDS	Shew_0371	NC_009092.1	419234	420100	R	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: stt:t3096 possible AraC-family transcriptional regulator; AraC family transcriptional regulator	complement(419234..420100)	Shewanella loihica PV-4	4923752
YP_001092503.1	CDS	Shew_0372	NC_009092.1	420195	420629	R	KEGG: sfr:Sfri_3594 hypothetical protein; hypothetical protein	complement(420195..420629)	Shewanella loihica PV-4	4923844
YP_001092504.1	CDS	Shew_0373	NC_009092.1	420651	421046	R	PFAM: protein of unknown function DUF971; KEGG: she:Shewmr4_3523 protein of unknown function DUF971; hypothetical protein	complement(420651..421046)	Shewanella loihica PV-4	4920606
YP_001092505.1	CDS	hslU	NC_009092.1	421123	422448	R	heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU	complement(421123..422448)	Shewanella loihica PV-4	4920943
YP_001092506.1	CDS	Shew_0375	NC_009092.1	422504	423028	R	heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit	complement(422504..423028)	Shewanella loihica PV-4	4924134
YP_001092507.1	CDS	Shew_0376	NC_009092.1	423623	425317	D	PFAM: Curlin associated repeat protein; KEGG: sfr:Sfri_1514 curlin associated repeat protein; curlin-associated protein	423623..425317	Shewanella loihica PV-4	4924135
YP_001092508.1	CDS	Shew_0377	NC_009092.1	425417	425995	R	PFAM: Sporulation domain protein; KEGG: sfr:Sfri_3763 sporulation domain protein; sporulation domain-containing protein	complement(425417..425995)	Shewanella loihica PV-4	4921515
YP_001092509.1	CDS	argS	NC_009092.1	426010	427755	R	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase	complement(426010..427755)	Shewanella loihica PV-4	4921410
YP_001092510.1	CDS	Shew_0379	NC_009092.1	427878	430073	R	KEGG: son:SO4122 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N'	complement(427878..430073)	Shewanella loihica PV-4	4921042
YP_001092511.1	CDS	Shew_0380	NC_009092.1	430339	431115	D	KEGG: sdn:Sden_3355 hypothetical protein; hypothetical protein	430339..431115	Shewanella loihica PV-4	4920603
YP_001092512.1	CDS	rpmE	NC_009092.1	431296	431508	D	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31	431296..431508	Shewanella loihica PV-4	4923156
YP_001092513.1	CDS	Shew_0382	NC_009092.1	431735	432505	D	PFAM: nuclease (SNase domain protein); KEGG: noc:Noc_1218 micrococcal nuclease (SNase-like); nuclease	431735..432505	Shewanella loihica PV-4	4924115
YP_001092514.1	CDS	Shew_0383	NC_009092.1	432685	433932	D	PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: sfr:Sfri_3757 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase	432685..433932	Shewanella loihica PV-4	4924001
YP_001092515.1	CDS	Shew_0384	NC_009092.1	434107	436017	D	regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD	434107..436017	Shewanella loihica PV-4	4924002
YP_001092516.1	CDS	Shew_0385	NC_009092.1	436254	437132	D	KEGG: sdn:Sden_3351 conserved hypothetical biogenesis protein MshI; biogenesis protein MshI	436254..437132	Shewanella loihica PV-4	4923521
YP_001092517.1	CDS	Shew_0386	NC_009092.1	437133	437738	D	PFAM: Fimbrial assembly family protein; KEGG: she:Shewmr4_3489 hypothetical protein; fimbrial assembly family protein	437133..437738	Shewanella loihica PV-4	4923176
YP_001092518.1	CDS	Shew_0387	NC_009092.1	437735	438391	D	KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ	437735..438391	Shewanella loihica PV-4	4923186
YP_001092519.1	CDS	Shew_0388	NC_009092.1	438372	438698	D	KEGG: she:Shewmr4_3487 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK	438372..438698	Shewanella loihica PV-4	4922149
YP_001092520.1	CDS	Shew_0389	NC_009092.1	438699	440390	D	TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3486 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL	438699..440390	Shewanella loihica PV-4	4923151
YP_001092521.1	CDS	Shew_0390	NC_009092.1	440395	441300	D	KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM	440395..441300	Shewanella loihica PV-4	4922578
YP_001092522.1	CDS	Shew_0391	NC_009092.1	441297	442457	D	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0468 tetratricopeptide TPR_2 repeat protein; hypothetical protein	441297..442457	Shewanella loihica PV-4	4921799
YP_001092523.1	CDS	Shew_0392	NC_009092.1	442454	444214	D	PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_0469 type II secretion system protein E; type II secretion system protein E	442454..444214	Shewanella loihica PV-4	4921800
YP_001092524.1	CDS	Shew_0393	NC_009092.1	444217	445434	D	PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein	444217..445434	Shewanella loihica PV-4	4921127
YP_001092525.1	CDS	Shew_0394	NC_009092.1	445467	445958	D	KEGG: shm:Shewmr7_0471 hypothetical protein; hypothetical protein	445467..445958	Shewanella loihica PV-4	4922050
YP_001092526.1	CDS	Shew_0395	NC_009092.1	446032	446667	D	KEGG: shm:Shewmr7_0472 methylation site containing protein; methylation site containing protein	446032..446667	Shewanella loihica PV-4	4921269
YP_001092527.1	CDS	Shew_0396	NC_009092.1	446757	447266	D	KEGG: she:Shewmr4_3296 methylation site containing protein; methylation site containing protein	446757..447266	Shewanella loihica PV-4	4921202
YP_001092528.1	CDS	Shew_0397	NC_009092.1	447281	447772	D	KEGG: she:Shewmr4_3479 methylation site containing protein; methylation site containing protein	447281..447772	Shewanella loihica PV-4	4920975
YP_001092529.1	CDS	Shew_0398	NC_009092.1	447919	448368	D	KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC	447919..448368	Shewanella loihica PV-4	4923239
YP_001092530.1	CDS	Shew_0399	NC_009092.1	448358	448909	D	KEGG: she:Shewmr4_3476 methylation site containing protein; methylation site containing protein	448358..448909	Shewanella loihica PV-4	4920883
YP_001092531.1	CDS	Shew_0400	NC_009092.1	448909	449706	D	KEGG: sfr:Sfri_3741 methylation site containing protein; methylation site containing protein	448909..449706	Shewanella loihica PV-4	4920884
YP_001092532.1	CDS	Shew_0401	NC_009092.1	449696	450133	D	KEGG: sfr:Sfri_3740 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP	449696..450133	Shewanella loihica PV-4	4922148
YP_001092533.1	CDS	Shew_0402	NC_009092.1	450126	452828	D	KEGG: she:Shewmr4_3473 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ	450126..452828	Shewanella loihica PV-4	4923579
YP_001092534.1	CDS	Shew_0403	NC_009092.1	452994	454043	D	functions in MreBCD complex in some organisms; rod shape-determining protein MreB	452994..454043	Shewanella loihica PV-4	4922767
YP_001092535.1	CDS	Shew_0404	NC_009092.1	454178	455059	D	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC	454178..455059	Shewanella loihica PV-4	4921963
YP_001092536.1	CDS	Shew_0405	NC_009092.1	455056	455544	D	PFAM: Rod shape-determining protein MreD; KEGG: sfr:Sfri_3736 rod shape-determining protein MreD; rod shape-determining protein MreD	455056..455544	Shewanella loihica PV-4	4922188
YP_001092537.1	CDS	Shew_0406	NC_009092.1	455544	456134	D	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sdn:Sden_3331 maf protein; maf protein	455544..456134	Shewanella loihica PV-4	4922229
YP_001092538.1	CDS	Shew_0407	NC_009092.1	456232	457734	D	involved in the processing of the 5'end of 16S rRNA; ribonuclease G	456232..457734	Shewanella loihica PV-4	4922996
YP_001092539.1	CDS	Shew_0408	NC_009092.1	457734	462044	D	KEGG: she:Shewmr4_3467 hypothetical protein; hypothetical protein	457734..462044	Shewanella loihica PV-4	4922997
YP_001092540.1	CDS	Shew_0409	NC_009092.1	461968	462798	D	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	461968..462798	Shewanella loihica PV-4	4923206
YP_001092541.1	CDS	Shew_0410	NC_009092.1	462840	464288	D	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: shm:Shewmr7_0486 peptidase U62, modulator of DNA gyrase; C69 family peptidase	462840..464288	Shewanella loihica PV-4	4921934
YP_001092542.1	CDS	Shew_0411	NC_009092.1	464481	465884	D	PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_0487 outer membrane efflux protein; outer membrane efflux protein	464481..465884	Shewanella loihica PV-4	4921659
YP_001092543.1	CDS	Shew_0412	NC_009092.1	465874	466845	D	PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein	465874..466845	Shewanella loihica PV-4	4922231
YP_001092544.1	CDS	Shew_0413	NC_009092.1	466858	468030	D	PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3462 ABC-2 type transporter; ABC transporter	466858..468030	Shewanella loihica PV-4	4922608
YP_001092545.1	CDS	Shew_0414	NC_009092.1	468027	469172	D	PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3461 ABC-2 type transporter; ABC transporter	468027..469172	Shewanella loihica PV-4	4922704
YP_001092546.1	CDS	Shew_0415	NC_009092.1	469209	469751	R	PFAM: protein of unknown function DUF615; KEGG: sdn:Sden_3068 protein of unknown function DUF615; hypothetical protein	complement(469209..469751)	Shewanella loihica PV-4	4920994
YP_001092547.1	CDS	Shew_0416	NC_009092.1	469898	471238	D	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: sfr:Sfri_3721 peptidase U62, modulator of DNA gyrase; C69 family peptidase	469898..471238	Shewanella loihica PV-4	4920995
YP_001092548.1	CDS	Shew_0417	NC_009092.1	471407	471754	D	PFAM: regulatory protein, ArsR; KEGG: she:Shewmr4_0532 transcriptional regulator, ArsR family; ArsR family transcriptional regulator	471407..471754	Shewanella loihica PV-4	4921978
YP_001092549.1	CDS	Shew_0418	NC_009092.1	471758	472792	D	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sde:Sde_3779 arsenical pump membrane protein, putative; arsenical-resistance protein	471758..472792	Shewanella loihica PV-4	4924340
YP_001092550.1	CDS	Shew_0419	NC_009092.1	472828	473838	D	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase	472828..473838	Shewanella loihica PV-4	4924341
YP_001092551.1	CDS	Shew_0420	NC_009092.1	473839	475071	D	PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0539 transporter, putative; major facilitator superfamily transporter	473839..475071	Shewanella loihica PV-4	4924357
YP_001092552.1	CDS	Shew_0421	NC_009092.1	475257	475505	D	PFAM: PspC domain protein; KEGG: nfa:nfa8710 hypothetical protein; phage shock protein C, PspC	475257..475505	Shewanella loihica PV-4	4922430
YP_001092553.1	CDS	Shew_0422	NC_009092.1	475572	476057	R	KEGG: ilo:IL0802 hypothetical protein; hypothetical protein	complement(475572..476057)	Shewanella loihica PV-4	4922978
YP_001092554.1	CDS	Shew_0423	NC_009092.1	476135	476557	D	PFAM: regulatory protein, MerR; KEGG: ilo:IL0801 transcriptional regulator, MerR family; MerR family transcriptional regulator	476135..476557	Shewanella loihica PV-4	4924392
YP_001092555.1	CDS	Shew_0424	NC_009092.1	476762	478135	D	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein	476762..478135	Shewanella loihica PV-4	4924393
YP_001092556.1	CDS	Shew_0425	NC_009092.1	478213	479313	R	PFAM: ABC-2 type transporter; KEGG: sfr:Sfri_3539 ABC-2 type transporter; ABC transporter	complement(478213..479313)	Shewanella loihica PV-4	4924394
YP_001092557.1	CDS	Shew_0426	NC_009092.1	479300	480322	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sfr:Sfri_3538 ABC transporter-related protein; ABC transporter-like protein	complement(479300..480322)	Shewanella loihica PV-4	4924072
YP_001092558.1	CDS	Shew_0427	NC_009092.1	480322	481275	R	KEGG: sfr:Sfri_3537 hypothetical protein; hypothetical protein	complement(480322..481275)	Shewanella loihica PV-4	4924114
YP_001092559.1	CDS	Shew_0428	NC_009092.1	481506	481679	R	KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein	complement(481506..481679)	Shewanella loihica PV-4	4924133
YP_001092560.1	CDS	Shew_0429	NC_009092.1	482008	482700	R	KEGG: she:Shewmr4_0547 hypothetical protein; hypothetical protein	complement(482008..482700)	Shewanella loihica PV-4	4924226
YP_001092561.1	CDS	Shew_0430	NC_009092.1	482940	483212	R	PFAM: histone family protein DNA-binding protein; KEGG: sfr:Sfri_3532 histone family protein DNA-binding protein; histone family protein DNA-binding protein	complement(482940..483212)	Shewanella loihica PV-4	4921225
YP_001092562.1	CDS	Shew_0431	NC_009092.1	483467	483877	R	KEGG: son:SO0550 hypothetical protein; hypothetical protein	complement(483467..483877)	Shewanella loihica PV-4	4921556
YP_001092563.1	CDS	Shew_0432	NC_009092.1	484163	484672	D	KEGG: shm:Shewmr7_3479 hypothetical protein; hypothetical protein	484163..484672	Shewanella loihica PV-4	4921557
YP_001092564.1	CDS	Shew_0433	NC_009092.1	484694	485083	R	hypothetical protein	complement(484694..485083)	Shewanella loihica PV-4	4922060
YP_001092565.1	CDS	Shew_0434	NC_009092.1	485176	485487	R	KEGG: shm:Shewmr7_3477 hypothetical protein; hypothetical protein	complement(485176..485487)	Shewanella loihica PV-4	4922576
YP_001092566.1	CDS	Shew_0435	NC_009092.1	485735	486256	D	KEGG: son:SO0554 hypothetical protein; hypothetical protein	485735..486256	Shewanella loihica PV-4	4923081
YP_001092567.1	CDS	Shew_0436	NC_009092.1	486271	488043	R	PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3475 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase	complement(486271..488043)	Shewanella loihica PV-4	4923292
YP_001092568.1	CDS	Shew_0437	NC_009092.1	488177	488488	R	KEGG: shm:Shewmr7_3474 hypothetical protein; hypothetical protein	complement(488177..488488)	Shewanella loihica PV-4	4922764
YP_001092569.1	CDS	Shew_0438	NC_009092.1	488537	489421	D	PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein	488537..489421	Shewanella loihica PV-4	4924205
YP_001092570.1	CDS	Shew_0439	NC_009092.1	489529	490161	D	PFAM: CheD family protein; KEGG: sde:Sde_3103 CheD, stimulates methylation of MCP proteins; MCP proteins methylation stimulator CheD	489529..490161	Shewanella loihica PV-4	4920556
YP_001092571.1	CDS	Shew_0440	NC_009092.1	490170	491024	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3472 methyltransferase type 11; type 12 methyltransferase	complement(490170..491024)	Shewanella loihica PV-4	4920557
YP_001092572.1	CDS	Shew_0441	NC_009092.1	491155	491994	D	PFAM: MaoC domain protein dehydratase; KEGG: shm:Shewmr7_3471 MaoC domain protein dehydratase; dehydratase	491155..491994	Shewanella loihica PV-4	4920554
YP_001092573.1	CDS	Shew_0442	NC_009092.1	492128	493018	R	PFAM: aldo/keto reductase; KEGG: she:Shewmr4_0560 aldo/keto reductase; aldo/keto reductase	complement(492128..493018)	Shewanella loihica PV-4	4920651
YP_001092574.1	CDS	Shew_0443	NC_009092.1	493192	494886	D	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase	493192..494886	Shewanella loihica PV-4	4920697
YP_001092575.1	CDS	Shew_0444	NC_009092.1	495031	496653	R	PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_3468 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS	complement(495031..496653)	Shewanella loihica PV-4	4920769
YP_001092576.1	CDS	Shew_0445	NC_009092.1	496778	497113	D	KEGG: she:Shewmr4_0563 hypothetical protein; hypothetical protein	496778..497113	Shewanella loihica PV-4	4920848
YP_001092577.1	CDS	Shew_0446	NC_009092.1	497660	497920	D	KEGG: sfr:Sfri_3518 hypothetical protein; hypothetical protein	497660..497920	Shewanella loihica PV-4	4920931
YP_001092578.1	CDS	Shew_0447	NC_009092.1	497998	499203	D	KEGG: shm:Shewmr7_3464 hypothetical protein; hypothetical protein	497998..499203	Shewanella loihica PV-4	4921049
YP_001092579.1	CDS	Shew_0448	NC_009092.1	499187	500098	D	PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute binding protein	499187..500098	Shewanella loihica PV-4	4921050
YP_001092580.1	CDS	Shew_0449	NC_009092.1	500159	500950	D	PFAM: ABC-3 protein; KEGG: shm:Shewmr7_3462 ABC-3 protein; ABC-3 protein	500159..500950	Shewanella loihica PV-4	4921418
YP_001092581.1	CDS	Shew_0450	NC_009092.1	501186	501920	D	KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase	501186..501920	Shewanella loihica PV-4	4921434
YP_001092582.1	CDS	Shew_0451	NC_009092.1	501945	502352	D	PFAM: protein of unknown function DUF1260; KEGG: sfr:Sfri_3513 protein of unknown function DUF1260; hypothetical protein	501945..502352	Shewanella loihica PV-4	4921641
YP_001092583.1	CDS	Shew_0452	NC_009092.1	502430	503401	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_3512 diguanylate cyclase; diguanylate cyclase	complement(502430..503401)	Shewanella loihica PV-4	4921661
YP_001092584.1	CDS	Shew_0453	NC_009092.1	503415	504410	R	PFAM: response regulator receiver; KEGG: shm:Shewmr7_3458 response regulator receiver protein; response regulator receiver protein	complement(503415..504410)	Shewanella loihica PV-4	4921663
YP_001092585.1	CDS	Shew_0454	NC_009092.1	504816	505625	D	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase	504816..505625	Shewanella loihica PV-4	4921311
YP_001092586.1	CDS	Shew_0455	NC_009092.1	505791	506294	D	PFAM: uncharacterized protein UPF0114; KEGG: cps:CPS_1797 hypothetical protein; hypothetical protein	505791..506294	Shewanella loihica PV-4	4921695
YP_001092587.1	CDS	Shew_0456	NC_009092.1	506342	507226	R	KEGG: she:Shewmr4_0574 hypothetical protein; hypothetical protein	complement(506342..507226)	Shewanella loihica PV-4	4921696
YP_001092588.1	CDS	Shew_0457	NC_009092.1	507362	510268	R	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA	complement(507362..510268)	Shewanella loihica PV-4	4921736
YP_001092589.1	CDS	Shew_0458	NC_009092.1	510634	512028	D	PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein; PhoH family protein	510634..512028	Shewanella loihica PV-4	4921798
YP_001092590.1	CDS	Shew_0459	NC_009092.1	512269	515961	D	KEGG: she:Shewmr4_0577 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase	512269..515961	Shewanella loihica PV-4	4921829
YP_001092591.1	CDS	Shew_0460	NC_009092.1	516184	518583	D	KEGG: sfr:Sfri_3501 hypothetical protein; hypothetical protein	516184..518583	Shewanella loihica PV-4	4921856
YP_001092592.1	CDS	Shew_0461	NC_009092.1	518656	519195	R	hypothetical protein	complement(518656..519195)	Shewanella loihica PV-4	4921694
YP_001092593.1	CDS	Shew_0462	NC_009092.1	519508	519813	D	hypothetical protein	519508..519813	Shewanella loihica PV-4	4921960
YP_001092594.1	CDS	Shew_0463	NC_009092.1	519932	520315	R	KEGG: she:Shewmr4_3425 hypothetical protein; hypothetical protein	complement(519932..520315)	Shewanella loihica PV-4	4922015
YP_001092595.1	CDS	Shew_0464	NC_009092.1	520368	520751	R	hypothetical protein	complement(520368..520751)	Shewanella loihica PV-4	4922016
YP_001092596.1	CDS	Shew_0465	NC_009092.1	520912	521322	R	KEGG: rba:RB544 hypothetical protein; hypothetical protein	complement(520912..521322)	Shewanella loihica PV-4	4922041
YP_001092597.1	CDS	Shew_0466	NC_009092.1	521519	524593	R	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_0550 acriflavin resistance protein; acriflavin resistance protein	complement(521519..524593)	Shewanella loihica PV-4	4922125
YP_001092598.1	CDS	Shew_0467	NC_009092.1	524597	525679	R	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3401 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	complement(524597..525679)	Shewanella loihica PV-4	4922146
YP_001092599.1	CDS	Shew_0468	NC_009092.1	525876	526820	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_1434 transcriptional regulator, LysR family protein; LysR family transcriptional regulator	525876..526820	Shewanella loihica PV-4	4922269
YP_001092600.1	CDS	Shew_0469	NC_009092.1	526823	527494	R	PFAM: pentapeptide repeat protein; KEGG: ppr:PBPRB0125 hypothetical protein; pentapeptide repeat-containing protein	complement(526823..527494)	Shewanella loihica PV-4	4921964
YP_001092601.1	CDS	Shew_0470	NC_009092.1	527511	528878	R	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: she:Shewmr4_3399 MATE efflux family protein; MATE efflux family protein	complement(527511..528878)	Shewanella loihica PV-4	4922358
YP_001092602.1	CDS	groES	NC_009092.1	529106	529396	D	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES	529106..529396	Shewanella loihica PV-4	4922411
YP_001092603.1	CDS	groEL	NC_009092.1	529453	531102	D	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL	529453..531102	Shewanella loihica PV-4	4922412
YP_001092604.1	CDS	Shew_0473	NC_009092.1	531629	532156	R	hypothetical protein	complement(531629..532156)	Shewanella loihica PV-4	4921906
YP_001092605.1	CDS	Shew_0474	NC_009092.1	532153	532500	R	KEGG: vfi:VF2040 hypothetical protein; hypothetical protein	complement(532153..532500)	Shewanella loihica PV-4	4922451
YP_001092606.1	CDS	Shew_0475	NC_009092.1	532487	533653	R	KEGG: vfi:VF2039 hypothetical protein; hypothetical protein	complement(532487..533653)	Shewanella loihica PV-4	4922498
YP_001092607.1	CDS	Shew_0476	NC_009092.1	533870	534667	R	PFAM: protein of unknown function DUF88; KEGG: sfr:Sfri_3658 protein of unknown function DUF88; hypothetical protein	complement(533870..534667)	Shewanella loihica PV-4	4921683
YP_001092608.1	CDS	Shew_0477	NC_009092.1	534699	535280	R	hypothetical protein	complement(534699..535280)	Shewanella loihica PV-4	4922571
YP_001092609.1	CDS	Shew_0478	NC_009092.1	535900	536136	D	PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0557 transcriptional regulator, XRE family; XRE family transcriptional regulator	535900..536136	Shewanella loihica PV-4	4922589
YP_001092610.1	CDS	Shew_0479	NC_009092.1	536139	537440	D	PFAM: HipA domain protein; KEGG: she:Shewmr4_3395 HipA domain protein; HipA domain-containing protein	536139..537440	Shewanella loihica PV-4	4922371
YP_001092611.1	CDS	Shew_0480	NC_009092.1	537510	538568	D	PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpp:lpp1174 hypothetical protein; Sel1 domain-containing protein	537510..538568	Shewanella loihica PV-4	4922372
YP_001092612.1	CDS	Shew_0481	NC_009092.1	538703	539107	D	KEGG: sfr:Sfri_3654 hypothetical protein; hypothetical protein	538703..539107	Shewanella loihica PV-4	4922771
YP_001092613.1	CDS	Shew_0482	NC_009092.1	539397	540563	D	KEGG: sfr:Sfri_2138 hypothetical protein; hypothetical protein	539397..540563	Shewanella loihica PV-4	4922959
YP_001092614.1	CDS	Shew_0483	NC_009092.1	540566	541378	D	KEGG: sfr:Sfri_2137 hypothetical protein; hypothetical protein	540566..541378	Shewanella loihica PV-4	4922714
YP_001092615.1	CDS	Shew_0484	NC_009092.1	541500	542771	R	hypothetical protein	complement(541500..542771)	Shewanella loihica PV-4	4922575
YP_001092616.1	CDS	Shew_0485	NC_009092.1	542808	543425	R	PFAM: Cold-shock protein, DNA-binding; Excalibur domain protein; SMART: Cold shock protein; KEGG: sfr:Sfri_3647 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein	complement(542808..543425)	Shewanella loihica PV-4	4922570
YP_001092617.1	CDS	Shew_0486	NC_009092.1	543518	544534	R	PFAM: permease; KEGG: sfr:Sfri_1725 permease; permease	complement(543518..544534)	Shewanella loihica PV-4	4923296
YP_001092618.1	CDS	Shew_0487	NC_009092.1	544562	544810	R	TIGRFAM: redox-active disulfide protein 2; KEGG: mbu:Mbur_0943 redox-active disulfide protein 2; redox-active disulfide protein 2	complement(544562..544810)	Shewanella loihica PV-4	4923301
YP_001092619.1	CDS	Shew_0488	NC_009092.1	544821	545225	R	PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; ArsR family transcriptional regulator	complement(544821..545225)	Shewanella loihica PV-4	4923302
YP_001092620.1	CDS	Shew_0489	NC_009092.1	545503	545931	D	hypothetical protein	545503..545931	Shewanella loihica PV-4	4923444
YP_001092621.1	CDS	Shew_0490	NC_009092.1	546050	548077	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_3813 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase	546050..548077	Shewanella loihica PV-4	4923467
YP_001092622.1	CDS	Shew_0491	NC_009092.1	548159	548413	R	KEGG: son:SO0721 hypothetical protein; hypothetical protein	complement(548159..548413)	Shewanella loihica PV-4	4923534
YP_001092623.1	CDS	Shew_0492	NC_009092.1	548543	550135	R	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer	complement(548543..550135)	Shewanella loihica PV-4	4923440
YP_001092624.1	CDS	Shew_0493	NC_009092.1	550297	550803	R	KEGG: son:SO0720 hypothetical protein; hypothetical protein	complement(550297..550803)	Shewanella loihica PV-4	4923550
YP_001092625.1	CDS	Shew_0494	NC_009092.1	551047	551799	D	hypothetical protein	551047..551799	Shewanella loihica PV-4	4923577
YP_001092626.1	CDS	Shew_0495	NC_009092.1	551984	552685	D	KEGG: she:Shewmr4_3378 hypothetical protein; hypothetical protein	551984..552685	Shewanella loihica PV-4	4923643
YP_001092627.1	CDS	Shew_0496	NC_009092.1	553040	554413	R	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: shm:Shewmr7_3308 amino acid carrier protein; amino acid carrier protein	complement(553040..554413)	Shewanella loihica PV-4	4923644
YP_001092628.1	CDS	Shew_0497	NC_009092.1	555306	557003	D	putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM	555306..557003	Shewanella loihica PV-4	4923647
YP_001092629.1	CDS	Shew_0498	NC_009092.1	557009	557638	R	KEGG: son:SO0492 hypothetical flavoprotein oxygenase; flavoprotein oxygenase	complement(557009..557638)	Shewanella loihica PV-4	4923729
YP_001092630.1	CDS	Shew_0499	NC_009092.1	557784	559136	D	KEGG: ilo:IL1431 Xaa-Pro aminopeptidase family enzyme; Xaa-Pro aminopeptidase family protein	557784..559136	Shewanella loihica PV-4	4923873
YP_001092631.1	CDS	Shew_0500	NC_009092.1	559225	560241	D	KEGG: dps:DP1291 hypothetical protein; hypothetical protein	559225..560241	Shewanella loihica PV-4	4924273
YP_001092632.1	CDS	Shew_0501	NC_009092.1	560444	560728	D	PFAM: protein of unknown function DUF134; KEGG: son:SO0727 hypothetical protein; hypothetical protein	560444..560728	Shewanella loihica PV-4	4921658
YP_001092633.1	CDS	Shew_0502	NC_009092.1	560738	561265	D	KEGG: son:SO0728 hypothetical protein; hypothetical protein	560738..561265	Shewanella loihica PV-4	4922655
YP_001092634.1	CDS	Shew_0503	NC_009092.1	561271	561612	R	KEGG: shm:Shewmr7_0578 thioredoxin domain; thioredoxin domain-containing protein	complement(561271..561612)	Shewanella loihica PV-4	4923801
YP_001092635.1	CDS	Shew_0504	NC_009092.1	561877	563088	D	PFAM: NnrS family protein; KEGG: sfr:Sfri_3037 NnrS family protein; NnrS family protein	561877..563088	Shewanella loihica PV-4	4923802
YP_001092636.1	CDS	Shew_0505	NC_009092.1	563145	564503	D	PFAM: cytochrome c552; KEGG: sfr:Sfri_3036 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase	563145..564503	Shewanella loihica PV-4	4923237
YP_001092637.1	CDS	Shew_0506	NC_009092.1	564571	565488	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4154 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(564571..565488)	Shewanella loihica PV-4	4923517
YP_001092638.1	CDS	Shew_0507	NC_009092.1	565616	566707	D	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO4153 N-ethylmaleimide reductase, putative; NADH:flavin oxidoreductase	565616..566707	Shewanella loihica PV-4	4923558
YP_001092639.1	CDS	Shew_0508	NC_009092.1	566781	567938	R	PFAM: Xanthine/uracil/vitamin C permease; KEGG: she:Shewmr4_3514 sulphate transporter; xanthine/uracil/vitamin C permease	complement(566781..567938)	Shewanella loihica PV-4	4923912
YP_001092640.1	CDS	Shew_0509	NC_009092.1	568204	568629	D	KEGG: vpa:VPA1145 hypothetical protein; hypothetical protein	568204..568629	Shewanella loihica PV-4	4924148
YP_001092641.1	CDS	Shew_0510	NC_009092.1	568682	577120	R	TIGRFAM: putative outer membrane adhesin like proteiin; KEGG: son:SO4149 RTX toxin, putative; outer membrane adhesin-like protein	complement(568682..577120)	Shewanella loihica PV-4	4920947
YP_001092642.1	CDS	Shew_0511	NC_009092.1	577130	578455	R	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4148 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein	complement(577130..578455)	Shewanella loihica PV-4	4921196
YP_001092643.1	CDS	Shew_0512	NC_009092.1	578448	580547	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4147 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein	complement(578448..580547)	Shewanella loihica PV-4	4921197
YP_001092644.1	CDS	Shew_0513	NC_009092.1	580547	582205	R	PFAM: ABC transporter-related protein; KEGG: son:SO4146 toxin secretion ABC transporter protein, HlyB family; ABC transporter-like protein	complement(580547..582205)	Shewanella loihica PV-4	4921857
YP_001092645.1	CDS	Shew_0514	NC_009092.1	582488	583894	R	KEGG: shm:Shewmr7_0439 cytochrome c, putative; cytochrome c	complement(582488..583894)	Shewanella loihica PV-4	4921859
YP_001092646.1	CDS	Shew_0515	NC_009092.1	583939	585651	R	KEGG: son:SO4143 hypothetical protein; hypothetical protein	complement(583939..585651)	Shewanella loihica PV-4	4922422
YP_001092647.1	CDS	Shew_0516	NC_009092.1	585716	586045	R	KEGG: shm:Shewmr7_0441 cytochrome c family protein; cytochrome c family protein	complement(585716..586045)	Shewanella loihica PV-4	4922686
YP_001092648.1	CDS	Shew_0517	NC_009092.1	586558	587754	D	KEGG: eca:ECA0549 putative plasmid transfer protein; putative plasmid transfer protein	586558..587754	Shewanella loihica PV-4	4923714
YP_001092649.1	CDS	Shew_0518	NC_009092.1	587818	588558	R	PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein	complement(587818..588558)	Shewanella loihica PV-4	4921976
YP_001092650.1	CDS	Shew_0519	NC_009092.1	588637	588951	R	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ	complement(588637..588951)	Shewanella loihica PV-4	4920512
YP_001092651.1	CDS	Shew_0520	NC_009092.1	589176	590342	D	KEGG: she:Shewmr4_3439 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase	589176..590342	Shewanella loihica PV-4	4920513
YP_001092652.1	CDS	metL	NC_009092.1	590362	592755	D	multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II	590362..592755	Shewanella loihica PV-4	4924078
YP_001092653.1	CDS	metF	NC_009092.1	593019	593909	D	MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase	593019..593909	Shewanella loihica PV-4	4920970
YP_001092654.1	CDS	Shew_0523	NC_009092.1	594034	594633	D	KEGG: shm:Shewmr7_0519 cytochrome c family protein; cytochrome c family protein	594034..594633	Shewanella loihica PV-4	4921805
YP_001092655.1	CDS	Shew_0524	NC_009092.1	594644	595705	D	PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein; cytochrome c, class I	594644..595705	Shewanella loihica PV-4	4922077
YP_001092656.1	CDS	Shew_0525	NC_009092.1	595779	596003	D	KEGG: sdn:Sden_0645 hypothetical protein; hypothetical protein	595779..596003	Shewanella loihica PV-4	4922078
YP_001092657.1	CDS	Shew_0526	NC_009092.1	596035	596406	D	KEGG: sfr:Sfri_3540 hypothetical protein; hypothetical protein	596035..596406	Shewanella loihica PV-4	4923179
YP_001092658.1	CDS	Shew_0527	NC_009092.1	596449	597303	R	PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein	complement(596449..597303)	Shewanella loihica PV-4	4923875
YP_001092659.1	CDS	Shew_0528	NC_009092.1	597398	598222	R	PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein	complement(597398..598222)	Shewanella loihica PV-4	4923876
YP_001092660.1	CDS	Shew_0529	NC_009092.1	598302	599129	R	PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein	complement(598302..599129)	Shewanella loihica PV-4	4920816
YP_001092661.1	CDS	Shew_0530	NC_009092.1	599363	600490	D	PFAM: FAD dependent oxidoreductase; KEGG: pae:PA5145 hypothetical protein; FAD dependent oxidoreductase	599363..600490	Shewanella loihica PV-4	4920742
YP_001092662.1	CDS	Shew_0531	NC_009092.1	600553	602352	R	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_0528 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase	complement(600553..602352)	Shewanella loihica PV-4	4921020
YP_001092663.1	CDS	Shew_0532	NC_009092.1	602600	603628	R	PFAM: peptidase M28; KEGG: shm:Shewmr7_0529 peptidase M28; peptidase M28	complement(602600..603628)	Shewanella loihica PV-4	4922120
YP_001092664.1	CDS	Shew_0533	NC_009092.1	603761	606586	R	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter-related protein; KEGG: shm:Shewmr7_0531 excinuclease ABC, A subunit; excinuclease ABC subunit A	complement(603761..606586)	Shewanella loihica PV-4	4922421
YP_001092665.1	CDS	Shew_0534	NC_009092.1	606789	608156	D	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3420 major facilitator superfamily MFS_1; major facilitator superfamily transporter	606789..608156	Shewanella loihica PV-4	4922836
YP_001092666.1	CDS	Shew_0535	NC_009092.1	608229	608891	D	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sfr:Sfri_3710 single-strand binding protein; single-strand binding protein	608229..608891	Shewanella loihica PV-4	4923272
YP_001092667.1	CDS	Shew_0536	NC_009092.1	609087	610076	D	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: shm:Shewmr7_0746 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A	609087..610076	Shewanella loihica PV-4	4923273
YP_001092668.1	CDS	Shew_0537	NC_009092.1	610364	610642	D	KEGG: shm:Shewmr7_0747 hypothetical protein; hypothetical protein	610364..610642	Shewanella loihica PV-4	4924047
YP_001092669.1	CDS	Shew_0538	NC_009092.1	610824	611030	D	PFAM: PspC domain protein; KEGG: she:Shewmr4_3241 phage shock protein C, PspC; phage shock protein C, PspC	610824..611030	Shewanella loihica PV-4	4920531
YP_001092670.1	CDS	Shew_0539	NC_009092.1	611049	611408	D	hypothetical protein	611049..611408	Shewanella loihica PV-4	4920509
YP_001092671.1	CDS	Shew_0540	NC_009092.1	611424	612161	R	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_0749 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	complement(611424..612161)	Shewanella loihica PV-4	4920465
YP_001092672.1	CDS	Shew_0541	NC_009092.1	612211	612678	D	PFAM: protein of unknown function DUF461; KEGG: shm:Shewmr7_0750 protein of unknown function DUF461; hypothetical protein	612211..612678	Shewanella loihica PV-4	4922499
YP_001092673.1	CDS	Shew_0542	NC_009092.1	612691	613662	D	KEGG: son:SO3906 hypothetical protein; hypothetical protein	612691..613662	Shewanella loihica PV-4	4924132
YP_001092674.1	CDS	Shew_0543	NC_009092.1	613667	614425	D	KEGG: she:Shewmr4_3237 hypothetical protein; hypothetical protein	613667..614425	Shewanella loihica PV-4	4921171
YP_001092675.1	CDS	tolC	NC_009092.1	614493	615839	R	trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein	complement(614493..615839)	Shewanella loihica PV-4	4921172
YP_001092676.1	CDS	Shew_0545	NC_009092.1	616103	616711	D	PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_3235 nucleoside diphosphate pyrophosphatase; ADP-ribose diphosphatase	616103..616711	Shewanella loihica PV-4	4922591
YP_001092677.1	CDS	Shew_0546	NC_009092.1	616708	617154	D	PFAM: protein of unknown function DUF1249; KEGG: she:Shewmr4_3234 protein of unknown function DUF1249; hypothetical protein	616708..617154	Shewanella loihica PV-4	4923183
YP_001092678.1	CDS	Shew_0547	NC_009092.1	617164	618003	D	PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: she:Shewmr4_3233 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein	617164..618003	Shewanella loihica PV-4	4921048
YP_001092679.1	CDS	Shew_0548	NC_009092.1	618198	618776	D	PFAM: protein of unknown function UPF0227; KEGG: she:Shewmr4_3232 protein of unknown function UPF0227; hypothetical protein	618198..618776	Shewanella loihica PV-4	4923299
YP_001092680.1	CDS	Shew_0549	NC_009092.1	618825	620711	D	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B	618825..620711	Shewanella loihica PV-4	4921321
YP_001092681.1	CDS	Shew_0550	NC_009092.1	620759	621925	D	KEGG: shm:Shewmr7_0759 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase	620759..621925	Shewanella loihica PV-4	4921871
YP_001092682.1	CDS	Shew_0551	NC_009092.1	621922	624189	D	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A	621922..624189	Shewanella loihica PV-4	4921913
YP_001092683.1	CDS	Shew_0552	NC_009092.1	624267	624458	R	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sdn:Sden_3217 BFD-like (2Fe-2S)-binding region; BFD/(2Fe-2S)-binding domain-containing protein	complement(624267..624458)	Shewanella loihica PV-4	4921914
YP_001092684.1	CDS	Shew_0553	NC_009092.1	624800	625726	R	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: she:Shewmr4_0584 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase	complement(624800..625726)	Shewanella loihica PV-4	4922615
YP_001092685.1	CDS	Shew_0554	NC_009092.1	626221	626928	R	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shm:Shewmr7_3444 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase	complement(626221..626928)	Shewanella loihica PV-4	4922522
YP_001092686.1	CDS	Shew_0555	NC_009092.1	626928	630110	R	PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_0587 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS	complement(626928..630110)	Shewanella loihica PV-4	4923759
YP_001092687.1	CDS	Shew_0556	NC_009092.1	630235	631125	R	PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_3442 protein of unknown function DUF6, transmembrane; hypothetical protein	complement(630235..631125)	Shewanella loihica PV-4	4921419
YP_001092688.1	CDS	psd	NC_009092.1	631134	631994	R	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase	complement(631134..631994)	Shewanella loihica PV-4	4924150
YP_001092689.1	CDS	Shew_0558	NC_009092.1	632038	633051	R	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase	complement(632038..633051)	Shewanella loihica PV-4	4920416
YP_001092690.1	CDS	Shew_0559	NC_009092.1	633209	633754	D	3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease	633209..633754	Shewanella loihica PV-4	4922887
YP_001092691.1	CDS	Shew_0560	NC_009092.1	635005	635460	D	KEGG: son:SO0595 hypothetical protein; hypothetical protein	635005..635460	Shewanella loihica PV-4	4923259
YP_001092692.1	CDS	Shew_0561	NC_009092.1	635897	637375	D	TIGRFAM: carbohydrate kinase, YjeF-related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: she:Shewmr4_0593 carbohydrate kinase, YjeF-related protein; carbohydrate kinase	635897..637375	Shewanella loihica PV-4	4921430
YP_001092693.1	CDS	Shew_0562	NC_009092.1	637476	637949	D	PFAM: protein of unknown function UPF0079; KEGG: she:Shewmr4_0594 protein of unknown function UPF0079; hypothetical protein	637476..637949	Shewanella loihica PV-4	4921201
YP_001092694.1	CDS	Shew_0563	NC_009092.1	637936	639255	D	PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase	637936..639255	Shewanella loihica PV-4	4922525
YP_001092695.1	CDS	mutL	NC_009092.1	639265	641160	D	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein	639265..641160	Shewanella loihica PV-4	4921930
YP_001092696.1	CDS	miaA	NC_009092.1	641153	642079	D	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase	641153..642079	Shewanella loihica PV-4	4922048
YP_001092697.1	CDS	Shew_0566	NC_009092.1	642172	642450	D	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: shm:Shewmr7_3432 RNA chaperone Hfq; RNA chaperone Hfq	642172..642450	Shewanella loihica PV-4	4922454
YP_001092698.1	CDS	Shew_0567	NC_009092.1	642471	643769	D	PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein	642471..643769	Shewanella loihica PV-4	4922568
YP_001092699.1	CDS	Shew_0568	NC_009092.1	643813	644955	D	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3430 HflK protein; HflK protein	643813..644955	Shewanella loihica PV-4	4922569
YP_001092700.1	CDS	Shew_0569	NC_009092.1	644958	645836	D	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3429 HflC protein; HflC protein	644958..645836	Shewanella loihica PV-4	4923177
YP_001092701.1	CDS	Shew_0570	NC_009092.1	646171	646761	D	TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: shm:Shewmr7_3428 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit	646171..646761	Shewanella loihica PV-4	4922122
YP_001092702.1	CDS	Shew_0571	NC_009092.1	646761	647975	D	PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: shm:Shewmr7_3427 cytochrome b/b6, N-terminal domain protein; cytochrome b/b6 domain-containing protein	646761..647975	Shewanella loihica PV-4	4922230
YP_001092703.1	CDS	Shew_0572	NC_009092.1	647975	648676	D	PFAM: cytochrome c1; KEGG: shm:Shewmr7_3426 cytochrome c1; cytochrome c1	647975..648676	Shewanella loihica PV-4	4921483
YP_001092704.1	CDS	sspA	NC_009092.1	648785	649414	D	transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A	648785..649414	Shewanella loihica PV-4	4921867
YP_001092705.1	CDS	Shew_0574	NC_009092.1	649416	649874	D	PFAM: Stringent starvation protein B; KEGG: shm:Shewmr7_3424 stringent starvation protein B; ClpXP protease specificity-enhancing factor	649416..649874	Shewanella loihica PV-4	4923319
YP_001092706.1	CDS	Shew_0575	NC_009092.1	650080	650667	D	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; glutamine amidotransferase of anthranilate synthase	650080..650667	Shewanella loihica PV-4	4922765
YP_001092707.1	CDS	Shew_0576	NC_009092.1	650838	653324	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: she:Shewmr4_0608 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase	650838..653324	Shewanella loihica PV-4	4922766
YP_001092708.1	CDS	Shew_0577	NC_009092.1	653435	654580	D	PFAM: HDOD; KEGG: son:SO0615 hypothetical protein; putative signal transduction protein	653435..654580	Shewanella loihica PV-4	4920640
YP_001092709.1	CDS	argD	NC_009092.1	655195	656412	D	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein	655195..656412	Shewanella loihica PV-4	4920604
YP_001092710.1	CDS	Shew_0579	NC_009092.1	656549	657568	D	PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase; arginine N-succinyltransferase	656549..657568	Shewanella loihica PV-4	4923841
YP_001092711.1	CDS	astD	NC_009092.1	657575	659038	D	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase	657575..659038	Shewanella loihica PV-4	4923603
YP_001092712.1	CDS	Shew_0581	NC_009092.1	659179	659979	D	KEGG: shm:Shewmr7_3416 hypothetical protein; hypothetical protein	659179..659979	Shewanella loihica PV-4	4922770
YP_001092713.1	CDS	Shew_0582	NC_009092.1	660077	661414	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(660077..661414)	Shewanella loihica PV-4	4921409
YP_001092714.1	CDS	Shew_0583	NC_009092.1	661411	662085	R	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; two component transcriptional regulator	complement(661411..662085)	Shewanella loihica PV-4	4920849
YP_001092715.1	CDS	Shew_0584	NC_009092.1	662196	662534	R	KEGG: shm:Shewmr7_3413 hypothetical protein; hypothetical protein	complement(662196..662534)	Shewanella loihica PV-4	4920850
YP_001092716.1	CDS	Shew_0585	NC_009092.1	662616	663251	R	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein	complement(662616..663251)	Shewanella loihica PV-4	4920946
YP_001092717.1	CDS	Shew_0586	NC_009092.1	663695	664474	D	KEGG: sfr:Sfri_3291 tetratricopeptide TPR_2 repeat protein; hypothetical protein	663695..664474	Shewanella loihica PV-4	4920568
YP_001092718.1	CDS	Shew_0587	NC_009092.1	664811	665698	R	PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase	complement(664811..665698)	Shewanella loihica PV-4	4920882
YP_001092719.1	CDS	Shew_0588	NC_009092.1	665782	666045	R	PFAM: protein of unknown function UPF0270; KEGG: sdn:Sden_3187 protein of unknown function UPF0270; hypothetical protein	complement(665782..666045)	Shewanella loihica PV-4	4920942
YP_001092720.1	CDS	Shew_0589	NC_009092.1	666048	667031	R	PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_0736 alpha/beta hydrolase fold; alpha/beta hydrolase	complement(666048..667031)	Shewanella loihica PV-4	4921662
YP_001092721.1	CDS	Shew_0590	NC_009092.1	667166	667672	D	KEGG: son:SO0881 hypothetical protein; hypothetical protein	667166..667672	Shewanella loihica PV-4	4923263
YP_001092722.1	CDS	Shew_0591	NC_009092.1	667823	669412	D	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase	667823..669412	Shewanella loihica PV-4	4920659
YP_001092723.1	CDS	Shew_0592	NC_009092.1	669469	669918	R	KEGG: sfr:Sfri_3285 hypothetical protein; hypothetical protein	complement(669469..669918)	Shewanella loihica PV-4	4920660
YP_001092724.1	CDS	Shew_0593	NC_009092.1	669986	671896	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3281 ABC transporter-related protein; ABC transporter-like protein	complement(669986..671896)	Shewanella loihica PV-4	4922144
YP_001092725.1	CDS	Shew_0594	NC_009092.1	672071	672271	D	KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein	672071..672271	Shewanella loihica PV-4	4923536
YP_001092726.1	CDS	Shew_0595	NC_009092.1	672337	672648	R	hypothetical protein	complement(672337..672648)	Shewanella loihica PV-4	4921000
YP_001092727.1	CDS	Shew_0596	NC_009092.1	672749	674671	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cps:CPS_1439 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer	complement(672749..674671)	Shewanella loihica PV-4	4923963
YP_001092728.1	CDS	Shew_0597	NC_009092.1	674928	676355	D	PFAM: major facilitator superfamily MFS_1; KEGG: bth:BT0821 putative permease; major facilitator superfamily transporter	674928..676355	Shewanella loihica PV-4	4920687
YP_001092729.1	CDS	Shew_0598	NC_009092.1	676581	677987	D	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA	676581..677987	Shewanella loihica PV-4	4921019
YP_001092730.1	CDS	Shew_0599	NC_009092.1	678532	679308	D	KEGG: btk:BT9727_0331 hypothetical protein; hypothetical protein	678532..679308	Shewanella loihica PV-4	4921533
YP_001092731.1	CDS	Shew_0600	NC_009092.1	679374	679688	D	hypothetical protein	679374..679688	Shewanella loihica PV-4	4921534
YP_001092732.1	CDS	Shew_0601	NC_009092.1	680283	680669	D	KEGG: net:Neut_1865 hypothetical protein; hypothetical protein	680283..680669	Shewanella loihica PV-4	4923934
YP_001092733.1	CDS	Shew_0602	NC_009092.1	681505	682158	D	PFAM: Methyltransferase type 12; KEGG: hch:HCH_01556 SAM-dependent methyltransferase; type 12 methyltransferase	681505..682158	Shewanella loihica PV-4	4923839
YP_001092734.1	CDS	Shew_0603	NC_009092.1	682183	682602	R	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: she:Shewmr4_0739 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein	complement(682183..682602)	Shewanella loihica PV-4	4921358
YP_001092735.1	CDS	Shew_0604	NC_009092.1	682776	684251	R	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase	complement(682776..684251)	Shewanella loihica PV-4	4920972
YP_001092736.1	CDS	Shew_0605	NC_009092.1	684515	684850	D	KEGG: sfr:Sfri_0822 hypothetical protein; hypothetical protein	684515..684850	Shewanella loihica PV-4	4920770
YP_001092737.1	CDS	Shew_0606	NC_009092.1	684935	685876	R	PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_3442 polysulphide reductase, NrfD; polysulfide reductase NrfD	complement(684935..685876)	Shewanella loihica PV-4	4923274
YP_001092738.1	CDS	Shew_0607	NC_009092.1	685873	686445	R	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0508 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	complement(685873..686445)	Shewanella loihica PV-4	4922676
YP_001092739.1	CDS	Shew_0608	NC_009092.1	686458	688740	R	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_3444 twin-arginine translocation pathway signal; molybdopterin oxidoreductase	complement(686458..688740)	Shewanella loihica PV-4	4922677
YP_001092740.1	CDS	Shew_0609	NC_009092.1	689031	689630	R	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator; two component LuxR family transcriptional regulator	complement(689031..689630)	Shewanella loihica PV-4	4920694
YP_001092741.1	CDS	Shew_0610	NC_009092.1	689834	691714	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase	689834..691714	Shewanella loihica PV-4	4920872
YP_001092742.1	CDS	Shew_0611	NC_009092.1	692107	692814	D	hypothetical protein	692107..692814	Shewanella loihica PV-4	4920999
YP_001092743.1	CDS	Shew_0612	NC_009092.1	692873	693304	D	hypothetical protein	692873..693304	Shewanella loihica PV-4	4921170
YP_001092744.1	CDS	Shew_0613	NC_009092.1	693986	695749	D	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein	693986..695749	Shewanella loihica PV-4	4921433
YP_001092745.1	CDS	Shew_0614	NC_009092.1	695749	697524	D	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein	695749..697524	Shewanella loihica PV-4	4921492
YP_001092746.1	CDS	Shew_0615	NC_009092.1	697679	700858	R	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	complement(697679..700858)	Shewanella loihica PV-4	4922051
YP_001092747.1	CDS	Shew_0616	NC_009092.1	701190	701738	R	SMART: SH3 domain protein domain protein; KEGG: shm:Shewmr7_0851 SH3 domain protein domain protein; SH3 domain-containing protein	complement(701190..701738)	Shewanella loihica PV-4	4922052
YP_001092748.1	CDS	Shew_0617	NC_009092.1	701995	703263	R	PFAM: phosphate transporter; KEGG: sdn:Sden_0691 phosphate transporter; phosphate transporter	complement(701995..703263)	Shewanella loihica PV-4	4923266
YP_001092749.1	CDS	Shew_0618	NC_009092.1	703288	703968	R	PFAM: protein of unknown function DUF47; KEGG: sfr:Sfri_0565 protein of unknown function DUF47; hypothetical protein	complement(703288..703968)	Shewanella loihica PV-4	4922577
YP_001092750.1	CDS	Shew_0619	NC_009092.1	704222	705709	D	PFAM: adenylate cyclase; KEGG: she:Shewmr4_3118 adenylate cyclase; adenylate cyclase	704222..705709	Shewanella loihica PV-4	4923189
YP_001092751.1	CDS	Shew_0620	NC_009092.1	705768	706562	R	PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: sfr:Sfri_3269 ion transport 2 domain protein; ion transport 2 domain-containing protein	complement(705768..706562)	Shewanella loihica PV-4	4923606
YP_001092752.1	CDS	Shew_0621	NC_009092.1	706643	706975	R	KEGG: shm:Shewmr7_0856 hypothetical protein; hypothetical protein	complement(706643..706975)	Shewanella loihica PV-4	4923680
YP_001092753.1	CDS	Shew_0622	NC_009092.1	707036	707680	R	KEGG: son:SO3766 hypothetical protein; hypothetical protein	complement(707036..707680)	Shewanella loihica PV-4	4923730
YP_001092754.1	CDS	Shew_0623	NC_009092.1	707888	708574	R	PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA	complement(707888..708574)	Shewanella loihica PV-4	4923138
YP_001092755.1	CDS	Shew_0624	NC_009092.1	708645	709058	R	KEGG: shm:Shewmr7_0859 hypothetical protein; hypothetical protein	complement(708645..709058)	Shewanella loihica PV-4	4923139
YP_001092756.1	CDS	Shew_0625	NC_009092.1	709149	710876	R	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase	complement(709149..710876)	Shewanella loihica PV-4	4924250
YP_001092757.1	CDS	Shew_0626	NC_009092.1	710890	711789	R	KEGG: sfr:Sfri_3263 protein of unknown function DUF350; hypothetical protein	complement(710890..711789)	Shewanella loihica PV-4	4922579
YP_001092758.1	CDS	Shew_0627	NC_009092.1	711801	712757	R	KEGG: she:Shewmr4_3110 hypothetical protein; hypothetical protein	complement(711801..712757)	Shewanella loihica PV-4	4920555
YP_001092759.1	CDS	Shew_0628	NC_009092.1	713023	715893	D	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase	713023..715893	Shewanella loihica PV-4	4920773
YP_001092760.1	CDS	Shew_0629	NC_009092.1	715941	716714	D	SMART: extracellular solute-binding protein, family 3; KEGG: vvy:VV1499 hypothetical protein; extracellular solute-binding protein	715941..716714	Shewanella loihica PV-4	4920823
YP_001092761.1	CDS	Shew_0630	NC_009092.1	716717	717529	R	PFAM: conserved hypothetical protein 245; KEGG: vpa:VP1159 putative ABC transport system permease protein; hypothetical protein	complement(716717..717529)	Shewanella loihica PV-4	4921292
YP_001092762.1	CDS	Shew_0631	NC_009092.1	717533	718699	R	PFAM: AFG1-family ATPase; KEGG: shm:Shewmr7_0870 AFG1-family ATPase; AFG1 family ATPase	complement(717533..718699)	Shewanella loihica PV-4	4922096
YP_001092763.1	CDS	Shew_0632	NC_009092.1	718786	720231	R	PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_0594 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	complement(718786..720231)	Shewanella loihica PV-4	4922097
YP_001092764.1	CDS	Shew_0633	NC_009092.1	720299	721741	R	KEGG: sdn:Sden_2001 hypothetical protein; hypothetical protein	complement(720299..721741)	Shewanella loihica PV-4	4922369
YP_001092765.1	CDS	Shew_0634	NC_009092.1	721839	722240	R	KEGG: she:Shewmr4_3460 hypothetical protein; hypothetical protein	complement(721839..722240)	Shewanella loihica PV-4	4922595
YP_001092766.1	CDS	Shew_0635	NC_009092.1	722474	723169	R	hypothetical protein	complement(722474..723169)	Shewanella loihica PV-4	4922816
YP_001092767.1	CDS	Shew_0636	NC_009092.1	723307	723765	R	hypothetical protein	complement(723307..723765)	Shewanella loihica PV-4	4922685
YP_001092768.1	CDS	Shew_0637	NC_009092.1	723795	724472	R	KEGG: sfr:Sfri_0597 hypothetical protein; hypothetical protein	complement(723795..724472)	Shewanella loihica PV-4	4923208
YP_001092769.1	CDS	Shew_0638	NC_009092.1	724655	728878	R	PFAM: cell surface receptor IPT/TIG domain protein; KEGG: hwa:HQ3601A cell surface calcium-binding acidic-repeat protein; cell surface receptor IPT/TIG domain-containing protein	complement(724655..728878)	Shewanella loihica PV-4	4923646
YP_001092770.1	CDS	Shew_0639	NC_009092.1	728957	729604	R	KEGG: bxe:Bxe_B2925 hypothetical protein; hypothetical protein	complement(728957..729604)	Shewanella loihica PV-4	4923829
YP_001092771.1	CDS	Shew_0640	NC_009092.1	729637	730119	R	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2604 TPR repeat; hypothetical protein	complement(729637..730119)	Shewanella loihica PV-4	4923830
YP_001092772.1	CDS	Shew_0641	NC_009092.1	730107	730451	R	PFAM: protein of unknown function DUF192; KEGG: bba:Bd0471 putative secreted protein; hypothetical protein	complement(730107..730451)	Shewanella loihica PV-4	4923872
YP_001092773.1	CDS	Shew_0642	NC_009092.1	730453	731316	R	PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2923 putative type II secretion system protein F; type II secretion system protein	complement(730453..731316)	Shewanella loihica PV-4	4923785
YP_001092774.1	CDS	Shew_0643	NC_009092.1	731325	732176	R	PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2922 putative type II secretion system protein F; type II secretion system protein	complement(731325..732176)	Shewanella loihica PV-4	4924105
YP_001092775.1	CDS	Shew_0644	NC_009092.1	732169	733878	R	PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E; FHA domain-containing protein	complement(732169..733878)	Shewanella loihica PV-4	4924271
YP_001092776.1	CDS	Shew_0645	NC_009092.1	733888	735198	R	PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_B2920 putative type II and III secretion system outermembrane protein, secretin; type II and III secretion system protein	complement(733888..735198)	Shewanella loihica PV-4	4922979
YP_001092777.1	CDS	Shew_0646	NC_009092.1	735195	736091	R	PFAM: SAF domain; KEGG: bxe:Bxe_B2919 putative Flp pilus assembly CpaB; SAF domain-containing protein	complement(735195..736091)	Shewanella loihica PV-4	4920599
YP_001092778.1	CDS	Shew_0647	NC_009092.1	736106	736297	R	hypothetical protein	complement(736106..736297)	Shewanella loihica PV-4	4923648
YP_001092779.1	CDS	Shew_0648	NC_009092.1	736305	736976	R	KEGG: bxe:Bxe_B2917 hypothetical protein; hypothetical protein	complement(736305..736976)	Shewanella loihica PV-4	4923649
YP_001092780.1	CDS	Shew_0649	NC_009092.1	736981	737841	R	KEGG: bxe:Bxe_B2916 hypothetical protein; hypothetical protein	complement(736981..737841)	Shewanella loihica PV-4	4920591
YP_001092781.1	CDS	Shew_0650	NC_009092.1	737841	739199	R	KEGG: ilo:IL0909 uncharacterized secreted protein; hypothetical protein	complement(737841..739199)	Shewanella loihica PV-4	4921150
YP_001092782.1	CDS	Shew_0651	NC_009092.1	739274	739582	R	KEGG: ilo:IL0910 Flp/Fap pilin homolog; hypothetical protein	complement(739274..739582)	Shewanella loihica PV-4	4921420
YP_001092783.1	CDS	Shew_0652	NC_009092.1	739685	739960	R	KEGG: ilo:IL0910 Flp/Fap pilin homolog; hypothetical protein	complement(739685..739960)	Shewanella loihica PV-4	4921576
YP_001092784.1	CDS	Shew_0653	NC_009092.1	740084	740704	R	PFAM: regulatory protein, LuxR; KEGG: sfr:Sfri_0602 transcriptional regulator, LuxR family protein; LuxR family transcriptional regulator	complement(740084..740704)	Shewanella loihica PV-4	4922172
YP_001092785.1	CDS	Shew_0654	NC_009092.1	741108	742550	R	PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_3094 peptidase M16 domain protein; peptidase M16 domain-containing protein	complement(741108..742550)	Shewanella loihica PV-4	4922432
YP_001092786.1	CDS	Shew_0655	NC_009092.1	742547	743971	R	PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_3093 peptidase M16 domain protein; peptidase M16 domain-containing protein	complement(742547..743971)	Shewanella loihica PV-4	4922609
YP_001092787.1	CDS	Shew_0656	NC_009092.1	743996	745531	R	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator	complement(743996..745531)	Shewanella loihica PV-4	4922610
YP_001092788.1	CDS	Shew_0657	NC_009092.1	745706	747997	R	KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein	complement(745706..747997)	Shewanella loihica PV-4	4922956
YP_001092789.1	CDS	Shew_0658	NC_009092.1	748289	749215	R	TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: sfr:Sfri_3201 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase	complement(748289..749215)	Shewanella loihica PV-4	4923145
YP_001092790.1	CDS	Shew_0659	NC_009092.1	749321	750751	D	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	749321..750751	Shewanella loihica PV-4	4923482
YP_001092791.1	CDS	Shew_0660	NC_009092.1	750748	751584	D	KEGG: son:SO3744 hypothetical protein; hypothetical protein	750748..751584	Shewanella loihica PV-4	4923957
YP_001092792.1	CDS	Shew_0661	NC_009092.1	751655	751969	R	KEGG: sfr:Sfri_3497 hypothetical protein; hypothetical protein	complement(751655..751969)	Shewanella loihica PV-4	4922228
YP_001092793.1	CDS	Shew_0662	NC_009092.1	752204	753586	R	PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: abo:ABO_1327 pyridine nucleotide transhydrogenase, B subunit; NAD(P) transhydrogenase subunit beta	complement(752204..753586)	Shewanella loihica PV-4	4922361
YP_001092794.1	CDS	Shew_0663	NC_009092.1	753593	753868	R	KEGG: abo:ABO_1328 oxidoreductase; oxidoreductase	complement(753593..753868)	Shewanella loihica PV-4	4922566
YP_001092795.1	CDS	Shew_0664	NC_009092.1	753868	755037	R	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: abo:ABO_1329 pyridine nucleotide transhydrogenase A subunit; NAD(P) transhydrogenase subunit alpha	complement(753868..755037)	Shewanella loihica PV-4	4922567
YP_001092796.1	CDS	Shew_0665	NC_009092.1	755369	757153	D	TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) flavoprotein, alpha chain	755369..757153	Shewanella loihica PV-4	4923005
YP_001092797.1	CDS	Shew_0666	NC_009092.1	757231	758928	D	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta	757231..758928	Shewanella loihica PV-4	4922672
YP_001092798.1	CDS	Shew_0667	NC_009092.1	758921	759673	D	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase	758921..759673	Shewanella loihica PV-4	4923641
YP_001092799.1	CDS	Shew_0668	NC_009092.1	760155	761870	D	KEGG: son:SO3733 hypothetical protein; hypothetical protein	760155..761870	Shewanella loihica PV-4	4924093
YP_001092800.1	CDS	Shew_0669	NC_009092.1	761972	762502	R	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_2601 antioxidant, AhpC/Tsa family; redoxin domain-containing protein	complement(761972..762502)	Shewanella loihica PV-4	4922426
YP_001092801.1	CDS	Shew_0670	NC_009092.1	762619	764085	R	KEGG: she:Shewmr4_3075 hypothetical protein; hypothetical protein	complement(762619..764085)	Shewanella loihica PV-4	4923205
YP_001092802.1	CDS	Shew_0671	NC_009092.1	764130	765056	R	PFAM: phospholipase A1; KEGG: sdn:Sden_0955 phospholipase A1; phospholipase A(1)	complement(764130..765056)	Shewanella loihica PV-4	4923476
YP_001092803.1	CDS	Shew_0672	NC_009092.1	765289	766110	D	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0899 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase	765289..766110	Shewanella loihica PV-4	4923477
YP_001092804.1	CDS	Shew_0673	NC_009092.1	766119	766955	R	KEGG: shm:Shewmr7_0904 hypothetical protein; hypothetical protein	complement(766119..766955)	Shewanella loihica PV-4	4920829
YP_001092805.1	CDS	Shew_0674	NC_009092.1	767054	768220	R	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3067 major facilitator superfamily MFS_1; major facilitator superfamily transporter	complement(767054..768220)	Shewanella loihica PV-4	4920436
YP_001092806.1	CDS	Shew_0675	NC_009092.1	768423	769868	D	KEGG: sfr:Sfri_0810 hypothetical protein; hypothetical protein	768423..769868	Shewanella loihica PV-4	4921339
YP_001092807.1	CDS	Shew_0676	NC_009092.1	769906	771054	D	KEGG: sfr:Sfri_0811 putative lipoprotein; putative lipoprotein	769906..771054	Shewanella loihica PV-4	4921044
YP_001092808.1	CDS	Shew_0677	NC_009092.1	771168	772799	D	PFAM: protein of unknown function DUF1111; KEGG: sdn:Sden_0723 protein of unknown function DUF1111; hypothetical protein	771168..772799	Shewanella loihica PV-4	4922607
YP_001092809.1	CDS	Shew_0678	NC_009092.1	772995	773516	D	KEGG: shm:Shewmr7_0906 protoporphyrinogen oxidase; protoporphyrinogen oxidase	772995..773516	Shewanella loihica PV-4	4923908
YP_001092810.1	CDS	Shew_0679	NC_009092.1	773581	774105	D	KEGG: she:Shewmr4_3065 hypothetical protein; hypothetical protein	773581..774105	Shewanella loihica PV-4	4923712
YP_001092811.1	CDS	Shew_0680	NC_009092.1	774193	775065	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pfl:PFL_5747 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(774193..775065)	Shewanella loihica PV-4	4923713
YP_001092812.1	CDS	Shew_0681	NC_009092.1	775175	776254	D	KEGG: vch:VCA0877 hydrolase, putative; penicillin V acylase-like protein	775175..776254	Shewanella loihica PV-4	4921312
YP_001092813.1	CDS	Shew_0682	NC_009092.1	776330	777433	R	KEGG: vvu:VV20703 permease of the major facilitator superfamily; major facilitator superfamily permease	complement(776330..777433)	Shewanella loihica PV-4	4921432
YP_001092814.1	CDS	Shew_0683	NC_009092.1	777423	778487	R	PFAM: secretion protein HlyD family protein; KEGG: vvu:VV13195 multidrug resistance efflux pump; secretion protein HlyD family protein	complement(777423..778487)	Shewanella loihica PV-4	4923185
YP_001092815.1	CDS	Shew_0684	NC_009092.1	778885	779292	D	hypothetical protein	778885..779292	Shewanella loihica PV-4	4920949
YP_001092816.1	CDS	Shew_0685	NC_009092.1	779359	780066	D	KEGG: deh:cbdb_A1523 hypothetical membrane protein; hypothetical protein	779359..780066	Shewanella loihica PV-4	4921205
YP_001092817.1	CDS	Shew_0686	NC_009092.1	780155	780817	R	PFAM: DSBA oxidoreductase; KEGG: shm:Shewmr7_0909 DsbA oxidoreductase; DSBA oxidoreductase	complement(780155..780817)	Shewanella loihica PV-4	4922348
YP_001092818.1	CDS	Shew_0687	NC_009092.1	781002	781661	R	PFAM: heat shock protein DnaJ domain protein; KEGG: sdn:Sden_0724 heat shock protein DnaJ-like protein; heat shock protein DnaJ domain-containing protein	complement(781002..781661)	Shewanella loihica PV-4	4923335
YP_001092819.1	CDS	Shew_0688	NC_009092.1	781824	782477	R	catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase	complement(781824..782477)	Shewanella loihica PV-4	4923336
YP_001092820.1	CDS	Shew_0689	NC_009092.1	782796	783626	D	KEGG: son:SO1045 hypothetical protein; hypothetical protein	782796..783626	Shewanella loihica PV-4	4920852
YP_001092821.1	CDS	Shew_0690	NC_009092.1	783798	784871	D	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_0969 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase	783798..784871	Shewanella loihica PV-4	4921149
YP_001092822.1	CDS	Shew_0691	NC_009092.1	785061	786194	D	PFAM: protein of unknown function UPF0118; KEGG: ppr:PBPRA1562 hypothetical protein; hypothetical protein	785061..786194	Shewanella loihica PV-4	4920976
YP_001092823.1	CDS	Shew_0692	NC_009092.1	786199	787119	D	KEGG: shm:Shewmr7_1015 hypothetical protein; hypothetical protein	786199..787119	Shewanella loihica PV-4	4921271
YP_001092824.1	CDS	Shew_0693	NC_009092.1	787227	787514	D	hypothetical protein	787227..787514	Shewanella loihica PV-4	4921838
YP_001092825.1	CDS	Shew_0694	NC_009092.1	787511	788452	R	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_2587 membrane protein; hypothetical protein	complement(787511..788452)	Shewanella loihica PV-4	4922524
YP_001092826.1	CDS	Shew_0695	NC_009092.1	788634	788849	R	PFAM: protein of unknown function DUF331; KEGG: shm:Shewmr7_0498 protein of unknown function DUF331; hypothetical protein	complement(788634..788849)	Shewanella loihica PV-4	4922546
YP_001092827.1	CDS	Shew_0696	NC_009092.1	789076	789990	R	catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase	complement(789076..789990)	Shewanella loihica PV-4	4922547
YP_001092828.1	CDS	rihA	NC_009092.1	790034	791041	R	Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1	complement(790034..791041)	Shewanella loihica PV-4	4923542
YP_001092829.1	CDS	Shew_0698	NC_009092.1	791670	793052	D	PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1936 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC	791670..793052	Shewanella loihica PV-4	4923609
YP_001092830.1	CDS	Shew_0699	NC_009092.1	793188	794663	R	KEGG: shm:Shewmr7_3245 Na+/H+ antiporter; Na+/H+ antiporter	complement(793188..794663)	Shewanella loihica PV-4	4923880
YP_001092831.1	CDS	Shew_0700	NC_009092.1	794970	795830	R	PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: shm:Shewmr7_3276 pirin domain protein domain protein; pirin domain-containing protein	complement(794970..795830)	Shewanella loihica PV-4	4920775
YP_001092832.1	CDS	Shew_0701	NC_009092.1	796188	796769	D	KEGG: hch:HCH_04210 hypothetical protein; hypothetical protein	796188..796769	Shewanella loihica PV-4	4921623
YP_001092833.1	CDS	Shew_0702	NC_009092.1	796784	797866	D	PFAM: Rhomboid family protein; KEGG: jan:Jann_3255 rhomboid-like protein; rhomboid family protein	796784..797866	Shewanella loihica PV-4	4921832
YP_001092834.1	CDS	Shew_0703	NC_009092.1	798050	798412	D	PFAM: response regulator receiver; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver protein	798050..798412	Shewanella loihica PV-4	4922449
YP_001092835.1	CDS	Shew_0704	NC_009092.1	798599	799195	D	hypothetical protein	798599..799195	Shewanella loihica PV-4	4922450
YP_001092836.1	CDS	Shew_0705	NC_009092.1	799500	800441	D	hypothetical protein	799500..800441	Shewanella loihica PV-4	4923061
YP_001092837.1	CDS	Shew_0706	NC_009092.1	800542	801219	R	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO0510 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR	complement(800542..801219)	Shewanella loihica PV-4	4923441
YP_001092838.1	CDS	Shew_0707	NC_009092.1	801362	801841	R	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vpa:VPA0766 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein	complement(801362..801841)	Shewanella loihica PV-4	4923541
YP_001092839.1	CDS	Shew_0708	NC_009092.1	801959	802786	R	KEGG: shm:Shewmr7_2638 hypothetical protein; hypothetical protein	complement(801959..802786)	Shewanella loihica PV-4	4923811
YP_001092840.1	CDS	Shew_0709	NC_009092.1	803961	806231	D	KEGG: sfr:Sfri_3122 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI	803961..806231	Shewanella loihica PV-4	4922433
YP_001092841.1	CDS	metH	NC_009092.1	807370	811092	R	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase	complement(807370..811092)	Shewanella loihica PV-4	4921261
YP_001092842.1	CDS	Shew_0711	NC_009092.1	811422	812033	D	PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; phosphoglycerate mutase	811422..812033	Shewanella loihica PV-4	4922447
YP_001092843.1	CDS	Shew_0712	NC_009092.1	812368	813342	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_0840 ABC transporter-related protein; ABC transporter-like protein	812368..813342	Shewanella loihica PV-4	4922448
YP_001092844.1	CDS	Shew_0713	NC_009092.1	813329	814372	D	PFAM: transport system permease protein; KEGG: she:Shewmr4_0841 transport system permease protein; transport system permease	813329..814372	Shewanella loihica PV-4	4922605
YP_001092845.1	CDS	cobT	NC_009092.1	814495	815523	D	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	814495..815523	Shewanella loihica PV-4	4922612
YP_001092846.1	CDS	Shew_0715	NC_009092.1	815565	816332	D	TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sfr:Sfri_0877 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase	815565..816332	Shewanella loihica PV-4	4922800
YP_001092847.1	CDS	Shew_0716	NC_009092.1	816329	816877	D	PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobalbumin biosynthesis protein	816329..816877	Shewanella loihica PV-4	4923188
YP_001092848.1	CDS	Shew_0717	NC_009092.1	816890	818494	D	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase	816890..818494	Shewanella loihica PV-4	4922515
YP_001092849.1	CDS	Shew_0718	NC_009092.1	818509	819138	D	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase	818509..819138	Shewanella loihica PV-4	4921693
YP_001092850.1	CDS	Shew_0719	NC_009092.1	819519	820343	D	PFAM: periplasmic binding protein; KEGG: she:Shewmr4_0848 periplasmic binding protein; periplasmic binding protein	819519..820343	Shewanella loihica PV-4	4921966
YP_001092851.1	CDS	Shew_0720	NC_009092.1	820401	820787	D	KEGG: son:SO3708 hypothetical protein; hypothetical protein	820401..820787	Shewanella loihica PV-4	4921967
YP_001092852.1	CDS	Shew_0721	NC_009092.1	821137	822399	D	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sfr:Sfri_0897 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	821137..822399	Shewanella loihica PV-4	4921131
YP_001092853.1	CDS	Shew_0722	NC_009092.1	822411	822647	D	hypothetical protein	822411..822647	Shewanella loihica PV-4	4921208
YP_001092854.1	CDS	Shew_0723	NC_009092.1	822712	823434	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3159 ABC transporter-related protein; ABC transporter-like protein	822712..823434	Shewanella loihica PV-4	4920666
YP_001092855.1	CDS	Shew_0724	NC_009092.1	823446	824756	D	PFAM: protein of unknown function DUF214; KEGG: sfr:Sfri_0899 protein of unknown function DUF214; hypothetical protein	823446..824756	Shewanella loihica PV-4	4923215
YP_001092856.1	CDS	Shew_0725	NC_009092.1	824767	825963	D	PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2848 protein of unknown function DUF214; hypothetical protein	824767..825963	Shewanella loihica PV-4	4922780
YP_001092857.1	CDS	Shew_0726	NC_009092.1	826091	827575	D	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: shm:Shewmr7_3156 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator	826091..827575	Shewanella loihica PV-4	4921575
YP_001092858.1	CDS	Shew_0727	NC_009092.1	827575	828948	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3155 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	827575..828948	Shewanella loihica PV-4	4923290
YP_001092859.1	CDS	Shew_0728	NC_009092.1	829023	830051	R	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase	complement(829023..830051)	Shewanella loihica PV-4	4923291
YP_001092860.1	CDS	Shew_0729	NC_009092.1	830300	832000	D	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ppr:PBPRA1421 putative NADH oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase	830300..832000	Shewanella loihica PV-4	4920569
YP_001092861.1	CDS	Shew_0730	NC_009092.1	832089	832517	D	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ppr:PBPRA1422 conserved hypothetical protein; hypothetical protein	832089..832517	Shewanella loihica PV-4	4923135
YP_001092862.1	CDS	Shew_0731	NC_009092.1	832526	832996	D	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pat:Patl_2106 protein of unknown function DUF395, YeeE/YedE; hypothetical protein	832526..832996	Shewanella loihica PV-4	4924376
YP_001092863.1	CDS	Shew_0732	NC_009092.1	833279	834619	D	KEGG: pfo:Pfl_3508 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase	833279..834619	Shewanella loihica PV-4	4922977
YP_001092864.1	CDS	Shew_0733	NC_009092.1	834650	835405	R	KEGG: shm:Shewmr7_3361 hypothetical protein; hypothetical protein	complement(834650..835405)	Shewanella loihica PV-4	4920586
YP_001092865.1	CDS	Shew_0734	NC_009092.1	835643	836095	R	PFAM: Fe-S metabolism associated SufE; KEGG: sfr:Sfri_3182 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE	complement(835643..836095)	Shewanella loihica PV-4	4923782
YP_001092866.1	CDS	Shew_0735	NC_009092.1	836116	837327	R	TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase	complement(836116..837327)	Shewanella loihica PV-4	4921530
YP_001092867.1	CDS	Shew_0736	NC_009092.1	837432	838472	R	PFAM: aldo/keto reductase; KEGG: shm:Shewmr7_3273 aldo/keto reductase; aldo/keto reductase	complement(837432..838472)	Shewanella loihica PV-4	4921531
YP_001092868.1	CDS	Shew_0737	NC_009092.1	838596	839564	R	PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: shm:Shewmr7_3265 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator	complement(838596..839564)	Shewanella loihica PV-4	4920626
YP_001092869.1	CDS	Shew_0738	NC_009092.1	839701	840318	R	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase	complement(839701..840318)	Shewanella loihica PV-4	4924284
YP_001092870.1	CDS	Shew_0739	NC_009092.1	840729	842000	D	PFAM: aromatic amino acid permease; KEGG: shm:Shewmr7_3262 amino acid transporter, transmembrane; aromatic amino acid permease	840729..842000	Shewanella loihica PV-4	4924066
YP_001092871.1	CDS	Shew_0740	NC_009092.1	842057	843424	D	KEGG: ecp:ECP_1757 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1	842057..843424	Shewanella loihica PV-4	4924000
YP_001092872.1	CDS	Shew_0741	NC_009092.1	843511	843954	R	PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0762 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	complement(843511..843954)	Shewanella loihica PV-4	4924046
YP_001092873.1	CDS	Shew_0742	NC_009092.1	844096	844401	D	KEGG: son:SO0921 hypothetical protein; hypothetical protein	844096..844401	Shewanella loihica PV-4	4920594
YP_001092874.1	CDS	Shew_0743	NC_009092.1	844566	845867	D	PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3259 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter	844566..845867	Shewanella loihica PV-4	4920572
YP_001092875.1	CDS	Shew_0744	NC_009092.1	845971	846384	R	PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: shm:Shewmr7_3258 protein of unknown function DUF306, MetA and HslJ; hypothetical protein	complement(845971..846384)	Shewanella loihica PV-4	4920573
YP_001092876.1	CDS	Shew_0745	NC_009092.1	846568	846807	D	KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein	846568..846807	Shewanella loihica PV-4	4920588
YP_001092877.1	CDS	Shew_0746	NC_009092.1	846833	847777	R	PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_3256 GGDEF domain protein; diguanylate cyclase	complement(846833..847777)	Shewanella loihica PV-4	4920624
YP_001092878.1	CDS	Shew_0747	NC_009092.1	847984	848940	R	KEGG: shm:Shewmr7_3256 GGDEF domain protein; diguanylate cyclase	complement(847984..848940)	Shewanella loihica PV-4	4920629
YP_001092879.1	CDS	Shew_0748	NC_009092.1	849062	849622	D	KEGG: son:SO0926 acetyltransferase, GNAT family; acetyltransferase	849062..849622	Shewanella loihica PV-4	4920672
YP_001092880.1	CDS	Shew_0749	NC_009092.1	849694	850038	D	KEGG: sfr:Sfri_0644 hypothetical protein; hypothetical protein	849694..850038	Shewanella loihica PV-4	4920693
YP_001092881.1	CDS	Shew_0750	NC_009092.1	850101	850538	D	KEGG: sfr:Sfri_3020 hypothetical protein; hypothetical protein	850101..850538	Shewanella loihica PV-4	4920706
YP_001092882.1	CDS	Shew_0751	NC_009092.1	850608	851759	R	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase	complement(850608..851759)	Shewanella loihica PV-4	4920824
YP_001092883.1	CDS	Shew_0752	NC_009092.1	852283	854277	D	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase	852283..854277	Shewanella loihica PV-4	4920825
YP_001092884.1	CDS	Shew_0753	NC_009092.1	854411	855427	D	NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase	854411..855427	Shewanella loihica PV-4	4923604
YP_001092885.1	CDS	pgk	NC_009092.1	855530	856705	D	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase	855530..856705	Shewanella loihica PV-4	4923398
YP_001092886.1	CDS	Shew_0755	NC_009092.1	856859	857923	D	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase	856859..857923	Shewanella loihica PV-4	4922155
YP_001092887.1	CDS	Shew_0756	NC_009092.1	858135	858875	D	PFAM: protein of unknown function DUF481; KEGG: shm:Shewmr7_3246 protein of unknown function DUF481; hypothetical protein	858135..858875	Shewanella loihica PV-4	4924136
YP_001092888.1	CDS	Shew_0757	NC_009092.1	859122	859577	D	KEGG: she:Shewmr4_0779 response regulator receiver protein; putative transcriptional regulator CadC	859122..859577	Shewanella loihica PV-4	4923689
YP_001092889.1	CDS	Shew_0758	NC_009092.1	859766	860287	R	KEGG: shm:Shewmr7_3242 hypothetical protein; hypothetical protein	complement(859766..860287)	Shewanella loihica PV-4	4923483
YP_001092890.1	CDS	Shew_0759	NC_009092.1	860299	861120	R	KEGG: sfr:Sfri_3633 cytochrome c, putative; cytochrome c	complement(860299..861120)	Shewanella loihica PV-4	4923403
YP_001092891.1	CDS	Shew_0760	NC_009092.1	861579	862400	D	PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; response regulator receiver protein	861579..862400	Shewanella loihica PV-4	4923404
YP_001092892.1	CDS	Shew_0761	NC_009092.1	862393	862914	D	KEGG: shm:Shewmr7_3239 hypothetical protein; hypothetical protein	862393..862914	Shewanella loihica PV-4	4923085
YP_001092893.1	CDS	Shew_0762	NC_009092.1	862984	864405	D	KEGG: son:SO0942 hypothetical protein; hypothetical protein	862984..864405	Shewanella loihica PV-4	4922500
YP_001092894.1	CDS	Shew_0763	NC_009092.1	867403	869619	R	PFAM: PAS fold domain protein; SMART: PAS domain containing protein; KEGG: shm:Shewmr7_3237 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein	complement(867403..869619)	Shewanella loihica PV-4	4922434
YP_001092895.1	CDS	Shew_0764	NC_009092.1	869806	870408	R	PFAM: Radical SAM domain protein; KEGG: shm:Shewmr7_3236 radical SAM domain protein; radical SAM domain-containing protein	complement(869806..870408)	Shewanella loihica PV-4	4922095
YP_001092896.1	CDS	Shew_0765	NC_009092.1	870547	873696	R	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3235 acriflavin resistance protein; acriflavin resistance protein	complement(870547..873696)	Shewanella loihica PV-4	4921801
YP_001092897.1	CDS	Shew_0766	NC_009092.1	873696	874919	R	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_0789 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	complement(873696..874919)	Shewanella loihica PV-4	4921493
YP_001092898.1	CDS	Shew_0767	NC_009092.1	875149	876408	R	facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB	complement(875149..876408)	Shewanella loihica PV-4	4921264
YP_001092899.1	CDS	Shew_0768	NC_009092.1	876459	877190	R	PFAM: methyltransferase small; KEGG: she:Shewmr4_0793 methyltransferase small; methyltransferase small	complement(876459..877190)	Shewanella loihica PV-4	4921265
YP_001092900.1	CDS	Shew_0769	NC_009092.1	877699	879030	D	PFAM: branched-chain amino acid transport system II carrier protein; KEGG: sfr:Sfri_0662 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein	877699..879030	Shewanella loihica PV-4	4920878
YP_001092901.1	CDS	Shew_0770	NC_009092.1	879109	880020	D	TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: she:Shewmr4_0795 tyrosine recombinase XerD; tyrosine recombinase XerD	879109..880020	Shewanella loihica PV-4	4920855
YP_001092902.1	CDS	Shew_0771	NC_009092.1	880241	880966	D	KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC	880241..880966	Shewanella loihica PV-4	4920806
YP_001092903.1	CDS	Shew_0772	NC_009092.1	881086	882810	D	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: shm:Shewmr7_3226 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ	881086..882810	Shewanella loihica PV-4	4920676
YP_001092904.1	CDS	Shew_0773	NC_009092.1	882949	883938	R	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase	complement(882949..883938)	Shewanella loihica PV-4	4920597
YP_001092905.1	CDS	Shew_0774	NC_009092.1	884145	886397	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3372 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit	884145..886397	Shewanella loihica PV-4	4920817
YP_001092906.1	CDS	Shew_0775	NC_009092.1	886542	887099	R	PFAM: regulatory protein, TetR; KEGG: vpa:VPA1299 putative transcriptional regulator; TetR family transcriptional regulator	complement(886542..887099)	Shewanella loihica PV-4	4920702
YP_001092907.1	CDS	Shew_0776	NC_009092.1	887199	887735	D	PFAM: bifunctional deaminase-reductase domain protein; KEGG: vpa:VPA1300 hypothetical protein; deaminase-reductase domain-containing protein	887199..887735	Shewanella loihica PV-4	4920703
YP_001092908.1	CDS	Shew_0777	NC_009092.1	888003	888722	R	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3371 two component transcriptional regulator, winged helix family; two-component response regulator	complement(888003..888722)	Shewanella loihica PV-4	4920765
YP_001092909.1	CDS	Shew_0778	NC_009092.1	889300	889731	D	KEGG: shm:Shewmr7_3370 hypothetical protein; hypothetical protein	889300..889731	Shewanella loihica PV-4	4920863
YP_001092910.1	CDS	Shew_0779	NC_009092.1	890141	891499	D	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III	890141..891499	Shewanella loihica PV-4	4922352
YP_001092911.1	CDS	Shew_0780	NC_009092.1	891496	892602	D	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: shm:Shewmr7_3368 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase	891496..892602	Shewanella loihica PV-4	4923658
YP_001092912.1	CDS	Shew_0781	NC_009092.1	892722	896573	R	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sfr:Sfri_0513 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin	complement(892722..896573)	Shewanella loihica PV-4	4922353
YP_001092913.1	CDS	Shew_0782	NC_009092.1	896794	897255	R	transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC	complement(896794..897255)	Shewanella loihica PV-4	4923975
YP_001092914.1	CDS	Shew_0783	NC_009092.1	897390	898067	R	PFAM: pseudouridine synthase; KEGG: she:Shewmr4_3139 pseudouridylate synthase; pseudouridylate synthase	complement(897390..898067)	Shewanella loihica PV-4	4921979
YP_001092915.1	CDS	Shew_0784	NC_009092.1	898161	898448	R	KEGG: shm:Shewmr7_3212 hypothetical protein; hypothetical protein	complement(898161..898448)	Shewanella loihica PV-4	4921980
YP_001092916.1	CDS	Shew_0785	NC_009092.1	898474	899004	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0810 methyltransferase type 12; type 12 methyltransferase	complement(898474..899004)	Shewanella loihica PV-4	4920867
YP_001092917.1	CDS	Shew_0786	NC_009092.1	898979	899395	R	KEGG: she:Shewmr4_0809 hypothetical protein; hypothetical protein	complement(898979..899395)	Shewanella loihica PV-4	4920707
YP_001092918.1	CDS	Shew_0787	NC_009092.1	899614	900603	D	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3216 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase	899614..900603	Shewanella loihica PV-4	4920669
YP_001092919.1	CDS	Shew_0788	NC_009092.1	900718	901455	D	PFAM: dienelactone hydrolase; KEGG: she:Shewmr4_0806 dienelactone hydrolase; dienelactone hydrolase	900718..901455	Shewanella loihica PV-4	4921338
YP_001092920.1	CDS	Shew_0789	NC_009092.1	901545	902513	R	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: sfr:Sfri_0943 Mg2 transporter protein, CorA family protein; Mg2+ transporter protein, CorA family protein	complement(901545..902513)	Shewanella loihica PV-4	4922377
YP_001092921.1	CDS	Shew_0790	NC_009092.1	902530	903081	R	KEGG: shm:Shewmr7_3219 hypothetical protein; hypothetical protein	complement(902530..903081)	Shewanella loihica PV-4	4920936
YP_001092922.1	CDS	Shew_0791	NC_009092.1	903429	904172	D	PFAM: Spermine synthase; KEGG: shm:Shewmr7_3220 spermine synthase; spermine synthase	903429..904172	Shewanella loihica PV-4	4923958
YP_001092923.1	CDS	Shew_0792	NC_009092.1	904370	904939	D	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3222 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase	904370..904939	Shewanella loihica PV-4	4923959
YP_001092924.1	CDS	Shew_0793	NC_009092.1	905116	906681	D	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0800 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase	905116..906681	Shewanella loihica PV-4	4923856
YP_001092925.1	CDS	Shew_0794	NC_009092.1	906794	907978	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: spt:SPA1005 hypothetical protein; diguanylate cyclase	906794..907978	Shewanella loihica PV-4	4920708
YP_001092926.1	CDS	Shew_0795	NC_009092.1	908006	908410	R	KEGG: cps:CPS_4848 hypothetical protein; hypothetical protein	complement(908006..908410)	Shewanella loihica PV-4	4923971
YP_001092927.1	CDS	Shew_0796	NC_009092.1	908713	908910	R	KEGG: sdn:Sden_3162 hypothetical protein; hypothetical protein	complement(908713..908910)	Shewanella loihica PV-4	4920853
YP_001092928.1	CDS	Shew_0797	NC_009092.1	909014	910432	R	KEGG: shm:Shewmr7_3210 hypothetical protein; hypothetical protein	complement(909014..910432)	Shewanella loihica PV-4	4921313
YP_001092929.1	CDS	Shew_0798	NC_009092.1	910987	911424	R	hypothetical protein	complement(910987..911424)	Shewanella loihica PV-4	4923650
YP_001092930.1	CDS	Shew_0799	NC_009092.1	911729	912214	D	PFAM: regulatory protein, MarR; KEGG: sfr:Sfri_0578 transcriptional regulator, MarR family protein; MarR family transcriptional regulator	911729..912214	Shewanella loihica PV-4	4921001
YP_001092931.1	CDS	Shew_0800	NC_009092.1	912248	913489	D	PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_3207 FAD dependent oxidoreductase; FAD dependent oxidoreductase	912248..913489	Shewanella loihica PV-4	4921002
YP_001092932.1	CDS	rumB	NC_009092.1	913532	914671	D	RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase	913532..914671	Shewanella loihica PV-4	4920809
YP_001092933.1	CDS	Shew_0802	NC_009092.1	914820	916028	D	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sfr:Sfri_0580 chromate transporter, chromate ion transporter (CHR) family protein; chromate transporter	914820..916028	Shewanella loihica PV-4	4920668
YP_001092934.1	CDS	Shew_0803	NC_009092.1	916063	917301	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_0818 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(916063..917301)	Shewanella loihica PV-4	4924151
YP_001092935.1	CDS	Shew_0804	NC_009092.1	917298	918002	R	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3204 two component transcriptional regulator, winged helix family; two component transcriptional regulator	complement(917298..918002)	Shewanella loihica PV-4	4924028
YP_001092936.1	CDS	Shew_0805	NC_009092.1	917999	918394	R	KEGG: she:Shewmr4_0820 hypothetical protein; hypothetical protein	complement(917999..918394)	Shewanella loihica PV-4	4920776
YP_001092937.1	CDS	Shew_0806	NC_009092.1	918384	919229	R	PFAM: MltA-interacting MipA family protein; KEGG: shm:Shewmr7_3202 MltA-interacting MipA family protein; MltA-interacting MipA family protein	complement(918384..919229)	Shewanella loihica PV-4	4920670
YP_001092938.1	CDS	Shew_0807	NC_009092.1	919978	925095	D	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: shm:Shewmr7_3201 LPXTG-motif cell wall anchor domain; peptidase S8/S53 subtilisin kexin sedolisin	919978..925095	Shewanella loihica PV-4	4924277
YP_001092939.1	CDS	Shew_0808	NC_009092.1	925401	927065	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_0630 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	925401..927065	Shewanella loihica PV-4	4924278
YP_001092940.1	CDS	Shew_0809	NC_009092.1	927171	931403	R	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_0825 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha	complement(927171..931403)	Shewanella loihica PV-4	4923578
YP_001092941.1	CDS	Shew_0810	NC_009092.1	931669	932649	R	PFAM: pentapeptide repeat protein; Ion transport 2 domain protein,; KEGG: vvy:VV0782 putative potassium channel protein; ion transport 2 domain-containing protein	complement(931669..932649)	Shewanella loihica PV-4	4920598
YP_001092942.1	CDS	Shew_0811	NC_009092.1	933056	933937	D	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: shm:Shewmr7_3197 peptide chain release factor 2; peptide chain release factor 2	933056..933937	Shewanella loihica PV-4	4920647
YP_001092943.1	CDS	lysS	NC_009092.1	933950	935452	D	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase	933950..935452	Shewanella loihica PV-4	4920766
YP_001092944.1	CDS	Shew_0813	NC_009092.1	935718	938231	D	KEGG: shm:Shewmr7_1231 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	935718..938231	Shewanella loihica PV-4	4923726
YP_001092945.1	CDS	Shew_0814	NC_009092.1	938276	938824	R	PFAM: pseudouridine synthase; KEGG: cps:CPS_1154 RNA pseudouridine synthase family protein; pseudouridine synthase	complement(938276..938824)	Shewanella loihica PV-4	4921317
YP_001092946.1	CDS	Shew_0815	NC_009092.1	939182	939988	D	TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: hch:HCH_06984 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase	939182..939988	Shewanella loihica PV-4	4923653
YP_001092947.1	CDS	Shew_0816	NC_009092.1	940252	940788	D	KEGG: sdn:Sden_0648 hypothetical protein; hypothetical protein	940252..940788	Shewanella loihica PV-4	4923654
YP_001092948.1	CDS	Shew_0817	NC_009092.1	940800	941117	D	PFAM: Cupin 2, conserved barrel domain protein; KEGG: mbu:Mbur_1476 cupin family protein; cupin	940800..941117	Shewanella loihica PV-4	4922778
YP_001092949.1	CDS	Shew_0818	NC_009092.1	941285	943198	D	PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32; peptidase U32	941285..943198	Shewanella loihica PV-4	4921928
YP_001092950.1	CDS	Shew_0819	NC_009092.1	943239	943613	D	PFAM: protein of unknown function DUF1696; KEGG: shm:Shewmr7_0829 protein of unknown function DUF1696; hypothetical protein	943239..943613	Shewanella loihica PV-4	4921414
YP_001092951.1	CDS	Shew_0820	NC_009092.1	943663	944850	R	KEGG: she:Shewmr4_3134 hypothetical protein; hypothetical protein	complement(943663..944850)	Shewanella loihica PV-4	4920692
YP_001092952.1	CDS	Shew_0821	NC_009092.1	945007	945294	R	KEGG: xac:XAC3907 mitomycin resistance protein; mitomycin resistance protein	complement(945007..945294)	Shewanella loihica PV-4	4920663
YP_001092953.1	CDS	Shew_0822	NC_009092.1	945361	945954	R	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bte:BTH_II0577 hypothetical protein; lysine exporter protein LysE/YggA	complement(945361..945954)	Shewanella loihica PV-4	4923424
YP_001092954.1	CDS	Shew_0823	NC_009092.1	946201	947106	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_0776 transcriptional regulator, LysR family protein; LysR family transcriptional regulator	complement(946201..947106)	Shewanella loihica PV-4	4921435
YP_001092955.1	CDS	Shew_0824	NC_009092.1	947238	947879	D	KEGG: shm:Shewmr7_0612 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase	947238..947879	Shewanella loihica PV-4	4921436
YP_001092956.1	CDS	Shew_0825	NC_009092.1	948036	948695	R	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A	complement(948036..948695)	Shewanella loihica PV-4	4920574
YP_001092957.1	CDS	Shew_0826	NC_009092.1	949026	949949	D	PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein; hypothetical protein	949026..949949	Shewanella loihica PV-4	4920678
YP_001092958.1	CDS	Shew_0827	NC_009092.1	950060	950707	D	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase	950060..950707	Shewanella loihica PV-4	4920580
YP_001092959.1	CDS	Shew_0828	NC_009092.1	950712	951605	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(950712..951605)	Shewanella loihica PV-4	4920577
YP_001092960.1	CDS	Shew_0829	NC_009092.1	951706	952125	D	PFAM: LrgA family protein; KEGG: she:Shewmr4_3050 LrgA family protein; LrgA family protein	951706..952125	Shewanella loihica PV-4	4920595
YP_001092961.1	CDS	Shew_0830	NC_009092.1	952139	952828	D	PFAM: LrgB family protein; KEGG: she:Shewmr4_3049 LrgB family protein; LrgB family protein	952139..952828	Shewanella loihica PV-4	4920609
YP_001092962.1	CDS	Shew_0831	NC_009092.1	952869	953288	R	PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_0640 CBS domain containing membrane protein; hypothetical protein	complement(952869..953288)	Shewanella loihica PV-4	4920632
YP_001092963.1	CDS	Shew_0832	NC_009092.1	953647	955419	D	PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0641 twin-arginine translocation pathway signal; alkaline phosphatase	953647..955419	Shewanella loihica PV-4	4920633
YP_001092964.1	CDS	Shew_0833	NC_009092.1	955682	956248	D	KEGG: shm:Shewmr7_0642 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase	955682..956248	Shewanella loihica PV-4	4920767
YP_001092965.1	CDS	Shew_0834	NC_009092.1	956331	956543	R	hypothetical protein	complement(956331..956543)	Shewanella loihica PV-4	4920940
YP_001092966.1	CDS	Shew_0835	NC_009092.1	956689	959337	R	PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_3040 aminopeptidase N; peptidase M1, membrane alanine aminopeptidase	complement(956689..959337)	Shewanella loihica PV-4	4920851
YP_001092967.1	CDS	Shew_0836	NC_009092.1	959579	960172	R	TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: shm:Shewmr7_0935 hypothetical protein; membrane lipoprotein lipid attachment site	complement(959579..960172)	Shewanella loihica PV-4	4921316
YP_001092968.1	CDS	Shew_0837	NC_009092.1	960198	961607	R	PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1061 TPR domain protein; hypothetical protein	complement(960198..961607)	Shewanella loihica PV-4	4921128
YP_001092969.1	CDS	Shew_0838	NC_009092.1	961672	961884	R	PFAM: SlyX family protein; KEGG: sdn:Sden_2911 SlyX; SlyX family protein	complement(961672..961884)	Shewanella loihica PV-4	4922818
YP_001092970.1	CDS	Shew_0839	NC_009092.1	961898	962866	R	PFAM: WD-40 repeat protein; KEGG: shm:Shewmr7_0939 WD-40 repeat protein; WD-40 repeat-containing protein	complement(961898..962866)	Shewanella loihica PV-4	4922633
YP_001092971.1	CDS	Shew_0840	NC_009092.1	963046	963813	D	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_0940 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type	963046..963813	Shewanella loihica PV-4	4922634
YP_001092972.1	CDS	Shew_0841	NC_009092.1	964006	964380	D	PFAM: uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein	964006..964380	Shewanella loihica PV-4	4922855
YP_001092973.1	CDS	Shew_0842	NC_009092.1	964472	965101	R	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: shm:Shewmr7_3365 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator	complement(964472..965101)	Shewanella loihica PV-4	4922465
YP_001092974.1	CDS	Shew_0843	NC_009092.1	965163	966866	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_3364 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ	complement(965163..966866)	Shewanella loihica PV-4	4923372
YP_001092975.1	CDS	nrfA	NC_009092.1	967114	968514	D	catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552	967114..968514	Shewanella loihica PV-4	4923147
YP_001092976.1	CDS	Shew_0845	NC_009092.1	968589	969131	R	PFAM: isochorismatase hydrolase; KEGG: she:Shewmr4_3363 isochorismatase hydrolase; isochorismatase hydrolase	complement(968589..969131)	Shewanella loihica PV-4	4923687
YP_001092977.1	CDS	Shew_0846	NC_009092.1	969384	969722	D	PFAM: nitrogen regulatory protein P-II; KEGG: sfr:Sfri_0623 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II	969384..969722	Shewanella loihica PV-4	4923843
YP_001092978.1	CDS	Shew_0847	NC_009092.1	969735	970985	D	PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0592 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter	969735..970985	Shewanella loihica PV-4	4923656
YP_001092979.1	CDS	Shew_0848	NC_009092.1	971105	971431	D	KEGG: shm:Shewmr7_0593 hypothetical protein; hypothetical protein	971105..971431	Shewanella loihica PV-4	4923657
YP_001092980.1	CDS	Shew_0849	NC_009092.1	971524	972705	D	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_0594 tetratricopeptide TPR_2 repeat protein; hypothetical protein	971524..972705	Shewanella loihica PV-4	4921830
YP_001092981.1	CDS	Shew_0850	NC_009092.1	972890	973717	R	KEGG: sfr:Sfri_0627 ABC-type amino acid transport/signal transduction systems; hypothetical protein	complement(972890..973717)	Shewanella loihica PV-4	4922596
YP_001092982.1	CDS	Shew_0851	NC_009092.1	974065	975117	D	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase	974065..975117	Shewanella loihica PV-4	4923231
YP_001092983.1	CDS	Shew_0852	NC_009092.1	975242	975418	R	KEGG: shm:Shewmr7_0596 hypothetical protein; hypothetical protein	complement(975242..975418)	Shewanella loihica PV-4	4923673
YP_001092984.1	CDS	Shew_0853	NC_009092.1	975818	977593	D	PFAM: ABC transporter, transmembrane region; ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0597 ABC transporter-related protein; ABC transporter-like protein	975818..977593	Shewanella loihica PV-4	4923445
YP_001092985.1	CDS	Shew_0854	NC_009092.1	977669	977926	D	KEGG: shm:Shewmr7_0598 hypothetical protein; hypothetical protein	977669..977926	Shewanella loihica PV-4	4922367
YP_001092986.1	CDS	Shew_0855	NC_009092.1	977957	978166	R	KEGG: son:SO0752 hypothetical protein; hypothetical protein	complement(977957..978166)	Shewanella loihica PV-4	4920777
YP_001092987.1	CDS	Shew_0856	NC_009092.1	978280	978816	R	PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase	complement(978280..978816)	Shewanella loihica PV-4	4920778
YP_001092988.1	CDS	Shew_0857	NC_009092.1	978951	979550	D	KEGG: son:SO0748 hypothetical protein; hypothetical protein	978951..979550	Shewanella loihica PV-4	4923684
YP_001092989.1	CDS	Shew_0858	NC_009092.1	979680	980420	D	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit	979680..980420	Shewanella loihica PV-4	4920833
YP_001092990.1	CDS	Shew_0859	NC_009092.1	980431	981030	D	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: son:SO0746 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein	980431..981030	Shewanella loihica PV-4	4923750
YP_001092991.1	CDS	Shew_0860	NC_009092.1	981109	981579	R	KEGG: son:SO0745 hypothetical protein; hypothetical protein	complement(981109..981579)	Shewanella loihica PV-4	4920839
YP_001092992.1	CDS	Shew_0861	NC_009092.1	981749	982756	D	PFAM: extracellular solute-binding protein, family 1; KEGG: shm:Shewmr7_0606 extracellular solute-binding protein, family 1; extracellular solute-binding protein	981749..982756	Shewanella loihica PV-4	4920743
YP_001092993.1	CDS	Shew_0862	NC_009092.1	982914	984545	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	982914..984545	Shewanella loihica PV-4	4920705
YP_001092994.1	CDS	Shew_0863	NC_009092.1	984547	985575	D	PFAM: ABC transporter-related protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sfr:Sfri_0638 ABC transporter-related protein; ABC transporter-like protein	984547..985575	Shewanella loihica PV-4	4920652
YP_001092995.1	CDS	Shew_0864	NC_009092.1	985762	986706	D	TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein	985762..986706	Shewanella loihica PV-4	4920653
YP_001092996.1	CDS	Shew_0865	NC_009092.1	986821	987279	R	PFAM: Cupin 2, conserved barrel domain protein; KEGG: gvi:glr3306 hypothetical protein; cupin	complement(986821..987279)	Shewanella loihica PV-4	4920664
YP_001092997.1	CDS	Shew_0866	NC_009092.1	987477	987947	R	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor	complement(987477..987947)	Shewanella loihica PV-4	4920636
YP_001092998.1	CDS	Shew_0867	NC_009092.1	988255	989190	D	oxidizes malate to oxaloacetate; malate dehydrogenase	988255..989190	Shewanella loihica PV-4	4920635
YP_001092999.1	CDS	Shew_0868	NC_009092.1	989310	990281	R	PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase; trans-hexaprenyltranstransferase	complement(989310..990281)	Shewanella loihica PV-4	4920587
YP_001093000.1	CDS	rplU	NC_009092.1	990557	990868	D	PFAM: ribosomal protein L21; KEGG: sfr:Sfri_3089 ribosomal protein L21; 50S ribosomal protein L21	990557..990868	Shewanella loihica PV-4	4920562
YP_001093001.1	CDS	rpmA	NC_009092.1	990884	991138	D	involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27	990884..991138	Shewanella loihica PV-4	4924227
YP_001093002.1	CDS	obgE	NC_009092.1	991355	992518	D	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE	991355..992518	Shewanella loihica PV-4	4924228
YP_001093003.1	CDS	Shew_0872	NC_009092.1	992554	993315	D	PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein; hypothetical protein	992554..993315	Shewanella loihica PV-4	4924229
YP_001093004.1	CDS	Shew_0873	NC_009092.1	993312	993782	D	KEGG: son:SO3647 hypothetical protein; hypothetical protein	993312..993782	Shewanella loihica PV-4	4923693
YP_001093005.1	CDS	Shew_0874	NC_009092.1	993823	994305	D	PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase	993823..994305	Shewanella loihica PV-4	4924279
YP_001093006.1	CDS	Shew_0875	NC_009092.1	994392	994784	D	KEGG: sdn:Sden_2921 hypothetical protein; hypothetical protein	994392..994784	Shewanella loihica PV-4	4924140
YP_001093007.1	CDS	Shew_0876	NC_009092.1	994888	996912	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer	complement(994888..996912)	Shewanella loihica PV-4	4923610
YP_001093008.1	CDS	apaH	NC_009092.1	997017	997841	R	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase	complement(997017..997841)	Shewanella loihica PV-4	4924286
YP_001093009.1	CDS	apaG	NC_009092.1	997868	998248	R	protein associated with Co2+ and Mg2+ efflux; ApaG protein	complement(997868..998248)	Shewanella loihica PV-4	4923997
YP_001093010.1	CDS	ksgA	NC_009092.1	998300	999109	R	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase	complement(998300..999109)	Shewanella loihica PV-4	4920810
YP_001093011.1	CDS	pdxA	NC_009092.1	999112	1000110	R	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase	complement(999112..1000110)	Shewanella loihica PV-4	4920811
YP_001093012.1	CDS	Shew_0881	NC_009092.1	1000116	1001420	R	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	complement(1000116..1001420)	Shewanella loihica PV-4	4920578
YP_001093013.1	CDS	Shew_0882	NC_009092.1	1001547	1003868	R	PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: shm:Shewmr7_3112 organic solvent tolerance protein; organic solvent tolerance protein	complement(1001547..1003868)	Shewanella loihica PV-4	4922678
YP_001093014.1	CDS	Shew_0883	NC_009092.1	1004025	1005062	D	PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_3111 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase	1004025..1005062	Shewanella loihica PV-4	4920873
YP_001093015.1	CDS	Shew_0884	NC_009092.1	1005062	1005811	D	PFAM: Nucleotidyl transferase; KEGG: shm:Shewmr7_3110 nucleotidyl transferase; nucleotidyl transferase	1005062..1005811	Shewanella loihica PV-4	4920611
YP_001093016.1	CDS	djlA	NC_009092.1	1005808	1006584	D	functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein	1005808..1006584	Shewanella loihica PV-4	4922123
YP_001093017.1	CDS	Shew_0886	NC_009092.1	1006607	1007236	D	KEGG: she:Shewmr4_0912 hypothetical protein; hypothetical protein	1006607..1007236	Shewanella loihica PV-4	4923086
YP_001093018.1	CDS	Shew_0887	NC_009092.1	1007257	1008210	D	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3107 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase	1007257..1008210	Shewanella loihica PV-4	4920700
YP_001093019.1	CDS	Shew_0889	NC_009092.1	1009773	1010162	D	KEGG: shm:Shewmr7_3097 hypothetical protein; hypothetical protein	1009773..1010162	Shewanella loihica PV-4	4923260
YP_001093020.1	CDS	Shew_0890	NC_009092.1	1010164	1011300	D	PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3016 secretion protein HlyD family protein; secretion protein HlyD family protein	1010164..1011300	Shewanella loihica PV-4	4920744
YP_001093021.1	CDS	Shew_0891	NC_009092.1	1011415	1012728	R	KEGG: vch:VC1406 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor	complement(1011415..1012728)	Shewanella loihica PV-4	4921624
YP_001093022.1	CDS	Shew_0892	NC_009092.1	1013039	1014508	D	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3100 AAA ATPase, central domain protein; ATPase central domain-containing protein	1013039..1014508	Shewanella loihica PV-4	4923275
YP_001093023.1	CDS	Shew_0893	NC_009092.1	1014521	1015060	R	KEGG: she:Shewmr4_3009 hypothetical protein; hypothetical protein	complement(1014521..1015060)	Shewanella loihica PV-4	4920698
YP_001093024.1	CDS	Shew_0894	NC_009092.1	1015252	1015524	D	PFAM: protein of unknown function DUF1289; KEGG: she:Shewmr4_3008 protein of unknown function DUF1289; hypothetical protein	1015252..1015524	Shewanella loihica PV-4	4920615
YP_001093025.1	CDS	Shew_0895	NC_009092.1	1015603	1016886	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(1015603..1016886)	Shewanella loihica PV-4	4923826
YP_001093026.1	CDS	Shew_0896	NC_009092.1	1016897	1017610	R	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3087 two component transcriptional regulator, winged helix family; two component transcriptional regulator	complement(1016897..1017610)	Shewanella loihica PV-4	4923877
YP_001093027.1	CDS	Shew_0897	NC_009092.1	1017610	1018011	R	KEGG: son:SO3593 hypothetical protein; hypothetical protein	complement(1017610..1018011)	Shewanella loihica PV-4	4923878
YP_001093028.1	CDS	Shew_0898	NC_009092.1	1018026	1018961	R	PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein	complement(1018026..1018961)	Shewanella loihica PV-4	4923832
YP_001093029.1	CDS	Shew_0899	NC_009092.1	1019081	1019917	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_3019 regulatory protein, LysR; LysR family transcriptional regulator	complement(1019081..1019917)	Shewanella loihica PV-4	4920875
YP_001093030.1	CDS	Shew_0900	NC_009092.1	1020106	1021281	D	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sdn:Sden_3018 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein	1020106..1021281	Shewanella loihica PV-4	4920585
YP_001093031.1	CDS	Shew_0901	NC_009092.1	1021390	1023681	D	PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: sdn:Sden_3017 transketolase, central region; transketolase, central region	1021390..1023681	Shewanella loihica PV-4	4923391
YP_001093032.1	CDS	Shew_0902	NC_009092.1	1023678	1024772	D	KEGG: sdn:Sden_3016 (acyl-carrier-protein) S-malonyltransferase; (acyl-carrier-protein) S-malonyltransferase	1023678..1024772	Shewanella loihica PV-4	4920641
YP_001093033.1	CDS	Shew_0903	NC_009092.1	1024955	1025476	D	PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB0529 hypothetical acetyltransferase; N-acetyltransferase GCN5	1024955..1025476	Shewanella loihica PV-4	4921427
YP_001093034.1	CDS	Shew_0904	NC_009092.1	1026007	1026573	D	PFAM: GPR1/FUN34/yaaH family protein; KEGG: ppr:PBPRA2415 putative membrane protein; GPR1/FUN34/yaaH family protein	1026007..1026573	Shewanella loihica PV-4	4920827
YP_001093035.1	CDS	Shew_0905	NC_009092.1	1026570	1027754	R	PFAM: response regulator receiver; KEGG: cps:CPS_4695 response regulator; response regulator receiver protein	complement(1026570..1027754)	Shewanella loihica PV-4	4920828
YP_001093036.1	CDS	Shew_0906	NC_009092.1	1027751	1028089	R	PFAM: Hpt domain protein; KEGG: nmu:Nmul_A1556 multi-sensor hybrid histidine kinase; Hpt protein	complement(1027751..1028089)	Shewanella loihica PV-4	4923659
YP_001093037.1	CDS	Shew_0907	NC_009092.1	1028079	1030838	R	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator; PAS/PAC sensor hybrid histidine kinase	complement(1028079..1030838)	Shewanella loihica PV-4	4920774
YP_001093038.1	CDS	Shew_0908	NC_009092.1	1031000	1031674	R	PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sfr:Sfri_1135 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	complement(1031000..1031674)	Shewanella loihica PV-4	4921840
YP_001093039.1	CDS	Shew_0909	NC_009092.1	1031823	1032329	R	KEGG: shm:Shewmr7_3082 hypothetical protein; hypothetical protein	complement(1031823..1032329)	Shewanella loihica PV-4	4920789
YP_001093040.1	CDS	Shew_0910	NC_009092.1	1032482	1032799	D	KEGG: sdy:SDY_1697 hypothetical protein; hypothetical protein	1032482..1032799	Shewanella loihica PV-4	4924104
YP_001093041.1	CDS	Shew_0911	NC_009092.1	1033033	1033335	D	hypothetical protein	1033033..1033335	Shewanella loihica PV-4	4920786
YP_001093042.1	CDS	Shew_0912	NC_009092.1	1033341	1033589	D	hypothetical protein	1033341..1033589	Shewanella loihica PV-4	4920902
YP_001093043.1	CDS	Shew_0913	NC_009092.1	1033654	1034076	R	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_3081 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase	complement(1033654..1034076)	Shewanella loihica PV-4	4920903
YP_001093044.1	CDS	Shew_0914	NC_009092.1	1034216	1034821	R	PFAM: NADPH-dependent FMN reductase; KEGG: son:SO3585 azoreductase, putative; NADPH-dependent FMN reductase	complement(1034216..1034821)	Shewanella loihica PV-4	4923748
YP_001093045.1	CDS	Shew_0915	NC_009092.1	1034962	1035618	D	KEGG: she:Shewmr4_2998 putative transcriptional regulator; putative transcriptional regulator	1034962..1035618	Shewanella loihica PV-4	4920832
YP_001093046.1	CDS	Shew_0916	NC_009092.1	1035608	1036318	D	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_2876 pseudouridine synthase, Rsu; pseudouridine synthase	1035608..1036318	Shewanella loihica PV-4	4923006
YP_001093047.1	CDS	Shew_0917	NC_009092.1	1036479	1037444	D	PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator	1036479..1037444	Shewanella loihica PV-4	4924275
YP_001093048.1	CDS	Shew_0918	NC_009092.1	1037603	1039897	D	KEGG: sfr:Sfri_0913 decaheme cytochrome c; decaheme cytochrome c	1037603..1039897	Shewanella loihica PV-4	4923962
YP_001093049.1	CDS	Shew_0919	NC_009092.1	1040176	1042299	D	PFAM: EAL domain protein; phosphotransferase system, EIIC; KEGG: shm:Shewmr7_3254 diguanylate phosphodiesterase; diguanylate phosphodiesterase	1040176..1042299	Shewanella loihica PV-4	4923668
YP_001093050.1	CDS	Shew_0920	NC_009092.1	1042420	1043958	R	PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_2826 major facilitator superfamily MFS_1; major facilitator superfamily transporter	complement(1042420..1043958)	Shewanella loihica PV-4	4922044
YP_001093051.1	CDS	Shew_0921	NC_009092.1	1044259	1047228	R	KEGG: hch:HCH_03041 hypothetical protein; hypothetical protein	complement(1044259..1047228)	Shewanella loihica PV-4	4922045
YP_001093052.1	CDS	Shew_0922	NC_009092.1	1047740	1049458	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1643 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer	1047740..1049458	Shewanella loihica PV-4	4923214
YP_001093053.1	CDS	valS	NC_009092.1	1049573	1052452	R	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase	complement(1049573..1052452)	Shewanella loihica PV-4	4922037
YP_001093054.1	CDS	Shew_0924	NC_009092.1	1052477	1052938	R	PFAM: DNA polymerase III chi subunit, HolC; KEGG: shm:Shewmr7_1202 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC	complement(1052477..1052938)	Shewanella loihica PV-4	4921268
YP_001093055.1	CDS	Shew_0925	NC_009092.1	1053619	1055085	R	KEGG: msu:MS0989 hypothetical protein; hypothetical protein	complement(1053619..1055085)	Shewanella loihica PV-4	4923545
YP_001093056.1	CDS	Shew_0926	NC_009092.1	1055175	1055828	R	KEGG: hso:HS_1731 Haemophilus-specific protein, uncharacterized; hypothetical protein	complement(1055175..1055828)	Shewanella loihica PV-4	4920622
YP_001093057.1	CDS	Shew_0927	NC_009092.1	1057371	1059119	D	PFAM: Amidohydrolase 3; KEGG: mmc:Mmcs_3318 twin-arginine translocation pathway signal; amidohydrolase 3	1057371..1059119	Shewanella loihica PV-4	4920856
YP_001093058.1	CDS	Shew_0928	NC_009092.1	1059390	1060403	D	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein	1059390..1060403	Shewanella loihica PV-4	4921243
YP_001093059.1	CDS	Shew_0929	NC_009092.1	1061034	1064111	R	PFAM: Ig family protein; KEGG: shm:Shewmr7_0560 putative outer membrane adhesin like protein; Ig family protein	complement(1061034..1064111)	Shewanella loihica PV-4	4921244
YP_001093060.1	CDS	Shew_0930	NC_009092.1	1064505	1065080	R	PFAM: AMMECR1 domain protein; KEGG: mag:amb3706 predicted dioxygenase; AMMECR1 domain-containing protein	complement(1064505..1065080)	Shewanella loihica PV-4	4922359
YP_001093061.1	CDS	Shew_0931	NC_009092.1	1065058	1065858	R	PFAM: protein of unknown function DUF52; KEGG: hch:HCH_05946 predicted dioxygenase; hypothetical protein	complement(1065058..1065858)	Shewanella loihica PV-4	4920566
YP_001093062.1	CDS	Shew_0932	NC_009092.1	1065921	1067009	D	PFAM: Radical SAM domain protein; KEGG: hch:HCH_05222 pyruvate-formate lyase-activating enzyme; radical SAM domain-containing protein	1065921..1067009	Shewanella loihica PV-4	4920638
YP_001093063.1	CDS	Shew_0933	NC_009092.1	1067049	1067720	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dps:DP0496 hypothetical protein; type 11 methyltransferase	complement(1067049..1067720)	Shewanella loihica PV-4	4923373
YP_001093064.1	CDS	Shew_0934	NC_009092.1	1067836	1068750	R	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRA2309 hypothetical protein; hypothetical protein	complement(1067836..1068750)	Shewanella loihica PV-4	4920859
YP_001093065.1	CDS	Shew_0935	NC_009092.1	1069130	1072729	R	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: shm:Shewmr7_0825 protease-associated PA domain protein; peptidase S8/S53 subtilisin kexin sedolisin	complement(1069130..1072729)	Shewanella loihica PV-4	4920570
YP_001093066.1	CDS	Shew_0936	NC_009092.1	1072806	1076561	R	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO3800 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin	complement(1072806..1076561)	Shewanella loihica PV-4	4920607
YP_001093067.1	CDS	Shew_0937	NC_009092.1	1076743	1078833	R	PFAM: transcriptional regulator domain protein; KEGG: she:Shewmr4_2883 transcriptional regulator domain protein; transcriptional regulator CadC	complement(1076743..1078833)	Shewanella loihica PV-4	4920608
YP_001093068.1	CDS	Shew_0938	NC_009092.1	1079082	1079471	D	KEGG: sde:Sde_1353 TonB-dependent receptor; TonB-dependent receptor	1079082..1079471	Shewanella loihica PV-4	4920677
YP_001093069.1	CDS	Shew_0939	NC_009092.1	1079608	1081116	R	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase	complement(1079608..1081116)	Shewanella loihica PV-4	4924103
YP_001093070.1	CDS	Shew_0940	NC_009092.1	1081337	1082449	D	PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2826 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease	1081337..1082449	Shewanella loihica PV-4	4924272
YP_001093071.1	CDS	Shew_0941	NC_009092.1	1082446	1083504	D	PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2825 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease	1082446..1083504	Shewanella loihica PV-4	4924110
YP_001093072.1	CDS	Shew_0942	NC_009092.1	1083576	1084085	R	PFAM: RDD domain containing protein; KEGG: she:Shewmr4_2823 RDD domain containing protein; RDD domain-containing protein	complement(1083576..1084085)	Shewanella loihica PV-4	4920593
YP_001093073.1	CDS	Shew_0943	NC_009092.1	1084147	1084407	R	KEGG: she:Shewmr4_2822 hypothetical protein; hypothetical protein	complement(1084147..1084407)	Shewanella loihica PV-4	4923471
YP_001093074.1	CDS	Shew_0944	NC_009092.1	1084464	1084976	R	PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2903 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	complement(1084464..1084976)	Shewanella loihica PV-4	4923585
YP_001093075.1	CDS	Shew_0945	NC_009092.1	1085349	1085984	D	PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449; hypothetical protein	1085349..1085984	Shewanella loihica PV-4	4923586
YP_001093076.1	CDS	Shew_0946	NC_009092.1	1086039	1087826	D	PFAM: band 7 protein; KEGG: shm:Shewmr7_2899 band 7 protein; hypothetical protein	1086039..1087826	Shewanella loihica PV-4	4923557
YP_001093077.1	CDS	Shew_0947	NC_009092.1	1087950	1089449	R	PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: shm:Shewmr7_2902 carboxypeptidase Taq; carboxypeptidase Taq	complement(1087950..1089449)	Shewanella loihica PV-4	4924106
YP_001093078.1	CDS	Shew_0948	NC_009092.1	1089588	1090220	R	KEGG: son:SO1380 hypothetical protein; hypothetical protein	complement(1089588..1090220)	Shewanella loihica PV-4	4920886
YP_001093079.1	CDS	Shew_0949	NC_009092.1	1090458	1091126	R	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfr:Sfri_3069 redoxin domain protein; redoxin domain-containing protein	complement(1090458..1091126)	Shewanella loihica PV-4	4920901
YP_001093080.1	CDS	Shew_0950	NC_009092.1	1091279	1092577	R	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase	complement(1091279..1092577)	Shewanella loihica PV-4	4921463
YP_001093081.1	CDS	Shew_0951	NC_009092.1	1092897	1094096	D	PFAM: EAL domain protein; response regulator receiver; KEGG: pha:PSHAa0134 hypothetical protein; response regulator receiver modulated diguanylate phosphodiesterase	1092897..1094096	Shewanella loihica PV-4	4921310
YP_001093082.1	CDS	Shew_0952	NC_009092.1	1094196	1095983	R	PFAM: peptidase M24; KEGG: she:Shewmr4_2807 peptidase M24; peptidase M24	complement(1094196..1095983)	Shewanella loihica PV-4	4922026
YP_001093083.1	CDS	Shew_0953	NC_009092.1	1096450	1097688	D	PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3481 conserved hypothetical drug transport transmembrane protein; major facilitator superfamily transporter	1096450..1097688	Shewanella loihica PV-4	4922027
YP_001093084.1	CDS	Shew_0954	NC_009092.1	1097847	1098626	D	PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein	1097847..1098626	Shewanella loihica PV-4	4922126
YP_001093085.1	CDS	Shew_0955	NC_009092.1	1098944	1100182	D	PFAM: peptidase M24; KEGG: sfr:Sfri_3046 peptidase M24; peptidase M24	1098944..1100182	Shewanella loihica PV-4	4922366
YP_001093086.1	CDS	Shew_0956	NC_009092.1	1100395	1100868	R	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type	complement(1100395..1100868)	Shewanella loihica PV-4	4923063
YP_001093087.1	CDS	Shew_0957	NC_009092.1	1100955	1101491	R	PFAM: protein of unknown function DUF1294; KEGG: shm:Shewmr7_2883 protein of unknown function DUF1294; hypothetical protein	complement(1100955..1101491)	Shewanella loihica PV-4	4923269
YP_001093088.1	CDS	Shew_0958	NC_009092.1	1101533	1102990	R	KEGG: sfr:Sfri_0740 hypothetical protein; hypothetical protein	complement(1101533..1102990)	Shewanella loihica PV-4	4923390
YP_001093089.1	CDS	Shew_0959	NC_009092.1	1103138	1103614	R	KEGG: sdn:Sden_2841 hypothetical protein; hypothetical protein	complement(1103138..1103614)	Shewanella loihica PV-4	4923711
YP_001093090.1	CDS	Shew_0960	NC_009092.1	1103827	1104777	D	PFAM: protein of unknown function DUF368; KEGG: sdn:Sden_2840 protein of unknown function DUF368; hypothetical protein	1103827..1104777	Shewanella loihica PV-4	4923293
YP_001093091.1	CDS	Shew_0961	NC_009092.1	1105045	1105389	R	KEGG: shm:Shewmr7_1246 hypothetical protein; hypothetical protein	complement(1105045..1105389)	Shewanella loihica PV-4	4923294
YP_001093092.1	CDS	Shew_0962	NC_009092.1	1105515	1105685	D	KEGG: shm:Shewmr7_1247 hypothetical protein; hypothetical protein	1105515..1105685	Shewanella loihica PV-4	4920689
YP_001093093.1	CDS	Shew_0963	NC_009092.1	1105803	1106522	R	KEGG: she:Shewmr4_2930 hypothetical protein; hypothetical protein	complement(1105803..1106522)	Shewanella loihica PV-4	4920814
YP_001093094.1	CDS	Shew_0964	NC_009092.1	1106633	1106998	R	PFAM: protein of unknown function DUF861, cupin_3; KEGG: shm:Shewmr7_3011 protein of unknown function DUF861, cupin_3; hypothetical protein	complement(1106633..1106998)	Shewanella loihica PV-4	4921152
YP_001093095.1	CDS	Shew_0965	NC_009092.1	1107054	1108544	R	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase	complement(1107054..1108544)	Shewanella loihica PV-4	4921439
YP_001093096.1	CDS	Shew_0966	NC_009092.1	1108595	1109935	R	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase	complement(1108595..1109935)	Shewanella loihica PV-4	4921462
YP_001093097.1	CDS	Shew_0967	NC_009092.1	1110182	1111678	D	PFAM: aldehyde dehydrogenase; KEGG: sfr:Sfri_3021 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase	1110182..1111678	Shewanella loihica PV-4	4921642
YP_001093098.1	CDS	Shew_0968	NC_009092.1	1111913	1112767	D	PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_3006 3-mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase	1111913..1112767	Shewanella loihica PV-4	4922046
YP_001093099.1	CDS	Shew_0969	NC_009092.1	1112831	1114135	R	PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_2922 FAD dependent oxidoreductase; FAD dependent oxidoreductase	complement(1112831..1114135)	Shewanella loihica PV-4	4922047
YP_001093100.1	CDS	Shew_0970	NC_009092.1	1114319	1114867	D	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_3003 transcriptional regulator, XRE family with cupin sensor; XRE family transcriptional regulator	1114319..1114867	Shewanella loihica PV-4	4922413
YP_001093101.1	CDS	Shew_0971	NC_009092.1	1115311	1116072	D	PFAM: peptidase C26; KEGG: sfr:Sfri_3012 peptidase C26; peptidase C26	1115311..1116072	Shewanella loihica PV-4	4922523
YP_001093102.1	CDS	Shew_0972	NC_009092.1	1116079	1117428	D	PFAM: glutamine synthetase, catalytic region; KEGG: shm:Shewmr7_3001 glutamate--ammonia ligase; glutamate--ammonia ligase	1116079..1117428	Shewanella loihica PV-4	4923474
YP_001093103.1	CDS	Shew_0973	NC_009092.1	1117707	1118807	D	PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_2918 extracellular solute-binding protein, family 1; extracellular solute-binding protein	1117707..1118807	Shewanella loihica PV-4	4923520
YP_001093104.1	CDS	Shew_0974	NC_009092.1	1118906	1120042	D	KEGG: shm:Shewmr7_2999 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter-related protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase	1118906..1120042	Shewanella loihica PV-4	4924065
YP_001093105.1	CDS	Shew_0975	NC_009092.1	1120053	1120958	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2998 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	1120053..1120958	Shewanella loihica PV-4	4921926
YP_001093106.1	CDS	Shew_0976	NC_009092.1	1120955	1121782	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2997 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	1120955..1121782	Shewanella loihica PV-4	4920656
YP_001093107.1	CDS	Shew_0977	NC_009092.1	1121866	1123152	D	PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2996 FAD dependent oxidoreductase; FAD dependent oxidoreductase	1121866..1123152	Shewanella loihica PV-4	4920657
YP_001093108.1	CDS	Shew_0978	NC_009092.1	1123249	1124187	R	PFAM: band 7 protein; KEGG: ecp:ECP_2928 putative SPFH domain protein; hypothetical protein	complement(1123249..1124187)	Shewanella loihica PV-4	4921440
YP_001093109.1	CDS	Shew_0979	NC_009092.1	1124320	1126770	R	KEGG: sfr:Sfri_3384 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)	complement(1124320..1126770)	Shewanella loihica PV-4	4922034
YP_001093110.1	CDS	Shew_0980	NC_009092.1	1127012	1130527	D	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pat:Patl_2104 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase	1127012..1130527	Shewanella loihica PV-4	4922360
YP_001093111.1	CDS	Shew_0981	NC_009092.1	1130561	1131028	D	PFAM: response regulator receiver; KEGG: sdn:Sden_1684 GGDEF domain; response regulator receiver protein	1130561..1131028	Shewanella loihica PV-4	4922958
YP_001093112.1	CDS	Shew_0982	NC_009092.1	1131481	1133007	D	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vpa:VP1365 hypothetical protein; hypothetical protein	1131481..1133007	Shewanella loihica PV-4	4923552
YP_001093113.1	CDS	Shew_0983	NC_009092.1	1133264	1134601	D	PFAM: amidohydrolase; KEGG: mba:Mbar_A1663 hypothetical protein; amidohydrolase	1133264..1134601	Shewanella loihica PV-4	4924098
YP_001093114.1	CDS	Shew_0984	NC_009092.1	1134636	1135988	D	PFAM: beta-lactamase; KEGG: cps:CPS_2086 putative beta-lactamase; beta-lactamase	1134636..1135988	Shewanella loihica PV-4	4920812
YP_001093115.1	CDS	Shew_0985	NC_009092.1	1136261	1138042	D	PFAM: phospholipase D/Transphosphatidylase; KEGG: aci:ACIAD1881 putative phospholipase D protein; phospholipase D/transphosphatidylase	1136261..1138042	Shewanella loihica PV-4	4920813
YP_001093116.1	CDS	Shew_0986	NC_009092.1	1139244	1139588	D	KEGG: vpa:VP2266 hypothetical protein; hypothetical protein	1139244..1139588	Shewanella loihica PV-4	4921910
YP_001093117.1	CDS	Shew_0987	NC_009092.1	1140182	1141375	D	hypothetical protein	1140182..1141375	Shewanella loihica PV-4	4921907
YP_001093118.1	CDS	Shew_0988	NC_009092.1	1141764	1144076	R	KEGG: rme:Rmet_2827 putative TraY/DotA-like type IV secretion system protein; hypothetical protein	complement(1141764..1144076)	Shewanella loihica PV-4	4922548
YP_001093119.1	CDS	Shew_0989	NC_009092.1	1144881	1146173	D	PFAM: MobA/MobL protein; KEGG: atc:AGR_L_66 hypothetical protein; MobA/MobL protein	1144881..1146173	Shewanella loihica PV-4	4923532
YP_001093120.1	CDS	Shew_0990	NC_009092.1	1146194	1146673	D	hypothetical protein	1146194..1146673	Shewanella loihica PV-4	4923854
YP_001093121.1	CDS	Shew_0991	NC_009092.1	1147126	1147743	R	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: psb:Psyr_2668 helix-turn-helix, fis-type; resolvase domain-containing protein	complement(1147126..1147743)	Shewanella loihica PV-4	4921807
YP_001093122.1	CDS	Shew_0992	NC_009092.1	1147752	1148849	R	PFAM: BsuBIPstI restriction endonuclease domain protein; KEGG: ssn:SSO_1584 putative restriction endonuclease; BsuBIPstI restriction endonuclease domain-containing protein	complement(1147752..1148849)	Shewanella loihica PV-4	4922394
YP_001093123.1	CDS	Shew_0993	NC_009092.1	1148846	1150633	R	PFAM: Eco57I restriction endonuclease; KEGG: ssn:SSO_1583 putative methylase; Eco57I restriction endonuclease	complement(1148846..1150633)	Shewanella loihica PV-4	4922395
YP_001093124.1	CDS	Shew_0994	NC_009092.1	1150865	1151482	D	KEGG: ecs:pO157p27 KfrAs; KfrA protein	1150865..1151482	Shewanella loihica PV-4	4922267
YP_001093125.1	CDS	Shew_0995	NC_009092.1	1151992	1152966	D	PFAM: phage integrase family protein; KEGG: bxe:Bxe_A3110 putative phage integrase; phage integrase family protein	1151992..1152966	Shewanella loihica PV-4	4922763
YP_001093126.1	CDS	Shew_0996	NC_009092.1	1153477	1155327	R	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: she:Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD; RpoD family RNA polymerase sigma factor	complement(1153477..1155327)	Shewanella loihica PV-4	4923261
YP_001093127.1	CDS	Shew_0997	NC_009092.1	1155444	1157249	R	KEGG: shm:Shewmr7_2989 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase	complement(1155444..1157249)	Shewanella loihica PV-4	4920631
YP_001093128.1	CDS	Shew_0998	NC_009092.1	1157269	1157712	R	PFAM: GatB/Yqey domain protein; KEGG: she:Shewmr4_2906 GatB/YqeY domain protein; GatB/Yqey domain-containing protein	complement(1157269..1157712)	Shewanella loihica PV-4	4921665
YP_001093129.1	CDS	rpsU	NC_009092.1	1157719	1157934	R	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21	complement(1157719..1157934)	Shewanella loihica PV-4	4924337
YP_001093130.1	CDS	Shew_1000	NC_009092.1	1158281	1159294	D	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease	1158281..1159294	Shewanella loihica PV-4	4923172
YP_001093131.1	CDS	Shew_1001	NC_009092.1	1159459	1160070	R	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY	complement(1159459..1160070)	Shewanella loihica PV-4	4923173
YP_001093132.1	CDS	Shew_1002	NC_009092.1	1160367	1160720	D	TIGRFAM: dihydroneopterin aldolase; KEGG: sdn:Sden_2828 dihydroneopterin aldolase; dihydroneopterin aldolase	1160367..1160720	Shewanella loihica PV-4	4920941
YP_001093133.1	CDS	Shew_1003	NC_009092.1	1160725	1161216	D	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: she:Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	1160725..1161216	Shewanella loihica PV-4	4920575
YP_001093134.1	CDS	Shew_1004	NC_009092.1	1161251	1162051	D	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase	1161251..1162051	Shewanella loihica PV-4	4920564
YP_001093135.1	CDS	Shew_1005	NC_009092.1	1162084	1162908	D	PFAM: Methyltransferase type 11; KEGG: she:Shewmr4_2899 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase	1162084..1162908	Shewanella loihica PV-4	4920623
YP_001093136.1	CDS	Shew_1006	NC_009092.1	1163002	1163943	D	PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: vpa:VPA1470 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein	1163002..1163943	Shewanella loihica PV-4	4920785
YP_001093137.1	CDS	Shew_1007	NC_009092.1	1164241	1164507	R	KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein	complement(1164241..1164507)	Shewanella loihica PV-4	4920790
YP_001093138.1	CDS	Shew_1008	NC_009092.1	1164717	1165958	R	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: shm:Shewmr7_2979 metal dependent phosphohydrolase; metal dependent phosphohydrolase	complement(1164717..1165958)	Shewanella loihica PV-4	4920857
YP_001093139.1	CDS	Shew_1009	NC_009092.1	1166146	1167909	D	PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2896 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein	1166146..1167909	Shewanella loihica PV-4	4920858
YP_001093140.1	CDS	Shew_1010	NC_009092.1	1167909	1169036	D	KEGG: she:Shewmr4_2895 general secretion pathway protein B; general secretion pathway protein B	1167909..1169036	Shewanella loihica PV-4	4920952
YP_001093141.1	CDS	Shew_1011	NC_009092.1	1169183	1170430	R	PFAM: Citrate transporter; KEGG: shm:Shewmr7_2976 citrate transporter; citrate transporter	complement(1169183..1170430)	Shewanella loihica PV-4	4921389
YP_001093142.1	CDS	Shew_1012	NC_009092.1	1171055	1172341	R	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase	complement(1171055..1172341)	Shewanella loihica PV-4	4921308
YP_001093143.1	CDS	Shew_1013	NC_009092.1	1172369	1173388	R	Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase	complement(1172369..1173388)	Shewanella loihica PV-4	4921834
YP_001093144.1	CDS	Shew_1014	NC_009092.1	1173869	1174375	D	PFAM: helix-turn-helix domain protein; KEGG: cvi:CV0910 hypothetical protein; XRE family transcriptional regulator	1173869..1174375	Shewanella loihica PV-4	4922597
YP_001093145.1	CDS	Shew_1015	NC_009092.1	1174427	1176136	R	PFAM: Cl- channel, voltage-gated family protein; KEGG: shm:Shewmr7_2973 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein	complement(1174427..1176136)	Shewanella loihica PV-4	4922466
YP_001093146.1	CDS	Shew_1016	NC_009092.1	1176212	1177129	D	KEGG: shm:Shewmr7_2972 hypothetical protein; hypothetical protein	1176212..1177129	Shewanella loihica PV-4	4923103
YP_001093147.1	CDS	Shew_1017	NC_009092.1	1177122	1177472	D	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA	1177122..1177472	Shewanella loihica PV-4	4923104
YP_001093148.1	CDS	Shew_1018	NC_009092.1	1177601	1178074	R	KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein	complement(1177601..1178074)	Shewanella loihica PV-4	4923025
YP_001093149.1	CDS	Shew_1019	NC_009092.1	1178135	1178521	R	KEGG: shm:Shewmr7_2969 hypothetical protein; hypothetical protein	complement(1178135..1178521)	Shewanella loihica PV-4	4923523
YP_001093150.1	CDS	anmK	NC_009092.1	1178664	1179773	R	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase	complement(1178664..1179773)	Shewanella loihica PV-4	4923588
YP_001093151.1	CDS	Shew_1021	NC_009092.1	1179811	1181286	R	PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: shm:Shewmr7_2963 peptidase M23B; peptidase M23B	complement(1179811..1181286)	Shewanella loihica PV-4	4923527
YP_001093152.1	CDS	Shew_1022	NC_009092.1	1181413	1182609	D	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase	1181413..1182609	Shewanella loihica PV-4	4924137
YP_001093153.1	CDS	Shew_1023	NC_009092.1	1182756	1183235	R	KEGG: shm:Shewmr7_2960 hypothetical protein; hypothetical protein	complement(1182756..1183235)	Shewanella loihica PV-4	4923756
YP_001093154.1	CDS	Shew_1024	NC_009092.1	1183237	1183857	R	PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_2959 protein of unknown function UPF0126; hypothetical protein	complement(1183237..1183857)	Shewanella loihica PV-4	4923547
YP_001093155.1	CDS	Shew_1025	NC_009092.1	1183854	1184243	R	KEGG: son:SO1320 hypothetical protein; hypothetical protein	complement(1183854..1184243)	Shewanella loihica PV-4	4923548
YP_001093156.1	CDS	Shew_1026	NC_009092.1	1184359	1185342	R	PFAM: cobalamin biosynthesis protein CbiB; KEGG: she:Shewmr4_2875 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB	complement(1184359..1185342)	Shewanella loihica PV-4	4923559
YP_001093157.1	CDS	Shew_1027	NC_009092.1	1185380	1186072	R	PFAM: purine and other phosphorylases, family 1; KEGG: she:Shewmr4_2874 methylthioadenosine nucleosidase; methylthioadenosine nucleosidase	complement(1185380..1186072)	Shewanella loihica PV-4	4923810
YP_001093158.1	CDS	Shew_1028	NC_009092.1	1186752	1187357	R	KEGG: mes:Meso_4150 hypothetical protein; hypothetical protein	complement(1186752..1187357)	Shewanella loihica PV-4	4920862
YP_001093159.1	CDS	Shew_1029	NC_009092.1	1187357	1187809	R	KEGG: cyb:CYB_0385 hypothetical protein; hypothetical protein	complement(1187357..1187809)	Shewanella loihica PV-4	4920847
YP_001093160.1	CDS	Shew_1030	NC_009092.1	1187802	1188503	R	hypothetical protein	complement(1187802..1188503)	Shewanella loihica PV-4	4920834
YP_001093161.1	CDS	gltD	NC_009092.1	1189496	1190905	R	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta	complement(1189496..1190905)	Shewanella loihica PV-4	4920781
YP_001093162.1	CDS	gltB	NC_009092.1	1190911	1195359	R	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha	complement(1190911..1195359)	Shewanella loihica PV-4	4920695
YP_001093163.1	CDS	Shew_1033	NC_009092.1	1195790	1196782	D	KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein	1195790..1196782	Shewanella loihica PV-4	4920696
YP_001093164.1	CDS	Shew_1034	NC_009092.1	1196956	1197321	D	PFAM: Hpt domain protein; KEGG: shm:Shewmr7_2951 Hpt protein; Hpt protein	1196956..1197321	Shewanella loihica PV-4	4920644
YP_001093165.1	CDS	Shew_1035	NC_009092.1	1197527	1198444	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family; LysR family transcriptional regulator	1197527..1198444	Shewanella loihica PV-4	4920630
YP_001093166.1	CDS	Shew_1036	NC_009092.1	1198447	1199466	R	KEGG: shm:Shewmr7_2949 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase	complement(1198447..1199466)	Shewanella loihica PV-4	4920605
YP_001093167.1	CDS	Shew_1037	NC_009092.1	1199866	1200537	R	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein	complement(1199866..1200537)	Shewanella loihica PV-4	4920592
YP_001093168.1	CDS	Shew_1038	NC_009092.1	1201232	1201756	D	hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase	1201232..1201756	Shewanella loihica PV-4	4920563
YP_001093169.1	CDS	Shew_1039	NC_009092.1	1201791	1204022	D	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: shm:Shewmr7_2946 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP	1201791..1204022	Shewanella loihica PV-4	4920620
YP_001093170.1	CDS	Shew_1040	NC_009092.1	1204127	1204921	D	PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2945 protein of unknown function DUF81; hypothetical protein	1204127..1204921	Shewanella loihica PV-4	4924230
YP_001093171.1	CDS	thyA	NC_009092.1	1205044	1205895	D	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase	1205044..1205895	Shewanella loihica PV-4	4924231
YP_001093172.1	CDS	nhaA	NC_009092.1	1206202	1207377	D	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter	1206202..1207377	Shewanella loihica PV-4	4924235
YP_001093173.1	CDS	Shew_1043	NC_009092.1	1207374	1207757	D	KEGG: son:SO1337 hypothetical protein; hypothetical protein	1207374..1207757	Shewanella loihica PV-4	4924270
YP_001093174.1	CDS	nhaR	NC_009092.1	1207778	1208686	D	Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR	1207778..1208686	Shewanella loihica PV-4	4924287
YP_001093175.1	CDS	Shew_1045	NC_009092.1	1208751	1209002	D	PFAM: protein of unknown function DUF339; KEGG: shm:Shewmr7_2939 protein of unknown function DUF339; hypothetical protein	1208751..1209002	Shewanella loihica PV-4	4924220
YP_001093176.1	CDS	Shew_1046	NC_009092.1	1208983	1209438	D	KEGG: she:Shewmr4_2856 hypothetical protein; hypothetical protein	1208983..1209438	Shewanella loihica PV-4	4921458
YP_001093177.1	CDS	Shew_1047	NC_009092.1	1209447	1211060	R	catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase	complement(1209447..1211060)	Shewanella loihica PV-4	4921428
YP_001093178.1	CDS	Shew_1048	NC_009092.1	1211260	1211838	D	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE	1211260..1211838	Shewanella loihica PV-4	4922529
YP_001093179.1	CDS	Shew_1049	NC_009092.1	1211878	1212480	D	PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: shm:Shewmr7_2935 anti sigma-E protein, RseA; anti sigma-E protein, RseA	1211878..1212480	Shewanella loihica PV-4	4922530
YP_001093180.1	CDS	Shew_1050	NC_009092.1	1212546	1213478	D	PFAM: MucB/RseB family protein; KEGG: she:Shewmr4_2852 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB	1212546..1213478	Shewanella loihica PV-4	4923399
YP_001093181.1	CDS	Shew_1051	NC_009092.1	1213486	1213962	D	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: sdn:Sden_2769 positive regulator of sigma(E), RseC/MucC; sigma E positive regulator RseC/MucC	1213486..1213962	Shewanella loihica PV-4	4920948
YP_001093182.1	CDS	Shew_1052	NC_009092.1	1214071	1215861	D	binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA	1214071..1215861	Shewanella loihica PV-4	4922314
YP_001093183.1	CDS	Shew_1053	NC_009092.1	1216015	1216932	D	KEGG: shm:Shewmr7_2931 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I	1216015..1216932	Shewanella loihica PV-4	4923026
YP_001093184.1	CDS	rnc	NC_009092.1	1216933	1217610	D	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III	1216933..1217610	Shewanella loihica PV-4	4921965
YP_001093185.1	CDS	era	NC_009092.1	1217607	1218602	D	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era	1217607..1218602	Shewanella loihica PV-4	4921107
YP_001093186.1	CDS	Shew_1056	NC_009092.1	1218707	1219402	D	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: shm:Shewmr7_2928 DNA repair protein RecO; DNA repair protein RecO	1218707..1219402	Shewanella loihica PV-4	4921108
YP_001093187.1	CDS	Shew_1057	NC_009092.1	1219531	1220268	D	involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase	1219531..1220268	Shewanella loihica PV-4	4921109
YP_001093188.1	CDS	acpS	NC_009092.1	1220313	1220714	D	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase	1220313..1220714	Shewanella loihica PV-4	4921532
YP_001093189.1	CDS	Shew_1059	NC_009092.1	1220981	1221523	D	PFAM: protein of unknown function DUF962; KEGG: sfr:Sfri_2924 protein of unknown function DUF962; hypothetical protein	1220981..1221523	Shewanella loihica PV-4	4921833
YP_001093190.1	CDS	Shew_1060	NC_009092.1	1221590	1222873	R	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sfr:Sfri_2923 protein of unknown function DUF21; hypothetical protein	complement(1221590..1222873)	Shewanella loihica PV-4	4922049
YP_001093191.1	CDS	Shew_1061	NC_009092.1	1223020	1223808	R	PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_2922 cytochrome c assembly protein; cytochrome c assembly protein	complement(1223020..1223808)	Shewanella loihica PV-4	4924360
YP_001093192.1	CDS	Shew_1062	NC_009092.1	1224101	1225474	D	with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein	1224101..1225474	Shewanella loihica PV-4	4922416
YP_001093193.1	CDS	rpsP	NC_009092.1	1225680	1225931	D	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16	1225680..1225931	Shewanella loihica PV-4	4922775
YP_001093194.1	CDS	rimM	NC_009092.1	1225952	1226482	D	Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM	1225952..1226482	Shewanella loihica PV-4	4923884
YP_001093195.1	CDS	trmD	NC_009092.1	1226498	1227244	D	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase	1226498..1227244	Shewanella loihica PV-4	4923885
YP_001093196.1	CDS	rplS	NC_009092.1	1227279	1227629	D	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19	1227279..1227629	Shewanella loihica PV-4	4923679
YP_001093197.1	CDS	Shew_1067	NC_009092.1	1228034	1229125	D	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase	1228034..1229125	Shewanella loihica PV-4	4920576
YP_001093198.1	CDS	tyrA	NC_009092.1	1229125	1230279	D	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase	1229125..1230279	Shewanella loihica PV-4	4924379
YP_001093199.1	CDS	Shew_1069	NC_009092.1	1230817	1232481	D	catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase	1230817..1232481	Shewanella loihica PV-4	4924381
YP_001093200.1	CDS	Shew_1070	NC_009092.1	1232541	1233626	D	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sfr:Sfri_3608 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit	1232541..1233626	Shewanella loihica PV-4	4923446
YP_001093201.1	CDS	Shew_1071	NC_009092.1	1233877	1234212	D	KEGG: son:SO1365 hypothetical protein; hypothetical protein	1233877..1234212	Shewanella loihica PV-4	4920583
YP_001093202.1	CDS	Shew_1072	NC_009092.1	1234289	1236253	R	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: shm:Shewmr7_2910 chorismate mutase; chorismate mutase	complement(1234289..1236253)	Shewanella loihica PV-4	4923401
YP_001093203.1	CDS	Shew_1073	NC_009092.1	1237259	1237633	R	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1203 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA	complement(1237259..1237633)	Shewanella loihica PV-4	4923402
YP_001093204.1	CDS	Shew_1074	NC_009092.1	1237896	1238591	D	PFAM: cytochrome B561; KEGG: she:Shewmr4_1133 cytochrome b561; cytochrome B561	1237896..1238591	Shewanella loihica PV-4	4920865
YP_001093205.1	CDS	Shew_1075	NC_009092.1	1238761	1239222	R	PFAM: cytochrome c, class II; KEGG: sfr:Sfri_2910 cytochrome c, class II; cytochrome c, class II	complement(1238761..1239222)	Shewanella loihica PV-4	4920971
YP_001093206.1	CDS	Shew_1076	NC_009092.1	1239375	1239728	D	TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sdn:Sden_2743 Trp repressor; Trp operon repressor	1239375..1239728	Shewanella loihica PV-4	4920944
YP_001093207.1	CDS	Shew_1077	NC_009092.1	1239804	1240235	R	KEGG: shm:Shewmr7_1207 hypothetical protein; hypothetical protein	complement(1239804..1240235)	Shewanella loihica PV-4	4923749
YP_001093208.1	CDS	Shew_1078	NC_009092.1	1240366	1240980	R	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type	complement(1240366..1240980)	Shewanella loihica PV-4	4921043
YP_001093209.1	CDS	thrA	NC_009092.1	1241698	1244166	D	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I	1241698..1244166	Shewanella loihica PV-4	4923784
YP_001093210.1	CDS	Shew_1080	NC_009092.1	1244163	1245113	D	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase	1244163..1245113	Shewanella loihica PV-4	4924068
YP_001093211.1	CDS	Shew_1081	NC_009092.1	1245127	1246410	D	catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase	1245127..1246410	Shewanella loihica PV-4	4924069
YP_001093212.1	CDS	Shew_1082	NC_009092.1	1246769	1247065	D	KEGG: shm:Shewmr7_1212 hypothetical protein; hypothetical protein	1246769..1247065	Shewanella loihica PV-4	4923965
YP_001093213.1	CDS	Shew_1083	NC_009092.1	1247062	1247913	R	KEGG: spt:SPA0648 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2; apurinic endonuclease Apn1	complement(1247062..1247913)	Shewanella loihica PV-4	4922776
YP_001093214.1	CDS	Shew_1084	NC_009092.1	1248034	1250070	D	KEGG: mag:amb3313 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase	1248034..1250070	Shewanella loihica PV-4	4921038
YP_001093215.1	CDS	Shew_1085	NC_009092.1	1250067	1251161	D	PFAM: response regulator receiver; KEGG: dar:Daro_3172 response regulator receiver; response regulator receiver protein	1250067..1251161	Shewanella loihica PV-4	4922443
YP_001093216.1	CDS	Shew_1086	NC_009092.1	1251288	1251830	D	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sdn:Sden_2737 hemerythrin HHE cation binding region; hemerythrin HHE cation binding domain-containing protein	1251288..1251830	Shewanella loihica PV-4	4921692
YP_001093217.1	CDS	Shew_1087	NC_009092.1	1251895	1252086	R	KEGG: sfr:Sfri_2902 hypothetical protein; hypothetical protein	complement(1251895..1252086)	Shewanella loihica PV-4	4922681
YP_001093218.1	CDS	pgi	NC_009092.1	1252316	1253953	R	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase	complement(1252316..1253953)	Shewanella loihica PV-4	4923575
YP_001093219.1	CDS	Shew_1089	NC_009092.1	1253967	1254923	R	KEGG: sdn:Sden_2734 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B	complement(1253967..1254923)	Shewanella loihica PV-4	4923576
YP_001093220.1	CDS	Shew_1090	NC_009092.1	1255197	1256300	R	PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sfr:Sfri_2899 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	complement(1255197..1256300)	Shewanella loihica PV-4	4920779
YP_001093221.1	CDS	Shew_1091	NC_009092.1	1256548	1258914	R	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: shm:Shewmr7_3047 phosphoketolase; putative phosphoketolase	complement(1256548..1258914)	Shewanella loihica PV-4	4920600
YP_001093222.1	CDS	Shew_1092	NC_009092.1	1259341	1260819	D	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: dps:DP1274 probable sodium/alanine symporter; amino acid carrier protein	1259341..1260819	Shewanella loihica PV-4	4923060
YP_001093223.1	CDS	Shew_1093	NC_009092.1	1260947	1261723	D	PFAM: protein of unknown function DUF328; KEGG: ppr:PBPRA0561 hypothetical protein; hypothetical protein	1260947..1261723	Shewanella loihica PV-4	4923583
YP_001093224.1	CDS	Shew_1094	NC_009092.1	1261904	1263310	R	PFAM: peptidase M20; peptidase M28; KEGG: she:Shewmr4_2962 peptidase M28; peptidase M28	complement(1261904..1263310)	Shewanella loihica PV-4	4923964
YP_001093225.1	CDS	Shew_1095	NC_009092.1	1263446	1263742	D	PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_3043 transcriptional regulator, ArsR family; ArsR family transcriptional regulator	1263446..1263742	Shewanella loihica PV-4	4923727
YP_001093226.1	CDS	rpsT	NC_009092.1	1263964	1264230	R	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20	complement(1263964..1264230)	Shewanella loihica PV-4	4923464
YP_001093227.1	CDS	Shew_1097	NC_009092.1	1264478	1266037	D	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: she:Shewmr4_2959 integral membrane protein MviN; integral membrane protein MviN	1264478..1266037	Shewanella loihica PV-4	4923465
YP_001093228.1	CDS	Shew_1098	NC_009092.1	1266103	1267038	D	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: she:Shewmr4_2958 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF	1266103..1267038	Shewanella loihica PV-4	4923448
YP_001093229.1	CDS	ileS	NC_009092.1	1267071	1269893	D	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase	1267071..1269893	Shewanella loihica PV-4	4923352
YP_001093230.1	CDS	lspA	NC_009092.1	1269903	1270415	D	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase	1269903..1270415	Shewanella loihica PV-4	4923369
YP_001093231.1	CDS	Shew_1101	NC_009092.1	1270419	1270841	D	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_3037 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type	1270419..1270841	Shewanella loihica PV-4	4923004
YP_001093232.1	CDS	ispH	NC_009092.1	1270844	1271794	D	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1270844..1271794	Shewanella loihica PV-4	4922797
YP_001093233.1	CDS	Shew_1103	NC_009092.1	1272026	1272547	D	TIGRFAM: type IV pilus modification protein PilV; KEGG: shm:Shewmr7_3035 type IV pilus modification protein PilV; type IV pilus modification protein PilV	1272026..1272547	Shewanella loihica PV-4	4922429
YP_001093234.1	CDS	Shew_1104	NC_009092.1	1272548	1273534	D	KEGG: she:Shewmr4_2952 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein	1272548..1273534	Shewanella loihica PV-4	4922768
YP_001093235.1	CDS	Shew_1105	NC_009092.1	1273540	1273974	D	KEGG: she:Shewmr4_2951 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX	1273540..1273974	Shewanella loihica PV-4	4922769
YP_001093236.1	CDS	Shew_1106	NC_009092.1	1273979	1277527	D	KEGG: she:Shewmr4_2950 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein, putative	1273979..1277527	Shewanella loihica PV-4	4922452
YP_001093237.1	CDS	Shew_1107	NC_009092.1	1277531	1277923	D	KEGG: shm:Shewmr7_3031 methylation site containing protein; methylation site containing protein	1277531..1277923	Shewanella loihica PV-4	4924361
YP_001093238.1	CDS	Shew_1108	NC_009092.1	1278259	1278750	R	KEGG: she:Shewmr4_2947 methylation site containing protein; methylation site containing protein	complement(1278259..1278750)	Shewanella loihica PV-4	4924356
YP_001093239.1	CDS	Shew_1109	NC_009092.1	1278887	1279399	R	KEGG: son:SO3520 type IV pilus biogenesis protein, putative; type IV pilus biogenesis protein, putative	complement(1278887..1279399)	Shewanella loihica PV-4	4922145
YP_001093240.1	CDS	Shew_1110	NC_009092.1	1279650	1279988	D	PFAM: nitrogen regulatory protein P-II; KEGG: sdn:Sden_2711 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II	1279650..1279988	Shewanella loihica PV-4	4921464
YP_001093241.1	CDS	Shew_1111	NC_009092.1	1280073	1281092	R	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO3516 transcriptional regulator, LacI family; LacI family transcriptional regulator	complement(1280073..1281092)	Shewanella loihica PV-4	4921426
YP_001093242.1	CDS	Shew_1112	NC_009092.1	1281505	1284129	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor; TonB-dependent receptor	1281505..1284129	Shewanella loihica PV-4	4924322
YP_001093243.1	CDS	Shew_1113	NC_009092.1	1284252	1285778	D	PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase; tryptophan halogenase	1284252..1285778	Shewanella loihica PV-4	4924323
YP_001093244.1	CDS	Shew_1114	NC_009092.1	1285876	1286595	R	PFAM: SapC family protein; KEGG: pha:PSHAa1142 hypothetical protein; SapC family protein	complement(1285876..1286595)	Shewanella loihica PV-4	4921767
YP_001093245.1	CDS	Shew_1115	NC_009092.1	1287898	1290564	D	PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: she:Shewmr4_2936 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase	1287898..1290564	Shewanella loihica PV-4	4921270
YP_001093246.1	CDS	Shew_1116	NC_009092.1	1290876	1291775	D	PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: she:Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase	1290876..1291775	Shewanella loihica PV-4	4921169
YP_001093247.1	CDS	Shew_1117	NC_009092.1	1291843	1292973	D	KEGG: sdn:Sden_2704 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase	1291843..1292973	Shewanella loihica PV-4	4921047
YP_001093248.1	CDS	Shew_1118	NC_009092.1	1293141	1294304	D	KEGG: shm:Shewmr7_3014 hypothetical protein; hypothetical protein	1293141..1294304	Shewanella loihica PV-4	4920997
YP_001093249.1	CDS	Shew_1119	NC_009092.1	1294566	1295822	D	TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_3013 glucose/galactose transporter; glucose/galactose transporter	1294566..1295822	Shewanella loihica PV-4	4921037
YP_001093250.1	CDS	Shew_1120	NC_009092.1	1296554	1297108	D	PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561; cytochrome B561	1296554..1297108	Shewanella loihica PV-4	4923244
YP_001093251.1	CDS	Shew_1121	NC_009092.1	1297162	1297695	D	PFAM: YceI family protein; KEGG: sfr:Sfri_2875 YceI family protein; hypothetical protein	1297162..1297695	Shewanella loihica PV-4	4921227
YP_001093252.1	CDS	Shew_1122	NC_009092.1	1297772	1298050	R	PFAM: Fe(II) trafficking protein YggX; KEGG: sfr:Sfri_2874 Fe(II) trafficking protein YggX; hypothetical protein	complement(1297772..1298050)	Shewanella loihica PV-4	4924290
YP_001093253.1	CDS	Shew_1123	NC_009092.1	1298053	1299159	R	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: she:Shewmr4_1180 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase	complement(1298053..1299159)	Shewanella loihica PV-4	4921084
YP_001093254.1	CDS	trmB	NC_009092.1	1299395	1300111	D	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase	1299395..1300111	Shewanella loihica PV-4	4923842
YP_001093255.1	CDS	Shew_1125	NC_009092.1	1300142	1300465	D	PFAM: protein of unknown function DUF469; KEGG: sdn:Sden_2696 protein of unknown function DUF469; hypothetical protein	1300142..1300465	Shewanella loihica PV-4	4922119
YP_001093256.1	CDS	Shew_1126	NC_009092.1	1300465	1301379	D	catalyzes the formation of glutamate from glutamine; glutaminase	1300465..1301379	Shewanella loihica PV-4	4924329
YP_001093257.1	CDS	Shew_1127	NC_009092.1	1301679	1302509	D	KEGG: shm:Shewmr7_1255 hypothetical protein; hypothetical protein	1301679..1302509	Shewanella loihica PV-4	4921148
YP_001093258.1	CDS	Shew_1128	NC_009092.1	1302855	1303796	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1256 transcriptional regulator, LysR family; LysR family transcriptional regulator	1302855..1303796	Shewanella loihica PV-4	4921869
YP_001093259.1	CDS	Shew_1129	NC_009092.1	1304516	1305220	D	KEGG: vfi:VF1468 hypothetical protein; hypothetical protein	1304516..1305220	Shewanella loihica PV-4	4921870
YP_001093260.1	CDS	Shew_1130	NC_009092.1	1305355	1307196	R	PFAM: protein of unknown function DUF885; KEGG: shm:Shewmr7_1257 protein of unknown function DUF885; hypothetical protein	complement(1305355..1307196)	Shewanella loihica PV-4	4924116
YP_001093261.1	CDS	Shew_1131	NC_009092.1	1307332	1308471	R	KEGG: shm:Shewmr7_1258 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase	complement(1307332..1308471)	Shewanella loihica PV-4	4922053
YP_001093262.1	CDS	Shew_1132	NC_009092.1	1308471	1309142	R	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase	complement(1308471..1309142)	Shewanella loihica PV-4	4921491
YP_001093263.1	CDS	Shew_1133	NC_009092.1	1309212	1309646	R	KEGG: shm:Shewmr7_1260 hypothetical protein; hypothetical protein	complement(1309212..1309646)	Shewanella loihica PV-4	4923655
YP_001093264.1	CDS	Shew_1134	NC_009092.1	1309733	1310023	R	PFAM: protein of unknown function DUF167; KEGG: ppr:PBPRA3146 hypothetical protein; hypothetical protein	complement(1309733..1310023)	Shewanella loihica PV-4	4923685
YP_001093265.1	CDS	Shew_1135	NC_009092.1	1310024	1310572	R	PFAM: protein of unknown function YGGT; KEGG: sdn:Sden_2684 protein of unknown function YGGT; hypothetical protein	complement(1310024..1310572)	Shewanella loihica PV-4	4923642
YP_001093266.1	CDS	Shew_1136	NC_009092.1	1310633	1311451	R	KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase	complement(1310633..1311451)	Shewanella loihica PV-4	4923515
YP_001093267.1	CDS	Shew_1137	NC_009092.1	1311533	1312234	R	PFAM: alanine racemase domain protein; KEGG: sfr:Sfri_2860 protein of unknown function UPF0001; alanine racemase domain-containing protein	complement(1311533..1312234)	Shewanella loihica PV-4	4923516
YP_001093268.1	CDS	Shew_1138	NC_009092.1	1312270	1313307	D	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: sfr:Sfri_2859 twitching motility protein; twitching motility protein	1312270..1313307	Shewanella loihica PV-4	4923240
YP_001093269.1	CDS	Shew_1139	NC_009092.1	1313320	1314432	D	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: shm:Shewmr7_1266 twitching motility protein; twitching motility protein	1313320..1314432	Shewanella loihica PV-4	4923087
YP_001093270.1	CDS	Shew_1140	NC_009092.1	1314559	1315626	D	PFAM: ferrochelatase; KEGG: sfr:Sfri_2852 ferrochelatase; ferrochelatase	1314559..1315626	Shewanella loihica PV-4	4923041
YP_001093271.1	CDS	Shew_1141	NC_009092.1	1316043	1317056	R	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein	complement(1316043..1317056)	Shewanella loihica PV-4	4922799
YP_001093272.1	CDS	Shew_1142	NC_009092.1	1317630	1319018	D	PFAM: AAA-4 family protein; KEGG: tbd:Tbd_1077 predicted transcriptional regulator; putative transcriptional regulator	1317630..1319018	Shewanella loihica PV-4	4922617
YP_001093273.1	CDS	Shew_1143	NC_009092.1	1320077	1320496	R	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein	complement(1320077..1320496)	Shewanella loihica PV-4	4922519
YP_001093274.1	CDS	Shew_1144	NC_009092.1	1320518	1321075	R	PFAM: protein of unknown function DUF179; KEGG: shm:Shewmr7_1270 protein of unknown function DUF179; hypothetical protein	complement(1320518..1321075)	Shewanella loihica PV-4	4922423
YP_001093275.1	CDS	Shew_1145	NC_009092.1	1321092	1321421	R	involved in start site selection during the initiation of translation; translation initiation factor Sui1	complement(1321092..1321421)	Shewanella loihica PV-4	4922424
YP_001093276.1	CDS	Shew_1146	NC_009092.1	1321638	1321952	R	KEGG: she:Shewmr4_1201 hypothetical protein; hypothetical protein	complement(1321638..1321952)	Shewanella loihica PV-4	4922418
YP_001093277.1	CDS	Shew_1147	NC_009092.1	1322126	1322689	D	KEGG: son:SO3343 hypothetical protein; hypothetical protein	1322126..1322689	Shewanella loihica PV-4	4922249
YP_001093278.1	CDS	Shew_1148	NC_009092.1	1322950	1323399	D	KEGG: hch:HCH_04766 hypothetical protein; hypothetical protein	1322950..1323399	Shewanella loihica PV-4	4922042
YP_001093279.1	CDS	Shew_1149	NC_009092.1	1323548	1324423	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; LysR family transcriptional regulator	complement(1323548..1324423)	Shewanella loihica PV-4	4921831
YP_001093280.1	CDS	Shew_1150	NC_009092.1	1324509	1324931	D	PFAM: transmembrane pair domain protein; KEGG: vpa:VP1155 hypothetical protein; transmembrane pair domain-containing protein	1324509..1324931	Shewanella loihica PV-4	4921461
YP_001093281.1	CDS	Shew_1151	NC_009092.1	1325148	1325852	D	PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein	1325148..1325852	Shewanella loihica PV-4	4921319
YP_001093282.1	CDS	Shew_1152	NC_009092.1	1325882	1326706	D	PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_1276 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS	1325882..1326706	Shewanella loihica PV-4	4921087
YP_001093283.1	CDS	Shew_1154	NC_009092.1	1326958	1327611	R	PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_1274 protein of unknown function UPF0126; hypothetical protein	complement(1326958..1327611)	Shewanella loihica PV-4	4923245
YP_001093284.1	CDS	Shew_1155	NC_009092.1	1327929	1328936	D	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase; threonine aldolase	1327929..1328936	Shewanella loihica PV-4	4921482
YP_001093285.1	CDS	Shew_1156	NC_009092.1	1329016	1329849	R	KEGG: shm:Shewmr7_0585 hypothetical protein; hypothetical protein	complement(1329016..1329849)	Shewanella loihica PV-4	4922521
YP_001093286.1	CDS	Shew_1157	NC_009092.1	1329935	1331572	R	PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0584 alkaline phosphatase; alkaline phosphatase	complement(1329935..1331572)	Shewanella loihica PV-4	4921558
YP_001093287.1	CDS	Shew_1158	NC_009092.1	1331587	1333095	R	PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_0583 alkaline phosphatase; alkaline phosphatase	complement(1331587..1333095)	Shewanella loihica PV-4	4921827
YP_001093288.1	CDS	Shew_1159	NC_009092.1	1333367	1333735	D	PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2843 thioesterase superfamily protein; thioesterase superfamily protein	1333367..1333735	Shewanella loihica PV-4	4923353
YP_001093289.1	CDS	Shew_1160	NC_009092.1	1333920	1334126	R	KEGG: son:SO1487 hypothetical protein; hypothetical protein	complement(1333920..1334126)	Shewanella loihica PV-4	4920646
YP_001093290.1	CDS	Shew_1161	NC_009092.1	1334285	1335586	R	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stt:t1709 NADH dehydrogenase; NADH dehydrogenase	complement(1334285..1335586)	Shewanella loihica PV-4	4921489
YP_001093291.1	CDS	Shew_1162	NC_009092.1	1335899	1336273	R	KEGG: she:Shewmr4_2763 hypothetical protein; hypothetical protein	complement(1335899..1336273)	Shewanella loihica PV-4	4921490
YP_001093292.1	CDS	Shew_1163	NC_009092.1	1336740	1337897	D	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_1536 efflux transporter, MFP subunit, AcrA/E family; RND family efflux transporter MFP subunit	1336740..1337897	Shewanella loihica PV-4	4921860
YP_001093293.1	CDS	Shew_1164	NC_009092.1	1337910	1341032	D	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: vpa:VPA0471 putative multidrug efflux membrane fusion protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein	1337910..1341032	Shewanella loihica PV-4	4922441
YP_001093294.1	CDS	Shew_1165	NC_009092.1	1341110	1341319	R	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB1929 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein	complement(1341110..1341319)	Shewanella loihica PV-4	4924139
YP_001093295.1	CDS	Shew_1166	NC_009092.1	1342277	1343425	R	PFAM: iron-containing alcohol dehydrogenase; KEGG: shm:Shewmr7_2840 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase	complement(1342277..1343425)	Shewanella loihica PV-4	4923808
YP_001093296.1	CDS	Shew_1167	NC_009092.1	1343941	1346178	D	KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase	1343941..1346178	Shewanella loihica PV-4	4921040
YP_001093297.1	CDS	Shew_1168	NC_009092.1	1346226	1348523	D	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein	1346226..1348523	Shewanella loihica PV-4	4921318
YP_001093298.1	CDS	Shew_1169	NC_009092.1	1348514	1350715	D	KEGG: shm:Shewmr7_2835 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX	1348514..1350715	Shewanella loihica PV-4	4921416
YP_001093299.1	CDS	Shew_1170	NC_009092.1	1350712	1353222	D	KEGG: she:Shewmr4_2756 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase	1350712..1353222	Shewanella loihica PV-4	4921417
YP_001093300.1	CDS	glgC	NC_009092.1	1353301	1354575	D	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase	1353301..1354575	Shewanella loihica PV-4	4921412
YP_001093301.1	CDS	Shew_1172	NC_009092.1	1354568	1356217	D	PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase; starch synthase	1354568..1356217	Shewanella loihica PV-4	4921200
YP_001093302.1	CDS	Shew_1173	NC_009092.1	1356261	1356734	R	PFAM: protein of unknown function DUF88; KEGG: she:Shewmr4_1080 protein of unknown function DUF88; hypothetical protein	complement(1356261..1356734)	Shewanella loihica PV-4	4921510
YP_001093303.1	CDS	Shew_1174	NC_009092.1	1356928	1358523	D	PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_0890 sulfotransferase; sulfotransferase	1356928..1358523	Shewanella loihica PV-4	4921982
YP_001093304.1	CDS	Shew_1175	NC_009092.1	1358695	1359846	R	PFAM: SEC-C motif domain protein; Aspartyl/Asparaginyl beta-hydroxylase; Cupin 2, conserved barrel domain protein; KEGG: sfr:Sfri_0891 sec-C motif domain protein; SecC motif-containing protein	complement(1358695..1359846)	Shewanella loihica PV-4	4922124
YP_001093305.1	CDS	Shew_1176	NC_009092.1	1359863	1360942	R	PFAM: sulfotransferase; SEC-C motif domain protein; KEGG: sfr:Sfri_0892 sec-C motif domain protein; SecC motif-containing protein	complement(1359863..1360942)	Shewanella loihica PV-4	4922368
YP_001093306.1	CDS	Shew_1177	NC_009092.1	1361267	1362520	D	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_1150 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	1361267..1362520	Shewanella loihica PV-4	4922419
YP_001093307.1	CDS	Shew_1178	NC_009092.1	1362520	1365648	D	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1149 acriflavin resistance protein; acriflavin resistance protein	1362520..1365648	Shewanella loihica PV-4	4922420
YP_001093308.1	CDS	Shew_1179	NC_009092.1	1366677	1370291	D	KEGG: she:Shewmr4_1087 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein, putative	1366677..1370291	Shewanella loihica PV-4	4922594
YP_001093309.1	CDS	Shew_1180	NC_009092.1	1370373	1370684	D	KEGG: she:Shewmr4_1088 hypothetical protein; hypothetical protein	1370373..1370684	Shewanella loihica PV-4	4922481
YP_001093310.1	CDS	Shew_1181	NC_009092.1	1370809	1371939	R	PFAM: PepSY-associated TM helix domain protein; KEGG: cps:CPS_2723 putative iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein	complement(1370809..1371939)	Shewanella loihica PV-4	4922899
YP_001093311.1	CDS	Shew_1182	NC_009092.1	1372354	1373472	R	PFAM: metallophosphoesterase; KEGG: she:Shewmr4_1086 metallophosphoesterase; metallophosphoesterase	complement(1372354..1373472)	Shewanella loihica PV-4	4922885
YP_001093312.1	CDS	Shew_1183	NC_009092.1	1373686	1375350	R	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein	complement(1373686..1375350)	Shewanella loihica PV-4	4923581
YP_001093313.1	CDS	Shew_1184	NC_009092.1	1375662	1377287	D	KEGG: ade:Adeh_0489 hypothetical protein; hypothetical protein	1375662..1377287	Shewanella loihica PV-4	4923580
YP_001093314.1	CDS	glyA	NC_009092.1	1377630	1378883	D	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase	1377630..1378883	Shewanella loihica PV-4	4923651
YP_001093315.1	CDS	nrdR	NC_009092.1	1379008	1379481	D	PFAM: ATP-cone domain protein; KEGG: sfr:Sfri_1034 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR	1379008..1379481	Shewanella loihica PV-4	4923652
YP_001093316.1	CDS	Shew_1187	NC_009092.1	1379520	1380680	D	KEGG: she:Shewmr4_1096 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD	1379520..1380680	Shewanella loihica PV-4	4923298
YP_001093317.1	CDS	Shew_1188	NC_009092.1	1380687	1381352	D	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha	1380687..1381352	Shewanella loihica PV-4	4924142
YP_001093318.1	CDS	Shew_1189	NC_009092.1	1381435	1382538	D	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: sdn:Sden_1146 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase	1381435..1382538	Shewanella loihica PV-4	4920973
YP_001093319.1	CDS	ribH	NC_009092.1	1382662	1383138	D	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase	1382662..1383138	Shewanella loihica PV-4	4921559
YP_001093320.1	CDS	nusB	NC_009092.1	1383153	1383557	D	Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB	1383153..1383557	Shewanella loihica PV-4	4922150
YP_001093321.1	CDS	Shew_1192	NC_009092.1	1383674	1384645	D	KEGG: she:Shewmr4_1101 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase	1383674..1384645	Shewanella loihica PV-4	4922580
YP_001093322.1	CDS	Shew_1193	NC_009092.1	1384648	1385142	D	PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase	1384648..1385142	Shewanella loihica PV-4	4922936
YP_001093323.1	CDS	Shew_1194	NC_009092.1	1385352	1385789	D	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sde:Sde_3850 hypothetical protein; glutathione-dependent formaldehyde-activating protein	1385352..1385789	Shewanella loihica PV-4	4922937
YP_001093324.1	CDS	Shew_1195	NC_009092.1	1385881	1387086	R	KEGG: son:SO2460 hypothetical protein; hypothetical protein	complement(1385881..1387086)	Shewanella loihica PV-4	4923535
YP_001093325.1	CDS	Shew_1196	NC_009092.1	1387289	1388950	R	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein	complement(1387289..1388950)	Shewanella loihica PV-4	4921481
YP_001093326.1	CDS	Shew_1197	NC_009092.1	1389101	1390069	R	PFAM: Auxin Efflux Carrier; KEGG: shm:Shewmr7_1171 auxin efflux carrier; auxin efflux carrier	complement(1389101..1390069)	Shewanella loihica PV-4	4922453
YP_001093327.1	CDS	Shew_1198	NC_009092.1	1390167	1390361	R	KEGG: sfr:Sfri_1045 hypothetical protein; hypothetical protein	complement(1390167..1390361)	Shewanella loihica PV-4	4922375
YP_001093328.1	CDS	Shew_1199	NC_009092.1	1390365	1390967	R	PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein; hypothetical protein	complement(1390365..1390967)	Shewanella loihica PV-4	4924232
YP_001093329.1	CDS	Shew_1200	NC_009092.1	1390960	1393761	R	part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA	complement(1390960..1393761)	Shewanella loihica PV-4	4922232
YP_001093330.1	CDS	rumA	NC_009092.1	1393859	1395193	D	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase	1393859..1395193	Shewanella loihica PV-4	4922039
YP_001093331.1	CDS	Shew_1202	NC_009092.1	1395358	1397562	D	KEGG: shm:Shewmr7_1177 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA	1395358..1397562	Shewanella loihica PV-4	4922040
YP_001093332.1	CDS	mazG	NC_009092.1	1397665	1398462	D	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase	1397665..1398462	Shewanella loihica PV-4	4923082
YP_001093333.1	CDS	pyrG	NC_009092.1	1398573	1400210	D	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase	1398573..1400210	Shewanella loihica PV-4	4922154
YP_001093334.1	CDS	eno	NC_009092.1	1400342	1401637	D	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase	1400342..1401637	Shewanella loihica PV-4	4921836
YP_001093335.1	CDS	Shew_1206	NC_009092.1	1401737	1402039	D	PFAM: Septum formation initiator; KEGG: shm:Shewmr7_1187 septum formation initiator; septum formation initiator	1401737..1402039	Shewanella loihica PV-4	4923806
YP_001093336.1	CDS	ispD	NC_009092.1	1402081	1402809	D	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	1402081..1402809	Shewanella loihica PV-4	4921260
YP_001093337.1	CDS	ispF	NC_009092.1	1402813	1403298	D	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase	1402813..1403298	Shewanella loihica PV-4	4922444
YP_001093338.1	CDS	Shew_1209	NC_009092.1	1403308	1404375	D	PFAM: tRNA pseudouridine synthase D, TruD; KEGG: sfr:Sfri_1056 pseudouridylate synthase; pseudouridylate synthase	1403308..1404375	Shewanella loihica PV-4	4923154
YP_001093339.1	CDS	surE	NC_009092.1	1404368	1405117	D	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE	1404368..1405117	Shewanella loihica PV-4	4923155
YP_001093340.1	CDS	Shew_1211	NC_009092.1	1405099	1405749	D	KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase	1405099..1405749	Shewanella loihica PV-4	4923530
YP_001093341.1	CDS	Shew_1212	NC_009092.1	1405799	1406731	D	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: shm:Shewmr7_1193 peptidase M23B; peptidase M23B	1405799..1406731	Shewanella loihica PV-4	4922363
YP_001093342.1	CDS	Shew_1213	NC_009092.1	1406809	1407783	D	TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: sdn:Sden_1204 RNA polymerase sigma factor RpoS; RpoD family RNA polymerase sigma factor	1406809..1407783	Shewanella loihica PV-4	4921935
YP_001093343.1	CDS	Shew_1214	NC_009092.1	1408043	1410610	R	This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS	complement(1408043..1410610)	Shewanella loihica PV-4	4922773
YP_001093344.1	CDS	recA	NC_009092.1	1410941	1412002	D	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A	1410941..1412002	Shewanella loihica PV-4	4922682
YP_001093345.1	CDS	Shew_1216	NC_009092.1	1412082	1412534	D	PFAM: regulatory protein RecX; KEGG: shm:Shewmr7_1197 regulatory protein RecX; regulatory protein RecX	1412082..1412534	Shewanella loihica PV-4	4923264
YP_001093346.1	CDS	alaS	NC_009092.1	1412779	1415403	D	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase	1412779..1415403	Shewanella loihica PV-4	4922999
YP_001093347.1	CDS	Shew_1218	NC_009092.1	1415710	1415907	D	affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator	1415710..1415907	Shewanella loihica PV-4	4923000
YP_001093348.1	CDS	Shew_1219	NC_009092.1	1417286	1417534	D	TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: sfr:Sfri_1065 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma	1417286..1417534	Shewanella loihica PV-4	4922705
YP_001093349.1	CDS	Shew_1220	NC_009092.1	1417554	1419359	D	catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase	1417554..1419359	Shewanella loihica PV-4	4921314
YP_001093350.1	CDS	Shew_1221	NC_009092.1	1419368	1420501	D	KEGG: sfr:Sfri_1067 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta	1419368..1420501	Shewanella loihica PV-4	4921224
YP_001093351.1	CDS	Shew_1222	NC_009092.1	1420865	1421050	D	KEGG: vfi:VF1529 hypothetical protein; hypothetical protein	1420865..1421050	Shewanella loihica PV-4	4923442
YP_001093352.1	CDS	Shew_1223	NC_009092.1	1421080	1421265	R	KEGG: shm:Shewmr7_3066 hypothetical protein; hypothetical protein	complement(1421080..1421265)	Shewanella loihica PV-4	4921808
YP_001093353.1	CDS	Shew_1224	NC_009092.1	1421398	1422648	R	PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3065 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter	complement(1421398..1422648)	Shewanella loihica PV-4	4924342
YP_001093354.1	CDS	Shew_1225	NC_009092.1	1422926	1423348	D	KEGG: son:SO3561 hypothetical protein; hypothetical protein	1422926..1423348	Shewanella loihica PV-4	4924331
YP_001093355.1	CDS	Shew_1226	NC_009092.1	1423434	1426268	D	PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_2981 peptidase M16 domain protein; peptidase M16 domain-containing protein	1423434..1426268	Shewanella loihica PV-4	4924332
YP_001093356.1	CDS	Shew_1227	NC_009092.1	1426467	1428038	D	involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase	1426467..1428038	Shewanella loihica PV-4	4924320
YP_001093357.1	CDS	Shew_1228	NC_009092.1	1428041	1428481	D	KEGG: shm:Shewmr7_3061 hypothetical protein; hypothetical protein	1428041..1428481	Shewanella loihica PV-4	4922611
YP_001093358.1	CDS	Shew_1229	NC_009092.1	1428580	1429197	D	KEGG: shm:Shewmr7_3060 hypothetical protein; hypothetical protein	1428580..1429197	Shewanella loihica PV-4	4922437
YP_001093359.1	CDS	Shew_1230	NC_009092.1	1429520	1430029	D	KEGG: ppr:PBPRA3574 hypothetical phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit	1429520..1430029	Shewanella loihica PV-4	4921126
YP_001093360.1	CDS	Shew_1231	NC_009092.1	1430464	1431057	D	PFAM: sigma-70 region 2 domain protein; KEGG: she:Shewmr4_2972 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor	1430464..1431057	Shewanella loihica PV-4	4923905
YP_001093361.1	CDS	Shew_1232	NC_009092.1	1431057	1431824	D	KEGG: sfr:Sfri_1079 hypothetical protein; hypothetical protein	1431057..1431824	Shewanella loihica PV-4	4924350
YP_001093362.1	CDS	Shew_1233	NC_009092.1	1431875	1432366	R	KEGG: pat:Patl_1076 hypothetical protein; hypothetical protein	complement(1431875..1432366)	Shewanella loihica PV-4	4922012
YP_001093363.1	CDS	Shew_1234	NC_009092.1	1432466	1435780	D	PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: shm:Shewmr7_1214 peptidase S41; peptidase S41	1432466..1435780	Shewanella loihica PV-4	4922013
YP_001093364.1	CDS	Shew_1235	NC_009092.1	1435986	1436885	D	KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein	1435986..1436885	Shewanella loihica PV-4	4921413
YP_001093365.1	CDS	Shew_1236	NC_009092.1	1436953	1437471	R	PFAM: OsmC family protein; KEGG: sdn:Sden_1225 OsmC-like protein; OsmC family protein	complement(1436953..1437471)	Shewanella loihica PV-4	4922975
YP_001093366.1	CDS	Shew_1237	NC_009092.1	1437563	1437841	R	hypothetical protein	complement(1437563..1437841)	Shewanella loihica PV-4	4924147
YP_001093367.1	CDS	Shew_1238	NC_009092.1	1437952	1438314	R	KEGG: shm:Shewmr7_1217 hypothetical protein; hypothetical protein	complement(1437952..1438314)	Shewanella loihica PV-4	4924026
YP_001093368.1	CDS	Shew_1239	NC_009092.1	1438311	1440023	R	PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1218 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein	complement(1438311..1440023)	Shewanella loihica PV-4	4923553
YP_001093369.1	CDS	Shew_1240	NC_009092.1	1440028	1440336	R	KEGG: neu:NE1084 hypothetical protein; hypothetical protein	complement(1440028..1440336)	Shewanella loihica PV-4	4924368
YP_001093370.1	CDS	Shew_1241	NC_009092.1	1440748	1441104	D	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/ribosomal protein S30EA	1440748..1441104	Shewanella loihica PV-4	4921512
YP_001093371.1	CDS	Shew_1242	NC_009092.1	1441257	1441730	R	KEGG: sdn:Sden_2617 hypothetical protein; hypothetical protein	complement(1441257..1441730)	Shewanella loihica PV-4	4921513
YP_001093372.1	CDS	Shew_1243	NC_009092.1	1441813	1442898	R	KEGG: sdn:Sden_2616 peptidyl-Lys metalloendopeptidase; peptidyl-Lys metalloendopeptidase	complement(1441813..1442898)	Shewanella loihica PV-4	4921293
YP_001093373.1	CDS	Shew_1244	NC_009092.1	1443417	1443851	D	PFAM: OsmC family protein; KEGG: vfi:VFA0335 osmotically inducible protein C; OsmC family protein	1443417..1443851	Shewanella loihica PV-4	4923447
YP_001093374.1	CDS	Shew_1245	NC_009092.1	1443918	1444859	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cyb:CYB_1948 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(1443918..1444859)	Shewanella loihica PV-4	4923242
YP_001093375.1	CDS	Shew_1246	NC_009092.1	1444998	1445246	D	hypothetical protein	1444998..1445246	Shewanella loihica PV-4	4923478
YP_001093376.1	CDS	Shew_1247	NC_009092.1	1445248	1446180	D	PFAM: protein of unknown function DUF897; KEGG: ttj:TTHA0515 hypothetical protein; hypothetical protein	1445248..1446180	Shewanella loihica PV-4	4922635
YP_001093377.1	CDS	Shew_1248	NC_009092.1	1446190	1446672	D	KEGG: mmr:Mmar10_2567 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit	1446190..1446672	Shewanella loihica PV-4	4924285
YP_001093378.1	CDS	Shew_1249	NC_009092.1	1446672	1447769	D	KEGG: hch:HCH_04604 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit	1446672..1447769	Shewanella loihica PV-4	4923555
YP_001093379.1	CDS	Shew_1250	NC_009092.1	1448222	1448908	R	hypothetical protein	complement(1448222..1448908)	Shewanella loihica PV-4	4923556
YP_001093380.1	CDS	Shew_1251	NC_009092.1	1449024	1450490	D	hypothetical protein	1449024..1450490	Shewanella loihica PV-4	4924108
YP_001093381.1	CDS	Shew_1252	NC_009092.1	1450808	1451473	D	KEGG: vfi:VFA0515 transposase; transposase	1450808..1451473	Shewanella loihica PV-4	4924025
YP_001093382.1	CDS	Shew_1253	NC_009092.1	1451563	1452288	R	KEGG: son:SO1447 retinol acyltransferase domain protein; retinol acyltransferase domain-containing protein	complement(1451563..1452288)	Shewanella loihica PV-4	4924071
YP_001093383.1	CDS	Shew_1254	NC_009092.1	1452361	1452921	R	PFAM: phage integrase family protein; KEGG: she:Shewmr4_1694 phage integrase family protein; phage integrase family protein	complement(1452361..1452921)	Shewanella loihica PV-4	4924077
YP_001093384.1	CDS	Shew_1255	NC_009092.1	1453031	1453435	R	KEGG: shm:Shewmr7_1772 hypothetical protein; hypothetical protein	complement(1453031..1453435)	Shewanella loihica PV-4	4922654
YP_001093385.1	CDS	Shew_1256	NC_009092.1	1453515	1453877	R	KEGG: she:Shewmr4_1698 hypothetical protein; hypothetical protein	complement(1453515..1453877)	Shewanella loihica PV-4	4920467
YP_001093386.1	CDS	Shew_1257	NC_009092.1	1453953	1454426	R	PFAM: DNA repair protein RadC; KEGG: son:SO1455 DNA repair protein, RadC family; DNA repair protein RadC	complement(1453953..1454426)	Shewanella loihica PV-4	4923525
YP_001093387.1	CDS	Shew_1258	NC_009092.1	1454598	1454783	D	PFAM: Prophage CP4-57 regulatory; KEGG: ilo:IL0640 predicted transcriptional regulator; phage transcriptional regulator AlpA	1454598..1454783	Shewanella loihica PV-4	4923526
YP_001093388.1	CDS	Shew_1259	NC_009092.1	1455068	1455226	D	PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0810 predicted transcriptional regulator; phage transcriptional regulator AlpA	1455068..1455226	Shewanella loihica PV-4	4920561
YP_001093389.1	CDS	Shew_1260	NC_009092.1	1455597	1457756	D	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cgb:cg1028 putative restriction-modification system: methylase; DNA methylase N-4/N-6 domain-containing protein	1455597..1457756	Shewanella loihica PV-4	4920584
YP_001093390.1	CDS	Shew_1261	NC_009092.1	1457762	1460347	D	PFAM: type III restriction enzyme, res subunit; KEGG: ecj:JW0270 hypothetical protein; type III restriction enzyme, res subunit	1457762..1460347	Shewanella loihica PV-4	4920654
YP_001093391.1	CDS	Shew_1262	NC_009092.1	1460488	1460853	R	hypothetical protein	complement(1460488..1460853)	Shewanella loihica PV-4	4920699
YP_001093392.1	CDS	Shew_1263	NC_009092.1	1461001	1461984	D	KEGG: sty:HCM1.102 hypothetical protein; hypothetical protein	1461001..1461984	Shewanella loihica PV-4	4920747
YP_001093393.1	CDS	Shew_1264	NC_009092.1	1461981	1464017	D	PFAM: UvrD/REP helicase; KEGG: sty:HCM1.103 putative DNA helicase; UvrD/REP helicase	1461981..1464017	Shewanella loihica PV-4	4920571
YP_001093394.1	CDS	Shew_1265	NC_009092.1	1464090	1464632	R	hypothetical protein	complement(1464090..1464632)	Shewanella loihica PV-4	4920581
YP_001093395.1	CDS	Shew_1266	NC_009092.1	1464637	1465020	D	PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator	1464637..1465020	Shewanella loihica PV-4	4920582
YP_001093396.1	CDS	Shew_1267	NC_009092.1	1465559	1466788	R	PFAM: phage integrase family protein; KEGG: she:Shewmr4_2777 phage integrase family protein; phage integrase family protein	complement(1465559..1466788)	Shewanella loihica PV-4	4920880
YP_001093397.1	CDS	smpB	NC_009092.1	1467468	1467959	R	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein	complement(1467468..1467959)	Shewanella loihica PV-4	4922706
YP_001093398.1	CDS	Shew_1269	NC_009092.1	1468162	1468593	D	PFAM: cyclase/dehydrase; KEGG: shm:Shewmr7_2853 cyclase/dehydrase; cyclase/dehydrase	1468162..1468593	Shewanella loihica PV-4	4920520
YP_001093399.1	CDS	Shew_1270	NC_009092.1	1468622	1468954	D	PFAM: protein of unknown function UPF0125; KEGG: sfr:Sfri_1096 protein of unknown function UPF0125; hypothetical protein	1468622..1468954	Shewanella loihica PV-4	4920510
YP_001093400.1	CDS	Shew_1271	NC_009092.1	1469162	1469710	R	PFAM: SmpA/OmlA domain protein; KEGG: shm:Shewmr7_2851 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein	complement(1469162..1469710)	Shewanella loihica PV-4	4920443
YP_001093401.1	CDS	Shew_1272	NC_009092.1	1470059	1470868	D	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: she:Shewmr4_2772 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase	1470059..1470868	Shewanella loihica PV-4	4920437
YP_001093402.1	CDS	Shew_1273	NC_009092.1	1470952	1471173	D	KEGG: sfr:Sfri_1099 hypothetical protein; hypothetical protein	1470952..1471173	Shewanella loihica PV-4	4920501
YP_001093403.1	CDS	Shew_1274	NC_009092.1	1471188	1472969	D	KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase	1471188..1472969	Shewanella loihica PV-4	4920502
YP_001093404.1	CDS	Shew_1275	NC_009092.1	1474273	1475907	D	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase	1474273..1475907	Shewanella loihica PV-4	4920457
YP_001093405.1	CDS	Shew_1276	NC_009092.1	1475987	1477339	D	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: she:Shewmr4_2766 isocitrate lyase; isocitrate lyase	1475987..1477339	Shewanella loihica PV-4	4920493
YP_001093406.1	CDS	Shew_1277	NC_009092.1	1477688	1479136	D	PFAM: GAF domain protein; HDOD; KEGG: sdn:Sden_1247 hypothetical protein; putative signal transduction protein	1477688..1479136	Shewanella loihica PV-4	4920418
YP_001093407.1	CDS	Shew_1278	NC_009092.1	1479139	1479612	R	KEGG: shm:Shewmr7_1280 hypothetical protein; hypothetical protein	complement(1479139..1479612)	Shewanella loihica PV-4	4920552
YP_001093408.1	CDS	Shew_1279	NC_009092.1	1479636	1480460	R	PFAM: protein of unknown function DUF980; KEGG: sfr:Sfri_1105 protein of unknown function DUF980; hypothetical protein	complement(1479636..1480460)	Shewanella loihica PV-4	4920476
YP_001093409.1	CDS	Shew_1280	NC_009092.1	1480740	1481165	R	KEGG: she:Shewmr4_1213 transcriptional regulator, CopG family; CopG family transcriptional regulator	complement(1480740..1481165)	Shewanella loihica PV-4	4920474
YP_001093410.1	CDS	Shew_1281	NC_009092.1	1481125	1481868	R	KEGG: shm:Shewmr7_1285 hypothetical protein; hypothetical protein	complement(1481125..1481868)	Shewanella loihica PV-4	4920470
YP_001093411.1	CDS	Shew_1282	NC_009092.1	1482486	1482710	D	KEGG: shm:Shewmr7_1287 hypothetical protein; hypothetical protein	1482486..1482710	Shewanella loihica PV-4	4920471
YP_001093412.1	CDS	Shew_1283	NC_009092.1	1482838	1483140	D	KEGG: son:SO3325 NrfJ-related protein; NrfJ-related protein	1482838..1483140	Shewanella loihica PV-4	4920461
YP_001093413.1	CDS	Shew_1284	NC_009092.1	1483404	1483904	D	PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1289 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	1483404..1483904	Shewanella loihica PV-4	4920466
YP_001093414.1	CDS	Shew_1285	NC_009092.1	1484046	1485806	R	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: she:Shewmr4_1223 metallophosphoesterase; 5'-nucleotidase	complement(1484046..1485806)	Shewanella loihica PV-4	4920532
YP_001093415.1	CDS	Shew_1286	NC_009092.1	1485948	1487081	R	PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: shm:Shewmr7_1295 protein of unknown function DUF21; hypothetical protein	complement(1485948..1487081)	Shewanella loihica PV-4	4921639
YP_001093416.1	CDS	Shew_1287	NC_009092.1	1487227	1488348	D	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N	1487227..1488348	Shewanella loihica PV-4	4923180
YP_001093417.1	CDS	Shew_1288	NC_009092.1	1488381	1489169	D	KEGG: shm:Shewmr7_1297 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW	1488381..1489169	Shewanella loihica PV-4	4920545
YP_001093418.1	CDS	Shew_1289	NC_009092.1	1489169	1490179	D	KEGG: sfr:Sfri_1115 hypothetical protein; hypothetical protein	1489169..1490179	Shewanella loihica PV-4	4920547
YP_001093419.1	CDS	ispG	NC_009092.1	1490199	1491314	D	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1490199..1491314	Shewanella loihica PV-4	4920548
YP_001093420.1	CDS	hisS	NC_009092.1	1491468	1492739	D	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase	1491468..1492739	Shewanella loihica PV-4	4923678
YP_001093421.1	CDS	Shew_1292	NC_009092.1	1492754	1493377	D	PFAM: Tetratricopeptide TPR_4; KEGG: shm:Shewmr7_1301 hypothetical protein; hypothetical protein	1492754..1493377	Shewanella loihica PV-4	4923911
YP_001093422.1	CDS	Shew_1293	NC_009092.1	1493389	1494576	D	with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL	1493389..1494576	Shewanella loihica PV-4	4920497
YP_001093423.1	CDS	engA	NC_009092.1	1494671	1496140	D	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA	1494671..1496140	Shewanella loihica PV-4	4920430
YP_001093424.1	CDS	Shew_1295	NC_009092.1	1496331	1496864	D	KEGG: vpa:VP2004 hypothetical protein; hypothetical protein	1496331..1496864	Shewanella loihica PV-4	4924096
YP_001093425.1	CDS	xseA	NC_009092.1	1497096	1498424	R	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit	complement(1497096..1498424)	Shewanella loihica PV-4	4920612
YP_001093426.1	CDS	Shew_1297	NC_009092.1	1498544	1500010	D	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase	1498544..1500010	Shewanella loihica PV-4	4920422
YP_001093427.1	CDS	guaA	NC_009092.1	1500113	1501690	D	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase	1500113..1501690	Shewanella loihica PV-4	4920423
YP_001093428.1	CDS	Shew_1299	NC_009092.1	1501837	1502373	D	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: she:Shewmr4_1236 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase	1501837..1502373	Shewanella loihica PV-4	4920429
YP_001093429.1	CDS	Shew_1300	NC_009092.1	1502607	1504037	R	YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase	complement(1502607..1504037)	Shewanella loihica PV-4	4920419
YP_001093430.1	CDS	Shew_1301	NC_009092.1	1504363	1508244	D	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase	1504363..1508244	Shewanella loihica PV-4	4920439
YP_001093431.1	CDS	Shew_1302	NC_009092.1	1509487	1511043	D	PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_1310 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase, subunit I	1509487..1511043	Shewanella loihica PV-4	4920445
YP_001093432.1	CDS	Shew_1303	NC_009092.1	1511059	1512198	D	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II	1511059..1512198	Shewanella loihica PV-4	4920444
YP_001093433.1	CDS	Shew_1304	NC_009092.1	1512213	1512329	D	TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sfr:Sfri_1144 cyd operon protein YbgT; cyd operon protein YbgT	1512213..1512329	Shewanella loihica PV-4	4920450
YP_001093434.1	CDS	Shew_1305	NC_009092.1	1512902	1513342	D	PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease	1512902..1513342	Shewanella loihica PV-4	4920458
YP_001093435.1	CDS	Shew_1306	NC_009092.1	1513910	1514731	D	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: tma:TM1828 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; zinc-binding CMP/dCMP deaminase	1513910..1514731	Shewanella loihica PV-4	4920459
YP_001093436.1	CDS	Shew_1307	NC_009092.1	1514848	1516023	D	hypothetical protein	1514848..1516023	Shewanella loihica PV-4	4920451
YP_001093437.1	CDS	Shew_1308	NC_009092.1	1516150	1517382	D	hypothetical protein	1516150..1517382	Shewanella loihica PV-4	4920468
YP_001093438.1	CDS	Shew_1310	NC_009092.1	1518535	1520538	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1243 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(1518535..1520538)	Shewanella loihica PV-4	4922707
YP_001093439.1	CDS	Shew_1311	NC_009092.1	1520737	1523808	R	PFAM: acriflavin resistance protein; KEGG: sdn:Sden_1277 acriflavin resistance protein; acriflavin resistance protein	complement(1520737..1523808)	Shewanella loihica PV-4	4920475
YP_001093440.1	CDS	Shew_1312	NC_009092.1	1523812	1524927	R	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit	complement(1523812..1524927)	Shewanella loihica PV-4	4920479
YP_001093441.1	CDS	Shew_1313	NC_009092.1	1525070	1525681	D	PFAM: regulatory protein, TetR; KEGG: sdn:Sden_1279 regulatory protein, TetR; TetR family transcriptional regulator	1525070..1525681	Shewanella loihica PV-4	4920485
YP_001093442.1	CDS	Shew_1314	NC_009092.1	1525895	1526809	D	KEGG: sfr:Sfri_1150 hypothetical protein; hypothetical protein	1525895..1526809	Shewanella loihica PV-4	4920487
YP_001093443.1	CDS	Shew_1315	NC_009092.1	1526949	1527521	R	KEGG: shm:Shewmr7_1319 hypothetical protein; hypothetical protein	complement(1526949..1527521)	Shewanella loihica PV-4	4920488
YP_001093444.1	CDS	Shew_1316	NC_009092.1	1527554	1528033	R	KEGG: sdn:Sden_1282 hypothetical protein; hypothetical protein	complement(1527554..1528033)	Shewanella loihica PV-4	4920481
YP_001093445.1	CDS	Shew_1317	NC_009092.1	1528142	1530622	R	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sdn:Sden_1285 protein of unknown function DUF115; hypothetical protein	complement(1528142..1530622)	Shewanella loihica PV-4	4920495
YP_001093446.1	CDS	Shew_1318	NC_009092.1	1531054	1532052	D	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD	1531054..1532052	Shewanella loihica PV-4	4920500
YP_001093447.1	CDS	Shew_1319	NC_009092.1	1532052	1533218	D	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: sdn:Sden_1287 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase	1532052..1533218	Shewanella loihica PV-4	4920505
YP_001093448.1	CDS	Shew_1320	NC_009092.1	1533202	1534407	R	PFAM: Methyltransferase type 12; KEGG: sdn:Sden_3104 methyltransferase type 12; type 12 methyltransferase	complement(1533202..1534407)	Shewanella loihica PV-4	4920514
YP_001093449.1	CDS	Shew_1321	NC_009092.1	1534408	1535598	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_3105 methyltransferase type 12; type 12 methyltransferase	complement(1534408..1535598)	Shewanella loihica PV-4	4920503
YP_001093450.1	CDS	Shew_1322	NC_009092.1	1535609	1536337	R	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sdn:Sden_3106 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(1535609..1536337)	Shewanella loihica PV-4	4920523
YP_001093451.1	CDS	Shew_1323	NC_009092.1	1536337	1537479	R	KEGG: sdn:Sden_3107 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein; acyl-CoA synthetase/AMP-acid ligase	complement(1536337..1537479)	Shewanella loihica PV-4	4920524
YP_001093452.1	CDS	Shew_1324	NC_009092.1	1537479	1537724	R	KEGG: sdn:Sden_3108 hypothetical protein; hypothetical protein	complement(1537479..1537724)	Shewanella loihica PV-4	4920527
YP_001093453.1	CDS	Shew_1325	NC_009092.1	1537721	1538287	R	KEGG: sdn:Sden_3109 acetyltransferases including N-acetylases of ribosomal proteins-like protein; acetyltransferase-like protein	complement(1537721..1538287)	Shewanella loihica PV-4	4920511
YP_001093454.1	CDS	Shew_1326	NC_009092.1	1538297	1539058	R	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sdn:Sden_3110 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(1538297..1539058)	Shewanella loihica PV-4	4920535
YP_001093455.1	CDS	Shew_1327	NC_009092.1	1539077	1539310	R	KEGG: sdn:Sden_3111 hypothetical protein; hypothetical protein	complement(1539077..1539310)	Shewanella loihica PV-4	4920543
YP_001093456.1	CDS	Shew_1328	NC_009092.1	1539395	1540132	R	PFAM: acylneuraminate cytidylyltransferase; KEGG: sdn:Sden_3112 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase	complement(1539395..1540132)	Shewanella loihica PV-4	4920551
YP_001093457.1	CDS	Shew_1329	NC_009092.1	1540133	1541209	R	PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: sdn:Sden_3113 N-acetylneuraminic acid synthase-like protein; N-acylneuraminate-9-phosphate synthase	complement(1540133..1541209)	Shewanella loihica PV-4	4920533
YP_001093458.1	CDS	Shew_1330	NC_009092.1	1541211	1542320	R	PFAM: Rieske [2Fe-2S] domain protein; KEGG: sdn:Sden_3114 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein	complement(1541211..1542320)	Shewanella loihica PV-4	4922572
YP_001093459.1	CDS	Shew_1331	NC_009092.1	1542317	1543387	R	KEGG: sdn:Sden_3115 spore coat polysaccharide biosynthesis protein predicted glycosyltransferase-like protein; spore coat polysaccharide biosynthesis protein glycosyltransferase-like	complement(1542317..1543387)	Shewanella loihica PV-4	4922573
YP_001093460.1	CDS	Shew_1332	NC_009092.1	1543365	1544117	R	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sdn:Sden_3118 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(1543365..1544117)	Shewanella loihica PV-4	4924138
YP_001093461.1	CDS	Shew_1333	NC_009092.1	1544117	1545208	R	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sdn:Sden_3119 3-oxoacyl-(acyl-carrier protein) synthase; 3-oxoacyl-ACP synthase	complement(1544117..1545208)	Shewanella loihica PV-4	4923709
YP_001093462.1	CDS	Shew_1334	NC_009092.1	1545341	1546363	D	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: sdn:Sden_3120 3-oxoacyl-(acyl-carrier protein) synthase; 3-oxoacyl-ACP synthase	1545341..1546363	Shewanella loihica PV-4	4923853
YP_001093463.1	CDS	Shew_1335	NC_009092.1	1546346	1546609	R	KEGG: son:SO3260 hypothetical protein; hypothetical protein	complement(1546346..1546609)	Shewanella loihica PV-4	4924111
YP_001093464.1	CDS	Shew_1336	NC_009092.1	1546606	1547901	R	KEGG: son:SO3259 hypothetical protein; hypothetical protein	complement(1546606..1547901)	Shewanella loihica PV-4	4924386
YP_001093465.1	CDS	Shew_1337	NC_009092.1	1548104	1549264	R	KEGG: shm:Shewmr7_1321 hypothetical protein; hypothetical protein	complement(1548104..1549264)	Shewanella loihica PV-4	4922708
YP_001093466.1	CDS	Shew_1338	NC_009092.1	1549666	1550292	D	KEGG: shm:Shewmr7_1322 hypothetical protein; hypothetical protein	1549666..1550292	Shewanella loihica PV-4	4923776
YP_001093467.1	CDS	Shew_1339	NC_009092.1	1550289	1550735	D	PFAM: protein of unknown function DUF400; KEGG: shm:Shewmr7_1323 protein of unknown function DUF400; hypothetical protein	1550289..1550735	Shewanella loihica PV-4	4923777
YP_001093468.1	CDS	Shew_1340	NC_009092.1	1550814	1551239	R	PFAM: FlgN family protein; KEGG: shm:Shewmr7_1324 FlgN family protein; FlgN family protein	complement(1550814..1551239)	Shewanella loihica PV-4	4920525
YP_001093469.1	CDS	Shew_1341	NC_009092.1	1551250	1551567	R	PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: sfr:Sfri_1157 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM	complement(1551250..1551567)	Shewanella loihica PV-4	4920452
YP_001093470.1	CDS	flgA	NC_009092.1	1551688	1552395	R	required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA	complement(1551688..1552395)	Shewanella loihica PV-4	4920427
YP_001093471.1	CDS	Shew_1343	NC_009092.1	1552605	1553525	D	PFAM: response regulator receiver; CheW domain protein; KEGG: she:Shewmr4_1257 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein	1552605..1553525	Shewanella loihica PV-4	4920486
YP_001093472.1	CDS	Shew_1344	NC_009092.1	1553669	1554502	D	PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: shm:Shewmr7_1328 MCP methyltransferase, CheR-type; chemotaxis protein CheR	1553669..1554502	Shewanella loihica PV-4	4920492
YP_001093473.1	CDS	flgB	NC_009092.1	1554691	1555089	D	with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB	1554691..1555089	Shewanella loihica PV-4	4923549
YP_001093474.1	CDS	flgC	NC_009092.1	1555092	1555511	D	with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC	1555092..1555511	Shewanella loihica PV-4	4920518
YP_001093475.1	CDS	flgD	NC_009092.1	1555522	1556304	D	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein	1555522..1556304	Shewanella loihica PV-4	4920519
YP_001093476.1	CDS	flgE	NC_009092.1	1556368	1557729	D	the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE	1556368..1557729	Shewanella loihica PV-4	4921511
YP_001093477.1	CDS	flgF	NC_009092.1	1557929	1558672	D	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF	1557929..1558672	Shewanella loihica PV-4	4924143
YP_001093478.1	CDS	flgG	NC_009092.1	1558683	1559471	D	makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG	1558683..1559471	Shewanella loihica PV-4	4921407
YP_001093479.1	CDS	flgH	NC_009092.1	1559481	1560185	D	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein	1559481..1560185	Shewanella loihica PV-4	4924251
YP_001093480.1	CDS	flgI	NC_009092.1	1560197	1561288	D	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein	1560197..1561288	Shewanella loihica PV-4	4922527
YP_001093481.1	CDS	flgJ	NC_009092.1	1561336	1562361	D	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ	1561336..1562361	Shewanella loihica PV-4	4923608
YP_001093482.1	CDS	Shew_1354	NC_009092.1	1562426	1564342	D	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shm:Shewmr7_1338 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK	1562426..1564342	Shewanella loihica PV-4	4923881
YP_001093483.1	CDS	flgL	NC_009092.1	1564354	1565544	D	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL	1564354..1565544	Shewanella loihica PV-4	4923882
YP_001093484.1	CDS	Shew_1356	NC_009092.1	1565632	1566453	D	PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein	1565632..1566453	Shewanella loihica PV-4	4922526
YP_001093485.1	CDS	Shew_1357	NC_009092.1	1566690	1567508	D	PFAM: flagellin domain protein; KEGG: sdn:Sden_1315 flagellin-like protein; flagellin domain-containing protein	1566690..1567508	Shewanella loihica PV-4	4923190
YP_001093486.1	CDS	Shew_1358	NC_009092.1	1567613	1568002	D	PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein	1567613..1568002	Shewanella loihica PV-4	4922436
YP_001093487.1	CDS	Shew_1359	NC_009092.1	1568033	1569406	D	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein	1568033..1569406	Shewanella loihica PV-4	4922204
YP_001093488.1	CDS	Shew_1360	NC_009092.1	1569434	1569754	D	KEGG: sdn:Sden_1318 hypothetical protein; hypothetical protein	1569434..1569754	Shewanella loihica PV-4	4921971
YP_001093489.1	CDS	fliS	NC_009092.1	1569761	1570171	D	flagellin specific chaperone; flagellar protein FliS	1569761..1570171	Shewanella loihica PV-4	4921868
YP_001093490.1	CDS	Shew_1362	NC_009092.1	1570438	1571871	D	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: she:Shewmr4_1278 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator	1570438..1571871	Shewanella loihica PV-4	4921809
YP_001093491.1	CDS	Shew_1363	NC_009092.1	1572027	1573115	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: she:Shewmr4_1279 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase	1572027..1573115	Shewanella loihica PV-4	4921810
YP_001093492.1	CDS	Shew_1364	NC_009092.1	1573108	1574451	D	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_1180 two component, sigma54 specific, transcriptional regulator, fis family protein; two component, sigma54 specific, Fis family transcriptional regulator	1573108..1574451	Shewanella loihica PV-4	4921039
YP_001093493.1	CDS	Shew_1365	NC_009092.1	1574648	1574980	D	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: shm:Shewmr7_1348 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE	1574648..1574980	Shewanella loihica PV-4	4924144
YP_001093494.1	CDS	fliF	NC_009092.1	1575039	1576736	D	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein	1575039..1576736	Shewanella loihica PV-4	4922703
YP_001093495.1	CDS	fliG	NC_009092.1	1576729	1577772	D	One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G	1576729..1577772	Shewanella loihica PV-4	4924004
YP_001093496.1	CDS	Shew_1368	NC_009092.1	1577772	1578791	D	PFAM: flagellar assembly protein FliH; KEGG: shm:Shewmr7_1351 flagellar assembly protein FliH; flagellar assembly protein FliH	1577772..1578791	Shewanella loihica PV-4	4924149
YP_001093497.1	CDS	fliI	NC_009092.1	1578763	1580103	D	involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase	1578763..1580103	Shewanella loihica PV-4	4922147
YP_001093498.1	CDS	Shew_1370	NC_009092.1	1580133	1580579	D	TIGRFAM: flagellar export protein FliJ; KEGG: shm:Shewmr7_1353 flagellar export protein FliJ; flagellar export protein FliJ	1580133..1580579	Shewanella loihica PV-4	4923152
YP_001093499.1	CDS	Shew_1371	NC_009092.1	1580960	1582666	D	PFAM: flagellar hook-length control protein; KEGG: sfr:Sfri_1187 flagellar hook-length control protein; flagellar hook-length control protein	1580960..1582666	Shewanella loihica PV-4	4923153
YP_001093500.1	CDS	fliL	NC_009092.1	1582766	1583287	D	interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL	1582766..1583287	Shewanella loihica PV-4	4924131
YP_001093501.1	CDS	fliM	NC_009092.1	1583330	1584355	D	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM	1583330..1584355	Shewanella loihica PV-4	4921812
YP_001093502.1	CDS	fliN	NC_009092.1	1584381	1584764	D	One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein	1584381..1584764	Shewanella loihica PV-4	4921828
YP_001093503.1	CDS	Shew_1375	NC_009092.1	1584774	1585151	D	PFAM: flagellar biosynthesis protein, FliO; KEGG: sfr:Sfri_1191 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO	1584774..1585151	Shewanella loihica PV-4	4921922
YP_001093504.1	CDS	fliP	NC_009092.1	1585148	1585915	D	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP	1585148..1585915	Shewanella loihica PV-4	4922266
YP_001093505.1	CDS	Shew_1377	NC_009092.1	1585924	1586193	D	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: sdn:Sden_1337 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ	1585924..1586193	Shewanella loihica PV-4	4922834
YP_001093506.1	CDS	fliR	NC_009092.1	1586236	1587033	D	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR	1586236..1587033	Shewanella loihica PV-4	4922893
YP_001093507.1	CDS	flhB	NC_009092.1	1587033	1588166	D	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB	1587033..1588166	Shewanella loihica PV-4	4922894
YP_001093508.1	CDS	flhA	NC_009092.1	1588319	1590418	D	membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA	1588319..1590418	Shewanella loihica PV-4	4923611
YP_001093509.1	CDS	flhF	NC_009092.1	1590430	1591854	D	positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF	1590430..1591854	Shewanella loihica PV-4	4920435
YP_001093510.1	CDS	Shew_1382	NC_009092.1	1591829	1592740	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase	1591829..1592740	Shewanella loihica PV-4	4922435
YP_001093511.1	CDS	fliA	NC_009092.1	1592733	1593452	D	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor	1592733..1593452	Shewanella loihica PV-4	4922517
YP_001093512.1	CDS	Shew_1384	NC_009092.1	1593495	1593878	D	PFAM: response regulator receiver; KEGG: shm:Shewmr7_1367 response regulator receiver protein; response regulator receiver protein	1593495..1593878	Shewanella loihica PV-4	4922897
YP_001093513.1	CDS	Shew_1385	NC_009092.1	1593892	1594629	D	PFAM: Chemotaxis phosphatase, CheZ; KEGG: sfr:Sfri_1201 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ	1593892..1594629	Shewanella loihica PV-4	4921811
YP_001093514.1	CDS	Shew_1386	NC_009092.1	1594645	1596885	D	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: shm:Shewmr7_1369 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase	1594645..1596885	Shewanella loihica PV-4	4923671
YP_001093515.1	CDS	Shew_1387	NC_009092.1	1596979	1598088	D	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase	1596979..1598088	Shewanella loihica PV-4	4923672
YP_001093516.1	CDS	Shew_1388	NC_009092.1	1598081	1598704	D	KEGG: shm:Shewmr7_1371 hypothetical protein; hypothetical protein	1598081..1598704	Shewanella loihica PV-4	4922636
YP_001093517.1	CDS	Shew_1389	NC_009092.1	1598751	1599542	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1372 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase	1598751..1599542	Shewanella loihica PV-4	4922574
YP_001093518.1	CDS	Shew_1390	NC_009092.1	1599526	1600515	D	PFAM: CheW domain protein; KEGG: shm:Shewmr7_1373 CheW protein; CheW protein	1599526..1600515	Shewanella loihica PV-4	4922798
YP_001093519.1	CDS	Shew_1391	NC_009092.1	1600523	1601017	D	PFAM: CheW domain protein; KEGG: shm:Shewmr7_1374 CheW protein; CheW protein	1600523..1601017	Shewanella loihica PV-4	4921167
YP_001093520.1	CDS	Shew_1392	NC_009092.1	1601149	1601556	D	KEGG: shm:Shewmr7_1375 hypothetical protein; hypothetical protein	1601149..1601556	Shewanella loihica PV-4	4922059
YP_001093521.1	CDS	Shew_1393	NC_009092.1	1601587	1601943	R	KEGG: shm:Shewmr7_1376 FlhB domain protein; FlhB domain-containing protein	complement(1601587..1601943)	Shewanella loihica PV-4	4922014
YP_001093522.1	CDS	Shew_1394	NC_009092.1	1601943	1604096	R	KEGG: she:Shewmr4_1310 hypothetical protein; hypothetical protein	complement(1601943..1604096)	Shewanella loihica PV-4	4921961
YP_001093523.1	CDS	Shew_1395	NC_009092.1	1604284	1605066	D	PFAM: VacJ family lipoprotein; KEGG: shm:Shewmr7_1378 VacJ family lipoprotein; VacJ family lipoprotein	1604284..1605066	Shewanella loihica PV-4	4921962
YP_001093524.1	CDS	Shew_1396	NC_009092.1	1605197	1606300	D	PFAM: response regulator receiver; KEGG: son:SO3196 response regulator; response regulator receiver protein	1605197..1606300	Shewanella loihica PV-4	4921274
YP_001093525.1	CDS	Shew_1397	NC_009092.1	1606406	1607875	R	TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1380 amino acid/peptide transporter; amino acid/peptide transporter	complement(1606406..1607875)	Shewanella loihica PV-4	4923809
YP_001093526.1	CDS	Shew_1398	NC_009092.1	1608453	1608980	D	KEGG: sfr:Sfri_2844 NusG antitermination factor; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor	1608453..1608980	Shewanella loihica PV-4	4921560
YP_001093527.1	CDS	Shew_1399	NC_009092.1	1609752	1612514	D	PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein	1609752..1612514	Shewanella loihica PV-4	4921441
YP_001093528.1	CDS	Shew_1400	NC_009092.1	1612600	1613574	D	PFAM: lipopolysaccharide biosynthesis protein; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis protein	1612600..1613574	Shewanella loihica PV-4	4923834
YP_001093529.1	CDS	Shew_1401	NC_009092.1	1613792	1614889	D	NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase	1613792..1614889	Shewanella loihica PV-4	4923540
YP_001093530.1	CDS	Shew_1402	NC_009092.1	1614889	1615764	D	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2829 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase	1614889..1615764	Shewanella loihica PV-4	4923174
YP_001093531.1	CDS	Shew_1403	NC_009092.1	1615774	1616640	D	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sdn:Sden_2661 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase	1615774..1616640	Shewanella loihica PV-4	4923175
YP_001093532.1	CDS	Shew_1404	NC_009092.1	1616643	1617188	D	KEGG: sfr:Sfri_2827 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase	1616643..1617188	Shewanella loihica PV-4	4922427
YP_001093533.1	CDS	Shew_1405	NC_009092.1	1617188	1618246	D	PFAM: glycosyl transferase, group 1; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1; group 1 glycosyl transferase	1617188..1618246	Shewanella loihica PV-4	4921415
YP_001093534.1	CDS	Shew_1406	NC_009092.1	1618274	1619782	D	PFAM: polysaccharide biosynthesis protein; KEGG: bfs:BF2791 putative transmembrane protein; polysaccharide biosynthesis protein	1618274..1619782	Shewanella loihica PV-4	4922976
YP_001093535.1	CDS	Shew_1407	NC_009092.1	1619923	1620663	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: blo:BL0232 probable 3-oxoacyl-[acyl-carrier protein] reductase; short-chain dehydrogenase/reductase SDR	1619923..1620663	Shewanella loihica PV-4	4921267
YP_001093536.1	CDS	Shew_1408	NC_009092.1	1620695	1622437	D	PFAM: thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: blo:BL0231 2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; thiamine pyrophosphate binding domain-containing protein	1620695..1622437	Shewanella loihica PV-4	4922801
YP_001093537.1	CDS	Shew_1409	NC_009092.1	1622440	1623570	D	KEGG: bfs:BF2794 hypothetical protein; hypothetical protein	1622440..1623570	Shewanella loihica PV-4	4923241
YP_001093538.1	CDS	Shew_1410	NC_009092.1	1623567	1624721	D	PFAM: glycosyl transferase, group 1; KEGG: sat:SYN_00823 glycosyltransferase; group 1 glycosyl transferase	1623567..1624721	Shewanella loihica PV-4	4923267
YP_001093539.1	CDS	Shew_1411	NC_009092.1	1624733	1625311	D	PFAM: transferase hexapeptide repeat containing protein; KEGG: pfl:PFL_5101 O-acetyltransferase, putative; hexapaptide repeat-containing transferase	1624733..1625311	Shewanella loihica PV-4	4923268
YP_001093540.1	CDS	Shew_1412	NC_009092.1	1625289	1626407	D	KEGG: ter:Tery_3239 tetratricopeptide TPR_2; hypothetical protein	1625289..1626407	Shewanella loihica PV-4	4923466
YP_001093541.1	CDS	Shew_1413	NC_009092.1	1626400	1627377	D	hypothetical protein	1626400..1627377	Shewanella loihica PV-4	4920822
YP_001093542.1	CDS	Shew_1414	NC_009092.1	1627377	1628186	D	PFAM: glycosyl transferase, family 2; KEGG: bfs:BF1562 putative glycosyltransferase O-antigen related protein; glycosyl transferase family protein	1627377..1628186	Shewanella loihica PV-4	4921209
YP_001093543.1	CDS	Shew_1416	NC_009092.1	1629679	1630746	D	TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: sfr:Sfri_2825 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	1629679..1630746	Shewanella loihica PV-4	4922709
YP_001093544.1	CDS	Shew_1417	NC_009092.1	1630900	1631943	D	TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: shm:Shewmr7_1397 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	1630900..1631943	Shewanella loihica PV-4	4921488
YP_001093545.1	CDS	Shew_1418	NC_009092.1	1631972	1632892	D	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2823 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase GalU	1631972..1632892	Shewanella loihica PV-4	4922035
YP_001093546.1	CDS	Shew_1420	NC_009092.1	1634084	1634827	D	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfr:Sfri_3709 PHP C-terminal domain protein; putative hydrolase	1634084..1634827	Shewanella loihica PV-4	4922710
YP_001093547.1	CDS	Shew_1421	NC_009092.1	1635111	1635779	D	hypothetical protein	1635111..1635779	Shewanella loihica PV-4	4922415
YP_001093548.1	CDS	Shew_1422	NC_009092.1	1636162	1637067	D	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2	1636162..1637067	Shewanella loihica PV-4	4923674
YP_001093549.1	CDS	Shew_1423	NC_009092.1	1637085	1638542	D	KEGG: cps:CPS_2143 sulfate adenylate transferase, subunit 1; TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase, large subunit	1637085..1638542	Shewanella loihica PV-4	4923675
YP_001093550.1	CDS	Shew_1424	NC_009092.1	1638702	1640429	D	PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_2144 putative transporter; TrkA domain-containing protein	1638702..1640429	Shewanella loihica PV-4	4923519
YP_001093551.1	CDS	Shew_1425	NC_009092.1	1640492	1641121	D	PFAM: adenylylsulfate kinase; KEGG: cps:CPS_2145 adenylylsulfate kinase; adenylylsulfate kinase	1640492..1641121	Shewanella loihica PV-4	4921933
YP_001093552.1	CDS	Shew_1426	NC_009092.1	1641299	1642765	R	KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein	complement(1641299..1642765)	Shewanella loihica PV-4	4923916
YP_001093553.1	CDS	Shew_1427	NC_009092.1	1643151	1643945	D	TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sfr:Sfri_1320 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase	1643151..1643945	Shewanella loihica PV-4	4920613
YP_001093554.1	CDS	Shew_1428	NC_009092.1	1643974	1644864	D	catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase	1643974..1644864	Shewanella loihica PV-4	4920614
YP_001093555.1	CDS	Shew_1429	NC_009092.1	1644939	1645679	D	PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein	1644939..1645679	Shewanella loihica PV-4	4920881
YP_001093556.1	CDS	Shew_1430	NC_009092.1	1645692	1646360	D	KEGG: sdn:Sden_2599 hypothetical protein; hypothetical protein	1645692..1646360	Shewanella loihica PV-4	4921357
YP_001093557.1	CDS	Shew_1431	NC_009092.1	1646533	1646988	R	PFAM: protein of unknown function DUF583; KEGG: sfr:Sfri_3256 protein of unknown function DUF583; hypothetical protein	complement(1646533..1646988)	Shewanella loihica PV-4	4924316
YP_001093558.1	CDS	Shew_1432	NC_009092.1	1647099	1647575	R	TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfr:Sfri_1326 ferredoxin-type protein NapF; ferredoxin-type protein NapF	complement(1647099..1647575)	Shewanella loihica PV-4	4921272
YP_001093559.1	CDS	Shew_1433	NC_009092.1	1647620	1648633	R	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_2676 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase	complement(1647620..1648633)	Shewanella loihica PV-4	4921273
YP_001093560.1	CDS	Shew_1434	NC_009092.1	1648633	1649553	R	KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase GalU	complement(1648633..1649553)	Shewanella loihica PV-4	4921712
YP_001093561.1	CDS	phhA	NC_009092.1	1649972	1650805	D	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase	1649972..1650805	Shewanella loihica PV-4	4921874
YP_001093562.1	CDS	phhB	NC_009092.1	1650852	1651190	D	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase	1650852..1651190	Shewanella loihica PV-4	4922058
YP_001093563.1	CDS	Shew_1437	NC_009092.1	1651424	1652968	D	PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulator TyrR	1651424..1652968	Shewanella loihica PV-4	4924351
YP_001093564.1	CDS	Shew_1438	NC_009092.1	1653215	1654201	D	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sdn:Sden_2592 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase	1653215..1654201	Shewanella loihica PV-4	4924352
YP_001093565.1	CDS	Shew_1439	NC_009092.1	1654295	1654939	D	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_2670 maleylacetoacetate isomerase; maleylacetoacetate isomerase	1654295..1654939	Shewanella loihica PV-4	4922365
YP_001093566.1	CDS	Shew_1440	NC_009092.1	1654969	1655859	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1696 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(1654969..1655859)	Shewanella loihica PV-4	4924364
YP_001093567.1	CDS	Shew_1441	NC_009092.1	1656060	1657277	D	PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative; major facilitator superfamily transporter	1656060..1657277	Shewanella loihica PV-4	4923045
YP_001093568.1	CDS	Shew_1442	NC_009092.1	1657319	1658686	R	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; two component, sigma54 specific, Fis family transcriptional regulator	complement(1657319..1658686)	Shewanella loihica PV-4	4923149
YP_001093569.1	CDS	Shew_1443	NC_009092.1	1658689	1660512	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_1360 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(1658689..1660512)	Shewanella loihica PV-4	4923150
YP_001093570.1	CDS	Shew_1444	NC_009092.1	1660596	1661993	R	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfr:Sfri_2717 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM	complement(1660596..1661993)	Shewanella loihica PV-4	4923554
YP_001093571.1	CDS	Shew_1445	NC_009092.1	1661993	1662631	R	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: shm:Shewmr7_1427 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ	complement(1661993..1662631)	Shewanella loihica PV-4	4923778
YP_001093572.1	CDS	Shew_1446	NC_009092.1	1662719	1663729	R	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfr:Sfri_2715 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP	complement(1662719..1663729)	Shewanella loihica PV-4	4923761
YP_001093573.1	CDS	Shew_1447	NC_009092.1	1663993	1665258	R	PFAM: major facilitator superfamily MFS_1; KEGG: ftf:FTF0444 multidrug transporter (tetracycline resistance protein); major facilitator superfamily transporter	complement(1663993..1665258)	Shewanella loihica PV-4	4924403
YP_001093574.1	CDS	Shew_1448	NC_009092.1	1665367	1665594	R	KEGG: shm:Shewmr7_1429 hypothetical protein; hypothetical protein	complement(1665367..1665594)	Shewanella loihica PV-4	4924404
YP_001093575.1	CDS	gltX	NC_009092.1	1667390	1668799	D	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase	1667390..1668799	Shewanella loihica PV-4	4922583
YP_001093576.1	CDS	Shew_1450	NC_009092.1	1670738	1671238	D	KEGG: cps:CPS_2544 putative cytochrome P460; putative cytochrome P460	1670738..1671238	Shewanella loihica PV-4	4922020
YP_001093577.1	CDS	Shew_1451	NC_009092.1	1671372	1673201	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_1431 ABC transporter-related protein; ABC transporter-like protein	complement(1671372..1673201)	Shewanella loihica PV-4	4924152
YP_001093578.1	CDS	Shew_1452	NC_009092.1	1673444	1674955	D	PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: she:Shewmr4_1367 transcriptional regulator, AraC family; AraC family transcriptional regulator	1673444..1674955	Shewanella loihica PV-4	4922901
YP_001093579.1	CDS	Shew_1453	NC_009092.1	1675021	1675608	D	KEGG: shm:Shewmr7_1433 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase	1675021..1675608	Shewanella loihica PV-4	4922902
YP_001093580.1	CDS	Shew_1454	NC_009092.1	1675723	1677048	D	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3125 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase	1675723..1677048	Shewanella loihica PV-4	4924276
YP_001093581.1	CDS	Shew_1455	NC_009092.1	1677082	1677552	D	PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase	1677082..1677552	Shewanella loihica PV-4	4920830
YP_001093582.1	CDS	Shew_1456	NC_009092.1	1677608	1679176	D	PFAM: phospholipase D/Transphosphatidylase; KEGG: shm:Shewmr7_1436 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase	1677608..1679176	Shewanella loihica PV-4	4921204
YP_001093583.1	CDS	Shew_1457	NC_009092.1	1679220	1680164	D	PFAM: response regulator receiver; CheW domain protein; KEGG: shm:Shewmr7_1437 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein	1679220..1680164	Shewanella loihica PV-4	4921861
YP_001093584.1	CDS	Shew_1458	NC_009092.1	1680465	1681688	D	involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT	1680465..1681688	Shewanella loihica PV-4	4921862
YP_001093585.1	CDS	Shew_1459	NC_009092.1	1682087	1682491	D	KEGG: son:SO3119 hypothetical protein; hypothetical protein	1682087..1682491	Shewanella loihica PV-4	4922456
YP_001093586.1	CDS	Shew_1460	NC_009092.1	1682576	1683229	R	PFAM: pseudouridine synthase; KEGG: sdn:Sden_2524 pseudouridylate synthase; pseudouridine synthase	complement(1682576..1683229)	Shewanella loihica PV-4	4922837
YP_001093587.1	CDS	Shew_1461	NC_009092.1	1683421	1684398	D	KEGG: cps:CPS_1467 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein	1683421..1684398	Shewanella loihica PV-4	4923543
YP_001093588.1	CDS	Shew_1462	NC_009092.1	1684467	1685117	R	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative; lysine exporter protein LysE/YggA	complement(1684467..1685117)	Shewanella loihica PV-4	4920968
YP_001093589.1	CDS	Shew_1463	NC_009092.1	1685245	1686084	R	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO0766 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator	complement(1685245..1686084)	Shewanella loihica PV-4	4920969
YP_001093590.1	CDS	nadE	NC_009092.1	1686260	1687126	D	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase	1686260..1687126	Shewanella loihica PV-4	4921959
YP_001093591.1	CDS	Shew_1465	NC_009092.1	1687270	1687776	R	KEGG: she:Shewmr4_2245 hypothetical protein; hypothetical protein	complement(1687270..1687776)	Shewanella loihica PV-4	4924395
YP_001093592.1	CDS	Shew_1466	NC_009092.1	1687890	1689467	D	KEGG: she:Shewmr4_2244 hypothetical protein; hypothetical protein	1687890..1689467	Shewanella loihica PV-4	4924076
YP_001093593.1	CDS	Shew_1467	NC_009092.1	1689626	1691794	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_1435 GGDEF domain; diguanylate cyclase	complement(1689626..1691794)	Shewanella loihica PV-4	4921051
YP_001093594.1	CDS	Shew_1468	NC_009092.1	1692664	1693248	D	hypothetical protein	1692664..1693248	Shewanella loihica PV-4	4921052
YP_001093595.1	CDS	Shew_1469	NC_009092.1	1693317	1694948	D	KEGG: gsu:GSU0552 hypothetical protein; hypothetical protein	1693317..1694948	Shewanella loihica PV-4	4922349
YP_001093596.1	CDS	Shew_1470	NC_009092.1	1695404	1697191	R	PFAM: sulfatase; KEGG: shm:Shewmr7_2295 sulfatase; sulfatase	complement(1695404..1697191)	Shewanella loihica PV-4	4922021
YP_001093597.2	CDS	Shew_1471	NC_009092.1	1697292	1697507	R	PFAM: protein of unknown function DUF1414; KEGG: shm:Shewmr7_2294 protein of unknown function DUF1414; hypothetical protein	complement(1697292..1697507)	Shewanella loihica PV-4	4920596
YP_001093598.1	CDS	Shew_1472	NC_009092.1	1697585	1698616	D	PFAM: 37 kDa nucleoid-associated protein; KEGG: she:Shewmr4_2217 37 kDa nucleoid-associated protein; nucleoid-associated protein NdpA	1697585..1698616	Shewanella loihica PV-4	4921485
YP_001093599.1	CDS	Shew_1473	NC_009092.1	1698846	1699730	D	KEGG: sdn:Sden_2379 hypothetical protein; hypothetical protein	1698846..1699730	Shewanella loihica PV-4	4921486
YP_001093600.1	CDS	Shew_1474	NC_009092.1	1699794	1700657	D	PFAM: peptidase M23B; KEGG: shm:Shewmr7_2290 peptidase M23B; peptidase M23B	1699794..1700657	Shewanella loihica PV-4	4922461
YP_001093601.1	CDS	Shew_1475	NC_009092.1	1700959	1701648	D	KEGG: sdn:Sden_3375 hypothetical protein; hypothetical protein	1700959..1701648	Shewanella loihica PV-4	4922895
YP_001093602.1	CDS	Shew_1476	NC_009092.1	1701706	1702344	D	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor	1701706..1702344	Shewanella loihica PV-4	4923475
YP_001093603.1	CDS	Shew_1477	NC_009092.1	1702337	1703086	D	TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: sdn:Sden_3373 anti-sigma factor ChrR , putative; anti-ECF sigma factor ChrR	1702337..1703086	Shewanella loihica PV-4	4924101
YP_001093604.1	CDS	Shew_1478	NC_009092.1	1703136	1704080	D	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: cps:CPS_1379 hypothetical protein; hypothetical protein	1703136..1704080	Shewanella loihica PV-4	4924102
YP_001093605.1	CDS	Shew_1479	NC_009092.1	1704077	1705513	D	PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: pha:PSHAb0453 putative deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase	1704077..1705513	Shewanella loihica PV-4	4923500
YP_001093606.1	CDS	Shew_1480	NC_009092.1	1705515	1705958	D	PFAM: protein of unknown function DUF1486; KEGG: sdn:Sden_3372 hypothetical protein; hypothetical protein	1705515..1705958	Shewanella loihica PV-4	4922038
YP_001093607.1	CDS	Shew_1481	NC_009092.1	1705968	1706690	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdn:Sden_3371 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	1705968..1706690	Shewanella loihica PV-4	4922446
YP_001093608.1	CDS	Shew_1482	NC_009092.1	1706687	1707940	D	PFAM: amine oxidase; KEGG: sdn:Sden_3370 amine oxidase; amine oxidase	1706687..1707940	Shewanella loihica PV-4	4924253
YP_001093609.1	CDS	Shew_1483	NC_009092.1	1707937	1708740	D	PFAM: protein of unknown function DUF1365; KEGG: sdn:Sden_3369 protein of unknown function DUF1365; hypothetical protein	1707937..1708740	Shewanella loihica PV-4	4924254
YP_001093610.1	CDS	Shew_1484	NC_009092.1	1708852	1710132	D	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_3368 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase	1708852..1710132	Shewanella loihica PV-4	4922614
YP_001093611.1	CDS	Shew_1485	NC_009092.1	1710110	1710619	D	KEGG: sdn:Sden_3367 hypothetical protein; hypothetical protein	1710110..1710619	Shewanella loihica PV-4	4921666
YP_001093612.1	CDS	Shew_1486	NC_009092.1	1710668	1711156	D	KEGG: sdn:Sden_3366 hypothetical protein; hypothetical protein	1710668..1711156	Shewanella loihica PV-4	4924343
YP_001093613.1	CDS	Shew_1487	NC_009092.1	1711153	1711686	D	KEGG: sdn:Sden_3365 hypothetical protein; hypothetical protein	1711153..1711686	Shewanella loihica PV-4	4923803
YP_001093614.1	CDS	Shew_1488	NC_009092.1	1711941	1713326	D	PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: vpa:VPA0635 putative oxidoreductase, oxygen dependent, FAD-dependent protein; FAD linked oxidase domain-containing protein	1711941..1713326	Shewanella loihica PV-4	4923804
YP_001093615.1	CDS	Shew_1489	NC_009092.1	1713445	1714035	R	PFAM: protein of unknown function DUF991; KEGG: sdn:Sden_2377 protein of unknown function DUF991; hypothetical protein	complement(1713445..1714035)	Shewanella loihica PV-4	4920643
YP_001093616.1	CDS	Shew_1490	NC_009092.1	1714110	1714694	R	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: shm:Shewmr7_2287 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein	complement(1714110..1714694)	Shewanella loihica PV-4	4922457
YP_001093617.1	CDS	Shew_1491	NC_009092.1	1714795	1715622	D	PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein	1714795..1715622	Shewanella loihica PV-4	4921514
YP_001093618.1	CDS	Shew_1492	NC_009092.1	1715681	1717168	D	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein	1715681..1717168	Shewanella loihica PV-4	4924005
YP_001093619.1	CDS	Shew_1493	NC_009092.1	1717338	1717607	R	KEGG: son:SO1921 hypothetical protein; hypothetical protein	complement(1717338..1717607)	Shewanella loihica PV-4	4924006
YP_001093620.1	CDS	Shew_1494	NC_009092.1	1717732	1718055	D	PFAM: uncharacterized conserved protein UCP029143; KEGG: vvu:VV20047 hypothetical protein; hypothetical protein	1717732..1718055	Shewanella loihica PV-4	4921972
YP_001093621.1	CDS	Shew_1495	NC_009092.1	1718148	1718813	D	KEGG: abo:ABO_1607 hypothetical protein; hypothetical protein	1718148..1718813	Shewanella loihica PV-4	4922225
YP_001093622.1	CDS	Shew_1496	NC_009092.1	1718829	1719362	R	KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein	complement(1718829..1719362)	Shewanella loihica PV-4	4920589
YP_001093623.1	CDS	Shew_1497	NC_009092.1	1719558	1720292	D	PFAM: protein of unknown function DUF1538; KEGG: sfr:Sfri_2271 protein of unknown function DUF1538; hypothetical protein	1719558..1720292	Shewanella loihica PV-4	4922356
YP_001093624.1	CDS	Shew_1498	NC_009092.1	1720292	1721080	D	PFAM: protein of unknown function DUF1538; KEGG: sfr:Sfri_2272 protein of unknown function DUF1538; hypothetical protein	1720292..1721080	Shewanella loihica PV-4	4922357
YP_001093625.1	CDS	Shew_1499	NC_009092.1	1721070	1721420	D	KEGG: sfr:Sfri_2273 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II	1721070..1721420	Shewanella loihica PV-4	4921875
YP_001093626.1	CDS	Shew_1500	NC_009092.1	1721417	1721821	D	PFAM: CBS domain containing protein; KEGG: sfr:Sfri_2274 putative signal-transduction protein with CBS domains; signal transduction protein	1721417..1721821	Shewanella loihica PV-4	4922028
YP_001093627.1	CDS	Shew_1501	NC_009092.1	1721906	1722262	R	PFAM: glutaredoxin; KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin	complement(1721906..1722262)	Shewanella loihica PV-4	4921958
YP_001093628.1	CDS	Shew_1502	NC_009092.1	1722475	1725834	R	PFAM: protein of unknown function DUF748; KEGG: she:Shewmr4_2416 protein of unknown function DUF748; hypothetical protein	complement(1722475..1725834)	Shewanella loihica PV-4	4920745
YP_001093629.1	CDS	Shew_1503	NC_009092.1	1726005	1726997	D	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mxa:MXAN_6919 ferredoxin reductase; oxidoreductase FAD-binding subunit	1726005..1726997	Shewanella loihica PV-4	4920746
YP_001093630.1	CDS	Shew_1504	NC_009092.1	1727129	1727560	D	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_2038 hypothetical protein; N-acetyltransferase GCN5	1727129..1727560	Shewanella loihica PV-4	4920723
YP_001093631.1	CDS	Shew_1505	NC_009092.1	1727632	1728336	D	KEGG: shm:Shewmr7_2484 hypothetical protein; hypothetical protein	1727632..1728336	Shewanella loihica PV-4	4924281
YP_001093632.1	CDS	Shew_1506	NC_009092.1	1728569	1728919	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_1598 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase	1728569..1728919	Shewanella loihica PV-4	4924221
YP_001093633.1	CDS	Shew_1507	NC_009092.1	1728922	1729269	D	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: vch:VC2669 5-carboxymethyl-2-hydroxymuconate delta isomerase, putative; 5-carboxymethyl-2-hydroxymuconate isomerase	1728922..1729269	Shewanella loihica PV-4	4922637
YP_001093634.1	CDS	Shew_1508	NC_009092.1	1729343	1730116	D	SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVUA0150 bacterial extracellular solute-binding protein, family 3; extracellular solute-binding protein	1729343..1730116	Shewanella loihica PV-4	4922638
YP_001093635.1	CDS	asnB	NC_009092.1	1730192	1731850	R	functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B	complement(1730192..1731850)	Shewanella loihica PV-4	4920788
YP_001093636.1	CDS	Shew_1510	NC_009092.1	1732190	1733851	R	PFAM: peptidase M28; KEGG: sfr:Sfri_1604 peptidase M28; peptidase M28	complement(1732190..1733851)	Shewanella loihica PV-4	4920667
YP_001093637.1	CDS	Shew_1511	NC_009092.1	1734073	1734831	R	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_2382 HAD-superfamily hydrolase, subfamily IIA; UMP phosphatase	complement(1734073..1734831)	Shewanella loihica PV-4	4924222
YP_001093638.1	CDS	purN	NC_009092.1	1735092	1735736	R	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase	complement(1735092..1735736)	Shewanella loihica PV-4	4924074
YP_001093639.1	CDS	Shew_1513	NC_009092.1	1735736	1736773	R	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase	complement(1735736..1736773)	Shewanella loihica PV-4	4924075
YP_001093640.1	CDS	upp	NC_009092.1	1736985	1737611	D	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase	1736985..1737611	Shewanella loihica PV-4	4922520
YP_001093641.1	CDS	Shew_1515	NC_009092.1	1737706	1739025	R	PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_2377 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC	complement(1737706..1739025)	Shewanella loihica PV-4	4924043
YP_001093642.1	CDS	Shew_1516	NC_009092.1	1739339	1739944	D	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_2448 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase	1739339..1739944	Shewanella loihica PV-4	4921711
YP_001093643.1	CDS	Shew_1517	NC_009092.1	1740080	1740661	R	TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB	complement(1740080..1740661)	Shewanella loihica PV-4	4921090
YP_001093644.1	CDS	Shew_1518	NC_009092.1	1740943	1741689	D	KEGG: sdn:Sden_0883 hypothetical protein; hypothetical protein	1740943..1741689	Shewanella loihica PV-4	4921091
YP_001093645.1	CDS	Shew_1519	NC_009092.1	1741841	1742857	D	KEGG: shm:Shewmr7_0087 hypothetical protein; hypothetical protein	1741841..1742857	Shewanella loihica PV-4	4922565
YP_001093646.1	CDS	Shew_1520	NC_009092.1	1742957	1743730	R	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T	complement(1742957..1743730)	Shewanella loihica PV-4	4922463
YP_001093647.1	CDS	Shew_1521	NC_009092.1	1743839	1744699	D	PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2446 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	1743839..1744699	Shewanella loihica PV-4	4922464
YP_001093648.1	CDS	Shew_1522	NC_009092.1	1745372	1747462	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: shm:Shewmr7_2445 prolyl oligopeptidase; prolyl oligopeptidase	1745372..1747462	Shewanella loihica PV-4	4922056
YP_001093649.1	CDS	Shew_1523	NC_009092.1	1747621	1748019	D	TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2444 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase	1747621..1748019	Shewanella loihica PV-4	4922057
YP_001093650.1	CDS	Shew_1524	NC_009092.1	1748009	1748698	D	PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel	1748009..1748698	Shewanella loihica PV-4	4924141
YP_001093651.1	CDS	Shew_1525	NC_009092.1	1748698	1749132	D	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shm:Shewmr7_2442 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR	1748698..1749132	Shewanella loihica PV-4	4922748
YP_001093652.1	CDS	Shew_1526	NC_009092.1	1749136	1750071	D	PFAM: TolA family protein; KEGG: sfr:Sfri_1461 TolA family protein; TolA family protein	1749136..1750071	Shewanella loihica PV-4	4923143
YP_001093653.1	CDS	tolB	NC_009092.1	1750081	1751406	D	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB	1750081..1751406	Shewanella loihica PV-4	4924145
YP_001093654.1	CDS	Shew_1528	NC_009092.1	1751441	1751983	D	TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2439 OmpA/MotB domain protein; OmpA domain-containing protein	1751441..1751983	Shewanella loihica PV-4	4924146
YP_001093655.1	CDS	Shew_1529	NC_009092.1	1752003	1752725	D	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2438 hypothetical protein; hypothetical protein	1752003..1752725	Shewanella loihica PV-4	4923265
YP_001093656.1	CDS	Shew_1530	NC_009092.1	1754711	1755853	D	PFAM: porin; KEGG: she:Shewmr4_2365 hypothetical protein; porin	1754711..1755853	Shewanella loihica PV-4	4921918
YP_001093657.1	CDS	grxA	NC_009092.1	1755907	1756164	R	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin	complement(1755907..1756164)	Shewanella loihica PV-4	4922684
YP_001093658.1	CDS	Shew_1532	NC_009092.1	1756230	1757969	R	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2435 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit	complement(1756230..1757969)	Shewanella loihica PV-4	4921701
YP_001093659.1	CDS	Shew_1533	NC_009092.1	1758093	1760045	R	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase	complement(1758093..1760045)	Shewanella loihica PV-4	4921702
YP_001093660.1	CDS	Shew_1534	NC_009092.1	1760224	1763646	D	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_2361 multi-sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase	1760224..1763646	Shewanella loihica PV-4	4921355
YP_001093661.1	CDS	Shew_1535	NC_009092.1	1763680	1764291	D	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: vch:VCA1004 hypothetical protein; fumarylacetoacetate (FAA) hydrolase	1763680..1764291	Shewanella loihica PV-4	4920945
YP_001093662.1	CDS	Shew_1536	NC_009092.1	1764380	1765006	D	KEGG: dps:DP1720 probable chloramphenicol acetyltransferase; putative chloramphenicol acetyltransferase	1764380..1765006	Shewanella loihica PV-4	4922683
YP_001093663.1	CDS	Shew_1537	NC_009092.1	1765328	1766617	D	PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2193 FAD dependent oxidoreductase; FAD dependent oxidoreductase	1765328..1766617	Shewanella loihica PV-4	4921536
YP_001093664.1	CDS	Shew_1538	NC_009092.1	1766794	1767039	D	KEGG: pat:Patl_1355 hypothetical protein; hypothetical protein	1766794..1767039	Shewanella loihica PV-4	4921537
YP_001093665.1	CDS	Shew_1539	NC_009092.1	1767142	1768011	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1785 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(1767142..1768011)	Shewanella loihica PV-4	4922094
YP_001093666.1	CDS	Shew_1540	NC_009092.1	1768212	1769342	D	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_2191 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase	1768212..1769342	Shewanella loihica PV-4	4922268
YP_001093667.1	CDS	Shew_1541	NC_009092.1	1769403	1770239	D	PFAM: putative esterase; KEGG: sfr:Sfri_4058 carboxylesterase; carboxylesterase	1769403..1770239	Shewanella loihica PV-4	4923753
YP_001093668.1	CDS	Shew_1542	NC_009092.1	1770262	1771800	R	PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRB0490 hypothetical protein; major facilitator superfamily transporter	complement(1770262..1771800)	Shewanella loihica PV-4	4923181
YP_001093669.1	CDS	Shew_1543	NC_009092.1	1771815	1772873	R	PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB0491 hypothetical secretion protein; secretion protein HlyD family protein	complement(1771815..1772873)	Shewanella loihica PV-4	4923182
YP_001093670.1	CDS	Shew_1544	NC_009092.1	1772921	1773580	D	PFAM: regulatory protein, TetR; KEGG: ppr:PBPRB0492 hypothetical protein; TetR family transcriptional regulator	1772921..1773580	Shewanella loihica PV-4	4923779
YP_001093671.1	CDS	Shew_1545	NC_009092.1	1773734	1774393	R	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_1663 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator	complement(1773734..1774393)	Shewanella loihica PV-4	4920977
YP_001093672.1	CDS	Shew_1546	NC_009092.1	1774644	1775069	R	PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein	complement(1774644..1775069)	Shewanella loihica PV-4	4922774
YP_001093673.1	CDS	Shew_1547	NC_009092.1	1775223	1776284	R	tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase	complement(1775223..1776284)	Shewanella loihica PV-4	4921437
YP_001093674.1	CDS	Shew_1548	NC_009092.1	1776462	1777274	R	PFAM: protein of unknown function DUF299; KEGG: sfr:Sfri_2298 protein of unknown function DUF299; hypothetical protein	complement(1776462..1777274)	Shewanella loihica PV-4	4921438
YP_001093675.1	CDS	Shew_1549	NC_009092.1	1777401	1779770	D	catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase	1777401..1779770	Shewanella loihica PV-4	4921835
YP_001093676.1	CDS	Shew_1550	NC_009092.1	1779880	1782960	D	PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein	1779880..1782960	Shewanella loihica PV-4	4920835
YP_001093677.1	CDS	Shew_1551	NC_009092.1	1783023	1783472	D	KEGG: sdn:Sden_2007 hypothetical protein; hypothetical protein	1783023..1783472	Shewanella loihica PV-4	4920998
YP_001093678.1	CDS	Shew_1552	NC_009092.1	1783596	1784012	D	PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_1670 transcriptional regulator, MarR family; MarR family transcriptional regulator	1783596..1784012	Shewanella loihica PV-4	4922496
YP_001093679.1	CDS	Shew_1553	NC_009092.1	1784052	1784534	D	KEGG: bpa:BPP2691 hypothetical protein; hypothetical protein	1784052..1784534	Shewanella loihica PV-4	4922497
YP_001093680.1	CDS	Shew_1554	NC_009092.1	1784670	1785014	R	KEGG: shm:Shewmr7_1672 hypothetical protein; hypothetical protein	complement(1784670..1785014)	Shewanella loihica PV-4	4922747
YP_001093681.1	CDS	Shew_1555	NC_009092.1	1785277	1786308	R	PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sdn:Sden_1823 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase	complement(1785277..1786308)	Shewanella loihica PV-4	4922892
YP_001093682.1	CDS	Shew_1556	NC_009092.1	1786565	1787014	D	KEGG: shm:Shewmr7_1674 hypothetical protein; hypothetical protein	1786565..1787014	Shewanella loihica PV-4	4923690
YP_001093683.1	CDS	Shew_1557	NC_009092.1	1787202	1788362	R	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: sfr:Sfri_2263 cupin 4 family protein; cupin 4 family protein	complement(1787202..1788362)	Shewanella loihica PV-4	4921667
YP_001093684.1	CDS	Shew_1558	NC_009092.1	1788546	1789916	R	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase	complement(1788546..1789916)	Shewanella loihica PV-4	4921668
YP_001093685.1	CDS	Shew_1559	NC_009092.1	1789949	1790566	R	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein	complement(1789949..1790566)	Shewanella loihica PV-4	4921106
YP_001093686.1	CDS	mnmA	NC_009092.1	1790570	1791685	R	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA	complement(1790570..1791685)	Shewanella loihica PV-4	4921752
YP_001093687.1	CDS	Shew_1561	NC_009092.1	1791863	1792312	R	PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase	complement(1791863..1792312)	Shewanella loihica PV-4	4921863
YP_001093688.1	CDS	Shew_1562	NC_009092.1	1792324	1793118	R	PFAM: pseudouridine synthase; KEGG: sfr:Sfri_2258 pseudouridine synthase, Rsu; pseudouridylate synthase	complement(1792324..1793118)	Shewanella loihica PV-4	4921864
YP_001093689.1	CDS	Shew_1563	NC_009092.1	1793391	1795610	D	KEGG: shm:Shewmr7_1681 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase	1793391..1795610	Shewanella loihica PV-4	4921977
YP_001093690.1	CDS	Shew_1564	NC_009092.1	1795736	1795942	R	KEGG: shm:Shewmr7_1721 cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein	complement(1795736..1795942)	Shewanella loihica PV-4	4923209
YP_001093691.1	CDS	clpS	NC_009092.1	1796187	1796495	D	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS	1796187..1796495	Shewanella loihica PV-4	4923443
YP_001093692.1	CDS	Shew_1566	NC_009092.1	1796531	1798789	D	KEGG: shm:Shewmr7_1723 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA	1796531..1798789	Shewanella loihica PV-4	4923691
YP_001093693.1	CDS	infA	NC_009092.1	1799009	1799227	R	stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1	complement(1799009..1799227)	Shewanella loihica PV-4	4923692
YP_001093694.1	CDS	Shew_1568	NC_009092.1	1799358	1800062	R	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase	complement(1799358..1800062)	Shewanella loihica PV-4	4923783
YP_001093695.1	CDS	aat	NC_009092.1	1800052	1800762	R	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase	complement(1800052..1800762)	Shewanella loihica PV-4	4922593
YP_001093696.1	CDS	Shew_1570	NC_009092.1	1800815	1801306	D	PFAM: 17 kDa surface antigen; KEGG: she:Shewmr4_1652 17 kDa surface antigen; 17 kDa surface antigen	1800815..1801306	Shewanella loihica PV-4	4924307
YP_001093697.1	CDS	Shew_1571	NC_009092.1	1801435	1801794	R	KEGG: sfr:Sfri_2249 hypothetical protein; hypothetical protein	complement(1801435..1801794)	Shewanella loihica PV-4	4924308
YP_001093698.1	CDS	Shew_1572	NC_009092.1	1802005	1802757	D	PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein	1802005..1802757	Shewanella loihica PV-4	4924348
YP_001093699.1	CDS	metG	NC_009092.1	1802861	1804882	R	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase	complement(1802861..1804882)	Shewanella loihica PV-4	4924354
YP_001093700.1	CDS	Shew_1574	NC_009092.1	1805042	1806154	D	KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein	1805042..1806154	Shewanella loihica PV-4	4923835
YP_001093701.1	CDS	Shew_1575	NC_009092.1	1806167	1806802	D	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase	1806167..1806802	Shewanella loihica PV-4	4924405
YP_001093702.1	CDS	dcd	NC_009092.1	1806830	1807414	D	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase	1806830..1807414	Shewanella loihica PV-4	4924406
YP_001093703.1	CDS	Shew_1577	NC_009092.1	1807414	1808247	D	PFAM: aminotransferase, class IV; KEGG: shm:Shewmr7_1734 aminotransferase, class IV; aminotransferase, class IV	1807414..1808247	Shewanella loihica PV-4	4922957
YP_001093704.1	CDS	Shew_1578	NC_009092.1	1808244	1809251	D	PFAM: aminodeoxychorismate lyase; KEGG: shm:Shewmr7_1735 aminodeoxychorismate lyase; aminodeoxychorismate lyase	1808244..1809251	Shewanella loihica PV-4	4922445
YP_001093705.1	CDS	tmk	NC_009092.1	1809248	1809880	D	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase	1809248..1809880	Shewanella loihica PV-4	4922373
YP_001093706.1	CDS	Shew_1580	NC_009092.1	1809898	1810812	D	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta'	1809898..1810812	Shewanella loihica PV-4	4922374
YP_001093707.1	CDS	Shew_1581	NC_009092.1	1810819	1811145	D	PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_1738 type IV pilus biogenesis protein PilZ; type IV pilus assembly PilZ	1810819..1811145	Shewanella loihica PV-4	4922354
YP_001093708.1	CDS	Shew_1582	NC_009092.1	1811190	1811978	D	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_1739 hydrolase, TatD family; TatD family hydrolase	1811190..1811978	Shewanella loihica PV-4	4923710
YP_001093709.1	CDS	yebU	NC_009092.1	1812330	1813790	R	in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF	complement(1812330..1813790)	Shewanella loihica PV-4	4923725
YP_001093710.1	CDS	Shew_1584	NC_009092.1	1813879	1815105	D	PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1666 nucleoside recognition domain protein; nucleoside recognition domain-containing protein	1813879..1815105	Shewanella loihica PV-4	4921017
YP_001093711.1	CDS	Shew_1585	NC_009092.1	1815221	1816120	R	KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein	complement(1815221..1816120)	Shewanella loihica PV-4	4921018
YP_001093712.1	CDS	Shew_1586	NC_009092.1	1816343	1816714	R	PFAM: diacylglycerol kinase; KEGG: sfr:Sfri_1483 diacylglycerol kinase; diacylglycerol kinase	complement(1816343..1816714)	Shewanella loihica PV-4	4921168
YP_001093713.1	CDS	Shew_1587	NC_009092.1	1817076	1817888	D	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase	1817076..1817888	Shewanella loihica PV-4	4922440
YP_001093714.1	CDS	Shew_1588	NC_009092.1	1817918	1818382	D	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: she:Shewmr4_2189 protein tyrosine phosphatase; protein tyrosine phosphatase	1817918..1818382	Shewanella loihica PV-4	4922939
YP_001093715.1	CDS	rbgA	NC_009092.1	1818553	1819494	R	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase	complement(1818553..1819494)	Shewanella loihica PV-4	4922940
YP_001093716.1	CDS	Shew_1590	NC_009092.1	1819603	1820442	R	PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_2262 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase	complement(1819603..1820442)	Shewanella loihica PV-4	4923297
YP_001093717.1	CDS	Shew_1591	NC_009092.1	1820734	1821651	D	this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein	1820734..1821651	Shewanella loihica PV-4	4923688
YP_001093718.1	CDS	Shew_1592	NC_009092.1	1821719	1823278	R	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdn:Sden_2303 sulphate transporter; sulfate transporter	complement(1821719..1823278)	Shewanella loihica PV-4	4923757
YP_001093719.1	CDS	Shew_1593	NC_009092.1	1823406	1826792	R	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: shm:Shewmr7_2475 ribonuclease, Rne/Rng family; ribonuclease	complement(1823406..1826792)	Shewanella loihica PV-4	4921198
YP_001093720.1	CDS	Shew_1594	NC_009092.1	1827362	1828351	D	KEGG: shm:Shewmr7_2474 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase	1827362..1828351	Shewanella loihica PV-4	4921199
YP_001093721.1	CDS	Shew_1595	NC_009092.1	1828348	1829007	D	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfr:Sfri_1492 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase	1828348..1829007	Shewanella loihica PV-4	4922598
YP_001093722.1	CDS	Shew_1596	NC_009092.1	1828988	1830361	R	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: mca:MCA0985 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase	complement(1828988..1830361)	Shewanella loihica PV-4	4922025
YP_001093723.1	CDS	Shew_1597	NC_009092.1	1830705	1831301	R	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein	complement(1830705..1831301)	Shewanella loihica PV-4	4921924
YP_001093724.1	CDS	Shew_1598	NC_009092.1	1831732	1832256	D	PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein; hypothetical protein	1831732..1832256	Shewanella loihica PV-4	4921925
YP_001093725.1	CDS	rpmF	NC_009092.1	1832274	1832444	D	some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32	1832274..1832444	Shewanella loihica PV-4	4923397
YP_001093726.1	CDS	Shew_1600	NC_009092.1	1832459	1833487	D	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX	1832459..1833487	Shewanella loihica PV-4	4921955
YP_001093727.1	CDS	Shew_1601	NC_009092.1	1833497	1834456	D	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase	1833497..1834456	Shewanella loihica PV-4	4921974
YP_001093728.1	CDS	Shew_1602	NC_009092.1	1834503	1835429	D	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: she:Shewmr4_2397 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase	1834503..1835429	Shewanella loihica PV-4	4921872
YP_001093729.1	CDS	Shew_1603	NC_009092.1	1835440	1836186	D	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_2466 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase	1835440..1836186	Shewanella loihica PV-4	4921873
YP_001093730.1	CDS	acpP	NC_009092.1	1836347	1836580	D	carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein	1836347..1836580	Shewanella loihica PV-4	4921290
YP_001093731.1	CDS	Shew_1605	NC_009092.1	1836749	1837990	D	PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase	1836749..1837990	Shewanella loihica PV-4	4923238
YP_001093732.1	CDS	Shew_1606	NC_009092.1	1838176	1838508	D	KEGG: she:Shewmr4_2393 hypothetical protein; hypothetical protein	1838176..1838508	Shewanella loihica PV-4	4921697
YP_001093733.1	CDS	Shew_1607	NC_009092.1	1838586	1839074	D	PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein	1838586..1839074	Shewanella loihica PV-4	4921698
YP_001093734.1	CDS	Shew_1608	NC_009092.1	1839098	1840681	D	PFAM: carbohydrate kinase, FGGY; KEGG: rfr:Rfer_2334 carbohydrate kinase, FGGY; carbohydrate kinase	1839098..1840681	Shewanella loihica PV-4	4922054
YP_001093735.1	CDS	Shew_1609	NC_009092.1	1840705	1841580	D	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: she:Shewmr4_2391 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase	1840705..1841580	Shewanella loihica PV-4	4923392
YP_001093736.1	CDS	Shew_1610	NC_009092.1	1841674	1842564	R	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase	complement(1841674..1842564)	Shewanella loihica PV-4	4921981
YP_001093737.1	CDS	sbcB	NC_009092.1	1842682	1844130	R	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I	complement(1842682..1844130)	Shewanella loihica PV-4	4924365
YP_001093738.1	CDS	Shew_1612	NC_009092.1	1844259	1845077	D	KEGG: she:Shewmr4_2409 hypothetical protein; hypothetical protein	1844259..1845077	Shewanella loihica PV-4	4924366
YP_001093739.1	CDS	rrmA	NC_009092.1	1845113	1845925	D	methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A	1845113..1845925	Shewanella loihica PV-4	4922460
YP_001093740.1	CDS	Shew_1614	NC_009092.1	1846228	1846434	D	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2477 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein	1846228..1846434	Shewanella loihica PV-4	4922779
YP_001093741.1	CDS	Shew_1615	NC_009092.1	1846913	1847818	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_1627 ABC transporter-related protein; ABC transporter-like protein	complement(1846913..1847818)	Shewanella loihica PV-4	4922905
YP_001093742.1	CDS	Shew_1616	NC_009092.1	1847815	1848669	R	KEGG: son:SO1866 hypothetical protein; hypothetical protein	complement(1847815..1848669)	Shewanella loihica PV-4	4922906
YP_001093743.1	CDS	Shew_1617	NC_009092.1	1848726	1849373	R	PFAM: protein of unknown function DUF480; KEGG: she:Shewmr4_1554 protein of unknown function DUF480; hypothetical protein	complement(1848726..1849373)	Shewanella loihica PV-4	4923400
YP_001093744.1	CDS	Shew_1618	NC_009092.1	1849473	1850306	R	KEGG: she:Shewmr4_1555 hypothetical protein; hypothetical protein	complement(1849473..1850306)	Shewanella loihica PV-4	4923148
YP_001093745.1	CDS	Shew_1619	NC_009092.1	1850856	1852769	D	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase	1850856..1852769	Shewanella loihica PV-4	4922250
YP_001093746.1	CDS	Shew_1620	NC_009092.1	1853026	1853946	D	PFAM: S-adenosylmethionine decarboxylase; KEGG: sfr:Sfri_1699 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase	1853026..1853946	Shewanella loihica PV-4	4922061
YP_001093747.1	CDS	Shew_1621	NC_009092.1	1853975	1854898	D	catalyzes the formation of putrescine from agmatine; agmatinase	1853975..1854898	Shewanella loihica PV-4	4922062
YP_001093748.1	CDS	Shew_1622	NC_009092.1	1854926	1855582	D	KEGG: sfr:Sfri_1702 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase	1854926..1855582	Shewanella loihica PV-4	4921539
YP_001093749.1	CDS	Shew_1623	NC_009092.1	1855648	1856424	R	KEGG: shm:Shewmr7_1661 hypothetical protein; hypothetical protein	complement(1855648..1856424)	Shewanella loihica PV-4	4922772
YP_001093750.1	CDS	cysB	NC_009092.1	1856663	1857637	D	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB	1856663..1857637	Shewanella loihica PV-4	4923251
YP_001093751.1	CDS	Shew_1625	NC_009092.1	1857730	1859106	R	KEGG: shm:Shewmr7_1804 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1	complement(1857730..1859106)	Shewanella loihica PV-4	4923252
YP_001093752.1	CDS	Shew_1626	NC_009092.1	1859477	1860478	D	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase	1859477..1860478	Shewanella loihica PV-4	4922156
YP_001093753.1	CDS	Shew_1627	NC_009092.1	1860554	1861096	D	PFAM: protein of unknown function UPF0227; KEGG: shm:Shewmr7_1806 protein of unknown function UPF0227; hypothetical protein	1860554..1861096	Shewanella loihica PV-4	4922414
YP_001093754.1	CDS	Shew_1628	NC_009092.1	1861653	1861922	D	catalyzes the hydrolysis of acylphosphate; acylphosphatase	1861653..1861922	Shewanella loihica PV-4	4923207
YP_001093755.1	CDS	Shew_1629	NC_009092.1	1861962	1862900	R	KEGG: sfr:Sfri_2400 hypothetical protein; hypothetical protein	complement(1861962..1862900)	Shewanella loihica PV-4	4923472
YP_001093756.1	CDS	Shew_1630	NC_009092.1	1862893	1866375	R	KEGG: she:Shewmr4_1730 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor	complement(1862893..1866375)	Shewanella loihica PV-4	4923473
YP_001093757.1	CDS	Shew_1631	NC_009092.1	1866451	1867032	R	KEGG: shm:Shewmr7_1811 hypothetical protein; hypothetical protein	complement(1866451..1867032)	Shewanella loihica PV-4	4921664
YP_001093758.1	CDS	Shew_1632	NC_009092.1	1867128	1868360	D	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_1812 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein	1867128..1868360	Shewanella loihica PV-4	4922100
YP_001093759.1	CDS	Shew_1633	NC_009092.1	1868364	1869065	D	KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-related protein; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein	1868364..1869065	Shewanella loihica PV-4	4922330
YP_001093760.1	CDS	Shew_1634	NC_009092.1	1869062	1870315	D	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative; LolC/E family lipoprotein releasing system, transmembrane protein	1869062..1870315	Shewanella loihica PV-4	4922331
YP_001093761.1	CDS	Shew_1635	NC_009092.1	1870343	1871698	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; KEGG: vch:VCA0960 GGDEF family protein; diguanylate cyclase	complement(1870343..1871698)	Shewanella loihica PV-4	4922117
YP_001093762.1	CDS	Shew_1636	NC_009092.1	1872031	1872537	R	KEGG: shm:Shewmr7_2494 hypothetical protein; hypothetical protein	complement(1872031..1872537)	Shewanella loihica PV-4	4922777
YP_001093763.1	CDS	Shew_1637	NC_009092.1	1872569	1874854	D	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: she:Shewmr4_2423 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2	1872569..1874854	Shewanella loihica PV-4	4923393
YP_001093764.1	CDS	Shew_1638	NC_009092.1	1874888	1876702	D	KEGG: shm:Shewmr7_2492 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter-related protein; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA	1874888..1876702	Shewanella loihica PV-4	4923232
YP_001093765.1	CDS	lpxK	NC_009092.1	1876708	1877724	D	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase	1876708..1877724	Shewanella loihica PV-4	4923233
YP_001093766.1	CDS	Shew_1640	NC_009092.1	1877726	1877905	D	PFAM: protein of unknown function DUF343; KEGG: shm:Shewmr7_2490 protein of unknown function DUF343; hypothetical protein	1877726..1877905	Shewanella loihica PV-4	4922600
YP_001093767.1	CDS	Shew_1641	NC_009092.1	1878141	1878860	D	KEGG: sfr:Sfri_2385 Mn2+-dependent serine/threonine protein kinase; Mn2+-dependent serine/threonine protein kinase	1878141..1878860	Shewanella loihica PV-4	4923681
YP_001093768.1	CDS	Shew_1642	NC_009092.1	1879360	1882428	D	PFAM: Peptidase M11, gametolysin; KEGG: vpa:VPA0993 hypothetical protein; peptidase M11, gametolysin	1879360..1882428	Shewanella loihica PV-4	4923972
YP_001093769.1	CDS	Shew_1643	NC_009092.1	1882512	1884800	R	KEGG: vpa:VPA0992 hypothetical protein; hypothetical protein	complement(1882512..1884800)	Shewanella loihica PV-4	4923973
YP_001093770.1	CDS	Shew_1644	NC_009092.1	1885352	1886140	R	PFAM: DSBA oxidoreductase; KEGG: vpa:VPA0994 hypothetical protein; DSBA oxidoreductase	complement(1885352..1886140)	Shewanella loihica PV-4	4922362
YP_001093771.1	CDS	Shew_1645	NC_009092.1	1886174	1887544	R	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: shm:Shewmr7_3505 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator	complement(1886174..1887544)	Shewanella loihica PV-4	4921151
YP_001093772.1	CDS	Shew_1646	NC_009092.1	1888021	1888899	R	PFAM: beta-lactamase domain protein; KEGG: sdn:Sden_2195 beta-lactamase-like protein; beta-lactamase domain-containing protein	complement(1888021..1888899)	Shewanella loihica PV-4	4920978
YP_001093773.1	CDS	Shew_1647	NC_009092.1	1889011	1892058	R	PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1627 acriflavin resistance protein; acriflavin resistance protein	complement(1889011..1892058)	Shewanella loihica PV-4	4921206
YP_001093774.1	CDS	Shew_1648	NC_009092.1	1892055	1895303	R	PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1628 acriflavin resistance protein; acriflavin resistance protein	complement(1892055..1895303)	Shewanella loihica PV-4	4921207
YP_001093775.1	CDS	Shew_1649	NC_009092.1	1895318	1896382	R	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: she:Shewmr4_1629 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	complement(1895318..1896382)	Shewanella loihica PV-4	4922118
YP_001093776.1	CDS	gltA	NC_009092.1	1897131	1898417	R	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase	complement(1897131..1898417)	Shewanella loihica PV-4	4921802
YP_001093777.1	CDS	Shew_1651	NC_009092.1	1898830	1899225	D	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: shm:Shewmr7_1706 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit	1898830..1899225	Shewanella loihica PV-4	4923270
YP_001093778.1	CDS	Shew_1652	NC_009092.1	1899219	1899566	D	KEGG: she:Shewmr4_1632 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; putative succinate dehydrogenase, hydrophobic subunit	1899219..1899566	Shewanella loihica PV-4	4923271
YP_001093779.1	CDS	sdhA	NC_009092.1	1899567	1901333	D	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit	1899567..1901333	Shewanella loihica PV-4	4921622
YP_001093780.1	CDS	sdhB	NC_009092.1	1901344	1902051	D	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit	1901344..1902051	Shewanella loihica PV-4	4922731
YP_001093781.1	CDS	sucA	NC_009092.1	1902267	1905089	D	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component	1902267..1905089	Shewanella loihica PV-4	4921041
YP_001093782.1	CDS	Shew_1656	NC_009092.1	1905122	1906312	D	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1711 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase	1905122..1906312	Shewanella loihica PV-4	4920807
YP_001093783.1	CDS	sucC	NC_009092.1	1906416	1907582	D	catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta	1906416..1907582	Shewanella loihica PV-4	4920808
YP_001093784.1	CDS	Shew_1658	NC_009092.1	1907582	1908454	D	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sdn:Sden_2180 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha	1907582..1908454	Shewanella loihica PV-4	4921421
YP_001093785.1	CDS	Shew_1659	NC_009092.1	1908540	1910213	R	PFAM: ferredoxin-dependent glutamate synthase; KEGG: cps:CPS_3206 glutamate synthase domain protein; ferredoxin-dependent glutamate synthase	complement(1908540..1910213)	Shewanella loihica PV-4	4921954
YP_001093786.1	CDS	Shew_1660	NC_009092.1	1910434	1910934	D	PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1715 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	1910434..1910934	Shewanella loihica PV-4	4922221
YP_001093787.1	CDS	fur	NC_009092.1	1911025	1911456	R	negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator	complement(1911025..1911456)	Shewanella loihica PV-4	4922222
YP_001093788.1	CDS	Shew_1662	NC_009092.1	1911767	1912513	D	Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase	1911767..1912513	Shewanella loihica PV-4	4922716
YP_001093789.1	CDS	Shew_1663	NC_009092.1	1912571	1913092	D	KEGG: she:Shewmr4_1643 hypothetical protein; hypothetical protein	1912571..1913092	Shewanella loihica PV-4	4923419
YP_001093790.1	CDS	Shew_1664	NC_009092.1	1913133	1913420	D	KEGG: ppr:PBPRB1101 hypothetical protein; hypothetical protein	1913133..1913420	Shewanella loihica PV-4	4923529
YP_001093791.1	CDS	Shew_1665	NC_009092.1	1913516	1914202	D	PFAM: peptidase S51, dipeptidase E; KEGG: sbo:SBO_4042 peptidase E; peptidase S51, dipeptidase E	1913516..1914202	Shewanella loihica PV-4	4924008
YP_001093792.1	CDS	Shew_1666	NC_009092.1	1914214	1915551	R	PFAM: putative esterase; KEGG: sdn:Sden_0711 putative esterase; putative esterase	complement(1914214..1915551)	Shewanella loihica PV-4	4924009
YP_001093793.1	CDS	Shew_1667	NC_009092.1	1915940	1917130	D	KEGG: sdn:Sden_1943 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; acetyl-CoA acetyltransferase	1915940..1917130	Shewanella loihica PV-4	4920549
YP_001093794.1	CDS	Shew_1668	NC_009092.1	1917266	1918771	D	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase	1917266..1918771	Shewanella loihica PV-4	4920541
YP_001093795.1	CDS	Shew_1669	NC_009092.1	1918934	1920091	D	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2662 acyl-CoA dehydrogenase domain protein; butyryl-CoA dehydrogenase	1918934..1920091	Shewanella loihica PV-4	4920536
YP_001093796.1	CDS	Shew_1670	NC_009092.1	1920107	1920880	D	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase	1920107..1920880	Shewanella loihica PV-4	4920537
YP_001093797.1	CDS	Shew_1671	NC_009092.1	1920880	1922010	D	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2660 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	1920880..1922010	Shewanella loihica PV-4	4920529
YP_001093798.1	CDS	Shew_1672	NC_009092.1	1922046	1922945	D	KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase	1922046..1922945	Shewanella loihica PV-4	4920521
YP_001093799.1	CDS	fabG	NC_009092.1	1922950	1923708	D	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase	1922950..1923708	Shewanella loihica PV-4	4920516
YP_001093800.1	CDS	Shew_1674	NC_009092.1	1923822	1924079	D	KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein	1923822..1924079	Shewanella loihica PV-4	4920506
YP_001093801.1	CDS	Shew_1675	NC_009092.1	1924089	1926140	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: shm:Shewmr7_2656 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase	1924089..1926140	Shewanella loihica PV-4	4920507
YP_001093802.1	CDS	Shew_1676	NC_009092.1	1926354	1927949	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2586 ABC transporter-related protein; ABC transporter-like protein	1926354..1927949	Shewanella loihica PV-4	4920498
YP_001093803.1	CDS	Shew_1677	NC_009092.1	1928104	1929465	R	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: cps:CPS_4956 cytosol aminopeptidase family protein; leucyl aminopeptidase	complement(1928104..1929465)	Shewanella loihica PV-4	4920490
YP_001093804.1	CDS	Shew_1678	NC_009092.1	1929538	1929966	R	KEGG: pha:PSHAb0301 hypothetical protein; hypothetical protein	complement(1929538..1929966)	Shewanella loihica PV-4	4920482
YP_001093805.1	CDS	Shew_1679	NC_009092.1	1930027	1930584	R	PFAM: regulatory protein, TetR; KEGG: vpa:VPA1562 putative transcriptional regulator; TetR family transcriptional regulator	complement(1930027..1930584)	Shewanella loihica PV-4	4920483
YP_001093806.1	CDS	Shew_1680	NC_009092.1	1930713	1931183	D	PFAM: HPP family protein+B94; KEGG: vpa:VPA1561 hypothetical protein; HPP family protein	1930713..1931183	Shewanella loihica PV-4	4920477
YP_001093807.1	CDS	Shew_1681	NC_009092.1	1931402	1932892	D	KEGG: tcx:Tcr_0379 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase	1931402..1932892	Shewanella loihica PV-4	4920472
YP_001093808.1	CDS	Shew_1682	NC_009092.1	1932935	1933699	R	PFAM: ribonuclease H; KEGG: sdn:Sden_0758 ribonuclease H; ribonuclease H	complement(1932935..1933699)	Shewanella loihica PV-4	4920463
YP_001093809.1	CDS	Shew_1683	NC_009092.1	1933730	1934305	R	PFAM: protein of unknown function DUF1415; KEGG: sfr:Sfri_1353 protein of unknown function DUF1415; hypothetical protein	complement(1933730..1934305)	Shewanella loihica PV-4	4920453
YP_001093810.1	CDS	Shew_1684	NC_009092.1	1934337	1934933	R	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sdn:Sden_2232 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	complement(1934337..1934933)	Shewanella loihica PV-4	4920454
YP_001093811.1	CDS	Shew_1685	NC_009092.1	1935281	1938187	D	PFAM: peptidase domain protein; Peptidase M9A, collagenase C-terminal domain protein; Peptidase M9, N-terminal domain; KEGG: son:SO0639 collagenase family; collagenase	1935281..1938187	Shewanella loihica PV-4	4920448
YP_001093812.1	CDS	Shew_1686	NC_009092.1	1938497	1939174	D	KEGG: shm:Shewmr7_2633 hypothetical protein; hypothetical protein	1938497..1939174	Shewanella loihica PV-4	4920441
YP_001093813.1	CDS	Shew_1687	NC_009092.1	1939503	1940006	D	KEGG: vpa:VPA0219 hypothetical protein; hypothetical protein	1939503..1940006	Shewanella loihica PV-4	4920432
YP_001093814.1	CDS	Shew_1688	NC_009092.1	1940184	1942316	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_0392 TonB-dependent receptor, plug; TonB-dependent receptor	complement(1940184..1942316)	Shewanella loihica PV-4	4920433
YP_001093815.1	CDS	Shew_1689	NC_009092.1	1942663	1943484	R	KEGG: shm:Shewmr7_2631 hypothetical protein; hypothetical protein	complement(1942663..1943484)	Shewanella loihica PV-4	4920425
YP_001093816.1	CDS	Shew_1690	NC_009092.1	1944445	1945332	D	hypothetical protein	1944445..1945332	Shewanella loihica PV-4	4920420
YP_001093817.1	CDS	Shew_1691	NC_009092.1	1945421	1945909	D	hypothetical protein	1945421..1945909	Shewanella loihica PV-4	4920602
YP_001093818.1	CDS	Shew_1692	NC_009092.1	1946022	1946534	D	hypothetical protein	1946022..1946534	Shewanella loihica PV-4	4920616
YP_001093819.1	CDS	Shew_1693	NC_009092.1	1946595	1947542	D	KEGG: sma:SAV3995 hypothetical protein; hypothetical protein	1946595..1947542	Shewanella loihica PV-4	4920617
YP_001093820.1	CDS	Shew_1694	NC_009092.1	1948145	1948657	D	hypothetical protein	1948145..1948657	Shewanella loihica PV-4	4920655
YP_001093821.1	CDS	Shew_1695	NC_009092.1	1948750	1949097	D	hypothetical protein	1948750..1949097	Shewanella loihica PV-4	4920690
YP_001093822.1	CDS	Shew_1696	NC_009092.1	1949748	1950644	D	PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_2629 protein of unknown function DUF6, transmembrane; hypothetical protein	1949748..1950644	Shewanella loihica PV-4	4920724
YP_001093823.1	CDS	Shew_1697	NC_009092.1	1950696	1951193	R	PFAM: amino acid-binding ACT domain protein; KEGG: she:Shewmr4_2561 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein	complement(1950696..1951193)	Shewanella loihica PV-4	4920725
YP_001093824.1	CDS	Shew_1698	NC_009092.1	1951473	1953731	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2560 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	1951473..1953731	Shewanella loihica PV-4	4920787
YP_001093825.1	CDS	Shew_1699	NC_009092.1	1953792	1955444	D	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2626 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease	1953792..1955444	Shewanella loihica PV-4	4920784
YP_001093826.1	CDS	Shew_1700	NC_009092.1	1955522	1956340	D	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein	1955522..1956340	Shewanella loihica PV-4	4920819
YP_001093827.1	CDS	Shew_1701	NC_009092.1	1956389	1957090	D	regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU	1956389..1957090	Shewanella loihica PV-4	4920836
YP_001093828.1	CDS	Shew_1702	NC_009092.1	1957602	1957907	D	PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein	1957602..1957907	Shewanella loihica PV-4	4920837
YP_001093829.1	CDS	Shew_1703	NC_009092.1	1957950	1958477	D	hypothetical protein	1957950..1958477	Shewanella loihica PV-4	4920860
YP_001093830.1	CDS	Shew_1704	NC_009092.1	1958821	1959285	D	hypothetical protein	1958821..1959285	Shewanella loihica PV-4	4920876
YP_001093831.1	CDS	Shew_1705	NC_009092.1	1959298	1959663	D	KEGG: hch:HCH_03896 hypothetical protein; hypothetical protein	1959298..1959663	Shewanella loihica PV-4	4921390
YP_001093832.1	CDS	Shew_1706	NC_009092.1	1959756	1960148	D	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vvu:VV21212 hypothetical protein; glutathione-dependent formaldehyde-activating protein	1959756..1960148	Shewanella loihica PV-4	4921391
YP_001093833.1	CDS	Shew_1707	NC_009092.1	1960484	1961410	D	hypothetical protein	1960484..1961410	Shewanella loihica PV-4	4921484
YP_001093834.1	CDS	Shew_1708	NC_009092.1	1961524	1962102	D	PFAM: protein of unknown function UPF0157; KEGG: cps:CPS_2738 hypothetical protein; hypothetical protein	1961524..1962102	Shewanella loihica PV-4	4921699
YP_001093835.1	CDS	Shew_1709	NC_009092.1	1962233	1962598	D	SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein	1962233..1962598	Shewanella loihica PV-4	4921932
YP_001093836.1	CDS	Shew_1710	NC_009092.1	1962609	1962854	R	PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein; hypothetical protein	complement(1962609..1962854)	Shewanella loihica PV-4	4921951
YP_001093837.1	CDS	Shew_1711	NC_009092.1	1963016	1964173	D	KEGG: ppr:PBPRB1467 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein	1963016..1964173	Shewanella loihica PV-4	4921952
YP_001093838.1	CDS	Shew_1712	NC_009092.1	1964325	1965611	D	KEGG: she:Shewmr4_2549 hypothetical protein; hypothetical protein	1964325..1965611	Shewanella loihica PV-4	4921973
YP_001093839.1	CDS	Shew_1713	NC_009092.1	1965922	1966971	D	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase	1965922..1966971	Shewanella loihica PV-4	4921923
YP_001093840.1	CDS	Shew_1714	NC_009092.1	1967062	1967934	D	PFAM: alpha/beta hydrolase fold; KEGG: ppr:PBPRA1463 putative haloalkane dehalogenase; alpha/beta hydrolase	1967062..1967934	Shewanella loihica PV-4	4922223
YP_001093841.1	CDS	Shew_1715	NC_009092.1	1967988	1969679	D	Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase	1967988..1969679	Shewanella loihica PV-4	4922224
YP_001093842.1	CDS	Shew_1716	NC_009092.1	1969686	1970807	D	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ppr:PBPRA1465 steroid dehydrogenase; 3-beta hydroxysteroid dehydrogenase/isomerase	1969686..1970807	Shewanella loihica PV-4	4922364
YP_001093843.1	CDS	Shew_1717	NC_009092.1	1970838	1971260	R	PFAM: globin; KEGG: cvi:CV2936 probable bacterial hemoglobin; globin	complement(1970838..1971260)	Shewanella loihica PV-4	4922455
YP_001093844.1	CDS	Shew_1718	NC_009092.1	1971424	1972764	R	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: shm:Shewmr7_2432 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase	complement(1971424..1972764)	Shewanella loihica PV-4	4922564
YP_001093845.1	CDS	Shew_1719	NC_009092.1	1972914	1973966	D	KEGG: shm:Shewmr7_2431 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase	1972914..1973966	Shewanella loihica PV-4	4922889
YP_001093846.1	CDS	Shew_1720	NC_009092.1	1973989	1975137	D	PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase	1973989..1975137	Shewanella loihica PV-4	4922890
YP_001093847.1	CDS	Shew_1721	NC_009092.1	1975224	1976153	D	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; type 11 methyltransferase	1975224..1976153	Shewanella loihica PV-4	4922998
YP_001093848.1	CDS	Shew_1722	NC_009092.1	1976169	1976882	D	TIGRFAM: dethiobiotin synthase; KEGG: she:Shewmr4_2356 dethiobiotin synthase; dethiobiotin synthase	1976169..1976882	Shewanella loihica PV-4	4923084
YP_001093849.1	CDS	Shew_1723	NC_009092.1	1977199	1978062	D	putative metalloprotease; heat shock protein HtpX	1977199..1978062	Shewanella loihica PV-4	4922838
YP_001093850.1	CDS	Shew_1724	NC_009092.1	1978401	1978751	D	KEGG: shm:Shewmr7_2388 cytochrome c3; cytochrome c3	1978401..1978751	Shewanella loihica PV-4	4922839
YP_001093851.1	CDS	Shew_1725	NC_009092.1	1979156	1979707	D	PFAM: Curlin associated repeat protein; KEGG: sfr:Sfri_1515 curlin associated repeat protein; curlin-associated protein	1979156..1979707	Shewanella loihica PV-4	4923234
YP_001093852.1	CDS	Shew_1726	NC_009092.1	1979869	1980495	D	PFAM: regulatory protein, LuxR; KEGG: sfr:Sfri_1517 transcriptional regulator, LuxR family protein; LuxR family transcriptional regulator	1979869..1980495	Shewanella loihica PV-4	4923262
YP_001093853.1	CDS	Shew_1727	NC_009092.1	1980492	1980959	D	KEGG: sfr:Sfri_1518 hypothetical protein; hypothetical protein	1980492..1980959	Shewanella loihica PV-4	4923370
YP_001093854.1	CDS	Shew_1728	NC_009092.1	1980974	1981393	D	KEGG: sfr:Sfri_1519 curli production assembly/transport component CsgF precursor; curli production assembly/transport component CsgF	1980974..1981393	Shewanella loihica PV-4	4923468
YP_001093855.1	CDS	Shew_1729	NC_009092.1	1981396	1982244	D	PFAM: Curli production assembly/transport component CsgG; KEGG: sfr:Sfri_1520 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG	1981396..1982244	Shewanella loihica PV-4	4923469
YP_001093856.1	CDS	Shew_1730	NC_009092.1	1982460	1983026	D	hypothetical protein	1982460..1983026	Shewanella loihica PV-4	4923518
YP_001093857.1	CDS	Shew_1731	NC_009092.1	1983289	1983639	D	PFAM: histidine triad (HIT) protein; KEGG: sfr:Sfri_1522 histidine triad (HIT) protein; histidine triad (HIT) protein	1983289..1983639	Shewanella loihica PV-4	4923539
YP_001093858.1	CDS	Shew_1732	NC_009092.1	1983670	1984167	D	TIGRFAM: uncharacterized domain 1 protein; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein; hypothetical protein	1983670..1984167	Shewanella loihica PV-4	4923676
YP_001093859.1	CDS	Shew_1733	NC_009092.1	1984164	1984628	D	PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2382 thioesterase superfamily protein; thioesterase superfamily protein	1984164..1984628	Shewanella loihica PV-4	4923677
YP_001093860.1	CDS	Shew_1734	NC_009092.1	1984659	1985048	D	PFAM: protein of unknown function DUF1425; KEGG: sfr:Sfri_1525 protein of unknown function DUF1425; hypothetical protein	1984659..1985048	Shewanella loihica PV-4	4923715
YP_001093861.1	CDS	Shew_1735	NC_009092.1	1985370	1987511	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2310 TonB-dependent receptor; TonB-dependent receptor	1985370..1987511	Shewanella loihica PV-4	4923745
YP_001093862.1	CDS	Shew_1736	NC_009092.1	1987576	1987836	D	KEGG: son:SO2714 hypothetical protein; hypothetical protein	1987576..1987836	Shewanella loihica PV-4	4923805
YP_001093863.1	CDS	Shew_1737	NC_009092.1	1987880	1988527	D	TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative; nicotinamide mononucleotide transporter PnuC	1987880..1988527	Shewanella loihica PV-4	4923836
YP_001093864.1	CDS	Shew_1738	NC_009092.1	1988567	1989706	D	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: sdn:Sden_2318 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase	1988567..1989706	Shewanella loihica PV-4	4923837
YP_001093865.1	CDS	Shew_1739	NC_009092.1	1989977	1990567	D	PFAM: DoxX family protein; KEGG: sfr:Sfri_1531 DoxX family protein; DoxX family protein	1989977..1990567	Shewanella loihica PV-4	4923903
YP_001093866.1	CDS	Shew_1740	NC_009092.1	1990663	1991211	D	PFAM: nitroreductase; KEGG: sfr:Sfri_1532 nitroreductase; nitroreductase	1990663..1991211	Shewanella loihica PV-4	4923933
YP_001093867.1	CDS	Shew_1741	NC_009092.1	1991469	1992200	R	PFAM: beta-lactamase domain protein; KEGG: vvy:VV2889 uncharacterized flavoprotein; beta-lactamase domain-containing protein	complement(1991469..1992200)	Shewanella loihica PV-4	4923968
YP_001093868.1	CDS	Shew_1742	NC_009092.1	1992241	1992858	R	KEGG: vvy:VV2888 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein	complement(1992241..1992858)	Shewanella loihica PV-4	4923969
YP_001093869.1	CDS	Shew_1743	NC_009092.1	1992935	1993438	D	PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2707 acetyltransferase, GNAT family; N-acetyltransferase GCN5	1992935..1993438	Shewanella loihica PV-4	4923974
YP_001093870.1	CDS	Shew_1744	NC_009092.1	1993686	1994291	D	PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1594 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	1993686..1994291	Shewanella loihica PV-4	4924003
YP_001093871.1	CDS	Shew_1745	NC_009092.1	1994318	1994770	D	PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1595 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	1994318..1994770	Shewanella loihica PV-4	4924044
YP_001093872.1	CDS	Shew_1746	NC_009092.1	1994818	1995216	D	KEGG: shm:Shewmr7_1596 hypothetical protein; hypothetical protein	1994818..1995216	Shewanella loihica PV-4	4924099
YP_001093873.1	CDS	Shew_1747	NC_009092.1	1995352	1995741	D	KEGG: she:Shewmr4_1530 hypothetical protein; hypothetical protein	1995352..1995741	Shewanella loihica PV-4	4924100
YP_001093874.1	CDS	Shew_1748	NC_009092.1	1996065	1996301	R	hypothetical protein	complement(1996065..1996301)	Shewanella loihica PV-4	4924109
YP_001093875.1	CDS	Shew_1749	NC_009092.1	1997076	1998575	D	KEGG: vpa:VPA1301 hypothetical protein; hypothetical protein	1997076..1998575	Shewanella loihica PV-4	4924274
YP_001093876.1	CDS	Shew_1751	NC_009092.1	1999736	2001265	D	KEGG: she:Shewmr4_2329 hypothetical protein; hypothetical protein	1999736..2001265	Shewanella loihica PV-4	4921919
YP_001093877.1	CDS	Shew_1752	NC_009092.1	2001262	2005365	D	PFAM: Proprotein convertase, P; KEGG: she:Shewmr4_2330 hypothetical protein; proprotein convertase, P	2001262..2005365	Shewanella loihica PV-4	4921866
YP_001093878.1	CDS	Shew_1753	NC_009092.1	2005358	2005882	D	hypothetical protein	2005358..2005882	Shewanella loihica PV-4	4923080
YP_001093879.1	CDS	Shew_1754	NC_009092.1	2006401	2006565	R	KEGG: sfr:Sfri_2114 hypothetical protein; hypothetical protein	complement(2006401..2006565)	Shewanella loihica PV-4	4923140
YP_001093880.1	CDS	Shew_1755	NC_009092.1	2006591	2006941	R	PFAM: hydrogenase expression/synthesis, HypA; KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA; hydrogenase expression/synthesis, HypA	complement(2006591..2006941)	Shewanella loihica PV-4	4924070
YP_001093881.1	CDS	Shew_1756	NC_009092.1	2006941	2007951	R	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sfr:Sfri_2112 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE	complement(2006941..2007951)	Shewanella loihica PV-4	4920950
YP_001093882.1	CDS	Shew_1757	NC_009092.1	2007954	2009069	R	TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: shm:Shewmr7_2163 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD	complement(2007954..2009069)	Shewanella loihica PV-4	4920951
YP_001093883.1	CDS	Shew_1758	NC_009092.1	2009066	2009314	R	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF	complement(2009066..2009314)	Shewanella loihica PV-4	4923187
YP_001093884.1	CDS	Shew_1759	NC_009092.1	2009317	2010150	R	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: she:Shewmr4_1816 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB	complement(2009317..2010150)	Shewanella loihica PV-4	4921858
YP_001093885.1	CDS	Shew_1760	NC_009092.1	2010302	2012647	R	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF	complement(2010302..2012647)	Shewanella loihica PV-4	4923210
YP_001093886.1	CDS	Shew_1761	NC_009092.1	2012673	2014460	R	KEGG: she:Shewmr4_1818 hypothetical protein; hypothetical protein	complement(2012673..2014460)	Shewanella loihica PV-4	4923211
YP_001093887.1	CDS	Shew_1762	NC_009092.1	2014441	2015004	R	TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: shm:Shewmr7_2158 hydrogenase expression/formation protein; hydrogenase expression/formation protein	complement(2014441..2015004)	Shewanella loihica PV-4	4920456
YP_001093888.1	CDS	Shew_1763	NC_009092.1	2015016	2015687	R	TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: she:Shewmr4_1820 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit	complement(2015016..2015687)	Shewanella loihica PV-4	4920938
YP_001093889.1	CDS	Shew_1764	NC_009092.1	2015698	2017404	R	PFAM: nickel-dependent hydrogenase, large subunit; KEGG: she:Shewmr4_1821 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit	complement(2015698..2017404)	Shewanella loihica PV-4	4923524
YP_001093890.1	CDS	Shew_1765	NC_009092.1	2017409	2018545	R	KEGG: shm:Shewmr7_2155 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA	complement(2017409..2018545)	Shewanella loihica PV-4	4921459
YP_001093891.1	CDS	Shew_1766	NC_009092.1	2018888	2019304	D	PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein	2018888..2019304	Shewanella loihica PV-4	4921460
YP_001093892.1	CDS	Shew_1767	NC_009092.1	2019461	2023348	D	KEGG: shm:Shewmr7_2138 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA	2019461..2023348	Shewanella loihica PV-4	4922036
YP_001093893.1	CDS	Shew_1768	NC_009092.1	2023767	2023925	D	PFAM: periplasmic nitrate reductase NapE; KEGG: shm:Shewmr7_2137 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE	2023767..2023925	Shewanella loihica PV-4	4922675
YP_001093894.1	CDS	Shew_1769	NC_009092.1	2023959	2024222	D	PFAM: NapD family protein; KEGG: sdn:Sden_1496 NapD; NapD family protein	2023959..2024222	Shewanella loihica PV-4	4923746
YP_001093895.1	CDS	Shew_1770	NC_009092.1	2024219	2026714	D	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit	2024219..2026714	Shewanella loihica PV-4	4923747
YP_001093896.1	CDS	Shew_1771	NC_009092.1	2026726	2027205	D	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_2134 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit	2026726..2027205	Shewanella loihica PV-4	4921535
YP_001093897.1	CDS	Shew_1772	NC_009092.1	2027216	2027803	D	TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shm:Shewmr7_2133 periplasmic nitrate (or nitrite) reductase C-type cytochrome, NapC/NirT family; NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome	2027216..2027803	Shewanella loihica PV-4	4922248
YP_001093898.1	CDS	Shew_1773	NC_009092.1	2027904	2028824	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vfi:VFA0105 transcriptional regulator; LysR family transcriptional regulator	complement(2027904..2028824)	Shewanella loihica PV-4	4922442
YP_001093899.1	CDS	Shew_1774	NC_009092.1	2029126	2029623	D	KEGG: sfr:Sfri_2545 excinuclease ATPase subunit; excinuclease ATPase subunit	2029126..2029623	Shewanella loihica PV-4	4923042
YP_001093900.1	CDS	ilvH	NC_009092.1	2029797	2030291	R	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit	complement(2029797..2030291)	Shewanella loihica PV-4	4923043
YP_001093901.1	CDS	Shew_1776	NC_009092.1	2030291	2032012	R	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit	complement(2030291..2032012)	Shewanella loihica PV-4	4922702
YP_001093902.1	CDS	Shew_1777	NC_009092.1	2032466	2033689	R	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1831 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter	complement(2032466..2033689)	Shewanella loihica PV-4	4921442
YP_001093903.1	CDS	Shew_1778	NC_009092.1	2033905	2034792	R	KEGG: lpn:lpg2606 glutamine amidotransferase; glutamine amidotransferase	complement(2033905..2034792)	Shewanella loihica PV-4	4923480
YP_001093904.1	CDS	Shew_1779	NC_009092.1	2035024	2036907	D	KEGG: she:Shewmr4_1752 alkaline phosphatase; alkaline phosphatase	2035024..2036907	Shewanella loihica PV-4	4923481
YP_001093905.1	CDS	Shew_1780	NC_009092.1	2036973	2037656	R	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: ppr:PBPRB1270 hypothetical protein; glutathione S-transferase domain-containing protein	complement(2036973..2037656)	Shewanella loihica PV-4	4923479
YP_001093906.1	CDS	Shew_1781	NC_009092.1	2037965	2038945	D	PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_1760 rhodanese domain protein; hypothetical protein	2037965..2038945	Shewanella loihica PV-4	4921110
YP_001093907.1	CDS	Shew_1782	NC_009092.1	2039709	2040188	D	PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_3435 transcriptional regulator, MarR family; MarR family transcriptional regulator	2039709..2040188	Shewanella loihica PV-4	4921424
YP_001093908.1	CDS	Shew_1783	NC_009092.1	2040194	2041252	D	PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0517 secretion protein HlyD family protein; secretion protein HlyD family protein	2040194..2041252	Shewanella loihica PV-4	4922673
YP_001093909.1	CDS	Shew_1784	NC_009092.1	2041262	2042290	D	KEGG: son:SO4050 hypothetical protein; hypothetical protein	2041262..2042290	Shewanella loihica PV-4	4922674
YP_001093910.1	CDS	Shew_1785	NC_009092.1	2042287	2043090	R	PFAM: band 7 protein; KEGG: sdn:Sden_2191 band 7 protein; hypothetical protein	complement(2042287..2043090)	Shewanella loihica PV-4	4924349
YP_001093911.1	CDS	Shew_1786	NC_009092.1	2043100	2044602	R	PFAM: protein of unknown function DUF107; KEGG: sdn:Sden_2190 protein of unknown function DUF107; hypothetical protein	complement(2043100..2044602)	Shewanella loihica PV-4	4921374
YP_001093912.1	CDS	Shew_1787	NC_009092.1	2044776	2046161	D	KEGG: son:SO2189 conserved hypothetical protein; putative chaperone	2044776..2046161	Shewanella loihica PV-4	4921262
YP_001093913.1	CDS	Shew_1788	NC_009092.1	2046229	2046726	D	PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein	2046229..2046726	Shewanella loihica PV-4	4921263
YP_001093914.1	CDS	Shew_1789	NC_009092.1	2046906	2048093	R	catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase	complement(2046906..2048093)	Shewanella loihica PV-4	4924407
YP_001093915.1	CDS	Shew_1790	NC_009092.1	2048197	2050368	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_2203 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(2048197..2050368)	Shewanella loihica PV-4	4924402
YP_001093916.1	CDS	Shew_1791	NC_009092.1	2050371	2051063	R	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_1623 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator	complement(2050371..2051063)	Shewanella loihica PV-4	4924302
YP_001093917.1	CDS	Shew_1792	NC_009092.1	2051283	2052038	D	PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_1624 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	2051283..2052038	Shewanella loihica PV-4	4924304
YP_001093918.1	CDS	Shew_1793	NC_009092.1	2052078	2054408	D	PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: shm:Shewmr7_2277 vault protein inter-alpha-trypsin domain protein; vault protein inter-alpha-trypsin subunit	2052078..2054408	Shewanella loihica PV-4	4924305
YP_001093919.1	CDS	Shew_1794	NC_009092.1	2054408	2055208	D	TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein	2054408..2055208	Shewanella loihica PV-4	4924312
YP_001093920.1	CDS	Shew_1795	NC_009092.1	2055296	2056315	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_2198 diguanylate cyclase; diguanylate cyclase	complement(2055296..2056315)	Shewanella loihica PV-4	4924319
YP_001093921.1	CDS	Shew_1796	NC_009092.1	2056472	2059096	R	PFAM: Mammalian cell entry related domain protein; KEGG: she:Shewmr4_1667 mammalian cell entry related domain protein; hypothetical protein	complement(2056472..2059096)	Shewanella loihica PV-4	4924390
YP_001093922.1	CDS	Shew_1797	NC_009092.1	2059083	2059715	R	PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1743 paraquat-inducible protein A; paraquat-inducible protein A	complement(2059083..2059715)	Shewanella loihica PV-4	4924391
YP_001093923.1	CDS	Shew_1798	NC_009092.1	2059708	2060370	R	PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1744 paraquat-inducible protein A; paraquat-inducible protein A	complement(2059708..2060370)	Shewanella loihica PV-4	4924324
YP_001093924.1	CDS	Shew_1799	NC_009092.1	2060579	2060875	D	PFAM: YebG family protein; KEGG: sdn:Sden_1719 YebG; hypothetical protein	2060579..2060875	Shewanella loihica PV-4	4924336
YP_001093925.1	CDS	Shew_1800	NC_009092.1	2060893	2061351	D	PFAM: GAF domain protein; KEGG: son:SO2603 GAF domain-containing protein; putative GAF sensor protein	2060893..2061351	Shewanella loihica PV-4	4924297
YP_001093926.1	CDS	Shew_1801	NC_009092.1	2061621	2062268	D	affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector	2061621..2062268	Shewanella loihica PV-4	4924294
YP_001093927.1	CDS	Shew_1802	NC_009092.1	2062300	2064345	D	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease	2062300..2064345	Shewanella loihica PV-4	4924295
YP_001093928.1	CDS	pepN	NC_009092.1	2064418	2066979	D	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_1749 aminopeptidase N; aminopeptidase N	2064418..2066979	Shewanella loihica PV-4	4921804
YP_001093929.1	CDS	Shew_1804	NC_009092.1	2067124	2067378	D	KEGG: son:SO2598 hypothetical protein; hypothetical protein	2067124..2067378	Shewanella loihica PV-4	4920438
YP_001093930.1	CDS	Shew_1805	NC_009092.1	2067704	2069752	D	PFAM: protein of unknown function DUF1302; KEGG: shm:Shewmr7_1751 protein of unknown function DUF1302; hypothetical protein	2067704..2069752	Shewanella loihica PV-4	4924396
YP_001093931.1	CDS	Shew_1806	NC_009092.1	2069771	2071135	D	PFAM: protein of unknown function DUF1329; KEGG: shm:Shewmr7_1752 protein of unknown function DUF1329; hypothetical protein	2069771..2071135	Shewanella loihica PV-4	4924397
YP_001093932.1	CDS	Shew_1807	NC_009092.1	2071283	2072296	D	KEGG: shm:Shewmr7_1753 BNR repeat protein; BNR repeat-containing protein	2071283..2072296	Shewanella loihica PV-4	4924401
YP_001093933.1	CDS	Shew_1808	NC_009092.1	2072309	2074612	D	KEGG: shm:Shewmr7_1754 hypothetical protein; hypothetical protein	2072309..2074612	Shewanella loihica PV-4	4924388
YP_001093934.1	CDS	Shew_1809	NC_009092.1	2074877	2079721	D	PFAM: NAD-glutamate dehydrogenase; KEGG: shm:Shewmr7_1755 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase	2074877..2079721	Shewanella loihica PV-4	4924387
YP_001093935.1	CDS	Shew_1810	NC_009092.1	2079784	2080809	D	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2	2079784..2080809	Shewanella loihica PV-4	4924383
YP_001093936.1	CDS	Shew_1811	NC_009092.1	2080969	2081502	D	PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein; hypothetical protein	2080969..2081502	Shewanella loihica PV-4	4924384
YP_001093937.1	CDS	rlmL	NC_009092.1	2083035	2085170	D	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase	2083035..2085170	Shewanella loihica PV-4	4921704
YP_001093938.1	CDS	Shew_1813	NC_009092.1	2085163	2085399	D	PFAM: glutaredoxin 2; KEGG: shm:Shewmr7_1608 glutaredoxin 2; glutaredoxin	2085163..2085399	Shewanella loihica PV-4	4924380
YP_001093939.1	CDS	Shew_1814	NC_009092.1	2085401	2087320	D	Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase	2085401..2087320	Shewanella loihica PV-4	4924377
YP_001093940.1	CDS	Shew_1815	NC_009092.1	2087345	2089198	D	KEGG: shm:Shewmr7_1610 hypothetical protein; hypothetical protein	2087345..2089198	Shewanella loihica PV-4	4924378
YP_001093941.1	CDS	Shew_1816	NC_009092.1	2089384	2089560	D	PFAM: ribosome modulation factor; KEGG: shm:Shewmr7_1611 ribosome modulation factor; ribosome modulation factor	2089384..2089560	Shewanella loihica PV-4	4924375
YP_001093942.1	CDS	Shew_1817	NC_009092.1	2089619	2090134	R	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase	complement(2089619..2090134)	Shewanella loihica PV-4	4924374
YP_001093943.1	CDS	Shew_1818	NC_009092.1	2090202	2091911	R	KEGG: she:Shewmr4_1546 conserved hypothetical ATP-dependent protease; ATP-dependent protease	complement(2090202..2091911)	Shewanella loihica PV-4	4924373
YP_001093944.1	CDS	Shew_1819	NC_009092.1	2092309	2092977	D	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sdn:Sden_1663 GntR-like protein; GntR family transcriptional regulator	2092309..2092977	Shewanella loihica PV-4	4924371
YP_001093945.1	CDS	prpB	NC_009092.1	2092990	2093868	D	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase	2092990..2093868	Shewanella loihica PV-4	4924372
YP_001093946.1	CDS	Shew_1821	NC_009092.1	2093970	2095094	D	KEGG: pat:Patl_1420 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II	2093970..2095094	Shewanella loihica PV-4	4924370
YP_001093947.2	CDS	Shew_1822	NC_009092.1	2095181	2097769	D	Catalyzes the conversion of citrate to isocitrate; aconitate hydratase	2095181..2097769	Shewanella loihica PV-4	4924367
YP_001093948.1	CDS	Shew_1823	NC_009092.1	2097828	2098997	D	TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; putative AcnD-accessory protein PrpF	2097828..2098997	Shewanella loihica PV-4	4922602
YP_001093949.1	CDS	Shew_1824	NC_009092.1	2099222	2099911	D	in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator	2099222..2099911	Shewanella loihica PV-4	4922603
YP_001093950.1	CDS	uvrC	NC_009092.1	2099943	2101772	D	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C	2099943..2101772	Shewanella loihica PV-4	4924363
YP_001093951.1	CDS	Shew_1826	NC_009092.1	2101820	2102377	D	KEGG: shm:Shewmr7_1616 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2101820..2102377	Shewanella loihica PV-4	4924362
YP_001093952.1	CDS	Shew_1827	NC_009092.1	2103011	2103577	D	KEGG: she:Shewmr4_3520 methylation site containing protein; methylation site containing protein	2103011..2103577	Shewanella loihica PV-4	4921707
YP_001093953.1	CDS	Shew_1828	NC_009092.1	2103707	2105083	D	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sfr:Sfri_1440 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein	2103707..2105083	Shewanella loihica PV-4	4924346
YP_001093954.1	CDS	Shew_1829	NC_009092.1	2105252	2105743	D	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: shm:Shewmr7_2145 protein of unknown function DUF882; hypothetical protein	2105252..2105743	Shewanella loihica PV-4	4924347
YP_001093955.1	CDS	Shew_1830	NC_009092.1	2105880	2106167	D	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25	2105880..2106167	Shewanella loihica PV-4	4924344
YP_001093956.1	CDS	Shew_1831	NC_009092.1	2106265	2107797	R	PFAM: SpoVR family protein; KEGG: sdn:Sden_1636 SpoVR; SpoVR family protein	complement(2106265..2107797)	Shewanella loihica PV-4	4922093
YP_001093957.1	CDS	Shew_1832	NC_009092.1	2107806	2109074	R	PFAM: protein of unknown function DUF444; KEGG: shm:Shewmr7_1645 protein of unknown function DUF444; hypothetical protein	complement(2107806..2109074)	Shewanella loihica PV-4	4921968
YP_001093958.1	CDS	Shew_1833	NC_009092.1	2109122	2111056	R	PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA	complement(2109122..2111056)	Shewanella loihica PV-4	4921969
YP_001093959.1	CDS	Shew_1834	NC_009092.1	2111512	2112096	R	PFAM: manganese and iron superoxide dismutase; KEGG: sfr:Sfri_1747 superoxide dismutase; superoxide dismutase	complement(2111512..2112096)	Shewanella loihica PV-4	4924333
YP_001093960.1	CDS	Shew_1835	NC_009092.1	2112328	2112678	D	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: shm:Shewmr7_1648 glutaredoxin-like protein; glutaredoxin-like protein	2112328..2112678	Shewanella loihica PV-4	4924335
YP_001093961.1	CDS	Shew_1836	NC_009092.1	2112798	2114033	R	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_1649 uracil-xanthine permease; uracil-xanthine permease	complement(2112798..2114033)	Shewanella loihica PV-4	4924330
YP_001093962.1	CDS	Shew_1837	NC_009092.1	2114231	2115361	D	KEGG: son:SO2878 hypothetical protein; hypothetical protein	2114231..2115361	Shewanella loihica PV-4	4924325
YP_001093963.1	CDS	Shew_1838	NC_009092.1	2115452	2116162	D	controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor	2115452..2116162	Shewanella loihica PV-4	4924326
YP_001093964.1	CDS	Shew_1839	NC_009092.1	2116293	2116664	R	KEGG: sfr:Sfri_1753 hypothetical protein; hypothetical protein	complement(2116293..2116664)	Shewanella loihica PV-4	4924321
YP_001093965.1	CDS	Shew_1840	NC_009092.1	2116679	2117041	R	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sfr:Sfri_1754 arsenate reductase; arsenate reductase	complement(2116679..2117041)	Shewanella loihica PV-4	4924318
YP_001093966.1	CDS	Shew_1841	NC_009092.1	2117114	2118571	R	PFAM: peptidase M48, Ste24p; KEGG: she:Shewmr4_2347 peptidase M48, Ste24p; peptidase M48, Ste24p	complement(2117114..2118571)	Shewanella loihica PV-4	4924314
YP_001093967.1	CDS	Shew_1842	NC_009092.1	2118741	2118962	D	PFAM: SirA family protein; KEGG: she:Shewmr4_2346 SirA family protein; SirA family protein	2118741..2118962	Shewanella loihica PV-4	4924315
YP_001093968.1	CDS	Shew_1843	NC_009092.1	2119132	2120232	D	PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_2417 protein of unknown function UPF0118; hypothetical protein	2119132..2120232	Shewanella loihica PV-4	4921423
YP_001093969.1	CDS	Shew_1844	NC_009092.1	2120304	2121191	R	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein	complement(2120304..2121191)	Shewanella loihica PV-4	4924313
YP_001093970.1	CDS	Shew_1845	NC_009092.1	2121305	2121949	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2415 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	2121305..2121949	Shewanella loihica PV-4	4924311
YP_001093971.1	CDS	Shew_1846	NC_009092.1	2122051	2122521	R	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pat:Patl_2480 redoxin; redoxin domain-containing protein	complement(2122051..2122521)	Shewanella loihica PV-4	4924309
YP_001093972.1	CDS	Shew_1847	NC_009092.1	2122518	2123072	R	PFAM: amino acid-binding ACT domain protein; KEGG: shm:Shewmr7_2413 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein	complement(2122518..2123072)	Shewanella loihica PV-4	4924310
YP_001093973.1	CDS	Shew_1848	NC_009092.1	2123316	2124200	D	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase	2123316..2124200	Shewanella loihica PV-4	4924303
YP_001093974.1	CDS	Shew_1849	NC_009092.1	2124205	2125326	D	PFAM: NlpBDapX family lipoprotein; KEGG: shm:Shewmr7_2411 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein	2124205..2125326	Shewanella loihica PV-4	4921046
YP_001093975.1	CDS	Shew_1850	NC_009092.1	2125619	2127991	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: pha:PSHAa1182 hypothetical protein ; GGDEF protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase	2125619..2127991	Shewanella loihica PV-4	4924298
YP_001093976.1	CDS	Shew_1851	NC_009092.1	2128155	2129240	D	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2410 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	2128155..2129240	Shewanella loihica PV-4	4924299
YP_001093977.1	CDS	Shew_1852	NC_009092.1	2129237	2132365	D	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2409 acriflavin resistance protein; acriflavin resistance protein	2129237..2132365	Shewanella loihica PV-4	4924296
YP_001093978.1	CDS	Shew_1853	NC_009092.1	2132614	2132931	D	KEGG: shm:Shewmr7_1688 hypothetical protein; hypothetical protein	2132614..2132931	Shewanella loihica PV-4	4924293
YP_001093979.1	CDS	Shew_1854	NC_009092.1	2133350	2134720	D	KEGG: sfr:Sfri_3720 hypothetical protein; hypothetical protein	2133350..2134720	Shewanella loihica PV-4	4924334
YP_001093980.1	CDS	Shew_1855	NC_009092.1	2134825	2135091	R	KEGG: sdn:Sden_2135 hypothetical protein; hypothetical protein	complement(2134825..2135091)	Shewanella loihica PV-4	4924358
YP_001093981.1	CDS	Shew_1856	NC_009092.1	2135122	2135859	R	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase	complement(2135122..2135859)	Shewanella loihica PV-4	4924359
YP_001093982.1	CDS	Shew_1857	NC_009092.1	2135944	2137014	R	PFAM: iron-containing alcohol dehydrogenase; KEGG: sdn:Sden_2133 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase	complement(2135944..2137014)	Shewanella loihica PV-4	4924369
YP_001093983.1	CDS	Shew_1858	NC_009092.1	2137104	2138291	R	PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: shm:Shewmr7_2125 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase	complement(2137104..2138291)	Shewanella loihica PV-4	4924385
YP_001093984.1	CDS	Shew_1859	NC_009092.1	2138546	2139157	R	PFAM: carbonic anhydrase; KEGG: shm:Shewmr7_2124 carbonate dehydratase; carbonate dehydratase	complement(2138546..2139157)	Shewanella loihica PV-4	4924398
YP_001093985.1	CDS	Shew_1860	NC_009092.1	2139297	2140130	R	PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_2123 alpha/beta hydrolase fold; alpha/beta hydrolase	complement(2139297..2140130)	Shewanella loihica PV-4	4924399
YP_001093986.1	CDS	Shew_1861	NC_009092.1	2140137	2140889	R	PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: sfr:Sfri_1764 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin	complement(2140137..2140889)	Shewanella loihica PV-4	4921291
YP_001093987.1	CDS	Shew_1862	NC_009092.1	2140883	2142013	R	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase	complement(2140883..2142013)	Shewanella loihica PV-4	4924306
YP_001093988.1	CDS	Shew_1863	NC_009092.1	2142010	2142354	R	PFAM: arsenate reductase and related; KEGG: she:Shewmr4_1858 hypothetical protein; arsenate reductase-like protein	complement(2142010..2142354)	Shewanella loihica PV-4	4924317
YP_001093989.1	CDS	Shew_1864	NC_009092.1	2142641	2143150	R	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter	complement(2142641..2143150)	Shewanella loihica PV-4	4924338
YP_001093990.1	CDS	Shew_1865	NC_009092.1	2143217	2144923	R	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: shm:Shewmr7_1842 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase	complement(2143217..2144923)	Shewanella loihica PV-4	4924339
YP_001093991.1	CDS	Shew_1866	NC_009092.1	2144935	2145192	R	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shm:Shewmr7_1843 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr	complement(2144935..2145192)	Shewanella loihica PV-4	4924289
YP_001093992.1	CDS	Shew_1867	NC_009092.1	2145224	2145616	R	KEGG: shm:Shewmr7_1844 hypothetical protein; hypothetical protein	complement(2145224..2145616)	Shewanella loihica PV-4	4924291
YP_001093993.1	CDS	Shew_1868	NC_009092.1	2145832	2147469	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_1845 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(2145832..2147469)	Shewanella loihica PV-4	4924327
YP_001093994.1	CDS	Shew_1869	NC_009092.1	2147862	2148554	D	KEGG: son:SO2241 hypothetical protein; hypothetical protein	2147862..2148554	Shewanella loihica PV-4	4924328
YP_001093995.1	CDS	Shew_1870	NC_009092.1	2148619	2149647	D	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1847 transcriptional regulator, LacI family; LacI family transcriptional regulator	2148619..2149647	Shewanella loihica PV-4	4924389
YP_001093996.1	CDS	Shew_1871	NC_009092.1	2149644	2150258	R	KEGG: vfi:VFA0016 DNA polymerase III epsilon subunit (3'-5' exonuclease); TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon	complement(2149644..2150258)	Shewanella loihica PV-4	4924353
YP_001093997.1	CDS	Shew_1872	NC_009092.1	2150354	2152438	R	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G	complement(2150354..2152438)	Shewanella loihica PV-4	4924292
YP_001093998.1	CDS	Shew_1873	NC_009092.1	2152982	2155483	R	KEGG: shm:Shewmr7_2109 glucan 1,4-alpha-glucosidase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; glucan 1,4-alpha-glucosidase	complement(2152982..2155483)	Shewanella loihica PV-4	4924094
YP_001093999.1	CDS	Shew_1874	NC_009092.1	2155574	2157148	R	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1870 major facilitator superfamily MFS_1; major facilitator superfamily transporter	complement(2155574..2157148)	Shewanella loihica PV-4	4924095
YP_001094000.1	CDS	Shew_1875	NC_009092.1	2157984	2159513	R	PFAM: peptidase M20; Fibronectin, type III domain protein; peptidase M28; KEGG: sfr:Sfri_3859 peptidase M28; peptidase M28	complement(2157984..2159513)	Shewanella loihica PV-4	4922127
YP_001094001.1	CDS	Shew_1876	NC_009092.1	2159901	2162024	R	KEGG: sfr:Sfri_1777 alpha-glucosidase; alpha-glucosidase	complement(2159901..2162024)	Shewanella loihica PV-4	4922128
YP_001094002.1	CDS	Shew_1877	NC_009092.1	2162552	2162956	D	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: hch:HCH_05473 hypothetical protein; glutathione-dependent formaldehyde-activating protein	2162552..2162956	Shewanella loihica PV-4	4922030
YP_001094003.1	CDS	Shew_1878	NC_009092.1	2163071	2164156	D	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: vpa:VPA0296 putative oxidoreductase protein; 2-nitropropane dioxygenase	2163071..2164156	Shewanella loihica PV-4	4922031
YP_001094004.1	CDS	Shew_1879	NC_009092.1	2164195	2164740	D	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1378 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	2164195..2164740	Shewanella loihica PV-4	4922032
YP_001094005.1	CDS	Shew_1880	NC_009092.1	2164791	2165231	D	KEGG: sfr:Sfri_1916 hypothetical protein; hypothetical protein	2164791..2165231	Shewanella loihica PV-4	4922033
YP_001094006.1	CDS	Shew_1881	NC_009092.1	2165424	2165825	D	KEGG: vch:VCA0414 hypothetical protein; hypothetical protein	2165424..2165825	Shewanella loihica PV-4	4921714
YP_001094007.1	CDS	Shew_1882	NC_009092.1	2165827	2167113	R	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sfr:Sfri_2300 metal dependent phosphohydrolase; metal dependent phosphohydrolase	complement(2165827..2167113)	Shewanella loihica PV-4	4921715
YP_001094008.1	CDS	Shew_1883	NC_009092.1	2167489	2167725	R	hypothetical protein	complement(2167489..2167725)	Shewanella loihica PV-4	4921716
YP_001094009.1	CDS	Shew_1884	NC_009092.1	2168190	2169656	D	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: vpa:VP0903 RhlE; DEAD/DEAH box helicase	2168190..2169656	Shewanella loihica PV-4	4921717
YP_001094010.1	CDS	Shew_1885	NC_009092.1	2170419	2171285	D	KEGG: hch:HCH_04427 hypothetical protein; hypothetical protein	2170419..2171285	Shewanella loihica PV-4	4921718
YP_001094011.1	CDS	Shew_1886	NC_009092.1	2171509	2173512	R	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sfr:Sfri_1784 alpha amylase, catalytic region; alpha amylase	complement(2171509..2173512)	Shewanella loihica PV-4	4921719
YP_001094012.1	CDS	Shew_1887	NC_009092.1	2173512	2175476	R	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region; alpha amylase	complement(2173512..2175476)	Shewanella loihica PV-4	4921720
YP_001094013.1	CDS	Shew_1888	NC_009092.1	2175650	2178478	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2134 TonB-dependent receptor; TonB-dependent receptor, plug	complement(2175650..2178478)	Shewanella loihica PV-4	4921768
YP_001094014.1	CDS	Shew_1889	NC_009092.1	2178964	2180589	D	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase; alpha amylase	2178964..2180589	Shewanella loihica PV-4	4921769
YP_001094015.1	CDS	Shew_1890	NC_009092.1	2180729	2181994	D	TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_1789 glucose/galactose transporter; glucose/galactose transporter	2180729..2181994	Shewanella loihica PV-4	4921770
YP_001094016.1	CDS	Shew_1891	NC_009092.1	2182111	2183367	D	PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative; Fmu (Sun) domain-containing protein	2182111..2183367	Shewanella loihica PV-4	4921771
YP_001094017.1	CDS	Shew_1892	NC_009092.1	2183542	2187027	D	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pae:PA0799 probable helicase; SNF2-related protein	2183542..2187027	Shewanella loihica PV-4	4921772
YP_001094018.1	CDS	Shew_1893	NC_009092.1	2187086	2187505	R	PFAM: protein of unknown function UPF0047; KEGG: sde:Sde_0527 alpha-1,6-glucosidases, pullulanase-type; hypothetical protein	complement(2187086..2187505)	Shewanella loihica PV-4	4921773
YP_001094019.1	CDS	Shew_1894	NC_009092.1	2187732	2189663	D	KEGG: vpa:VPA0700 hypothetical protein; hypothetical protein	2187732..2189663	Shewanella loihica PV-4	4921774
YP_001094020.1	CDS	Shew_1895	NC_009092.1	2189873	2190442	D	PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_2154 redoxin domain protein; redoxin domain-containing protein	2189873..2190442	Shewanella loihica PV-4	4921775
YP_001094021.1	CDS	Shew_1896	NC_009092.1	2190432	2190650	D	KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein	2190432..2190650	Shewanella loihica PV-4	4921776
YP_001094022.1	CDS	Shew_1897	NC_009092.1	2190811	2192133	D	KEGG: sfr:Sfri_1126 hypothetical protein; hypothetical protein	2190811..2192133	Shewanella loihica PV-4	4921777
YP_001094023.1	CDS	Shew_1898	NC_009092.1	2192157	2193149	D	PFAM: ApbE family lipoprotein; KEGG: shm:Shewmr7_2151 ApbE family lipoprotein; ApbE family lipoprotein	2192157..2193149	Shewanella loihica PV-4	4921778
YP_001094024.1	CDS	Shew_1899	NC_009092.1	2193844	2194353	D	KEGG: vpa:VP1792 hypothetical protein; hypothetical protein	2193844..2194353	Shewanella loihica PV-4	4921779
YP_001094025.1	CDS	asnC	NC_009092.1	2195005	2196405	R	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase	complement(2195005..2196405)	Shewanella loihica PV-4	4921780
YP_001094026.1	CDS	Shew_1901	NC_009092.1	2196652	2196987	D	KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein	2196652..2196987	Shewanella loihica PV-4	4921781
YP_001094027.1	CDS	Shew_1902	NC_009092.1	2197099	2197668	R	PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_2126 NUDIX hydrolase; NUDIX hydrolase	complement(2197099..2197668)	Shewanella loihica PV-4	4921782
YP_001094028.1	CDS	Shew_1903	NC_009092.1	2197686	2199119	R	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: shm:Shewmr7_2201 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I	complement(2197686..2199119)	Shewanella loihica PV-4	4921625
YP_001094029.1	CDS	Shew_1904	NC_009092.1	2199247	2200770	D	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: shm:Shewmr7_2200 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha	2199247..2200770	Shewanella loihica PV-4	4921626
YP_001094030.1	CDS	Shew_1905	NC_009092.1	2200934	2202991	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative; peptidase S9 prolyl oligopeptidase	2200934..2202991	Shewanella loihica PV-4	4921627
YP_001094031.1	CDS	Shew_1906	NC_009092.1	2203180	2203593	R	PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_4885 acetyltransferase, GNAT family; N-acetyltransferase GCN5	complement(2203180..2203593)	Shewanella loihica PV-4	4921628
YP_001094032.1	CDS	Shew_1907	NC_009092.1	2203874	2204302	D	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: tbd:Tbd_2410 hypothetical protein; glutathione-dependent formaldehyde-activating protein	2203874..2204302	Shewanella loihica PV-4	4921629
YP_001094033.1	CDS	Shew_1908	NC_009092.1	2204395	2205021	R	hypothetical protein	complement(2204395..2205021)	Shewanella loihica PV-4	4921630
YP_001094034.1	CDS	Shew_1909	NC_009092.1	2205526	2206188	R	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pat:Patl_3690 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase	complement(2205526..2206188)	Shewanella loihica PV-4	4921631
YP_001094035.1	CDS	Shew_1910	NC_009092.1	2206437	2209055	R	PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: she:Shewmr4_1683 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase	complement(2206437..2209055)	Shewanella loihica PV-4	4921632
YP_001094036.1	CDS	Shew_1911	NC_009092.1	2209370	2210011	D	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: shm:Shewmr7_1759 multiple antibiotic resistance (MarC)-related proteins; hypothetical protein	2209370..2210011	Shewanella loihica PV-4	4921633
YP_001094037.1	CDS	Shew_1912	NC_009092.1	2210118	2211443	R	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein	complement(2210118..2211443)	Shewanella loihica PV-4	4921634
YP_001094038.1	CDS	Shew_1913	NC_009092.1	2211472	2212059	R	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2484 hypothetical protein; hypothetical protein	complement(2211472..2212059)	Shewanella loihica PV-4	4921635
YP_001094039.1	CDS	Shew_1914	NC_009092.1	2212362	2213576	R	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT	complement(2212362..2213576)	Shewanella loihica PV-4	4921636
YP_001094040.1	CDS	Shew_1915	NC_009092.1	2213855	2214415	R	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P	complement(2213855..2214415)	Shewanella loihica PV-4	4921637
YP_001094041.1	CDS	Shew_1916	NC_009092.1	2214463	2215632	R	KEGG: sdn:Sden_1991 hypothetical protein; hypothetical protein	complement(2214463..2215632)	Shewanella loihica PV-4	4921638
YP_001094042.1	CDS	Shew_1917	NC_009092.1	2215844	2216371	R	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA	complement(2215844..2216371)	Shewanella loihica PV-4	4921245
YP_001094043.1	CDS	Shew_1918	NC_009092.1	2216422	2216694	R	PFAM: CopG domain protein DNA-binding domain protein; KEGG: sdn:Sden_1989 CopG-like DNA-binding; LexA regulated protein	complement(2216422..2216694)	Shewanella loihica PV-4	4921246
YP_001094044.1	CDS	Shew_1919	NC_009092.1	2216706	2216927	R	KEGG: shm:Shewmr7_1941 hypothetical protein; hypothetical protein	complement(2216706..2216927)	Shewanella loihica PV-4	4921247
YP_001094045.1	CDS	Shew_1920	NC_009092.1	2217009	2217776	R	PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase	complement(2217009..2217776)	Shewanella loihica PV-4	4921248
YP_001094046.1	CDS	Shew_1921	NC_009092.1	2218068	2218598	D	negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA	2218068..2218598	Shewanella loihica PV-4	4921249
YP_001094047.1	CDS	Shew_1922	NC_009092.1	2218643	2220322	D	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase	2218643..2220322	Shewanella loihica PV-4	4921250
YP_001094048.1	CDS	Shew_1923	NC_009092.1	2220481	2220960	R	KEGG: sdn:Sden_1784 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase	complement(2220481..2220960)	Shewanella loihica PV-4	4921251
YP_001094049.1	CDS	Shew_1924	NC_009092.1	2221280	2222347	D	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase	2221280..2222347	Shewanella loihica PV-4	4921252
YP_001094050.1	CDS	Shew_1925	NC_009092.1	2222531	2223709	D	PFAM: dehydrogenase, E1 component; KEGG: shm:Shewmr7_1947 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase	2222531..2223709	Shewanella loihica PV-4	4921253
YP_001094051.1	CDS	Shew_1926	NC_009092.1	2223713	2224690	D	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: shm:Shewmr7_1948 transketolase, central region; transketolase, central region	2223713..2224690	Shewanella loihica PV-4	4921254
YP_001094052.1	CDS	Shew_1927	NC_009092.1	2224702	2226264	D	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1949 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase	2224702..2226264	Shewanella loihica PV-4	4921255
YP_001094053.1	CDS	Shew_1928	NC_009092.1	2226384	2227451	D	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase	2226384..2227451	Shewanella loihica PV-4	4921256
YP_001094054.1	CDS	Shew_1929	NC_009092.1	2227766	2229754	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: shm:Shewmr7_1760 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	2227766..2229754	Shewanella loihica PV-4	4921257
YP_001094055.1	CDS	Shew_1930	NC_009092.1	2230307	2230504	D	PFAM: CopG domain protein DNA-binding domain protein; KEGG: sfr:Sfri_1091 hypothetical protein; CopG/DNA-binding domain-containing protein	2230307..2230504	Shewanella loihica PV-4	4921708
YP_001094056.1	CDS	Shew_1931	NC_009092.1	2230705	2231049	D	TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: sdn:Sden_1233 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA	2230705..2231049	Shewanella loihica PV-4	4921259
YP_001094057.1	CDS	cls	NC_009092.1	2231216	2232814	R	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase	complement(2231216..2232814)	Shewanella loihica PV-4	4921466
YP_001094058.1	CDS	Shew_1933	NC_009092.1	2232895	2233773	D	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ppr:PBPRA2923 hypothetical protein; endonuclease/exonuclease/phosphatase	2232895..2233773	Shewanella loihica PV-4	4921467
YP_001094059.1	CDS	Shew_1934	NC_009092.1	2233820	2234548	R	KEGG: dde:Dde_3063 hypothetical protein; hypothetical protein	complement(2233820..2234548)	Shewanella loihica PV-4	4921468
YP_001094060.1	CDS	Shew_1935	NC_009092.1	2235127	2236905	D	PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein	2235127..2236905	Shewanella loihica PV-4	4921469
YP_001094061.1	CDS	Shew_1936	NC_009092.1	2237070	2237750	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_2074 two component transcriptional regulator, winged helix family; two component transcriptional regulator	2237070..2237750	Shewanella loihica PV-4	4921470
YP_001094062.1	CDS	Shew_1937	NC_009092.1	2237876	2239003	D	PFAM: peptidase M14, carboxypeptidase A; KEGG: sfr:Sfri_2149 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A	2237876..2239003	Shewanella loihica PV-4	4921471
YP_001094063.1	CDS	Shew_1938	NC_009092.1	2239013	2239330	D	KEGG: son:SO2423 hypothetical protein; hypothetical protein	2239013..2239330	Shewanella loihica PV-4	4921472
YP_001094064.1	CDS	Shew_1939	NC_009092.1	2239327	2239608	D	PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein	2239327..2239608	Shewanella loihica PV-4	4921473
YP_001094065.1	CDS	ansA	NC_009092.1	2239668	2240681	R	converts asparagine to aspartate and ammonia; asparaginase	complement(2239668..2240681)	Shewanella loihica PV-4	4921474
YP_001094066.1	CDS	Shew_1941	NC_009092.1	2240803	2242644	R	TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type	complement(2240803..2242644)	Shewanella loihica PV-4	4921475
YP_001094067.1	CDS	Shew_1942	NC_009092.1	2242810	2244825	D	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2144 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase	2242810..2244825	Shewanella loihica PV-4	4921476
YP_001094068.1	CDS	Shew_1943	NC_009092.1	2244949	2245449	D	KEGG: hne:HNE_0837 YCII domain protein; hypothetical protein	2244949..2245449	Shewanella loihica PV-4	4921477
YP_001094069.1	CDS	Shew_1944	NC_009092.1	2245730	2246110	R	PFAM: ferredoxin; KEGG: sfr:Sfri_2135 ferredoxin; ferredoxin	complement(2245730..2246110)	Shewanella loihica PV-4	4921478
YP_001094070.1	CDS	nrdB	NC_009092.1	2246079	2247209	R	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta	complement(2246079..2247209)	Shewanella loihica PV-4	4921479
YP_001094071.1	CDS	Shew_1946	NC_009092.1	2247269	2249557	R	Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha	complement(2247269..2249557)	Shewanella loihica PV-4	4920979
YP_001094072.1	CDS	Shew_1947	NC_009092.1	2250038	2250757	R	KEGG: she:Shewmr4_1917 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase	complement(2250038..2250757)	Shewanella loihica PV-4	4920980
YP_001094073.1	CDS	Shew_1948	NC_009092.1	2250750	2251538	R	Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase	complement(2250750..2251538)	Shewanella loihica PV-4	4920981
YP_001094074.1	CDS	Shew_1949	NC_009092.1	2251792	2254431	D	TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: shm:Shewmr7_2059 DNA gyrase, A subunit; DNA gyrase subunit A	2251792..2254431	Shewanella loihica PV-4	4920982
YP_001094075.2	CDS	Shew_1950	NC_009092.1	2254562	2255656	D	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase	2254562..2255656	Shewanella loihica PV-4	4920983
YP_001094076.1	CDS	Shew_1951	NC_009092.1	2255769	2256959	R	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase	complement(2255769..2256959)	Shewanella loihica PV-4	4920984
YP_001094077.1	CDS	Shew_1952	NC_009092.1	2257349	2258629	D	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase	2257349..2258629	Shewanella loihica PV-4	4920985
YP_001094078.1	CDS	cmk	NC_009092.1	2258806	2259498	D	Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase	2258806..2259498	Shewanella loihica PV-4	4920986
YP_001094079.1	CDS	rpsA	NC_009092.1	2259598	2261265	D	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1	2259598..2261265	Shewanella loihica PV-4	4920987
YP_001094080.1	CDS	ihfB	NC_009092.1	2261338	2261625	D	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta	2261338..2261625	Shewanella loihica PV-4	4920988
YP_001094081.1	CDS	Shew_1956	NC_009092.1	2261736	2262065	D	PFAM: protein of unknown function DUF1049; KEGG: sfr:Sfri_2121 protein of unknown function DUF1049; hypothetical protein	2261736..2262065	Shewanella loihica PV-4	4920989
YP_001094082.1	CDS	Shew_1957	NC_009092.1	2262067	2263227	D	KEGG: son:SO2399 hypothetical protein; hypothetical protein	2262067..2263227	Shewanella loihica PV-4	4920990
YP_001094083.1	CDS	Shew_1958	NC_009092.1	2263263	2263958	D	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase	2263263..2263958	Shewanella loihica PV-4	4920991
YP_001094084.1	CDS	Shew_1959	NC_009092.1	2264022	2264837	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdn:Sden_1758 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase	2264022..2264837	Shewanella loihica PV-4	4920992
YP_001094085.1	CDS	Shew_1960	NC_009092.1	2264876	2265418	D	KEGG: son:SO2396 hypothetical protein; hypothetical protein	2264876..2265418	Shewanella loihica PV-4	4921392
YP_001094086.1	CDS	Shew_1961	NC_009092.1	2265581	2267332	D	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: she:Shewmr4_1931 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	2265581..2267332	Shewanella loihica PV-4	4921393
YP_001094087.1	CDS	Shew_1962	NC_009092.1	2267440	2269071	R	KEGG: son:SO2394 penicillin-binding protein 4; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	complement(2267440..2269071)	Shewanella loihica PV-4	4921394
YP_001094088.1	CDS	Shew_1963	NC_009092.1	2269106	2269282	R	KEGG: shm:Shewmr7_2043 hypothetical protein; hypothetical protein	complement(2269106..2269282)	Shewanella loihica PV-4	4921395
YP_001094089.1	CDS	Shew_1964	NC_009092.1	2269513	2269845	D	KEGG: son:SO2391 hypothetical protein; hypothetical protein	2269513..2269845	Shewanella loihica PV-4	4921396
YP_001094090.1	CDS	pssA	NC_009092.1	2269857	2271170	D	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase	2269857..2271170	Shewanella loihica PV-4	4921397
YP_001094091.1	CDS	Shew_1966	NC_009092.1	2271340	2272089	D	PFAM: DTW domain containing protein; KEGG: sdn:Sden_1780 hypothetical protein; DTW domain-containing protein	2271340..2272089	Shewanella loihica PV-4	4921398
YP_001094092.1	CDS	Shew_1967	NC_009092.1	2272733	2273950	R	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfr:Sfri_2093 amidohydrolase; amidohydrolase	complement(2272733..2273950)	Shewanella loihica PV-4	4921399
YP_001094093.1	CDS	Shew_1968	NC_009092.1	2274225	2275367	R	PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase; beta-lactamase	complement(2274225..2275367)	Shewanella loihica PV-4	4921400
YP_001094094.1	CDS	Shew_1969	NC_009092.1	2275612	2276211	R	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO1416 DNA-binding response regulator; two component LuxR family transcriptional regulator	complement(2275612..2276211)	Shewanella loihica PV-4	4921401
YP_001094095.1	CDS	Shew_1970	NC_009092.1	2276204	2277934	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO1417 sensor histidine kinase; histidine kinase	complement(2276204..2277934)	Shewanella loihica PV-4	4921402
YP_001094096.1	CDS	Shew_1971	NC_009092.1	2278482	2279660	R	PFAM: ApbE family lipoprotein; KEGG: son:SO1418 ApbE family protein; ApbE family lipoprotein	complement(2278482..2279660)	Shewanella loihica PV-4	4921403
YP_001094097.1	CDS	Shew_1972	NC_009092.1	2279858	2281207	D	PFAM: FMN-binding domain protein; KEGG: son:SO1419 hypothetical protein; FMN-binding domain-containing protein	2279858..2281207	Shewanella loihica PV-4	4921404
YP_001094098.1	CDS	Shew_1973	NC_009092.1	2281228	2282277	D	PFAM: porin, Gram-negative type; KEGG: son:SO1420 outer membrane porin, putative; porin	2281228..2282277	Shewanella loihica PV-4	4921405
YP_001094099.1	CDS	Shew_1974	NC_009092.1	2282437	2283003	D	KEGG: cps:CPS_0919 hypothetical protein; hypothetical protein	2282437..2283003	Shewanella loihica PV-4	4921406
YP_001094100.1	CDS	Shew_1975	NC_009092.1	2283239	2284159	D	catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase	2283239..2284159	Shewanella loihica PV-4	4921003
YP_001094101.1	CDS	Shew_1976	NC_009092.1	2284251	2286653	R	KEGG: ppr:PBPRB0364 putative ATP-dependent protease La-relatedprotein; putative ATP-dependent protease La-relatedprotein	complement(2284251..2286653)	Shewanella loihica PV-4	4921004
YP_001094102.1	CDS	Shew_1977	NC_009092.1	2286966	2287901	D	KEGG: cps:CPS_3923 sensory box/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase	2286966..2287901	Shewanella loihica PV-4	4921005
YP_001094103.1	CDS	Shew_1978	NC_009092.1	2288325	2289239	D	KEGG: vpa:VP1677 hypothetical protein; hypothetical protein	2288325..2289239	Shewanella loihica PV-4	4921006
YP_001094104.1	CDS	Shew_1979	NC_009092.1	2289313	2290248	D	KEGG: vpa:VP1678 putative dienelactone hydrolase and related enzymes; putative dienelactone hydrolase-related enzyme	2289313..2290248	Shewanella loihica PV-4	4921007
YP_001094105.1	CDS	Shew_1980	NC_009092.1	2290386	2291042	D	KEGG: vpa:VP1679 hypothetical protein; hypothetical protein	2290386..2291042	Shewanella loihica PV-4	4921008
YP_001094106.1	CDS	Shew_1981	NC_009092.1	2291029	2291928	D	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfl:PFL_2378 transcriptional regulator, AraC family; AraC family transcriptional regulator	2291029..2291928	Shewanella loihica PV-4	4921009
YP_001094107.1	CDS	Shew_1982	NC_009092.1	2293640	2294911	R	PFAM: phage integrase family protein; KEGG: shm:Shewmr7_1973 phage integrase family protein; phage integrase family protein	complement(2293640..2294911)	Shewanella loihica PV-4	4921010
YP_001094108.1	CDS	Shew_1983	NC_009092.1	2295234	2296805	D	PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_1971 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase	2295234..2296805	Shewanella loihica PV-4	4921011
YP_001094109.1	CDS	Shew_1984	NC_009092.1	2296998	2297495	R	KEGG: sfr:Sfri_2009 hypothetical protein; hypothetical protein	complement(2296998..2297495)	Shewanella loihica PV-4	4921012
YP_001094110.1	CDS	Shew_1985	NC_009092.1	2297760	2299187	D	CcoN; FixN; cbb3-type cytochrome c oxidase subunit I	2297760..2299187	Shewanella loihica PV-4	4921013
YP_001094111.1	CDS	Shew_1986	NC_009092.1	2299200	2299805	D	CcoO; FixO; cbb3-type cytochrome c oxidase subunit II	2299200..2299805	Shewanella loihica PV-4	4921014
YP_001094112.1	CDS	Shew_1987	NC_009092.1	2299821	2299988	D	PFAM: Cbb3-type cytochrome oxidase component; KEGG: sdn:Sden_1849 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit	2299821..2299988	Shewanella loihica PV-4	4921015
YP_001094113.1	CDS	Shew_1988	NC_009092.1	2299988	2300959	D	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_1966 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III	2299988..2300959	Shewanella loihica PV-4	4921016
YP_001094114.1	CDS	Shew_1989	NC_009092.1	2301070	2301549	D	KEGG: son:SO2360 hypothetical protein; hypothetical protein	2301070..2301549	Shewanella loihica PV-4	4920953
YP_001094115.1	CDS	Shew_1990	NC_009092.1	2301556	2303979	D	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase	2301556..2303979	Shewanella loihica PV-4	4920954
YP_001094116.1	CDS	Shew_1991	NC_009092.1	2303976	2304161	D	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: sdn:Sden_1845 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein	2303976..2304161	Shewanella loihica PV-4	4920955
YP_001094117.1	CDS	Shew_1992	NC_009092.1	2304158	2304850	D	KEGG: shm:Shewmr7_1962 hypothetical protein; hypothetical protein	2304158..2304850	Shewanella loihica PV-4	4920956
YP_001094118.1	CDS	Shew_1993	NC_009092.1	2304906	2305655	D	Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator	2304906..2305655	Shewanella loihica PV-4	4920957
YP_001094119.1	CDS	Shew_1994	NC_009092.1	2305750	2306682	D	with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE	2305750..2306682	Shewanella loihica PV-4	4920958
YP_001094120.1	CDS	Shew_1995	NC_009092.1	2306767	2307720	D	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase	2306767..2307720	Shewanella loihica PV-4	4920959
YP_001094121.1	CDS	Shew_1996	NC_009092.1	2307800	2308423	R	KEGG: she:Shewmr4_2017 hypothetical protein; hypothetical protein	complement(2307800..2308423)	Shewanella loihica PV-4	4920960
YP_001094122.1	CDS	Shew_1997	NC_009092.1	2308401	2309273	R	KEGG: she:Shewmr4_2018 bax protein, putative; bax protein	complement(2308401..2309273)	Shewanella loihica PV-4	4920961
YP_001094123.1	CDS	Shew_1998	NC_009092.1	2309364	2310275	D	PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein; hypothetical protein	2309364..2310275	Shewanella loihica PV-4	4920962
YP_001094124.1	CDS	Shew_1999	NC_009092.1	2310338	2311531	R	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase	complement(2310338..2311531)	Shewanella loihica PV-4	4920963
YP_001094125.1	CDS	Shew_2000	NC_009092.1	2312470	2313906	R	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase	complement(2312470..2313906)	Shewanella loihica PV-4	4921685
YP_001094126.1	CDS	Shew_2001	NC_009092.1	2314143	2314949	D	KEGG: sfr:Sfri_1941 hypothetical protein; hypothetical protein	2314143..2314949	Shewanella loihica PV-4	4920965
YP_001094127.1	CDS	Shew_2002	NC_009092.1	2315161	2316171	D	KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I	2315161..2316171	Shewanella loihica PV-4	4920966
YP_001094128.1	CDS	Shew_2003	NC_009092.1	2316289	2316621	R	hypothetical protein	complement(2316289..2316621)	Shewanella loihica PV-4	4920967
YP_001094129.1	CDS	Shew_2004	NC_009092.1	2316824	2317099	R	KEGG: vfi:VF0709 hypothetical protein; hypothetical protein	complement(2316824..2317099)	Shewanella loihica PV-4	4924255
YP_001094130.1	CDS	Shew_2005	NC_009092.1	2317214	2318545	R	PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_0489 FAD dependent oxidoreductase; FAD dependent oxidoreductase	complement(2317214..2318545)	Shewanella loihica PV-4	4924256
YP_001094131.1	CDS	Shew_2006	NC_009092.1	2318606	2319172	R	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3397 acetyltransferase, GNAT family; N-acetyltransferase GCN5	complement(2318606..2319172)	Shewanella loihica PV-4	4924257
YP_001094132.1	CDS	Shew_2007	NC_009092.1	2319294	2320373	D	KEGG: sdn:Sden_0075 hypothetical protein; hypothetical protein	2319294..2320373	Shewanella loihica PV-4	4924258
YP_001094133.1	CDS	Shew_2008	NC_009092.1	2320455	2321150	R	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vfi:VF1658 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR	complement(2320455..2321150)	Shewanella loihica PV-4	4924259
YP_001094134.1	CDS	Shew_2009	NC_009092.1	2321387	2322466	D	KEGG: pat:Patl_3439 hypothetical protein; hypothetical protein	2321387..2322466	Shewanella loihica PV-4	4924260
YP_001094135.1	CDS	Shew_2010	NC_009092.1	2323065	2324252	D	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sdn:Sden_1711 secretion protein HlyD; RND family efflux transporter MFP subunit	2323065..2324252	Shewanella loihica PV-4	4924261
YP_001094136.1	CDS	Shew_2011	NC_009092.1	2324259	2327441	D	PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_1929 acriflavin resistance protein; acriflavin resistance protein	2324259..2327441	Shewanella loihica PV-4	4924262
YP_001094137.1	CDS	Shew_2012	NC_009092.1	2327793	2329085	R	uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC	complement(2327793..2329085)	Shewanella loihica PV-4	4921686
YP_001094138.1	CDS	Shew_2013	NC_009092.1	2329217	2330119	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1974 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator	2329217..2330119	Shewanella loihica PV-4	4924264
YP_001094139.1	CDS	Shew_2014	NC_009092.1	2330344	2331003	D	PFAM: protein of unknown function UPF0005; KEGG: shm:Shewmr7_2003 protein of unknown function UPF0005; hypothetical protein	2330344..2331003	Shewanella loihica PV-4	4924265
YP_001094140.1	CDS	Shew_2015	NC_009092.1	2331189	2331578	D	PFAM: DsrE family protein; KEGG: she:Shewmr4_1972 DsrE family protein; DsrE family protein	2331189..2331578	Shewanella loihica PV-4	4924266
YP_001094141.1	CDS	Shew_2016	NC_009092.1	2331612	2331971	D	PFAM: DsrE family protein; KEGG: shm:Shewmr7_2005 DsrE family protein; DsrE family protein	2331612..2331971	Shewanella loihica PV-4	4924267
YP_001094142.1	CDS	Shew_2017	NC_009092.1	2331971	2332252	D	KEGG: sdn:Sden_1806 DsrH like protein; DsrH like protein	2331971..2332252	Shewanella loihica PV-4	4924268
YP_001094143.1	CDS	Shew_2018	NC_009092.1	2332261	2332584	D	PFAM: DsrC family protein; KEGG: sdn:Sden_1805 DsrC-like protein; DsrC family protein	2332261..2332584	Shewanella loihica PV-4	4923857
YP_001094144.1	CDS	Shew_2019	NC_009092.1	2332665	2332784	R	KEGG: son:SO2311 hypothetical protein; hypothetical protein	complement(2332665..2332784)	Shewanella loihica PV-4	4923858
YP_001094145.1	CDS	Shew_2020	NC_009092.1	2332809	2334095	R	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase	complement(2332809..2334095)	Shewanella loihica PV-4	4923859
YP_001094146.1	CDS	Shew_2021	NC_009092.1	2334115	2334489	R	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB	complement(2334115..2334489)	Shewanella loihica PV-4	4923860
YP_001094147.1	CDS	Shew_2022	NC_009092.1	2334482	2335813	R	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2011 AAA ATPase, central domain protein; recombination factor protein RarA	complement(2334482..2335813)	Shewanella loihica PV-4	4923861
YP_001094148.1	CDS	Shew_2023	NC_009092.1	2335872	2336498	R	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shm:Shewmr7_2012 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA	complement(2335872..2336498)	Shewanella loihica PV-4	4923862
YP_001094149.1	CDS	Shew_2024	NC_009092.1	2336656	2339181	R	PFAM: cell divisionFtsK/SpoIIIE; KEGG: she:Shewmr4_1963 cell divisionFtsK/SpoIIIE; cell division protein FtsK	complement(2336656..2339181)	Shewanella loihica PV-4	4923863
YP_001094150.1	CDS	Shew_2025	NC_009092.1	2339364	2339867	R	mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator	complement(2339364..2339867)	Shewanella loihica PV-4	4923864
YP_001094151.1	CDS	Shew_2026	NC_009092.1	2340047	2341162	D	TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: shm:Shewmr7_2015 alanine dehydrogenase; alanine dehydrogenase	2340047..2341162	Shewanella loihica PV-4	4923865
YP_001094152.1	CDS	Shew_2027	NC_009092.1	2341219	2341938	D	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: sfr:Sfri_1793 alanine dehydrogenase; NAD(P) transhydrogenase subunit alpha	2341219..2341938	Shewanella loihica PV-4	4923866
YP_001094153.1	CDS	Shew_2028	NC_009092.1	2342070	2343020	D	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1959 thioredoxin reductase; thioredoxin reductase	2342070..2343020	Shewanella loihica PV-4	4923867
YP_001094154.1	CDS	rplT	NC_009092.1	2343311	2343670	R	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20	complement(2343311..2343670)	Shewanella loihica PV-4	4923868
YP_001094155.1	CDS	rpmI	NC_009092.1	2343689	2343883	R	PFAM: ribosomal protein L35; KEGG: sfr:Sfri_2026 ribosomal protein L35; 50S ribosomal protein L35	complement(2343689..2343883)	Shewanella loihica PV-4	4923869
YP_001094156.1	CDS	Shew_2031	NC_009092.1	2343971	2344492	R	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3	complement(2343971..2344492)	Shewanella loihica PV-4	4923870
YP_001094157.1	CDS	Shew_2032	NC_009092.1	2344517	2346445	R	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase	complement(2344517..2346445)	Shewanella loihica PV-4	4923871
YP_001094158.1	CDS	Shew_2033	NC_009092.1	2346761	2347036	D	hypothetical protein	2346761..2347036	Shewanella loihica PV-4	4923762
YP_001094159.1	CDS	Shew_2034	NC_009092.1	2347187	2347933	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2986 pteridine reductase; short-chain dehydrogenase/reductase SDR	2347187..2347933	Shewanella loihica PV-4	4923763
YP_001094160.1	CDS	Shew_2035	NC_009092.1	2347930	2348130	D	KEGG: shm:Shewmr7_2023 hypothetical protein; hypothetical protein	2347930..2348130	Shewanella loihica PV-4	4923764
YP_001094161.1	CDS	Shew_2036	NC_009092.1	2348339	2348950	R	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha	complement(2348339..2348950)	Shewanella loihica PV-4	4923765
YP_001094162.1	CDS	Shew_2037	NC_009092.1	2348979	2350364	D	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein	2348979..2350364	Shewanella loihica PV-4	4923766
YP_001094163.1	CDS	Shew_2038	NC_009092.1	2350830	2351273	R	hypothetical protein	complement(2350830..2351273)	Shewanella loihica PV-4	4921688
YP_001094164.1	CDS	Shew_2039	NC_009092.1	2351567	2354269	D	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: she:Shewmr4_2098 CoA-binding domain protein; N-acetyltransferase GCN5	2351567..2354269	Shewanella loihica PV-4	4923768
YP_001094165.1	CDS	Shew_2040	NC_009092.1	2354424	2355467	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_1872 diguanylate cyclase; diguanylate cyclase	complement(2354424..2355467)	Shewanella loihica PV-4	4923769
YP_001094166.1	CDS	Shew_2041	NC_009092.1	2355602	2357230	R	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; hypothetical protein	complement(2355602..2357230)	Shewanella loihica PV-4	4923770
YP_001094167.1	CDS	Shew_2042	NC_009092.1	2357797	2358210	R	PFAM: regulatory protein, MarR; KEGG: ppr:PBPRA1008 putative transcriptional regulator, MarR family; MarR family transcriptional regulator	complement(2357797..2358210)	Shewanella loihica PV-4	4923771
YP_001094168.1	CDS	Shew_2043	NC_009092.1	2358253	2359341	R	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_1868 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter	complement(2358253..2359341)	Shewanella loihica PV-4	4923772
YP_001094169.1	CDS	Shew_2044	NC_009092.1	2359742	2360299	D	serine protease inhibitor, inhibits trypsin and other proteases; ecotin	2359742..2360299	Shewanella loihica PV-4	4923773
YP_001094170.1	CDS	Shew_2045	NC_009092.1	2360402	2361043	R	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	complement(2360402..2361043)	Shewanella loihica PV-4	4923774
YP_001094171.1	CDS	Shew_2046	NC_009092.1	2361065	2362891	R	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase	complement(2361065..2362891)	Shewanella loihica PV-4	4923775
YP_001094172.1	CDS	Shew_2047	NC_009092.1	2362901	2363599	R	TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase	complement(2362901..2363599)	Shewanella loihica PV-4	4923731
YP_001094173.1	CDS	Shew_2048	NC_009092.1	2363612	2365084	R	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase	complement(2363612..2365084)	Shewanella loihica PV-4	4923732
YP_001094174.1	CDS	Shew_2049	NC_009092.1	2365393	2366247	D	Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR	2365393..2366247	Shewanella loihica PV-4	4923733
YP_001094175.1	CDS	Shew_2050	NC_009092.1	2366431	2367870	D	PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase	2366431..2367870	Shewanella loihica PV-4	4923734
YP_001094176.1	CDS	Shew_2051	NC_009092.1	2368011	2370287	R	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase	complement(2368011..2370287)	Shewanella loihica PV-4	4923735
YP_001094177.1	CDS	Shew_2052	NC_009092.1	2370296	2370934	R	PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family; TetR family transcriptional regulator	complement(2370296..2370934)	Shewanella loihica PV-4	4923736
YP_001094178.1	CDS	Shew_2053	NC_009092.1	2371154	2373058	D	PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: she:Shewmr4_2051 peptidyl-dipeptidase A; peptidyl-dipeptidase A	2371154..2373058	Shewanella loihica PV-4	4923737
YP_001094179.1	CDS	Shew_2054	NC_009092.1	2373213	2373803	R	PFAM: Smr protein/MutS2; KEGG: shm:Shewmr7_1923 Smr protein/MutS2; Smr protein/MutS2	complement(2373213..2373803)	Shewanella loihica PV-4	4923738
YP_001094180.1	CDS	Shew_2055	NC_009092.1	2374292	2374858	D	KEGG: shm:Shewmr7_1922 hypothetical protein; hypothetical protein	2374292..2374858	Shewanella loihica PV-4	4923739
YP_001094181.1	CDS	Shew_2056	NC_009092.1	2374851	2375330	D	PFAM: SEC-C motif domain protein; KEGG: she:Shewmr4_2054 sec-C motif domain protein; SecC motif-containing protein	2374851..2375330	Shewanella loihica PV-4	4923740
YP_001094182.1	CDS	Shew_2057	NC_009092.1	2375454	2377643	R	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_2055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	complement(2375454..2377643)	Shewanella loihica PV-4	4923741
YP_001094183.1	CDS	Shew_2058	NC_009092.1	2377803	2378090	R	KEGG: shm:Shewmr7_1919 hypothetical protein; hypothetical protein	complement(2377803..2378090)	Shewanella loihica PV-4	4923742
YP_001094184.1	CDS	Shew_2059	NC_009092.1	2378163	2378651	R	KEGG: she:Shewmr4_2057 hypothetical protein; hypothetical protein	complement(2378163..2378651)	Shewanella loihica PV-4	4923743
YP_001094185.1	CDS	Shew_2060	NC_009092.1	2379396	2380457	D	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sdn:Sden_2013 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta	2379396..2380457	Shewanella loihica PV-4	4921691
YP_001094186.1	CDS	Shew_2061	NC_009092.1	2380599	2381267	R	PFAM: Radical SAM domain protein; KEGG: shm:Shewmr7_1917 radical activating enzyme; radical SAM domain-containing protein	complement(2380599..2381267)	Shewanella loihica PV-4	4923425
YP_001094187.1	CDS	Shew_2062	NC_009092.1	2381452	2382135	D	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: she:Shewmr4_2059 ExsB protein; exsB protein	2381452..2382135	Shewanella loihica PV-4	4923426
YP_001094188.1	CDS	Shew_2063	NC_009092.1	2382129	2382713	D	PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein; rhomboid family protein	2382129..2382713	Shewanella loihica PV-4	4923427
YP_001094189.1	CDS	Shew_2064	NC_009092.1	2382840	2384858	R	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B	complement(2382840..2384858)	Shewanella loihica PV-4	4923428
YP_001094190.1	CDS	Shew_2065	NC_009092.1	2386115	2388043	D	PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_2063 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase	2386115..2388043	Shewanella loihica PV-4	4921190
YP_001094191.1	CDS	Shew_2066	NC_009092.1	2388127	2388705	D	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E	2388127..2388705	Shewanella loihica PV-4	4923430
YP_001094192.1	CDS	Shew_2067	NC_009092.1	2388708	2389277	D	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: shm:Shewmr7_1910 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B	2388708..2389277	Shewanella loihica PV-4	4923431
YP_001094193.1	CDS	Shew_2068	NC_009092.1	2389271	2391883	D	part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC	2389271..2391883	Shewanella loihica PV-4	4923432
YP_001094194.1	CDS	rnfD	NC_009092.1	2391886	2392938	D	RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD	2391886..2392938	Shewanella loihica PV-4	4923433
YP_001094195.1	CDS	Shew_2070	NC_009092.1	2392959	2393597	D	part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG	2392959..2393597	Shewanella loihica PV-4	4923434
YP_001094196.1	CDS	Shew_2071	NC_009092.1	2393590	2394288	D	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE	2393590..2394288	Shewanella loihica PV-4	4923435
YP_001094197.1	CDS	Shew_2072	NC_009092.1	2394292	2394933	D	KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III	2394292..2394933	Shewanella loihica PV-4	4923436
YP_001094198.1	CDS	Shew_2073	NC_009092.1	2395525	2395935	D	KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase	2395525..2395935	Shewanella loihica PV-4	4923437
YP_001094199.1	CDS	Shew_2074	NC_009092.1	2395994	2398504	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2416 TonB-dependent receptor; TonB-dependent receptor	complement(2395994..2398504)	Shewanella loihica PV-4	4923438
YP_001094200.1	CDS	ruvB	NC_009092.1	2399610	2400623	R	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB	complement(2399610..2400623)	Shewanella loihica PV-4	4923439
YP_001094201.1	CDS	ruvA	NC_009092.1	2400643	2401260	R	plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA	complement(2400643..2401260)	Shewanella loihica PV-4	4923612
YP_001094202.1	CDS	ruvC	NC_009092.1	2401257	2401778	R	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase	complement(2401257..2401778)	Shewanella loihica PV-4	4923613
YP_001094203.1	CDS	Shew_2078	NC_009092.1	2401786	2402532	R	PFAM: protein of unknown function DUF28; KEGG: sdn:Sden_1886 protein of unknown function DUF28; hypothetical protein	complement(2401786..2402532)	Shewanella loihica PV-4	4923614
YP_001094204.1	CDS	aspS	NC_009092.1	2402603	2404381	R	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase	complement(2402603..2404381)	Shewanella loihica PV-4	4923615
YP_001094205.1	CDS	Shew_2080	NC_009092.1	2404551	2407355	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein, family 3; KEGG: shm:Shewmr7_2081 diguanylate cyclase; diguanylate cyclase	complement(2404551..2407355)	Shewanella loihica PV-4	4923616
YP_001094206.1	CDS	Shew_2081	NC_009092.1	2407722	2408453	D	TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2082 putative methyltransferase; putative methyltransferase	2407722..2408453	Shewanella loihica PV-4	4923617
YP_001094207.1	CDS	Shew_2082	NC_009092.1	2408450	2409442	D	TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_1895 putative methyltransferase; putative methyltransferase	2408450..2409442	Shewanella loihica PV-4	4923618
YP_001094208.1	CDS	Shew_2083	NC_009092.1	2409468	2410205	D	PFAM: protein of unknown function DUF785; KEGG: she:Shewmr4_1894 protein of unknown function DUF785; hypothetical protein	2409468..2410205	Shewanella loihica PV-4	4923619
YP_001094209.1	CDS	Shew_2084	NC_009092.1	2410221	2411726	D	KEGG: shm:Shewmr7_2085 gonadoliberin III-related protein; gonadoliberin III-like protein	2410221..2411726	Shewanella loihica PV-4	4923620
YP_001094210.1	CDS	Shew_2085	NC_009092.1	2411729	2412685	D	TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: she:Shewmr4_1892 alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein	2411729..2412685	Shewanella loihica PV-4	4923621
YP_001094211.1	CDS	Shew_2086	NC_009092.1	2412648	2414423	D	KEGG: she:Shewmr4_1891 hypothetical protein; hypothetical protein	2412648..2414423	Shewanella loihica PV-4	4923622
YP_001094212.1	CDS	Shew_2087	NC_009092.1	2414398	2415549	D	KEGG: shm:Shewmr7_2088 hypothetical protein; hypothetical protein	2414398..2415549	Shewanella loihica PV-4	4923623
YP_001094213.1	CDS	Shew_2088	NC_009092.1	2415565	2416476	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2089 transcriptional regulator, LysR family; LysR family transcriptional regulator	2415565..2416476	Shewanella loihica PV-4	4923624
YP_001094214.1	CDS	Shew_2089	NC_009092.1	2416453	2417850	R	KEGG: she:Shewmr4_1888 SrpA-related protein; SrpA-like protein	complement(2416453..2417850)	Shewanella loihica PV-4	4923625
YP_001094215.1	CDS	Shew_2090	NC_009092.1	2417854	2418123	R	KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein	complement(2417854..2418123)	Shewanella loihica PV-4	4923626
YP_001094216.1	CDS	thiH	NC_009092.1	2418226	2419344	R	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH	complement(2418226..2419344)	Shewanella loihica PV-4	4923627
YP_001094217.1	CDS	Shew_2092	NC_009092.1	2419349	2420122	R	PFAM: thiazole biosynthesis family protein; KEGG: shm:Shewmr7_2093 thiazole biosynthesis family protein; thiazole biosynthesis family protein	complement(2419349..2420122)	Shewanella loihica PV-4	4923628
YP_001094218.1	CDS	Shew_2093	NC_009092.1	2420124	2420333	R	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sdn:Sden_1773 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS	complement(2420124..2420333)	Shewanella loihica PV-4	4923629
YP_001094219.1	CDS	Shew_2094	NC_009092.1	2420326	2421174	R	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative; UBA/THIF-type NAD/FAD binding protein	complement(2420326..2421174)	Shewanella loihica PV-4	4923630
YP_001094220.1	CDS	Shew_2095	NC_009092.1	2421161	2422906	R	KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase	complement(2421161..2422906)	Shewanella loihica PV-4	4923631
YP_001094221.1	CDS	Shew_2096	NC_009092.1	2422909	2424960	R	required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC	complement(2422909..2424960)	Shewanella loihica PV-4	4923632
YP_001094222.1	CDS	Shew_2097	NC_009092.1	2425383	2426567	R	KEGG: shm:Shewmr7_2098 hypothetical protein; hypothetical protein	complement(2425383..2426567)	Shewanella loihica PV-4	4923633
YP_001094223.1	CDS	Shew_2098	NC_009092.1	2426803	2427513	D	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: she:Shewmr4_1879 channel protein, hemolysin III family; hemolysin III family channel protein	2426803..2427513	Shewanella loihica PV-4	4923634
YP_001094224.1	CDS	Shew_2099	NC_009092.1	2427487	2428056	R	PFAM: DTW domain containing protein; KEGG: cps:CPS_2423 hypothetical protein; DTW domain-containing protein	complement(2427487..2428056)	Shewanella loihica PV-4	4923635
YP_001094225.1	CDS	Shew_2100	NC_009092.1	2428211	2431447	R	KEGG: ilo:IL2566 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha	complement(2428211..2431447)	Shewanella loihica PV-4	4923636
YP_001094226.1	CDS	Shew_2101	NC_009092.1	2431447	2433501	R	KEGG: bxe:Bxe_A3165 hypothetical protein; hypothetical protein	complement(2431447..2433501)	Shewanella loihica PV-4	4923637
YP_001094227.1	CDS	Shew_2102	NC_009092.1	2433502	2434332	R	KEGG: tbd:Tbd_0830 hypothetical protein; hypothetical protein	complement(2433502..2434332)	Shewanella loihica PV-4	4923638
YP_001094228.1	CDS	def	NC_009092.1	2434634	2435125	R	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase	complement(2434634..2435125)	Shewanella loihica PV-4	4923639
YP_001094229.1	CDS	Shew_2104	NC_009092.1	2435305	2437026	D	PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_1452 hypothetical protein; major facilitator superfamily transporter	2435305..2437026	Shewanella loihica PV-4	4923640
YP_001094230.1	CDS	Shew_2105	NC_009092.1	2437406	2437756	D	PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: shm:Shewmr7_2220 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase	2437406..2437756	Shewanella loihica PV-4	4923589
YP_001094231.1	CDS	Shew_2106	NC_009092.1	2437805	2438596	D	KEGG: shm:Shewmr7_2221 hypothetical protein; hypothetical protein	2437805..2438596	Shewanella loihica PV-4	4923590
YP_001094232.1	CDS	Shew_2107	NC_009092.1	2438826	2439611	R	PFAM: glutamine amidotransferase, class-II; KEGG: she:Shewmr4_2145 glutamine amidotransferase, class-II; glutamine amidotransferase, class-II	complement(2438826..2439611)	Shewanella loihica PV-4	4923591
YP_001094233.1	CDS	fadE	NC_009092.1	2439852	2442299	D	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase	2439852..2442299	Shewanella loihica PV-4	4923592
YP_001094234.1	CDS	Shew_2109	NC_009092.1	2442406	2444337	R	PFAM: sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2224 sodium/hydrogen exchanger; sodium/hydrogen exchanger	complement(2442406..2444337)	Shewanella loihica PV-4	4923593
YP_001094235.1	CDS	Shew_2110	NC_009092.1	2445616	2446938	R	KEGG: shm:Shewmr7_2233 hypothetical protein; hypothetical protein	complement(2445616..2446938)	Shewanella loihica PV-4	4921193
YP_001094236.1	CDS	Shew_2111	NC_009092.1	2446949	2447677	R	KEGG: shm:Shewmr7_2234 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon	complement(2446949..2447677)	Shewanella loihica PV-4	4923595
YP_001094237.1	CDS	rnhA	NC_009092.1	2447746	2448222	D	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H	2447746..2448222	Shewanella loihica PV-4	4923596
YP_001094238.1	CDS	Shew_2113	NC_009092.1	2448267	2448989	R	KEGG: son:SO2562 hypothetical protein; hypothetical protein	complement(2448267..2448989)	Shewanella loihica PV-4	4923597
YP_001094239.1	CDS	Shew_2114	NC_009092.1	2449127	2449909	D	PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_2238 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase	2449127..2449909	Shewanella loihica PV-4	4923598
YP_001094240.1	CDS	Shew_2115	NC_009092.1	2450005	2451540	D	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: she:Shewmr4_2162 MLTD_N domain protein; lytic transglycosylase, catalytic	2450005..2451540	Shewanella loihica PV-4	4923599
YP_001094241.1	CDS	Shew_2116	NC_009092.1	2451758	2453602	R	PFAM: AsmA family protein; KEGG: she:Shewmr4_2164 AsmA family protein; AsmA family protein	complement(2451758..2453602)	Shewanella loihica PV-4	4923600
YP_001094242.1	CDS	Shew_2117	NC_009092.1	2453640	2454134	R	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA	complement(2453640..2454134)	Shewanella loihica PV-4	4923601
YP_001094243.1	CDS	Shew_2118	NC_009092.1	2454344	2454658	D	KEGG: son:SO2569 hypothetical protein; hypothetical protein	2454344..2454658	Shewanella loihica PV-4	4923602
YP_001094244.1	CDS	Shew_2119	NC_009092.1	2454694	2456340	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: sfr:Sfri_2212 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(2454694..2456340)	Shewanella loihica PV-4	4923485
YP_001094245.1	CDS	Shew_2120	NC_009092.1	2456566	2457546	D	KEGG: vvy:VV2031 hypothetical protein; hypothetical protein	2456566..2457546	Shewanella loihica PV-4	4923486
YP_001094246.1	CDS	Shew_2121	NC_009092.1	2457561	2458919	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: sfr:Sfri_3387 diguanylate cyclase; diguanylate cyclase	2457561..2458919	Shewanella loihica PV-4	4923487
YP_001094247.1	CDS	Shew_2122	NC_009092.1	2458916	2459533	R	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ	complement(2458916..2459533)	Shewanella loihica PV-4	4923488
YP_001094248.1	CDS	Shew_2123	NC_009092.1	2459572	2460582	R	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY	complement(2459572..2460582)	Shewanella loihica PV-4	4923489
YP_001094249.1	CDS	Shew_2124	NC_009092.1	2460779	2462254	D	PFAM: protein of unknown function DUF195; KEGG: shm:Shewmr7_1864 protein of unknown function DUF195; hypothetical protein	2460779..2462254	Shewanella loihica PV-4	4923490
YP_001094250.1	CDS	Shew_2125	NC_009092.1	2462346	2464283	D	PFAM: Lytic transglycosylase, catalytic; KEGG: sfr:Sfri_2529 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic	2462346..2464283	Shewanella loihica PV-4	4923491
YP_001094251.1	CDS	Shew_2126	NC_009092.1	2464627	2465538	D	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1856 ATPase associated with various cellular activities, AAA_3; ATPase	2464627..2465538	Shewanella loihica PV-4	4923492
YP_001094252.1	CDS	Shew_2127	NC_009092.1	2465557	2466561	D	PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1855 protein of unknown function DUF58; hypothetical protein	2465557..2466561	Shewanella loihica PV-4	4923493
YP_001094253.1	CDS	Shew_2128	NC_009092.1	2466551	2468593	D	PFAM: transglutaminase domain protein; KEGG: she:Shewmr4_1776 transglutaminase domain protein; transglutaminase domain-containing protein	2466551..2468593	Shewanella loihica PV-4	4923494
YP_001094254.1	CDS	Shew_2129	NC_009092.1	2468812	2472390	D	TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: she:Shewmr4_1775 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma	2468812..2472390	Shewanella loihica PV-4	4923495
YP_001094255.1	CDS	Shew_2130	NC_009092.1	2472392	2476063	D	TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: she:Shewmr4_1774 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta	2472392..2476063	Shewanella loihica PV-4	4923496
YP_001094256.1	CDS	Shew_2131	NC_009092.1	2476060	2478048	D	TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: she:Shewmr4_1773 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha	2476060..2478048	Shewanella loihica PV-4	4923497
YP_001094257.1	CDS	Shew_2132	NC_009092.1	2478045	2478968	D	hypothetical protein	2478045..2478968	Shewanella loihica PV-4	4923498
YP_001094258.1	CDS	ddl	NC_009092.1	2479110	2480114	D	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A	2479110..2480114	Shewanella loihica PV-4	4923499
YP_001094259.1	CDS	Shew_2134	NC_009092.1	2480209	2480646	R	PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20	complement(2480209..2480646)	Shewanella loihica PV-4	4923354
YP_001094260.1	CDS	ushA	NC_009092.1	2481047	2482750	R	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic	complement(2481047..2482750)	Shewanella loihica PV-4	4923355
YP_001094261.1	CDS	Shew_2136	NC_009092.1	2483355	2484029	R	PFAM: phospholipase/Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase	complement(2483355..2484029)	Shewanella loihica PV-4	4923356
YP_001094262.1	CDS	Shew_2137	NC_009092.1	2484221	2485240	D	PFAM: Glutathione S-transferase, C-terminal domain; KEGG: ppr:PBPRA2730 putative glutathione S-transferase; glutathione S-transferase domain-containing protein	2484221..2485240	Shewanella loihica PV-4	4923357
YP_001094263.1	CDS	Shew_2138	NC_009092.1	2485285	2485509	R	KEGG: vch:VCA0579 hypothetical protein; hypothetical protein	complement(2485285..2485509)	Shewanella loihica PV-4	4923358
YP_001094264.1	CDS	Shew_2139	NC_009092.1	2485607	2486089	R	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sdn:Sden_2140 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type	complement(2485607..2486089)	Shewanella loihica PV-4	4923359
YP_001094265.1	CDS	Shew_2140	NC_009092.1	2486164	2487036	R	KEGG: shm:Shewmr7_1781 hypothetical protein; hypothetical protein	complement(2486164..2487036)	Shewanella loihica PV-4	4923360
YP_001094266.1	CDS	Shew_2141	NC_009092.1	2487318	2488505	R	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase	complement(2487318..2488505)	Shewanella loihica PV-4	4923361
YP_001094267.1	CDS	Shew_2142	NC_009092.1	2488761	2489135	D	KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein	2488761..2489135	Shewanella loihica PV-4	4923362
YP_001094268.1	CDS	Shew_2143	NC_009092.1	2489193	2489876	D	KEGG: son:SO1990 hypothetical protein; hypothetical protein	2489193..2489876	Shewanella loihica PV-4	4923363
YP_001094269.1	CDS	Shew_2144	NC_009092.1	2489931	2490884	R	PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV; response regulator receiver modulated CheW protein	complement(2489931..2490884)	Shewanella loihica PV-4	4923364
YP_001094270.1	CDS	Shew_2145	NC_009092.1	2490993	2492606	R	PFAM: MscS Mechanosensitive ion channel; KEGG: vvy:VVA1412 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS	complement(2490993..2492606)	Shewanella loihica PV-4	4923365
YP_001094271.1	CDS	Shew_2146	NC_009092.1	2493096	2493269	D	KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein	2493096..2493269	Shewanella loihica PV-4	4923366
YP_001094272.1	CDS	Shew_2147	NC_009092.1	2493419	2494345	R	KEGG: she:Shewmr4_2279 hypothetical protein; hypothetical protein	complement(2493419..2494345)	Shewanella loihica PV-4	4923367
YP_001094273.1	CDS	Shew_2148	NC_009092.1	2494575	2494982	D	PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein	2494575..2494982	Shewanella loihica PV-4	4923320
YP_001094274.1	CDS	Shew_2149	NC_009092.1	2495069	2495929	R	KEGG: she:Shewmr4_2283 conserved hypothetical ABC transporter protein; ABC transporter	complement(2495069..2495929)	Shewanella loihica PV-4	4923321
YP_001094275.1	CDS	Shew_2150	NC_009092.1	2496066	2496293	D	KEGG: shm:Shewmr7_2356 integral membrane protein TerC; integral membrane protein TerC	2496066..2496293	Shewanella loihica PV-4	4923322
YP_001094276.1	CDS	Shew_2151	NC_009092.1	2496410	2496787	R	KEGG: she:Shewmr4_2286 hypothetical protein; hypothetical protein	complement(2496410..2496787)	Shewanella loihica PV-4	4923323
YP_001094277.1	CDS	Shew_2152	NC_009092.1	2497142	2497486	D	KEGG: son:SO1968 hypothetical protein; hypothetical protein	2497142..2497486	Shewanella loihica PV-4	4923324
YP_001094278.1	CDS	Shew_2153	NC_009092.1	2497592	2498497	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(2497592..2498497)	Shewanella loihica PV-4	4923325
YP_001094279.1	CDS	Shew_2154	NC_009092.1	2498652	2499812	D	PFAM: homogentisate 1,2-dioxygenase; KEGG: shm:Shewmr7_2363 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase	2498652..2499812	Shewanella loihica PV-4	4923326
YP_001094280.1	CDS	Shew_2155	NC_009092.1	2499904	2500944	D	KEGG: sdn:Sden_2163 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase	2499904..2500944	Shewanella loihica PV-4	4923327
YP_001094281.1	CDS	Shew_2156	NC_009092.1	2501071	2501688	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_2328 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	2501071..2501688	Shewanella loihica PV-4	4923328
YP_001094282.1	CDS	Shew_2157	NC_009092.1	2501729	2503096	R	PFAM: protein of unknown function DUF482; KEGG: sdn:Sden_1656 protein of unknown function DUF482; hypothetical protein	complement(2501729..2503096)	Shewanella loihica PV-4	4923329
YP_001094283.1	CDS	Shew_2158	NC_009092.1	2503215	2504945	D	KEGG: she:Shewmr4_2297 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase	2503215..2504945	Shewanella loihica PV-4	4923330
YP_001094284.1	CDS	Shew_2159	NC_009092.1	2505029	2506600	R	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: shm:Shewmr7_1220 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor	complement(2505029..2506600)	Shewanella loihica PV-4	4923331
YP_001094285.1	CDS	Shew_2160	NC_009092.1	2506721	2508457	R	KEGG: she:Shewmr4_2301 dipeptidase, putative; TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; peptidase dimerisation domain protein; hypothetical protein	complement(2506721..2508457)	Shewanella loihica PV-4	4923332
YP_001094286.1	CDS	Shew_2161	NC_009092.1	2508721	2510901	D	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: she:Shewmr4_2302 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp	2508721..2510901	Shewanella loihica PV-4	4923333
YP_001094287.1	CDS	cpdB	NC_009092.1	2511207	2513291	D	periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein	2511207..2513291	Shewanella loihica PV-4	4923337
YP_001094288.1	CDS	Shew_2163	NC_009092.1	2513415	2514017	D	PFAM: protein of unknown function DUF938; Methyltransferase type 11; KEGG: sfr:Sfri_2306 protein of unknown function DUF938; hypothetical protein	2513415..2514017	Shewanella loihica PV-4	4923338
YP_001094289.1	CDS	Shew_2164	NC_009092.1	2514130	2515920	R	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sfr:Sfri_2744 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	complement(2514130..2515920)	Shewanella loihica PV-4	4923339
YP_001094290.1	CDS	Shew_2165	NC_009092.1	2516172	2517026	D	PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_2460 aldose 1-epimerase; aldose 1-epimerase	2516172..2517026	Shewanella loihica PV-4	4923340
YP_001094291.1	CDS	Shew_2166	NC_009092.1	2517223	2521146	D	KEGG: she:Shewmr4_1791 hypothetical protein; hypothetical protein	2517223..2521146	Shewanella loihica PV-4	4923341
YP_001094292.1	CDS	Shew_2167	NC_009092.1	2521273	2521473	D	KEGG: son:SO2063 hypothetical protein; hypothetical protein	2521273..2521473	Shewanella loihica PV-4	4923342
YP_001094293.1	CDS	Shew_2168	NC_009092.1	2521495	2521815	D	PFAM: uncharacterized conserved protein UCP025560; KEGG: shm:Shewmr7_2188 uncharacterized conserved protein UCP025560; hypothetical protein	2521495..2521815	Shewanella loihica PV-4	4923343
YP_001094294.1	CDS	Shew_2169	NC_009092.1	2522015	2522944	R	KEGG: pat:Patl_2065 UspA; hypothetical protein	complement(2522015..2522944)	Shewanella loihica PV-4	4923344
YP_001094295.1	CDS	Shew_2170	NC_009092.1	2523232	2526069	R	PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_1534 PKD domain containing protein; endonuclease/exonuclease/phosphatase	complement(2523232..2526069)	Shewanella loihica PV-4	4923345
YP_001094296.1	CDS	Shew_2171	NC_009092.1	2526494	2527540	R	PFAM: peptidase T2, asparaginase 2; KEGG: shm:Shewmr7_2140 peptidase T2, asparaginase 2; peptidase T2, asparaginase 2	complement(2526494..2527540)	Shewanella loihica PV-4	4923346
YP_001094297.1	CDS	Shew_2172	NC_009092.1	2527611	2529521	D	PFAM: surface antigen (D15); KEGG: she:Shewmr4_1836 surface antigen (D15); surface antigen (D15)	2527611..2529521	Shewanella loihica PV-4	4923347
YP_001094298.1	CDS	Shew_2173	NC_009092.1	2529518	2533417	D	PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein; hypothetical protein	2529518..2533417	Shewanella loihica PV-4	4923348
YP_001094299.1	CDS	Shew_2174	NC_009092.1	2533507	2534268	R	Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator	complement(2533507..2534268)	Shewanella loihica PV-4	4923349
YP_001094300.1	CDS	nhaB	NC_009092.1	2534567	2536162	D	involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter	2534567..2536162	Shewanella loihica PV-4	4923350
YP_001094301.1	CDS	Shew_2176	NC_009092.1	2536250	2536765	D	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B	2536250..2536765	Shewanella loihica PV-4	4923351
YP_001094302.1	CDS	Shew_2177	NC_009092.1	2537678	2538274	R	hypothetical protein	complement(2537678..2538274)	Shewanella loihica PV-4	4923276
YP_001094303.1	CDS	Shew_2178	NC_009092.1	2538406	2538651	R	hypothetical protein	complement(2538406..2538651)	Shewanella loihica PV-4	4923277
YP_001094304.1	CDS	Shew_2179	NC_009092.1	2538800	2539717	R	KEGG: mlo:msl8646 hypothetical protein; hypothetical protein	complement(2538800..2539717)	Shewanella loihica PV-4	4923278
YP_001094305.1	CDS	Shew_2180	NC_009092.1	2539707	2540279	R	KEGG: cte:CT0680 hypothetical protein; hypothetical protein	complement(2539707..2540279)	Shewanella loihica PV-4	4923279
YP_001094306.1	CDS	Shew_2181	NC_009092.1	2541432	2541911	R	PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_1632 uncharacterized conserved protein UCP006173; hypothetical protein	complement(2541432..2541911)	Shewanella loihica PV-4	4923280
YP_001094307.1	CDS	Shew_2182	NC_009092.1	2541987	2542976	R	KEGG: shm:Shewmr7_2248 putative transglycosylase; putative transglycosylase	complement(2541987..2542976)	Shewanella loihica PV-4	4923281
YP_001094308.1	CDS	Shew_2183	NC_009092.1	2543261	2543542	R	PFAM: protein of unknown function DUF709; KEGG: sdn:Sden_1630 protein of unknown function DUF709; hypothetical protein	complement(2543261..2543542)	Shewanella loihica PV-4	4923282
YP_001094309.1	CDS	minC	NC_009092.1	2543669	2544334	D	blocks the formation of polar Z-ring septums; septum formation inhibitor	2543669..2544334	Shewanella loihica PV-4	4923283
YP_001094310.1	CDS	Shew_2185	NC_009092.1	2544359	2545168	D	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_2251 septum site-determining protein MinD; septum site-determining protein MinD	2544359..2545168	Shewanella loihica PV-4	4923284
YP_001094311.1	CDS	Shew_2186	NC_009092.1	2545171	2545431	D	TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: sfr:Sfri_1735 cell division topological specificity factor MinE; cell division topological specificity factor MinE	2545171..2545431	Shewanella loihica PV-4	4923285
YP_001094312.1	CDS	Shew_2187	NC_009092.1	2545541	2546647	R	TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D; ribonuclease D	complement(2545541..2546647)	Shewanella loihica PV-4	4923286
YP_001094313.1	CDS	Shew_2188	NC_009092.1	2546738	2548411	R	Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase	complement(2546738..2548411)	Shewanella loihica PV-4	4923287
YP_001094314.1	CDS	Shew_2189	NC_009092.1	2548610	2549545	R	KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold; alpha/beta hydrolase	complement(2548610..2549545)	Shewanella loihica PV-4	4923288
YP_001094315.1	CDS	Shew_2190	NC_009092.1	2549548	2550396	R	KEGG: sdn:Sden_1623 hypothetical protein; hypothetical protein	complement(2549548..2550396)	Shewanella loihica PV-4	4923289
YP_001094316.1	CDS	Shew_2191	NC_009092.1	2550479	2551180	R	KEGG: son:SO2584 hypothetical protein; hypothetical protein	complement(2550479..2551180)	Shewanella loihica PV-4	4923105
YP_001094317.1	CDS	Shew_2192	NC_009092.1	2551326	2551697	R	KEGG: sdn:Sden_1621 hypothetical protein; hypothetical protein	complement(2551326..2551697)	Shewanella loihica PV-4	4923106
YP_001094318.1	CDS	Shew_2193	NC_009092.1	2551763	2552506	R	PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease	complement(2551763..2552506)	Shewanella loihica PV-4	4923107
YP_001094319.1	CDS	Shew_2194	NC_009092.1	2552936	2553853	D	PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_2651 protein of unknown function DUF6, transmembrane; hypothetical protein	2552936..2553853	Shewanella loihica PV-4	4923108
YP_001094320.1	CDS	Shew_2195	NC_009092.1	2553866	2555167	D	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAb0118 respiratory NADH dehydrogenase II; NADH dehydrogenase	2553866..2555167	Shewanella loihica PV-4	4923109
YP_001094321.1	CDS	Shew_2196	NC_009092.1	2555180	2557105	R	SMART: helicase c2; DEAD-like helicases-like; KEGG: shm:Shewmr7_2172 helicase C2; helicase c2	complement(2555180..2557105)	Shewanella loihica PV-4	4923110
YP_001094322.1	CDS	hisG	NC_009092.1	2557577	2558476	D	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase	2557577..2558476	Shewanella loihica PV-4	4923111
YP_001094323.1	CDS	hisD	NC_009092.1	2558481	2559812	D	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase	2558481..2559812	Shewanella loihica PV-4	4923112
YP_001094324.1	CDS	Shew_2199	NC_009092.1	2559814	2560896	D	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase	2559814..2560896	Shewanella loihica PV-4	4923113
YP_001094325.1	CDS	Shew_2200	NC_009092.1	2560961	2562031	D	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase	2560961..2562031	Shewanella loihica PV-4	4923114
YP_001094326.1	CDS	hisH	NC_009092.1	2562028	2562702	D	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH	2562028..2562702	Shewanella loihica PV-4	4923115
YP_001094327.1	CDS	Shew_2202	NC_009092.1	2562699	2563436	D	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	2562699..2563436	Shewanella loihica PV-4	4923116
YP_001094328.1	CDS	Shew_2203	NC_009092.1	2563418	2564191	D	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF	2563418..2564191	Shewanella loihica PV-4	4923117
YP_001094329.1	CDS	Shew_2204	NC_009092.1	2564220	2564840	D	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase	2564220..2564840	Shewanella loihica PV-4	4923118
YP_001094330.1	CDS	Shew_2205	NC_009092.1	2565206	2566408	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_0667 response regulator receiver domain protein (CheY-like); diguanylate cyclase	2565206..2566408	Shewanella loihica PV-4	4923119
YP_001094331.1	CDS	Shew_2206	NC_009092.1	2566806	2567546	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_01757 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two component transcriptional regulator	2566806..2567546	Shewanella loihica PV-4	4923027
YP_001094332.1	CDS	Shew_2207	NC_009092.1	2567553	2569835	D	PFAM: TPR repeat-containing protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pha:PSHAa0111 hypothetical protein; integral membrane sensor signal transduction histidine kinase	2567553..2569835	Shewanella loihica PV-4	4923028
YP_001094333.1	CDS	Shew_2208	NC_009092.1	2570346	2572163	D	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin	2570346..2572163	Shewanella loihica PV-4	4923029
YP_001094334.1	CDS	Shew_2209	NC_009092.1	2572977	2576453	D	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; PKD domain containing protein; Proprotein convertase, P; KEGG: sdn:Sden_3093 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin	2572977..2576453	Shewanella loihica PV-4	4923030
YP_001094335.1	CDS	Shew_2210	NC_009092.1	2576535	2577746	D	PFAM: Proprotein convertase, P; KEGG: pha:PSHAb0200 putative secreted serine protease, subtilisin family, possibly excreted; proprotein convertase, P	2576535..2577746	Shewanella loihica PV-4	4923031
YP_001094336.1	CDS	Shew_2211	NC_009092.1	2578022	2579128	D	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase	2578022..2579128	Shewanella loihica PV-4	4923032
YP_001094337.1	CDS	Shew_2212	NC_009092.1	2579958	2582120	D	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: she:Shewmr4_1525 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp	2579958..2582120	Shewanella loihica PV-4	4923033
YP_001094338.1	CDS	Shew_2213	NC_009092.1	2582237	2583172	R	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	complement(2582237..2583172)	Shewanella loihica PV-4	4923034
YP_001094339.1	CDS	ihfA	NC_009092.1	2583293	2583589	R	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha	complement(2583293..2583589)	Shewanella loihica PV-4	4923035
YP_001094340.1	CDS	pheT	NC_009092.1	2583594	2585981	R	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta	complement(2583594..2585981)	Shewanella loihica PV-4	4923036
YP_001094341.1	CDS	pheS	NC_009092.1	2585997	2587007	R	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha	complement(2585997..2587007)	Shewanella loihica PV-4	4923037
YP_001094342.1	CDS	Shew_2217	NC_009092.1	2587373	2588875	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2170 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	2587373..2588875	Shewanella loihica PV-4	4923038
YP_001094343.1	CDS	Shew_2218	NC_009092.1	2589005	2591644	D	TIGRFAM: PAS sensor protein; PFAM: histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; KEGG: son:SO2889 sensory box histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism	2589005..2591644	Shewanella loihica PV-4	4923039
YP_001094344.1	CDS	Shew_2219	NC_009092.1	2591703	2592629	R	PFAM: protein of unknown function DUF785; KEGG: she:Shewmr4_1564 protein of unknown function DUF785; hypothetical protein	complement(2591703..2592629)	Shewanella loihica PV-4	4923040
YP_001094345.1	CDS	Shew_2220	NC_009092.1	2592688	2593062	R	KEGG: she:Shewmr4_1563 hypothetical protein; hypothetical protein	complement(2592688..2593062)	Shewanella loihica PV-4	4923216
YP_001094346.1	CDS	Shew_2221	NC_009092.1	2593080	2593373	R	hypothetical protein	complement(2593080..2593373)	Shewanella loihica PV-4	4923217
YP_001094347.1	CDS	Shew_2222	NC_009092.1	2593467	2593817	R	KEGG: son:SO2891 hypothetical protein; hypothetical protein	complement(2593467..2593817)	Shewanella loihica PV-4	4923218
YP_001094348.1	CDS	Shew_2223	NC_009092.1	2593937	2594524	R	PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein; hypothetical protein	complement(2593937..2594524)	Shewanella loihica PV-4	4923219
YP_001094349.1	CDS	Shew_2224	NC_009092.1	2594700	2597396	R	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I	complement(2594700..2597396)	Shewanella loihica PV-4	4923220
YP_001094350.1	CDS	Shew_2225	NC_009092.1	2597707	2599044	D	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase	2597707..2599044	Shewanella loihica PV-4	4923221
YP_001094351.1	CDS	Shew_2226	NC_009092.1	2599683	2602142	R	PFAM: Ig domain protein, group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein	complement(2599683..2602142)	Shewanella loihica PV-4	4923222
YP_001094352.1	CDS	Shew_2227	NC_009092.1	2602359	2603678	D	PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_1657 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter	2602359..2603678	Shewanella loihica PV-4	4923223
YP_001094353.1	CDS	Shew_2228	NC_009092.1	2603816	2605120	R	PFAM: PfkB domain protein; KEGG: shm:Shewmr7_2319 inosine kinase; inosine kinase	complement(2603816..2605120)	Shewanella loihica PV-4	4923224
YP_001094354.1	CDS	hemH	NC_009092.1	2605318	2606331	R	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase	complement(2605318..2606331)	Shewanella loihica PV-4	4923225
YP_001094355.1	CDS	adk	NC_009092.1	2606468	2607112	R	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase	complement(2606468..2607112)	Shewanella loihica PV-4	4923226
YP_001094356.1	CDS	Shew_2231	NC_009092.1	2607656	2608495	R	PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_2322 thioredoxin domain; thioredoxin domain-containing protein	complement(2607656..2608495)	Shewanella loihica PV-4	4923227
YP_001094357.1	CDS	Shew_2232	NC_009092.1	2608616	2610535	R	molecular chaperone; heat shock protein 90	complement(2608616..2610535)	Shewanella loihica PV-4	4923228
YP_001094358.1	CDS	recR	NC_009092.1	2610691	2611290	R	involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR	complement(2610691..2611290)	Shewanella loihica PV-4	4923229
YP_001094359.1	CDS	Shew_2234	NC_009092.1	2611293	2611622	R	PFAM: conserved hypothetical protein 103; KEGG: sdn:Sden_2380 conserved hypothetical protein 103; hypothetical protein	complement(2611293..2611622)	Shewanella loihica PV-4	4923230
YP_001094360.1	CDS	Shew_2235	NC_009092.1	2611845	2615186	R	KEGG: shm:Shewmr7_2326 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau	complement(2611845..2615186)	Shewanella loihica PV-4	4922871
YP_001094361.1	CDS	Shew_2236	NC_009092.1	2615571	2616164	R	KEGG: sdn:Sden_2382 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase	complement(2615571..2616164)	Shewanella loihica PV-4	4922872
YP_001094362.1	CDS	Shew_2237	NC_009092.1	2616285	2616653	R	PFAM: protein of unknown function DUF454; KEGG: shm:Shewmr7_2328 protein of unknown function DUF454; hypothetical protein	complement(2616285..2616653)	Shewanella loihica PV-4	4922873
YP_001094363.1	CDS	Shew_2238	NC_009092.1	2616748	2616870	R	KEGG: shm:Shewmr7_2329 hypothetical protein; hypothetical protein	complement(2616748..2616870)	Shewanella loihica PV-4	4922874
YP_001094364.1	CDS	Shew_2239	NC_009092.1	2616973	2617716	R	KEGG: sfr:Sfri_2411 hypothetical protein; hypothetical protein	complement(2616973..2617716)	Shewanella loihica PV-4	4922875
YP_001094365.1	CDS	Shew_2240	NC_009092.1	2617717	2618553	R	PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: sfr:Sfri_2412 protein of unknown function DUF692; hypothetical protein	complement(2617717..2618553)	Shewanella loihica PV-4	4922876
YP_001094366.1	CDS	Shew_2241	NC_009092.1	2618656	2619096	R	KEGG: sfr:Sfri_2413 hypothetical protein; hypothetical protein	complement(2618656..2619096)	Shewanella loihica PV-4	4922877
YP_001094367.1	CDS	Shew_2242	NC_009092.1	2619538	2620467	D	PFAM: dihydrouridine synthase, DuS; KEGG: cps:CPS_0906 NifR3/Smm1 family protein; dihydrouridine synthase, DuS	2619538..2620467	Shewanella loihica PV-4	4922878
YP_001094368.1	CDS	Shew_2243	NC_009092.1	2620720	2621076	D	KEGG: shm:Shewmr7_2334 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator	2620720..2621076	Shewanella loihica PV-4	4922879
YP_001094369.1	CDS	Shew_2244	NC_009092.1	2621298	2623976	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2335 TonB-dependent receptor; TonB-dependent receptor	complement(2621298..2623976)	Shewanella loihica PV-4	4922880
YP_001094370.1	CDS	Shew_2245	NC_009092.1	2624567	2625481	R	KEGG: son:SO2936 hypothetical protein; hypothetical protein	complement(2624567..2625481)	Shewanella loihica PV-4	4922881
YP_001094371.1	CDS	Shew_2246	NC_009092.1	2625784	2626665	R	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_1533 pseudouridine synthase, Rsu; pseudouridine synthase	complement(2625784..2626665)	Shewanella loihica PV-4	4922882
YP_001094372.1	CDS	Shew_2247	NC_009092.1	2626643	2627275	R	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shm:Shewmr7_1532 putative transcriptional regulator; putative transcriptional regulator	complement(2626643..2627275)	Shewanella loihica PV-4	4922883
YP_001094373.1	CDS	Shew_2248	NC_009092.1	2627276	2628064	R	PFAM: chromosome segregation and condensation protein ScpA; KEGG: she:Shewmr4_1465 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA	complement(2627276..2628064)	Shewanella loihica PV-4	4922884
YP_001094374.1	CDS	Shew_2249	NC_009092.1	2628228	2628848	R	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: shm:Shewmr7_1530 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein	complement(2628228..2628848)	Shewanella loihica PV-4	4922802
YP_001094375.1	CDS	Shew_2250	NC_009092.1	2628845	2629705	R	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sdn:Sden_2449 PHP-like protein; phosphotransferase domain-containing protein	complement(2628845..2629705)	Shewanella loihica PV-4	4922803
YP_001094376.1	CDS	Shew_2251	NC_009092.1	2630153	2631706	D	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I	2630153..2631706	Shewanella loihica PV-4	4922804
YP_001094377.1	CDS	Shew_2252	NC_009092.1	2631703	2632311	D	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II	2631703..2632311	Shewanella loihica PV-4	4922805
YP_001094378.1	CDS	trpD	NC_009092.1	2632314	2633363	D	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase	2632314..2633363	Shewanella loihica PV-4	4922806
YP_001094379.1	CDS	Shew_2254	NC_009092.1	2633363	2634814	D	monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase	2633363..2634814	Shewanella loihica PV-4	4922807
YP_001094380.1	CDS	Shew_2255	NC_009092.1	2634863	2636074	D	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta	2634863..2636074	Shewanella loihica PV-4	4922808
YP_001094381.1	CDS	trpA	NC_009092.1	2636067	2636870	D	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha	2636067..2636870	Shewanella loihica PV-4	4922809
YP_001094382.1	CDS	Shew_2257	NC_009092.1	2637166	2637789	D	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdn:Sden_0759 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase	2637166..2637789	Shewanella loihica PV-4	4922810
YP_001094383.1	CDS	Shew_2258	NC_009092.1	2637883	2638413	D	PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: sfr:Sfri_3246 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30	2637883..2638413	Shewanella loihica PV-4	4922811
YP_001094384.1	CDS	Shew_2259	NC_009092.1	2638573	2639775	R	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sfr:Sfri_1823 metal dependent phosphohydrolase; metal dependent phosphohydrolase	complement(2638573..2639775)	Shewanella loihica PV-4	4922812
YP_001094385.1	CDS	Shew_2260	NC_009092.1	2640162	2640707	D	Involved in cell division; probably involved in intracellular septation; intracellular septation protein A	2640162..2640707	Shewanella loihica PV-4	4922813
YP_001094386.1	CDS	Shew_2261	NC_009092.1	2640707	2641006	D	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein	2640707..2641006	Shewanella loihica PV-4	4922814
YP_001094387.1	CDS	Shew_2262	NC_009092.1	2641030	2641839	D	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III	2641030..2641839	Shewanella loihica PV-4	4922815
YP_001094388.1	CDS	Shew_2263	NC_009092.1	2641915	2643363	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_1507 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(2641915..2643363)	Shewanella loihica PV-4	4922618
YP_001094389.1	CDS	Shew_2264	NC_009092.1	2643435	2643929	R	PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein; hypothetical protein	complement(2643435..2643929)	Shewanella loihica PV-4	4922619
YP_001094390.1	CDS	Shew_2265	NC_009092.1	2644164	2646407	R	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: shm:Shewmr7_1505 twin-arginine translocation pathway signal; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase	complement(2644164..2646407)	Shewanella loihica PV-4	4922620
YP_001094391.1	CDS	Shew_2266	NC_009092.1	2646404	2646910	R	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_1414 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein	complement(2646404..2646910)	Shewanella loihica PV-4	4922621
YP_001094392.1	CDS	Shew_2267	NC_009092.1	2646990	2647736	R	KEGG: sdn:Sden_2225 hypothetical protein; hypothetical protein	complement(2646990..2647736)	Shewanella loihica PV-4	4922622
YP_001094393.1	CDS	Shew_2268	NC_009092.1	2647733	2648830	R	PFAM: protein of unknown function DUF182; KEGG: sdn:Sden_2226 protein of unknown function DUF182; hypothetical protein	complement(2647733..2648830)	Shewanella loihica PV-4	4922623
YP_001094394.1	CDS	Shew_2269	NC_009092.1	2649007	2649651	R	PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein	complement(2649007..2649651)	Shewanella loihica PV-4	4922624
YP_001094395.1	CDS	Shew_2270	NC_009092.1	2649838	2651127	D	PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase; alpha/beta hydrolase	2649838..2651127	Shewanella loihica PV-4	4922625
YP_001094396.1	CDS	Shew_2271	NC_009092.1	2652156	2653775	D	KEGG: she:Shewmr4_2330 hypothetical protein; hypothetical protein	2652156..2653775	Shewanella loihica PV-4	4922626
YP_001094397.1	CDS	Shew_2272	NC_009092.1	2653796	2654341	D	hypothetical protein	2653796..2654341	Shewanella loihica PV-4	4922627
YP_001094398.1	CDS	Shew_2273	NC_009092.1	2654978	2655991	R	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein	complement(2654978..2655991)	Shewanella loihica PV-4	4922628
YP_001094399.1	CDS	Shew_2274	NC_009092.1	2656418	2658226	D	SMART: AAA ATPase; KEGG: cte:CT0993 hypothetical protein; ATPase AAA	2656418..2658226	Shewanella loihica PV-4	4922629
YP_001094400.1	CDS	Shew_2275	NC_009092.1	2658261	2659058	R	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: sfr:Sfri_1824 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B	complement(2658261..2659058)	Shewanella loihica PV-4	4922630
YP_001094401.1	CDS	Shew_2276	NC_009092.1	2659181	2660155	R	KEGG: nwi:Nwi_2675 glutathione S-transferase; glutathione S-transferase	complement(2659181..2660155)	Shewanella loihica PV-4	4922631
YP_001094402.1	CDS	Shew_2277	NC_009092.1	2660234	2660674	R	PFAM: DoxX family protein; KEGG: son:SO3319 hypothetical protein; DoxX family protein	complement(2660234..2660674)	Shewanella loihica PV-4	4922632
YP_001094403.1	CDS	Shew_2278	NC_009092.1	2660936	2661850	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: par:Psyc_1132 probable transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(2660936..2661850)	Shewanella loihica PV-4	4922300
YP_001094404.1	CDS	Shew_2279	NC_009092.1	2662064	2662444	R	KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c	complement(2662064..2662444)	Shewanella loihica PV-4	4922301
YP_001094405.1	CDS	Shew_2280	NC_009092.1	2662512	2664170	R	PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase	complement(2662512..2664170)	Shewanella loihica PV-4	4922302
YP_001094406.1	CDS	Shew_2281	NC_009092.1	2664207	2665766	R	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c	complement(2664207..2665766)	Shewanella loihica PV-4	4922303
YP_001094407.1	CDS	Shew_2282	NC_009092.1	2665963	2667486	D	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative; Fis family transcriptional regulator	2665963..2667486	Shewanella loihica PV-4	4922304
YP_001094408.1	CDS	Shew_2283	NC_009092.1	2667624	2668781	R	PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative; porin	complement(2667624..2668781)	Shewanella loihica PV-4	4922305
YP_001094409.1	CDS	Shew_2284	NC_009092.1	2669070	2669291	D	KEGG: ppr:PBPRA1377 hypothetical protein; hypothetical protein	2669070..2669291	Shewanella loihica PV-4	4922306
YP_001094410.1	CDS	Shew_2285	NC_009092.1	2669323	2670378	R	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: vpa:VPA0879 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase	complement(2669323..2670378)	Shewanella loihica PV-4	4922307
YP_001094411.1	CDS	Shew_2286	NC_009092.1	2670362	2671921	R	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; SSS family solute/sodium (Na+) symporter	complement(2670362..2671921)	Shewanella loihica PV-4	4922308
YP_001094412.1	CDS	Shew_2287	NC_009092.1	2672008	2673189	R	TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: pha:PSHAa1769 galactokinase; galactokinase	complement(2672008..2673189)	Shewanella loihica PV-4	4922309
YP_001094413.1	CDS	Shew_2288	NC_009092.1	2673231	2674322	R	KEGG: pha:PSHAa1770 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase	complement(2673231..2674322)	Shewanella loihica PV-4	4922310
YP_001094414.1	CDS	Shew_2289	NC_009092.1	2674801	2678010	D	PFAM: Glycosyl hydrolase family 98, putative carbohydrate binding module; KEGG: dge:Dgeo_2665 glycosyl hydrolase family 98, putative carbohydrate binding module; glycosyl hydrolase family protein	2674801..2678010	Shewanella loihica PV-4	4922311
YP_001094415.1	CDS	Shew_2290	NC_009092.1	2678109	2678579	R	PFAM: protein of unknown function DUF606; KEGG: cvi:CV3484 hypothetical protein; hypothetical protein	complement(2678109..2678579)	Shewanella loihica PV-4	4922312
YP_001094416.1	CDS	Shew_2291	NC_009092.1	2678579	2679115	R	PFAM: protein of unknown function DUF606; KEGG: son:SO0370 hypothetical protein; hypothetical protein	complement(2678579..2679115)	Shewanella loihica PV-4	4922313
YP_001094417.1	CDS	Shew_2292	NC_009092.1	2679244	2680143	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0340 transcriptional regulator, LysR family; LysR family transcriptional regulator	2679244..2680143	Shewanella loihica PV-4	4922285
YP_001094418.1	CDS	Shew_2293	NC_009092.1	2680226	2681839	R	PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase; tryptophan halogenase	complement(2680226..2681839)	Shewanella loihica PV-4	4922286
YP_001094419.1	CDS	Shew_2294	NC_009092.1	2681952	2684159	R	hypothetical protein	complement(2681952..2684159)	Shewanella loihica PV-4	4922287
YP_001094420.1	CDS	Shew_2295	NC_009092.1	2684469	2685344	R	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: msu:MS1229 AraC protein; AraC family transcriptional regulator	complement(2684469..2685344)	Shewanella loihica PV-4	4922288
YP_001094421.1	CDS	Shew_2296	NC_009092.1	2685678	2688482	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2604 TonB-dependent receptor; TonB-dependent receptor	2685678..2688482	Shewanella loihica PV-4	4922289
YP_001094422.1	CDS	Shew_2297	NC_009092.1	2688763	2690337	D	PFAM: PEGA domain protein; PEGA domain-containing protein	2688763..2690337	Shewanella loihica PV-4	4922290
YP_001094423.1	CDS	Shew_2298	NC_009092.1	2690488	2692431	D	KEGG: sde:Sde_2360 putative alpha-glucosidase; putative alpha-glucosidase	2690488..2692431	Shewanella loihica PV-4	4922291
YP_001094424.1	CDS	Shew_2299	NC_009092.1	2692559	2694571	R	decatenates replicating daughter chromosomes; DNA topoisomerase III	complement(2692559..2694571)	Shewanella loihica PV-4	4922292
YP_001094425.1	CDS	Shew_2300	NC_009092.1	2694723	2694998	D	hypothetical protein	2694723..2694998	Shewanella loihica PV-4	4922293
YP_001094426.1	CDS	Shew_2301	NC_009092.1	2695151	2697268	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2991 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(2695151..2697268)	Shewanella loihica PV-4	4922294
YP_001094427.1	CDS	Shew_2302	NC_009092.1	2697457	2698971	R	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase	complement(2697457..2698971)	Shewanella loihica PV-4	4922295
YP_001094428.1	CDS	Shew_2303	NC_009092.1	2699059	2699547	R	PFAM: Colicin V production protein; KEGG: shm:Shewmr7_1494 colicin V production protein; colicin V production protein	complement(2699059..2699547)	Shewanella loihica PV-4	4922296
YP_001094429.1	CDS	Shew_2304	NC_009092.1	2699766	2700431	R	PFAM: Sporulation domain protein; KEGG: shm:Shewmr7_1493 sporulation domain protein; sporulation domain-containing protein	complement(2699766..2700431)	Shewanella loihica PV-4	4922297
YP_001094430.1	CDS	Shew_2305	NC_009092.1	2700432	2701724	R	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sfr:Sfri_1396 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase	complement(2700432..2701724)	Shewanella loihica PV-4	4922298
YP_001094431.1	CDS	truA	NC_009092.1	2701789	2702574	R	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A	complement(2701789..2702574)	Shewanella loihica PV-4	4922299
YP_001094432.1	CDS	Shew_2307	NC_009092.1	2702822	2705509	R	KEGG: she:Shewmr4_1425 hypothetical protein; hypothetical protein	complement(2702822..2705509)	Shewanella loihica PV-4	4922157
YP_001094433.1	CDS	Shew_2308	NC_009092.1	2705710	2706726	R	KEGG: shm:Shewmr7_1489 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase	complement(2705710..2706726)	Shewanella loihica PV-4	4922158
YP_001094434.1	CDS	Shew_2309	NC_009092.1	2706729	2707859	R	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: she:Shewmr4_1423 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase	complement(2706729..2707859)	Shewanella loihica PV-4	4922159
YP_001094435.1	CDS	ndk	NC_009092.1	2708004	2708435	R	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase	complement(2708004..2708435)	Shewanella loihica PV-4	4922160
YP_001094436.1	CDS	Shew_2311	NC_009092.1	2708637	2708828	R	PFAM: protein of unknown function DUF528; KEGG: shm:Shewmr7_1826 protein of unknown function DUF528; hypothetical protein	complement(2708637..2708828)	Shewanella loihica PV-4	4922161
YP_001094437.1	CDS	Shew_2312	NC_009092.1	2708947	2709282	R	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: shm:Shewmr7_1824 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system	complement(2708947..2709282)	Shewanella loihica PV-4	4922162
YP_001094438.1	CDS	hscA	NC_009092.1	2709291	2711153	R	involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA	complement(2709291..2711153)	Shewanella loihica PV-4	4922163
YP_001094439.1	CDS	hscB	NC_009092.1	2711226	2711747	R	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB	complement(2711226..2711747)	Shewanella loihica PV-4	4922164
YP_001094440.1	CDS	Shew_2315	NC_009092.1	2711763	2712086	R	TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: shm:Shewmr7_1821 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA	complement(2711763..2712086)	Shewanella loihica PV-4	4922165
YP_001094441.1	CDS	Shew_2316	NC_009092.1	2712101	2712484	R	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: shm:Shewmr7_1820 FeS cluster assembly scaffold IscU; scaffold protein	complement(2712101..2712484)	Shewanella loihica PV-4	4922166
YP_001094442.1	CDS	Shew_2317	NC_009092.1	2712521	2713735	R	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase	complement(2712521..2713735)	Shewanella loihica PV-4	4922167
YP_001094443.1	CDS	Shew_2318	NC_009092.1	2713813	2714274	R	TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: shm:Shewmr7_1818 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator	complement(2713813..2714274)	Shewanella loihica PV-4	4922168
YP_001094444.1	CDS	Shew_2319	NC_009092.1	2714471	2715292	R	TIGRFAM: serine O-acetyltransferase; KEGG: she:Shewmr4_1737 serine O-acetyltransferase; serine O-acetyltransferase	complement(2714471..2715292)	Shewanella loihica PV-4	4922169
YP_001094445.1	CDS	Shew_2320	NC_009092.1	2715297	2716055	R	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_1816 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase	complement(2715297..2716055)	Shewanella loihica PV-4	4922170
YP_001094446.1	CDS	Shew_2321	NC_009092.1	2716213	2717016	D	PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_1815 inositol-phosphate phosphatase; inositol monophosphatase	2716213..2717016	Shewanella loihica PV-4	4922101
YP_001094447.1	CDS	Shew_2322	NC_009092.1	2717361	2718533	D	PFAM: NnrS family protein; KEGG: shm:Shewmr7_2495 NnrS family protein; NnrS family protein	2717361..2718533	Shewanella loihica PV-4	4922102
YP_001094448.1	CDS	Shew_2323	NC_009092.1	2718642	2719046	D	PFAM: phosphate-starvation-inducible E; KEGG: shm:Shewmr7_2496 phosphate-starvation-inducible E; phosphate-starvation-inducible E	2718642..2719046	Shewanella loihica PV-4	4922103
YP_001094449.1	CDS	Shew_2324	NC_009092.1	2719363	2719665	D	PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_2497 type IV pilus assembly PilZ; type IV pilus assembly PilZ	2719363..2719665	Shewanella loihica PV-4	4922104
YP_001094450.1	CDS	Shew_2325	NC_009092.1	2719779	2720447	D	KEGG: sdn:Sden_1451 hypothetical protein; hypothetical protein	2719779..2720447	Shewanella loihica PV-4	4922105
YP_001094451.1	CDS	Shew_2326	NC_009092.1	2720434	2720778	D	KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein	2720434..2720778	Shewanella loihica PV-4	4922106
YP_001094452.1	CDS	Shew_2327	NC_009092.1	2720811	2721014	R	KEGG: sfr:Sfri_1783 hypothetical protein; hypothetical protein	complement(2720811..2721014)	Shewanella loihica PV-4	4922107
YP_001094453.1	CDS	Shew_2328	NC_009092.1	2721211	2722908	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: shm:Shewmr7_2501 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS	2721211..2722908	Shewanella loihica PV-4	4922108
YP_001094454.1	CDS	Shew_2329	NC_009092.1	2722905	2723615	D	unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT	2722905..2723615	Shewanella loihica PV-4	4922109
YP_001094455.1	CDS	Shew_2330	NC_009092.1	2723735	2725171	D	PFAM: carbon starvation protein CstA; KEGG: shm:Shewmr7_2503 carbon starvation protein CstA; carbon starvation protein CstA	2723735..2725171	Shewanella loihica PV-4	4922110
YP_001094456.1	CDS	Shew_2331	NC_009092.1	2725285	2725824	R	PFAM: YaeQ family protein; KEGG: shm:Shewmr7_1454 YaeQ family protein; YaeQ family protein	complement(2725285..2725824)	Shewanella loihica PV-4	4922111
YP_001094457.1	CDS	Shew_2332	NC_009092.1	2725893	2726804	R	TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase	complement(2725893..2726804)	Shewanella loihica PV-4	4922112
YP_001094458.1	CDS	Shew_2333	NC_009092.1	2726875	2727192	R	KEGG: shm:Shewmr7_1451 hypothetical protein; hypothetical protein	complement(2726875..2727192)	Shewanella loihica PV-4	4922113
YP_001094459.1	CDS	secF	NC_009092.1	2727365	2728312	R	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF	complement(2727365..2728312)	Shewanella loihica PV-4	4922114
YP_001094460.1	CDS	secD	NC_009092.1	2728326	2730176	R	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD	complement(2728326..2730176)	Shewanella loihica PV-4	4922115
YP_001094461.1	CDS	Shew_2336	NC_009092.1	2730216	2730491	R	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: son:SO3112 preprotein translocase, YajC subunit; preprotein translocase subunit YajC	complement(2730216..2730491)	Shewanella loihica PV-4	4922063
YP_001094462.1	CDS	tgt	NC_009092.1	2730576	2731700	R	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase	complement(2730576..2731700)	Shewanella loihica PV-4	4922064
YP_001094463.1	CDS	queA	NC_009092.1	2731869	2732906	R	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase	complement(2731869..2732906)	Shewanella loihica PV-4	4922065
YP_001094464.1	CDS	Shew_2339	NC_009092.1	2733316	2733909	D	PFAM: protein of unknown function DUF479; KEGG: sfr:Sfri_2704 protein of unknown function DUF479; hypothetical protein	2733316..2733909	Shewanella loihica PV-4	4922066
YP_001094465.1	CDS	Shew_2340	NC_009092.1	2733979	2734476	D	PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_1443 redoxin domain protein; redoxin domain-containing protein	2733979..2734476	Shewanella loihica PV-4	4922067
YP_001094466.1	CDS	Shew_2341	NC_009092.1	2734555	2735907	R	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_1366 sigma-54 factor, interaction region; two component, sigma54 specific, Fis family transcriptional regulator	complement(2734555..2735907)	Shewanella loihica PV-4	4922068
YP_001094467.1	CDS	Shew_2342	NC_009092.1	2735907	2737541	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sdn:Sden_1365 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase	complement(2735907..2737541)	Shewanella loihica PV-4	4922069
YP_001094468.1	CDS	Shew_2343	NC_009092.1	2737879	2738655	D	KEGG: sdn:Sden_1364 hypothetical protein; hypothetical protein	2737879..2738655	Shewanella loihica PV-4	4922070
YP_001094469.1	CDS	Shew_2344	NC_009092.1	2738752	2739087	D	KEGG: sfr:Sfri_2525 hypothetical protein; hypothetical protein	2738752..2739087	Shewanella loihica PV-4	4922071
YP_001094470.1	CDS	Shew_2345	NC_009092.1	2739163	2740677	R	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdn:Sden_1897 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	complement(2739163..2740677)	Shewanella loihica PV-4	4922072
YP_001094471.1	CDS	Shew_2346	NC_009092.1	2740733	2741398	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: cps:CPS_3310 putative phosphonate ABC transporter, ATP-binding protein; ABC transporter-like protein	complement(2740733..2741398)	Shewanella loihica PV-4	4922073
YP_001094472.1	CDS	Shew_2347	NC_009092.1	2741403	2742257	R	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sfr:Sfri_2485 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein	complement(2741403..2742257)	Shewanella loihica PV-4	4922074
YP_001094473.1	CDS	Shew_2348	NC_009092.1	2742497	2743171	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_1655 two component transcriptional regulator, winged helix family; two component transcriptional regulator	2742497..2743171	Shewanella loihica PV-4	4922075
YP_001094474.1	CDS	Shew_2349	NC_009092.1	2743162	2744511	D	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: she:Shewmr4_1579 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	2743162..2744511	Shewanella loihica PV-4	4922076
YP_001094475.1	CDS	Shew_2350	NC_009092.1	2744508	2745203	R	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; 2OG-Fe(II) oxygenase	complement(2744508..2745203)	Shewanella loihica PV-4	4921722
YP_001094476.1	CDS	Shew_2351	NC_009092.1	2745324	2746589	D	KEGG: shm:Shewmr7_1652 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase	2745324..2746589	Shewanella loihica PV-4	4921723
YP_001094477.1	CDS	Shew_2352	NC_009092.1	2746679	2746987	D	hypothetical protein	2746679..2746987	Shewanella loihica PV-4	4921724
YP_001094478.1	CDS	Shew_2353	NC_009092.1	2747062	2748009	R	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA	complement(2747062..2748009)	Shewanella loihica PV-4	4921725
YP_001094479.1	CDS	Shew_2354	NC_009092.1	2748171	2748539	R	KEGG: sfr:Sfri_3226 hypothetical protein; hypothetical protein	complement(2748171..2748539)	Shewanella loihica PV-4	4921726
YP_001094480.1	CDS	Shew_2355	NC_009092.1	2748704	2749474	D	KEGG: sfr:Sfri_0786 hypothetical protein; hypothetical protein	2748704..2749474	Shewanella loihica PV-4	4921727
YP_001094481.1	CDS	Shew_2356	NC_009092.1	2749563	2750600	R	PFAM: Patatin; KEGG: she:Shewmr4_2385 patatin; patatin	complement(2749563..2750600)	Shewanella loihica PV-4	4921728
YP_001094482.1	CDS	Shew_2357	NC_009092.1	2757544	2758098	R	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase	complement(2757544..2758098)	Shewanella loihica PV-4	4920911
YP_001094483.1	CDS	Shew_2358	NC_009092.1	2758272	2759591	D	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: mca:MCA2770 xaa-pro aminopeptidase; peptidase M24	2758272..2759591	Shewanella loihica PV-4	4921730
YP_001094484.1	CDS	Shew_2359	NC_009092.1	2759661	2760251	R	PFAM: Uracil-DNA glycosylase superfamily; KEGG: dar:Daro_1297 hypothetical protein; uracil-DNA glycosylase superfamily protein	complement(2759661..2760251)	Shewanella loihica PV-4	4921731
YP_001094485.1	CDS	Shew_2360	NC_009092.1	2760413	2761753	R	PFAM: FAD dependent oxidoreductase; KEGG: hch:HCH_03166 glycine/D-amino acid oxidases (deaminating); D-amino-acid dehydrogenase	complement(2760413..2761753)	Shewanella loihica PV-4	4921732
YP_001094486.1	CDS	Shew_2361	NC_009092.1	2761750	2762790	R	PFAM: proline racemase; KEGG: cps:CPS_1453 putative proline racemase; proline racemase	complement(2761750..2762790)	Shewanella loihica PV-4	4921733
YP_001094487.1	CDS	Shew_2362	NC_009092.1	2762994	2763908	D	KEGG: cps:CPS_1449 dihydrodipicolinate synthetase family protein; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase	2762994..2763908	Shewanella loihica PV-4	4921734
YP_001094488.1	CDS	Shew_2363	NC_009092.1	2763929	2764930	D	PFAM: proline racemase; KEGG: hch:HCH_03167 proline racemase; hydroxyproline-2-epimerase	2763929..2764930	Shewanella loihica PV-4	4921735
YP_001094489.1	CDS	Shew_2364	NC_009092.1	2764957	2766522	D	PFAM: aldehyde dehydrogenase; KEGG: csa:Csal_1140 aldehyde dehydrogenase; aldehyde dehydrogenase	2764957..2766522	Shewanella loihica PV-4	4921891
YP_001094490.1	CDS	Shew_2365	NC_009092.1	2766629	2767300	D	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: she:Shewmr4_1521 transcriptional regulator, GntR family; GntR family transcriptional regulator	2766629..2767300	Shewanella loihica PV-4	4921892
YP_001094491.1	CDS	Shew_2366	NC_009092.1	2767400	2768467	D	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase	2767400..2768467	Shewanella loihica PV-4	4921893
YP_001094492.1	CDS	Shew_2367	NC_009092.1	2768570	2769160	R	KEGG: shm:Shewmr7_1586 hypothetical protein; hypothetical protein	complement(2768570..2769160)	Shewanella loihica PV-4	4921894
YP_001094493.1	CDS	Shew_2368	NC_009092.1	2769299	2769979	R	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease	complement(2769299..2769979)	Shewanella loihica PV-4	4921895
YP_001094494.1	CDS	Shew_2369	NC_009092.1	2769980	2771827	R	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein; cyclic nucleotide-binding protein	complement(2769980..2771827)	Shewanella loihica PV-4	4921896
YP_001094495.1	CDS	Shew_2370	NC_009092.1	2771948	2772607	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdn:Sden_1373 methyltransferase type 12; type 11 methyltransferase	complement(2771948..2772607)	Shewanella loihica PV-4	4921897
YP_001094496.1	CDS	Shew_2371	NC_009092.1	2772719	2774437	R	PFAM: Na+/solute symporter; KEGG: sfr:Sfri_1547 Na+/solute symporter; Na+/solute symporter	complement(2772719..2774437)	Shewanella loihica PV-4	4921898
YP_001094497.1	CDS	Shew_2372	NC_009092.1	2774449	2774715	R	KEGG: shm:Shewmr7_1580 hypothetical protein; hypothetical protein	complement(2774449..2774715)	Shewanella loihica PV-4	4921899
YP_001094498.1	CDS	Shew_2373	NC_009092.1	2775015	2775647	R	PFAM: DSBA oxidoreductase; KEGG: she:Shewmr4_1512 DsbA oxidoreductase; DSBA oxidoreductase	complement(2775015..2775647)	Shewanella loihica PV-4	4921900
YP_001094499.1	CDS	Shew_2374	NC_009092.1	2775885	2776784	R	KEGG: sfr:Sfri_2458 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase	complement(2775885..2776784)	Shewanella loihica PV-4	4921901
YP_001094500.1	CDS	Shew_2375	NC_009092.1	2776848	2778071	R	KEGG: she:Shewmr4_1510 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase	complement(2776848..2778071)	Shewanella loihica PV-4	4921902
YP_001094501.1	CDS	Shew_2376	NC_009092.1	2778555	2779025	R	KEGG: son:SO2863 hypothetical protein; hypothetical protein	complement(2778555..2779025)	Shewanella loihica PV-4	4921903
YP_001094502.1	CDS	Shew_2377	NC_009092.1	2779187	2781196	R	KEGG: shm:Shewmr7_1575 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; NAD-dependent DNA ligase	complement(2779187..2781196)	Shewanella loihica PV-4	4921904
YP_001094503.1	CDS	Shew_2378	NC_009092.1	2781264	2782271	R	TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA	complement(2781264..2782271)	Shewanella loihica PV-4	4921905
YP_001094504.1	CDS	Shew_2379	NC_009092.1	2782295	2785720	R	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC	complement(2782295..2785720)	Shewanella loihica PV-4	4921443
YP_001094505.1	CDS	Shew_2380	NC_009092.1	2785909	2786682	D	putative role in sulfur assimilation; putative sulfate transport protein CysZ	2785909..2786682	Shewanella loihica PV-4	4921444
YP_001094506.1	CDS	Shew_2381	NC_009092.1	2786733	2787977	R	PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein; RDD domain-containing protein	complement(2786733..2787977)	Shewanella loihica PV-4	4921445
YP_001094507.1	CDS	Shew_2382	NC_009092.1	2788241	2789209	D	TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: she:Shewmr4_1500 cysteine synthase A; cysteine synthase A	2788241..2789209	Shewanella loihica PV-4	4921446
YP_001094508.1	CDS	Shew_2383	NC_009092.1	2789272	2789928	R	PFAM: regulatory protein, TetR; KEGG: psp:PSPPH_3872 transcriptional regulator, TetR family; TetR family transcriptional regulator	complement(2789272..2789928)	Shewanella loihica PV-4	4921447
YP_001094509.1	CDS	Shew_2384	NC_009092.1	2790184	2791251	D	PFAM: O-methyltransferase, family 2; KEGG: sfr:Sfri_2128 O-methyltransferase, putative; O-methyltransferase family protein	2790184..2791251	Shewanella loihica PV-4	4921448
YP_001094510.1	CDS	Shew_2385	NC_009092.1	2792231	2794918	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2119 TonB-dependent receptor; TonB-dependent receptor, plug	2792231..2794918	Shewanella loihica PV-4	4921449
YP_001094511.1	CDS	Shew_2386	NC_009092.1	2794991	2796520	R	PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shm:Shewmr7_1563 C4-dicarboxylate anaerobic carrier; hypothetical protein	complement(2794991..2796520)	Shewanella loihica PV-4	4921450
YP_001094512.1	CDS	Shew_2387	NC_009092.1	2796863	2797777	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2469 transcriptional regulator, LysR family protein; LysR family transcriptional regulator	2796863..2797777	Shewanella loihica PV-4	4921451
YP_001094513.1	CDS	Shew_2388	NC_009092.1	2797912	2799438	R	PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: sfr:Sfri_2470 formate/nitrite transporter; formate/nitrite transporter	complement(2797912..2799438)	Shewanella loihica PV-4	4921452
YP_001094514.1	CDS	Shew_2389	NC_009092.1	2800399	2801931	D	KEGG: sfr:Sfri_2472 hypothetical protein; hypothetical protein	2800399..2801931	Shewanella loihica PV-4	4921453
YP_001094515.1	CDS	Shew_2390	NC_009092.1	2802496	2804778	D	KEGG: shm:Shewmr7_1561 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase	2802496..2804778	Shewanella loihica PV-4	4921454
YP_001094516.1	CDS	pflA	NC_009092.1	2804882	2805622	D	activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1	2804882..2805622	Shewanella loihica PV-4	4921455
YP_001094517.1	CDS	Shew_2392	NC_009092.1	2805629	2806072	R	PFAM: protein of unknown function DUF412; KEGG: shm:Shewmr7_1559 protein of unknown function DUF412; hypothetical protein	complement(2805629..2806072)	Shewanella loihica PV-4	4921456
YP_001094518.1	CDS	Shew_2393	NC_009092.1	2806268	2807464	D	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase	2806268..2807464	Shewanella loihica PV-4	4921783
YP_001094519.1	CDS	Shew_2394	NC_009092.1	2807561	2809699	D	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase	2807561..2809699	Shewanella loihica PV-4	4921784
YP_001094520.1	CDS	Shew_2395	NC_009092.1	2810027	2810458	D	KEGG: son:SO2917 hypothetical protein; hypothetical protein	2810027..2810458	Shewanella loihica PV-4	4921785
YP_001094521.1	CDS	Shew_2396	NC_009092.1	2811189	2811413	D	KEGG: shm:Shewmr7_1552 hypothetical protein; hypothetical protein	2811189..2811413	Shewanella loihica PV-4	4921786
YP_001094522.1	CDS	Shew_2397	NC_009092.1	2811517	2812434	R	KEGG: sfr:Sfri_2556 hypothetical protein; hypothetical protein	complement(2811517..2812434)	Shewanella loihica PV-4	4921787
YP_001094523.1	CDS	Shew_2398	NC_009092.1	2812498	2813667	R	PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_1550 protein of unknown function UPF0118; hypothetical protein	complement(2812498..2813667)	Shewanella loihica PV-4	4921788
YP_001094524.1	CDS	folX	NC_009092.1	2813743	2814108	D	catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase	2813743..2814108	Shewanella loihica PV-4	4921789
YP_001094525.1	CDS	Shew_2400	NC_009092.1	2814205	2815134	D	PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: she:Shewmr4_1483 hypothetical protein; hypothetical protein	2814205..2815134	Shewanella loihica PV-4	4921790
YP_001094526.1	CDS	Shew_2401	NC_009092.1	2815269	2817719	R	PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_1545 protein of unknown function DUF214; hypothetical protein	complement(2815269..2817719)	Shewanella loihica PV-4	4921791
YP_001094527.1	CDS	Shew_2402	NC_009092.1	2817719	2818459	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sdn:Sden_2367 ABC transporter-related protein; ABC transporter-like protein	complement(2817719..2818459)	Shewanella loihica PV-4	4921792
YP_001094528.1	CDS	Shew_2403	NC_009092.1	2818494	2819087	D	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: she:Shewmr4_1478 arylesterase; arylesterase	2818494..2819087	Shewanella loihica PV-4	4921793
YP_001094529.1	CDS	Shew_2404	NC_009092.1	2819657	2822308	D	KEGG: shm:Shewmr7_1539 hypothetical protein; hypothetical protein	2819657..2822308	Shewanella loihica PV-4	4921794
YP_001094530.1	CDS	Shew_2405	NC_009092.1	2822361	2823596	D	KEGG: son:SO2931 hypothetical protein; hypothetical protein	2822361..2823596	Shewanella loihica PV-4	4921795
YP_001094531.1	CDS	Shew_2406	NC_009092.1	2823593	2824606	R	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: she:Shewmr4_1471 transcriptional regulator, AraC family; AraC family transcriptional regulator	complement(2823593..2824606)	Shewanella loihica PV-4	4921796
YP_001094532.1	CDS	Shew_2407	NC_009092.1	2824745	2825776	R	SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease	complement(2824745..2825776)	Shewanella loihica PV-4	4921797
YP_001094533.1	CDS	Shew_2408	NC_009092.1	2825905	2828391	R	KEGG: she:Shewmr4_1469 hypothetical protein; hypothetical protein	complement(2825905..2828391)	Shewanella loihica PV-4	4921738
YP_001094534.1	CDS	Shew_2409	NC_009092.1	2828652	2829389	D	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1534 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase	2828652..2829389	Shewanella loihica PV-4	4921739
YP_001094535.1	CDS	Shew_2410	NC_009092.1	2829576	2830787	R	PFAM: beta-ketoacyl synthase; KEGG: sfr:Sfri_1391 beta-ketoacyl synthase; beta-ketoacyl synthase	complement(2829576..2830787)	Shewanella loihica PV-4	4921740
YP_001094536.1	CDS	Shew_2411	NC_009092.1	2830891	2832951	D	PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_1390 FAD dependent oxidoreductase; FAD dependent oxidoreductase	2830891..2832951	Shewanella loihica PV-4	4921741
YP_001094537.1	CDS	Shew_2412	NC_009092.1	2833034	2833558	R	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sdn:Sden_1541 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU	complement(2833034..2833558)	Shewanella loihica PV-4	4921742
YP_001094538.1	CDS	Shew_2413	NC_009092.1	2833561	2833842	R	KEGG: sdn:Sden_1540 hypothetical protein; hypothetical protein	complement(2833561..2833842)	Shewanella loihica PV-4	4921743
YP_001094539.1	CDS	Shew_2414	NC_009092.1	2833865	2835031	R	PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase	complement(2833865..2835031)	Shewanella loihica PV-4	4921744
YP_001094540.1	CDS	Shew_2415	NC_009092.1	2835052	2836260	R	PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative; major facilitator superfamily transporter	complement(2835052..2836260)	Shewanella loihica PV-4	4921745
YP_001094541.1	CDS	Shew_2416	NC_009092.1	2836447	2837541	R	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase	complement(2836447..2837541)	Shewanella loihica PV-4	4921746
YP_001094542.1	CDS	Shew_2417	NC_009092.1	2837673	2838617	R	involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase	complement(2837673..2838617)	Shewanella loihica PV-4	4921747
YP_001094543.1	CDS	Shew_2418	NC_009092.1	2838697	2839224	D	PFAM: Smr protein/MutS2; KEGG: shm:Shewmr7_1479 Smr protein/MutS2; hypothetical protein	2838697..2839224	Shewanella loihica PV-4	4921748
YP_001094544.1	CDS	Shew_2419	NC_009092.1	2839398	2839868	R	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA	complement(2839398..2839868)	Shewanella loihica PV-4	4921749
YP_001094545.1	CDS	Shew_2420	NC_009092.1	2840092	2842869	D	PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family; peptidase M16 domain-containing protein	2840092..2842869	Shewanella loihica PV-4	4921750
YP_001094546.1	CDS	Shew_2421	NC_009092.1	2843433	2847746	D	KEGG: shm:Shewmr7_1476 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	2843433..2847746	Shewanella loihica PV-4	4921751
YP_001094547.1	CDS	Shew_2422	NC_009092.1	2847897	2848532	D	KEGG: she:Shewmr4_1410 hypothetical protein; hypothetical protein	2847897..2848532	Shewanella loihica PV-4	4921643
YP_001094548.1	CDS	Shew_2423	NC_009092.1	2848551	2848670	D	KEGG: sfr:Sfri_4067 hypothetical protein; hypothetical protein	2848551..2848670	Shewanella loihica PV-4	4921644
YP_001094549.1	CDS	Shew_2424	NC_009092.1	2848964	2849170	R	KEGG: sdn:Sden_1531 hypothetical protein; hypothetical protein	complement(2848964..2849170)	Shewanella loihica PV-4	4921645
YP_001094550.1	CDS	fadJ	NC_009092.1	2849329	2851449	R	multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha	complement(2849329..2851449)	Shewanella loihica PV-4	4921646
YP_001094551.1	CDS	fadI	NC_009092.1	2851454	2852764	R	FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase	complement(2851454..2852764)	Shewanella loihica PV-4	4921647
YP_001094552.1	CDS	Shew_2427	NC_009092.1	2853173	2854129	D	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1471 ATPase associated with various cellular activities, AAA_3; ATPase	2853173..2854129	Shewanella loihica PV-4	4921648
YP_001094553.1	CDS	Shew_2428	NC_009092.1	2854129	2855058	D	PFAM: protein of unknown function DUF58; KEGG: she:Shewmr4_1405 protein of unknown function DUF58; hypothetical protein	2854129..2855058	Shewanella loihica PV-4	4921649
YP_001094554.1	CDS	Shew_2429	NC_009092.1	2855059	2855553	D	KEGG: son:SO3092 hypothetical protein; hypothetical protein	2855059..2855553	Shewanella loihica PV-4	4921650
YP_001094555.1	CDS	Shew_2430	NC_009092.1	2855541	2856560	D	PFAM: von Willebrand factor, type A; KEGG: shm:Shewmr7_1468 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein	2855541..2856560	Shewanella loihica PV-4	4921651
YP_001094556.1	CDS	Shew_2431	NC_009092.1	2856557	2858638	D	PFAM: TPR repeat-containing protein; von Willebrand factor, type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_1467 tetratricopeptide TPR_2 repeat protein; hypothetical protein	2856557..2858638	Shewanella loihica PV-4	4921652
YP_001094557.1	CDS	Shew_2432	NC_009092.1	2858632	2860272	D	KEGG: shm:Shewmr7_1466 hypothetical protein; hypothetical protein	2858632..2860272	Shewanella loihica PV-4	4921653
YP_001094558.1	CDS	Shew_2433	NC_009092.1	2860357	2860920	D	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor	2860357..2860920	Shewanella loihica PV-4	4921654
YP_001094559.1	CDS	Shew_2434	NC_009092.1	2860913	2861617	D	KEGG: shm:Shewmr7_1464 hypothetical protein; hypothetical protein	2860913..2861617	Shewanella loihica PV-4	4921655
YP_001094560.1	CDS	Shew_2435	NC_009092.1	2862004	2863455	D	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: she:Shewmr4_1398 sodium/proline symporter; sodium/proline symporter	2862004..2863455	Shewanella loihica PV-4	4921656
YP_001094561.1	CDS	Shew_2436	NC_009092.1	2863837	2865153	D	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: shm:Shewmr7_1462 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein	2863837..2865153	Shewanella loihica PV-4	4921657
YP_001094562.1	CDS	Shew_2437	NC_009092.1	2865259	2865645	D	KEGG: shm:Shewmr7_1461 hypothetical protein; hypothetical protein	2865259..2865645	Shewanella loihica PV-4	4921593
YP_001094563.1	CDS	Shew_2438	NC_009092.1	2865720	2866430	D	PFAM: protein of unknown function DUF541; KEGG: son:SO3101 hypothetical protein; hypothetical protein	2865720..2866430	Shewanella loihica PV-4	4921594
YP_001094564.1	CDS	Shew_2439	NC_009092.1	2866545	2867561	D	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1394 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	2866545..2867561	Shewanella loihica PV-4	4921595
YP_001094565.1	CDS	Shew_2440	NC_009092.1	2867592	2870846	D	PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1458 acriflavin resistance protein; acriflavin resistance protein	2867592..2870846	Shewanella loihica PV-4	4921596
YP_001094566.1	CDS	Shew_2441	NC_009092.1	2870858	2871070	D	KEGG: shm:Shewmr7_1457 hypothetical protein; hypothetical protein	2870858..2871070	Shewanella loihica PV-4	4921597
YP_001094567.1	CDS	Shew_2442	NC_009092.1	2871094	2871477	D	PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein	2871094..2871477	Shewanella loihica PV-4	4921598
YP_001094568.1	CDS	Shew_2443	NC_009092.1	2872114	2874537	D	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: sfr:Sfri_2692 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin	2872114..2874537	Shewanella loihica PV-4	4921599
YP_001094569.1	CDS	Shew_2444	NC_009092.1	2874607	2874987	D	KEGG: shm:Shewmr7_2504 hypothetical protein; hypothetical protein	2874607..2874987	Shewanella loihica PV-4	4921600
YP_001094570.1	CDS	Shew_2445	NC_009092.1	2875132	2875608	D	KEGG: sdn:Sden_0862 hypothetical protein; hypothetical protein	2875132..2875608	Shewanella loihica PV-4	4921601
YP_001094571.1	CDS	ribA	NC_009092.1	2875735	2876352	R	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II	complement(2875735..2876352)	Shewanella loihica PV-4	4921602
YP_001094572.1	CDS	Shew_2447	NC_009092.1	2876587	2876943	R	KEGG: shm:Shewmr7_2509 hypothetical protein; hypothetical protein	complement(2876587..2876943)	Shewanella loihica PV-4	4921603
YP_001094573.1	CDS	nrdG	NC_009092.1	2877102	2877575	R	activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein	complement(2877102..2877575)	Shewanella loihica PV-4	4921604
YP_001094574.1	CDS	Shew_2449	NC_009092.1	2877697	2879814	R	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase	complement(2877697..2879814)	Shewanella loihica PV-4	4921605
YP_001094575.1	CDS	Shew_2450	NC_009092.1	2880065	2880802	R	KEGG: shm:Shewmr7_2512 hypothetical protein; hypothetical protein	complement(2880065..2880802)	Shewanella loihica PV-4	4921606
YP_001094576.1	CDS	Shew_2451	NC_009092.1	2881033	2882064	R	PFAM: Patatin; KEGG: sfr:Sfri_2444 patatin; patatin	complement(2881033..2882064)	Shewanella loihica PV-4	4921496
YP_001094577.1	CDS	Shew_2452	NC_009092.1	2882168	2883550	D	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase	2882168..2883550	Shewanella loihica PV-4	4921497
YP_001094578.1	CDS	Shew_2453	NC_009092.1	2883867	2884307	D	KEGG: sdn:Sden_1416 hypothetical protein; hypothetical protein	2883867..2884307	Shewanella loihica PV-4	4921498
YP_001094579.1	CDS	Shew_2454	NC_009092.1	2884383	2884889	D	PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein	2884383..2884889	Shewanella loihica PV-4	4921499
YP_001094580.1	CDS	Shew_2455	NC_009092.1	2884964	2886220	R	PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A, N-terminal domain protein; KEGG: shm:Shewmr7_2518 peptidase M23B; peptidase M23B	complement(2884964..2886220)	Shewanella loihica PV-4	4921500
YP_001094581.1	CDS	Shew_2456	NC_009092.1	2886466	2889522	R	PFAM: SMC domain protein; KEGG: son:SO2843 exonuclease SbcC, putative; SMC domain-containing protein	complement(2886466..2889522)	Shewanella loihica PV-4	4921501
YP_001094582.1	CDS	Shew_2457	NC_009092.1	2889519	2890661	R	TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shm:Shewmr7_2520 nuclease SbcCD, D subunit; nuclease SbcCD subunit D	complement(2889519..2890661)	Shewanella loihica PV-4	4921502
YP_001094583.1	CDS	Shew_2458	NC_009092.1	2890901	2891761	R	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: vpa:VPA1298 putative glutathione S-transferase; glutathione S-transferase domain-containing protein	complement(2890901..2891761)	Shewanella loihica PV-4	4921503
YP_001094584.1	CDS	Shew_2459	NC_009092.1	2892005	2892352	R	KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein	complement(2892005..2892352)	Shewanella loihica PV-4	4921504
YP_001094585.1	CDS	Shew_2460	NC_009092.1	2892459	2893502	R	KEGG: chu:CHU_1911 conserved hypothetical protein with multiple MORN variant repeat domains; hypothetical protein	complement(2892459..2893502)	Shewanella loihica PV-4	4921505
YP_001094586.1	CDS	Shew_2461	NC_009092.1	2893613	2895931	R	PFAM: MORN variant repeat protein; KEGG: shm:Shewmr7_3193 hypothetical protein; MORN repeat-containing protein	complement(2893613..2895931)	Shewanella loihica PV-4	4921506
YP_001094587.1	CDS	Shew_2462	NC_009092.1	2896062	2897870	R	KEGG: she:Shewmr4_0831 MORN variant repeat protein; MORN repeat-containing protein	complement(2896062..2897870)	Shewanella loihica PV-4	4921507
YP_001094588.1	CDS	Shew_2463	NC_009092.1	2897880	2900201	R	KEGG: she:Shewmr4_0832 hypothetical protein; hypothetical protein	complement(2897880..2900201)	Shewanella loihica PV-4	4921508
YP_001094589.1	CDS	Shew_2464	NC_009092.1	2900369	2901133	R	PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein	complement(2900369..2901133)	Shewanella loihica PV-4	4921509
YP_001094590.1	CDS	Shew_2465	NC_009092.1	2901238	2902167	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_2452 transcriptional regulator, LysR family; LysR family transcriptional regulator	2901238..2902167	Shewanella loihica PV-4	4921133
YP_001094591.1	CDS	Shew_2466	NC_009092.1	2902171	2904141	R	KEGG: son:SO0497 hypothetical protein; hypothetical protein	complement(2902171..2904141)	Shewanella loihica PV-4	4921134
YP_001094592.1	CDS	Shew_2467	NC_009092.1	2904267	2904653	R	PFAM: protein of unknown function DUF1260; KEGG: shm:Shewmr7_2523 protein of unknown function DUF1260; hypothetical protein	complement(2904267..2904653)	Shewanella loihica PV-4	4921135
YP_001094593.1	CDS	Shew_2468	NC_009092.1	2904686	2904916	R	KEGG: shm:Shewmr7_2524 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein	complement(2904686..2904916)	Shewanella loihica PV-4	4921136
YP_001094594.1	CDS	Shew_2469	NC_009092.1	2904965	2905513	R	PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2455 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	complement(2904965..2905513)	Shewanella loihica PV-4	4921137
YP_001094595.1	CDS	Shew_2470	NC_009092.1	2905518	2905796	R	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shm:Shewmr7_2526 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	complement(2905518..2905796)	Shewanella loihica PV-4	4921138
YP_001094596.1	CDS	Shew_2471	NC_009092.1	2905888	2907723	R	PFAM: protein of unknown function DUF885; KEGG: sfr:Sfri_2620 protein of unknown function DUF885; hypothetical protein	complement(2905888..2907723)	Shewanella loihica PV-4	4921139
YP_001094597.1	CDS	Shew_2472	NC_009092.1	2907803	2908312	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2528 diguanylate cyclase; diguanylate cyclase	2907803..2908312	Shewanella loihica PV-4	4921140
YP_001094598.1	CDS	Shew_2473	NC_009092.1	2908372	2909619	R	KEGG: sfr:Sfri_2621 tetratricopeptide domain protein; hypothetical protein	complement(2908372..2909619)	Shewanella loihica PV-4	4921141
YP_001094599.1	CDS	Shew_2474	NC_009092.1	2909622	2910239	R	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sdn:Sden_2421 TonB-like protein; TonB family protein	complement(2909622..2910239)	Shewanella loihica PV-4	4921142
YP_001094600.1	CDS	Shew_2475	NC_009092.1	2910241	2910645	R	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR	complement(2910241..2910645)	Shewanella loihica PV-4	4921143
YP_001094601.1	CDS	Shew_2476	NC_009092.1	2910659	2911186	R	PFAM: MotA/TolQ/ExbB proton channel; KEGG: she:Shewmr4_2462 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel	complement(2910659..2911186)	Shewanella loihica PV-4	4921144
YP_001094602.1	CDS	Shew_2477	NC_009092.1	2911186	2912541	R	PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2533 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel	complement(2911186..2912541)	Shewanella loihica PV-4	4921145
YP_001094603.1	CDS	Shew_2478	NC_009092.1	2912541	2913323	R	KEGG: sdn:Sden_2425 hypothetical protein; hypothetical protein	complement(2912541..2913323)	Shewanella loihica PV-4	4921146
YP_001094604.1	CDS	Shew_2479	NC_009092.1	2913826	2914833	R	PFAM: Methyltransferase type 11; KEGG: sfr:Sfri_2627 methyltransferase type 11; type 11 methyltransferase	complement(2913826..2914833)	Shewanella loihica PV-4	4921147
YP_001094605.1	CDS	Shew_2480	NC_009092.1	2914896	2917526	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2628 TonB-dependent receptor; TonB-dependent receptor	complement(2914896..2917526)	Shewanella loihica PV-4	4921375
YP_001094606.1	CDS	Shew_2481	NC_009092.1	2918374	2919585	R	PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2468 porin, gram-negative type; porin	complement(2918374..2919585)	Shewanella loihica PV-4	4921376
YP_001094607.1	CDS	Shew_2482	NC_009092.1	2919819	2922206	R	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II	complement(2919819..2922206)	Shewanella loihica PV-4	4921377
YP_001094608.1	CDS	dinG	NC_009092.1	2922369	2924441	D	helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG	2922369..2924441	Shewanella loihica PV-4	4921378
YP_001094609.1	CDS	Shew_2484	NC_009092.1	2924480	2925253	D	PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2539 protein of unknown function DUF81; hypothetical protein	2924480..2925253	Shewanella loihica PV-4	4921379
YP_001094610.1	CDS	Shew_2485	NC_009092.1	2925250	2925912	D	KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N''	2925250..2925912	Shewanella loihica PV-4	4921380
YP_001094611.1	CDS	Shew_2486	NC_009092.1	2925922	2926611	D	KEGG: she:Shewmr4_2473 hypothetical protein; hypothetical protein	2925922..2926611	Shewanella loihica PV-4	4921381
YP_001094612.1	CDS	Shew_2487	NC_009092.1	2926619	2927521	D	PFAM: histone deacetylase superfamily; KEGG: she:Shewmr4_2474 histone deacetylase superfamily; histone deacetylase superfamily protein	2926619..2927521	Shewanella loihica PV-4	4921382
YP_001094613.1	CDS	Shew_2488	NC_009092.1	2927573	2927851	D	KEGG: son:SO1814 hypothetical protein; hypothetical protein	2927573..2927851	Shewanella loihica PV-4	4921383
YP_001094614.1	CDS	Shew_2489	NC_009092.1	2928413	2928712	R	KEGG: she:Shewmr4_2476 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA	complement(2928413..2928712)	Shewanella loihica PV-4	4920912
YP_001094615.1	CDS	Shew_2490	NC_009092.1	2929103	2930494	D	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shm:Shewmr7_3574 anion transporter; anion transporter	2929103..2930494	Shewanella loihica PV-4	4921385
YP_001094616.1	CDS	Shew_2491	NC_009092.1	2930577	2931752	R	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1812 methionine gamma-lyase; methionine gamma-lyase	complement(2930577..2931752)	Shewanella loihica PV-4	4921386
YP_001094617.1	CDS	Shew_2492	NC_009092.1	2931878	2932972	R	PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein; hypothetical protein	complement(2931878..2932972)	Shewanella loihica PV-4	4921387
YP_001094618.1	CDS	Shew_2493	NC_009092.1	2933058	2934503	R	PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: sfr:Sfri_2575 protein of unknown function DUF463, YcjX family protein; hypothetical protein	complement(2933058..2934503)	Shewanella loihica PV-4	4921388
YP_001094619.1	CDS	Shew_2494	NC_009092.1	2934593	2934988	R	PFAM: PspC domain protein; KEGG: sfr:Sfri_2576 phage shock protein C, PspC; phage shock protein C, PspC	complement(2934593..2934988)	Shewanella loihica PV-4	4921340
YP_001094620.1	CDS	pspB	NC_009092.1	2934975	2935214	R	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B	complement(2934975..2935214)	Shewanella loihica PV-4	4921341
YP_001094621.1	CDS	Shew_2496	NC_009092.1	2935235	2935918	R	PFAM: PspA/IM30 family protein; KEGG: shm:Shewmr7_2550 phage shock protein A, PspA; phage shock protein A, PspA	complement(2935235..2935918)	Shewanella loihica PV-4	4921342
YP_001094622.1	CDS	Shew_2497	NC_009092.1	2936096	2937166	D	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2551 transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator	2936096..2937166	Shewanella loihica PV-4	4921343
YP_001094623.1	CDS	Shew_2498	NC_009092.1	2937254	2938897	D	PFAM: extracellular solute-binding protein, family 5; KEGG: she:Shewmr4_2484 extracellular solute-binding protein, family 5; extracellular solute-binding protein	2937254..2938897	Shewanella loihica PV-4	4921344
YP_001094624.1	CDS	Shew_2499	NC_009092.1	2938897	2939928	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2553 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	2938897..2939928	Shewanella loihica PV-4	4921345
YP_001094625.1	CDS	Shew_2500	NC_009092.1	2939915	2940805	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	2939915..2940805	Shewanella loihica PV-4	4921346
YP_001094626.1	CDS	Shew_2501	NC_009092.1	2940818	2941831	D	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-related protein; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: she:Shewmr4_2487 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase	2940818..2941831	Shewanella loihica PV-4	4921347
YP_001094627.1	CDS	Shew_2502	NC_009092.1	2941806	2942591	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2488 ABC transporter-related protein; ABC transporter-like protein	2941806..2942591	Shewanella loihica PV-4	4921348
YP_001094628.1	CDS	Shew_2503	NC_009092.1	2942696	2943898	D	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase	2942696..2943898	Shewanella loihica PV-4	4921349
YP_001094629.1	CDS	Shew_2504	NC_009092.1	2944391	2946256	R	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase	complement(2944391..2946256)	Shewanella loihica PV-4	4921350
YP_001094630.1	CDS	Shew_2505	NC_009092.1	2946482	2946754	R	PFAM: histone family protein DNA-binding protein; KEGG: sfr:Sfri_2593 histone family protein DNA-binding protein; histone family protein DNA-binding protein	complement(2946482..2946754)	Shewanella loihica PV-4	4921351
YP_001094631.1	CDS	Shew_2506	NC_009092.1	2947014	2949371	R	KEGG: shm:Shewmr7_2561 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La	complement(2947014..2949371)	Shewanella loihica PV-4	4921352
YP_001094632.1	CDS	clpX	NC_009092.1	2949498	2950778	R	binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX	complement(2949498..2950778)	Shewanella loihica PV-4	4921353
YP_001094633.1	CDS	clpP	NC_009092.1	2950863	2951474	R	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit	complement(2950863..2951474)	Shewanella loihica PV-4	4921354
YP_001094634.1	CDS	tig	NC_009092.1	2951564	2952868	R	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor	complement(2951564..2952868)	Shewanella loihica PV-4	4921276
YP_001094635.1	CDS	Shew_2510	NC_009092.1	2953769	2954623	D	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	2953769..2954623	Shewanella loihica PV-4	4920915
YP_001094636.1	CDS	cysS	NC_009092.1	2954783	2956162	R	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase	complement(2954783..2956162)	Shewanella loihica PV-4	4921278
YP_001094637.1	CDS	Shew_2512	NC_009092.1	2956409	2956921	D	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl isomerase	2956409..2956921	Shewanella loihica PV-4	4921279
YP_001094638.1	CDS	Shew_2513	NC_009092.1	2956940	2957668	D	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase	2956940..2957668	Shewanella loihica PV-4	4921280
YP_001094639.1	CDS	Shew_2514	NC_009092.1	2957742	2958512	R	PFAM: tRNA--hydroxylase; KEGG: shm:Shewmr7_2569 tRNA hydroxylase; tRNA--hydroxylase	complement(2957742..2958512)	Shewanella loihica PV-4	4921281
YP_001094640.1	CDS	Shew_2515	NC_009092.1	2958763	2959359	D	PFAM: protein of unknown function DUF1282; KEGG: she:Shewmr4_2502 protein of unknown function DUF1282; hypothetical protein	2958763..2959359	Shewanella loihica PV-4	4921282
YP_001094641.1	CDS	Shew_2516	NC_009092.1	2959443	2961113	R	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase	complement(2959443..2961113)	Shewanella loihica PV-4	4921283
YP_001094642.1	CDS	Shew_2517	NC_009092.1	2961319	2963613	R	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B	complement(2961319..2963613)	Shewanella loihica PV-4	4921284
YP_001094643.1	CDS	Shew_2518	NC_009092.1	2963606	2963845	R	PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A; FeoA family protein	complement(2963606..2963845)	Shewanella loihica PV-4	4921285
YP_001094644.1	CDS	Shew_2519	NC_009092.1	2964239	2965207	D	TIGRFAM: cytochrome C family protein; KEGG: shm:Shewmr7_2574 cytochrome c family protein; cytochrome C family protein	2964239..2965207	Shewanella loihica PV-4	4921286
YP_001094645.1	CDS	Shew_2520	NC_009092.1	2965223	2967334	D	KEGG: she:Shewmr4_2507 outer membrane protein, putative; outer membrane protein	2965223..2967334	Shewanella loihica PV-4	4921287
YP_001094646.1	CDS	Shew_2521	NC_009092.1	2967363	2969282	D	KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF	2967363..2969282	Shewanella loihica PV-4	4921288
YP_001094647.1	CDS	Shew_2522	NC_009092.1	2969343	2971505	D	KEGG: shm:Shewmr7_2577 decaheme cytochrome c; decaheme cytochrome c	2969343..2971505	Shewanella loihica PV-4	4921289
YP_001094648.1	CDS	Shew_2523	NC_009092.1	2972045	2974318	D	KEGG: shm:Shewmr7_2577 decaheme cytochrome c; hypothetical protein	2972045..2974318	Shewanella loihica PV-4	4921228
YP_001094649.1	CDS	Shew_2524	NC_009092.1	2974805	2976982	D	KEGG: shm:Shewmr7_2577 decaheme cytochrome c; decaheme cytochrome c	2974805..2976982	Shewanella loihica PV-4	4921229
YP_001094650.1	CDS	Shew_2525	NC_009092.1	2977355	2979325	D	KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c	2977355..2979325	Shewanella loihica PV-4	4921230
YP_001094651.1	CDS	Shew_2526	NC_009092.1	2979407	2980396	D	TIGRFAM: cytochrome C family protein; KEGG: shm:Shewmr7_2579 cytochrome c family protein; cytochrome C family protein	2979407..2980396	Shewanella loihica PV-4	4921231
YP_001094652.1	CDS	Shew_2527	NC_009092.1	2980409	2982508	D	KEGG: shm:Shewmr7_2580 outer membrane protein precursor MtrB; outer membrane protein MtrB	2980409..2982508	Shewanella loihica PV-4	4921232
YP_001094653.1	CDS	Shew_2528	NC_009092.1	2982665	2983828	D	PFAM: sugar diacid recognition domain protein; KEGG: she:Shewmr4_2516 transcriptional regulator, CdaR; transcriptional regulator CdaR	2982665..2983828	Shewanella loihica PV-4	4921233
YP_001094654.1	CDS	Shew_2529	NC_009092.1	2983886	2985622	R	PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0886 pseudouridine synthase; pseudouridine synthase	complement(2983886..2985622)	Shewanella loihica PV-4	4921234
YP_001094655.1	CDS	Shew_2530	NC_009092.1	2985754	2986725	R	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: vpa:VP2377 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein	complement(2985754..2986725)	Shewanella loihica PV-4	4921235
YP_001094656.1	CDS	Shew_2531	NC_009092.1	2986836	2987738	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VP2378 transcriptional regulator, LysR family; LysR family transcriptional regulator	2986836..2987738	Shewanella loihica PV-4	4921236
YP_001094657.1	CDS	Shew_2532	NC_009092.1	2988971	2989774	D	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I); peptidase C26	2988971..2989774	Shewanella loihica PV-4	4921237
YP_001094658.1	CDS	Shew_2533	NC_009092.1	2990037	2991395	D	PFAM: Gluconate transporter; Citrate transporter; KEGG: shm:Shewmr7_2586 gluconate transporter; gluconate transporter	2990037..2991395	Shewanella loihica PV-4	4921238
YP_001094659.1	CDS	Shew_2534	NC_009092.1	2991493	2992638	D	PFAM: glycerate kinase; KEGG: she:Shewmr4_2519 glycerate kinase; glycerate kinase	2991493..2992638	Shewanella loihica PV-4	4921239
YP_001094660.1	CDS	Shew_2535	NC_009092.1	2992865	2994505	D	PFAM: Pyridoxal-dependent decarboxylase; KEGG: she:Shewmr4_2520 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase	2992865..2994505	Shewanella loihica PV-4	4921240
YP_001094661.1	CDS	Shew_2536	NC_009092.1	2994546	2995016	R	PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: pha:PSHAa1311 hypothetical protein; thiol-disulfide oxidoreductase	complement(2994546..2995016)	Shewanella loihica PV-4	4921241
YP_001094662.1	CDS	Shew_2537	NC_009092.1	2995324	2996262	D	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator	2995324..2996262	Shewanella loihica PV-4	4921242
YP_001094663.1	CDS	Shew_2538	NC_009092.1	2996479	2997216	D	PFAM: AzlC family protein; KEGG: she:Shewmr4_2528 AzlC family protein; AzlC family protein	2996479..2997216	Shewanella loihica PV-4	4921153
YP_001094664.1	CDS	Shew_2539	NC_009092.1	2997213	2997518	D	PFAM: branched-chain amino acid transport; KEGG: she:Shewmr4_2529 branched-chain amino acid transport; branched-chain amino acid transport	2997213..2997518	Shewanella loihica PV-4	4921154
YP_001094665.1	CDS	Shew_2540	NC_009092.1	2997531	2997842	D	PFAM: NIPSNAP family containing protein; KEGG: bur:Bcep18194_B0447 protein of unknown function DUF1099; NIPSNAP family protein	2997531..2997842	Shewanella loihica PV-4	4921155
YP_001094666.1	CDS	Shew_2541	NC_009092.1	2997867	2998553	R	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: shm:Shewmr7_2605 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein	complement(2997867..2998553)	Shewanella loihica PV-4	4921156
YP_001094667.1	CDS	Shew_2542	NC_009092.1	2998654	2999112	R	PFAM: transcription activator, effector binding; KEGG: she:Shewmr4_2539 transcription activator, effector binding; transcription activator, effector binding	complement(2998654..2999112)	Shewanella loihica PV-4	4921157
YP_001094668.1	CDS	Shew_2543	NC_009092.1	2999246	2999665	R	KEGG: cps:CPS_3399 glyoxalase family protein; glyoxalase family protein	complement(2999246..2999665)	Shewanella loihica PV-4	4921158
YP_001094669.1	CDS	Shew_2544	NC_009092.1	2999834	3001588	R	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: shm:Shewmr7_2608 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit	complement(2999834..3001588)	Shewanella loihica PV-4	4921159
YP_001094670.1	CDS	Shew_2545	NC_009092.1	3001822	3002727	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_3320 diguanylate cyclase; diguanylate cyclase	complement(3001822..3002727)	Shewanella loihica PV-4	4921160
YP_001094671.1	CDS	Shew_2546	NC_009092.1	3002815	3003735	R	KEGG: sfr:Sfri_1423 hypothetical protein; hypothetical protein	complement(3002815..3003735)	Shewanella loihica PV-4	4921161
YP_001094672.1	CDS	Shew_2547	NC_009092.1	3003986	3004849	D	PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0787 pseudouridine synthase; pseudouridine synthase	3003986..3004849	Shewanella loihica PV-4	4921162
YP_001094673.1	CDS	Shew_2548	NC_009092.1	3004857	3006845	R	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vfi:VFA0260 glutathione-regulated potassium-efflux system protein KefC; potassium efflux system protein	complement(3004857..3006845)	Shewanella loihica PV-4	4921163
YP_001094674.1	CDS	Shew_2549	NC_009092.1	3006851	3007468	R	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vvy:VV2527 putative NADPH-quinone reductase; NAD(P)H dehydrogenase (quinone)	complement(3006851..3007468)	Shewanella loihica PV-4	4921164
YP_001094675.1	CDS	Shew_2550	NC_009092.1	3007699	3008244	R	PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_0926 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	complement(3007699..3008244)	Shewanella loihica PV-4	4921165
YP_001094676.1	CDS	Shew_2551	NC_009092.1	3008237	3009202	R	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase	complement(3008237..3009202)	Shewanella loihica PV-4	4921166
YP_001094677.1	CDS	Shew_2552	NC_009092.1	3009276	3009677	R	KEGG: son:SO1675 hypothetical protein; hypothetical protein	complement(3009276..3009677)	Shewanella loihica PV-4	4921092
YP_001094678.1	CDS	Shew_2553	NC_009092.1	3009796	3010566	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_2667 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	3009796..3010566	Shewanella loihica PV-4	4921093
YP_001094679.1	CDS	Shew_2554	NC_009092.1	3010647	3011288	R	receptor for colicin S4; outer membrane protein W	complement(3010647..3011288)	Shewanella loihica PV-4	4921094
YP_001094680.1	CDS	Shew_2555	NC_009092.1	3012529	3012921	R	KEGG: shm:Shewmr7_1695 hypothetical protein; hypothetical protein	complement(3012529..3012921)	Shewanella loihica PV-4	4921095
YP_001094681.1	CDS	Shew_2556	NC_009092.1	3012950	3013813	R	KEGG: shm:Shewmr7_1694 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II	complement(3012950..3013813)	Shewanella loihica PV-4	4921096
YP_001094682.1	CDS	Shew_2557	NC_009092.1	3013951	3014871	R	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1693 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(3013951..3014871)	Shewanella loihica PV-4	4921097
YP_001094683.1	CDS	Shew_2558	NC_009092.1	3015276	3016148	D	TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase	3015276..3016148	Shewanella loihica PV-4	4921098
YP_001094684.1	CDS	Shew_2559	NC_009092.1	3016221	3016757	R	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase	complement(3016221..3016757)	Shewanella loihica PV-4	4921099
YP_001094685.1	CDS	Shew_2560	NC_009092.1	3016939	3018471	D	PFAM: helix-turn-helix domain protein; KEGG: she:Shewmr4_3851 transcriptional regulator, XRE family; XRE family transcriptional regulator	3016939..3018471	Shewanella loihica PV-4	4921100
YP_001094686.1	CDS	Shew_2561	NC_009092.1	3018550	3020091	R	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase	complement(3018550..3020091)	Shewanella loihica PV-4	4921101
YP_001094687.1	CDS	Shew_2562	NC_009092.1	3020357	3020827	R	PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1157 putative transcriptional regulator, MarR family; MarR family transcriptional regulator	complement(3020357..3020827)	Shewanella loihica PV-4	4921102
YP_001094688.1	CDS	Shew_2563	NC_009092.1	3021146	3022141	D	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ppr:PBPRB1158 hypothetical alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase	3021146..3022141	Shewanella loihica PV-4	4921103
YP_001094689.1	CDS	Shew_2564	NC_009092.1	3022340	3023152	D	PFAM: MltA-interacting MipA family protein; KEGG: vpa:VPA0318 putative outer membrane protein OmpV; MltA-interacting MipA family protein	3022340..3023152	Shewanella loihica PV-4	4921104
YP_001094690.1	CDS	Shew_2565	NC_009092.1	3023374	3023628	R	KEGG: sfr:Sfri_3620 hypothetical protein; hypothetical protein	complement(3023374..3023628)	Shewanella loihica PV-4	4921105
YP_001094691.1	CDS	Shew_2566	NC_009092.1	3023766	3024239	R	KEGG: son:SO4656 hypothetical protein; hypothetical protein	complement(3023766..3024239)	Shewanella loihica PV-4	4921054
YP_001094692.1	CDS	Shew_2567	NC_009092.1	3024276	3025259	R	PFAM: MORN variant repeat protein; KEGG: fnu:FN2119 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein	complement(3024276..3025259)	Shewanella loihica PV-4	4921055
YP_001094693.1	CDS	Shew_2568	NC_009092.1	3025644	3027632	R	PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_2391 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase	complement(3025644..3027632)	Shewanella loihica PV-4	4921056
YP_001094694.1	CDS	Shew_2569	NC_009092.1	3027951	3028352	D	PFAM: regulatory protein, MerR; KEGG: sdn:Sden_2244 regulatory protein, MerR; MerR family transcriptional regulator	3027951..3028352	Shewanella loihica PV-4	4921057
YP_001094695.1	CDS	Shew_2570	NC_009092.1	3028464	3029633	D	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2394 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	3028464..3029633	Shewanella loihica PV-4	4921058
YP_001094696.1	CDS	Shew_2571	NC_009092.1	3029723	3031330	D	PFAM: carboxyl transferase; KEGG: sdn:Sden_2246 propionyl-CoA carboxylase; propionyl-CoA carboxylase	3029723..3031330	Shewanella loihica PV-4	4921059
YP_001094697.1	CDS	Shew_2572	NC_009092.1	3031379	3032179	D	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2396 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	3031379..3032179	Shewanella loihica PV-4	4921060
YP_001094698.1	CDS	Shew_2573	NC_009092.1	3032237	3034270	D	PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: shm:Shewmr7_2397 carbamoyl-phosphate synthase L chain, ATP-binding protein; carbamoyl-phosphate synthase subunit L	3032237..3034270	Shewanella loihica PV-4	4921061
YP_001094699.1	CDS	Shew_2574	NC_009092.1	3034273	3035178	D	PFAM: pyruvate carboxyltransferase; KEGG: sfr:Sfri_2731 pyruvate carboxyltransferase; pyruvate carboxyltransferase	3034273..3035178	Shewanella loihica PV-4	4921062
YP_001094700.1	CDS	Shew_2575	NC_009092.1	3035225	3035926	D	KEGG: shm:Shewmr7_2399 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A	3035225..3035926	Shewanella loihica PV-4	4921063
YP_001094701.1	CDS	Shew_2576	NC_009092.1	3035939	3036595	D	KEGG: sdn:Sden_2252 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B	3035939..3036595	Shewanella loihica PV-4	4921064
YP_001094702.1	CDS	Shew_2577	NC_009092.1	3036686	3038260	R	KEGG: shm:Shewmr7_1220 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor	complement(3036686..3038260)	Shewanella loihica PV-4	4921065
YP_001094703.1	CDS	Shew_2578	NC_009092.1	3038648	3039451	D	PFAM: extracellular solute-binding protein, family 3; KEGG: ctc:CTC02323 sensory transduction protein kinase; extracellular solute-binding protein	3038648..3039451	Shewanella loihica PV-4	4921066
YP_001094704.1	CDS	Shew_2579	NC_009092.1	3039632	3040210	R	catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase	complement(3039632..3040210)	Shewanella loihica PV-4	4921067
YP_001094705.1	CDS	Shew_2580	NC_009092.1	3041118	3043151	D	KEGG: shm:Shewmr7_1421 hypothetical protein; hypothetical protein	3041118..3043151	Shewanella loihica PV-4	4921068
YP_001094706.1	CDS	Shew_2581	NC_009092.1	3043336	3045480	D	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: she:Shewmr4_1355 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp	3043336..3045480	Shewanella loihica PV-4	4920887
YP_001094707.1	CDS	Shew_2582	NC_009092.1	3045587	3047152	R	PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC	complement(3045587..3047152)	Shewanella loihica PV-4	4920888
YP_001094708.1	CDS	Shew_2583	NC_009092.1	3047596	3048519	R	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: shm:Shewmr7_1418 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha	complement(3047596..3048519)	Shewanella loihica PV-4	4920889
YP_001094709.1	CDS	Shew_2584	NC_009092.1	3048520	3049269	R	PFAM: electron transfer flavoprotein beta-subunit; KEGG: sfr:Sfri_2748 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta	complement(3048520..3049269)	Shewanella loihica PV-4	4920890
YP_001094710.1	CDS	Shew_2585	NC_009092.1	3049582	3049974	D	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shm:Shewmr7_1416 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS	3049582..3049974	Shewanella loihica PV-4	4920891
YP_001094711.1	CDS	Shew_2586	NC_009092.1	3050329	3053469	D	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: she:Shewmr4_1350 amidohydrolase; amidohydrolase	3050329..3053469	Shewanella loihica PV-4	4920892
YP_001094712.1	CDS	Shew_2587	NC_009092.1	3053469	3054737	D	KEGG: son:SO3149 hypothetical protein; hypothetical protein	3053469..3054737	Shewanella loihica PV-4	4920893
YP_001094713.1	CDS	Shew_2588	NC_009092.1	3054815	3055231	D	KEGG: shm:Shewmr7_1413 lipoprotein, putative; putative lipoprotein	3054815..3055231	Shewanella loihica PV-4	4920894
YP_001094714.1	CDS	Shew_2589	NC_009092.1	3055273	3056010	D	PFAM: protein of unknown function UPF0066; KEGG: she:Shewmr4_1347 protein of unknown function UPF0066; hypothetical protein	3055273..3056010	Shewanella loihica PV-4	4920895
YP_001094715.1	CDS	Shew_2590	NC_009092.1	3056013	3056642	D	PFAM: transferase hexapeptide repeat containing protein; KEGG: sfr:Sfri_2752 transferase hexapeptide repeat-containing protein; hexapaptide repeat-containing transferase	3056013..3056642	Shewanella loihica PV-4	4920896
YP_001094716.1	CDS	Shew_2591	NC_009092.1	3056652	3056915	R	hypothetical protein	complement(3056652..3056915)	Shewanella loihica PV-4	4920897
YP_001094717.1	CDS	Shew_2592	NC_009092.1	3057319	3058905	D	PFAM: peptidase M28; KEGG: sfr:Sfri_1287 peptidase M28; peptidase M28	3057319..3058905	Shewanella loihica PV-4	4920898
YP_001094718.1	CDS	Shew_2593	NC_009092.1	3059120	3060844	D	activates fatty acids by binding to coenzyme A; AMP-binding protein	3059120..3060844	Shewanella loihica PV-4	4920899
YP_001094719.1	CDS	Shew_2594	NC_009092.1	3060953	3061225	R	hypothetical protein	complement(3060953..3061225)	Shewanella loihica PV-4	4920900
YP_001094720.1	CDS	Shew_2595	NC_009092.1	3061373	3061678	R	KEGG: cps:CPS_0198 hypothetical protein; hypothetical protein	complement(3061373..3061678)	Shewanella loihica PV-4	4920727
YP_001094721.1	CDS	Shew_2596	NC_009092.1	3062187	3063896	D	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase	3062187..3063896	Shewanella loihica PV-4	4920728
YP_001094722.1	CDS	Shew_2597	NC_009092.1	3064009	3064725	R	hypothetical protein	complement(3064009..3064725)	Shewanella loihica PV-4	4920729
YP_001094723.1	CDS	Shew_2598	NC_009092.1	3065072	3065479	R	KEGG: rpd:RPD_3143 hypothetical protein; hypothetical protein	complement(3065072..3065479)	Shewanella loihica PV-4	4920730
YP_001094724.1	CDS	Shew_2599	NC_009092.1	3065659	3065994	D	PFAM: helix-turn-helix, HxlR type; KEGG: vch:VCA0094 hypothetical protein; HxlR family transcriptional regulator	3065659..3065994	Shewanella loihica PV-4	4920731
YP_001094725.1	CDS	Shew_2600	NC_009092.1	3066472	3066813	R	KEGG: son:SO2061 hypothetical protein; hypothetical protein	complement(3066472..3066813)	Shewanella loihica PV-4	4920732
YP_001094726.1	CDS	Shew_2601	NC_009092.1	3066922	3067329	R	KEGG: shm:Shewmr7_0997 hypothetical protein; hypothetical protein	complement(3066922..3067329)	Shewanella loihica PV-4	4920733
YP_001094727.1	CDS	Shew_2602	NC_009092.1	3068367	3068666	R	hypothetical protein	complement(3068367..3068666)	Shewanella loihica PV-4	4920734
YP_001094728.1	CDS	Shew_2603	NC_009092.1	3068762	3069088	R	KEGG: pol:Bpro_4802 hypothetical protein; hypothetical protein	complement(3068762..3069088)	Shewanella loihica PV-4	4920735
YP_001094729.1	CDS	Shew_2604	NC_009092.1	3069224	3070024	R	PFAM: restriction endonuclease; KEGG: sfr:Sfri_2536 hypothetical protein; restriction endonuclease	complement(3069224..3070024)	Shewanella loihica PV-4	4920736
YP_001094730.1	CDS	Shew_2605	NC_009092.1	3070906	3072132	R	KEGG: cps:CPS_3411 putative phenylacetate-coenzyme A ligase; putative phenylacetate-coenzyme A ligase	complement(3070906..3072132)	Shewanella loihica PV-4	4920737
YP_001094731.1	CDS	Shew_2606	NC_009092.1	3072142	3072960	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sfr:Sfri_1836 ABC transporter-related protein; ABC transporter-like protein	complement(3072142..3072960)	Shewanella loihica PV-4	4920738
YP_001094732.1	CDS	Shew_2607	NC_009092.1	3073024	3074268	R	KEGG: sfr:Sfri_1835 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; putative branched-chain amino acid ABC transporter	complement(3073024..3074268)	Shewanella loihica PV-4	4920739
YP_001094733.1	CDS	Shew_2608	NC_009092.1	3074392	3075465	R	PFAM: inner-membrane translocator; KEGG: cps:CPS_3414 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator	complement(3074392..3075465)	Shewanella loihica PV-4	4920740
YP_001094734.1	CDS	Shew_2609	NC_009092.1	3075526	3076419	R	PFAM: inner-membrane translocator; KEGG: cps:CPS_3415 putative branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator	complement(3075526..3076419)	Shewanella loihica PV-4	4920741
YP_001094735.1	CDS	Shew_2610	NC_009092.1	3076416	3078383	R	PFAM: AMP-dependent synthetase and ligase; KEGG: cps:CPS_3416 putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding; AMP-dependent synthetase and ligase	complement(3076416..3078383)	Shewanella loihica PV-4	4920709
YP_001094736.1	CDS	Shew_2611	NC_009092.1	3078383	3079180	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: cps:CPS_3417 putative branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein	complement(3078383..3079180)	Shewanella loihica PV-4	4920710
YP_001094737.1	CDS	Shew_2612	NC_009092.1	3079299	3080339	R	KEGG: cps:CPS_3418 hypothetical protein; hypothetical protein	complement(3079299..3080339)	Shewanella loihica PV-4	4920711
YP_001094738.1	CDS	Shew_2613	NC_009092.1	3080597	3084097	D	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sfr:Sfri_1829 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase	3080597..3084097	Shewanella loihica PV-4	4920712
YP_001094739.1	CDS	Shew_2614	NC_009092.1	3084176	3084844	R	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_3420 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator	complement(3084176..3084844)	Shewanella loihica PV-4	4920713
YP_001094740.1	CDS	Shew_2615	NC_009092.1	3085347	3086471	D	PFAM: Patatin; KEGG: shm:Shewmr7_1409 patatin; patatin	3085347..3086471	Shewanella loihica PV-4	4920714
YP_001094741.1	CDS	Shew_2616	NC_009092.1	3086492	3087169	R	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bpm:BURPS1710b_0124 GDSL-like lipase/acylhydrolase domain protein; GDSL family lipase	complement(3086492..3087169)	Shewanella loihica PV-4	4920715
YP_001094742.1	CDS	Shew_2617	NC_009092.1	3087240	3089189	R	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2690 potassium efflux system protein; potassium efflux system protein	complement(3087240..3089189)	Shewanella loihica PV-4	4920716
YP_001094743.1	CDS	Shew_2618	NC_009092.1	3089489	3090376	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2691 diguanylate cyclase; diguanylate cyclase	3089489..3090376	Shewanella loihica PV-4	4920717
YP_001094744.1	CDS	Shew_2619	NC_009092.1	3090549	3091973	R	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: shm:Shewmr7_2692 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase	complement(3090549..3091973)	Shewanella loihica PV-4	4920718
YP_001094745.1	CDS	dnaE	NC_009092.1	3091974	3095447	R	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha	complement(3091974..3095447)	Shewanella loihica PV-4	4920719
YP_001094746.1	CDS	rnhB	NC_009092.1	3095620	3096246	R	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII	complement(3095620..3096246)	Shewanella loihica PV-4	4920720
YP_001094747.1	CDS	lpxB	NC_009092.1	3096246	3097394	R	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase	complement(3096246..3097394)	Shewanella loihica PV-4	4920721
YP_001094748.1	CDS	Shew_2623	NC_009092.1	3097490	3098257	R	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase	complement(3097490..3098257)	Shewanella loihica PV-4	4920722
YP_001094749.1	CDS	fabZ	NC_009092.1	3098254	3098715	R	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase	complement(3098254..3098715)	Shewanella loihica PV-4	4923886
YP_001094750.1	CDS	lpxD	NC_009092.1	3098746	3099771	R	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	complement(3098746..3099771)	Shewanella loihica PV-4	4923887
YP_001094751.1	CDS	Shew_2626	NC_009092.1	3099778	3100272	R	PFAM: outer membrane chaperone Skp (OmpH); KEGG: shm:Shewmr7_2699 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp	complement(3099778..3100272)	Shewanella loihica PV-4	4923888
YP_001094752.1	CDS	Shew_2627	NC_009092.1	3100342	3102825	R	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15)	complement(3100342..3102825)	Shewanella loihica PV-4	4923889
YP_001094753.1	CDS	Shew_2628	NC_009092.1	3102857	3104218	R	KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease	complement(3102857..3104218)	Shewanella loihica PV-4	4923890
YP_001094754.1	CDS	Shew_2629	NC_009092.1	3104289	3105476	R	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase	complement(3104289..3105476)	Shewanella loihica PV-4	4923891
YP_001094755.1	CDS	Shew_2630	NC_009092.1	3105479	3106264	R	PFAM: phosphatidate cytidylyltransferase; KEGG: shm:Shewmr7_2703 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase	complement(3105479..3106264)	Shewanella loihica PV-4	4923892
YP_001094756.1	CDS	Shew_2631	NC_009092.1	3106357	3107148	R	KEGG: shm:Shewmr7_2704 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase	complement(3106357..3107148)	Shewanella loihica PV-4	4923893
YP_001094757.1	CDS	frr	NC_009092.1	3107230	3107787	R	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor	complement(3107230..3107787)	Shewanella loihica PV-4	4923894
YP_001094758.1	CDS	pyrH	NC_009092.1	3107823	3108566	R	Catalyzes the phosphorylation of UMP to UDP; uridylate kinase	complement(3107823..3108566)	Shewanella loihica PV-4	4923895
YP_001094759.1	CDS	tsf	NC_009092.1	3108700	3109548	R	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts	complement(3108700..3109548)	Shewanella loihica PV-4	4923896
YP_001094760.1	CDS	rpsB	NC_009092.1	3109668	3110396	R	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2	complement(3109668..3110396)	Shewanella loihica PV-4	4923897
YP_001094761.1	CDS	Shew_2636	NC_009092.1	3110676	3111473	D	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase	3110676..3111473	Shewanella loihica PV-4	4920680
YP_001094762.1	CDS	Shew_2637	NC_009092.1	3111555	3114128	D	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase	3111555..3114128	Shewanella loihica PV-4	4923899
YP_001094763.1	CDS	dapD	NC_009092.1	3114164	3114988	D	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase	3114164..3114988	Shewanella loihica PV-4	4923900
YP_001094764.1	CDS	Shew_2639	NC_009092.1	3115199	3115543	D	KEGG: she:Shewmr4_2645 hypothetical protein; hypothetical protein	3115199..3115543	Shewanella loihica PV-4	4924117
YP_001094765.1	CDS	purU	NC_009092.1	3115652	3116485	R	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase	complement(3115652..3116485)	Shewanella loihica PV-4	4924118
YP_001094766.1	CDS	Shew_2641	NC_009092.1	3116519	3117991	R	TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: sfr:Sfri_1264 PTS system, glucose-like IIB subunint; PTS system glucose-like transporter subunit IIB	complement(3116519..3117991)	Shewanella loihica PV-4	4924119
YP_001094767.1	CDS	Shew_2642	NC_009092.1	3117943	3118407	R	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin	complement(3117943..3118407)	Shewanella loihica PV-4	4924120
YP_001094768.1	CDS	Shew_2643	NC_009092.1	3118781	3119602	R	PFAM: pseudouridine synthase; KEGG: sfr:Sfri_1262 pseudouridylate synthase; pseudouridylate synthase	complement(3118781..3119602)	Shewanella loihica PV-4	4924121
YP_001094769.1	CDS	Shew_2644	NC_009092.1	3119613	3119930	R	PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein; hypothetical protein	complement(3119613..3119930)	Shewanella loihica PV-4	4924122
YP_001094770.1	CDS	Shew_2645	NC_009092.1	3120114	3121127	D	KEGG: she:Shewmr4_2652 hypothetical protein; hypothetical protein	3120114..3121127	Shewanella loihica PV-4	4924123
YP_001094771.1	CDS	Shew_2646	NC_009092.1	3121124	3121513	D	KEGG: son:SO1617 hypothetical protein; hypothetical protein	3121124..3121513	Shewanella loihica PV-4	4924124
YP_001094772.1	CDS	Shew_2647	NC_009092.1	3123264	3123563	R	KEGG: son:SO1615 hypothetical protein; hypothetical protein	complement(3123264..3123563)	Shewanella loihica PV-4	4924125
YP_001094773.1	CDS	Shew_2648	NC_009092.1	3123556	3124206	R	PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5	complement(3123556..3124206)	Shewanella loihica PV-4	4924126
YP_001094774.1	CDS	Shew_2649	NC_009092.1	3124347	3124577	D	KEGG: son:SO1613 hypothetical protein; hypothetical protein	3124347..3124577	Shewanella loihica PV-4	4924127
YP_001094775.1	CDS	Shew_2650	NC_009092.1	3124727	3125098	R	KEGG: son:SO1612 hypothetical protein; hypothetical protein	complement(3124727..3125098)	Shewanella loihica PV-4	4924128
YP_001094776.1	CDS	Shew_2651	NC_009092.1	3125247	3125582	D	KEGG: sfr:Sfri_1252 hypothetical protein; hypothetical protein	3125247..3125582	Shewanella loihica PV-4	4924129
YP_001094777.1	CDS	Shew_2652	NC_009092.1	3125582	3126355	D	KEGG: shm:Shewmr7_2726 hypothetical protein; hypothetical protein	3125582..3126355	Shewanella loihica PV-4	4924130
YP_001094778.1	CDS	Shew_2653	NC_009092.1	3126400	3127062	R	putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd	complement(3126400..3127062)	Shewanella loihica PV-4	4923305
YP_001094779.1	CDS	queF	NC_009092.1	3127090	3127980	D	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase	3127090..3127980	Shewanella loihica PV-4	4923306
YP_001094780.1	CDS	Shew_2655	NC_009092.1	3128303	3129493	D	KEGG: sde:Sde_2267 hypothetical protein; hypothetical protein	3128303..3129493	Shewanella loihica PV-4	4923307
YP_001094781.1	CDS	Shew_2656	NC_009092.1	3129695	3130606	R	PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase	complement(3129695..3130606)	Shewanella loihica PV-4	4923308
YP_001094782.1	CDS	Shew_2657	NC_009092.1	3130786	3132051	R	KEGG: ppr:PBPRB1123 hypothetical protein; hypothetical protein	complement(3130786..3132051)	Shewanella loihica PV-4	4923309
YP_001094783.1	CDS	Shew_2658	NC_009092.1	3132095	3132778	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: ppr:PBPRB1124 putative ABC transporter, ATP-binding protein; ABC transporter-like protein	complement(3132095..3132778)	Shewanella loihica PV-4	4923310
YP_001094784.1	CDS	Shew_2659	NC_009092.1	3132800	3134065	R	PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRB1125 hypothetical protein; hypothetical protein	complement(3132800..3134065)	Shewanella loihica PV-4	4923311
YP_001094785.1	CDS	Shew_2660	NC_009092.1	3134052	3135284	R	PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRB1126 hypothetical protein; hypothetical protein	complement(3134052..3135284)	Shewanella loihica PV-4	4923312
YP_001094786.1	CDS	Shew_2661	NC_009092.1	3135394	3136206	R	KEGG: vpa:VPA0557 hypothetical protein; hypothetical protein	complement(3135394..3136206)	Shewanella loihica PV-4	4923313
YP_001094787.1	CDS	Shew_2662	NC_009092.1	3136343	3136702	R	PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel; cupin	complement(3136343..3136702)	Shewanella loihica PV-4	4923314
YP_001094788.1	CDS	Shew_2663	NC_009092.1	3136916	3138964	R	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G	complement(3136916..3138964)	Shewanella loihica PV-4	4923315
YP_001094789.1	CDS	Shew_2664	NC_009092.1	3139363	3140217	D	KEGG: shm:Shewmr7_2732 transcriptional regulator, putative; transcriptional regulator	3139363..3140217	Shewanella loihica PV-4	4923316
YP_001094790.1	CDS	Shew_2665	NC_009092.1	3140217	3148076	D	PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: ppr:PBPRA1460 omega-3 polyunsaturated fatty acid synthase PfaA; beta-ketoacyl synthase	3140217..3148076	Shewanella loihica PV-4	4923317
YP_001094791.1	CDS	Shew_2666	NC_009092.1	3148073	3150223	D	KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB	3148073..3150223	Shewanella loihica PV-4	4923318
YP_001094792.1	CDS	Shew_2667	NC_009092.1	3150223	3156009	D	PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	3150223..3156009	Shewanella loihica PV-4	4923120
YP_001094793.1	CDS	Shew_2668	NC_009092.1	3156144	3157781	D	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: sfr:Sfri_1218 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase	3156144..3157781	Shewanella loihica PV-4	4923121
YP_001094794.1	CDS	Shew_2669	NC_009092.1	3157890	3160238	R	PFAM: peptidase S45, penicillin amidase; KEGG: pha:PSHAa0079 hydrolase; penicillin amidase	complement(3157890..3160238)	Shewanella loihica PV-4	4923122
YP_001094795.1	CDS	Shew_2670	NC_009092.1	3160362	3161273	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_0384 transcriptional regulator, LysR family protein; LysR family transcriptional regulator	complement(3160362..3161273)	Shewanella loihica PV-4	4923123
YP_001094796.1	CDS	Shew_2671	NC_009092.1	3161532	3162494	R	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: sth:STH2125 putative lipase; alpha/beta hydrolase domain-containing protein	complement(3161532..3162494)	Shewanella loihica PV-4	4923124
YP_001094797.1	CDS	Shew_2672	NC_009092.1	3162660	3163445	R	catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase	complement(3162660..3163445)	Shewanella loihica PV-4	4923125
YP_001094798.1	CDS	caiC	NC_009092.1	3163503	3165059	R	PFAM: AMP-dependent synthetase and ligase; KEGG: stm:STM0071 crotonobetaine/carnitine-CoA ligase; putative crotonobetaine/carnitine-CoA ligase	complement(3163503..3165059)	Shewanella loihica PV-4	4923126
YP_001094799.1	CDS	Shew_2674	NC_009092.1	3165068	3166294	R	catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase	complement(3165068..3166294)	Shewanella loihica PV-4	4923127
YP_001094800.1	CDS	Shew_2675	NC_009092.1	3166455	3167591	R	catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase	complement(3166455..3167591)	Shewanella loihica PV-4	4923128
YP_001094801.1	CDS	Shew_2676	NC_009092.1	3167643	3169187	R	catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter	complement(3167643..3169187)	Shewanella loihica PV-4	4923129
YP_001094802.1	CDS	Shew_2677	NC_009092.1	3170094	3170867	D	required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA	3170094..3170867	Shewanella loihica PV-4	4923130
YP_001094803.1	CDS	Shew_2678	NC_009092.1	3170882	3171823	D	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: stm:STM0076 putative electron transfer flavoprotein, carnitine metabolism; electron transfer flavoprotein subunit alpha	3170882..3171823	Shewanella loihica PV-4	4923131
YP_001094804.1	CDS	Shew_2679	NC_009092.1	3171890	3173182	D	PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: stt:t0078 FixC protein; FAD dependent oxidoreductase	3171890..3173182	Shewanella loihica PV-4	4923132
YP_001094805.1	CDS	Shew_2680	NC_009092.1	3173179	3173466	D	KEGG: stm:STM1351 putative ferredoxin; putative ferredoxin	3173179..3173466	Shewanella loihica PV-4	4923133
YP_001094806.1	CDS	Shew_2681	NC_009092.1	3173838	3175154	D	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: stm:STM0079 putative transport protein; general substrate transporter	3173838..3175154	Shewanella loihica PV-4	4923134
YP_001094807.1	CDS	Shew_2682	NC_009092.1	3175416	3176543	D	KEGG: son:SO1412 hypothetical protein; hypothetical protein	3175416..3176543	Shewanella loihica PV-4	4923191
YP_001094808.1	CDS	Shew_2683	NC_009092.1	3176734	3176985	D	KEGG: sfr:Sfri_3228 hypothetical protein; hypothetical protein	3176734..3176985	Shewanella loihica PV-4	4923192
YP_001094809.1	CDS	Shew_2684	NC_009092.1	3177228	3178094	D	KEGG: she:Shewmr4_3453 hypothetical protein; hypothetical protein	3177228..3178094	Shewanella loihica PV-4	4923193
YP_001094810.1	CDS	Shew_2685	NC_009092.1	3178527	3179114	R	KEGG: cps:CPS_2706 putative lipoprotein; putative lipoprotein	complement(3178527..3179114)	Shewanella loihica PV-4	4923194
YP_001094811.1	CDS	Shew_2686	NC_009092.1	3179572	3180159	R	KEGG: cps:CPS_2706 putative lipoprotein; putative lipoprotein	complement(3179572..3180159)	Shewanella loihica PV-4	4923195
YP_001094812.1	CDS	Shew_2687	NC_009092.1	3180622	3181428	D	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter substrate-binding protein	3180622..3181428	Shewanella loihica PV-4	4923196
YP_001094813.1	CDS	Shew_2688	NC_009092.1	3181552	3182889	R	KEGG: sfr:Sfri_3605 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase	complement(3181552..3182889)	Shewanella loihica PV-4	4923197
YP_001094814.1	CDS	Shew_2689	NC_009092.1	3183112	3183957	D	PFAM: sulfotransferase; KEGG: sfr:Sfri_0789 sulfotransferase; sulfotransferase	3183112..3183957	Shewanella loihica PV-4	4923198
YP_001094815.1	CDS	Shew_2690	NC_009092.1	3184027	3186465	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_1347 TonB-dependent receptor; TonB-dependent receptor, plug	complement(3184027..3186465)	Shewanella loihica PV-4	4923199
YP_001094816.1	CDS	Shew_2691	NC_009092.1	3186780	3187310	R	KEGG: shm:Shewmr7_3765 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein	complement(3186780..3187310)	Shewanella loihica PV-4	4923200
YP_001094817.1	CDS	Shew_2692	NC_009092.1	3187556	3188341	R	PFAM: cytochrome B561; KEGG: shm:Shewmr7_2387 cytochrome b561; cytochrome B561	complement(3187556..3188341)	Shewanella loihica PV-4	4923201
YP_001094818.1	CDS	Shew_2693	NC_009092.1	3188495	3189448	R	KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein	complement(3188495..3189448)	Shewanella loihica PV-4	4923202
YP_001094819.1	CDS	Shew_2694	NC_009092.1	3189711	3190028	D	PFAM: Propeptide, PepSY amd peptidase M4; KEGG: sfr:Sfri_1133 propeptide, PepSY amd peptidase M4; peptidase	3189711..3190028	Shewanella loihica PV-4	4923203
YP_001094820.1	CDS	Shew_2695	NC_009092.1	3190051	3190731	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: she:Shewmr4_3817 two component transcriptional regulator, winged helix family; two component transcriptional regulator	3190051..3190731	Shewanella loihica PV-4	4923204
YP_001094821.1	CDS	Shew_2696	NC_009092.1	3190749	3192203	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: sdn:Sden_1263 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase	3190749..3192203	Shewanella loihica PV-4	4922981
YP_001094822.1	CDS	Shew_2697	NC_009092.1	3192364	3193740	D	KEGG: she:Shewmr4_3819 hypothetical protein; hypothetical protein	3192364..3193740	Shewanella loihica PV-4	4922982
YP_001094823.1	CDS	Shew_2698	NC_009092.1	3193908	3194420	R	KEGG: she:Shewmr4_2687 hypothetical protein; hypothetical protein	complement(3193908..3194420)	Shewanella loihica PV-4	4922983
YP_001094824.1	CDS	Shew_2699	NC_009092.1	3194642	3195220	R	PFAM: cyclic nucleotide-binding; KEGG: shm:Shewmr7_2756 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein	complement(3194642..3195220)	Shewanella loihica PV-4	4922984
YP_001094825.1	CDS	Shew_2700	NC_009092.1	3195374	3195763	D	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppr:PBPRB1064 hypothetical protein; antibiotic biosynthesis monooxygenase	3195374..3195763	Shewanella loihica PV-4	4922985
YP_001094826.1	CDS	Shew_2701	NC_009092.1	3195846	3196913	R	KEGG: mac:MA3214 hypothetical protein; hypothetical protein	complement(3195846..3196913)	Shewanella loihica PV-4	4922986
YP_001094827.1	CDS	Shew_2702	NC_009092.1	3197490	3198260	R	hypothetical protein	complement(3197490..3198260)	Shewanella loihica PV-4	4922987
YP_001094828.1	CDS	Shew_2703	NC_009092.1	3198442	3200523	D	PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpf:lpl1180 hypothetical protein; Sel1 domain-containing protein	3198442..3200523	Shewanella loihica PV-4	4922988
YP_001094829.1	CDS	Shew_2704	NC_009092.1	3200581	3201798	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F	complement(3200581..3201798)	Shewanella loihica PV-4	4922989
YP_001094830.1	CDS	Shew_2705	NC_009092.1	3201840	3202448	R	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E	complement(3201840..3202448)	Shewanella loihica PV-4	4922990
YP_001094831.1	CDS	Shew_2706	NC_009092.1	3202453	3203076	R	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D	complement(3202453..3203076)	Shewanella loihica PV-4	4922991
YP_001094832.1	CDS	Shew_2707	NC_009092.1	3203078	3203848	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C	complement(3203078..3203848)	Shewanella loihica PV-4	4922992
YP_001094833.1	CDS	Shew_2708	NC_009092.1	3203957	3205171	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B	complement(3203957..3205171)	Shewanella loihica PV-4	4922993
YP_001094834.1	CDS	Shew_2709	NC_009092.1	3205171	3206541	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A	complement(3205171..3206541)	Shewanella loihica PV-4	4922994
YP_001094835.1	CDS	Shew_2710	NC_009092.1	3207004	3208293	D	KEGG: sdn:Sden_0823 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase	3207004..3208293	Shewanella loihica PV-4	4922995
YP_001094836.1	CDS	Shew_2711	NC_009092.1	3208607	3209395	D	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A0140 transcriptional regulator, AraC family; AraC family transcriptional regulator	3208607..3209395	Shewanella loihica PV-4	4922941
YP_001094837.1	CDS	Shew_2712	NC_009092.1	3209487	3210416	D	PFAM: peptidase S15; KEGG: pae:PA3829 hypothetical protein; peptidase S15	3209487..3210416	Shewanella loihica PV-4	4922942
YP_001094838.1	CDS	Shew_2713	NC_009092.1	3210601	3211713	D	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: hch:HCH_00654 response regulator containing a CheY-like receiver domain and an HD-GYP domain; metal dependent phosphohydrolase	3210601..3211713	Shewanella loihica PV-4	4922943
YP_001094839.1	CDS	Shew_2714	NC_009092.1	3212018	3212773	R	KEGG: sfr:Sfri_3123 hypothetical protein; hypothetical protein	complement(3212018..3212773)	Shewanella loihica PV-4	4922944
YP_001094840.1	CDS	Shew_2715	NC_009092.1	3213214	3213945	R	PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein	complement(3213214..3213945)	Shewanella loihica PV-4	4922945
YP_001094841.1	CDS	Shew_2716	NC_009092.1	3214473	3216041	D	PFAM: peptidase S41; KEGG: sfr:Sfri_0592 peptidase S41; peptidase S41	3214473..3216041	Shewanella loihica PV-4	4922946
YP_001094842.1	CDS	Shew_2717	NC_009092.1	3216050	3216439	D	KEGG: sfr:Sfri_0593 hypothetical protein; hypothetical protein	3216050..3216439	Shewanella loihica PV-4	4922947
YP_001094843.1	CDS	Shew_2718	NC_009092.1	3216809	3219220	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_0415 TonB-dependent receptor; TonB-dependent receptor	3216809..3219220	Shewanella loihica PV-4	4922948
YP_001094844.1	CDS	Shew_2719	NC_009092.1	3219369	3219554	D	KEGG: vch:VC1858 hypothetical protein; hypothetical protein	3219369..3219554	Shewanella loihica PV-4	4922949
YP_001094845.1	CDS	Shew_2720	NC_009092.1	3219709	3221550	R	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sdn:Sden_3290 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin	complement(3219709..3221550)	Shewanella loihica PV-4	4922950
YP_001094846.1	CDS	Shew_2721	NC_009092.1	3221882	3222154	D	KEGG: son:SO1588 hypothetical protein; hypothetical protein	3221882..3222154	Shewanella loihica PV-4	4922951
YP_001094847.1	CDS	Shew_2722	NC_009092.1	3222236	3222943	D	KEGG: sdn:Sden_2403 hypothetical protein; hypothetical protein	3222236..3222943	Shewanella loihica PV-4	4922952
YP_001094848.1	CDS	Shew_2723	NC_009092.1	3222990	3223526	D	PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0617 putative MutT/NUDIX family protein; NUDIX hydrolase	3222990..3223526	Shewanella loihica PV-4	4922953
YP_001094849.1	CDS	Shew_2724	NC_009092.1	3223621	3224535	R	PFAM: Indigoidine synthase A family protein; KEGG: hch:HCH_01392 uncharacterized enzyme involved in pigment biosynthesis; indigoidine synthase A family protein	complement(3223621..3224535)	Shewanella loihica PV-4	4922954
YP_001094850.1	CDS	Shew_2725	NC_009092.1	3224529	3225620	R	PFAM: PfkB domain protein; Helix-turn-helix, type 11 domain protein; KEGG: hch:HCH_01393 sugar kinase, ribokinase family; ribokinase-like domain-containing protein	complement(3224529..3225620)	Shewanella loihica PV-4	4922921
YP_001094851.1	CDS	Shew_2726	NC_009092.1	3225951	3226403	R	PFAM: protein of unknown function DUF188; KEGG: cps:CPS_3584 hypothetical protein; hypothetical protein	complement(3225951..3226403)	Shewanella loihica PV-4	4922922
YP_001094852.1	CDS	Shew_2727	NC_009092.1	3226571	3227269	D	KEGG: shm:Shewmr7_2761 hypothetical protein; hypothetical protein	3226571..3227269	Shewanella loihica PV-4	4922923
YP_001094853.1	CDS	Shew_2728	NC_009092.1	3227282	3228163	D	KEGG: lic:LIC10692 hypothetical protein; hypothetical protein	3227282..3228163	Shewanella loihica PV-4	4922924
YP_001094854.1	CDS	Shew_2729	NC_009092.1	3228287	3228877	R	PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_2762 transcriptional regulator, TetR family; TetR family transcriptional regulator	complement(3228287..3228877)	Shewanella loihica PV-4	4922925
YP_001094855.1	CDS	Shew_2730	NC_009092.1	3229038	3229673	D	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: son:SO1577 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein	3229038..3229673	Shewanella loihica PV-4	4922926
YP_001094856.1	CDS	Shew_2731	NC_009092.1	3229835	3230395	R	hypothetical protein	complement(3229835..3230395)	Shewanella loihica PV-4	4922927
YP_001094857.1	CDS	Shew_2732	NC_009092.1	3230428	3230904	R	KEGG: mag:amb3154 hypothetical protein; hypothetical protein	complement(3230428..3230904)	Shewanella loihica PV-4	4922928
YP_001094858.1	CDS	Shew_2733	NC_009092.1	3231014	3231358	R	PFAM: GCN5-related N-acetyltransferase; KEGG: chy:CHY_0724 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5	complement(3231014..3231358)	Shewanella loihica PV-4	4922929
YP_001094859.1	CDS	Shew_2734	NC_009092.1	3231868	3232251	R	TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: shm:Shewmr7_0571 carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase	complement(3231868..3232251)	Shewanella loihica PV-4	4922930
YP_001094860.1	CDS	Shew_2735	NC_009092.1	3232509	3233423	R	PFAM: Patatin; KEGG: she:Shewmr4_3733 patatin; patatin	complement(3232509..3233423)	Shewanella loihica PV-4	4922931
YP_001094861.1	CDS	Shew_2736	NC_009092.1	3233472	3233948	R	PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_2839 transcriptional regulator, MarR family; MarR family transcriptional regulator	complement(3233472..3233948)	Shewanella loihica PV-4	4922932
YP_001094862.1	CDS	Shew_2737	NC_009092.1	3234151	3234939	R	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cps:CPS_4694 transcriptional regulator, AraC family; AraC family transcriptional regulator	complement(3234151..3234939)	Shewanella loihica PV-4	4922933
YP_001094863.1	CDS	Shew_2738	NC_009092.1	3234978	3235421	R	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_2623 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase	complement(3234978..3235421)	Shewanella loihica PV-4	4922934
YP_001094864.1	CDS	Shew_2739	NC_009092.1	3235811	3237238	D	PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein	3235811..3237238	Shewanella loihica PV-4	4922935
YP_001094865.1	CDS	Shew_2740	NC_009092.1	3237800	3238333	R	PFAM: YfaZ family protein; KEGG: shm:Shewmr7_2770 YfaZ family protein; hypothetical protein	complement(3237800..3238333)	Shewanella loihica PV-4	4922907
YP_001094866.1	CDS	Shew_2741	NC_009092.1	3238632	3239120	D	PFAM: glutathione peroxidase; KEGG: sdn:Sden_2552 glutathione peroxidase; glutathione peroxidase	3238632..3239120	Shewanella loihica PV-4	4922908
YP_001094867.1	CDS	Shew_2742	NC_009092.1	3240013	3241833	R	PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: she:Shewmr4_2706 peptidase M1, membrane alanine aminopeptidase; peptidase M1, membrane alanine aminopeptidase	complement(3240013..3241833)	Shewanella loihica PV-4	4922909
YP_001094868.1	CDS	Shew_2743	NC_009092.1	3242067	3242948	D	PFAM: Peptidase M9A, collagenase C-terminal domain protein; KEGG: cps:CPS_1458 microbial collagenase; collagenase	3242067..3242948	Shewanella loihica PV-4	4922910
YP_001094869.1	CDS	Shew_2744	NC_009092.1	3242973	3243902	R	PFAM: putative esterase; KEGG: pat:Patl_3925 putative esterase; putative esterase	complement(3242973..3243902)	Shewanella loihica PV-4	4922911
YP_001094870.1	CDS	Shew_2745	NC_009092.1	3244646	3245404	R	KEGG: csa:Csal_2788 hypothetical protein; hypothetical protein	complement(3244646..3245404)	Shewanella loihica PV-4	4922912
YP_001094871.1	CDS	Shew_2746	NC_009092.1	3245455	3246135	R	KEGG: rsp:RSP_3545 hypothetical protein; hypothetical protein	complement(3245455..3246135)	Shewanella loihica PV-4	4922913
YP_001094872.1	CDS	Shew_2747	NC_009092.1	3247141	3248112	R	TIGRFAM: phosphate binding protein; KEGG: sfr:Sfri_2766 phosphate binding protein; phosphate binding protein	complement(3247141..3248112)	Shewanella loihica PV-4	4922914
YP_001094873.1	CDS	Shew_2748	NC_009092.1	3248436	3249728	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase	complement(3248436..3249728)	Shewanella loihica PV-4	4922915
YP_001094874.1	CDS	Shew_2749	NC_009092.1	3250045	3250770	R	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator	complement(3250045..3250770)	Shewanella loihica PV-4	4922916
YP_001094875.1	CDS	Shew_2750	NC_009092.1	3250922	3251872	R	PFAM: porin, Gram-negative type; KEGG: shm:Shewmr7_2778 porin, gram-negative type; porin	complement(3250922..3251872)	Shewanella loihica PV-4	4922917
YP_001094876.1	CDS	rdgC	NC_009092.1	3252174	3253085	D	Required for efficient pilin antigenic variation; recombination associated protein	3252174..3253085	Shewanella loihica PV-4	4922918
YP_001094877.1	CDS	Shew_2752	NC_009092.1	3253246	3255042	R	PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_2712 peptidase M61 domain protein; peptidase M61 domain-containing protein	complement(3253246..3255042)	Shewanella loihica PV-4	4922919
YP_001094878.1	CDS	Shew_2753	NC_009092.1	3255170	3257326	D	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_2713 TPR repeat-containing protein; hypothetical protein	3255170..3257326	Shewanella loihica PV-4	4922920
YP_001094879.1	CDS	Shew_2754	NC_009092.1	3257518	3259074	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2782 diguanylate cyclase; diguanylate cyclase	3257518..3259074	Shewanella loihica PV-4	4922749
YP_001094880.1	CDS	Shew_2755	NC_009092.1	3259149	3260501	D	PFAM: conserved hypothetical protein 730; KEGG: shm:Shewmr7_2783 conserved hypothetical protein 730; hypothetical protein	3259149..3260501	Shewanella loihica PV-4	4922750
YP_001094881.1	CDS	xni	NC_009092.1	3260520	3261290	D	has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX	3260520..3261290	Shewanella loihica PV-4	4922751
YP_001094882.1	CDS	Shew_2757	NC_009092.1	3261443	3261829	D	KEGG: shm:Shewmr7_2785 hypothetical protein; hypothetical protein	3261443..3261829	Shewanella loihica PV-4	4922752
YP_001094883.1	CDS	Shew_2758	NC_009092.1	3261853	3262335	R	KEGG: gvi:gll2461 hypothetical protein; hypothetical protein	complement(3261853..3262335)	Shewanella loihica PV-4	4922753
YP_001094884.1	CDS	Shew_2759	NC_009092.1	3262457	3265270	R	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: shm:Shewmr7_2790 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase	complement(3262457..3265270)	Shewanella loihica PV-4	4922754
YP_001094885.1	CDS	Shew_2760	NC_009092.1	3265570	3266577	D	catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase	3265570..3266577	Shewanella loihica PV-4	4922755
YP_001094886.1	CDS	Shew_2761	NC_009092.1	3266754	3267845	R	KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase	complement(3266754..3267845)	Shewanella loihica PV-4	4922756
YP_001094887.1	CDS	Shew_2762	NC_009092.1	3267937	3268326	R	PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein	complement(3267937..3268326)	Shewanella loihica PV-4	4922757
YP_001094888.1	CDS	Shew_2763	NC_009092.1	3268319	3269041	R	PFAM: dienelactone hydrolase; KEGG: shm:Shewmr7_2794 hypothetical protein; dienelactone hydrolase	complement(3268319..3269041)	Shewanella loihica PV-4	4922758
YP_001094889.1	CDS	Shew_2764	NC_009092.1	3269102	3270013	R	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA	complement(3269102..3270013)	Shewanella loihica PV-4	4922759
YP_001094890.1	CDS	Shew_2765	NC_009092.1	3270196	3270426	D	KEGG: sfr:Sfri_2784 hypothetical protein; hypothetical protein	3270196..3270426	Shewanella loihica PV-4	4922760
YP_001094891.1	CDS	Shew_2766	NC_009092.1	3270798	3272255	R	Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI	complement(3270798..3272255)	Shewanella loihica PV-4	4922761
YP_001094892.1	CDS	motB	NC_009092.1	3272510	3273454	R	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB	complement(3272510..3273454)	Shewanella loihica PV-4	4922762
YP_001094893.1	CDS	Shew_2768	NC_009092.1	3273459	3274226	R	Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA	complement(3273459..3274226)	Shewanella loihica PV-4	4922732
YP_001094894.1	CDS	Shew_2769	NC_009092.1	3274622	3274861	D	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: shm:Shewmr7_2802 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit	3274622..3274861	Shewanella loihica PV-4	4922733
YP_001094895.1	CDS	Shew_2770	NC_009092.1	3274862	3275743	D	PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase	3274862..3275743	Shewanella loihica PV-4	4922734
YP_001094896.1	CDS	Shew_2771	NC_009092.1	3275766	3277634	D	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase	3275766..3277634	Shewanella loihica PV-4	4922735
YP_001094897.1	CDS	Shew_2772	NC_009092.1	3277720	3278337	R	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE	complement(3277720..3278337)	Shewanella loihica PV-4	4922736
YP_001094898.1	CDS	ppnK	NC_009092.1	3278438	3279316	D	catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase	3278438..3279316	Shewanella loihica PV-4	4922737
YP_001094899.1	CDS	Shew_2774	NC_009092.1	3279362	3280426	R	TIGRFAM: TonB family protein; KEGG: son:SO4043 TonB domain protein; TonB family protein	complement(3279362..3280426)	Shewanella loihica PV-4	4922738
YP_001094900.1	CDS	Shew_2775	NC_009092.1	3280656	3282026	R	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; MATE efflux family protein	complement(3280656..3282026)	Shewanella loihica PV-4	4922739
YP_001094901.1	CDS	Shew_2776	NC_009092.1	3282139	3283212	R	PFAM: cobalamin synthesis protein, P47K; KEGG: shm:Shewmr7_2829 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K	complement(3282139..3283212)	Shewanella loihica PV-4	4922740
YP_001094902.1	CDS	Shew_2777	NC_009092.1	3283298	3284653	R	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_2752 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase	complement(3283298..3284653)	Shewanella loihica PV-4	4922741
YP_001094903.1	CDS	Shew_2778	NC_009092.1	3284738	3287770	R	KEGG: she:Shewmr4_2753 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	complement(3284738..3287770)	Shewanella loihica PV-4	4922742
YP_001094904.1	CDS	Shew_2779	NC_009092.1	3288098	3288907	D	KEGG: sfr:Sfri_1026 conserved hypothetical amino acid ABC transporter; amino acid ABC transporter	3288098..3288907	Shewanella loihica PV-4	4922743
YP_001094905.1	CDS	Shew_2780	NC_009092.1	3288994	3289434	D	PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1139 thioesterase superfamily protein; thioesterase superfamily protein	3288994..3289434	Shewanella loihica PV-4	4922744
YP_001094906.1	CDS	Shew_2781	NC_009092.1	3289458	3290954	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_1066 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase	complement(3289458..3290954)	Shewanella loihica PV-4	4922745
YP_001094907.1	CDS	Shew_2782	NC_009092.1	3291026	3291868	R	PFAM: HDOD; KEGG: shm:Shewmr7_1137 putative signal transduction protein; putative signal transduction protein	complement(3291026..3291868)	Shewanella loihica PV-4	4922746
YP_001094908.1	CDS	Shew_2783	NC_009092.1	3292157	3293518	D	PFAM: peptidase U32; KEGG: shm:Shewmr7_1136 peptidase U32; peptidase U32	3292157..3293518	Shewanella loihica PV-4	4922717
YP_001094909.1	CDS	Shew_2784	NC_009092.1	3294030	3295358	D	PFAM: phosphoesterase, PA-phosphatase related; KEGG: ppr:PBPRB1965 putative PAP2 family protein; PA-phosphatase-like phosphoesterase	3294030..3295358	Shewanella loihica PV-4	4922718
YP_001094910.1	CDS	Shew_2785	NC_009092.1	3295591	3295848	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_1135 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	3295591..3295848	Shewanella loihica PV-4	4922719
YP_001094911.1	CDS	Shew_2786	NC_009092.1	3295949	3296461	R	PFAM: Sterol-binding domain protein; KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein	complement(3295949..3296461)	Shewanella loihica PV-4	4922720
YP_001094912.1	CDS	Shew_2787	NC_009092.1	3296658	3297659	D	PFAM: peptidase U32; KEGG: shm:Shewmr7_1133 peptidase U32; peptidase U32	3296658..3297659	Shewanella loihica PV-4	4922721
YP_001094913.1	CDS	Shew_2788	NC_009092.1	3297692	3298537	D	PFAM: peptidase U32; KEGG: she:Shewmr4_1060 peptidase U32; peptidase U32	3297692..3298537	Shewanella loihica PV-4	4922722
YP_001094914.1	CDS	Shew_2789	NC_009092.1	3298623	3299348	R	KEGG: she:Shewmr4_1059 hypothetical protein; hypothetical protein	complement(3298623..3299348)	Shewanella loihica PV-4	4922723
YP_001094915.1	CDS	Shew_2790	NC_009092.1	3299791	3301146	D	PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1058 nucleoside recognition domain protein; nucleoside recognition domain-containing protein	3299791..3301146	Shewanella loihica PV-4	4922724
YP_001094916.1	CDS	Shew_2791	NC_009092.1	3301398	3305078	D	PFAM: ATP-binding region, ATPase domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: son:SO0341 sensory box protein; PAS/PAC sensor signal transduction histidine kinase	3301398..3305078	Shewanella loihica PV-4	4922725
YP_001094917.1	CDS	Shew_2792	NC_009092.1	3305141	3306958	D	PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase	3305141..3306958	Shewanella loihica PV-4	4922726
YP_001094918.1	CDS	Shew_2793	NC_009092.1	3307200	3308333	R	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase	complement(3307200..3308333)	Shewanella loihica PV-4	4922727
YP_001094919.1	CDS	Shew_2794	NC_009092.1	3308689	3309117	D	PFAM: CBS domain containing protein; KEGG: she:Shewmr4_1055 CBS domain containing protein; hypothetical protein	3308689..3309117	Shewanella loihica PV-4	4922728
YP_001094920.1	CDS	Shew_2795	NC_009092.1	3309263	3310621	R	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_3048 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease	complement(3309263..3310621)	Shewanella loihica PV-4	4922729
YP_001094921.1	CDS	Shew_2796	NC_009092.1	3311100	3311300	D	PFAM: periplasmic nitrate reductase NapE; KEGG: sfr:Sfri_1996 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE	3311100..3311300	Shewanella loihica PV-4	4922730
YP_001094922.1	CDS	Shew_2797	NC_009092.1	3311331	3312509	D	TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sfr:Sfri_1995 trimethylamine-N-oxide reductase C-type cytochrome TorC; trimethylamine-N-oxide reductase c-type cytochrome TorC	3311331..3312509	Shewanella loihica PV-4	4922531
YP_001094923.1	CDS	Shew_2798	NC_009092.1	3312522	3315008	D	TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; trimethylamine-N-oxide reductase TorA	3312522..3315008	Shewanella loihica PV-4	4922532
YP_001094924.1	CDS	torD	NC_009092.1	3315038	3315673	D	TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD	3315038..3315673	Shewanella loihica PV-4	4922533
YP_001094925.1	CDS	Shew_2800	NC_009092.1	3315685	3316911	R	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_1161 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase	complement(3315685..3316911)	Shewanella loihica PV-4	4922534
YP_001094926.1	CDS	Shew_2801	NC_009092.1	3317080	3320205	R	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase	complement(3317080..3320205)	Shewanella loihica PV-4	4922535
YP_001094927.1	CDS	Shew_2802	NC_009092.1	3320273	3321436	D	periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT	3320273..3321436	Shewanella loihica PV-4	4922536
YP_001094928.1	CDS	Shew_2803	NC_009092.1	3321446	3322171	R	response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR	complement(3321446..3322171)	Shewanella loihica PV-4	4922537
YP_001094929.1	CDS	Shew_2804	NC_009092.1	3322456	3322824	D	PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1046 type IV pilus assembly PilZ; type IV pilus assembly PilZ	3322456..3322824	Shewanella loihica PV-4	4922538
YP_001094930.1	CDS	Shew_2805	NC_009092.1	3323306	3324391	D	PFAM: Choloylglycine hydrolase; KEGG: bba:Bd0665 choloylglycine hydrolase; choloylglycine hydrolase	3323306..3324391	Shewanella loihica PV-4	4922539
YP_001094931.1	CDS	Shew_2806	NC_009092.1	3324475	3324975	R	PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2181 acetyltransferase, GNAT family; N-acetyltransferase GCN5	complement(3324475..3324975)	Shewanella loihica PV-4	4922540
YP_001094932.1	CDS	Shew_2807	NC_009092.1	3325002	3326375	R	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA	complement(3325002..3326375)	Shewanella loihica PV-4	4922541
YP_001094933.1	CDS	Shew_2808	NC_009092.1	3326705	3329095	D	PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ; type IV pilus assembly PilZ	3326705..3329095	Shewanella loihica PV-4	4922542
YP_001094934.1	CDS	Shew_2809	NC_009092.1	3329105	3330031	R	KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase	complement(3329105..3330031)	Shewanella loihica PV-4	4922543
YP_001094935.1	CDS	Shew_2810	NC_009092.1	3330294	3331277	R	KEGG: she:Shewmr4_1042 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB	complement(3330294..3331277)	Shewanella loihica PV-4	4922544
YP_001094936.1	CDS	Shew_2811	NC_009092.1	3331320	3332054	D	KEGG: shm:Shewmr7_1106 membrane protein; membrane protein	3331320..3332054	Shewanella loihica PV-4	4922545
YP_001094937.1	CDS	deoD	NC_009092.1	3332289	3332999	R	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase	complement(3332289..3332999)	Shewanella loihica PV-4	4922482
YP_001094938.1	CDS	Shew_2813	NC_009092.1	3333109	3334326	R	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase	complement(3333109..3334326)	Shewanella loihica PV-4	4922483
YP_001094939.1	CDS	deoA	NC_009092.1	3334338	3335669	R	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase	complement(3334338..3335669)	Shewanella loihica PV-4	4922484
YP_001094940.1	CDS	Shew_2815	NC_009092.1	3335827	3336600	R	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase	complement(3335827..3336600)	Shewanella loihica PV-4	4922485
YP_001094941.1	CDS	Shew_2816	NC_009092.1	3337052	3337885	R	PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: shm:Shewmr7_1101 nucleoside-specific channel-forming protein, Tsx; nucleoside-specific channel-forming protein, Tsx	complement(3337052..3337885)	Shewanella loihica PV-4	4922486
YP_001094942.1	CDS	Shew_2817	NC_009092.1	3338227	3339486	R	TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shm:Shewmr7_1100 nucleoside transporter; nucleoside transporter	complement(3338227..3339486)	Shewanella loihica PV-4	4922487
YP_001094943.1	CDS	Shew_2818	NC_009092.1	3339664	3340494	R	PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease	complement(3339664..3340494)	Shewanella loihica PV-4	4922488
YP_001094944.1	CDS	Shew_2819	NC_009092.1	3340475	3340765	R	KEGG: sfr:Sfri_0998 hypothetical protein; hypothetical protein	complement(3340475..3340765)	Shewanella loihica PV-4	4922489
YP_001094945.1	CDS	prfC	NC_009092.1	3341022	3342602	R	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3	complement(3341022..3342602)	Shewanella loihica PV-4	4922490
YP_001094946.1	CDS	Shew_2821	NC_009092.1	3342798	3343688	R	lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI	complement(3342798..3343688)	Shewanella loihica PV-4	4922491
YP_001094947.1	CDS	Shew_2822	NC_009092.1	3343826	3345928	R	KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase	complement(3343826..3345928)	Shewanella loihica PV-4	4922492
YP_001094948.1	CDS	Shew_2823	NC_009092.1	3346124	3348157	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1095 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase	3346124..3348157	Shewanella loihica PV-4	4922493
YP_001094949.1	CDS	rpsO	NC_009092.1	3348265	3348534	R	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15	complement(3348265..3348534)	Shewanella loihica PV-4	4922494
YP_001094950.1	CDS	truB	NC_009092.1	3348630	3349577	R	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B	complement(3348630..3349577)	Shewanella loihica PV-4	4922495
YP_001094951.1	CDS	rbfA	NC_009092.1	3349577	3349999	R	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A	complement(3349577..3349999)	Shewanella loihica PV-4	4922333
YP_001094952.1	CDS	infB	NC_009092.1	3350124	3352781	R	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2	complement(3350124..3352781)	Shewanella loihica PV-4	4922334
YP_001094953.1	CDS	nusA	NC_009092.1	3352808	3354307	R	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA	complement(3352808..3354307)	Shewanella loihica PV-4	4922335
YP_001094954.1	CDS	Shew_2829	NC_009092.1	3354335	3354820	R	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein	complement(3354335..3354820)	Shewanella loihica PV-4	4922336
YP_001094955.1	CDS	secG	NC_009092.1	3355338	3355682	R	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG	complement(3355338..3355682)	Shewanella loihica PV-4	4920682
YP_001094956.1	CDS	Shew_2831	NC_009092.1	3355684	3356466	R	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase	complement(3355684..3356466)	Shewanella loihica PV-4	4922338
YP_001094957.1	CDS	glmM	NC_009092.1	3356635	3357966	R	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase	complement(3356635..3357966)	Shewanella loihica PV-4	4922339
YP_001094958.1	CDS	Shew_2833	NC_009092.1	3358047	3358895	R	KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase	complement(3358047..3358895)	Shewanella loihica PV-4	4922340
YP_001094959.1	CDS	Shew_2834	NC_009092.1	3358989	3360956	R	KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH	complement(3358989..3360956)	Shewanella loihica PV-4	4922341
YP_001094960.1	CDS	rrmJ	NC_009092.1	3361002	3361631	R	Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J	complement(3361002..3361631)	Shewanella loihica PV-4	4922342
YP_001094961.1	CDS	Shew_2836	NC_009092.1	3361714	3362022	D	PFAM: protein of unknown function UPF0044; KEGG: shm:Shewmr7_1082 protein of unknown function UPF0044; hypothetical protein	3361714..3362022	Shewanella loihica PV-4	4922343
YP_001094962.1	CDS	Shew_2837	NC_009092.1	3362099	3362575	R	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sfr:Sfri_0977 transcription elongation factor GreA; transcription elongation factor GreA	complement(3362099..3362575)	Shewanella loihica PV-4	4922344
YP_001094963.1	CDS	carB	NC_009092.1	3362872	3366093	R	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit	complement(3362872..3366093)	Shewanella loihica PV-4	4922345
YP_001094964.1	CDS	Shew_2839	NC_009092.1	3366114	3367286	R	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit	complement(3366114..3367286)	Shewanella loihica PV-4	4922346
YP_001094965.1	CDS	Shew_2840	NC_009092.1	3367447	3368262	R	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase	complement(3367447..3368262)	Shewanella loihica PV-4	4922347
YP_001094966.1	CDS	Shew_2841	NC_009092.1	3368359	3368976	R	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_1001 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type	complement(3368359..3368976)	Shewanella loihica PV-4	4922271
YP_001094967.1	CDS	Shew_2842	NC_009092.1	3369057	3369845	R	PFAM: peptidase M48, Ste24p; KEGG: shm:Shewmr7_1000 peptidase M48, Ste24p; peptidase M48, Ste24p	complement(3369057..3369845)	Shewanella loihica PV-4	4922272
YP_001094968.1	CDS	Shew_2843	NC_009092.1	3370122	3371252	R	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ	complement(3370122..3371252)	Shewanella loihica PV-4	4922273
YP_001094969.1	CDS	dnaK	NC_009092.1	3371401	3373314	R	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK	complement(3371401..3373314)	Shewanella loihica PV-4	4922274
YP_001094970.1	CDS	Shew_2845	NC_009092.1	3373622	3374548	D	PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_0956 protein of unknown function DUF6, transmembrane; hypothetical protein	3373622..3374548	Shewanella loihica PV-4	4922275
YP_001094971.1	CDS	Shew_2846	NC_009092.1	3374645	3375346	R	KEGG: ilo:IL0884 secreted protein containing internal repeats; hypothetical protein	complement(3374645..3375346)	Shewanella loihica PV-4	4922276
YP_001094972.1	CDS	proA	NC_009092.1	3375574	3376863	R	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase	complement(3375574..3376863)	Shewanella loihica PV-4	4922277
YP_001094973.1	CDS	Shew_2848	NC_009092.1	3376898	3378022	R	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase	complement(3376898..3378022)	Shewanella loihica PV-4	4922278
YP_001094974.1	CDS	Shew_2849	NC_009092.1	3378244	3379533	R	PFAM: Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_0989 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease	complement(3378244..3379533)	Shewanella loihica PV-4	4922279
YP_001094975.1	CDS	Shew_2850	NC_009092.1	3379946	3380050	R	hypothetical protein	complement(3379946..3380050)	Shewanella loihica PV-4	4922280
YP_001094976.1	CDS	Shew_2851	NC_009092.1	3380419	3381951	R	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: she:Shewmr4_0949 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17, leucyl aminopeptidase domain-containing protein	complement(3380419..3381951)	Shewanella loihica PV-4	4922281
YP_001094977.1	CDS	Shew_2852	NC_009092.1	3382375	3383835	D	KEGG: shm:Shewmr7_0986 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase	3382375..3383835	Shewanella loihica PV-4	4922282
YP_001094978.1	CDS	Shew_2853	NC_009092.1	3384389	3384748	R	hypothetical protein	complement(3384389..3384748)	Shewanella loihica PV-4	4922283
YP_001094979.1	CDS	Shew_2854	NC_009092.1	3384775	3385272	R	KEGG: vpa:VP1817 hypothetical protein; hypothetical protein	complement(3384775..3385272)	Shewanella loihica PV-4	4922284
YP_001094980.1	CDS	Shew_2855	NC_009092.1	3385397	3385858	R	KEGG: mes:Meso_1882 hypothetical protein; hypothetical protein	complement(3385397..3385858)	Shewanella loihica PV-4	4922234
YP_001094981.1	CDS	Shew_2856	NC_009092.1	3386915	3387568	R	PFAM: ThiJ/PfpI domain protein; KEGG: vvu:VV12405 putative intracellular protease/amidase; ThiJ/PfpI domain-containing protein	complement(3386915..3387568)	Shewanella loihica PV-4	4922235
YP_001094982.1	CDS	Shew_2857	NC_009092.1	3388466	3389362	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bcn:Bcen_5015 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(3388466..3389362)	Shewanella loihica PV-4	4922236
YP_001094983.1	CDS	Shew_2858	NC_009092.1	3389550	3390734	D	KEGG: bur:Bcep18194_B3098 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase	3389550..3390734	Shewanella loihica PV-4	4922237
YP_001094984.1	CDS	Shew_2859	NC_009092.1	3390755	3391429	D	PFAM: Phosphoglycerate mutase; KEGG: abo:ABO_0956 phosphoglycerate mutase, putative; phosphoglycerate mutase	3390755..3391429	Shewanella loihica PV-4	4922238
YP_001094985.1	CDS	Shew_2860	NC_009092.1	3391405	3392703	D	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: sfr:Sfri_2069 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	3391405..3392703	Shewanella loihica PV-4	4922239
YP_001094986.1	CDS	Shew_2861	NC_009092.1	3392700	3393737	D	PFAM: aminoglycoside phosphotransferase; KEGG: abo:ABO_0958 hypothetical protein; aminoglycoside phosphotransferase	3392700..3393737	Shewanella loihica PV-4	4922240
YP_001094987.1	CDS	Shew_2862	NC_009092.1	3393742	3394509	D	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_C6406 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase	3393742..3394509	Shewanella loihica PV-4	4922241
YP_001094988.1	CDS	Shew_2863	NC_009092.1	3394524	3395270	D	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_B3036 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	3394524..3395270	Shewanella loihica PV-4	4922242
YP_001094989.1	CDS	Shew_2864	NC_009092.1	3395303	3397429	D	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pat:Patl_1916 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase	3395303..3397429	Shewanella loihica PV-4	4922243
YP_001094990.1	CDS	Shew_2865	NC_009092.1	3397601	3398365	R	PFAM: regulatory protein, TetR; KEGG: fal:FRAAL1231 putative TetR-family transcriptional regulator; TetR family transcriptional regulator	complement(3397601..3398365)	Shewanella loihica PV-4	4922244
YP_001094991.1	CDS	Shew_2866	NC_009092.1	3398900	3400609	D	activates fatty acids by binding to coenzyme A; acyl-CoA synthetase	3398900..3400609	Shewanella loihica PV-4	4922245
YP_001094992.1	CDS	Shew_2867	NC_009092.1	3400606	3403890	D	PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pae:PA1400 pyruvate carboxylase subunit A; pyruvate carboxylase, propionyl-CoA carboxylase	3400606..3403890	Shewanella loihica PV-4	4922246
YP_001094993.1	CDS	Shew_2868	NC_009092.1	3404415	3406223	R	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5004 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein	complement(3404415..3406223)	Shewanella loihica PV-4	4922247
YP_001094994.1	CDS	Shew_2869	NC_009092.1	3406441	3408375	R	PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: cps:CPS_3343 putative acylase; peptidase S15	complement(3406441..3408375)	Shewanella loihica PV-4	4921841
YP_001094995.1	CDS	Shew_2870	NC_009092.1	3408585	3411158	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_3344 TonB-dependent receptor; TonB-dependent receptor	complement(3408585..3411158)	Shewanella loihica PV-4	4921842
YP_001094996.1	CDS	Shew_2871	NC_009092.1	3411830	3412909	R	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV	complement(3411830..3412909)	Shewanella loihica PV-4	4921843
YP_001094997.1	CDS	Shew_2872	NC_009092.1	3413077	3413544	R	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: sdn:Sden_0991 bacterioferritin; bacterioferritin	complement(3413077..3413544)	Shewanella loihica PV-4	4921844
YP_001094998.1	CDS	Shew_2873	NC_009092.1	3413555	3414028	R	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: sdn:Sden_0990 bacterioferritin; bacterioferritin	complement(3413555..3414028)	Shewanella loihica PV-4	4921845
YP_001094999.1	CDS	Shew_2874	NC_009092.1	3414314	3414538	R	PFAM: protein of unknown function DUF539; KEGG: shm:Shewmr7_0981 protein of unknown function DUF539; hypothetical protein	complement(3414314..3414538)	Shewanella loihica PV-4	4921846
YP_001095000.1	CDS	Shew_2875	NC_009092.1	3414706	3415722	R	PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_0942 ApbE family lipoprotein; ApbE family lipoprotein	complement(3414706..3415722)	Shewanella loihica PV-4	4921847
YP_001095001.1	CDS	Shew_2876	NC_009092.1	3415828	3417075	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F	complement(3415828..3417075)	Shewanella loihica PV-4	4921848
YP_001095002.1	CDS	Shew_2877	NC_009092.1	3417124	3417732	R	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E	complement(3417124..3417732)	Shewanella loihica PV-4	4921849
YP_001095003.1	CDS	Shew_2878	NC_009092.1	3417738	3418370	R	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D	complement(3417738..3418370)	Shewanella loihica PV-4	4921850
YP_001095004.1	CDS	Shew_2879	NC_009092.1	3418370	3419164	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C	complement(3418370..3419164)	Shewanella loihica PV-4	4921851
YP_001095005.1	CDS	Shew_2880	NC_009092.1	3419157	3420356	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B	complement(3419157..3420356)	Shewanella loihica PV-4	4921852
YP_001095006.1	CDS	Shew_2881	NC_009092.1	3420356	3421690	R	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A	complement(3420356..3421690)	Shewanella loihica PV-4	4921853
YP_001095007.1	CDS	Shew_2882	NC_009092.1	3422269	3422778	R	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase	complement(3422269..3422778)	Shewanella loihica PV-4	4921854
YP_001095008.1	CDS	Shew_2883	NC_009092.1	3423038	3423337	R	PFAM: BolA family protein; KEGG: she:Shewmr4_0932 BolA family protein; BolA family protein	complement(3423038..3423337)	Shewanella loihica PV-4	4921855
YP_001095009.1	CDS	Shew_2884	NC_009092.1	3423463	3423966	R	KEGG: sfr:Sfri_3629 glycine cleavage system regulatory protein-like protein; glycine cleavage system regulatory protein-like protein	complement(3423463..3423966)	Shewanella loihica PV-4	4921813
YP_001095010.1	CDS	Shew_2885	NC_009092.1	3424096	3424743	R	KEGG: shm:Shewmr7_0969 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase	complement(3424096..3424743)	Shewanella loihica PV-4	4921814
YP_001095011.1	CDS	Shew_2886	NC_009092.1	3424854	3426059	D	PFAM: methyltransferase small; KEGG: shm:Shewmr7_0968 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase	3424854..3426059	Shewanella loihica PV-4	4921815
YP_001095012.1	CDS	Shew_2887	NC_009092.1	3426234	3427148	R	KEGG: she:Shewmr4_3149 sterol desaturase family protein; sterol desaturase family protein	complement(3426234..3427148)	Shewanella loihica PV-4	4921816
YP_001095013.1	CDS	Shew_2888	NC_009092.1	3427212	3428264	R	KEGG: shm:Shewmr7_0817 hypothetical protein; hypothetical protein	complement(3427212..3428264)	Shewanella loihica PV-4	4921817
YP_001095014.1	CDS	Shew_2889	NC_009092.1	3428466	3429032	D	PFAM: uncharacterized lipoprotein; KEGG: shm:Shewmr7_0815 uncharacterized lipoprotein; hypothetical protein	3428466..3429032	Shewanella loihica PV-4	4921818
YP_001095015.1	CDS	Shew_2890	NC_009092.1	3429052	3429636	D	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_0814 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase	3429052..3429636	Shewanella loihica PV-4	4921819
YP_001095016.1	CDS	Shew_2891	NC_009092.1	3429823	3430155	D	KEGG: son:SO3813 hypothetical protein; hypothetical protein	3429823..3430155	Shewanella loihica PV-4	4921820
YP_001095017.1	CDS	Shew_2892	NC_009092.1	3430301	3431719	D	PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_0812 major facilitator superfamily MFS_1; major facilitator superfamily transporter	3430301..3431719	Shewanella loihica PV-4	4921821
YP_001095018.1	CDS	Shew_2893	NC_009092.1	3431832	3432317	R	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein	complement(3431832..3432317)	Shewanella loihica PV-4	4921822
YP_001095019.1	CDS	Shew_2894	NC_009092.1	3432475	3432855	D	PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein; VanZ family protein	3432475..3432855	Shewanella loihica PV-4	4921823
YP_001095020.1	CDS	Shew_2895	NC_009092.1	3432852	3433772	D	KEGG: she:Shewmr4_3158 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase	3432852..3433772	Shewanella loihica PV-4	4921824
YP_001095021.1	CDS	Shew_2896	NC_009092.1	3433919	3435430	D	PFAM: sodium:neurotransmitter symporter; KEGG: ppr:PBPRA1510 putative sodium-dependent transporter; sodium:neurotransmitter symporter	3433919..3435430	Shewanella loihica PV-4	4921825
YP_001095022.1	CDS	Shew_2897	NC_009092.1	3435587	3436471	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0041 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(3435587..3436471)	Shewanella loihica PV-4	4921826
YP_001095023.1	CDS	Shew_2898	NC_009092.1	3436624	3436983	D	PFAM: protein of unknown function DUF413; KEGG: vpa:VPA0040 hypothetical protein; hypothetical protein	3436624..3436983	Shewanella loihica PV-4	4921359
YP_001095024.1	CDS	Shew_2899	NC_009092.1	3436987	3438021	D	The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase	3436987..3438021	Shewanella loihica PV-4	4921360
YP_001095025.1	CDS	Shew_2900	NC_009092.1	3438008	3439999	D	PFAM: protein of unknown function DUF1704; KEGG: vvy:VVA0030 hypothetical protein; hypothetical protein	3438008..3439999	Shewanella loihica PV-4	4921361
YP_001095026.1	CDS	Shew_2901	NC_009092.1	3440234	3440908	D	PFAM: phosphoesterase, PA-phosphatase related; KEGG: gbe:GbCGDNIH1_2224 phosphoesterase, PAP2 family; PA-phosphatase-like phosphoesterase	3440234..3440908	Shewanella loihica PV-4	4921362
YP_001095027.1	CDS	Shew_2902	NC_009092.1	3441052	3442491	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_3066 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	3441052..3442491	Shewanella loihica PV-4	4921363
YP_001095028.1	CDS	Shew_2903	NC_009092.1	3442499	3443431	R	KEGG: sfr:Sfri_0729 hypothetical protein; hypothetical protein	complement(3442499..3443431)	Shewanella loihica PV-4	4921364
YP_001095029.1	CDS	Shew_2904	NC_009092.1	3443653	3444501	R	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase	complement(3443653..3444501)	Shewanella loihica PV-4	4921365
YP_001095030.1	CDS	Shew_2905	NC_009092.1	3444564	3445841	R	PFAM: protein of unknown function DUF819; KEGG: shm:Shewmr7_0802 protein of unknown function DUF819; hypothetical protein	complement(3444564..3445841)	Shewanella loihica PV-4	4921366
YP_001095031.1	CDS	Shew_2906	NC_009092.1	3445968	3446756	R	KEGG: shm:Shewmr7_0801 hypothetical protein; hypothetical protein	complement(3445968..3446756)	Shewanella loihica PV-4	4921367
YP_001095032.1	CDS	Shew_2907	NC_009092.1	3446756	3447142	R	PFAM: Invasion gene expression up-regulator, SirB; KEGG: shm:Shewmr7_0800 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB	complement(3446756..3447142)	Shewanella loihica PV-4	4921368
YP_001095033.1	CDS	Shew_2908	NC_009092.1	3447269	3448204	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_A5736 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(3447269..3448204)	Shewanella loihica PV-4	4921369
YP_001095034.1	CDS	Shew_2909	NC_009092.1	3448269	3448682	D	PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2504 acetyltransferase, GNAT family; N-acetyltransferase GCN5	3448269..3448682	Shewanella loihica PV-4	4921370
YP_001095035.1	CDS	Shew_2910	NC_009092.1	3448770	3449012	R	hypothetical protein	complement(3448770..3449012)	Shewanella loihica PV-4	4921371
YP_001095036.1	CDS	Shew_2911	NC_009092.1	3449202	3450044	R	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: shm:Shewmr7_0798 modification methylase, HemK family; HemK family modification methylase	complement(3449202..3450044)	Shewanella loihica PV-4	4921372
YP_001095037.1	CDS	prfA	NC_009092.1	3450083	3451168	R	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1	complement(3450083..3451168)	Shewanella loihica PV-4	4921373
YP_001095038.1	CDS	hemA	NC_009092.1	3451182	3452432	R	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase	complement(3451182..3452432)	Shewanella loihica PV-4	4921173
YP_001095039.1	CDS	Shew_2914	NC_009092.1	3452752	3453402	D	PFAM: outer membrane lipoprotein LolB; KEGG: she:Shewmr4_3171 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB	3452752..3453402	Shewanella loihica PV-4	4921174
YP_001095040.1	CDS	ipk	NC_009092.1	3453389	3454243	D	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	3453389..3454243	Shewanella loihica PV-4	4921175
YP_001095041.1	CDS	Shew_2916	NC_009092.1	3454282	3455256	D	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase	3454282..3455256	Shewanella loihica PV-4	4921176
YP_001095042.1	CDS	Shew_2917	NC_009092.1	3455356	3455763	R	hypothetical protein	complement(3455356..3455763)	Shewanella loihica PV-4	4921177
YP_001095043.1	CDS	Shew_2918	NC_009092.1	3455776	3456282	R	hypothetical protein	complement(3455776..3456282)	Shewanella loihica PV-4	4921178
YP_001095044.1	CDS	Shew_2919	NC_009092.1	3457797	3458888	R	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD	complement(3457797..3458888)	Shewanella loihica PV-4	4924171
YP_001095045.1	CDS	Shew_2920	NC_009092.1	3458959	3459546	R	Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase	complement(3458959..3459546)	Shewanella loihica PV-4	4921180
YP_001095046.1	CDS	Shew_2921	NC_009092.1	3459650	3460843	R	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_1071 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	complement(3459650..3460843)	Shewanella loihica PV-4	4921181
YP_001095047.1	CDS	Shew_2922	NC_009092.1	3461042	3461344	D	KEGG: shm:Shewmr7_1070 hypothetical protein; hypothetical protein	3461042..3461344	Shewanella loihica PV-4	4921182
YP_001095048.1	CDS	Shew_2923	NC_009092.1	3461443	3462867	D	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase	3461443..3462867	Shewanella loihica PV-4	4921183
YP_001095049.1	CDS	Shew_2924	NC_009092.1	3463109	3464152	D	PFAM: PhoH family protein; KEGG: she:Shewmr4_1003 PhoH family protein; PhoH family protein	3463109..3464152	Shewanella loihica PV-4	4921184
YP_001095050.1	CDS	Shew_2925	NC_009092.1	3464142	3464615	D	PFAM: protein of unknown function UPF0054; KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease	3464142..3464615	Shewanella loihica PV-4	4921185
YP_001095051.1	CDS	Shew_2926	NC_009092.1	3464643	3465518	D	PFAM: CBS domain containing protein; transporter-associated region; KEGG: shm:Shewmr7_1066 CBS domain containing protein; hypothetical protein	3464643..3465518	Shewanella loihica PV-4	4921186
YP_001095052.1	CDS	lnt	NC_009092.1	3465545	3467158	D	Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase	3465545..3467158	Shewanella loihica PV-4	4922129
YP_001095053.1	CDS	Shew_2928	NC_009092.1	3467305	3467805	R	PFAM: protein of unknown function DUF1451; KEGG: shm:Shewmr7_1063 protein of unknown function DUF1451; hypothetical protein	complement(3467305..3467805)	Shewanella loihica PV-4	4922130
YP_001095054.1	CDS	leuS	NC_009092.1	3467927	3470518	D	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase	3467927..3470518	Shewanella loihica PV-4	4922131
YP_001095055.1	CDS	Shew_2930	NC_009092.1	3470587	3471081	D	PFAM: Rare lipoprotein B; KEGG: shm:Shewmr7_1061 rare lipoprotein B; rare lipoprotein B	3470587..3471081	Shewanella loihica PV-4	4922132
YP_001095056.1	CDS	Shew_2931	NC_009092.1	3471081	3472112	D	KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta	3471081..3472112	Shewanella loihica PV-4	4922133
YP_001095057.1	CDS	Shew_2932	NC_009092.1	3472124	3472765	D	KEGG: sfr:Sfri_0702 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase	3472124..3472765	Shewanella loihica PV-4	4922134
YP_001095058.1	CDS	Shew_2933	NC_009092.1	3472893	3473240	D	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: shm:Shewmr7_1058 iojap-like protein; iojap family protein	3472893..3473240	Shewanella loihica PV-4	4922135
YP_001095059.1	CDS	Shew_2934	NC_009092.1	3473240	3473710	D	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase	3473240..3473710	Shewanella loihica PV-4	4922136
YP_001095060.1	CDS	Shew_2935	NC_009092.1	3473788	3475671	D	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: shm:Shewmr7_1056 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase	3473788..3475671	Shewanella loihica PV-4	4922137
YP_001095061.1	CDS	Shew_2936	NC_009092.1	3475658	3476764	D	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: shm:Shewmr7_1055 rod shape-determining protein RodA; rod shape-determining protein RodA	3475658..3476764	Shewanella loihica PV-4	4922138
YP_001095062.1	CDS	Shew_2937	NC_009092.1	3476776	3477783	D	TIGRFAM: lytic murein transglycosylase B; KEGG: shm:Shewmr7_1054 lytic murein transglycosylase B; lytic murein transglycosylase B	3476776..3477783	Shewanella loihica PV-4	4922139
YP_001095063.1	CDS	Shew_2938	NC_009092.1	3477764	3478561	D	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: sdn:Sden_0852 rare lipoprotein A; rare lipoprotein A	3477764..3478561	Shewanella loihica PV-4	4922140
YP_001095064.1	CDS	Shew_2939	NC_009092.1	3478697	3479869	D	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: she:Shewmr4_0987 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase	3478697..3479869	Shewanella loihica PV-4	4922141
YP_001095065.1	CDS	Shew_2940	NC_009092.1	3480004	3480270	D	PFAM: protein of unknown function DUF493; KEGG: shm:Shewmr7_1051 protein of unknown function DUF493; hypothetical protein	3480004..3480270	Shewanella loihica PV-4	4922142
YP_001095066.1	CDS	lipB	NC_009092.1	3480360	3481016	D	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B	3480360..3481016	Shewanella loihica PV-4	4922143
YP_001095067.1	CDS	Shew_2942	NC_009092.1	3481018	3481983	D	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase	3481018..3481983	Shewanella loihica PV-4	4924079
YP_001095068.1	CDS	Shew_2943	NC_009092.1	3482088	3482537	R	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sdn:Sden_2855 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase	complement(3482088..3482537)	Shewanella loihica PV-4	4924080
YP_001095069.1	CDS	Shew_2944	NC_009092.1	3482515	3482838	R	hypothetical protein	complement(3482515..3482838)	Shewanella loihica PV-4	4924081
YP_001095070.1	CDS	Shew_2945	NC_009092.1	3490137	3490973	R	KEGG: shm:Shewmr7_3070 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase	complement(3490137..3490973)	Shewanella loihica PV-4	4924175
YP_001095071.1	CDS	Shew_2946	NC_009092.1	3491095	3491550	D	KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein	3491095..3491550	Shewanella loihica PV-4	4924083
YP_001095072.1	CDS	Shew_2947	NC_009092.1	3491700	3492017	R	KEGG: ppr:PBPRA1913 hypothetical protein; hypothetical protein	complement(3491700..3492017)	Shewanella loihica PV-4	4924084
YP_001095073.1	CDS	Shew_2948	NC_009092.1	3492164	3494737	R	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3072 ATPase AAA-2 domain protein; ATPase	complement(3492164..3494737)	Shewanella loihica PV-4	4924085
YP_001095074.1	CDS	Shew_2949	NC_009092.1	3494852	3495571	R	PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein	complement(3494852..3495571)	Shewanella loihica PV-4	4924086
YP_001095075.1	CDS	Shew_2950	NC_009092.1	3495571	3496542	R	KEGG: shm:Shewmr7_3074 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase	complement(3495571..3496542)	Shewanella loihica PV-4	4924087
YP_001095076.1	CDS	Shew_2951	NC_009092.1	3496666	3497424	D	KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein	3496666..3497424	Shewanella loihica PV-4	4924088
YP_001095077.1	CDS	Shew_2952	NC_009092.1	3498055	3499680	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3076 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	3498055..3499680	Shewanella loihica PV-4	4923660
YP_001095078.1	CDS	Shew_2953	NC_009092.1	3499682	3501262	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; CHASE4 domain protein; KEGG: sfr:Sfri_3981 diguanylate cyclase; diguanylate cyclase	complement(3499682..3501262)	Shewanella loihica PV-4	4924090
YP_001095079.1	CDS	Shew_2954	NC_009092.1	3501394	3503256	R	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_3174 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	complement(3501394..3503256)	Shewanella loihica PV-4	4924091
YP_001095080.1	CDS	Shew_2955	NC_009092.1	3503518	3504462	D	catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase	3503518..3504462	Shewanella loihica PV-4	4924092
YP_001095081.1	CDS	Shew_2956	NC_009092.1	3504734	3505306	D	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_0791 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor	3504734..3505306	Shewanella loihica PV-4	4924050
YP_001095082.1	CDS	Shew_2957	NC_009092.1	3505306	3505818	D	KEGG: she:Shewmr4_3176 hypothetical protein; hypothetical protein	3505306..3505818	Shewanella loihica PV-4	4924051
YP_001095083.1	CDS	Shew_2958	NC_009092.1	3505815	3506762	D	KEGG: she:Shewmr4_3177 hypothetical protein; hypothetical protein	3505815..3506762	Shewanella loihica PV-4	4924052
YP_001095084.1	CDS	Shew_2959	NC_009092.1	3506843	3507763	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4542 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(3506843..3507763)	Shewanella loihica PV-4	4924053
YP_001095085.1	CDS	Shew_2960	NC_009092.1	3508399	3513378	D	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin	3508399..3513378	Shewanella loihica PV-4	4924054
YP_001095086.1	CDS	Shew_2961	NC_009092.1	3513460	3513693	R	hypothetical protein	complement(3513460..3513693)	Shewanella loihica PV-4	4924055
YP_001095087.1	CDS	Shew_2962	NC_009092.1	3513984	3515672	R	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase	complement(3513984..3515672)	Shewanella loihica PV-4	4924056
YP_001095088.1	CDS	Shew_2963	NC_009092.1	3515883	3516347	R	PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein; hypothetical protein	complement(3515883..3516347)	Shewanella loihica PV-4	4924057
YP_001095089.1	CDS	Shew_2964	NC_009092.1	3516403	3517545	R	PFAM: beta-lactamase; KEGG: shm:Shewmr7_3266 beta-lactamase; beta-lactamase	complement(3516403..3517545)	Shewanella loihica PV-4	4924058
YP_001095090.1	CDS	Shew_2965	NC_009092.1	3517568	3518836	R	KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter	complement(3517568..3518836)	Shewanella loihica PV-4	4924059
YP_001095091.1	CDS	Shew_2966	NC_009092.1	3518956	3519486	R	PFAM: membrane-flanked domain protein; KEGG: sfr:Sfri_0836 membrane-flanked domain protein; membrane-flanked domain-containing protein	complement(3518956..3519486)	Shewanella loihica PV-4	4924060
YP_001095092.1	CDS	Shew_2967	NC_009092.1	3519716	3522289	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3184 TonB-dependent receptor; TonB-dependent receptor	3519716..3522289	Shewanella loihica PV-4	4924061
YP_001095093.1	CDS	Shew_2968	NC_009092.1	3522536	3523171	D	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: she:Shewmr4_3183 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein	3522536..3523171	Shewanella loihica PV-4	4924062
YP_001095094.1	CDS	Shew_2969	NC_009092.1	3523288	3523908	R	KEGG: pha:PSHAa2040 hypothetical protein; hypothetical protein	complement(3523288..3523908)	Shewanella loihica PV-4	4924063
YP_001095095.1	CDS	Shew_2970	NC_009092.1	3524043	3524543	R	KEGG: shm:Shewmr7_0784 hypothetical protein; hypothetical protein	complement(3524043..3524543)	Shewanella loihica PV-4	4924064
YP_001095096.1	CDS	Shew_2971	NC_009092.1	3524580	3524981	R	KEGG: she:Shewmr4_3181 hypothetical protein; hypothetical protein	complement(3524580..3524981)	Shewanella loihica PV-4	4923812
YP_001095097.1	CDS	Shew_2972	NC_009092.1	3525343	3526125	R	KEGG: son:SO3846 hypothetical protein; hypothetical protein	complement(3525343..3526125)	Shewanella loihica PV-4	4923813
YP_001095098.1	CDS	Shew_2973	NC_009092.1	3526276	3528360	R	PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_3179 endothelin-converting enzyme 1; endothelin-converting protein 1	complement(3526276..3528360)	Shewanella loihica PV-4	4923814
YP_001095099.1	CDS	Shew_2974	NC_009092.1	3528561	3529103	R	PFAM: transferase hexapeptide repeat containing protein; KEGG: vpa:VPA1135 putative acetyltransferase; hexapaptide repeat-containing transferase	complement(3528561..3529103)	Shewanella loihica PV-4	4923815
YP_001095100.1	CDS	Shew_2975	NC_009092.1	3529285	3529977	D	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0788 pseudouridine synthase, Rsu; pseudouridine synthase	3529285..3529977	Shewanella loihica PV-4	4923816
YP_001095101.1	CDS	Shew_2976	NC_009092.1	3529992	3530429	R	KEGG: shm:Shewmr7_0775 hypothetical protein; hypothetical protein	complement(3529992..3530429)	Shewanella loihica PV-4	4923817
YP_001095102.1	CDS	Shew_2977	NC_009092.1	3530664	3532616	D	KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase	3530664..3532616	Shewanella loihica PV-4	4923818
YP_001095103.1	CDS	Shew_2978	NC_009092.1	3532681	3533427	R	SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3860 hypothetical protein; extracellular solute-binding protein	complement(3532681..3533427)	Shewanella loihica PV-4	4923819
YP_001095104.1	CDS	Shew_2979	NC_009092.1	3533864	3535027	D	TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: shm:Shewmr7_0771 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster binding protein	3533864..3535027	Shewanella loihica PV-4	4923820
YP_001095105.1	CDS	Shew_2980	NC_009092.1	3535238	3535441	R	PFAM: protein of unknown function DUF1458; KEGG: sfr:Sfri_0829 protein of unknown function DUF1458; hypothetical protein	complement(3535238..3535441)	Shewanella loihica PV-4	4923821
YP_001095106.1	CDS	Shew_2981	NC_009092.1	3535567	3537531	R	PFAM: beta-lactamase domain protein; KEGG: son:SO0357 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein	complement(3535567..3537531)	Shewanella loihica PV-4	4923822
YP_001095107.1	CDS	Shew_2982	NC_009092.1	3537658	3539376	R	PFAM: glucose-methanol-choline oxidoreductase; KEGG: cps:CPS_0109 hypothetical protein; glucose-methanol-choline oxidoreductase	complement(3537658..3539376)	Shewanella loihica PV-4	4923823
YP_001095108.1	CDS	Shew_2983	NC_009092.1	3539414	3540067	R	KEGG: cps:CPS_0110 Tat (twin-arginine translocation) pathway signal sequence domain protein; Tat pathway signal sequence domain-containing protein	complement(3539414..3540067)	Shewanella loihica PV-4	4923824
YP_001095109.1	CDS	Shew_2984	NC_009092.1	3540273	3541823	D	PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger, CDGSH-type domain protein; KEGG: cps:CPS_1903 glutamate synthase domain protein; ferredoxin-dependent glutamate synthase	3540273..3541823	Shewanella loihica PV-4	4923825
YP_001095110.1	CDS	Shew_2985	NC_009092.1	3542173	3543687	D	PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein; Sel1 domain-containing protein	3542173..3543687	Shewanella loihica PV-4	4923786
YP_001095111.1	CDS	Shew_2986	NC_009092.1	3543846	3546125	R	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase	complement(3543846..3546125)	Shewanella loihica PV-4	4923787
YP_001095112.1	CDS	Shew_2987	NC_009092.1	3546326	3547225	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0653 transcriptional regulator, LysR family; LysR family transcriptional regulator	3546326..3547225	Shewanella loihica PV-4	4923788
YP_001095113.1	CDS	Shew_2988	NC_009092.1	3547305	3548030	R	PFAM: HDOD; KEGG: shm:Shewmr7_0652 putative signal transduction protein; putative signal transduction protein	complement(3547305..3548030)	Shewanella loihica PV-4	4923789
YP_001095114.1	CDS	Shew_2989	NC_009092.1	3548272	3548883	R	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: aeh:Mlg_0488 lipolytic enzyme, G-D-S-L family; GDSL family lipase	complement(3548272..3548883)	Shewanella loihica PV-4	4923790
YP_001095115.1	CDS	Shew_2990	NC_009092.1	3548977	3550947	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent receptor	complement(3548977..3550947)	Shewanella loihica PV-4	4923791
YP_001095116.1	CDS	Shew_2991	NC_009092.1	3551485	3551835	R	PFAM: protein of unknown function DUF805; KEGG: sfr:Sfri_4038 protein of unknown function DUF805; hypothetical protein	complement(3551485..3551835)	Shewanella loihica PV-4	4923792
YP_001095117.1	CDS	Shew_2992	NC_009092.1	3551977	3553278	R	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sfr:Sfri_0801 amidohydrolase; amidohydrolase	complement(3551977..3553278)	Shewanella loihica PV-4	4923793
YP_001095118.1	CDS	Shew_2993	NC_009092.1	3553467	3554120	R	KEGG: she:Shewmr4_3303 hypothetical protein; hypothetical protein	complement(3553467..3554120)	Shewanella loihica PV-4	4923794
YP_001095119.1	CDS	Shew_2994	NC_009092.1	3554374	3554748	D	PFAM: Penicillinase repressor; KEGG: sfr:Sfri_3585 transcriptional repressor, CopY family protein; CopY family transcriptional regulator	3554374..3554748	Shewanella loihica PV-4	4923795
YP_001095120.1	CDS	Shew_2995	NC_009092.1	3554748	3556001	D	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56, BlaR1; KEGG: sfr:Sfri_3584 TonB family protein; TonB family protein	3554748..3556001	Shewanella loihica PV-4	4923796
YP_001095121.1	CDS	Shew_2996	NC_009092.1	3556266	3557951	D	KEGG: cps:CPS_0549 hypothetical protein; hypothetical protein	3556266..3557951	Shewanella loihica PV-4	4923797
YP_001095122.1	CDS	Shew_2997	NC_009092.1	3557941	3558597	D	KEGG: cps:CPS_0544 hypothetical protein; acetyltransferase-like protein	3557941..3558597	Shewanella loihica PV-4	4923798
YP_001095123.1	CDS	Shew_2998	NC_009092.1	3558692	3559504	D	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdn:Sden_0949 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase	3558692..3559504	Shewanella loihica PV-4	4923799
YP_001095124.1	CDS	Shew_2999	NC_009092.1	3559546	3559812	D	KEGG: cps:CPS_0547 hypothetical protein; hypothetical protein	3559546..3559812	Shewanella loihica PV-4	4923800
YP_001095125.1	CDS	Shew_3000	NC_009092.1	3559832	3561589	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_0546 GGDEF domain protein; diguanylate cyclase	3559832..3561589	Shewanella loihica PV-4	4923405
YP_001095126.1	CDS	Shew_3001	NC_009092.1	3561763	3563940	D	SMART: extracellular solute-binding protein, family 3; KEGG: cps:CPS_4167 sodium:dicarboxylate symporter family/bacterial extracellular solute-binding family 3 protein; extracellular solute-binding protein	3561763..3563940	Shewanella loihica PV-4	4923406
YP_001095127.1	CDS	Shew_3002	NC_009092.1	3563943	3564755	R	KEGG: she:Shewmr4_2079 hypothetical protein; hypothetical protein	complement(3563943..3564755)	Shewanella loihica PV-4	4923407
YP_001095128.1	CDS	fadE	NC_009092.1	3564950	3567184	R	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase	complement(3564950..3567184)	Shewanella loihica PV-4	4923408
YP_001095129.1	CDS	Shew_3004	NC_009092.1	3567633	3568376	D	PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: shm:Shewmr7_2809 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein	3567633..3568376	Shewanella loihica PV-4	4923409
YP_001095130.1	CDS	Shew_3005	NC_009092.1	3568387	3569775	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_2810 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	3568387..3569775	Shewanella loihica PV-4	4923410
YP_001095131.1	CDS	Shew_3006	NC_009092.1	3569777	3570346	D	KEGG: son:SO1518 hypothetical protein; hypothetical protein	3569777..3570346	Shewanella loihica PV-4	4923411
YP_001095132.1	CDS	Shew_3007	NC_009092.1	3570632	3571525	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_1855 transcriptional regulator, LysR family protein; LysR family transcriptional regulator	complement(3570632..3571525)	Shewanella loihica PV-4	4923412
YP_001095133.1	CDS	Shew_3008	NC_009092.1	3571739	3572017	D	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: par:Psyc_0857 peptidylprolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	3571739..3572017	Shewanella loihica PV-4	4923413
YP_001095134.1	CDS	Shew_3009	NC_009092.1	3572454	3573467	R	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein	complement(3572454..3573467)	Shewanella loihica PV-4	4923414
YP_001095135.1	CDS	Shew_3010	NC_009092.1	3573906	3574649	D	KEGG: ppr:PBPRB0920 hypothetical protein; hypothetical protein	3573906..3574649	Shewanella loihica PV-4	4923415
YP_001095136.1	CDS	Shew_3011	NC_009092.1	3574936	3576291	D	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: noc:Noc_1840 divalent cation transporter; magnesium transporter	3574936..3576291	Shewanella loihica PV-4	4923416
YP_001095137.1	CDS	Shew_3012	NC_009092.1	3576298	3577191	R	PFAM: MscS Mechanosensitive ion channel; KEGG: sdn:Sden_1606 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS	complement(3576298..3577191)	Shewanella loihica PV-4	4923417
YP_001095138.1	CDS	Shew_3013	NC_009092.1	3577976	3579472	D	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sfr:Sfri_0764 sodium/proline symporter; sodium/proline symporter	3577976..3579472	Shewanella loihica PV-4	4923418
YP_001095139.1	CDS	Shew_3014	NC_009092.1	3579485	3580585	D	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase	3579485..3580585	Shewanella loihica PV-4	4923065
YP_001095140.1	CDS	Shew_3015	NC_009092.1	3580588	3581835	D	TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: shm:Shewmr7_3942 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase	3580588..3581835	Shewanella loihica PV-4	4923066
YP_001095141.1	CDS	Shew_3016	NC_009092.1	3581922	3582716	D	KEGG: sfr:Sfri_0761 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase	3581922..3582716	Shewanella loihica PV-4	4923067
YP_001095142.1	CDS	Shew_3017	NC_009092.1	3582796	3584091	R	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: she:Shewmr4_3310 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase	complement(3582796..3584091)	Shewanella loihica PV-4	4923068
YP_001095143.1	CDS	Shew_3018	NC_009092.1	3584161	3584949	R	PFAM: alpha/beta hydrolase fold; KEGG: sfr:Sfri_0775 alpha/beta hydrolase fold; alpha/beta hydrolase	complement(3584161..3584949)	Shewanella loihica PV-4	4923069
YP_001095144.1	CDS	Shew_3019	NC_009092.1	3584946	3585968	R	KEGG: sfr:Sfri_0774 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein	complement(3584946..3585968)	Shewanella loihica PV-4	4923070
YP_001095145.1	CDS	Shew_3020	NC_009092.1	3586280	3586807	D	KEGG: pfo:Pfl_4744 hypothetical protein; hypothetical protein	3586280..3586807	Shewanella loihica PV-4	4923071
YP_001095146.1	CDS	Shew_3021	NC_009092.1	3586876	3588537	R	PFAM: peptidase domain protein; Endonuclease I; KEGG: sdn:Sden_3289 endonuclease I; endonuclease I	complement(3586876..3588537)	Shewanella loihica PV-4	4923072
YP_001095147.1	CDS	Shew_3022	NC_009092.1	3588794	3589474	R	KEGG: son:SO2798 hypothetical protein; hypothetical protein	complement(3588794..3589474)	Shewanella loihica PV-4	4923073
YP_001095148.1	CDS	Shew_3023	NC_009092.1	3589718	3590806	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_0758 diguanylate cyclase; diguanylate cyclase	3589718..3590806	Shewanella loihica PV-4	4923074
YP_001095149.1	CDS	Shew_3024	NC_009092.1	3590943	3592613	D	PFAM: Amidohydrolase 3; KEGG: sdn:Sden_0948 amidohydrolase 3; amidohydrolase 3	3590943..3592613	Shewanella loihica PV-4	4923075
YP_001095150.1	CDS	Shew_3025	NC_009092.1	3592669	3594180	R	KEGG: she:Shewmr4_3207 hypothetical protein; hypothetical protein	complement(3592669..3594180)	Shewanella loihica PV-4	4923076
YP_001095151.1	CDS	Shew_3026	NC_009092.1	3594180	3595832	R	KEGG: she:Shewmr4_3206 hypothetical protein; hypothetical protein	complement(3594180..3595832)	Shewanella loihica PV-4	4923077
YP_001095152.1	CDS	Shew_3027	NC_009092.1	3596082	3596381	D	KEGG: tbd:Tbd_1307 hypothetical protein; hypothetical protein	3596082..3596381	Shewanella loihica PV-4	4923078
YP_001095153.1	CDS	Shew_3028	NC_009092.1	3597044	3598489	D	PFAM: phospholipase D/Transphosphatidylase; KEGG: sdn:Sden_1075 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase	3597044..3598489	Shewanella loihica PV-4	4923079
YP_001095154.1	CDS	Shew_3029	NC_009092.1	3598555	3599025	R	PFAM: protein of unknown function DUF985; KEGG: she:Shewmr4_3317 protein of unknown function DUF985; hypothetical protein	complement(3598555..3599025)	Shewanella loihica PV-4	4923010
YP_001095155.1	CDS	Shew_3030	NC_009092.1	3599254	3599520	R	KEGG: sfr:Sfri_0741 hypothetical protein; hypothetical protein	complement(3599254..3599520)	Shewanella loihica PV-4	4923011
YP_001095156.1	CDS	Shew_3031	NC_009092.1	3599732	3601114	R	PFAM: phosphoesterase, PA-phosphatase related; KEGG: ppr:PBPRB1965 putative PAP2 family protein; PA-phosphatase-like phosphoesterase	complement(3599732..3601114)	Shewanella loihica PV-4	4923012
YP_001095157.1	CDS	Shew_3032	NC_009092.1	3601300	3601785	D	hypothetical protein	3601300..3601785	Shewanella loihica PV-4	4923013
YP_001095158.1	CDS	Shew_3033	NC_009092.1	3601926	3604112	R	TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: she:Shewmr4_3321 uncharacterized domain; hypothetical protein	complement(3601926..3604112)	Shewanella loihica PV-4	4923014
YP_001095159.1	CDS	Shew_3034	NC_009092.1	3604337	3605905	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tcx:Tcr_0397 diguanylate cyclase (GGDEF domain); diguanylate cyclase	complement(3604337..3605905)	Shewanella loihica PV-4	4923015
YP_001095160.1	CDS	Shew_3035	NC_009092.1	3606127	3606375	R	KEGG: son:SO0793 hypothetical protein; hypothetical protein	complement(3606127..3606375)	Shewanella loihica PV-4	4923016
YP_001095161.1	CDS	Shew_3036	NC_009092.1	3606539	3607366	R	KEGG: sdn:Sden_3769 hypothetical protein; hypothetical protein	complement(3606539..3607366)	Shewanella loihica PV-4	4923017
YP_001095162.1	CDS	Shew_3037	NC_009092.1	3607351	3608304	R	TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: sdn:Sden_3770 S6 modification enzyme RimK; alpha-L-glutamate ligase	complement(3607351..3608304)	Shewanella loihica PV-4	4923018
YP_001095163.1	CDS	Shew_3038	NC_009092.1	3608511	3610283	D	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: sdn:Sden_3771 asparagine synthase, glutamine-hydrolyzing; asparagine synthase	3608511..3610283	Shewanella loihica PV-4	4923019
YP_001095164.1	CDS	Shew_3039	NC_009092.1	3610313	3610882	R	PFAM: protein of unknown function DUF159; KEGG: sdn:Sden_3234 protein of unknown function DUF159; hypothetical protein	complement(3610313..3610882)	Shewanella loihica PV-4	4923020
YP_001095165.1	CDS	Shew_3040	NC_009092.1	3611450	3613165	D	hypothetical protein	3611450..3613165	Shewanella loihica PV-4	4923021
YP_001095166.1	CDS	Shew_3041	NC_009092.1	3613158	3614087	D	hypothetical protein	3613158..3614087	Shewanella loihica PV-4	4923022
YP_001095167.1	CDS	Shew_3042	NC_009092.1	3614166	3614552	R	KEGG: shm:Shewmr7_0629 hypothetical protein; hypothetical protein	complement(3614166..3614552)	Shewanella loihica PV-4	4923023
YP_001095168.1	CDS	Shew_3043	NC_009092.1	3614743	3614991	D	KEGG: cps:CPS_2512 hypothetical protein; hypothetical protein	3614743..3614991	Shewanella loihica PV-4	4922782
YP_001095169.1	CDS	Shew_3044	NC_009092.1	3615299	3617365	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein; methyl-accepting chemotaxis sensory transducer	3615299..3617365	Shewanella loihica PV-4	4922783
YP_001095170.1	CDS	Shew_3045	NC_009092.1	3617527	3618633	D	KEGG: son:SO3714 sugar-binding protein, putative; sugar-binding protein	3617527..3618633	Shewanella loihica PV-4	4922784
YP_001095171.1	CDS	Shew_3046	NC_009092.1	3618821	3619141	D	PFAM: Carboxymuconolactone decarboxylase; KEGG: ypn:YPN_1479 decarboxylase; carboxymuconolactone decarboxylase	3618821..3619141	Shewanella loihica PV-4	4922785
YP_001095172.1	CDS	Shew_3047	NC_009092.1	3619428	3620495	D	KEGG: rso:RSc0206 hypothetical signal peptide protein; putative signal peptide protein	3619428..3620495	Shewanella loihica PV-4	4922786
YP_001095173.1	CDS	Shew_3048	NC_009092.1	3620607	3621653	D	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein; alcohol dehydrogenase	3620607..3621653	Shewanella loihica PV-4	4922787
YP_001095174.1	CDS	Shew_3049	NC_009092.1	3621793	3623010	R	PFAM: major facilitator superfamily MFS_1; KEGG: mmp:MMP0797 general substrate transporter; major facilitator superfamily transporter	complement(3621793..3623010)	Shewanella loihica PV-4	4922788
YP_001095175.1	CDS	Shew_3050	NC_009092.1	3623064	3623420	R	KEGG: rso:RSc0630 hypothetical protein; hypothetical protein	complement(3623064..3623420)	Shewanella loihica PV-4	4922789
YP_001095176.1	CDS	Shew_3051	NC_009092.1	3623519	3624007	R	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase; cupin	complement(3623519..3624007)	Shewanella loihica PV-4	4922790
YP_001095177.1	CDS	Shew_3052	NC_009092.1	3624222	3625118	D	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator	3624222..3625118	Shewanella loihica PV-4	4922791
YP_001095178.1	CDS	Shew_3053	NC_009092.1	3625140	3626402	R	PFAM: beta-lactamase; KEGG: bur:Bcep18194_C7182 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase	complement(3625140..3626402)	Shewanella loihica PV-4	4922792
YP_001095179.1	CDS	Shew_3054	NC_009092.1	3626609	3627187	D	KEGG: abo:ABO_1660 hypothetical protein; hypothetical protein	3626609..3627187	Shewanella loihica PV-4	4922793
YP_001095180.1	CDS	Shew_3055	NC_009092.1	3627443	3627892	D	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sfr:Sfri_3571 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase	3627443..3627892	Shewanella loihica PV-4	4922794
YP_001095181.1	CDS	Shew_3056	NC_009092.1	3628033	3628605	D	KEGG: ilo:IL1589 hypothetical protein; hypothetical protein	3628033..3628605	Shewanella loihica PV-4	4922795
YP_001095182.1	CDS	Shew_3057	NC_009092.1	3628635	3628967	D	hypothetical protein	3628635..3628967	Shewanella loihica PV-4	4922796
YP_001095183.1	CDS	Shew_3058	NC_009092.1	3629157	3630353	D	PFAM: beta-lactamase; KEGG: mxa:MXAN_6409 putative beta-lactamase; beta-lactamase	3629157..3630353	Shewanella loihica PV-4	4922658
YP_001095184.1	CDS	Shew_3059	NC_009092.1	3630516	3630911	R	KEGG: cps:CPS_4414 hypothetical protein; hypothetical protein	complement(3630516..3630911)	Shewanella loihica PV-4	4922659
YP_001095185.1	CDS	Shew_3060	NC_009092.1	3631146	3633872	D	KEGG: she:Shewmr4_3416 hypothetical protein; hypothetical protein	3631146..3633872	Shewanella loihica PV-4	4922660
YP_001095186.1	CDS	Shew_3061	NC_009092.1	3634107	3634916	D	hypothetical protein	3634107..3634916	Shewanella loihica PV-4	4922661
YP_001095187.1	CDS	Shew_3062	NC_009092.1	3635485	3638373	R	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase	complement(3635485..3638373)	Shewanella loihica PV-4	4922662
YP_001095188.1	CDS	Shew_3063	NC_009092.1	3638542	3638931	R	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H	complement(3638542..3638931)	Shewanella loihica PV-4	4922663
YP_001095189.1	CDS	gcvT	NC_009092.1	3639125	3640219	R	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T	complement(3639125..3640219)	Shewanella loihica PV-4	4922664
YP_001095190.1	CDS	Shew_3065	NC_009092.1	3640696	3641904	R	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	complement(3640696..3641904)	Shewanella loihica PV-4	4922665
YP_001095191.1	CDS	Shew_3066	NC_009092.1	3641916	3643157	R	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: she:Shewmr4_3333 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase	complement(3641916..3643157)	Shewanella loihica PV-4	4922666
YP_001095192.1	CDS	Shew_3067	NC_009092.1	3643218	3643790	R	TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shm:Shewmr7_0619 YecA family protein; yecA family protein	complement(3643218..3643790)	Shewanella loihica PV-4	4922667
YP_001095193.1	CDS	Shew_3068	NC_009092.1	3644074	3644382	D	PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein	3644074..3644382	Shewanella loihica PV-4	4922668
YP_001095194.1	CDS	Shew_3069	NC_009092.1	3644976	3645587	D	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: shm:Shewmr7_0617 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase	3644976..3645587	Shewanella loihica PV-4	4922669
YP_001095195.1	CDS	Shew_3070	NC_009092.1	3645607	3646467	R	SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3481 hypothetical protein; extracellular solute-binding protein	complement(3645607..3646467)	Shewanella loihica PV-4	4922670
YP_001095196.1	CDS	Shew_3071	NC_009092.1	3646825	3647334	D	KEGG: son:SO3163 lipoprotein; lipoprotein	3646825..3647334	Shewanella loihica PV-4	4922671
YP_001095197.1	CDS	Shew_3072	NC_009092.1	3647350	3647943	R	KEGG: reu:Reut_A0537 cold-shock protein, DNA-binding; cold-shock protein, DNA-binding	complement(3647350..3647943)	Shewanella loihica PV-4	4922315
YP_001095198.1	CDS	Shew_3073	NC_009092.1	3648126	3648794	R	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase	complement(3648126..3648794)	Shewanella loihica PV-4	4922316
YP_001095199.1	CDS	Shew_3074	NC_009092.1	3648928	3649464	D	KEGG: son:SO3655 pilin, putative; pilin	3648928..3649464	Shewanella loihica PV-4	4922317
YP_001095200.1	CDS	Shew_3075	NC_009092.1	3649584	3649901	D	KEGG: son:SO3656 hypothetical protein; hypothetical protein	3649584..3649901	Shewanella loihica PV-4	4922318
YP_001095201.1	CDS	Shew_3076	NC_009092.1	3650010	3650624	R	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_3132 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	complement(3650010..3650624)	Shewanella loihica PV-4	4922319
YP_001095202.1	CDS	Shew_3077	NC_009092.1	3650646	3652247	R	PFAM: peptidase S10, serine carboxypeptidase; KEGG: she:Shewmr4_0889 peptidase S10, serine carboxypeptidase; peptidase S10, serine carboxypeptidase	complement(3650646..3652247)	Shewanella loihica PV-4	4922320
YP_001095203.1	CDS	Shew_3078	NC_009092.1	3652393	3653940	R	PFAM: Ppx/GppA phosphatase; KEGG: she:Shewmr4_2208 Ppx/GppA phosphatase; Ppx/GppA phosphatase	complement(3652393..3653940)	Shewanella loihica PV-4	4922321
YP_001095204.1	CDS	Shew_3079	NC_009092.1	3653958	3656132	R	PFAM: Polyphosphate kinase; KEGG: shm:Shewmr7_2284 polyphosphate kinase; polyphosphate kinase	complement(3653958..3656132)	Shewanella loihica PV-4	4922322
YP_001095205.1	CDS	Shew_3080	NC_009092.1	3656458	3656997	D	KEGG: sfr:Sfri_3095 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein	3656458..3656997	Shewanella loihica PV-4	4922323
YP_001095206.1	CDS	Shew_3081	NC_009092.1	3657178	3659751	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3096 TonB-dependent receptor; TonB-dependent receptor	complement(3657178..3659751)	Shewanella loihica PV-4	4922324
YP_001095207.1	CDS	Shew_3082	NC_009092.1	3660367	3661815	D	KEGG: she:Shewmr4_0887 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; sigma-54 dependent trancsriptional regulator	3660367..3661815	Shewanella loihica PV-4	4922325
YP_001095208.1	CDS	Shew_3083	NC_009092.1	3661997	3663439	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3136 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	3661997..3663439	Shewanella loihica PV-4	4922326
YP_001095209.1	CDS	Shew_3084	NC_009092.1	3663756	3665351	D	PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase	3663756..3665351	Shewanella loihica PV-4	4922327
YP_001095210.1	CDS	Shew_3085	NC_009092.1	3665501	3666013	R	PFAM: Lipocalin family protein; KEGG: pat:Patl_0580 lipocalin-like; lipocalin family protein	complement(3665501..3666013)	Shewanella loihica PV-4	4922328
YP_001095211.1	CDS	Shew_3086	NC_009092.1	3666372	3667352	D	KEGG: sfr:Sfri_3610 hypothetical protein; hypothetical protein	3666372..3667352	Shewanella loihica PV-4	4922329
YP_001095212.1	CDS	Shew_3087	NC_009092.1	3667414	3669276	R	KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter-related protein; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein	complement(3667414..3669276)	Shewanella loihica PV-4	4922251
YP_001095213.1	CDS	Shew_3088	NC_009092.1	3669386	3670696	R	PFAM: short chain fatty acid transporter; KEGG: shm:Shewmr7_2886 short chain fatty acid transporter; short chain fatty acid transporter	complement(3669386..3670696)	Shewanella loihica PV-4	4922252
YP_001095214.1	CDS	Shew_3089	NC_009092.1	3670884	3671207	D	KEGG: cps:CPS_1442 hypothetical protein; hypothetical protein	3670884..3671207	Shewanella loihica PV-4	4922253
YP_001095215.1	CDS	Shew_3090	NC_009092.1	3671271	3671585	R	KEGG: sfr:Sfri_0942 hypothetical protein; hypothetical protein	complement(3671271..3671585)	Shewanella loihica PV-4	4922254
YP_001095216.1	CDS	Shew_3091	NC_009092.1	3671697	3672320	D	PFAM: membrane-flanked domain protein; KEGG: sfr:Sfri_0941 membrane-flanked domain protein; membrane-flanked domain-containing protein	3671697..3672320	Shewanella loihica PV-4	4922255
YP_001095217.1	CDS	Shew_3092	NC_009092.1	3672324	3673892	D	PFAM: membrane-flanked domain protein; KEGG: sfr:Sfri_0940 membrane-flanked domain protein; membrane-flanked domain-containing protein	3672324..3673892	Shewanella loihica PV-4	4922256
YP_001095218.1	CDS	Shew_3093	NC_009092.1	3673945	3674499	D	PFAM: protein of unknown function DUF924; KEGG: she:Shewmr4_0877 protein of unknown function DUF924; hypothetical protein	3673945..3674499	Shewanella loihica PV-4	4922257
YP_001095219.1	CDS	Shew_3094	NC_009092.1	3674543	3675304	D	PFAM: protein of unknown function DUF81; KEGG: ppr:PBPRA2195 hypothetical protein; hypothetical protein	3674543..3675304	Shewanella loihica PV-4	4922258
YP_001095220.1	CDS	Shew_3095	NC_009092.1	3675334	3675723	R	hypothetical protein	complement(3675334..3675723)	Shewanella loihica PV-4	4922259
YP_001095221.1	CDS	Shew_3096	NC_009092.1	3675728	3676711	R	KEGG: gvi:gll1663 metalloprotease MEP1 homolog; metalloprotease MEP1-like protein	complement(3675728..3676711)	Shewanella loihica PV-4	4922260
YP_001095222.1	CDS	Shew_3097	NC_009092.1	3676984	3679155	D	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3717 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor	3676984..3679155	Shewanella loihica PV-4	4922261
YP_001095223.1	CDS	Shew_3098	NC_009092.1	3679301	3680341	R	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ppr:PBPRB1366 putative NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase	complement(3679301..3680341)	Shewanella loihica PV-4	4922262
YP_001095224.1	CDS	Shew_3099	NC_009092.1	3680473	3681051	D	PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_1157 transcriptional regulator, TetR family; TetR family transcriptional regulator	3680473..3681051	Shewanella loihica PV-4	4922263
YP_001095225.1	CDS	Shew_3100	NC_009092.1	3681053	3681496	R	PFAM: UspA domain protein; KEGG: sfr:Sfri_0938 UspA domain protein; UspA domain-containing protein	complement(3681053..3681496)	Shewanella loihica PV-4	4922264
YP_001095226.1	CDS	Shew_3101	NC_009092.1	3681687	3682118	R	PFAM: UspA domain protein; KEGG: sfr:Sfri_0938 UspA domain protein; UspA domain-containing protein	complement(3681687..3682118)	Shewanella loihica PV-4	4922206
YP_001095227.1	CDS	Shew_3102	NC_009092.1	3682413	3682790	R	KEGG: she:Shewmr4_0873 hypothetical protein; hypothetical protein	complement(3682413..3682790)	Shewanella loihica PV-4	4922207
YP_001095228.1	CDS	Shew_3103	NC_009092.1	3683054	3684478	D	PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase	3683054..3684478	Shewanella loihica PV-4	4922208
YP_001095229.1	CDS	Shew_3104	NC_009092.1	3684492	3685076	D	PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator	3684492..3685076	Shewanella loihica PV-4	4922209
YP_001095230.1	CDS	Shew_3105	NC_009092.1	3685078	3685959	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pat:Patl_2651 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(3685078..3685959)	Shewanella loihica PV-4	4922210
YP_001095231.1	CDS	Shew_3106	NC_009092.1	3686070	3686741	D	PFAM: ThiJ/PfpI domain protein; KEGG: pat:Patl_2650 ThiJ/PfpI; ThiJ/PfpI domain-containing protein	3686070..3686741	Shewanella loihica PV-4	4922211
YP_001095232.1	CDS	Shew_3107	NC_009092.1	3686903	3688060	D	PFAM: peptidase M19, renal dipeptidase; KEGG: shm:Shewmr7_0834 twin-arginine translocation pathway signal; peptidase M19	3686903..3688060	Shewanella loihica PV-4	4922212
YP_001095233.1	CDS	Shew_3108	NC_009092.1	3689318	3689875	R	hypothetical protein	complement(3689318..3689875)	Shewanella loihica PV-4	4922213
YP_001095234.1	CDS	Shew_3109	NC_009092.1	3690445	3691314	D	PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_1975 protein of unknown function DUF6, transmembrane; hypothetical protein	3690445..3691314	Shewanella loihica PV-4	4922214
YP_001095235.1	CDS	Shew_3110	NC_009092.1	3691659	3691868	R	hypothetical protein	complement(3691659..3691868)	Shewanella loihica PV-4	4922215
YP_001095236.1	CDS	Shew_3111	NC_009092.1	3691980	3692801	R	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ppr:PBPRB1065 hypothetical oxidoreductase protein; NAD-dependent epimerase/dehydratase	complement(3691980..3692801)	Shewanella loihica PV-4	4922216
YP_001095237.1	CDS	Shew_3112	NC_009092.1	3693260	3695050	R	KEGG: sfr:Sfri_3690 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c	complement(3693260..3695050)	Shewanella loihica PV-4	4922217
YP_001095238.1	CDS	Shew_3113	NC_009092.1	3695449	3697413	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: sfr:Sfri_3689 periplasmic sensor signal transduction histidine kinase; histidine kinase	3695449..3697413	Shewanella loihica PV-4	4922218
YP_001095239.1	CDS	Shew_3114	NC_009092.1	3697423	3698811	D	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_3688 two component, sigma54 specific, transcriptional regulator, fis family protein; two component, sigma54 specific, Fis family transcriptional regulator	3697423..3698811	Shewanella loihica PV-4	4922219
YP_001095240.1	CDS	Shew_3115	NC_009092.1	3698873	3700186	R	PFAM: sodium:dicarboxylate symporter; KEGG: sdn:Sden_2987 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter	complement(3698873..3700186)	Shewanella loihica PV-4	4922220
YP_001095241.1	CDS	Shew_3116	NC_009092.1	3700723	3701943	R	KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein	complement(3700723..3701943)	Shewanella loihica PV-4	4922079
YP_001095242.1	CDS	Shew_3117	NC_009092.1	3701945	3702598	R	KEGG: sfr:Sfri_0526 hypothetical protein; hypothetical protein	complement(3701945..3702598)	Shewanella loihica PV-4	4922080
YP_001095243.1	CDS	Shew_3118	NC_009092.1	3702599	3706270	R	KEGG: she:Shewmr4_0638 hypothetical protein; hypothetical protein	complement(3702599..3706270)	Shewanella loihica PV-4	4922081
YP_001095244.1	CDS	Shew_3119	NC_009092.1	3706698	3707411	R	KEGG: son:SO4011 hypothetical protein; hypothetical protein	complement(3706698..3707411)	Shewanella loihica PV-4	4922082
YP_001095245.1	CDS	Shew_3120	NC_009092.1	3707988	3709160	D	PFAM: phosphate-selective porin O and P; KEGG: sdn:Sden_0638 phosphate-selective porin O and P; phosphate-selective porin O and P	3707988..3709160	Shewanella loihica PV-4	4922083
YP_001095246.1	CDS	Shew_3121	NC_009092.1	3709313	3709828	D	KEGG: sdn:Sden_0639 FMN-binding; FMN-binding domain-containing protein	3709313..3709828	Shewanella loihica PV-4	4922084
YP_001095247.1	CDS	Shew_3122	NC_009092.1	3709997	3710797	D	PFAM: PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0640 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein	3709997..3710797	Shewanella loihica PV-4	4922085
YP_001095248.1	CDS	Shew_3123	NC_009092.1	3710930	3713299	R	KEGG: shm:Shewmr7_3406 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B	complement(3710930..3713299)	Shewanella loihica PV-4	4922086
YP_001095249.1	CDS	Shew_3124	NC_009092.1	3713327	3715858	R	KEGG: shm:Shewmr7_3407 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB	complement(3713327..3715858)	Shewanella loihica PV-4	4922087
YP_001095250.1	CDS	Shew_3125	NC_009092.1	3715952	3718147	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3409 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase	complement(3715952..3718147)	Shewanella loihica PV-4	4922088
YP_001095251.1	CDS	Shew_3126	NC_009092.1	3718384	3718914	D	TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: shm:Shewmr7_3410 2'-5' RNA ligase; 2'-5' RNA ligase	3718384..3718914	Shewanella loihica PV-4	4922089
YP_001095252.1	CDS	Shew_3127	NC_009092.1	3718956	3720233	R	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B	complement(3718956..3720233)	Shewanella loihica PV-4	4922090
YP_001095253.1	CDS	Shew_3128	NC_009092.1	3720572	3721276	D	Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A	3720572..3721276	Shewanella loihica PV-4	4922091
YP_001095254.1	CDS	Shew_3129	NC_009092.1	3721436	3721879	D	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_3292 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator	3721436..3721879	Shewanella loihica PV-4	4922092
YP_001095255.1	CDS	Shew_3130	NC_009092.1	3721930	3722889	D	PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: shm:Shewmr7_3293 glutamyl-tRNA synthetase, class Ic; glutamate--tRNA ligase	3721930..3722889	Shewanella loihica PV-4	4921997
YP_001095256.1	CDS	Shew_3131	NC_009092.1	3722971	3724413	D	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); poly(A) polymerase	3722971..3724413	Shewanella loihica PV-4	4921998
YP_001095257.1	CDS	Shew_3132	NC_009092.1	3724413	3724901	D	KEGG: shm:Shewmr7_3295 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	3724413..3724901	Shewanella loihica PV-4	4921999
YP_001095258.1	CDS	panB	NC_009092.1	3724997	3725791	D	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase	3724997..3725791	Shewanella loihica PV-4	4922000
YP_001095259.1	CDS	panC	NC_009092.1	3725808	3726656	D	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase	3725808..3726656	Shewanella loihica PV-4	4922001
YP_001095260.1	CDS	Shew_3135	NC_009092.1	3727506	3729149	D	PFAM: L-lactate permease; KEGG: shm:Shewmr7_2807 L-lactate permease; L-lactate permease	3727506..3729149	Shewanella loihica PV-4	4922002
YP_001095261.1	CDS	Shew_3136	NC_009092.1	3729217	3732021	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: she:Shewmr4_2735 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein	3729217..3732021	Shewanella loihica PV-4	4922003
YP_001095262.1	CDS	Shew_3137	NC_009092.1	3732390	3732950	D	KEGG: she:Shewmr4_0724 hypothetical protein; hypothetical protein	3732390..3732950	Shewanella loihica PV-4	4922004
YP_001095263.1	CDS	Shew_3138	NC_009092.1	3733101	3733517	D	hypothetical protein	3733101..3733517	Shewanella loihica PV-4	4922005
YP_001095264.1	CDS	Shew_3139	NC_009092.1	3733514	3733828	D	hypothetical protein	3733514..3733828	Shewanella loihica PV-4	4922006
YP_001095265.1	CDS	Shew_3140	NC_009092.1	3733918	3734706	R	PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein; ABC transporter	complement(3733918..3734706)	Shewanella loihica PV-4	4922007
YP_001095266.1	CDS	Shew_3141	NC_009092.1	3734703	3735644	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0823 ABC transporter-related protein; ABC transporter-like protein	complement(3734703..3735644)	Shewanella loihica PV-4	4922008
YP_001095267.1	CDS	Shew_3142	NC_009092.1	3735749	3736279	R	KEGG: shm:Shewmr7_0822 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase	complement(3735749..3736279)	Shewanella loihica PV-4	4922009
YP_001095268.1	CDS	Shew_3143	NC_009092.1	3736298	3736957	R	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase	complement(3736298..3736957)	Shewanella loihica PV-4	4922010
YP_001095269.1	CDS	Shew_3144	NC_009092.1	3737005	3738444	R	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0820 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	complement(3737005..3738444)	Shewanella loihica PV-4	4922011
YP_001095270.1	CDS	Shew_3145	NC_009092.1	3739119	3739715	R	KEGG: cps:CPS_0193 hypothetical protein; hypothetical protein	complement(3739119..3739715)	Shewanella loihica PV-4	4921983
YP_001095271.1	CDS	Shew_3146	NC_009092.1	3740452	3740916	R	hypothetical protein	complement(3740452..3740916)	Shewanella loihica PV-4	4921984
YP_001095272.1	CDS	Shew_3147	NC_009092.1	3742317	3742889	R	KEGG: sdn:Sden_3258 hypothetical protein; hypothetical protein	complement(3742317..3742889)	Shewanella loihica PV-4	4921985
YP_001095273.1	CDS	Shew_3148	NC_009092.1	3743787	3744224	R	PFAM: regulatory protein, MarR; KEGG: rso:RSc1851 putative transcription regulator protein; MarR family transcriptional regulator	complement(3743787..3744224)	Shewanella loihica PV-4	4921986
YP_001095274.1	CDS	Shew_3149	NC_009092.1	3744379	3744837	D	KEGG: sil:SPO1325 lipoprotein, putative; putative lipoprotein	3744379..3744837	Shewanella loihica PV-4	4921987
YP_001095275.1	CDS	Shew_3150	NC_009092.1	3744852	3745148	D	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppr:PBPRA1783 hypothetical protein; antibiotic biosynthesis monooxygenase	3744852..3745148	Shewanella loihica PV-4	4921988
YP_001095276.1	CDS	Shew_3151	NC_009092.1	3745672	3748866	D	KEGG: sfr:Sfri_0187 hypothetical protein; hypothetical protein	3745672..3748866	Shewanella loihica PV-4	4921989
YP_001095277.1	CDS	Shew_3152	NC_009092.1	3749031	3753968	R	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: shm:Shewmr7_3529 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin	complement(3749031..3753968)	Shewanella loihica PV-4	4921990
YP_001095278.1	CDS	Shew_3153	NC_009092.1	3754528	3755532	D	PFAM: regulatory protein, LysR; KEGG: she:Shewmr4_2072 transcriptional regulator, LysR family; LysR family transcriptional regulator	3754528..3755532	Shewanella loihica PV-4	4921991
YP_001095279.1	CDS	Shew_3154	NC_009092.1	3755682	3756656	R	PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_3839 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(3755682..3756656)	Shewanella loihica PV-4	4921992
YP_001095280.1	CDS	Shew_3155	NC_009092.1	3757039	3757548	D	KEGG: shm:Shewmr7_3838 hypothetical protein; hypothetical protein	3757039..3757548	Shewanella loihica PV-4	4921993
YP_001095281.1	CDS	Shew_3156	NC_009092.1	3757647	3758111	D	KEGG: sfr:Sfri_0615 hypothetical protein; hypothetical protein	3757647..3758111	Shewanella loihica PV-4	4921994
YP_001095282.1	CDS	Shew_3157	NC_009092.1	3758122	3758814	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfr:Sfri_0614 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin	3758122..3758814	Shewanella loihica PV-4	4921995
YP_001095283.1	CDS	Shew_3158	NC_009092.1	3758811	3759752	D	PFAM: Polysulphide reductase, NrfD; KEGG: shm:Shewmr7_3835 polysulphide reductase, NrfD; polysulfide reductase NrfD	3758811..3759752	Shewanella loihica PV-4	4921996
YP_001095284.1	CDS	Shew_3159	NC_009092.1	3759767	3760828	R	KEGG: cps:CPS_4482 Bax domain protein; FlgJ-like protein	complement(3759767..3760828)	Shewanella loihica PV-4	4921936
YP_001095285.1	CDS	Shew_3160	NC_009092.1	3761384	3761872	D	hypothetical protein	3761384..3761872	Shewanella loihica PV-4	4921937
YP_001095286.1	CDS	Shew_3161	NC_009092.1	3762008	3762955	D	KEGG: son:SO0403 hypothetical protein; hypothetical protein	3762008..3762955	Shewanella loihica PV-4	4921938
YP_001095287.1	CDS	Shew_3162	NC_009092.1	3762993	3766559	D	KEGG: son:SO0404 hypothetical protein; hypothetical protein	3762993..3766559	Shewanella loihica PV-4	4921939
YP_001095288.1	CDS	Shew_3163	NC_009092.1	3766819	3767886	D	KEGG: she:Shewmr4_0458 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase	3766819..3767886	Shewanella loihica PV-4	4921940
YP_001095289.1	CDS	Shew_3164	NC_009092.1	3767947	3768672	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0917 ABC transporter-related protein; ABC transporter-like protein	complement(3767947..3768672)	Shewanella loihica PV-4	4921941
YP_001095290.1	CDS	Shew_3165	NC_009092.1	3768665	3769345	R	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_3054 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit	complement(3768665..3769345)	Shewanella loihica PV-4	4921942
YP_001095291.1	CDS	Shew_3166	NC_009092.1	3769352	3770080	R	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein	complement(3769352..3770080)	Shewanella loihica PV-4	4921943
YP_001095292.1	CDS	Shew_3167	NC_009092.1	3770609	3770854	D	KEGG: son:SO3972 hypothetical transposase; hypothetical protein	3770609..3770854	Shewanella loihica PV-4	4921944
YP_001095293.1	CDS	Shew_3168	NC_009092.1	3771371	3772087	D	PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_0500 protein of unknown function DUF541; hypothetical protein	3771371..3772087	Shewanella loihica PV-4	4921945
YP_001095294.1	CDS	Shew_3169	NC_009092.1	3772275	3773273	D	KEGG: sfr:Sfri_0588 WD-40 repeat protein; WD-40 repeat-containing protein	3772275..3773273	Shewanella loihica PV-4	4921946
YP_001095295.1	CDS	Shew_3170	NC_009092.1	3773303	3774493	R	PFAM: sodium/hydrogen exchanger; KEGG: sfr:Sfri_3583 sodium/hydrogen exchanger; sodium/hydrogen exchanger	complement(3773303..3774493)	Shewanella loihica PV-4	4921947
YP_001095296.1	CDS	Shew_3171	NC_009092.1	3774643	3775407	R	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase	complement(3774643..3775407)	Shewanella loihica PV-4	4921948
YP_001095297.1	CDS	Shew_3172	NC_009092.1	3775635	3776915	R	KEGG: cps:CPS_4664 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; 4-aminobutyrate aminotransferase	complement(3775635..3776915)	Shewanella loihica PV-4	4921949
YP_001095298.1	CDS	Shew_3173	NC_009092.1	3776933	3778390	R	KEGG: cps:CPS_2023 succinate-semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase	complement(3776933..3778390)	Shewanella loihica PV-4	4921950
YP_001095299.1	CDS	Shew_3174	NC_009092.1	3778538	3779500	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4666 transcriptional regulator, LysR family; LysR family transcriptional regulator	3778538..3779500	Shewanella loihica PV-4	4921669
YP_001095300.1	CDS	Shew_3175	NC_009092.1	3779695	3780957	R	PFAM: outer membrane porin; KEGG: shm:Shewmr7_2788 outer membrane porin; outer membrane porin	complement(3779695..3780957)	Shewanella loihica PV-4	4921670
YP_001095301.1	CDS	Shew_3176	NC_009092.1	3781321	3782049	D	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sfr:Sfri_3695 regulatory protein GntR, HTH; regulatory protein GntR	3781321..3782049	Shewanella loihica PV-4	4921671
YP_001095302.1	CDS	Shew_3177	NC_009092.1	3782100	3782624	R	KEGG: son:SO1504 hypothetical protein; hypothetical protein	complement(3782100..3782624)	Shewanella loihica PV-4	4921672
YP_001095303.1	CDS	Shew_3178	NC_009092.1	3783257	3784588	D	PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_0954 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC	3783257..3784588	Shewanella loihica PV-4	4921673
YP_001095304.1	CDS	Shew_3179	NC_009092.1	3784744	3785520	D	KEGG: shm:Shewmr7_0953 hypothetical protein; hypothetical protein	3784744..3785520	Shewanella loihica PV-4	4921674
YP_001095305.1	CDS	Shew_3180	NC_009092.1	3785529	3786245	D	PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0952 pseudouridine synthase, Rsu; pseudouridine synthase	3785529..3786245	Shewanella loihica PV-4	4921675
YP_001095306.1	CDS	Shew_3181	NC_009092.1	3786798	3788465	D	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2787 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein	3786798..3788465	Shewanella loihica PV-4	4921676
YP_001095307.1	CDS	Shew_3182	NC_009092.1	3788532	3788888	D	KEGG: sfr:Sfri_3693 hypothetical protein; hypothetical protein	3788532..3788888	Shewanella loihica PV-4	4921677
YP_001095308.1	CDS	Shew_3183	NC_009092.1	3789252	3789635	D	hypothetical protein	3789252..3789635	Shewanella loihica PV-4	4921678
YP_001095309.1	CDS	Shew_3184	NC_009092.1	3790354	3790872	D	hypothetical protein	3790354..3790872	Shewanella loihica PV-4	4921679
YP_001095310.1	CDS	Shew_3185	NC_009092.1	3791417	3792193	D	KEGG: ecs:ECs0400 hypothetical protein; hypothetical protein	3791417..3792193	Shewanella loihica PV-4	4921680
YP_001095311.1	CDS	Shew_3186	NC_009092.1	3792254	3793255	D	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: eca:ECA2247 Arac-family transcriptional regulator; AraC family transcriptional regulator	3792254..3793255	Shewanella loihica PV-4	4921681
YP_001095312.1	CDS	Shew_3187	NC_009092.1	3793777	3795933	R	KEGG: shm:Shewmr7_0949 hypothetical protein; hypothetical protein	complement(3793777..3795933)	Shewanella loihica PV-4	4921682
YP_001095313.1	CDS	Shew_3188	NC_009092.1	3796157	3797344	R	PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: sfr:Sfri_0574 aromatic amino acid permease; aromatic amino acid permease	complement(3796157..3797344)	Shewanella loihica PV-4	4921578
YP_001095314.1	CDS	Shew_3189	NC_009092.1	3797974	3798528	D	PFAM: protein of unknown function UPF0016; KEGG: she:Shewmr4_3028 protein of unknown function UPF0016; hypothetical protein	3797974..3798528	Shewanella loihica PV-4	4921579
YP_001095315.1	CDS	Shew_3190	NC_009092.1	3798656	3800116	R	PFAM: Catalase domain protein; KEGG: son:SO1070 catalase; catalase	complement(3798656..3800116)	Shewanella loihica PV-4	4921580
YP_001095316.1	CDS	Shew_3191	NC_009092.1	3800828	3801079	R	KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein	complement(3800828..3801079)	Shewanella loihica PV-4	4921581
YP_001095317.1	CDS	Shew_3192	NC_009092.1	3801234	3801683	R	TIGRFAM: uncharacterized domain 1 protein; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0943 uncharacterized domain 1 protein; hypothetical protein	complement(3801234..3801683)	Shewanella loihica PV-4	4921582
YP_001095318.1	CDS	Shew_3193	NC_009092.1	3802344	3804959	R	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_3033 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase	complement(3802344..3804959)	Shewanella loihica PV-4	4921583
YP_001095319.1	CDS	Shew_3194	NC_009092.1	3805624	3806286	R	PFAM: regulatory protein, LuxR; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sdn:Sden_3096 regulatory protein, LuxR; LuxR family transcriptional regulator	complement(3805624..3806286)	Shewanella loihica PV-4	4921584
YP_001095320.1	CDS	Shew_3195	NC_009092.1	3806545	3807150	R	KEGG: she:Shewmr4_0719 hypothetical protein; hypothetical protein	complement(3806545..3807150)	Shewanella loihica PV-4	4921585
YP_001095321.1	CDS	Shew_3196	NC_009092.1	3807583	3808812	D	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase	3807583..3808812	Shewanella loihica PV-4	4921586
YP_001095322.1	CDS	Shew_3197	NC_009092.1	3808954	3809496	D	hypothetical protein	3808954..3809496	Shewanella loihica PV-4	4921587
YP_001095323.1	CDS	Shew_3198	NC_009092.1	3809680	3810648	D	PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: she:Shewmr4_0717 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase)	3809680..3810648	Shewanella loihica PV-4	4921588
YP_001095324.1	CDS	Shew_3199	NC_009092.1	3810776	3811795	R	PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3306 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase	complement(3810776..3811795)	Shewanella loihica PV-4	4921589
YP_001095325.1	CDS	Shew_3200	NC_009092.1	3812011	3817317	R	KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase	complement(3812011..3817317)	Shewanella loihica PV-4	4921590
YP_001095326.1	CDS	Shew_3201	NC_009092.1	3817906	3818571	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_0713 ABC transporter-related protein; ABC transporter-like protein	3817906..3818571	Shewanella loihica PV-4	4921591
YP_001095327.1	CDS	Shew_3202	NC_009092.1	3818564	3821116	D	PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein	3818564..3821116	Shewanella loihica PV-4	4921592
YP_001095328.1	CDS	Shew_3203	NC_009092.1	3821113	3822351	D	KEGG: she:Shewmr4_0711 hypothetical protein; hypothetical protein	3821113..3822351	Shewanella loihica PV-4	4921561
YP_001095329.1	CDS	Shew_3204	NC_009092.1	3822388	3822966	R	PFAM: cytochrome B561; KEGG: she:Shewmr4_0244 cytochrome b561; cytochrome B561	complement(3822388..3822966)	Shewanella loihica PV-4	4921562
YP_001095330.1	CDS	Shew_3205	NC_009092.1	3823342	3823611	D	PFAM: NapD family protein; KEGG: shm:Shewmr7_3317 NapD family protein; NapD family protein	3823342..3823611	Shewanella loihica PV-4	4921563
YP_001095331.1	CDS	Shew_3206	NC_009092.1	3823608	3826091	D	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit	3823608..3826091	Shewanella loihica PV-4	4921564
YP_001095332.1	CDS	napG	NC_009092.1	3826150	3826881	D	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component	3826150..3826881	Shewanella loihica PV-4	4921565
YP_001095333.1	CDS	napH	NC_009092.1	3826878	3827777	D	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component	3826878..3827777	Shewanella loihica PV-4	4921566
YP_001095334.1	CDS	Shew_3209	NC_009092.1	3827774	3828196	D	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_3321 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit	3827774..3828196	Shewanella loihica PV-4	4921567
YP_001095335.1	CDS	Shew_3210	NC_009092.1	3828726	3829013	D	hypothetical protein	3828726..3829013	Shewanella loihica PV-4	4921568
YP_001095336.1	CDS	Shew_3211	NC_009092.1	3829066	3829662	D	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_0196 glutathione S-transferase-like; glutathione S-transferase domain-containing protein	3829066..3829662	Shewanella loihica PV-4	4921569
YP_001095337.1	CDS	Shew_3212	NC_009092.1	3829732	3830226	D	KEGG: sde:Sde_1847 cell division protein ZipA; cell division protein ZipA	3829732..3830226	Shewanella loihica PV-4	4921570
YP_001095338.1	CDS	Shew_3213	NC_009092.1	3831854	3832264	R	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VPA0104 putative ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase	complement(3831854..3832264)	Shewanella loihica PV-4	4921571
YP_001095339.1	CDS	Shew_3214	NC_009092.1	3832483	3832743	D	KEGG: she:Shewmr4_2212 hypothetical protein; hypothetical protein	3832483..3832743	Shewanella loihica PV-4	4921572
YP_001095340.1	CDS	Shew_3215	NC_009092.1	3832865	3835471	D	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_2232 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase	3832865..3835471	Shewanella loihica PV-4	4921573
YP_001095341.1	CDS	Shew_3216	NC_009092.1	3835437	3836336	R	KEGG: sfr:Sfri_2734 hypothetical protein; hypothetical protein	complement(3835437..3836336)	Shewanella loihica PV-4	4921574
YP_001095342.1	CDS	Shew_3217	NC_009092.1	3836432	3837625	D	PFAM: sodium/hydrogen exchanger; KEGG: pcu:pc0094 putative Na(+)/H(+) antiporter; sodium/hydrogen exchanger	3836432..3837625	Shewanella loihica PV-4	4921541
YP_001095343.1	CDS	Shew_3218	NC_009092.1	3837701	3842251	R	PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: she:Shewmr4_0696 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L	complement(3837701..3842251)	Shewanella loihica PV-4	4921542
YP_001095344.1	CDS	Shew_3219	NC_009092.1	3842372	3843283	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0695 transcriptional regulator, LysR family; LysR family transcriptional regulator	3842372..3843283	Shewanella loihica PV-4	4921543
YP_001095345.1	CDS	Shew_3220	NC_009092.1	3843326	3844132	R	PFAM: penicillin-binding protein, transpeptidase; KEGG: shm:Shewmr7_3328 beta-lactamase; beta-lactamase	complement(3843326..3844132)	Shewanella loihica PV-4	4921544
YP_001095346.1	CDS	Shew_3221	NC_009092.1	3844542	3845702	D	KEGG: sfr:Sfri_0546 hypothetical protein; hypothetical protein	3844542..3845702	Shewanella loihica PV-4	4921545
YP_001095347.1	CDS	Shew_3222	NC_009092.1	3845775	3846386	D	PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein	3845775..3846386	Shewanella loihica PV-4	4921546
YP_001095348.1	CDS	Shew_3223	NC_009092.1	3846562	3847317	D	PFAM: Endonuclease I; KEGG: she:Shewmr4_0691 deoxyribonuclease I; deoxyribonuclease I	3846562..3847317	Shewanella loihica PV-4	4921547
YP_001095349.1	CDS	Shew_3224	NC_009092.1	3847321	3848052	D	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE	3847321..3848052	Shewanella loihica PV-4	4921548
YP_001095350.1	CDS	Shew_3225	NC_009092.1	3848091	3849038	D	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase	3848091..3849038	Shewanella loihica PV-4	4921549
YP_001095351.1	CDS	Shew_3226	NC_009092.1	3849051	3850682	D	PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_0688 alkaline phosphatase; alkaline phosphatase	3849051..3850682	Shewanella loihica PV-4	4921550
YP_001095352.1	CDS	Shew_3227	NC_009092.1	3850736	3853213	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: cps:CPS_0952 GGDEF/EAL domain protein; diguanylate cyclase/phosphodiesterase	complement(3850736..3853213)	Shewanella loihica PV-4	4921551
YP_001095353.1	CDS	Shew_3228	NC_009092.1	3853218	3854414	R	KEGG: net:Neut_1424 conserved hypothetical protein; hypothetical protein	complement(3853218..3854414)	Shewanella loihica PV-4	4921552
YP_001095354.1	CDS	Shew_3229	NC_009092.1	3854398	3854838	R	KEGG: noc:Noc_1149 hypothetical protein; hypothetical protein	complement(3854398..3854838)	Shewanella loihica PV-4	4921553
YP_001095355.1	CDS	Shew_3230	NC_009092.1	3855021	3856049	D	PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; Methyltransferase small, N-terminal domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase	3855021..3856049	Shewanella loihica PV-4	4921554
YP_001095356.1	CDS	Shew_3231	NC_009092.1	3856235	3857905	D	PFAM: protein of unknown function DUF342; KEGG: shm:Shewmr7_0674 protein of unknown function DUF342; hypothetical protein	3856235..3857905	Shewanella loihica PV-4	4921555
YP_001095357.1	CDS	Shew_3232	NC_009092.1	3857943	3859121	D	PFAM: peptidase M50; KEGG: she:Shewmr4_3275 peptidase M50; peptidase M50	3857943..3859121	Shewanella loihica PV-4	4921516
YP_001095358.1	CDS	Shew_3233	NC_009092.1	3859531	3860301	D	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pae:PA1544 transcriptional regulator Anr; Crp/FNR family transcriptional regulator	3859531..3860301	Shewanella loihica PV-4	4921517
YP_001095359.1	CDS	Shew_3234	NC_009092.1	3860426	3861277	R	KEGG: cya:CYA_0280 thrombospondin N-terminal-like domain protein; hypothetical protein	complement(3860426..3861277)	Shewanella loihica PV-4	4921518
YP_001095360.1	CDS	Shew_3235	NC_009092.1	3861274	3862770	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: mes:Meso_2223 multi-sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(3861274..3862770)	Shewanella loihica PV-4	4921519
YP_001095361.1	CDS	Shew_3236	NC_009092.1	3862928	3863353	R	hypothetical protein	complement(3862928..3863353)	Shewanella loihica PV-4	4921520
YP_001095362.1	CDS	Shew_3237	NC_009092.1	3863407	3867945	R	PFAM: Na-Ca exchanger/integrin-beta4; KEGG: aba:Acid345_1066 hypothetical protein; Na-Ca exchanger/integrin-beta4	complement(3863407..3867945)	Shewanella loihica PV-4	4921521
YP_001095363.1	CDS	Shew_3238	NC_009092.1	3868128	3868778	R	hypothetical protein	complement(3868128..3868778)	Shewanella loihica PV-4	4921522
YP_001095364.1	CDS	Shew_3239	NC_009092.1	3868848	3873455	R	PFAM: Na-Ca exchanger/integrin-beta4; KEGG: aba:Acid345_1066 hypothetical protein; Na-Ca exchanger/integrin-beta4	complement(3868848..3873455)	Shewanella loihica PV-4	4921523
YP_001095365.1	CDS	Shew_3240	NC_009092.1	3873857	3874480	R	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: dar:Daro_3108 regulatory protein, LuxR:response regulator receiver; two component LuxR family transcriptional regulator	complement(3873857..3874480)	Shewanella loihica PV-4	4921524
YP_001095366.1	CDS	Shew_3241	NC_009092.1	3874687	3876579	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: abo:ABO_2371 TonB-dependent receptor protein; TonB-dependent receptor	3874687..3876579	Shewanella loihica PV-4	4921525
YP_001095367.1	CDS	Shew_3242	NC_009092.1	3876957	3877919	D	PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_0288 transcriptional regulator, LysR family; LysR family transcriptional regulator	3876957..3877919	Shewanella loihica PV-4	4921526
YP_001095368.1	CDS	Shew_3243	NC_009092.1	3878097	3881171	R	PFAM: molydopterin dinucleotide-binding region; KEGG: ppr:PBPRB1372 hypothetical tetrathionate reductase; molydopterin dinucleotide-binding region	complement(3878097..3881171)	Shewanella loihica PV-4	4921527
YP_001095369.1	CDS	Shew_3244	NC_009092.1	3881176	3881892	R	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vpa:VP2011 tetrathionate reductase, subunit B; 4Fe-4S ferredoxin	complement(3881176..3881892)	Shewanella loihica PV-4	4921528
YP_001095370.1	CDS	Shew_3245	NC_009092.1	3881902	3882798	R	PFAM: Polysulphide reductase, NrfD; KEGG: eba:ebA1013 molybdenum enzyme of unknown function, small subunit, membrane anchor; polysulfide reductase, NrfD	complement(3881902..3882798)	Shewanella loihica PV-4	4921529
YP_001095371.1	CDS	Shew_3246	NC_009092.1	3883355	3884032	D	KEGG: sfr:Sfri_3533 hypothetical protein; hypothetical protein	3883355..3884032	Shewanella loihica PV-4	4921323
YP_001095372.1	CDS	Shew_3247	NC_009092.1	3884805	3884933	D	KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein	3884805..3884933	Shewanella loihica PV-4	4923662
YP_001095373.1	CDS	Shew_3248	NC_009092.1	3885066	3885677	R	KEGG: shm:Shewmr7_0765 hypothetical protein; hypothetical protein	complement(3885066..3885677)	Shewanella loihica PV-4	4921325
YP_001095374.1	CDS	Shew_3249	NC_009092.1	3885907	3887547	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase	3885907..3887547	Shewanella loihica PV-4	4921326
YP_001095375.1	CDS	Shew_3250	NC_009092.1	3887555	3888784	R	catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T	complement(3887555..3888784)	Shewanella loihica PV-4	4921327
YP_001095376.1	CDS	Shew_3251	NC_009092.1	3888897	3889709	R	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: she:Shewmr4_3226 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein	complement(3888897..3889709)	Shewanella loihica PV-4	4921328
YP_001095377.1	CDS	Shew_3252	NC_009092.1	3890077	3891135	D	PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3227 outer membrane porin, putative; porin	3890077..3891135	Shewanella loihica PV-4	4921329
YP_001095378.1	CDS	Shew_3253	NC_009092.1	3891249	3891512	R	hypothetical protein	complement(3891249..3891512)	Shewanella loihica PV-4	4921330
YP_001095379.1	CDS	Shew_3254	NC_009092.1	3891675	3892235	R	KEGG: sde:Sde_1944 cytochrome c family protein; cytochrome c family protein	complement(3891675..3892235)	Shewanella loihica PV-4	4921331
YP_001095380.1	CDS	Shew_3255	NC_009092.1	3892287	3892760	R	KEGG: ddi:DDB0217895 hypothetical protein; hypothetical protein	complement(3892287..3892760)	Shewanella loihica PV-4	4921332
YP_001095381.1	CDS	Shew_3256	NC_009092.1	3892793	3893749	R	PFAM: copper resistance B precursor; KEGG: pha:PSHAb0010 copper resistance protein B [precursor] (CPx-type copper ATPase); copper resistance B	complement(3892793..3893749)	Shewanella loihica PV-4	4921333
YP_001095382.1	CDS	Shew_3257	NC_009092.1	3893746	3895491	R	TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: sde:Sde_1947 putative copper resistance transmembrane protein; CopA family copper resistance protein	complement(3893746..3895491)	Shewanella loihica PV-4	4921334
YP_001095383.1	CDS	Shew_3258	NC_009092.1	3895743	3896459	D	TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAb0012 transcriptional activator of copper resistance (two-component regulatory system with CusS); two component heavy metal response transcriptional regulator	3895743..3896459	Shewanella loihica PV-4	4921335
YP_001095384.1	CDS	Shew_3259	NC_009092.1	3896461	3897849	D	TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sde:Sde_1949 putative 2-component sensor protein; heavy metal sensor signal transduction histidine kinase	3896461..3897849	Shewanella loihica PV-4	4921336
YP_001095385.1	CDS	Shew_3260	NC_009092.1	3898387	3899415	D	PFAM: porin, Gram-negative type; KEGG: sfr:Sfri_0503 porin, gram-negative type; porin	3898387..3899415	Shewanella loihica PV-4	4921337
YP_001095386.1	CDS	Shew_3261	NC_009092.1	3899524	3900180	R	catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase	complement(3899524..3900180)	Shewanella loihica PV-4	4921294
YP_001095387.1	CDS	Shew_3262	NC_009092.1	3900286	3900630	R	KEGG: shm:Shewmr7_3450 hypothetical protein; hypothetical protein	complement(3900286..3900630)	Shewanella loihica PV-4	4921295
YP_001095388.1	CDS	Shew_3263	NC_009092.1	3900842	3902677	D	PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: she:Shewmr4_0579 serine/threonine protein kinase; serine/threonine protein kinase	3900842..3902677	Shewanella loihica PV-4	4921296
YP_001095389.1	CDS	Shew_3264	NC_009092.1	3902711	3903304	R	PFAM: FxsA cytoplasmic membrane protein; KEGG: shm:Shewmr7_0548 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein	complement(3902711..3903304)	Shewanella loihica PV-4	4921297
YP_001095390.1	CDS	Shew_3265	NC_009092.1	3903830	3904153	D	PFAM: CutA1 divalent ion tolerance protein; KEGG: shm:Shewmr7_0547 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein	3903830..3904153	Shewanella loihica PV-4	4921298
YP_001095391.1	CDS	dipZ	NC_009092.1	3904150	3905958	D	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein	3904150..3905958	Shewanella loihica PV-4	4921299
YP_001095392.1	CDS	Shew_3267	NC_009092.1	3906111	3907739	D	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_0545 sodium/hydrogen exchanger; sodium/hydrogen exchanger	3906111..3907739	Shewanella loihica PV-4	4921300
YP_001095393.1	CDS	Shew_3268	NC_009092.1	3907833	3908834	D	KEGG: eli:ELI_02225 hypothetical protein; hypothetical protein	3907833..3908834	Shewanella loihica PV-4	4921301
YP_001095394.1	CDS	Shew_3269	NC_009092.1	3908831	3912061	D	PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: tma:TM1193 beta-galactosidase; beta-galactosidase	3908831..3912061	Shewanella loihica PV-4	4921302
YP_001095395.1	CDS	Shew_3270	NC_009092.1	3912080	3913504	D	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pat:Patl_3683 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter	3912080..3913504	Shewanella loihica PV-4	4921303
YP_001095396.1	CDS	Shew_3271	NC_009092.1	3913768	3914934	D	TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: she:Shewmr4_3408 galactokinase; galactokinase	3913768..3914934	Shewanella loihica PV-4	4921304
YP_001095397.1	CDS	Shew_3272	NC_009092.1	3915046	3916086	D	PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase	3915046..3916086	Shewanella loihica PV-4	4921305
YP_001095398.1	CDS	Shew_3273	NC_009092.1	3916203	3916637	R	KEGG: she:Shewmr4_3410 hypothetical protein; hypothetical protein	complement(3916203..3916637)	Shewanella loihica PV-4	4921306
YP_001095399.1	CDS	Shew_3274	NC_009092.1	3916948	3917961	R	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase	complement(3916948..3917961)	Shewanella loihica PV-4	4921307
YP_001095400.1	CDS	Shew_3275	NC_009092.1	3918244	3918708	D	PFAM: CheC domain protein; KEGG: sfr:Sfri_3344 CheC domain protein; CheC domain-containing protein	3918244..3918708	Shewanella loihica PV-4	4921111
YP_001095401.1	CDS	Shew_3276	NC_009092.1	3918735	3920024	R	KEGG: vpa:VP2733 hypothetical protein; hypothetical protein	complement(3918735..3920024)	Shewanella loihica PV-4	4921112
YP_001095402.1	CDS	alr	NC_009092.1	3920029	3921105	R	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase	complement(3920029..3921105)	Shewanella loihica PV-4	4921113
YP_001095403.1	CDS	Shew_3278	NC_009092.1	3921215	3922621	R	KEGG: shm:Shewmr7_0692 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase	complement(3921215..3922621)	Shewanella loihica PV-4	4921114
YP_001095404.1	CDS	Shew_3279	NC_009092.1	3922738	3924942	D	KEGG: shm:Shewmr7_0691 hypothetical protein; hypothetical protein	3922738..3924942	Shewanella loihica PV-4	4921115
YP_001095405.1	CDS	Shew_3280	NC_009092.1	3925049	3925486	D	hypothetical protein	3925049..3925486	Shewanella loihica PV-4	4921116
YP_001095406.1	CDS	rplI	NC_009092.1	3925564	3926016	R	in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9	complement(3925564..3926016)	Shewanella loihica PV-4	4921117
YP_001095407.1	CDS	rpsR	NC_009092.1	3926044	3926271	R	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18	complement(3926044..3926271)	Shewanella loihica PV-4	4921118
YP_001095408.1	CDS	Shew_3283	NC_009092.1	3926284	3926502	R	KEGG: sdn:Sden_0516 single-strand binding protein/primosomal replication protein N; single-strand binding protein/primosomal replication protein N	complement(3926284..3926502)	Shewanella loihica PV-4	4921119
YP_001095409.1	CDS	rpsF	NC_009092.1	3926598	3927005	R	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6	complement(3926598..3927005)	Shewanella loihica PV-4	4921120
YP_001095410.1	CDS	Shew_3285	NC_009092.1	3927228	3927971	D	PFAM: protein of unknown function DUF481; KEGG: she:Shewmr4_3261 protein of unknown function DUF481; hypothetical protein	3927228..3927971	Shewanella loihica PV-4	4921121
YP_001095411.1	CDS	Shew_3286	NC_009092.1	3928777	3929334	R	hypothetical protein	complement(3928777..3929334)	Shewanella loihica PV-4	4921122
YP_001095412.1	CDS	Shew_3287	NC_009092.1	3929466	3929801	R	hypothetical protein	complement(3929466..3929801)	Shewanella loihica PV-4	4921123
YP_001095413.1	CDS	Shew_3288	NC_009092.1	3930840	3931580	R	Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase	complement(3930840..3931580)	Shewanella loihica PV-4	4921124
YP_001095414.1	CDS	Shew_3289	NC_009092.1	3931595	3934069	R	KEGG: she:Shewmr4_3264 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R	complement(3931595..3934069)	Shewanella loihica PV-4	4921125
YP_001095415.1	CDS	Shew_3290	NC_009092.1	3934127	3934813	R	PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX; Sel1 domain-containing protein	complement(3934127..3934813)	Shewanella loihica PV-4	4920791
YP_001095416.1	CDS	Shew_3291	NC_009092.1	3935074	3936369	R	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase	complement(3935074..3936369)	Shewanella loihica PV-4	4920792
YP_001095417.1	CDS	Shew_3292	NC_009092.1	3936436	3936624	R	KEGG: sdn:Sden_0508 hypothetical protein; hypothetical protein	complement(3936436..3936624)	Shewanella loihica PV-4	4920793
YP_001095418.1	CDS	rpsI	NC_009092.1	3936731	3937123	R	forms a direct contact with the tRNA during translation; 30S ribosomal protein S9	complement(3936731..3937123)	Shewanella loihica PV-4	4920794
YP_001095419.1	CDS	rplM	NC_009092.1	3937139	3937570	R	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13	complement(3937139..3937570)	Shewanella loihica PV-4	4920795
YP_001095420.1	CDS	Shew_3295	NC_009092.1	3937844	3938950	R	PFAM: AFG1-family ATPase; KEGG: sfr:Sfri_3361 AFG1-family ATPase; AFG1 family ATPase	complement(3937844..3938950)	Shewanella loihica PV-4	4920796
YP_001095421.1	CDS	Shew_3296	NC_009092.1	3939261	3940613	D	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_3271 protease Do; protease Do	3939261..3940613	Shewanella loihica PV-4	4920797
YP_001095422.1	CDS	Shew_3297	NC_009092.1	3940751	3941830	D	TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS	3940751..3941830	Shewanella loihica PV-4	4920798
YP_001095423.1	CDS	Shew_3298	NC_009092.1	3942260	3943519	R	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	complement(3942260..3943519)	Shewanella loihica PV-4	4920799
YP_001095424.1	CDS	Shew_3299	NC_009092.1	3943535	3943786	R	PFAM: BolA family protein; KEGG: shm:Shewmr7_3338 BolA family protein; BolA family protein	complement(3943535..3943786)	Shewanella loihica PV-4	4920800
YP_001095425.1	CDS	Shew_3300	NC_009092.1	3943802	3944095	R	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: shm:Shewmr7_3339 SpoIIAA family protein; anti-sigma-factor antagonist	complement(3943802..3944095)	Shewanella loihica PV-4	4920801
YP_001095426.1	CDS	Shew_3301	NC_009092.1	3944095	3944748	R	PFAM: toluene tolerance family protein; KEGG: she:Shewmr4_0682 toluene tolerance family protein; toluene tolerance family protein	complement(3944095..3944748)	Shewanella loihica PV-4	4920802
YP_001095427.1	CDS	Shew_3302	NC_009092.1	3944760	3945233	R	PFAM: Mammalian cell entry related domain protein; KEGG: shm:Shewmr7_3341 mammalian cell entry related domain protein; hypothetical protein	complement(3944760..3945233)	Shewanella loihica PV-4	4920803
YP_001095428.1	CDS	Shew_3303	NC_009092.1	3945305	3946090	R	PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein	complement(3945305..3946090)	Shewanella loihica PV-4	4920804
YP_001095429.1	CDS	Shew_3304	NC_009092.1	3946077	3946955	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3343 ABC transporter-related protein; ABC transporter-like protein	complement(3946077..3946955)	Shewanella loihica PV-4	4923942
YP_001095430.1	CDS	Shew_3305	NC_009092.1	3947121	3948080	D	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sdn:Sden_0495 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter	3947121..3948080	Shewanella loihica PV-4	4923943
YP_001095431.1	CDS	Shew_3306	NC_009092.1	3948114	3949091	D	KEGG: shm:Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein	3948114..3949091	Shewanella loihica PV-4	4923944
YP_001095432.1	CDS	Shew_3307	NC_009092.1	3949093	3949644	D	forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	3949093..3949644	Shewanella loihica PV-4	4923945
YP_001095433.1	CDS	Shew_3308	NC_009092.1	3949641	3950198	D	PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein	3949641..3950198	Shewanella loihica PV-4	4923946
YP_001095434.1	CDS	Shew_3309	NC_009092.1	3950185	3950730	D	PFAM: OstA family protein; KEGG: shm:Shewmr7_3347 OstA family protein; OstA family protein	3950185..3950730	Shewanella loihica PV-4	4923947
YP_001095435.1	CDS	Shew_3310	NC_009092.1	3950727	3951458	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3348 ABC transporter-related protein; ABC transporter-like protein	3950727..3951458	Shewanella loihica PV-4	4923948
YP_001095436.1	CDS	Shew_3311	NC_009092.1	3951593	3953080	D	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54	3951593..3953080	Shewanella loihica PV-4	4923949
YP_001095437.1	CDS	Shew_3312	NC_009092.1	3953111	3953398	D	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_3350 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA	3953111..3953398	Shewanella loihica PV-4	4923950
YP_001095438.1	CDS	Shew_3313	NC_009092.1	3953401	3953844	D	TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: shm:Shewmr7_3351 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN	3953401..3953844	Shewanella loihica PV-4	4923951
YP_001095439.1	CDS	Shew_3314	NC_009092.1	3953841	3954689	D	PFAM: uncharacterized P-loop ATPase protein UPF0042; KEGG: shm:Shewmr7_3352 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein	3953841..3954689	Shewanella loihica PV-4	4923952
YP_001095440.1	CDS	Shew_3315	NC_009092.1	3954682	3954957	D	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: she:Shewmr4_0669 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr	3954682..3954957	Shewanella loihica PV-4	4923953
YP_001095441.1	CDS	Shew_3316	NC_009092.1	3955058	3956425	D	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter	3955058..3956425	Shewanella loihica PV-4	4923954
YP_001095442.1	CDS	Shew_3317	NC_009092.1	3956530	3957213	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VP1983 putaive two-component response regulator; two component transcriptional regulator	3956530..3957213	Shewanella loihica PV-4	4923955
YP_001095443.1	CDS	Shew_3318	NC_009092.1	3957225	3958487	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VP1984 putative two-component sensor; integral membrane sensor signal transduction histidine kinase	3957225..3958487	Shewanella loihica PV-4	4923956
YP_001095444.1	CDS	Shew_3319	NC_009092.1	3958607	3958855	D	hypothetical protein	3958607..3958855	Shewanella loihica PV-4	4924029
YP_001095445.1	CDS	Shew_3320	NC_009092.1	3959396	3960985	R	KEGG: cps:CPS_0069 putative FG-GAP repeat lipoprotein; FG-GAP repeat-containing protein	complement(3959396..3960985)	Shewanella loihica PV-4	4924030
YP_001095446.1	CDS	Shew_3321	NC_009092.1	3961149	3961922	R	PFAM: protein of unknown function DUF752; KEGG: chu:CHU_0640 hypothetical protein; hypothetical protein	complement(3961149..3961922)	Shewanella loihica PV-4	4924031
YP_001095447.1	CDS	Shew_3322	NC_009092.1	3962234	3963160	D	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRB1503 hypothetical membrane protein; transporter DMT superfamily protein	3962234..3963160	Shewanella loihica PV-4	4924032
YP_001095448.1	CDS	Shew_3323	NC_009092.1	3963080	3963715	R	KEGG: syn:sll1969 lipase homolog; lipase-like protein	complement(3963080..3963715)	Shewanella loihica PV-4	4924033
YP_001095449.1	CDS	Shew_3324	NC_009092.1	3963773	3964834	D	KEGG: sdn:Sden_3286 hypothetical protein; hypothetical protein	3963773..3964834	Shewanella loihica PV-4	4924034
YP_001095450.1	CDS	Shew_3325	NC_009092.1	3965280	3966449	D	PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1259 transport protein of the major facilitator; major facilitator superfamily transporter	3965280..3966449	Shewanella loihica PV-4	4924035
YP_001095451.1	CDS	Shew_3326	NC_009092.1	3966446	3967687	R	PFAM: sodium/hydrogen exchanger; KEGG: hch:HCH_01176 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; sodium/hydrogen exchanger	complement(3966446..3967687)	Shewanella loihica PV-4	4924036
YP_001095452.1	CDS	Shew_3327	NC_009092.1	3967766	3969211	R	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: shm:Shewmr7_3492 RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase	complement(3967766..3969211)	Shewanella loihica PV-4	4924037
YP_001095453.1	CDS	Shew_3328	NC_009092.1	3969688	3972324	D	PFAM: Ig domain protein, group 2 domain protein; Kelch repeat-containing protein; KEGG: hch:HCH_00094 cell wall surface anchor family protein; Ig domain-containing protein	3969688..3972324	Shewanella loihica PV-4	4924038
YP_001095454.1	CDS	Shew_3329	NC_009092.1	3972575	3974506	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: shm:Shewmr7_3362 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase	3972575..3974506	Shewanella loihica PV-4	4924039
YP_001095455.1	CDS	Shew_3330	NC_009092.1	3974683	3975888	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4425 GGDEF family protein; diguanylate cyclase	3974683..3975888	Shewanella loihica PV-4	4924040
YP_001095456.1	CDS	Shew_3331	NC_009092.1	3975872	3976648	R	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: sdn:Sden_3444 cyclic nucleotide-binding; Crp/FNR family transcriptional regulator	complement(3975872..3976648)	Shewanella loihica PV-4	4924041
YP_001095457.1	CDS	Shew_3332	NC_009092.1	3976771	3977223	R	PFAM: protein of unknown function DUF461; KEGG: sdn:Sden_3479 protein of unknown function DUF461; hypothetical protein	complement(3976771..3977223)	Shewanella loihica PV-4	4924042
YP_001095458.1	CDS	Shew_3333	NC_009092.1	3977244	3977882	R	PFAM: electron transport protein SCO1/SenC; KEGG: sdn:Sden_3480 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC	complement(3977244..3977882)	Shewanella loihica PV-4	4923088
YP_001095459.1	CDS	Shew_3334	NC_009092.1	3977898	3978734	R	KEGG: sdn:Sden_3481 hypothetical protein; hypothetical protein	complement(3977898..3978734)	Shewanella loihica PV-4	4923089
YP_001095460.1	CDS	Shew_3335	NC_009092.1	3978835	3980013	R	KEGG: sdn:Sden_3482 nitrite reductase, copper containing; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; nitrite reductase	complement(3978835..3980013)	Shewanella loihica PV-4	4923090
YP_001095461.1	CDS	Shew_3336	NC_009092.1	3980421	3980921	R	PFAM: regulatory protein, MarR; KEGG: sfr:Sfri_3643 transcriptional regulator, MarR family protein; MarR family transcriptional regulator	complement(3980421..3980921)	Shewanella loihica PV-4	4923091
YP_001095462.1	CDS	Shew_3337	NC_009092.1	3981099	3981995	D	PFAM: protein of unknown function DUF6, transmembrane; KEGG: sfr:Sfri_3644 protein of unknown function DUF6, transmembrane; hypothetical protein	3981099..3981995	Shewanella loihica PV-4	4923092
YP_001095463.1	CDS	Shew_3338	NC_009092.1	3982084	3982293	D	PFAM: TOBE domain protein; KEGG: she:Shewmr4_2490 molybdenum-pterin binding; TOBE domain-containing protein	3982084..3982293	Shewanella loihica PV-4	4923093
YP_001095464.1	CDS	Shew_3339	NC_009092.1	3982465	3982839	R	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: hch:HCH_10005 hypothetical protein; glutathione-dependent formaldehyde-activating protein	complement(3982465..3982839)	Shewanella loihica PV-4	4923094
YP_001095465.1	CDS	Shew_3340	NC_009092.1	3983615	3985672	D	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0484 TonB-dependent receptor; TonB-dependent receptor	3983615..3985672	Shewanella loihica PV-4	4923095
YP_001095466.1	CDS	Shew_3341	NC_009092.1	3985748	3986728	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: vfi:VF2362 GGDEF family protein; GAF sensor-containing diguanylate cyclase	complement(3985748..3986728)	Shewanella loihica PV-4	4923096
YP_001095467.1	CDS	Shew_3342	NC_009092.1	3986929	3987465	R	PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: she:Shewmr4_3529 response regulator receiver protein; two component Fis family transcriptional regulator	complement(3986929..3987465)	Shewanella loihica PV-4	4923097
YP_001095468.1	CDS	Shew_3343	NC_009092.1	3987462	3988709	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3530 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(3987462..3988709)	Shewanella loihica PV-4	4923098
YP_001095469.1	CDS	Shew_3344	NC_009092.1	3988719	3989642	R	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_0424 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase	complement(3988719..3989642)	Shewanella loihica PV-4	4923099
YP_001095470.1	CDS	Shew_3345	NC_009092.1	3989642	3990565	R	cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase	complement(3989642..3990565)	Shewanella loihica PV-4	4923100
YP_001095471.1	CDS	Shew_3346	NC_009092.1	3990767	3991450	D	KEGG: shm:Shewmr7_0108 hypothetical protein; hypothetical protein	3990767..3991450	Shewanella loihica PV-4	4923101
YP_001095472.1	CDS	Shew_3347	NC_009092.1	3991453	3993333	D	KEGG: she:Shewmr4_3532 hypothetical protein; hypothetical protein	3991453..3993333	Shewanella loihica PV-4	4923102
YP_001095473.1	CDS	Shew_3348	NC_009092.1	3993368	3994309	R	PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0418 pseudouridine synthase; pseudouridine synthase	complement(3993368..3994309)	Shewanella loihica PV-4	4922189
YP_001095474.1	CDS	Shew_3349	NC_009092.1	3994343	3994921	R	KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La	complement(3994343..3994921)	Shewanella loihica PV-4	4922190
YP_001095475.1	CDS	Shew_3350	NC_009092.1	3995132	3996187	R	KEGG: shm:Shewmr7_0416 hypothetical protein; hypothetical protein	complement(3995132..3996187)	Shewanella loihica PV-4	4922191
YP_001095476.1	CDS	Shew_3351	NC_009092.1	3996305	3996745	D	hypothetical protein	3996305..3996745	Shewanella loihica PV-4	4922192
YP_001095477.1	CDS	Shew_3352	NC_009092.1	3996816	3997832	D	KEGG: pha:PSHAa1736 hypothetical protein; hypothetical protein	3996816..3997832	Shewanella loihica PV-4	4922193
YP_001095478.1	CDS	Shew_3353	NC_009092.1	3997922	3998383	D	PFAM: conserved hypothetical protein 22; KEGG: sfr:Sfri_3560 conserved hypothetical protein 22; hypothetical protein	3997922..3998383	Shewanella loihica PV-4	4922194
YP_001095479.1	CDS	Shew_3354	NC_009092.1	3998747	4001026	D	PFAM: aminotransferase, class V; beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: cps:CPS_0838 aminotransferase, class V; class V aminotransferase	3998747..4001026	Shewanella loihica PV-4	4922195
YP_001095480.1	CDS	Shew_3355	NC_009092.1	4001107	4002327	R	KEGG: cps:CPS_3938 hypothetical protein; hypothetical protein	complement(4001107..4002327)	Shewanella loihica PV-4	4922196
YP_001095481.1	CDS	Shew_3356	NC_009092.1	4003102	4006332	R	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3513 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein	complement(4003102..4006332)	Shewanella loihica PV-4	4922197
YP_001095482.1	CDS	Shew_3357	NC_009092.1	4006345	4007574	R	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sdn:Sden_0575 secretion protein HlyD; RND family efflux transporter MFP subunit	complement(4006345..4007574)	Shewanella loihica PV-4	4922198
YP_001095483.1	CDS	Shew_3358	NC_009092.1	4007656	4008936	R	KEGG: son:SO0518 outer membrane efflux family protein, putative; outer membrane efflux family protein	complement(4007656..4008936)	Shewanella loihica PV-4	4922199
YP_001095484.1	CDS	Shew_3359	NC_009092.1	4009148	4009579	R	KEGG: sfr:Sfri_3589 hypothetical protein; hypothetical protein	complement(4009148..4009579)	Shewanella loihica PV-4	4922200
YP_001095485.1	CDS	Shew_3360	NC_009092.1	4009720	4009902	R	KEGG: shm:Shewmr7_3517 hypothetical protein; hypothetical protein	complement(4009720..4009902)	Shewanella loihica PV-4	4922201
YP_001095486.1	CDS	Shew_3361	NC_009092.1	4009952	4010335	R	KEGG: sdn:Sden_3283 hypothetical protein; hypothetical protein	complement(4009952..4010335)	Shewanella loihica PV-4	4922202
YP_001095487.1	CDS	Shew_3362	NC_009092.1	4010448	4010858	D	PFAM: Class I peptide chain release factor; KEGG: shm:Shewmr7_3519 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein	4010448..4010858	Shewanella loihica PV-4	4922203
YP_001095488.1	CDS	Shew_3363	NC_009092.1	4010975	4011427	D	KEGG: sdn:Sden_3285 3-dehydroquinate dehydratase, type II; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II; 3-dehydroquinate dehydratase	4010975..4011427	Shewanella loihica PV-4	4924206
YP_001095489.1	CDS	Shew_3364	NC_009092.1	4011434	4011865	D	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: plu:plu4074 biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP); acetyl-CoA carboxylase, biotin carboxyl carrier protein	4011434..4011865	Shewanella loihica PV-4	4924207
YP_001095490.1	CDS	Shew_3365	NC_009092.1	4011906	4013258	D	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pmu:PM1091 biotin carboxylase, a subunit; acetyl-CoA carboxylase, biotin carboxylase	4011906..4013258	Shewanella loihica PV-4	4924208
YP_001095491.1	CDS	Shew_3366	NC_009092.1	4013329	4016526	R	PFAM: histidine kinase, HAMP region domain protein; SMART: extracellular solute-binding protein, family 3; metal-dependent phosphohydrolase, HD region; KEGG: vvy:VV1527 hypothetical protein; metal dependent phosphohydrolase	complement(4013329..4016526)	Shewanella loihica PV-4	4924209
YP_001095492.1	CDS	Shew_3367	NC_009092.1	4016607	4017659	R	KEGG: sfr:Sfri_0480 hypothetical protein; hypothetical protein	complement(4016607..4017659)	Shewanella loihica PV-4	4924210
YP_001095493.1	CDS	Shew_3368	NC_009092.1	4017685	4018215	R	PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase	complement(4017685..4018215)	Shewanella loihica PV-4	4924211
YP_001095494.1	CDS	Shew_3369	NC_009092.1	4018320	4018574	R	KEGG: shm:Shewmr7_0408 hypothetical protein; hypothetical protein	complement(4018320..4018574)	Shewanella loihica PV-4	4924212
YP_001095495.1	CDS	Shew_3370	NC_009092.1	4018911	4019396	D	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA	4018911..4019396	Shewanella loihica PV-4	4924213
YP_001095496.1	CDS	Shew_3371	NC_009092.1	4019944	4020363	R	hypothetical protein	complement(4019944..4020363)	Shewanella loihica PV-4	4924214
YP_001095497.1	CDS	Shew_3372	NC_009092.1	4021340	4022383	D	PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: she:Shewmr4_3550 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase	4021340..4022383	Shewanella loihica PV-4	4924215
YP_001095498.1	CDS	Shew_3373	NC_009092.1	4022609	4023364	D	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0405 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase	4022609..4023364	Shewanella loihica PV-4	4924216
YP_001095499.1	CDS	Shew_3374	NC_009092.1	4023585	4024208	D	PFAM: protein of unknown function DUF1243; KEGG: she:Shewmr4_3552 protein of unknown function DUF1243; hypothetical protein	4023585..4024208	Shewanella loihica PV-4	4924217
YP_001095500.1	CDS	Shew_3375	NC_009092.1	4024205	4025854	D	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: shm:Shewmr7_0403 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase	4024205..4025854	Shewanella loihica PV-4	4924218
YP_001095501.1	CDS	Shew_3376	NC_009092.1	4025915	4026145	D	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sdn:Sden_0458 twin-arginine translocation protein, TatA/E family; twin arginine-targeting protein translocase	4025915..4026145	Shewanella loihica PV-4	4924219
YP_001095502.1	CDS	Shew_3377	NC_009092.1	4026152	4026550	D	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shm:Shewmr7_0401 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB	4026152..4026550	Shewanella loihica PV-4	4923917
YP_001095503.1	CDS	Shew_3378	NC_009092.1	4026554	4027309	D	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sfr:Sfri_0470 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC	4026554..4027309	Shewanella loihica PV-4	4923918
YP_001095504.1	CDS	Shew_3379	NC_009092.1	4027421	4027960	D	KEGG: she:Shewmr4_3557 hypothetical protein; hypothetical protein	4027421..4027960	Shewanella loihica PV-4	4923919
YP_001095505.1	CDS	Shew_3380	NC_009092.1	4027960	4028769	D	PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease	4027960..4028769	Shewanella loihica PV-4	4923920
YP_001095506.1	CDS	Shew_3381	NC_009092.1	4028756	4030624	D	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase	4028756..4030624	Shewanella loihica PV-4	4923921
YP_001095507.1	CDS	Shew_3382	NC_009092.1	4030716	4031732	D	catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase	4030716..4031732	Shewanella loihica PV-4	4923922
YP_001095508.1	CDS	Shew_3383	NC_009092.1	4031812	4032372	R	hypothetical protein	complement(4031812..4032372)	Shewanella loihica PV-4	4923923
YP_001095509.1	CDS	ubiA	NC_009092.1	4032598	4033458	R	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase	complement(4032598..4033458)	Shewanella loihica PV-4	4923924
YP_001095510.1	CDS	uvrD	NC_009092.1	4033576	4035756	R	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II	complement(4033576..4035756)	Shewanella loihica PV-4	4923925
YP_001095511.1	CDS	Shew_3386	NC_009092.1	4035929	4036864	R	PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein	complement(4035929..4036864)	Shewanella loihica PV-4	4923926
YP_001095512.1	CDS	Shew_3387	NC_009092.1	4036861	4037787	R	PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein	complement(4036861..4037787)	Shewanella loihica PV-4	4923927
YP_001095513.1	CDS	Shew_3388	NC_009092.1	4037817	4038278	R	PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein; hypothetical protein	complement(4037817..4038278)	Shewanella loihica PV-4	4923928
YP_001095514.1	CDS	Shew_3389	NC_009092.1	4038577	4039332	D	KEGG: sfr:Sfri_3402 hypothetical protein; hypothetical protein	4038577..4039332	Shewanella loihica PV-4	4923929
YP_001095515.1	CDS	Shew_3390	NC_009092.1	4039409	4040167	R	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase	complement(4039409..4040167)	Shewanella loihica PV-4	4923930
YP_001095516.1	CDS	Shew_3391	NC_009092.1	4040611	4040826	D	PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein	4040611..4040826	Shewanella loihica PV-4	4923931
YP_001095517.1	CDS	Shew_3392	NC_009092.1	4040893	4042068	R	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_0445 diaminopimelate decarboxylase; ornithine decarboxylase	complement(4040893..4042068)	Shewanella loihica PV-4	4923695
YP_001095518.1	CDS	Shew_3393	NC_009092.1	4042292	4042747	R	KEGG: son:SO4138 hypothetical protein; hypothetical protein	complement(4042292..4042747)	Shewanella loihica PV-4	4923696
YP_001095519.1	CDS	Shew_3394	NC_009092.1	4042979	4043812	D	PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0443 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS	4042979..4043812	Shewanella loihica PV-4	4923697
YP_001095520.1	CDS	Shew_3395	NC_009092.1	4043855	4044733	R	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: shm:Shewmr7_3501 radical SAM domain protein; radical SAM domain-containing protein	complement(4043855..4044733)	Shewanella loihica PV-4	4923698
YP_001095521.1	CDS	Shew_3396	NC_009092.1	4044903	4045205	D	KEGG: sfr:Sfri_3497 hypothetical protein; hypothetical protein	4044903..4045205	Shewanella loihica PV-4	4923699
YP_001095522.1	CDS	Shew_3397	NC_009092.1	4045361	4045831	R	PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_0501 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	complement(4045361..4045831)	Shewanella loihica PV-4	4923700
YP_001095523.1	CDS	Shew_3398	NC_009092.1	4046198	4046494	D	PFAM: cytochrome c, class I; KEGG: sdn:Sden_1464 cytochrome c, class I; cytochrome c, class I	4046198..4046494	Shewanella loihica PV-4	4923701
YP_001095524.1	CDS	Shew_3399	NC_009092.1	4046792	4048933	D	PFAM: FMN-binding domain protein; KEGG: ppr:PBPRB0846 hypothetical NosR, regulator of nitric oxide reductase transcription; FMN-binding domain-containing protein	4046792..4048933	Shewanella loihica PV-4	4923702
YP_001095525.1	CDS	Shew_3400	NC_009092.1	4048986	4050872	D	reduces nitrous oxide to nitrogen; nitrous-oxide reductase	4048986..4050872	Shewanella loihica PV-4	4923703
YP_001095526.1	CDS	Shew_3401	NC_009092.1	4051047	4052420	D	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: sdn:Sden_2218 periplasmic copper-binding; periplasmic copper-binding protein	4051047..4052420	Shewanella loihica PV-4	4923704
YP_001095527.1	CDS	Shew_3402	NC_009092.1	4052425	4053393	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: sdn:Sden_2217 ABC transporter-related protein; ABC transporter-like protein	4052425..4053393	Shewanella loihica PV-4	4923705
YP_001095528.1	CDS	Shew_3403	NC_009092.1	4053390	4054208	D	PFAM: ABC-2 type transporter; KEGG: ppr:PBPRB0850 hypothetical nitrous oxide metabolic protein; ABC transporter	4053390..4054208	Shewanella loihica PV-4	4923706
YP_001095529.1	CDS	Shew_3404	NC_009092.1	4054208	4054729	D	PFAM: NosL family protein; KEGG: ppr:PBPRB0851 hypothetical NosL protein; NosL family protein	4054208..4054729	Shewanella loihica PV-4	4923707
YP_001095530.1	CDS	Shew_3405	NC_009092.1	4054776	4056392	R	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA family drug resistance transporter	complement(4054776..4056392)	Shewanella loihica PV-4	4923708
YP_001095531.1	CDS	Shew_3406	NC_009092.1	4056389	4057465	R	PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3509 secretion protein HlyD family protein; secretion protein HlyD family protein	complement(4056389..4057465)	Shewanella loihica PV-4	4923560
YP_001095532.1	CDS	Shew_3407	NC_009092.1	4057576	4058511	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family; LysR family transcriptional regulator	4057576..4058511	Shewanella loihica PV-4	4923561
YP_001095533.1	CDS	Shew_3408	NC_009092.1	4058620	4059345	D	PFAM: protein of unknown function DUF28; KEGG: sfr:Sfri_1086 protein of unknown function DUF28; hypothetical protein	4058620..4059345	Shewanella loihica PV-4	4923562
YP_001095534.1	CDS	Shew_3409	NC_009092.1	4059737	4060768	D	KEGG: she:Shewmr4_3064 putative lipoprotein; putative lipoprotein	4059737..4060768	Shewanella loihica PV-4	4923563
YP_001095535.1	CDS	Shew_3410	NC_009092.1	4060864	4062288	R	PFAM: permease; KEGG: she:Shewmr4_0447 permease; permease	complement(4060864..4062288)	Shewanella loihica PV-4	4923564
YP_001095536.1	CDS	zntR	NC_009092.1	4062292	4062768	R	mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator	complement(4062292..4062768)	Shewanella loihica PV-4	4923565
YP_001095537.1	CDS	purH	NC_009092.1	4063067	4064656	D	involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	4063067..4064656	Shewanella loihica PV-4	4923566
YP_001095538.1	CDS	Shew_3413	NC_009092.1	4064708	4066009	D	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase	4064708..4066009	Shewanella loihica PV-4	4923567
YP_001095539.1	CDS	Shew_3414	NC_009092.1	4066298	4069300	D	KEGG: vpa:VP0948 hypothetical protein; hypothetical protein	4066298..4069300	Shewanella loihica PV-4	4923568
YP_001095540.1	CDS	Shew_3415	NC_009092.1	4069409	4070215	R	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_3588 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase	complement(4069409..4070215)	Shewanella loihica PV-4	4923569
YP_001095541.1	CDS	Shew_3416	NC_009092.1	4070305	4072878	R	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; KEGG: son:SO0437 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	complement(4070305..4072878)	Shewanella loihica PV-4	4923570
YP_001095542.1	CDS	Shew_3417	NC_009092.1	4073181	4073903	D	KEGG: sfr:Sfri_0487 hypothetical protein; hypothetical protein	4073181..4073903	Shewanella loihica PV-4	4923571
YP_001095543.1	CDS	Shew_3418	NC_009092.1	4073913	4074641	D	KEGG: shm:Shewmr7_0668 hypothetical protein; hypothetical protein	4073913..4074641	Shewanella loihica PV-4	4923572
YP_001095544.1	CDS	Shew_3419	NC_009092.1	4074739	4075467	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0485 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator	4074739..4075467	Shewanella loihica PV-4	4923573
YP_001095545.1	CDS	Shew_3420	NC_009092.1	4075470	4076951	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sfr:Sfri_0484 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	4075470..4076951	Shewanella loihica PV-4	4923574
YP_001095546.1	CDS	Shew_3421	NC_009092.1	4076960	4077235	R	hypothetical protein	complement(4076960..4077235)	Shewanella loihica PV-4	4923501
YP_001095547.1	CDS	hemE	NC_009092.1	4077352	4078416	R	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase	complement(4077352..4078416)	Shewanella loihica PV-4	4923502
YP_001095548.1	CDS	Shew_3423	NC_009092.1	4078894	4079364	D	binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor	4078894..4079364	Shewanella loihica PV-4	4923503
YP_001095549.1	CDS	Shew_3424	NC_009092.1	4079474	4082071	R	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	complement(4079474..4082071)	Shewanella loihica PV-4	4923504
YP_001095550.1	CDS	Shew_3425	NC_009092.1	4082485	4083156	D	YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase	4082485..4083156	Shewanella loihica PV-4	4923505
YP_001095551.1	CDS	Shew_3426	NC_009092.1	4083244	4085298	R	PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_0433 endothelin-converting enzyme 1; endothelin-converting protein 1	complement(4083244..4085298)	Shewanella loihica PV-4	4923506
YP_001095552.1	CDS	Shew_3427	NC_009092.1	4085430	4087643	R	PFAM: Patatin; KEGG: she:Shewmr4_0432 patatin; patatin	complement(4085430..4087643)	Shewanella loihica PV-4	4923507
YP_001095553.1	CDS	Shew_3428	NC_009092.1	4087739	4092193	R	KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	complement(4087739..4092193)	Shewanella loihica PV-4	4923508
YP_001095554.1	CDS	Shew_3429	NC_009092.1	4092336	4093763	R	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase	complement(4092336..4093763)	Shewanella loihica PV-4	4923509
YP_001095555.1	CDS	Shew_3430	NC_009092.1	4093917	4095869	R	KEGG: shm:Shewmr7_3598 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	complement(4093917..4095869)	Shewanella loihica PV-4	4923510
YP_001095556.1	CDS	aceE	NC_009092.1	4095881	4098547	R	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1	complement(4095881..4098547)	Shewanella loihica PV-4	4923511
YP_001095557.1	CDS	pdhR	NC_009092.1	4098617	4099369	R	activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR	complement(4098617..4099369)	Shewanella loihica PV-4	4923512
YP_001095558.1	CDS	Shew_3433	NC_009092.1	4099608	4100459	R	involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE	complement(4099608..4100459)	Shewanella loihica PV-4	4923513
YP_001095559.1	CDS	Shew_3434	NC_009092.1	4100522	4101076	R	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: sfr:Sfri_3780 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase	complement(4100522..4101076)	Shewanella loihica PV-4	4923514
YP_001095560.1	CDS	Shew_3435	NC_009092.1	4101353	4102234	D	KEGG: shm:Shewmr7_3603 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase	4101353..4102234	Shewanella loihica PV-4	4923449
YP_001095561.1	CDS	Shew_3436	NC_009092.1	4103142	4103495	D	KEGG: she:Shewmr4_0422 methylation site containing protein; methylation site containing protein	4103142..4103495	Shewanella loihica PV-4	4923450
YP_001095562.1	CDS	Shew_3437	NC_009092.1	4103663	4105033	R	PFAM: O-antigen polymerase; KEGG: she:Shewmr4_0421 O-antigen polymerase; O-antigen polymerase	complement(4103663..4105033)	Shewanella loihica PV-4	4923451
YP_001095563.1	CDS	Shew_3438	NC_009092.1	4105375	4107084	D	TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_3605 type IV-A pilus assembly ATPase PilB; type IV-A pilus assembly ATPase PilB	4105375..4107084	Shewanella loihica PV-4	4923452
YP_001095564.1	CDS	Shew_3439	NC_009092.1	4107121	4108389	D	PFAM: type II secretion system protein; KEGG: she:Shewmr4_0419 type II secretion system protein; type II secretion system protein	4107121..4108389	Shewanella loihica PV-4	4923453
YP_001095565.1	CDS	Shew_3440	NC_009092.1	4108428	4109339	D	PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: sfr:Sfri_3785 prepilin peptidase; prepilin peptidase	4108428..4109339	Shewanella loihica PV-4	4923454
YP_001095566.1	CDS	coaE	NC_009092.1	4109360	4109965	D	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase	4109360..4109965	Shewanella loihica PV-4	4923455
YP_001095567.1	CDS	Shew_3442	NC_009092.1	4109974	4110708	D	PFAM: protein of unknown function DUF1342; KEGG: shm:Shewmr7_3609 protein of unknown function DUF1342; hypothetical protein	4109974..4110708	Shewanella loihica PV-4	4923456
YP_001095568.1	CDS	Shew_3443	NC_009092.1	4110745	4110969	D	PFAM: protein of unknown function DUF329; KEGG: shm:Shewmr7_3610 protein of unknown function DUF329; hypothetical protein	4110745..4110969	Shewanella loihica PV-4	4923457
YP_001095569.1	CDS	Shew_3444	NC_009092.1	4110970	4111359	D	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: shm:Shewmr7_3611 mutator MutT protein; mutator MutT protein	4110970..4111359	Shewanella loihica PV-4	4923458
YP_001095570.1	CDS	Shew_3445	NC_009092.1	4125120	4127843	R	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA	complement(4125120..4127843)	Shewanella loihica PV-4	4923721
YP_001095571.1	CDS	Shew_3446	NC_009092.1	4127902	4128801	R	PFAM: peptidase M23B; KEGG: shm:Shewmr7_0393 peptidase M23B; peptidase M23B	complement(4127902..4128801)	Shewanella loihica PV-4	4923460
YP_001095572.1	CDS	Shew_3447	NC_009092.1	4128829	4129284	D	KEGG: shm:Shewmr7_0392 hypothetical protein; hypothetical protein	4128829..4129284	Shewanella loihica PV-4	4923461
YP_001095573.1	CDS	lpxC	NC_009092.1	4129288	4130208	R	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	complement(4129288..4130208)	Shewanella loihica PV-4	4923462
YP_001095574.1	CDS	Shew_3449	NC_009092.1	4130387	4131562	R	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ	complement(4130387..4131562)	Shewanella loihica PV-4	4923463
YP_001095575.1	CDS	Shew_3450	NC_009092.1	4131597	4132832	R	PFAM: cell division protein FtsA; KEGG: shm:Shewmr7_0389 cell division protein FtsA; cell division protein FtsA	complement(4131597..4132832)	Shewanella loihica PV-4	4923375
YP_001095576.1	CDS	Shew_3451	NC_009092.1	4132836	4133600	R	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ; cell division protein FtsQ	complement(4132836..4133600)	Shewanella loihica PV-4	4923376
YP_001095577.1	CDS	murC	NC_009092.1	4133744	4135198	R	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase	complement(4133744..4135198)	Shewanella loihica PV-4	4923377
YP_001095578.1	CDS	murG	NC_009092.1	4135191	4136285	R	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase	complement(4135191..4136285)	Shewanella loihica PV-4	4923378
YP_001095579.1	CDS	Shew_3454	NC_009092.1	4136286	4137500	R	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: shm:Shewmr7_0385 cell division protein FtsW; cell division protein FtsW	complement(4136286..4137500)	Shewanella loihica PV-4	4923379
YP_001095580.1	CDS	murD	NC_009092.1	4137493	4138824	R	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase	complement(4137493..4138824)	Shewanella loihica PV-4	4923380
YP_001095581.1	CDS	mraY	NC_009092.1	4138831	4139913	R	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase	complement(4138831..4139913)	Shewanella loihica PV-4	4923381
YP_001095582.1	CDS	Shew_3457	NC_009092.1	4139913	4141283	R	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0382 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase	complement(4139913..4141283)	Shewanella loihica PV-4	4923382
YP_001095583.1	CDS	murE	NC_009092.1	4141280	4142746	R	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	complement(4141280..4142746)	Shewanella loihica PV-4	4923383
YP_001095584.1	CDS	Shew_3459	NC_009092.1	4142746	4144482	R	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: she:Shewmr4_3576 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase	complement(4142746..4144482)	Shewanella loihica PV-4	4923384
YP_001095585.1	CDS	Shew_3460	NC_009092.1	4144479	4144793	R	PFAM: cell division protein FtsL; KEGG: she:Shewmr4_3577 cell division protein FtsL; cell division protein FtsL	complement(4144479..4144793)	Shewanella loihica PV-4	4923385
YP_001095586.1	CDS	mraW	NC_009092.1	4144831	4145772	R	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: she:Shewmr4_3578 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW	complement(4144831..4145772)	Shewanella loihica PV-4	4923386
YP_001095587.1	CDS	Shew_3462	NC_009092.1	4145806	4146264	R	MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ	complement(4145806..4146264)	Shewanella loihica PV-4	4923387
YP_001095588.1	CDS	Shew_3463	NC_009092.1	4146679	4147389	D	PFAM: PepSY-associated TM helix domain protein; KEGG: sdn:Sden_0345 PepSY-associated TM helix; PepSY-associated TM helix domain-containing protein	4146679..4147389	Shewanella loihica PV-4	4923388
YP_001095589.1	CDS	Shew_3464	NC_009092.1	4147386	4148513	D	PFAM: ferredoxin; KEGG: she:Shewmr4_3581 PepSY-associated TM helix domain protein; ferredoxin	4147386..4148513	Shewanella loihica PV-4	4923389
YP_001095590.1	CDS	Shew_3465	NC_009092.1	4148680	4148988	D	KEGG: sfr:Sfri_3814 hypothetical protein; hypothetical protein	4148680..4148988	Shewanella loihica PV-4	4922467
YP_001095591.1	CDS	Shew_3466	NC_009092.1	4149031	4150527	R	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase	complement(4149031..4150527)	Shewanella loihica PV-4	4922468
YP_001095592.1	CDS	Shew_3467	NC_009092.1	4150539	4151036	R	KEGG: sdn:Sden_0341 hypothetical protein; hypothetical protein	complement(4150539..4151036)	Shewanella loihica PV-4	4922469
YP_001095593.1	CDS	Shew_3468	NC_009092.1	4151263	4152618	R	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: she:Shewmr4_3584 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein	complement(4151263..4152618)	Shewanella loihica PV-4	4922470
YP_001095594.1	CDS	leuD	NC_009092.1	4153182	4153787	R	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit	complement(4153182..4153787)	Shewanella loihica PV-4	4922471
YP_001095595.1	CDS	Shew_3470	NC_009092.1	4153797	4155197	R	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit	complement(4153797..4155197)	Shewanella loihica PV-4	4922472
YP_001095596.1	CDS	Shew_3471	NC_009092.1	4155197	4156291	R	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase	complement(4155197..4156291)	Shewanella loihica PV-4	4922473
YP_001095597.1	CDS	Shew_3472	NC_009092.1	4156347	4157918	R	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase	complement(4156347..4157918)	Shewanella loihica PV-4	4922474
YP_001095598.1	CDS	Shew_3473	NC_009092.1	4158437	4160185	D	KEGG: shm:Shewmr7_0367 tetratricopeptide domain protein; response regulator receiver protein	4158437..4160185	Shewanella loihica PV-4	4922475
YP_001095599.1	CDS	Shew_3474	NC_009092.1	4160255	4162087	R	KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ	complement(4160255..4162087)	Shewanella loihica PV-4	4922476
YP_001095600.1	CDS	Shew_3475	NC_009092.1	4162326	4162790	D	TIGRFAM: uncharacterized domain 1 protein; PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_3591 uncharacterized domain 1 protein; hypothetical protein	4162326..4162790	Shewanella loihica PV-4	4922477
YP_001095601.1	CDS	Shew_3476	NC_009092.1	4162947	4163834	D	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein	4162947..4163834	Shewanella loihica PV-4	4922478
YP_001095602.1	CDS	Shew_3477	NC_009092.1	4163805	4164344	R	KEGG: shm:Shewmr7_0363 hypothetical protein; hypothetical protein	complement(4163805..4164344)	Shewanella loihica PV-4	4922479
YP_001095603.1	CDS	Shew_3478	NC_009092.1	4164531	4165853	R	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase	complement(4164531..4165853)	Shewanella loihica PV-4	4922480
YP_001095604.1	CDS	rpmG	NC_009092.1	4166177	4166350	R	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33	complement(4166177..4166350)	Shewanella loihica PV-4	4923157
YP_001095605.1	CDS	rpmB	NC_009092.1	4166357	4166593	R	required for 70S ribosome assembly; 50S ribosomal protein L28	complement(4166357..4166593)	Shewanella loihica PV-4	4923158
YP_001095606.1	CDS	radC	NC_009092.1	4166717	4167418	R	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC	complement(4166717..4167418)	Shewanella loihica PV-4	4923159
YP_001095607.1	CDS	Shew_3482	NC_009092.1	4167530	4168726	D	KEGG: sfr:Sfri_3829 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	4167530..4168726	Shewanella loihica PV-4	4923160
YP_001095608.1	CDS	dut	NC_009092.1	4168723	4169181	D	catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase	4168723..4169181	Shewanella loihica PV-4	4923161
YP_001095609.1	CDS	slmA	NC_009092.1	4169312	4169905	D	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein	4169312..4169905	Shewanella loihica PV-4	4923162
YP_001095610.1	CDS	Shew_3485	NC_009092.1	4170055	4172019	D	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase	4170055..4172019	Shewanella loihica PV-4	4923163
YP_001095611.1	CDS	folE	NC_009092.1	4172245	4172889	D	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I	4172245..4172889	Shewanella loihica PV-4	4923164
YP_001095612.1	CDS	pyrE	NC_009092.1	4172971	4173612	R	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase	complement(4172971..4173612)	Shewanella loihica PV-4	4923165
YP_001095613.1	CDS	rph	NC_009092.1	4173696	4174409	R	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH	complement(4173696..4174409)	Shewanella loihica PV-4	4923166
YP_001095614.1	CDS	Shew_3489	NC_009092.1	4174591	4175454	D	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: she:Shewmr4_3605 hypothetical protein; hypothetical protein	4174591..4175454	Shewanella loihica PV-4	4923167
YP_001095615.1	CDS	Shew_3490	NC_009092.1	4175634	4175864	D	PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0337 transcriptional regulator, XRE family; XRE family transcriptional regulator	4175634..4175864	Shewanella loihica PV-4	4923168
YP_001095616.1	CDS	Shew_3491	NC_009092.1	4175857	4177812	D	KEGG: shm:Shewmr7_0338 hypothetical protein; hypothetical protein	4175857..4177812	Shewanella loihica PV-4	4923169
YP_001095617.1	CDS	Shew_3492	NC_009092.1	4177949	4178560	D	PFAM: Paraquat-inducible protein A; KEGG: pha:PSHAa0301 hypothetical protein; paraquat-inducible protein A	4177949..4178560	Shewanella loihica PV-4	4923170
YP_001095618.1	CDS	Shew_3493	NC_009092.1	4178681	4179967	R	PFAM: acetyl-CoA hydrolase/transferase; KEGG: sfr:Sfri_0862 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase	complement(4178681..4179967)	Shewanella loihica PV-4	4923171
YP_001095619.1	CDS	Shew_3494	NC_009092.1	4180147	4181211	R	PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_0333 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase	complement(4180147..4181211)	Shewanella loihica PV-4	4923046
YP_001095620.1	CDS	Shew_3495	NC_009092.1	4181204	4182148	R	KEGG: son:SO0363 hypothetical protein; hypothetical protein	complement(4181204..4182148)	Shewanella loihica PV-4	4923047
YP_001095621.1	CDS	Shew_3496	NC_009092.1	4182237	4183430	R	KEGG: sfr:Sfri_0366 hypothetical protein; hypothetical protein	complement(4182237..4183430)	Shewanella loihica PV-4	4923048
YP_001095622.1	CDS	gmk	NC_009092.1	4183670	4184293	D	Essential for recycling GMP and indirectly, cGMP; guanylate kinase	4183670..4184293	Shewanella loihica PV-4	4923049
YP_001095623.1	CDS	rpoZ	NC_009092.1	4184353	4184634	D	promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega	4184353..4184634	Shewanella loihica PV-4	4923050
YP_001095624.1	CDS	Shew_3499	NC_009092.1	4184648	4186753	D	KEGG: shm:Shewmr7_0328 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	4184648..4186753	Shewanella loihica PV-4	4923051
YP_001095625.1	CDS	Shew_3500	NC_009092.1	4186788	4187171	D	TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sdn:Sden_3436 YjgF-like protein; putative endoribonuclease L-PSP	4186788..4187171	Shewanella loihica PV-4	4923052
YP_001095626.1	CDS	Shew_3501	NC_009092.1	4187240	4187944	D	specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase	4187240..4187944	Shewanella loihica PV-4	4923053
YP_001095627.1	CDS	Shew_3502	NC_009092.1	4188286	4189941	D	PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase	4188286..4189941	Shewanella loihica PV-4	4923054
YP_001095628.1	CDS	Shew_3503	NC_009092.1	4190118	4191050	D	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shm:Shewmr7_0325 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter	4190118..4191050	Shewanella loihica PV-4	4923055
YP_001095629.1	CDS	Shew_3504	NC_009092.1	4191250	4191915	D	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_0324 TPR repeat-containing protein; hypothetical protein	4191250..4191915	Shewanella loihica PV-4	4923056
YP_001095630.1	CDS	Shew_3505	NC_009092.1	4192016	4193107	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_0323 putative signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	4192016..4193107	Shewanella loihica PV-4	4923057
YP_001095631.1	CDS	Shew_3506	NC_009092.1	4193115	4193711	D	PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator	4193115..4193711	Shewanella loihica PV-4	4923058
YP_001095632.1	CDS	Shew_3507	NC_009092.1	4193856	4195931	D	catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG	4193856..4195931	Shewanella loihica PV-4	4923059
YP_001095633.1	CDS	Shew_3508	NC_009092.1	4196058	4196930	D	KEGG: sfr:Sfri_0355 hypothetical protein; hypothetical protein	4196058..4196930	Shewanella loihica PV-4	4922960
YP_001095634.1	CDS	Shew_3509	NC_009092.1	4197123	4197857	D	KEGG: shm:Shewmr7_3674 hypothetical protein; hypothetical protein	4197123..4197857	Shewanella loihica PV-4	4922961
YP_001095635.1	CDS	Shew_3510	NC_009092.1	4197850	4198671	D	PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_3675 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase	4197850..4198671	Shewanella loihica PV-4	4922962
YP_001095636.1	CDS	Shew_3511	NC_009092.1	4198649	4198903	D	KEGG: shm:Shewmr7_3676 acyl carrier protein, putative; acyl carrier protein	4198649..4198903	Shewanella loihica PV-4	4922963
YP_001095637.1	CDS	Shew_3512	NC_009092.1	4198912	4199160	D	carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein	4198912..4199160	Shewanella loihica PV-4	4922964
YP_001095638.1	CDS	Shew_3513	NC_009092.1	4199160	4199708	D	KEGG: son:SO4370 hypothetical protein; hypothetical protein	4199160..4199708	Shewanella loihica PV-4	4922965
YP_001095639.1	CDS	Shew_3514	NC_009092.1	4199705	4201066	D	KEGG: shm:Shewmr7_3679 hypothetical protein; hypothetical protein	4199705..4201066	Shewanella loihica PV-4	4922966
YP_001095640.1	CDS	Shew_3515	NC_009092.1	4201059	4201430	D	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: she:Shewmr4_0346 thioester dehydrase family protein; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	4201059..4201430	Shewanella loihica PV-4	4922967
YP_001095641.1	CDS	Shew_3516	NC_009092.1	4201430	4203148	D	PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: she:Shewmr4_0345 glycosyl transferase, family 2; glycosyl transferase family protein	4201430..4203148	Shewanella loihica PV-4	4922968
YP_001095642.1	CDS	Shew_3517	NC_009092.1	4203149	4204711	D	PFAM: phenylalanine/histidine ammonia-lyase; KEGG: shm:Shewmr7_3682 histidine ammonia-lyase; histidine ammonia-lyase	4203149..4204711	Shewanella loihica PV-4	4922969
YP_001095643.1	CDS	Shew_3518	NC_009092.1	4204722	4205156	D	KEGG: shm:Shewmr7_3683 thioesterase superfamily protein; thioesterase superfamily protein	4204722..4205156	Shewanella loihica PV-4	4922970
YP_001095644.1	CDS	Shew_3519	NC_009092.1	4205153	4205926	D	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO4376 hypothetical protein; outer membrane lipoprotein carrier protein LolA	4205153..4205926	Shewanella loihica PV-4	4922971
YP_001095645.1	CDS	Shew_3520	NC_009092.1	4205923	4208448	D	KEGG: she:Shewmr4_0341 hypothetical protein; hypothetical protein	4205923..4208448	Shewanella loihica PV-4	4922972
YP_001095646.1	CDS	Shew_3521	NC_009092.1	4208445	4209719	D	PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; tryptophan halogenase	4208445..4209719	Shewanella loihica PV-4	4922973
YP_001095647.1	CDS	Shew_3522	NC_009092.1	4209710	4210282	D	KEGG: sfr:Sfri_0341 hypothetical protein; hypothetical protein	4209710..4210282	Shewanella loihica PV-4	4922974
YP_001095648.1	CDS	Shew_3523	NC_009092.1	4210315	4211520	D	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase	4210315..4211520	Shewanella loihica PV-4	4922856
YP_001095649.1	CDS	Shew_3524	NC_009092.1	4211520	4212113	D	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: sfr:Sfri_0339 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	4211520..4212113	Shewanella loihica PV-4	4922857
YP_001095650.1	CDS	fabG	NC_009092.1	4212110	4212835	D	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase	4212110..4212835	Shewanella loihica PV-4	4922858
YP_001095651.1	CDS	Shew_3526	NC_009092.1	4212835	4214076	D	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II	4212835..4214076	Shewanella loihica PV-4	4922859
YP_001095652.1	CDS	Shew_3527	NC_009092.1	4214194	4214649	D	PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0328 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5	4214194..4214649	Shewanella loihica PV-4	4922860
YP_001095653.1	CDS	Shew_3528	NC_009092.1	4214793	4215131	D	PFAM: Rhodanese domain protein; KEGG: son:SO4394 phage shock protein E; rhodanese domain-containing protein	4214793..4215131	Shewanella loihica PV-4	4922861
YP_001095654.1	CDS	Shew_3529	NC_009092.1	4215413	4216006	R	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase	complement(4215413..4216006)	Shewanella loihica PV-4	4922862
YP_001095655.1	CDS	Shew_3530	NC_009092.1	4216330	4218753	D	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase	4216330..4218753	Shewanella loihica PV-4	4922863
YP_001095656.1	CDS	Shew_3531	NC_009092.1	4218753	4220009	D	TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: sfr:Sfri_0262 aromatic amino acid transporter; aromatic amino acid transporter	4218753..4220009	Shewanella loihica PV-4	4922864
YP_001095657.1	CDS	Shew_3532	NC_009092.1	4220079	4220492	R	PFAM: globin; KEGG: cvi:CV2936 probable bacterial hemoglobin; globin	complement(4220079..4220492)	Shewanella loihica PV-4	4922865
YP_001095658.1	CDS	Shew_3533	NC_009092.1	4220653	4221432	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0263 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase	4220653..4221432	Shewanella loihica PV-4	4922866
YP_001095659.1	CDS	Shew_3534	NC_009092.1	4221817	4224960	R	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_3783 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein	complement(4221817..4224960)	Shewanella loihica PV-4	4922867
YP_001095660.1	CDS	Shew_3535	NC_009092.1	4224969	4226558	R	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_3782 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit	complement(4224969..4226558)	Shewanella loihica PV-4	4922868
YP_001095661.1	CDS	Shew_3536	NC_009092.1	4226582	4227115	R	KEGG: she:Shewmr4_3781 copper-transporting ATPase domain protein; hypothetical protein	complement(4226582..4227115)	Shewanella loihica PV-4	4922869
YP_001095662.1	CDS	Shew_3537	NC_009092.1	4227385	4227792	R	KEGG: son:SOA0156 hypothetical protein; hypothetical protein	complement(4227385..4227792)	Shewanella loihica PV-4	4922840
YP_001095663.1	CDS	Shew_3538	NC_009092.1	4227898	4228335	R	KEGG: sfr:Sfri_0591 hypothetical protein; hypothetical protein	complement(4227898..4228335)	Shewanella loihica PV-4	4922841
YP_001095664.1	CDS	Shew_3539	NC_009092.1	4228454	4228978	R	hypothetical protein	complement(4228454..4228978)	Shewanella loihica PV-4	4922842
YP_001095665.1	CDS	Shew_3540	NC_009092.1	4229319	4229882	D	PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein	4229319..4229882	Shewanella loihica PV-4	4922843
YP_001095666.1	CDS	Shew_3541	NC_009092.1	4230029	4230499	R	TIGRFAM: thioesterase domain, putative; KEGG: she:Shewmr4_0320 thioesterase domain, putative; thioesterase domain-containing protein	complement(4230029..4230499)	Shewanella loihica PV-4	4922844
YP_001095667.1	CDS	Shew_3542	NC_009092.1	4230502	4230939	R	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase	complement(4230502..4230939)	Shewanella loihica PV-4	4922845
YP_001095668.1	CDS	Shew_3543	NC_009092.1	4230969	4231532	R	KEGG: son:SO4399 hypothetical protein; hypothetical protein	complement(4230969..4231532)	Shewanella loihica PV-4	4922846
YP_001095669.1	CDS	Shew_3544	NC_009092.1	4231681	4232631	R	PFAM: alpha/beta hydrolase fold; KEGG: son:SO4400 proline iminopeptidase, putative; alpha/beta hydrolase	complement(4231681..4232631)	Shewanella loihica PV-4	4922847
YP_001095670.1	CDS	rbn	NC_009092.1	4232628	4233485	R	RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN	complement(4232628..4233485)	Shewanella loihica PV-4	4922848
YP_001095671.1	CDS	Shew_3546	NC_009092.1	4233641	4233862	D	KEGG: shm:Shewmr7_3709 hypothetical protein; hypothetical protein	4233641..4233862	Shewanella loihica PV-4	4922849
YP_001095672.1	CDS	Shew_3547	NC_009092.1	4233887	4234537	D	KEGG: shm:Shewmr7_3710 hypothetical protein; hypothetical protein	4233887..4234537	Shewanella loihica PV-4	4922850
YP_001095673.1	CDS	Shew_3548	NC_009092.1	4234838	4235455	D	hypothetical protein	4234838..4235455	Shewanella loihica PV-4	4922851
YP_001095674.1	CDS	Shew_3549	NC_009092.1	4235678	4236892	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sfr:Sfri_0773 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	4235678..4236892	Shewanella loihica PV-4	4922852
YP_001095675.1	CDS	Shew_3550	NC_009092.1	4237977	4238753	R	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: hch:HCH_02929 AraC-type DNA-binding domain-containing protein; AraC family transcriptional regulator	complement(4237977..4238753)	Shewanella loihica PV-4	4922853
YP_001095676.1	CDS	Shew_3551	NC_009092.1	4238853	4239992	D	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: vpa:VPA1016 multidrug resistance protein D; Bcr/CflA subfamily drug resistance transporter	4238853..4239992	Shewanella loihica PV-4	4922854
YP_001095677.1	CDS	Shew_3552	NC_009092.1	4240694	4241707	D	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: she:Shewmr4_3024 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein	4240694..4241707	Shewanella loihica PV-4	4922687
YP_001095678.1	CDS	Shew_3553	NC_009092.1	4242295	4244118	R	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: shm:Shewmr7_3718 GTP-binding protein TypA; GTP-binding protein TypA	complement(4242295..4244118)	Shewanella loihica PV-4	4922688
YP_001095679.1	CDS	glnA	NC_009092.1	4244487	4245896	D	forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase	4244487..4245896	Shewanella loihica PV-4	4922689
YP_001095680.1	CDS	Shew_3555	NC_009092.1	4246258	4247082	D	KEGG: shm:Shewmr7_0880 hypothetical protein; hypothetical protein	4246258..4247082	Shewanella loihica PV-4	4922690
YP_001095681.1	CDS	Shew_3556	NC_009092.1	4247251	4248363	R	PFAM: aminotransferase, class V; KEGG: shm:Shewmr7_3724 aminotransferase, class V; class V aminotransferase	complement(4247251..4248363)	Shewanella loihica PV-4	4922691
YP_001095682.1	CDS	Shew_3557	NC_009092.1	4248367	4249539	R	KEGG: she:Shewmr4_0294 hypothetical protein; hypothetical protein	complement(4248367..4249539)	Shewanella loihica PV-4	4922692
YP_001095683.1	CDS	Shew_3558	NC_009092.1	4249727	4250188	D	PFAM: regulatory protein, AsnC/Lrp family; Helix-turn-helix, type 11 domain protein; KEGG: pha:PSHAa0053 transcriptional regulator; AsnC family transcriptional regulator	4249727..4250188	Shewanella loihica PV-4	4922693
YP_001095684.1	CDS	Shew_3559	NC_009092.1	4250249	4250797	D	KEGG: shm:Shewmr7_3762 hypothetical protein; hypothetical protein	4250249..4250797	Shewanella loihica PV-4	4922694
YP_001095685.1	CDS	Shew_3560	NC_009092.1	4250924	4251979	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3763 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB	4250924..4251979	Shewanella loihica PV-4	4922695
YP_001095686.1	CDS	Shew_3561	NC_009092.1	4252021	4253430	D	KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family	4252021..4253430	Shewanella loihica PV-4	4922696
YP_001095687.1	CDS	Shew_3562	NC_009092.1	4253687	4254577	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family; LysR family transcriptional regulator	4253687..4254577	Shewanella loihica PV-4	4922697
YP_001095688.1	CDS	Shew_3563	NC_009092.1	4255044	4255901	D	KEGG: shm:Shewmr7_2645 hypothetical protein; hypothetical protein	4255044..4255901	Shewanella loihica PV-4	4922698
YP_001095689.1	CDS	Shew_3564	NC_009092.1	4255912	4257198	D	KEGG: shm:Shewmr7_2646 hypothetical protein; hypothetical protein	4255912..4257198	Shewanella loihica PV-4	4922699
YP_001095690.1	CDS	Shew_3565	NC_009092.1	4257269	4260379	R	PFAM: acriflavin resistance protein; KEGG: sdn:Sden_2206 acriflavin resistance protein; acriflavin resistance protein	complement(4257269..4260379)	Shewanella loihica PV-4	4922700
YP_001095691.1	CDS	Shew_3566	NC_009092.1	4260376	4261683	R	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sdn:Sden_2205 membrane-fusion protein; RND family efflux transporter MFP subunit	complement(4260376..4261683)	Shewanella loihica PV-4	4922701
YP_001095692.1	CDS	Shew_3567	NC_009092.1	4261676	4262329	R	PFAM: regulatory protein, TetR; KEGG: sdn:Sden_2204 regulatory protein, TetR; TetR family transcriptional regulator	complement(4261676..4262329)	Shewanella loihica PV-4	4922640
YP_001095693.1	CDS	Shew_3568	NC_009092.1	4262463	4263332	R	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter	complement(4262463..4263332)	Shewanella loihica PV-4	4922641
YP_001095694.1	CDS	Shew_3569	NC_009092.1	4263398	4263841	R	PFAM: protein of unknown function, Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein	complement(4263398..4263841)	Shewanella loihica PV-4	4922642
YP_001095695.1	CDS	Shew_3570	NC_009092.1	4264116	4264799	D	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfr:Sfri_0311 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator	4264116..4264799	Shewanella loihica PV-4	4922643
YP_001095696.1	CDS	Shew_3571	NC_009092.1	4264799	4266166	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; integral membrane sensor signal transduction histidine kinase	4264799..4266166	Shewanella loihica PV-4	4922644
YP_001095697.1	CDS	Shew_3572	NC_009092.1	4266250	4267230	R	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: she:Shewmr4_2154 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase	complement(4266250..4267230)	Shewanella loihica PV-4	4922645
YP_001095698.1	CDS	Shew_3573	NC_009092.1	4267334	4269109	R	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3771 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator	complement(4267334..4269109)	Shewanella loihica PV-4	4922646
YP_001095699.1	CDS	Shew_3574	NC_009092.1	4269448	4270968	D	PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase	4269448..4270968	Shewanella loihica PV-4	4922647
YP_001095700.1	CDS	Shew_3575	NC_009092.1	4271694	4272143	R	hypothetical protein	complement(4271694..4272143)	Shewanella loihica PV-4	4922648
YP_001095701.1	CDS	Shew_3576	NC_009092.1	4273940	4274614	R	KEGG: rme:Rmet_2216 cysteine dioxygenase type I; cysteine dioxygenase type I	complement(4273940..4274614)	Shewanella loihica PV-4	4922649
YP_001095702.1	CDS	Shew_3577	NC_009092.1	4274919	4275383	D	TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: she:Shewmr4_3736 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase	4274919..4275383	Shewanella loihica PV-4	4922650
YP_001095703.1	CDS	Shew_3578	NC_009092.1	4275400	4275909	R	KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein	complement(4275400..4275909)	Shewanella loihica PV-4	4922651
YP_001095704.1	CDS	Shew_3579	NC_009092.1	4275893	4276444	R	KEGG: dar:Daro_0041 hypothetical protein; hypothetical protein	complement(4275893..4276444)	Shewanella loihica PV-4	4922652
YP_001095705.1	CDS	Shew_3580	NC_009092.1	4276656	4278104	R	PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3814 peptidase M16 domain protein; peptidase M16 domain-containing protein	complement(4276656..4278104)	Shewanella loihica PV-4	4922653
YP_001095706.1	CDS	Shew_3581	NC_009092.1	4278101	4279486	R	PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3815 peptidase M16 domain protein; peptidase M16 domain-containing protein	complement(4278101..4279486)	Shewanella loihica PV-4	4922549
YP_001095707.1	CDS	Shew_3582	NC_009092.1	4279646	4280356	D	KEGG: pha:PSHAa0016 hypothetical protein; hypothetical protein	4279646..4280356	Shewanella loihica PV-4	4922550
YP_001095708.1	CDS	Shew_3583	NC_009092.1	4280417	4281052	R	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3819 methyltransferase type 11; type 12 methyltransferase	complement(4280417..4281052)	Shewanella loihica PV-4	4922551
YP_001095709.1	CDS	Shew_3584	NC_009092.1	4281064	4281411	R	KEGG: she:Shewmr4_3747 hypothetical protein; hypothetical protein	complement(4281064..4281411)	Shewanella loihica PV-4	4922552
YP_001095710.1	CDS	Shew_3585	NC_009092.1	4281680	4283785	D	KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	4281680..4283785	Shewanella loihica PV-4	4922553
YP_001095711.1	CDS	Shew_3586	NC_009092.1	4283973	4284575	R	PFAM: DTW domain containing protein; KEGG: sfr:Sfri_0299 DTW domain containing protein; DTW domain-containing protein	complement(4283973..4284575)	Shewanella loihica PV-4	4922554
YP_001095712.1	CDS	Shew_3587	NC_009092.1	4284800	4285753	D	KEGG: sfr:Sfri_3123 hypothetical protein; hypothetical protein	4284800..4285753	Shewanella loihica PV-4	4922555
YP_001095713.1	CDS	Shew_3588	NC_009092.1	4285833	4287035	R	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3750 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter	complement(4285833..4287035)	Shewanella loihica PV-4	4922556
YP_001095714.1	CDS	Shew_3589	NC_009092.1	4287146	4288138	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator	4287146..4288138	Shewanella loihica PV-4	4922557
YP_001095715.1	CDS	Shew_3590	NC_009092.1	4288280	4288630	D	KEGG: son:SO4558 hypothetical protein; hypothetical protein	4288280..4288630	Shewanella loihica PV-4	4922558
YP_001095716.1	CDS	Shew_3591	NC_009092.1	4288620	4289939	R	KEGG: ccr:CC3273 hypothetical protein; hypothetical protein	complement(4288620..4289939)	Shewanella loihica PV-4	4922559
YP_001095717.1	CDS	Shew_3592	NC_009092.1	4289980	4291398	R	PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein; Sel1 domain-containing protein	complement(4289980..4291398)	Shewanella loihica PV-4	4922560
YP_001095718.1	CDS	Shew_3593	NC_009092.1	4291447	4292172	R	KEGG: she:Shewmr4_3755 hypothetical protein; hypothetical protein	complement(4291447..4292172)	Shewanella loihica PV-4	4922561
YP_001095719.1	CDS	Shew_3594	NC_009092.1	4292326	4292844	D	KEGG: shm:Shewmr7_3829 hypothetical protein; hypothetical protein	4292326..4292844	Shewanella loihica PV-4	4922562
YP_001095720.1	CDS	Shew_3595	NC_009092.1	4292936	4293388	D	PFAM: protein of unknown function DUF1332; KEGG: she:Shewmr4_3757 protein of unknown function DUF1332; hypothetical protein	4292936..4293388	Shewanella loihica PV-4	4922563
YP_001095721.1	CDS	Shew_3596	NC_009092.1	4293501	4294226	R	PFAM: Methyltransferase type 11; KEGG: cps:CPS_0687 hypothetical protein; type 11 methyltransferase	complement(4293501..4294226)	Shewanella loihica PV-4	4922501
YP_001095722.1	CDS	Shew_3597	NC_009092.1	4294383	4295642	R	uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH	complement(4294383..4295642)	Shewanella loihica PV-4	4922502
YP_001095723.1	CDS	Shew_3598	NC_009092.1	4295812	4296240	D	PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR; KEGG: shm:Shewmr7_3834 transcriptional regulator, AsnC family; AsnC family transcriptional regulator	4295812..4296240	Shewanella loihica PV-4	4922503
YP_001095724.1	CDS	Shew_3599	NC_009092.1	4296340	4298043	D	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	4296340..4298043	Shewanella loihica PV-4	4922504
YP_001095725.1	CDS	Shew_3600	NC_009092.1	4298043	4298840	D	PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3841 alpha/beta hydrolase fold; alpha/beta hydrolase	4298043..4298840	Shewanella loihica PV-4	4922505
YP_001095726.1	CDS	Shew_3601	NC_009092.1	4298837	4299895	D	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase	4298837..4299895	Shewanella loihica PV-4	4922506
YP_001095727.1	CDS	Shew_3602	NC_009092.1	4299892	4301406	D	TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_3770 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase	4299892..4301406	Shewanella loihica PV-4	4922507
YP_001095728.1	CDS	Shew_3603	NC_009092.1	4301446	4302303	R	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32	complement(4301446..4302303)	Shewanella loihica PV-4	4922508
YP_001095729.1	CDS	Shew_3604	NC_009092.1	4302598	4303563	R	PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; hypothetical protein	complement(4302598..4303563)	Shewanella loihica PV-4	4922509
YP_001095730.1	CDS	Shew_3605	NC_009092.1	4303578	4304279	R	KEGG: shm:Shewmr7_3846 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter-related protein; SMART: AAA ATPase; cell division ATP-binding protein FtsE	complement(4303578..4304279)	Shewanella loihica PV-4	4922510
YP_001095731.1	CDS	Shew_3606	NC_009092.1	4304363	4306048	R	KEGG: shm:Shewmr7_3847 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY	complement(4304363..4306048)	Shewanella loihica PV-4	4922511
YP_001095732.1	CDS	Shew_3607	NC_009092.1	4306297	4306884	D	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_3775 putative methyltransferase; putative methyltransferase	4306297..4306884	Shewanella loihica PV-4	4922512
YP_001095733.1	CDS	Shew_3608	NC_009092.1	4306884	4307174	D	PFAM: protein of unknown function DUF1145; KEGG: shm:Shewmr7_3849 protein of unknown function DUF1145; hypothetical protein	4306884..4307174	Shewanella loihica PV-4	4922513
YP_001095734.1	CDS	Shew_3609	NC_009092.1	4307253	4308014	R	PFAM: type II secretion system protein N; KEGG: shm:Shewmr7_0161 type II secretion system protein N; type II secretion system protein N	complement(4307253..4308014)	Shewanella loihica PV-4	4922514
YP_001095735.1	CDS	Shew_3610	NC_009092.1	4308035	4308511	R	PFAM: General secretion pathway M protein; KEGG: shm:Shewmr7_0160 general secretion pathway M protein; general secretion pathway M protein	complement(4308035..4308511)	Shewanella loihica PV-4	4922396
YP_001095736.1	CDS	Shew_3611	NC_009092.1	4308513	4309703	R	TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: shm:Shewmr7_0159 general secretion pathway protein L; general secretion pathway protein L	complement(4308513..4309703)	Shewanella loihica PV-4	4922397
YP_001095737.1	CDS	Shew_3612	NC_009092.1	4309788	4310786	R	PFAM: General secretion pathway protein K; KEGG: shm:Shewmr7_0158 general secretion pathway protein K; general secretion pathway protein K	complement(4309788..4310786)	Shewanella loihica PV-4	4922398
YP_001095738.1	CDS	Shew_3613	NC_009092.1	4310779	4311558	R	TIGRFAM: general secretion pathway protein J; KEGG: she:Shewmr4_0162 general secretion pathway protein J; general secretion pathway protein J	complement(4310779..4311558)	Shewanella loihica PV-4	4922399
YP_001095739.1	CDS	Shew_3614	NC_009092.1	4311539	4311943	R	TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: shm:Shewmr7_0156 general secretion pathway protein I; general secretion pathway protein I	complement(4311539..4311943)	Shewanella loihica PV-4	4922400
YP_001095740.1	CDS	Shew_3615	NC_009092.1	4311936	4312514	R	TIGRFAM: general secretion pathway protein H; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H	complement(4311936..4312514)	Shewanella loihica PV-4	4922401
YP_001095741.1	CDS	Shew_3616	NC_009092.1	4312535	4312969	R	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shm:Shewmr7_0154 general secretion pathway protein G; general secretion pathway protein G	complement(4312535..4312969)	Shewanella loihica PV-4	4922402
YP_001095742.1	CDS	Shew_3617	NC_009092.1	4313041	4314261	R	TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: sfr:Sfri_0107 general secretion pathway protein F; general secretion pathway protein F	complement(4313041..4314261)	Shewanella loihica PV-4	4922403
YP_001095743.1	CDS	Shew_3618	NC_009092.1	4314264	4315835	R	KEGG: shm:Shewmr7_0152 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E	complement(4314264..4315835)	Shewanella loihica PV-4	4922404
YP_001095744.1	CDS	Shew_3619	NC_009092.1	4315828	4317951	R	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: shm:Shewmr7_0151 general secretion pathway protein D; general secretion pathway protein D	complement(4315828..4317951)	Shewanella loihica PV-4	4922405
YP_001095745.1	CDS	Shew_3620	NC_009092.1	4317974	4318891	R	TIGRFAM: general secretion pathway protein C; KEGG: she:Shewmr4_0155 general secretion pathway protein C; general secretion pathway protein C	complement(4317974..4318891)	Shewanella loihica PV-4	4922406
YP_001095746.1	CDS	Shew_3621	NC_009092.1	4319154	4319546	D	PFAM: RNA-binding S4 domain protein; KEGG: shm:Shewmr7_0149 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein	4319154..4319546	Shewanella loihica PV-4	4922407
YP_001095747.1	CDS	hslO	NC_009092.1	4319560	4320420	D	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin	4319560..4320420	Shewanella loihica PV-4	4922408
YP_001095748.1	CDS	Shew_3623	NC_009092.1	4320611	4322152	D	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase	4320611..4322152	Shewanella loihica PV-4	4922409
YP_001095749.1	CDS	Shew_3624	NC_009092.1	4322361	4324166	D	KEGG: shm:Shewmr7_0144 hypothetical protein; hypothetical protein	4322361..4324166	Shewanella loihica PV-4	4922410
YP_001095750.1	CDS	Shew_3625	NC_009092.1	4324508	4325734	D	PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter	4324508..4325734	Shewanella loihica PV-4	4922378
YP_001095751.1	CDS	Shew_3626	NC_009092.1	4326037	4326462	D	KEGG: sfr:Sfri_3409 hypothetical protein; hypothetical protein	4326037..4326462	Shewanella loihica PV-4	4922379
YP_001095752.1	CDS	Shew_3627	NC_009092.1	4326459	4326656	D	PFAM: helix-turn-helix domain protein; KEGG: ccr:CC2232 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator	4326459..4326656	Shewanella loihica PV-4	4922380
YP_001095753.1	CDS	Shew_3628	NC_009092.1	4326813	4327295	D	PFAM: MgtC/SapB transporter; KEGG: ilo:IL2442 uncharacterized conserved membrane protein, SapB/MtgC family; MgtC/SapB transporter	4326813..4327295	Shewanella loihica PV-4	4922381
YP_001095754.1	CDS	Shew_3629	NC_009092.1	4327289	4328047	R	KEGG: she:Shewmr4_3805 competence protein ComF; competence protein ComF	complement(4327289..4328047)	Shewanella loihica PV-4	4922382
YP_001095755.1	CDS	Shew_3630	NC_009092.1	4328079	4328858	D	TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3882 BioH protein; bioH protein	4328079..4328858	Shewanella loihica PV-4	4922383
YP_001095756.1	CDS	Shew_3631	NC_009092.1	4328917	4329411	D	KEGG: she:Shewmr4_3807 hypothetical protein; hypothetical protein	4328917..4329411	Shewanella loihica PV-4	4922384
YP_001095757.1	CDS	Shew_3632	NC_009092.1	4329404	4331392	R	PFAM: sulfatase; KEGG: son:SO4628 sulfatase; sulfatase	complement(4329404..4331392)	Shewanella loihica PV-4	4922385
YP_001095758.1	CDS	Shew_3633	NC_009092.1	4331885	4332103	D	hypothetical protein	4331885..4332103	Shewanella loihica PV-4	4922386
YP_001095759.1	CDS	Shew_3634	NC_009092.1	4332191	4334554	R	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein	complement(4332191..4334554)	Shewanella loihica PV-4	4922387
YP_001095760.1	CDS	Shew_3635	NC_009092.1	4334682	4336493	R	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: sdn:Sden_1376 thiamine pyrophosphate enzyme-like TPP binding region; thiamine pyrophosphate binding domain-containing protein	complement(4334682..4336493)	Shewanella loihica PV-4	4922388
YP_001095761.1	CDS	Shew_3636	NC_009092.1	4336728	4337210	R	TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: she:Shewmr4_3810 transcription elongation factor GreB; transcription elongation factor GreB	complement(4336728..4337210)	Shewanella loihica PV-4	4922389
YP_001095762.1	CDS	ompR	NC_009092.1	4337617	4338342	D	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator	4337617..4338342	Shewanella loihica PV-4	4922390
YP_001095763.1	CDS	envZ	NC_009092.1	4338364	4339674	D	membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein	4338364..4339674	Shewanella loihica PV-4	4922391
YP_001095764.1	CDS	Shew_3639	NC_009092.1	4339825	4341783	D	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer	4339825..4341783	Shewanella loihica PV-4	4922173
YP_001095765.1	CDS	Shew_3640	NC_009092.1	4341888	4342733	D	hypothetical protein	4341888..4342733	Shewanella loihica PV-4	4922174
YP_001095766.1	CDS	Shew_3641	NC_009092.1	4342862	4343398	R	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3905 redoxin domain protein; redoxin domain-containing protein	complement(4342862..4343398)	Shewanella loihica PV-4	4922175
YP_001095767.1	CDS	Shew_3642	NC_009092.1	4343468	4344013	R	KEGG: sfr:Sfri_0214 hypothetical protein; hypothetical protein	complement(4343468..4344013)	Shewanella loihica PV-4	4922176
YP_001095768.1	CDS	Shew_3643	NC_009092.1	4344040	4344258	R	KEGG: rso:RS01914 hypothetical protein; hypothetical protein	complement(4344040..4344258)	Shewanella loihica PV-4	4922177
YP_001095769.1	CDS	Shew_3644	NC_009092.1	4344752	4345375	R	hypothetical protein	complement(4344752..4345375)	Shewanella loihica PV-4	4922178
YP_001095770.1	CDS	Shew_3645	NC_009092.1	4345388	4345882	R	hypothetical protein	complement(4345388..4345882)	Shewanella loihica PV-4	4922179
YP_001095771.1	CDS	Shew_3646	NC_009092.1	4348350	4348700	R	hypothetical protein	complement(4348350..4348700)	Shewanella loihica PV-4	4922180
YP_001095772.1	CDS	Shew_3647	NC_009092.1	4348874	4349653	R	PFAM: protein of unknown function DUF548; KEGG: shm:Shewmr7_3921 protein of unknown function DUF548; hypothetical protein	complement(4348874..4349653)	Shewanella loihica PV-4	4922181
YP_001095773.1	CDS	Shew_3648	NC_009092.1	4349816	4350655	D	PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein; hypothetical protein	4349816..4350655	Shewanella loihica PV-4	4922182
YP_001095774.1	CDS	Shew_3649	NC_009092.1	4350684	4351046	R	KEGG: sdn:Sden_1152 hypothetical protein; hypothetical protein	complement(4350684..4351046)	Shewanella loihica PV-4	4922183
YP_001095775.1	CDS	Shew_3650	NC_009092.1	4351052	4351783	R	PFAM: Lytic transglycosylase, catalytic; KEGG: shm:Shewmr7_3923 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic	complement(4351052..4351783)	Shewanella loihica PV-4	4922184
YP_001095776.1	CDS	Shew_3651	NC_009092.1	4351783	4352793	R	KEGG: shm:Shewmr7_3924 hypothetical protein; hypothetical protein	complement(4351783..4352793)	Shewanella loihica PV-4	4922185
YP_001095777.1	CDS	Shew_3652	NC_009092.1	4352810	4353379	R	PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein	complement(4352810..4353379)	Shewanella loihica PV-4	4922186
YP_001095778.1	CDS	Shew_3653	NC_009092.1	4353491	4353730	D	hypothetical protein	4353491..4353730	Shewanella loihica PV-4	4922187
YP_001095779.1	CDS	Shew_3654	NC_009092.1	4354255	4355868	D	PFAM: AbgT putative transporter; KEGG: she:Shewmr4_3833 AbgT putative transporter; AbgT transporter	4354255..4355868	Shewanella loihica PV-4	4921876
YP_001095780.1	CDS	Shew_3655	NC_009092.1	4355955	4356827	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2875 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(4355955..4356827)	Shewanella loihica PV-4	4921877
YP_001095781.1	CDS	Shew_3656	NC_009092.1	4356921	4357424	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_2561 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase	4356921..4357424	Shewanella loihica PV-4	4921878
YP_001095782.1	CDS	Shew_3657	NC_009092.1	4357510	4359549	R	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_3935 oligopeptidase A; oligopeptidase A	complement(4357510..4359549)	Shewanella loihica PV-4	4921879
YP_001095783.1	CDS	Shew_3658	NC_009092.1	4359876	4360652	D	KEGG: son:SO4700 hypothetical protein; hypothetical protein	4359876..4360652	Shewanella loihica PV-4	4921880
YP_001095784.1	CDS	Shew_3659	NC_009092.1	4360773	4361315	D	KEGG: son:SO4701 hypothetical protein; hypothetical protein	4360773..4361315	Shewanella loihica PV-4	4921881
YP_001095785.1	CDS	Shew_3660	NC_009092.1	4361447	4362802	D	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase	4361447..4362802	Shewanella loihica PV-4	4921882
YP_001095786.1	CDS	Shew_3661	NC_009092.1	4363041	4363409	R	hypothetical protein	complement(4363041..4363409)	Shewanella loihica PV-4	4921883
YP_001095787.1	CDS	Shew_3662	NC_009092.1	4363954	4364625	R	hypothetical protein	complement(4363954..4364625)	Shewanella loihica PV-4	4921884
YP_001095788.1	CDS	Shew_3663	NC_009092.1	4364742	4365734	R	hypothetical protein	complement(4364742..4365734)	Shewanella loihica PV-4	4921885
YP_001095789.1	CDS	Shew_3664	NC_009092.1	4366486	4367391	D	TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: vpa:VPA0173 ribosomal protein S6 modification protein; alpha-L-glutamate ligase	4366486..4367391	Shewanella loihica PV-4	4921886
YP_001095790.1	CDS	Shew_3665	NC_009092.1	4367392	4368414	D	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_2033 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase	4367392..4368414	Shewanella loihica PV-4	4921887
YP_001095791.1	CDS	Shew_3666	NC_009092.1	4368445	4368870	D	PFAM: protein of unknown function DUF785; KEGG: sde:Sde_2034 transglutaminase-like; hypothetical protein	4368445..4368870	Shewanella loihica PV-4	4921888
YP_001095792.1	CDS	Shew_3667	NC_009092.1	4368994	4370364	D	PFAM: MgtE integral membrane region; KEGG: vpa:VPA0778 putataive Mg transporter MgtE; MgtE integral membrane protein	4368994..4370364	Shewanella loihica PV-4	4921889
YP_001095793.1	CDS	Shew_3668	NC_009092.1	4370527	4371483	D	PFAM: conserved hypothetical protein 698; KEGG: son:SO4708 hypothetical protein; hypothetical protein	4370527..4371483	Shewanella loihica PV-4	4921890
YP_001095794.1	CDS	Shew_3669	NC_009092.1	4371745	4372470	R	PFAM: ThiJ/PfpI domain protein; KEGG: sil:SPOA0286 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein	complement(4371745..4372470)	Shewanella loihica PV-4	4921753
YP_001095795.1	CDS	Shew_3670	NC_009092.1	4372600	4373805	R	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3954 metal dependent phosphohydrolase; metal dependent phosphohydrolase	complement(4372600..4373805)	Shewanella loihica PV-4	4921754
YP_001095796.1	CDS	Shew_3671	NC_009092.1	4374012	4374218	R	KEGG: shm:Shewmr7_3955 hypothetical protein; hypothetical protein	complement(4374012..4374218)	Shewanella loihica PV-4	4921755
YP_001095797.1	CDS	Shew_3672	NC_009092.1	4374251	4375006	R	KEGG: shm:Shewmr7_3956 hypothetical protein; hypothetical protein	complement(4374251..4375006)	Shewanella loihica PV-4	4921756
YP_001095798.1	CDS	Shew_3673	NC_009092.1	4375009	4375548	R	KEGG: shm:Shewmr7_3957 hypothetical protein; hypothetical protein	complement(4375009..4375548)	Shewanella loihica PV-4	4921757
YP_001095799.1	CDS	Shew_3674	NC_009092.1	4375563	4376216	R	PFAM: cobalt transport protein; KEGG: she:Shewmr4_3865 cobalt transport protein; cobalt transport protein	complement(4375563..4376216)	Shewanella loihica PV-4	4921758
YP_001095800.1	CDS	Shew_3675	NC_009092.1	4376224	4377588	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4712 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein	complement(4376224..4377588)	Shewanella loihica PV-4	4921759
YP_001095801.1	CDS	Shew_3676	NC_009092.1	4377598	4379805	R	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3960 TonB-dependent receptor, plug; TonB-dependent receptor, plug	complement(4377598..4379805)	Shewanella loihica PV-4	4921760
YP_001095802.1	CDS	Shew_3677	NC_009092.1	4380196	4381554	D	TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: sfr:Sfri_3913 isochorismate synthases; isochorismate synthase	4380196..4381554	Shewanella loihica PV-4	4921761
YP_001095803.1	CDS	Shew_3678	NC_009092.1	4381556	4382311	R	KEGG: son:SO4714 hypothetical protein; hypothetical protein	complement(4381556..4382311)	Shewanella loihica PV-4	4921762
YP_001095804.1	CDS	Shew_3679	NC_009092.1	4382549	4383217	D	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein	4382549..4383217	Shewanella loihica PV-4	4921763
YP_001095805.1	CDS	Shew_3680	NC_009092.1	4383298	4383759	D	PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family; N-acetyltransferase GCN5	4383298..4383759	Shewanella loihica PV-4	4921764
YP_001095806.1	CDS	Shew_3681	NC_009092.1	4384022	4386163	R	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3872 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase	complement(4384022..4386163)	Shewanella loihica PV-4	4921765
YP_001095807.1	CDS	Shew_3682	NC_009092.1	4386166	4387596	R	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3966 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator	complement(4386166..4387596)	Shewanella loihica PV-4	4921766
YP_001095808.1	CDS	Shew_3683	NC_009092.1	4387826	4388638	D	KEGG: she:Shewmr4_3874 extracellular solute-binding protein, family 1; extracellular solute-binding protein	4387826..4388638	Shewanella loihica PV-4	4921607
YP_001095809.1	CDS	Shew_3684	NC_009092.1	4388635	4389342	D	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein	4388635..4389342	Shewanella loihica PV-4	4921608
YP_001095810.1	CDS	Shew_3685	NC_009092.1	4389345	4390061	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter-like protein	4389345..4390061	Shewanella loihica PV-4	4921609
YP_001095811.1	CDS	Shew_3686	NC_009092.1	4390045	4390635	D	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdopterin-guanine dinucleotide biosynthesis protein MobA	4390045..4390635	Shewanella loihica PV-4	4921610
YP_001095812.1	CDS	Shew_3687	NC_009092.1	4390650	4392449	D	TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: she:Shewmr4_3878 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA	4390650..4392449	Shewanella loihica PV-4	4921611
YP_001095813.1	CDS	Shew_3688	NC_009092.1	4392509	4393495	D	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A	4392509..4393495	Shewanella loihica PV-4	4921612
YP_001095814.1	CDS	Shew_3689	NC_009092.1	4393559	4394011	D	KEGG: shm:Shewmr7_3973 hypothetical protein; hypothetical protein	4393559..4394011	Shewanella loihica PV-4	4921613
YP_001095815.1	CDS	Shew_3690	NC_009092.1	4394035	4394850	D	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase	4394035..4394850	Shewanella loihica PV-4	4921614
YP_001095816.1	CDS	Shew_3691	NC_009092.1	4395002	4396507	R	KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein	complement(4395002..4396507)	Shewanella loihica PV-4	4921615
YP_001095817.1	CDS	coaD	NC_009092.1	4396518	4396994	R	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase	complement(4396518..4396994)	Shewanella loihica PV-4	4921616
YP_001095818.1	CDS	Shew_3693	NC_009092.1	4397285	4398310	D	KEGG: sfr:Sfri_3928 ADP-heptose--lipooligosaccharide heptosyltransferase III; ADP-heptose--LPS heptosyltransferase III	4397285..4398310	Shewanella loihica PV-4	4921617
YP_001095819.1	CDS	Shew_3694	NC_009092.1	4398356	4399309	D	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sfr:Sfri_3929 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase	4398356..4399309	Shewanella loihica PV-4	4921618
YP_001095820.1	CDS	Shew_3695	NC_009092.1	4399371	4399763	R	TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: sfr:Sfri_3930 cytidyltransferase-related domain protein; cytidyltransferase-like protein	complement(4399371..4399763)	Shewanella loihica PV-4	4921619
YP_001095821.1	CDS	Shew_3696	NC_009092.1	4399760	4400776	R	PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sfr:Sfri_3931 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase	complement(4399760..4400776)	Shewanella loihica PV-4	4921620
YP_001095822.1	CDS	Shew_3697	NC_009092.1	4401146	4402318	D	PFAM: glycosyl transferase, family 9; KEGG: sfr:Sfri_3932 ADP-heptose:LPS heptosyltransferase-like protein; glycosyl transferase family protein	4401146..4402318	Shewanella loihica PV-4	4921621
YP_001095823.1	CDS	Shew_3698	NC_009092.1	4402335	4403189	D	KEGG: sfr:Sfri_3933 glycosyl transferase, family 8; glycosyl transferase family protein	4402335..4403189	Shewanella loihica PV-4	4921210
YP_001095824.1	CDS	Shew_3699	NC_009092.1	4403439	4404230	D	PFAM: glycosyl transferase, family 2; KEGG: vpa:VP0192 hypothetical protein; glycosyl transferase family protein	4403439..4404230	Shewanella loihica PV-4	4921211
YP_001095825.1	CDS	Shew_3700	NC_009092.1	4404227	4405327	R	PFAM: glycosyl transferase, group 1; KEGG: she:Shewmr4_3895 glycosyl transferase, group 1; group 1 glycosyl transferase	complement(4404227..4405327)	Shewanella loihica PV-4	4921212
YP_001095826.1	CDS	Shew_3701	NC_009092.1	4405317	4406393	R	KEGG: pha:PSHAa2321 hypothetical protein; hypothetical protein	complement(4405317..4406393)	Shewanella loihica PV-4	4921213
YP_001095827.1	CDS	Shew_3702	NC_009092.1	4406512	4407591	R	PFAM: glycosyl transferase, family 9; KEGG: shm:Shewmr7_3988 glycosyl transferase, family 9; glycosyl transferase family protein	complement(4406512..4407591)	Shewanella loihica PV-4	4921214
YP_001095828.1	CDS	Shew_3703	NC_009092.1	4407727	4408275	D	KEGG: aeh:Mlg_2320 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase	4407727..4408275	Shewanella loihica PV-4	4921215
YP_001095829.1	CDS	Shew_3704	NC_009092.1	4408268	4409338	D	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pfo:Pfl_0701 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase	4408268..4409338	Shewanella loihica PV-4	4921216
YP_001095830.1	CDS	Shew_3705	NC_009092.1	4409367	4410296	D	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: sdn:Sden_2549 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase	4409367..4410296	Shewanella loihica PV-4	4921217
YP_001095831.1	CDS	Shew_3706	NC_009092.1	4410362	4411087	D	catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase	4410362..4411087	Shewanella loihica PV-4	4921218
YP_001095832.1	CDS	Shew_3707	NC_009092.1	4411115	4412380	R	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: she:Shewmr4_3898 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase	complement(4411115..4412380)	Shewanella loihica PV-4	4921219
YP_001095833.1	CDS	Shew_3708	NC_009092.1	4412666	4413319	D	PFAM: regulatory protein, TetR; KEGG: sdn:Sden_3614 regulatory protein, TetR; TetR family transcriptional regulator	4412666..4413319	Shewanella loihica PV-4	4921220
YP_001095834.1	CDS	Shew_3709	NC_009092.1	4413736	4414929	D	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase	4413736..4414929	Shewanella loihica PV-4	4921221
YP_001095835.1	CDS	tdh	NC_009092.1	4414940	4415965	D	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase	4414940..4415965	Shewanella loihica PV-4	4921222
YP_001095836.1	CDS	Shew_3711	NC_009092.1	4416054	4416359	D	PFAM: Rhodanese domain protein; KEGG: sdn:Sden_3617 rhodanese-like protein; rhodanese domain-containing protein	4416054..4416359	Shewanella loihica PV-4	4921223
YP_001095837.1	CDS	Shew_3712	NC_009092.1	4416377	4417213	D	PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein; rhomboid family protein	4416377..4417213	Shewanella loihica PV-4	4921069
YP_001095838.1	CDS	Shew_3713	NC_009092.1	4417346	4417999	R	PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain	complement(4417346..4417999)	Shewanella loihica PV-4	4921070
YP_001095839.1	CDS	Shew_3714	NC_009092.1	4418346	4421138	D	KEGG: shm:Shewmr7_3997 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I	4418346..4421138	Shewanella loihica PV-4	4921071
YP_001095840.1	CDS	engB	NC_009092.1	4421920	4422576	R	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC	complement(4421920..4422576)	Shewanella loihica PV-4	4921072
YP_001095841.1	CDS	Shew_3716	NC_009092.1	4422745	4423365	D	PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I	4422745..4423365	Shewanella loihica PV-4	4921073
YP_001095842.1	CDS	Shew_3717	NC_009092.1	4424140	4424808	D	KEGG: son:SO4727 hypothetical protein; hypothetical protein	4424140..4424808	Shewanella loihica PV-4	4921074
YP_001095843.1	CDS	Shew_3718	NC_009092.1	4424856	4425389	D	KEGG: son:SO4728 hypothetical protein; hypothetical protein	4424856..4425389	Shewanella loihica PV-4	4921075
YP_001095844.1	CDS	Shew_3719	NC_009092.1	4425483	4425950	D	KEGG: she:Shewmr4_3910 hypothetical protein; hypothetical protein	4425483..4425950	Shewanella loihica PV-4	4921076
YP_001095845.1	CDS	Shew_3720	NC_009092.1	4426159	4427499	D	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase	4426159..4427499	Shewanella loihica PV-4	4921077
YP_001095846.1	CDS	Shew_3721	NC_009092.1	4427555	4428550	R	catalyzes the formation of inosine from adenosine; adenosine deaminase	complement(4427555..4428550)	Shewanella loihica PV-4	4921078
YP_001095847.1	CDS	Shew_3722	NC_009092.1	4428785	4430569	D	PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein	4428785..4430569	Shewanella loihica PV-4	4921079
YP_001095848.1	CDS	Shew_3723	NC_009092.1	4430676	4431665	D	PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase	4430676..4431665	Shewanella loihica PV-4	4921080
YP_001095849.1	CDS	Shew_3724	NC_009092.1	4431654	4434146	R	KEGG: sfr:Sfri_0038 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	complement(4431654..4434146)	Shewanella loihica PV-4	4921081
YP_001095850.1	CDS	Shew_3725	NC_009092.1	4440161	4440718	D	KEGG: she:Shewmr4_0039 carbonic anhydrase, family 3; carbonic anhydrase	4440161..4440718	Shewanella loihica PV-4	4923846
YP_001095851.1	CDS	Shew_3726	NC_009092.1	4440853	4441125	R	PFAM: protein of unknown function DUF1488; KEGG: vpa:VP3032 hypothetical protein; hypothetical protein	complement(4440853..4441125)	Shewanella loihica PV-4	4921083
YP_001095852.1	CDS	aroE	NC_009092.1	4441164	4442078	R	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase	complement(4441164..4442078)	Shewanella loihica PV-4	4921021
YP_001095853.1	CDS	Shew_3728	NC_009092.1	4442180	4442608	D	PFAM: globin; KEGG: sdn:Sden_0031 globin; globin	4442180..4442608	Shewanella loihica PV-4	4921022
YP_001095854.1	CDS	Shew_3729	NC_009092.1	4442665	4443576	R	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase	complement(4442665..4443576)	Shewanella loihica PV-4	4921023
YP_001095855.1	CDS	Shew_3730	NC_009092.1	4443595	4444152	R	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein	complement(4443595..4444152)	Shewanella loihica PV-4	4921024
YP_001095856.1	CDS	Shew_3731	NC_009092.1	4444254	4444817	R	PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: shm:Shewmr7_0031 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein	complement(4444254..4444817)	Shewanella loihica PV-4	4921025
YP_001095857.1	CDS	Shew_3732	NC_009092.1	4444955	4446766	D	PFAM: Peptidase M9A, collagenase C-terminal domain protein; KEGG: cps:CPS_2237 microbial collagenase; collagenase	4444955..4446766	Shewanella loihica PV-4	4921026
YP_001095858.1	CDS	Shew_3733	NC_009092.1	4446824	4447297	R	PFAM: protein of unknown function DUF494; KEGG: sfr:Sfri_0027 protein of unknown function DUF494; hypothetical protein	complement(4446824..4447297)	Shewanella loihica PV-4	4921027
YP_001095859.1	CDS	Shew_3734	NC_009092.1	4447300	4448319	R	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative; DNA protecting protein DprA	complement(4447300..4448319)	Shewanella loihica PV-4	4921028
YP_001095860.1	CDS	Shew_3735	NC_009092.1	4448408	4449505	R	PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein; peptidoglycan-binding LysM	complement(4448408..4449505)	Shewanella loihica PV-4	4921029
YP_001095861.1	CDS	def	NC_009092.1	4449631	4450143	D	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase	4449631..4450143	Shewanella loihica PV-4	4921030
YP_001095862.1	CDS	Shew_3737	NC_009092.1	4450151	4451125	D	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfr:Sfri_0023 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase	4450151..4451125	Shewanella loihica PV-4	4921031
YP_001095863.1	CDS	Shew_3738	NC_009092.1	4451122	4452405	D	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: she:Shewmr4_0027 sun protein; sun protein	4451122..4452405	Shewanella loihica PV-4	4921032
YP_001095864.1	CDS	trkA	NC_009092.1	4452415	4453824	D	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein	4452415..4453824	Shewanella loihica PV-4	4921033
YP_001095865.1	CDS	Shew_3740	NC_009092.1	4453855	4455297	D	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0023 potassium uptake protein, TrkH family; TrkH family potassium uptake protein	4453855..4455297	Shewanella loihica PV-4	4921034
YP_001095866.1	CDS	Shew_3741	NC_009092.1	4455319	4456515	R	PFAM: protein of unknown function DUF890; KEGG: she:Shewmr4_0128 protein of unknown function DUF890; putative SAM-dependent methyltransferase	complement(4455319..4456515)	Shewanella loihica PV-4	4920916
YP_001095867.1	CDS	Shew_3742	NC_009092.1	4456560	4456967	R	PFAM: flagellar basal body-associated protein FliL; KEGG: sfr:Sfri_0049 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein	complement(4456560..4456967)	Shewanella loihica PV-4	4920917
YP_001095868.1	CDS	Shew_3743	NC_009092.1	4457143	4457709	D	PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase	4457143..4457709	Shewanella loihica PV-4	4920918
YP_001095869.1	CDS	Shew_3744	NC_009092.1	4457740	4460595	R	PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: sfr:Sfri_0047 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A	complement(4457740..4460595)	Shewanella loihica PV-4	4920919
YP_001095870.1	CDS	Shew_3745	NC_009092.1	4460984	4463200	R	PFAM: glycoside hydrolase, family 37; KEGG: cpr:CPR_0360 cell wall surface anchor family protein; glycoside hydrolase	complement(4460984..4463200)	Shewanella loihica PV-4	4920920
YP_001095871.1	CDS	Shew_3746	NC_009092.1	4463404	4463997	R	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein	complement(4463404..4463997)	Shewanella loihica PV-4	4920921
YP_001095872.1	CDS	Shew_3747	NC_009092.1	4464226	4465848	D	KEGG: she:Shewmr4_0122 hypothetical protein; hypothetical protein	4464226..4465848	Shewanella loihica PV-4	4920922
YP_001095873.1	CDS	Shew_3748	NC_009092.1	4465911	4466717	D	PFAM: protein of unknown function DUF833; KEGG: she:Shewmr4_0121 protein of unknown function DUF833; hypothetical protein	4465911..4466717	Shewanella loihica PV-4	4920923
YP_001095874.1	CDS	Shew_3749	NC_009092.1	4466714	4467136	R	KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein	complement(4466714..4467136)	Shewanella loihica PV-4	4920924
YP_001095875.1	CDS	Shew_3750	NC_009092.1	4467245	4467796	D	PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_0119 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase	4467245..4467796	Shewanella loihica PV-4	4920925
YP_001095876.1	CDS	Shew_3751	NC_009092.1	4467872	4468495	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_0113 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	4467872..4468495	Shewanella loihica PV-4	4920926
YP_001095877.1	CDS	Shew_3752	NC_009092.1	4468492	4469742	R	PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0112 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS	complement(4468492..4469742)	Shewanella loihica PV-4	4920927
YP_001095878.1	CDS	Shew_3753	NC_009092.1	4469926	4470450	D	KEGG: son:SO0120 hypothetical protein; hypothetical protein	4469926..4470450	Shewanella loihica PV-4	4920928
YP_001095879.1	CDS	Shew_3754	NC_009092.1	4470544	4471221	D	KEGG: sfr:Sfri_3611 hypothetical protein; hypothetical protein	4470544..4471221	Shewanella loihica PV-4	4920929
YP_001095880.1	CDS	Shew_3755	NC_009092.1	4471287	4471766	R	PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_1838 thioesterase superfamily protein; thioesterase superfamily protein	complement(4471287..4471766)	Shewanella loihica PV-4	4920930
YP_001095881.1	CDS	Shew_3756	NC_009092.1	4471917	4473449	R	catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase	complement(4471917..4473449)	Shewanella loihica PV-4	4920748
YP_001095882.1	CDS	Shew_3757	NC_009092.1	4473477	4475147	R	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase	complement(4473477..4475147)	Shewanella loihica PV-4	4920749
YP_001095883.1	CDS	Shew_3758	NC_009092.1	4475271	4475978	R	TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: she:Shewmr4_0098 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor	complement(4475271..4475978)	Shewanella loihica PV-4	4920750
YP_001095884.1	CDS	Shew_3759	NC_009092.1	4476162	4477388	D	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase	4476162..4477388	Shewanella loihica PV-4	4920751
YP_001095885.1	CDS	Shew_3760	NC_009092.1	4477818	4479446	D	PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3526 kap P-loop; KAP P-loop domain-containing protein	4477818..4479446	Shewanella loihica PV-4	4920752
YP_001095886.1	CDS	Shew_3761	NC_009092.1	4479829	4480053	R	KEGG: mag:amb2065 hypothetical protein; hypothetical protein	complement(4479829..4480053)	Shewanella loihica PV-4	4920753
YP_001095887.1	CDS	Shew_3762	NC_009092.1	4480367	4481443	D	hypothetical protein	4480367..4481443	Shewanella loihica PV-4	4920754
YP_001095888.1	CDS	Shew_3763	NC_009092.1	4481475	4482005	R	PFAM: regulatory protein, LuxR; KEGG: she:Shewmr4_3855 transcriptional regulator, LuxR family; LuxR family transcriptional regulator	complement(4481475..4482005)	Shewanella loihica PV-4	4920755
YP_001095889.1	CDS	Shew_3764	NC_009092.1	4482242	4483474	D	KEGG: shm:Shewmr7_3949 hypothetical protein; hypothetical protein	4482242..4483474	Shewanella loihica PV-4	4920756
YP_001095890.1	CDS	Shew_3765	NC_009092.1	4483471	4484511	D	KEGG: shm:Shewmr7_3950 hypothetical protein; hypothetical protein	4483471..4484511	Shewanella loihica PV-4	4920757
YP_001095891.1	CDS	Shew_3766	NC_009092.1	4484513	4487566	D	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3951 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein	4484513..4487566	Shewanella loihica PV-4	4920758
YP_001095892.1	CDS	Shew_3767	NC_009092.1	4487563	4487868	D	KEGG: shm:Shewmr7_3952 hypothetical protein; hypothetical protein	4487563..4487868	Shewanella loihica PV-4	4920759
YP_001095893.1	CDS	Shew_3768	NC_009092.1	4487925	4488872	R	KEGG: she:Shewmr4_0541 hypothetical protein; hypothetical protein	complement(4487925..4488872)	Shewanella loihica PV-4	4920760
YP_001095894.1	CDS	Shew_3769	NC_009092.1	4489146	4490297	R	KEGG: sfr:Sfri_3965 hypothetical protein; hypothetical protein	complement(4489146..4490297)	Shewanella loihica PV-4	4920761
YP_001095895.1	CDS	Shew_3770	NC_009092.1	4490341	4491147	R	PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfr:Sfri_3249 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein	complement(4490341..4491147)	Shewanella loihica PV-4	4920762
YP_001095896.1	CDS	Shew_3771	NC_009092.1	4491388	4492065	D	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	4491388..4492065	Shewanella loihica PV-4	4924191
YP_001095897.1	CDS	Shew_3772	NC_009092.1	4492259	4492687	D	PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_0084 thioesterase superfamily protein; thioesterase superfamily protein	4492259..4492687	Shewanella loihica PV-4	4924192
YP_001095898.1	CDS	Shew_3773	NC_009092.1	4492705	4493745	R	KEGG: vfi:VFA0508 hypothetical protein; hypothetical protein	complement(4492705..4493745)	Shewanella loihica PV-4	4924193
YP_001095899.1	CDS	Shew_3774	NC_009092.1	4493765	4494091	D	KEGG: she:Shewmr4_0083 hypothetical protein; acetyltransferase	4493765..4494091	Shewanella loihica PV-4	4924194
YP_001095900.1	CDS	Shew_3775	NC_009092.1	4494097	4494501	R	PFAM: thioesterase superfamily protein; KEGG: sdn:Sden_0073 thioesterase superfamily; thioesterase superfamily protein	complement(4494097..4494501)	Shewanella loihica PV-4	4924195
YP_001095901.1	CDS	Shew_3776	NC_009092.1	4494661	4496457	R	PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_0076 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase	complement(4494661..4496457)	Shewanella loihica PV-4	4924196
YP_001095902.1	CDS	Shew_3777	NC_009092.1	4496585	4497847	R	KEGG: son:SO0074 hypothetical protein; hypothetical protein	complement(4496585..4497847)	Shewanella loihica PV-4	4924197
YP_001095903.1	CDS	Shew_3778	NC_009092.1	4497844	4498695	R	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0074 ABC transporter-related protein; ABC transporter-like protein	complement(4497844..4498695)	Shewanella loihica PV-4	4924198
YP_001095904.1	CDS	Shew_3779	NC_009092.1	4498704	4499084	R	PFAM: regulatory protein GntR, HTH; KEGG: sfr:Sfri_3976 transcriptional regulator, GntR family protein; GntR family transcriptional regulator	complement(4498704..4499084)	Shewanella loihica PV-4	4924199
YP_001095905.1	CDS	Shew_3780	NC_009092.1	4499200	4500753	D	PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; TAP domain-containing protein	4499200..4500753	Shewanella loihica PV-4	4924200
YP_001095906.1	CDS	Shew_3781	NC_009092.1	4500746	4501480	D	PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein	4500746..4501480	Shewanella loihica PV-4	4924201
YP_001095907.1	CDS	Shew_3782	NC_009092.1	4501477	4502613	D	PFAM: ABC-2 type transporter; KEGG: sfr:Sfri_3979 ABC-2 type transporter; ABC transporter	4501477..4502613	Shewanella loihica PV-4	4924202
YP_001095908.1	CDS	Shew_3783	NC_009092.1	4502669	4502917	D	KEGG: sfr:Sfri_3980 hypothetical protein; hypothetical protein	4502669..4502917	Shewanella loihica PV-4	4924203
YP_001095909.1	CDS	Shew_3784	NC_009092.1	4503119	4503370	D	hypothetical protein	4503119..4503370	Shewanella loihica PV-4	4924204
YP_001095910.1	CDS	Shew_3785	NC_009092.1	4503475	4504482	R	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: shm:Shewmr7_0068 transcriptional regulator, AraC family; AraC family transcriptional regulator	complement(4503475..4504482)	Shewanella loihica PV-4	4924176
YP_001095911.1	CDS	Shew_3786	NC_009092.1	4504608	4504787	D	KEGG: shm:Shewmr7_0067 hypothetical protein; hypothetical protein	4504608..4504787	Shewanella loihica PV-4	4924177
YP_001095912.1	CDS	mogA	NC_009092.1	4504858	4505391	R	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA	complement(4504858..4505391)	Shewanella loihica PV-4	4924178
YP_001095913.1	CDS	Shew_3788	NC_009092.1	4505567	4508695	R	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: hch:HCH_00809 signal transduction histidine kinase; multi-sensor hybrid histidine kinase	complement(4505567..4508695)	Shewanella loihica PV-4	4924179
YP_001095914.1	CDS	Shew_3789	NC_009092.1	4508699	4509661	R	KEGG: sde:Sde_0403 ABC-type nitrate/sulfonate/bicarbonate transport system protein; ABC-type nitrate/sulfonate/bicarbonate transport system protein	complement(4508699..4509661)	Shewanella loihica PV-4	4924180
YP_001095915.1	CDS	Shew_3790	NC_009092.1	4509675	4510577	R	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain); response regulator receiver modulated diguanylate cyclase	complement(4509675..4510577)	Shewanella loihica PV-4	4924181
YP_001095916.1	CDS	Shew_3791	NC_009092.1	4510807	4511463	R	hypothetical protein	complement(4510807..4511463)	Shewanella loihica PV-4	4924182
YP_001095917.1	CDS	Shew_3792	NC_009092.1	4512243	4512614	R	hypothetical protein	complement(4512243..4512614)	Shewanella loihica PV-4	4924183
YP_001095918.1	CDS	Shew_3793	NC_009092.1	4512647	4513786	R	KEGG: cps:CPS_0419 hypothetical protein; hypothetical protein	complement(4512647..4513786)	Shewanella loihica PV-4	4924184
YP_001095919.1	CDS	Shew_3794	NC_009092.1	4513866	4514213	R	hypothetical protein	complement(4513866..4514213)	Shewanella loihica PV-4	4924185
YP_001095920.1	CDS	Shew_3795	NC_009092.1	4514334	4514756	R	PFAM: transmembrane pair domain protein; KEGG: par:Psyc_0621 hypothetical protein; transmembrane pair domain-containing protein	complement(4514334..4514756)	Shewanella loihica PV-4	4924186
YP_001095921.1	CDS	Shew_3796	NC_009092.1	4514854	4517982	R	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: vpa:VPA0471 putative multidrug efflux membrane fusion protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein	complement(4514854..4517982)	Shewanella loihica PV-4	4924187
YP_001095922.1	CDS	Shew_3797	NC_009092.1	4517989	4519119	R	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vpa:VPA1191 putative multidrug efflux membrane fusion protein; RND family efflux transporter MFP subunit	complement(4517989..4519119)	Shewanella loihica PV-4	4924188
YP_001095923.1	CDS	Shew_3798	NC_009092.1	4519559	4520431	R	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_0510 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(4519559..4520431)	Shewanella loihica PV-4	4924189
YP_001095924.1	CDS	Shew_3799	NC_009092.1	4520536	4521231	D	KEGG: ppr:PBPRB0103 hypothetical protein; hypothetical protein	4520536..4521231	Shewanella loihica PV-4	4924190
YP_001095925.1	CDS	Shew_3800	NC_009092.1	4521294	4522394	R	KEGG: nar:Saro_2604 major facilitator superfamily MFS_1; hypothetical protein	complement(4521294..4522394)	Shewanella loihica PV-4	4924154
YP_001095926.1	CDS	Shew_3801	NC_009092.1	4522682	4524925	R	PFAM: peptidase S41; KEGG: bth:BT3291 hypothetical protein; peptidase S41	complement(4522682..4524925)	Shewanella loihica PV-4	4924155
YP_001095927.1	CDS	Shew_3802	NC_009092.1	4525075	4526259	R	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0049 HI0933 family protein; hypothetical protein	complement(4525075..4526259)	Shewanella loihica PV-4	4924156
YP_001095928.1	CDS	gpsA	NC_009092.1	4526514	4527533	R	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	complement(4526514..4527533)	Shewanella loihica PV-4	4924157
YP_001095929.1	CDS	Shew_3804	NC_009092.1	4527540	4528028	R	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB	complement(4527540..4528028)	Shewanella loihica PV-4	4924158
YP_001095930.1	CDS	Shew_3805	NC_009092.1	4528236	4528748	R	PFAM: Rhodanese domain protein; KEGG: sfr:Sfri_4020 rhodanese domain protein; rhodanese domain-containing protein	complement(4528236..4528748)	Shewanella loihica PV-4	4924159
YP_001095931.1	CDS	Shew_3806	NC_009092.1	4528912	4530456	D	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase	4528912..4530456	Shewanella loihica PV-4	4924160
YP_001095932.1	CDS	Shew_3807	NC_009092.1	4530515	4531600	D	PFAM: peptidase M23B; KEGG: shm:Shewmr7_0042 peptidase M23B; peptidase M23B	4530515..4531600	Shewanella loihica PV-4	4924161
YP_001095933.1	CDS	Shew_3808	NC_009092.1	4531636	4532841	D	KEGG: she:Shewmr4_0043 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease	4531636..4532841	Shewanella loihica PV-4	4924162
YP_001095934.1	CDS	Shew_3809	NC_009092.1	4532857	4533612	D	PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein	4532857..4533612	Shewanella loihica PV-4	4924163
YP_001095935.1	CDS	Shew_3810	NC_009092.1	4533634	4534086	R	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: she:Shewmr4_0041 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator	complement(4533634..4534086)	Shewanella loihica PV-4	4924164
YP_001095936.1	CDS	Shew_3811	NC_009092.1	4534097	4534351	R	PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_3703 protein of unknown function UPF0153; hypothetical protein	complement(4534097..4534351)	Shewanella loihica PV-4	4924165
YP_001095937.1	CDS	Shew_3812	NC_009092.1	4540595	4542022	R	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3916 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin	complement(4540595..4542022)	Shewanella loihica PV-4	4923849
YP_001095938.1	CDS	Shew_3813	NC_009092.1	4542111	4542464	D	KEGG: sfr:Sfri_4029 hypothetical protein; hypothetical protein	4542111..4542464	Shewanella loihica PV-4	4924167
YP_001095939.1	CDS	Shew_3814	NC_009092.1	4542586	4543488	D	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase	4542586..4543488	Shewanella loihica PV-4	4922819
YP_001095940.1	CDS	Shew_3815	NC_009092.1	4543723	4543914	D	KEGG: son:SO4740 hypothetical protein; hypothetical protein	4543723..4543914	Shewanella loihica PV-4	4922820
YP_001095941.1	CDS	Shew_3816	NC_009092.1	4544107	4544649	D	KEGG: shm:Shewmr7_0816 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein	4544107..4544649	Shewanella loihica PV-4	4922821
YP_001095942.1	CDS	Shew_3817	NC_009092.1	4544752	4545102	R	KEGG: sfr:Sfri_0213 likely secreted protein containing plastocyanin domain; plastocyanin domain-containing protein	complement(4544752..4545102)	Shewanella loihica PV-4	4922822
YP_001095943.1	CDS	Shew_3818	NC_009092.1	4545112	4547355	R	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_0212 copper-translocating P-type ATPase; copper-translocating P-type ATPase	complement(4545112..4547355)	Shewanella loihica PV-4	4922823
YP_001095944.1	CDS	Shew_3819	NC_009092.1	4547358	4547819	R	PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_0211 transcriptional regulator, MerR family protein; MerR family transcriptional regulator	complement(4547358..4547819)	Shewanella loihica PV-4	4922824
YP_001095945.1	CDS	Shew_3820	NC_009092.1	4548184	4548615	R	hypothetical protein	complement(4548184..4548615)	Shewanella loihica PV-4	4922825
YP_001095946.1	CDS	Shew_3821	NC_009092.1	4548685	4551297	R	KEGG: she:Shewmr4_2521 hypothetical protein; hypothetical protein	complement(4548685..4551297)	Shewanella loihica PV-4	4922826
YP_001095947.1	CDS	Shew_3822	NC_009092.1	4551316	4552284	R	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2522 AAA ATPase, central domain protein; ATPase central domain-containing protein	complement(4551316..4552284)	Shewanella loihica PV-4	4922827
YP_001095948.1	CDS	Shew_3823	NC_009092.1	4552430	4552723	D	PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator	4552430..4552723	Shewanella loihica PV-4	4922828
YP_001095949.1	CDS	Shew_3824	NC_009092.1	4552754	4554352	R	KEGG: ilo:IL2609 transposon Tn7 transposition transposition regulatory protein TnsE; hypothetical protein	complement(4552754..4554352)	Shewanella loihica PV-4	4922829
YP_001095950.1	CDS	Shew_3825	NC_009092.1	4554310	4555854	R	KEGG: ssn:SSO_3894 transposition protein; transposition protein	complement(4554310..4555854)	Shewanella loihica PV-4	4922830
YP_001095951.1	CDS	Shew_3826	NC_009092.1	4555855	4557492	R	KEGG: ilo:IL2611 transposon Tn7 transposition protein TnsC; transposon Tn7 transposition protein TnsC	complement(4555855..4557492)	Shewanella loihica PV-4	4922831
YP_001095952.1	CDS	Shew_3827	NC_009092.1	4557489	4559579	R	KEGG: ilo:IL2612 transposon Tn7 transposition protein TnsB; transposon Tn7 transposition protein TnsB	complement(4557489..4559579)	Shewanella loihica PV-4	4922832
YP_001095953.1	CDS	Shew_3828	NC_009092.1	4559563	4560390	R	KEGG: ilo:IL2613 transposon Tn7 transposition protein TnsA; transposon Tn7 transposition protein TnsA	complement(4559563..4560390)	Shewanella loihica PV-4	4922833
YP_001095954.1	CDS	Shew_3829	NC_009092.1	4560548	4560856	D	PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein	4560548..4560856	Shewanella loihica PV-4	4924236
YP_001095955.1	CDS	Shew_3830	NC_009092.1	4560988	4561722	D	PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit	4560988..4561722	Shewanella loihica PV-4	4924237
YP_001095956.1	CDS	Shew_3832	NC_009092.1	4562232	4564238	D	KEGG: spt:SPA1006 putative hydrolase; putative hydrolase	4562232..4564238	Shewanella loihica PV-4	4923850
YP_001095957.1	CDS	Shew_3835	NC_009092.1	4565624	4565800	R	KEGG: ppr:PBPRA1825 hypothetical ISPpu15, transposase Orf2; ISPpu15, transposase Orf2	complement(4565624..4565800)	Shewanella loihica PV-4	4923852
YP_001095958.1	CDS	Shew_3836	NC_009092.1	4565860	4566213	R	PFAM: IS66 Orf2 family protein; KEGG: ppr:PBPRA1824 hypothetical protein; IS66 Orf2 family protein	complement(4565860..4566213)	Shewanella loihica PV-4	4924240
YP_001095959.1	CDS	Shew_3837	NC_009092.1	4566210	4566530	R	KEGG: vvy:VV2228 hypothetical protein; hypothetical protein	complement(4566210..4566530)	Shewanella loihica PV-4	4924241
YP_001095960.1	CDS	Shew_3838	NC_009092.1	4566687	4567667	R	PFAM: transposase, IS4 family protein; KEGG: vch:VCA0472 IS5 transposase; transposase, IS4 family protein	complement(4566687..4567667)	Shewanella loihica PV-4	4924242
YP_001095961.1	CDS	Shew_3839	NC_009092.1	4569026	4570855	R	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase	complement(4569026..4570855)	Shewanella loihica PV-4	4924243
YP_001095962.1	CDS	Shew_3840	NC_009092.1	4570891	4571661	R	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: shm:Shewmr7_4013 transcriptional regulator, DeoR family; DeoR family transcriptional regulator	complement(4570891..4571661)	Shewanella loihica PV-4	4924244
YP_001095963.1	CDS	Shew_3841	NC_009092.1	4571807	4573945	R	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3922 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor	complement(4571807..4573945)	Shewanella loihica PV-4	4924245
YP_001095964.1	CDS	Shew_3842	NC_009092.1	4574156	4575520	R	KEGG: sfr:Sfri_4043 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase	complement(4574156..4575520)	Shewanella loihica PV-4	4924246
YP_001095965.1	CDS	Shew_3843	NC_009092.1	4575632	4575985	R	PFAM: DsrE family protein; KEGG: ppr:PBPRB1553 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE family protein	complement(4575632..4575985)	Shewanella loihica PV-4	4924247
YP_001095966.1	CDS	atpC	NC_009092.1	4576150	4576578	R	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon	complement(4576150..4576578)	Shewanella loihica PV-4	4924248
YP_001095967.1	CDS	Shew_3845	NC_009092.1	4576612	4577988	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta	complement(4576612..4577988)	Shewanella loihica PV-4	4924249
YP_001095968.1	CDS	Shew_3846	NC_009092.1	4578024	4578884	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma	complement(4578024..4578884)	Shewanella loihica PV-4	4924010
YP_001095969.1	CDS	Shew_3847	NC_009092.1	4578934	4580475	R	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha	complement(4578934..4580475)	Shewanella loihica PV-4	4924011
YP_001095970.1	CDS	Shew_3848	NC_009092.1	4580490	4581023	R	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta	complement(4580490..4581023)	Shewanella loihica PV-4	4924012
YP_001095971.1	CDS	Shew_3849	NC_009092.1	4581038	4581508	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B	complement(4581038..4581508)	Shewanella loihica PV-4	4924013
YP_001095972.1	CDS	Shew_3850	NC_009092.1	4581546	4581797	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C	complement(4581546..4581797)	Shewanella loihica PV-4	4924014
YP_001095973.1	CDS	Shew_3851	NC_009092.1	4581868	4582662	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A	complement(4581868..4582662)	Shewanella loihica PV-4	4924015
YP_001095974.1	CDS	Shew_3852	NC_009092.1	4582675	4583058	R	PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I; ATP synthase I chain	complement(4582675..4583058)	Shewanella loihica PV-4	4924016
YP_001095975.1	CDS	Shew_3853	NC_009092.1	4583284	4584162	R	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: shm:Shewmr7_4025 ParB-like partition proteins; parB-like partition protein	complement(4583284..4584162)	Shewanella loihica PV-4	4924017
YP_001095976.1	CDS	Shew_3854	NC_009092.1	4584173	4584961	R	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; cobyrinic acid a,c-diamide synthase	complement(4584173..4584961)	Shewanella loihica PV-4	4924018
YP_001095977.1	CDS	gidB	NC_009092.1	4585058	4585762	R	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB	complement(4585058..4585762)	Shewanella loihica PV-4	4924019
YP_001095978.1	CDS	Shew_3856	NC_009092.1	4585784	4587673	R	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA	complement(4585784..4587673)	Shewanella loihica PV-4	4924020
YP_001095979.1	CDS	Shew_3857	NC_009092.1	4588165	4588605	R	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin	complement(4588165..4588605)	Shewanella loihica PV-4	4924021
YP_001095980.1	CDS	Shew_3858	NC_009092.1	4588736	4589518	R	KEGG: mes:Meso_3002 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase	complement(4588736..4589518)	Shewanella loihica PV-4	4924022
YP_001095981.1	CDS	Shew_3859	NC_009092.1	4589730	4590698	D	PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ppr:PBPRB1417 hypothetical inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase	4589730..4590698	Shewanella loihica PV-4	4924023
YP_001095982.1	CDS	Shew_3860	NC_009092.1	4590736	4591377	R	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_3118 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	complement(4590736..4591377)	Shewanella loihica PV-4	4924024
YP_001095983.1	CDS	Shew_3861	NC_009092.1	4591588	4592277	D	KEGG: sfr:Sfri_3844 hypothetical protein; hypothetical protein	4591588..4592277	Shewanella loihica PV-4	4923985
YP_001095984.1	CDS	Shew_3862	NC_009092.1	4593900	4594484	D	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: rha:RHA1_ro03159 resolvase; resolvase domain-containing protein	4593900..4594484	Shewanella loihica PV-4	4923986
YP_001095985.1	CDS	Shew_3863	NC_009092.1	4594563	4595552	D	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: atc:AGR_pTi_158 ATPase; ATPase central domain-containing protein	4594563..4595552	Shewanella loihica PV-4	4923987
YP_001095986.1	CDS	Shew_3864	NC_009092.1	4595573	4598116	D	KEGG: rha:RHA1_ro11076 hypothetical protein; hypothetical protein	4595573..4598116	Shewanella loihica PV-4	4923988
YP_001095987.1	CDS	trmE	NC_009092.1	4598434	4599795	R	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE	complement(4598434..4599795)	Shewanella loihica PV-4	4923989
YP_001095988.1	CDS	Shew_3866	NC_009092.1	4599900	4601528	R	PFAM: 60 kDa inner membrane insertion protein; KEGG: shm:Shewmr7_4032 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein	complement(4599900..4601528)	Shewanella loihica PV-4	4923990
YP_001095989.1	CDS	Shew_3867	NC_009092.1	4601532	4601786	R	PFAM: protein of unknown function DUF37; KEGG: sdn:Sden_3776 protein of unknown function DUF37; hypothetical protein	complement(4601532..4601786)	Shewanella loihica PV-4	4923991
YP_001095990.1	CDS	rnpA	NC_009092.1	4601753	4602115	R	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P	complement(4601753..4602115)	Shewanella loihica PV-4	4923992
YP_001095991.1	CDS	rpmH	NC_009092.1	4602125	4602262	R	in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34	complement(4602125..4602262)	Shewanella loihica PV-4	4923993
Shew_R0002	tRNA	Shew_R0002	NC_009092.1	152699	152775	D	tRNA-Ile	152699..152775	Shewanella loihica PV-4	4923995
Shew_R0003	tRNA	Shew_R0003	NC_009092.1	152828	152903	D	tRNA-Ala	152828..152903	Shewanella loihica PV-4	4923996
Shew_R0006	tRNA	Shew_R0006	NC_009092.1	160440	160515	D	tRNA-Thr	160440..160515	Shewanella loihica PV-4	4920494
Shew_R0007	tRNA	Shew_R0007	NC_009092.1	160523	160607	D	tRNA-Tyr	160523..160607	Shewanella loihica PV-4	4923979
Shew_R0008	tRNA	Shew_R0008	NC_009092.1	160644	160717	D	tRNA-Gly	160644..160717	Shewanella loihica PV-4	4923980
Shew_R0012	tRNA	Shew_R0012	NC_009092.1	208343	208419	D	tRNA-Asp	208343..208419	Shewanella loihica PV-4	4923935
Shew_R0014	tRNA	Shew_R0014	NC_009092.1	331983	332059	D	tRNA-Arg	331983..332059	Shewanella loihica PV-4	4924045
Shew_R0015	tRNA	Shew_R0015	NC_009092.1	332103	332178	D	tRNA-His	332103..332178	Shewanella loihica PV-4	4923938
Shew_R0016	tRNA	Shew_R0016	NC_009092.1	332263	332339	D	tRNA-Pro	332263..332339	Shewanella loihica PV-4	4923939
Shew_R0017	tRNA	Shew_R0017	NC_009092.1	332392	332468	D	tRNA-Pro	332392..332468	Shewanella loihica PV-4	4923940
Shew_R0018	tRNA	Shew_R0018	NC_009092.1	413069	413159	D	tRNA-Ser	413069..413159	Shewanella loihica PV-4	4921956
Shew_R0019	tRNA	Shew_R0019	NC_009092.1	633941	634016	D	tRNA-Gly	633941..634016	Shewanella loihica PV-4	4922888
Shew_R0020	tRNA	Shew_R0020	NC_009092.1	634062	634137	D	tRNA-Gly	634062..634137	Shewanella loihica PV-4	4923256
Shew_R0021	tRNA	Shew_R0021	NC_009092.1	634145	634220	D	tRNA-Gly	634145..634220	Shewanella loihica PV-4	4923257
Shew_R0022	tRNA	Shew_R0022	NC_009092.1	634229	634304	D	tRNA-Gly	634229..634304	Shewanella loihica PV-4	4923258
Shew_R0023	tRNA	Shew_R0023	NC_009092.1	1153125	1153201	R	tRNA-Met	complement(1153125..1153201)	Shewanella loihica PV-4	4923144
Shew_R0024	tRNA	Shew_R0024	NC_009092.1	1296009	1296084	R	tRNA-Thr	complement(1296009..1296084)	Shewanella loihica PV-4	4921226
Shew_R0025	tRNA	Shew_R0025	NC_009092.1	1296092	1296167	R	tRNA-Phe	complement(1296092..1296167)	Shewanella loihica PV-4	4923243
Shew_R0026	tRNA	Shew_R0026	NC_009092.1	1416121	1416212	D	tRNA-Ser	1416121..1416212	Shewanella loihica PV-4	4921422
Shew_R0027	tRNA	Shew_R0027	NC_009092.1	1416234	1416310	D	tRNA-Arg	1416234..1416310	Shewanella loihica PV-4	4923246
Shew_R0028	tRNA	Shew_R0028	NC_009092.1	1416348	1416424	D	tRNA-Arg	1416348..1416424	Shewanella loihica PV-4	4923247
Shew_R0029	tRNA	Shew_R0029	NC_009092.1	1416450	1416526	D	tRNA-Arg	1416450..1416526	Shewanella loihica PV-4	4923248
Shew_R0030	tRNA	Shew_R0030	NC_009092.1	1416580	1416656	D	tRNA-Arg	1416580..1416656	Shewanella loihica PV-4	4923249
Shew_R0031	tRNA	Shew_R0031	NC_009092.1	1416665	1416756	D	tRNA-Ser	1416665..1416756	Shewanella loihica PV-4	4923250
Shew_R0033	tRNA	Shew_R0033	NC_009092.1	1547952	1548027	R	tRNA-Arg	complement(1547952..1548027)	Shewanella loihica PV-4	4923396
Shew_R0034	tRNA	Shew_R0034	NC_009092.1	1665747	1665822	R	tRNA-Val	complement(1665747..1665822)	Shewanella loihica PV-4	4924007
Shew_R0035	tRNA	Shew_R0035	NC_009092.1	1665861	1665936	R	tRNA-Val	complement(1665861..1665936)	Shewanella loihica PV-4	4922711
Shew_R0036	tRNA	Shew_R0036	NC_009092.1	1665974	1666049	R	tRNA-Val	complement(1665974..1666049)	Shewanella loihica PV-4	4922712
Shew_R0037	tRNA	Shew_R0037	NC_009092.1	1666088	1666163	R	tRNA-Val	complement(1666088..1666163)	Shewanella loihica PV-4	4922713
Shew_R0038	tRNA	Shew_R0038	NC_009092.1	1666223	1666298	R	tRNA-Val	complement(1666223..1666298)	Shewanella loihica PV-4	4922581
Shew_R0039	tRNA	Shew_R0039	NC_009092.1	1666333	1666408	R	tRNA-Val	complement(1666333..1666408)	Shewanella loihica PV-4	4922582
Shew_R0040	tRNA	Shew_R0040	NC_009092.1	1668903	1668978	D	tRNA-Ala	1668903..1668978	Shewanella loihica PV-4	4924408
Shew_R0041	tRNA	Shew_R0041	NC_009092.1	1669059	1669134	D	tRNA-Glu	1669059..1669134	Shewanella loihica PV-4	4922584
Shew_R0042	tRNA	Shew_R0042	NC_009092.1	1669242	1669317	D	tRNA-Glu	1669242..1669317	Shewanella loihica PV-4	4922585
Shew_R0043	tRNA	Shew_R0043	NC_009092.1	1669425	1669500	D	tRNA-Glu	1669425..1669500	Shewanella loihica PV-4	4922586
Shew_R0044	tRNA	Shew_R0044	NC_009092.1	1669608	1669683	D	tRNA-Glu	1669608..1669683	Shewanella loihica PV-4	4922587
Shew_R0045	tRNA	Shew_R0045	NC_009092.1	1669791	1669866	D	tRNA-Glu	1669791..1669866	Shewanella loihica PV-4	4922588
Shew_R0046	tRNA	Shew_R0046	NC_009092.1	1669974	1670049	D	tRNA-Glu	1669974..1670049	Shewanella loihica PV-4	4922017
Shew_R0047	tRNA	Shew_R0047	NC_009092.1	1670171	1670246	D	tRNA-Glu	1670171..1670246	Shewanella loihica PV-4	4922018
Shew_R0048	tRNA	Shew_R0048	NC_009092.1	1670321	1670396	D	tRNA-Ala	1670321..1670396	Shewanella loihica PV-4	4922019
Shew_R0049	tRNA	Shew_R0049	NC_009092.1	1695147	1695223	R	tRNA-Pro	complement(1695147..1695223)	Shewanella loihica PV-4	4922903
Shew_R0050	tRNA	Shew_R0050	NC_009092.1	1752885	1752960	D	tRNA-Lys	1752885..1752960	Shewanella loihica PV-4	4922590
Shew_R0051	tRNA	Shew_R0051	NC_009092.1	1752999	1753074	D	tRNA-Lys	1752999..1753074	Shewanella loihica PV-4	4922022
Shew_R0052	tRNA	Shew_R0052	NC_009092.1	1753113	1753188	D	tRNA-Lys	1753113..1753188	Shewanella loihica PV-4	4922023
Shew_R0053	tRNA	Shew_R0053	NC_009092.1	1753363	1753438	D	tRNA-Lys	1753363..1753438	Shewanella loihica PV-4	4922024
Shew_R0054	tRNA	Shew_R0054	NC_009092.1	1753613	1753688	D	tRNA-Lys	1753613..1753688	Shewanella loihica PV-4	4921915
Shew_R0055	tRNA	Shew_R0055	NC_009092.1	1753864	1753939	D	tRNA-Lys	1753864..1753939	Shewanella loihica PV-4	4921916
Shew_R0056	tRNA	Shew_R0056	NC_009092.1	1753979	1754054	D	tRNA-Lys	1753979..1754054	Shewanella loihica PV-4	4921917
Shew_R0057	tRNA	Shew_R0057	NC_009092.1	2082317	2082393	R	tRNA-Met	complement(2082317..2082393)	Shewanella loihica PV-4	4924382
Shew_R0058	tRNA	Shew_R0058	NC_009092.1	2082440	2082516	R	tRNA-Met	complement(2082440..2082516)	Shewanella loihica PV-4	4921920
Shew_R0059	tRNA	Shew_R0059	NC_009092.1	2082564	2082640	R	tRNA-Met	complement(2082564..2082640)	Shewanella loihica PV-4	4921921
Shew_R0060	tRNA	Shew_R0060	NC_009092.1	2082688	2082764	R	tRNA-Met	complement(2082688..2082764)	Shewanella loihica PV-4	4921703
Shew_R0061	tRNA	Shew_R0061	NC_009092.1	2102518	2102593	D	tRNA-Gly	2102518..2102593	Shewanella loihica PV-4	4924355
Shew_R0062	tRNA	Shew_R0062	NC_009092.1	2102606	2102679	D	tRNA-Cys	2102606..2102679	Shewanella loihica PV-4	4921705
Shew_R0063	tRNA	Shew_R0063	NC_009092.1	2102719	2102805	D	tRNA-Leu	2102719..2102805	Shewanella loihica PV-4	4921706
Shew_R0064	tRNA	Shew_R0064	NC_009092.1	2229890	2229977	D	tRNA-Ser	2229890..2229977	Shewanella loihica PV-4	4921258
Shew_R0065	tRNA	Shew_R0065	NC_009092.1	2311927	2312013	R	tRNA-Leu	complement(2311927..2312013)	Shewanella loihica PV-4	4920964
Shew_R0066	tRNA	Shew_R0066	NC_009092.1	2312052	2312125	R	tRNA-Cys	complement(2312052..2312125)	Shewanella loihica PV-4	4921709
Shew_R0067	tRNA	Shew_R0067	NC_009092.1	2312161	2312236	R	tRNA-Gly	complement(2312161..2312236)	Shewanella loihica PV-4	4921710
Shew_R0068	tRNA	Shew_R0068	NC_009092.1	2327622	2327712	R	tRNA-Ser	complement(2327622..2327712)	Shewanella loihica PV-4	4924263
Shew_R0069	tRNA	Shew_R0069	NC_009092.1	2350595	2350671	D	tRNA-Val	2350595..2350671	Shewanella loihica PV-4	4923767
Shew_R0070	tRNA	Shew_R0070	NC_009092.1	2350692	2350768	D	tRNA-Val	2350692..2350768	Shewanella loihica PV-4	4921687
Shew_R0071	tRNA	Shew_R0071	NC_009092.1	2378777	2378861	D	tRNA-Tyr	2378777..2378861	Shewanella loihica PV-4	4923744
Shew_R0072	tRNA	Shew_R0072	NC_009092.1	2378893	2378977	D	tRNA-Tyr	2378893..2378977	Shewanella loihica PV-4	4921689
Shew_R0073	tRNA	Shew_R0073	NC_009092.1	2379018	2379102	D	tRNA-Tyr	2379018..2379102	Shewanella loihica PV-4	4921690
Shew_R0074	tRNA	Shew_R0074	NC_009092.1	2385603	2385678	D	tRNA-Asn	2385603..2385678	Shewanella loihica PV-4	4923429
Shew_R0075	tRNA	Shew_R0075	NC_009092.1	2385721	2385796	D	tRNA-Asn	2385721..2385796	Shewanella loihica PV-4	4921187
Shew_R0076	tRNA	Shew_R0076	NC_009092.1	2385823	2385898	D	tRNA-Asn	2385823..2385898	Shewanella loihica PV-4	4921188
Shew_R0077	tRNA	Shew_R0077	NC_009092.1	2385923	2385998	D	tRNA-Asn	2385923..2385998	Shewanella loihica PV-4	4921189
Shew_R0078	tRNA	Shew_R0078	NC_009092.1	2445114	2445202	R	tRNA-OTHER	complement(2445114..2445202)	Shewanella loihica PV-4	4923594
Shew_R0079	tRNA	Shew_R0079	NC_009092.1	2445296	2445372	R	tRNA-Asp	complement(2445296..2445372)	Shewanella loihica PV-4	4921191
Shew_R0080	tRNA	Shew_R0080	NC_009092.1	2445422	2445498	R	tRNA-Asp	complement(2445422..2445498)	Shewanella loihica PV-4	4921192
Shew_R0083	tRNA	Shew_R0083	NC_009092.1	2754864	2754939	R	tRNA-Ala	complement(2754864..2754939)	Shewanella loihica PV-4	4920908
Shew_R0084	tRNA	Shew_R0084	NC_009092.1	2755054	2755130	R	tRNA-Ile	complement(2755054..2755130)	Shewanella loihica PV-4	4920909
Shew_R0087	tRNA	Shew_R0087	NC_009092.1	2953121	2953196	R	tRNA-His	complement(2953121..2953196)	Shewanella loihica PV-4	4921277
Shew_R0088	tRNA	Shew_R0088	NC_009092.1	2953205	2953281	R	tRNA-Arg	complement(2953205..2953281)	Shewanella loihica PV-4	4920913
Shew_R0089	tRNA	Shew_R0089	NC_009092.1	2953345	2953421	R	tRNA-Pro	complement(2953345..2953421)	Shewanella loihica PV-4	4920914
Shew_R0091	tRNA	Shew_R0091	NC_009092.1	3354950	3355026	R	tRNA-Met	complement(3354950..3355026)	Shewanella loihica PV-4	4922337
Shew_R0092	tRNA	Shew_R0092	NC_009092.1	3355130	3355215	R	tRNA-Leu	complement(3355130..3355215)	Shewanella loihica PV-4	4920681
Shew_R0093	tRNA	Shew_R0093	NC_009092.1	3456504	3456588	R	tRNA-Leu	complement(3456504..3456588)	Shewanella loihica PV-4	4921179
Shew_R0094	tRNA	Shew_R0094	NC_009092.1	3456643	3456717	R	tRNA-Gln	complement(3456643..3456717)	Shewanella loihica PV-4	4920683
Shew_R0095	tRNA	Shew_R0095	NC_009092.1	3456763	3456847	R	tRNA-Leu	complement(3456763..3456847)	Shewanella loihica PV-4	4920684
Shew_R0096	tRNA	Shew_R0096	NC_009092.1	3456980	3457056	R	tRNA-Met	complement(3456980..3457056)	Shewanella loihica PV-4	4920685
Shew_R0097	tRNA	Shew_R0097	NC_009092.1	3457077	3457151	R	tRNA-Gln	complement(3457077..3457151)	Shewanella loihica PV-4	4920686
Shew_R0098	tRNA	Shew_R0098	NC_009092.1	3457177	3457251	R	tRNA-Gln	complement(3457177..3457251)	Shewanella loihica PV-4	4924168
Shew_R0099	tRNA	Shew_R0099	NC_009092.1	3457300	3457384	R	tRNA-Leu	complement(3457300..3457384)	Shewanella loihica PV-4	4924169
Shew_R0100	tRNA	Shew_R0100	NC_009092.1	3457454	3457530	R	tRNA-Met	complement(3457454..3457530)	Shewanella loihica PV-4	4924170
Shew_R0101	tRNA	Shew_R0101	NC_009092.1	3483012	3483088	R	tRNA-Trp	complement(3483012..3483088)	Shewanella loihica PV-4	4924082
Shew_R0105	tRNA	Shew_R0105	NC_009092.1	3497824	3497899	D	tRNA-Phe	3497824..3497899	Shewanella loihica PV-4	4924089
Shew_R0107	tRNA	Shew_R0107	NC_009092.1	3884270	3884356	R	tRNA-Leu	complement(3884270..3884356)	Shewanella loihica PV-4	4921324
Shew_R0108	tRNA	Shew_R0108	NC_009092.1	3884408	3884492	R	tRNA-Leu	complement(3884408..3884492)	Shewanella loihica PV-4	4923661
Shew_R0113	tRNA	Shew_R0113	NC_009092.1	4118943	4119018	R	tRNA-Thr	complement(4118943..4119018)	Shewanella loihica PV-4	4923666
Shew_R0116	tRNA	Shew_R0116	NC_009092.1	4122468	4122543	R	tRNA-Ala	complement(4122468..4122543)	Shewanella loihica PV-4	4923718
Shew_R0117	tRNA	Shew_R0117	NC_009092.1	4122658	4122734	R	tRNA-Ile	complement(4122658..4122734)	Shewanella loihica PV-4	4923719
Shew_R0119	tRNA	Shew_R0119	NC_009092.1	4434579	4434655	R	tRNA-Asp	complement(4434579..4434655)	Shewanella loihica PV-4	4921082
Shew_R0001	rRNA	Shew_R0001	NC_009092.1	151087	152641	D	16S ribosomal RNA	151087..152641	Shewanella loihica PV-4	4923932
Shew_R0004	rRNA	Shew_R0004	NC_009092.1	153149	156041	D	23S ribosomal RNA	153149..156041	Shewanella loihica PV-4	4923976
Shew_R0005	rRNA	Shew_R0005	NC_009092.1	156162	156282	D	5S ribosomal RNA	156162..156282	Shewanella loihica PV-4	4923977
Shew_R0009	rRNA	Shew_R0009	NC_009092.1	203400	204956	D	16S ribosomal RNA	203400..204956	Shewanella loihica PV-4	4922376
Shew_R0010	rRNA	Shew_R0010	NC_009092.1	205195	208087	D	23S ribosomal RNA	205195..208087	Shewanella loihica PV-4	4923982
Shew_R0011	rRNA	Shew_R0011	NC_009092.1	208189	208309	D	5S ribosomal RNA	208189..208309	Shewanella loihica PV-4	4923983
Shew_R0081	rRNA	Shew_R0081	NC_009092.1	2751361	2751492	R	5S ribosomal RNA	complement(2751361..2751492)	Shewanella loihica PV-4	4921729
Shew_R0082	rRNA	Shew_R0082	NC_009092.1	2751726	2754618	R	23S ribosomal RNA	complement(2751726..2754618)	Shewanella loihica PV-4	4921194
Shew_R0085	rRNA	Shew_R0085	NC_009092.1	2755324	2756880	R	16S ribosomal RNA	complement(2755324..2756880)	Shewanella loihica PV-4	4920910
Shew_R0102	rRNA	Shew_R0102	NC_009092.1	3484324	3484444	R	5S ribosomal RNA	complement(3484324..3484444)	Shewanella loihica PV-4	4924172
Shew_R0103	rRNA	Shew_R0103	NC_009092.1	3484613	3487505	R	23S ribosomal RNA	complement(3484613..3487505)	Shewanella loihica PV-4	4924173
Shew_R0104	rRNA	Shew_R0104	NC_009092.1	3487746	3489302	R	16S ribosomal RNA	complement(3487746..3489302)	Shewanella loihica PV-4	4924174
Shew_R0109	rRNA	Shew_R0109	NC_009092.1	4112264	4112384	R	5S ribosomal RNA	complement(4112264..4112384)	Shewanella loihica PV-4	4923459
Shew_R0110	rRNA	Shew_R0110	NC_009092.1	4112494	4115386	R	23S ribosomal RNA	complement(4112494..4115386)	Shewanella loihica PV-4	4923663
Shew_R0111	rRNA	Shew_R0111	NC_009092.1	4115627	4117183	R	16S ribosomal RNA	complement(4115627..4117183)	Shewanella loihica PV-4	4923664
Shew_R0112	rRNA	Shew_R0112	NC_009092.1	4118817	4118937	R	5S ribosomal RNA	complement(4118817..4118937)	Shewanella loihica PV-4	4923665
Shew_R0114	rRNA	Shew_R0114	NC_009092.1	4119098	4119229	R	5S ribosomal RNA	complement(4119098..4119229)	Shewanella loihica PV-4	4923716
Shew_R0115	rRNA	Shew_R0115	NC_009092.1	4119331	4122223	R	23S ribosomal RNA	complement(4119331..4122223)	Shewanella loihica PV-4	4923717
Shew_R0118	rRNA	Shew_R0118	NC_009092.1	4122843	4124399	R	16S ribosomal RNA	complement(4122843..4124399)	Shewanella loihica PV-4	4923720
Shew_R0120	rRNA	Shew_R0120	NC_009092.1	4434691	4434811	R	5S ribosomal RNA	complement(4434691..4434811)	Shewanella loihica PV-4	4923722
Shew_R0121	rRNA	Shew_R0121	NC_009092.1	4434911	4437803	R	23S ribosomal RNA	complement(4434911..4437803)	Shewanella loihica PV-4	4923723
Shew_R0122	rRNA	Shew_R0122	NC_009092.1	4438044	4439600	R	16S ribosomal RNA	complement(4438044..4439600)	Shewanella loihica PV-4	4923724
Shew_R0123	rRNA	Shew_R0123	NC_009092.1	4535054	4535174	R	5S ribosomal RNA	complement(4535054..4535174)	Shewanella loihica PV-4	4924166
Shew_R0124	rRNA	Shew_R0124	NC_009092.1	4535274	4538166	R	23S ribosomal RNA	complement(4535274..4538166)	Shewanella loihica PV-4	4923847
Shew_R0125	rRNA	Shew_R0125	NC_009092.1	4538407	4539962	R	16S ribosomal RNA	complement(4538407..4539962)	Shewanella loihica PV-4	4923848