-- dump date 20140620_064226 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 398579000001 SEQ_END SEQ_END NC_009901.1 5174581 5174581 DR NC_009901.1; contig end 5174581..5174581 Shewanella pealeana ATCC 700345 YP_001499865.1 CDS dnaA NC_009901.1 223 1608 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 223..1608 Shewanella pealeana ATCC 700345 5664840 YP_001499866.1 CDS Spea_0002 NC_009901.1 1628 2728 D KEGG: slo:Shew_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1628..2728 Shewanella pealeana ATCC 700345 5660403 YP_001499867.1 CDS recF NC_009901.1 2849 3931 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2849..3931 Shewanella pealeana ATCC 700345 5660404 YP_001499868.1 CDS Spea_0004 NC_009901.1 3924 6365 D KEGG: shw:Sputw3181_0004 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3924..6365 Shewanella pealeana ATCC 700345 5660405 YP_001499869.1 CDS Spea_0005 NC_009901.1 6442 7506 D PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: shn:Shewana3_0015 putative signal transduction protein; metal dependent phosphohydrolase 6442..7506 Shewanella pealeana ATCC 700345 5660406 YP_001499870.1 CDS glyS NC_009901.1 7582 9651 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(7582..9651) Shewanella pealeana ATCC 700345 5660407 YP_001499871.1 CDS glyQ NC_009901.1 9663 10526 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(9663..10526) Shewanella pealeana ATCC 700345 5660408 YP_001499872.1 CDS Spea_0008 NC_009901.1 10686 11246 D KEGG: slo:Shew_0011 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 10686..11246 Shewanella pealeana ATCC 700345 5660409 YP_001499873.1 CDS Spea_0009 NC_009901.1 11265 11930 R KEGG: slo:Shew_0012 hypothetical protein; hypothetical protein complement(11265..11930) Shewanella pealeana ATCC 700345 5660410 YP_001499874.1 CDS Spea_0010 NC_009901.1 12160 15360 R PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: slo:Shew_0013 amidohydrolase; amidohydrolase complement(12160..15360) Shewanella pealeana ATCC 700345 5660411 YP_001499875.1 CDS Spea_0011 NC_009901.1 15705 16142 R KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein complement(15705..16142) Shewanella pealeana ATCC 700345 5660412 YP_001499876.1 CDS Spea_0012 NC_009901.1 16177 16422 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(16177..16422) Shewanella pealeana ATCC 700345 5660413 YP_001499877.1 CDS Spea_0013 NC_009901.1 16567 17037 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vfi:VF1792 regulatory protein; ybaK/ebsC protein complement(16567..17037) Shewanella pealeana ATCC 700345 5660414 YP_001499878.1 CDS Spea_0014 NC_009901.1 17096 17557 R PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 complement(17096..17557) Shewanella pealeana ATCC 700345 5660415 YP_001499879.1 CDS Spea_0015 NC_009901.1 17680 18432 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit complement(17680..18432) Shewanella pealeana ATCC 700345 5660416 YP_001499880.1 CDS Spea_0016 NC_009901.1 18516 18914 R KEGG: mmw:Mmwyl1_3491 transposase; transposase complement(18516..18914) Shewanella pealeana ATCC 700345 5660417 YP_001499881.1 CDS fadA NC_009901.1 19009 20172 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(19009..20172) Shewanella pealeana ATCC 700345 5660418 YP_001499882.1 CDS fadB NC_009901.1 20191 22344 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(20191..22344) Shewanella pealeana ATCC 700345 5660419 YP_001499883.1 CDS Spea_0019 NC_009901.1 22709 24031 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 22709..24031 Shewanella pealeana ATCC 700345 5660420 YP_001499884.1 CDS Spea_0020 NC_009901.1 24050 24664 D PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: slo:Shew_0021 protein of unknown function UPF0029; hypothetical protein 24050..24664 Shewanella pealeana ATCC 700345 5660421 YP_001499885.1 CDS Spea_0021 NC_009901.1 24810 26267 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: slo:Shew_0022 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 24810..26267 Shewanella pealeana ATCC 700345 5660422 YP_001499886.1 CDS Spea_0022 NC_009901.1 26409 26936 D KEGG: slo:Shew_0023 protoporphyrinogen oxidase; protoporphyrinogen oxidase 26409..26936 Shewanella pealeana ATCC 700345 5660423 YP_001499887.1 CDS Spea_0023 NC_009901.1 27037 27435 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 27037..27435 Shewanella pealeana ATCC 700345 5660424 YP_001499888.1 CDS Spea_0024 NC_009901.1 27519 28271 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 27519..28271 Shewanella pealeana ATCC 700345 5660425 YP_001499889.1 CDS Spea_0025 NC_009901.1 28334 28639 R PFAM: regulatory protein ArsR; KEGG: shw:Sputw3181_0018 regulatory protein, ArsR; ArsR family transcriptional regulator complement(28334..28639) Shewanella pealeana ATCC 700345 5660426 YP_001499890.1 CDS Spea_0026 NC_009901.1 28851 29390 D KEGG: slo:Shew_0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 28851..29390 Shewanella pealeana ATCC 700345 5660427 YP_001499891.1 CDS Spea_0027 NC_009901.1 29446 30888 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: slo:Shew_3740 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(29446..30888) Shewanella pealeana ATCC 700345 5660428 YP_001499892.1 CDS trkA NC_009901.1 30910 32319 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(30910..32319) Shewanella pealeana ATCC 700345 5660429 YP_001499893.1 CDS Spea_0029 NC_009901.1 32327 33607 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sbl:Sbal_0030 sun protein; sun protein complement(32327..33607) Shewanella pealeana ATCC 700345 5660430 YP_001499894.1 CDS Spea_0030 NC_009901.1 33614 34579 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shm:Shewmr7_0026 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(33614..34579) Shewanella pealeana ATCC 700345 5660431 YP_001499895.1 CDS def NC_009901.1 34584 35183 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(34584..35183) Shewanella pealeana ATCC 700345 5660432 YP_001499896.1 CDS Spea_0032 NC_009901.1 35245 36333 D PFAM: Peptidoglycan-binding LysM; KEGG: slo:Shew_3735 peptidoglycan-binding LysM; peptidoglycan-binding LysM 35245..36333 Shewanella pealeana ATCC 700345 5660433 YP_001499897.1 CDS Spea_0033 NC_009901.1 36489 37508 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: shw:Sputw3181_0026 DNA protecting protein DprA; DNA protecting protein DprA 36489..37508 Shewanella pealeana ATCC 700345 5660434 YP_001499898.1 CDS Spea_0034 NC_009901.1 37511 37984 D PFAM: protein of unknown function DUF494; KEGG: shw:Sputw3181_0027 protein of unknown function DUF494; hypothetical protein 37511..37984 Shewanella pealeana ATCC 700345 5660435 YP_001499899.1 CDS Spea_0035 NC_009901.1 38252 39811 R PFAM: Peptidase M9A collagenase domain protein; KEGG: slo:Shew_3732 microbial collagenase; collagenase complement(38252..39811) Shewanella pealeana ATCC 700345 5660436 YP_001499900.1 CDS Spea_0036 NC_009901.1 40012 40575 D PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: sbm:Shew185_0031 DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 40012..40575 Shewanella pealeana ATCC 700345 5660437 YP_001499901.1 CDS Spea_0037 NC_009901.1 40662 41225 D PFAM: SUA5/yciO/yrdC domain; KEGG: sbm:Shew185_0032 SUA5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 40662..41225 Shewanella pealeana ATCC 700345 5660438 YP_001499902.1 CDS Spea_0038 NC_009901.1 41250 42164 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 41250..42164 Shewanella pealeana ATCC 700345 5660439 YP_001499903.1 CDS Spea_0039 NC_009901.1 42219 42653 R PFAM: globin; KEGG: shm:Shewmr7_0034 globin; globin complement(42219..42653) Shewanella pealeana ATCC 700345 5660440 YP_001499904.1 CDS Spea_0040 NC_009901.1 42821 43636 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: slo:Shew_3727 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 42821..43636 Shewanella pealeana ATCC 700345 5660441 YP_001499905.1 CDS Spea_0041 NC_009901.1 43660 43938 D PFAM: protein of unknown function DUF1488; KEGG: shn:Shewana3_0044 protein of unknown function DUF1488; hypothetical protein 43660..43938 Shewanella pealeana ATCC 700345 5660442 YP_001499906.1 CDS Spea_0042 NC_009901.1 43968 44525 R KEGG: son:SO_0042 carbonic anhydrase, family 3; carbonic anhydrase complement(43968..44525) Shewanella pealeana ATCC 700345 5660443 YP_001499907.1 CDS Spea_0043 NC_009901.1 57162 59639 R KEGG: sbl:Sbal_2968 protein of unknown function DUF115; hypothetical protein complement(57162..59639) Shewanella pealeana ATCC 700345 5664650 YP_001499908.1 CDS Spea_0044 NC_009901.1 59713 59967 R KEGG: shn:Shewana3_1310 hypothetical protein; hypothetical protein complement(59713..59967) Shewanella pealeana ATCC 700345 5660445 YP_001499909.1 CDS Spea_0045 NC_009901.1 59964 61265 R PFAM: protein of unknown function DUF115; KEGG: sbl:Sbal_2956 protein of unknown function DUF115; hypothetical protein complement(59964..61265) Shewanella pealeana ATCC 700345 5660446 YP_001499910.1 CDS Spea_0046 NC_009901.1 61701 62882 D PFAM: polysaccharide biosynthesis protein CapD; KEGG: vfi:VF0140 UDP-N-acetylglucosamine 4,6-dehydratase; polysaccharide biosynthesis protein CapD 61701..62882 Shewanella pealeana ATCC 700345 5660447 YP_001499911.1 CDS Spea_0047 NC_009901.1 62895 64055 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: vha:VIBHAR_00668 hypothetical protein; DegT/DnrJ/EryC1/StrS aminotransferase 62895..64055 Shewanella pealeana ATCC 700345 5660448 YP_001499912.1 CDS Spea_0048 NC_009901.1 64064 65242 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: vpa:VP0199 putative NeuC; UDP-N-acetylglucosamine 2-epimerase 64064..65242 Shewanella pealeana ATCC 700345 5660449 YP_001499913.1 CDS Spea_0049 NC_009901.1 65250 66323 D PFAM: N-acetylneuraminic acid synthase domain; KEGG: vfi:VF0143 N-acetylneuraminate synthase; N-acylneuraminate-9-phosphate synthase 65250..66323 Shewanella pealeana ATCC 700345 5660450 YP_001499914.1 CDS Spea_0050 NC_009901.1 66316 66960 D KEGG: vfi:VF0144 sialic acid biosynthesis protein NeuD; sialic acid synthase 66316..66960 Shewanella pealeana ATCC 700345 5660451 YP_001499915.1 CDS Spea_0051 NC_009901.1 66980 68035 D PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: vfi:VF0145 mannose-1-phosphate guanyltransferase; nucleotidyl transferase 66980..68035 Shewanella pealeana ATCC 700345 5660452 YP_001499916.1 CDS Spea_0052 NC_009901.1 68035 68727 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; acylneuraminate cytidylyltransferase; KEGG: vha:VIBHAR_00677 hypothetical protein; acylneuraminate cytidylyltransferase 68035..68727 Shewanella pealeana ATCC 700345 5660453 YP_001499917.1 CDS Spea_0053 NC_009901.1 68776 69063 R KEGG: sdn:Sden_3629 hypothetical protein; hypothetical protein complement(68776..69063) Shewanella pealeana ATCC 700345 5660454 YP_001499918.1 CDS Spea_0054 NC_009901.1 69114 69545 R KEGG: shw:Sputw3181_0493 type IV pilus assembly PilZ; hypothetical protein complement(69114..69545) Shewanella pealeana ATCC 700345 5660455 YP_001499919.1 CDS Spea_0055 NC_009901.1 69530 70540 R PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB domain-containing protein complement(69530..70540) Shewanella pealeana ATCC 700345 5660456 YP_001499920.1 CDS Spea_0056 NC_009901.1 70540 71397 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(70540..71397) Shewanella pealeana ATCC 700345 5660457 YP_001499921.1 CDS fliA NC_009901.1 71412 72134 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(71412..72134) Shewanella pealeana ATCC 700345 5660458 YP_001499922.1 CDS Spea_0058 NC_009901.1 72146 72601 R PFAM: flagellar basal body-associated protein FliL; KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(72146..72601) Shewanella pealeana ATCC 700345 5660459 YP_001499923.1 CDS Spea_0059 NC_009901.1 72616 73788 R PFAM: flagellar hook-length control protein; KEGG: sdn:Sden_3635 flagellar hook-length control protein; flagellar hook-length control protein complement(72616..73788) Shewanella pealeana ATCC 700345 5660460 YP_001499924.1 CDS Spea_0060 NC_009901.1 73781 74104 R KEGG: sbl:Sbal_3953 hypothetical protein; hypothetical protein complement(73781..74104) Shewanella pealeana ATCC 700345 5660461 YP_001499925.1 CDS Spea_0061 NC_009901.1 74073 74453 R PFAM: flagellar protein FliS; KEGG: sbl:Sbal_3954 flagellar protein FliS; flagellar protein FliS complement(74073..74453) Shewanella pealeana ATCC 700345 5660462 YP_001499926.1 CDS Spea_0062 NC_009901.1 74467 75885 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: sbl:Sbal_3955 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein complement(74467..75885) Shewanella pealeana ATCC 700345 5660463 YP_001499927.1 CDS Spea_0063 NC_009901.1 76202 77020 R PFAM: flagellin domain protein; KEGG: sbl:Sbal_3957 flagellin domain protein; flagellin domain-containing protein complement(76202..77020) Shewanella pealeana ATCC 700345 5660464 YP_001499928.1 CDS Spea_0064 NC_009901.1 77319 78350 R KEGG: spc:Sputcn32_3457 hypothetical protein; hypothetical protein complement(77319..78350) Shewanella pealeana ATCC 700345 5660465 YP_001499929.1 CDS Spea_0065 NC_009901.1 78369 79286 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: spc:Sputcn32_3458 flagellar hook-associated protein 3; flagellar hook-associated protein 3 complement(78369..79286) Shewanella pealeana ATCC 700345 5660466 YP_001499930.1 CDS Spea_0066 NC_009901.1 79297 80670 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbl:Sbal_3962 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(79297..80670) Shewanella pealeana ATCC 700345 5660467 YP_001499931.1 CDS flgJ NC_009901.1 80721 81143 R FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase complement(80721..81143) Shewanella pealeana ATCC 700345 5660468 YP_001499932.1 CDS flgI NC_009901.1 81143 82273 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(81143..82273) Shewanella pealeana ATCC 700345 5660469 YP_001499933.1 CDS flgH NC_009901.1 82311 82985 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(82311..82985) Shewanella pealeana ATCC 700345 5660470 YP_001499934.1 CDS Spea_0070 NC_009901.1 83033 83818 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: shw:Sputw3181_0476 flagellar basal-body rod protein FlgG; flagellar basal-body rod protein FlgG complement(83033..83818) Shewanella pealeana ATCC 700345 5660471 YP_001499935.1 CDS Spea_0071 NC_009901.1 83843 84568 R TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: shw:Sputw3181_0475 flagellar basal-body rod protein FlgF; flagellar basal-body rod protein FlgF complement(83843..84568) Shewanella pealeana ATCC 700345 5660472 YP_001499936.1 CDS flgE NC_009901.1 84587 85795 R the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE complement(84587..85795) Shewanella pealeana ATCC 700345 5660473 YP_001499937.1 CDS Spea_0073 NC_009901.1 85819 86478 R PFAM: flagellar hook capping protein; KEGG: sbl:Sbal_3969 flagellar hook capping protein; flagellar hook capping protein complement(85819..86478) Shewanella pealeana ATCC 700345 5660474 YP_001499938.1 CDS Spea_0074 NC_009901.1 86478 86897 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: shw:Sputw3181_0472 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(86478..86897) Shewanella pealeana ATCC 700345 5660475 YP_001499939.1 CDS flgB NC_009901.1 86906 87256 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB complement(86906..87256) Shewanella pealeana ATCC 700345 5660476 YP_001499940.1 CDS Spea_0076 NC_009901.1 87320 88084 D PFAM: SAF domain protein; KEGG: shw:Sputw3181_0470 SAF domain; SAF domain-containing protein 87320..88084 Shewanella pealeana ATCC 700345 5660477 YP_001499941.1 CDS Spea_0077 NC_009901.1 88187 88471 D KEGG: shw:Sputw3181_0469 hypothetical protein; hypothetical protein 88187..88471 Shewanella pealeana ATCC 700345 5660478 YP_001499942.1 CDS Spea_0078 NC_009901.1 88464 88922 D KEGG: shw:Sputw3181_0468 hypothetical protein; hypothetical protein 88464..88922 Shewanella pealeana ATCC 700345 5660479 YP_001499943.1 CDS Spea_0079 NC_009901.1 88938 89351 R KEGG: shw:Sputw3181_0467 hypothetical protein; hypothetical protein complement(88938..89351) Shewanella pealeana ATCC 700345 5660480 YP_001499944.1 CDS Spea_0080 NC_009901.1 89366 90703 R KEGG: sbl:Sbal_3976 ATPase, FliI/YscN family; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase complement(89366..90703) Shewanella pealeana ATCC 700345 5660481 YP_001499945.1 CDS fliH NC_009901.1 90681 91436 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(90681..91436) Shewanella pealeana ATCC 700345 5660482 YP_001499946.1 CDS fliG NC_009901.1 91436 92449 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(91436..92449) Shewanella pealeana ATCC 700345 5660483 YP_001499947.1 CDS fliF NC_009901.1 92510 94210 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein complement(92510..94210) Shewanella pealeana ATCC 700345 5660484 YP_001499948.1 CDS Spea_0084 NC_009901.1 94286 94624 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sbl:Sbal_3980 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(94286..94624) Shewanella pealeana ATCC 700345 5660485 YP_001499949.1 CDS Spea_0085 NC_009901.1 94655 95962 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shw:Sputw3181_0461 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(94655..95962) Shewanella pealeana ATCC 700345 5660486 YP_001499950.1 CDS Spea_0086 NC_009901.1 95949 96860 R PFAM: OmpA/MotB domain protein; KEGG: ppr:PBPRA0019 hypothetical protein; OmpA/MotB domain-containing protein complement(95949..96860) Shewanella pealeana ATCC 700345 5660487 YP_001499951.1 CDS Spea_0087 NC_009901.1 97405 98286 D KEGG: sbl:Sbal_3982 hypothetical protein; hypothetical protein 97405..98286 Shewanella pealeana ATCC 700345 5660488 YP_001499952.1 CDS Spea_0088 NC_009901.1 98279 98635 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: shw:Sputw3181_0459 flagellar motor switch protein FliN; flagellar motor switch protein FliN 98279..98635 Shewanella pealeana ATCC 700345 5660489 YP_001499953.1 CDS fliP NC_009901.1 98638 99366 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 98638..99366 Shewanella pealeana ATCC 700345 5660490 YP_001499954.1 CDS Spea_0090 NC_009901.1 99553 99822 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: sbl:Sbal_3985 export protein FliQ, family 3; flagellar biosynthetic protein FliQ 99553..99822 Shewanella pealeana ATCC 700345 5660491 YP_001499955.1 CDS Spea_0091 NC_009901.1 99901 100680 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: spc:Sputcn32_3483 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 99901..100680 Shewanella pealeana ATCC 700345 5660492 YP_001499956.1 CDS Spea_0092 NC_009901.1 100677 101807 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: shw:Sputw3181_0455 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 100677..101807 Shewanella pealeana ATCC 700345 5660493 YP_001499957.1 CDS Spea_0093 NC_009901.1 101823 103904 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: shw:Sputw3181_0454 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 101823..103904 Shewanella pealeana ATCC 700345 5660494 YP_001499958.1 CDS Spea_0094 NC_009901.1 103963 104937 R PFAM: alpha/beta hydrolase fold; KEGG: shn:Shewana3_4119 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(103963..104937) Shewanella pealeana ATCC 700345 5660495 YP_001499959.1 CDS Spea_0095 NC_009901.1 105266 107065 R PFAM: protein of unknown function DUF885; KEGG: shn:Shewana3_4118 protein of unknown function DUF885; hypothetical protein complement(105266..107065) Shewanella pealeana ATCC 700345 5660496 YP_001499960.1 CDS Spea_0096 NC_009901.1 107416 108756 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(107416..108756) Shewanella pealeana ATCC 700345 5660497 YP_001499961.1 CDS Spea_0097 NC_009901.1 109044 109511 R KEGG: slo:Shew_3719 hypothetical protein; hypothetical protein complement(109044..109511) Shewanella pealeana ATCC 700345 5660498 YP_001499962.1 CDS Spea_0098 NC_009901.1 109605 110141 R PFAM: protein of unknown function DUF414; KEGG: slo:Shew_3718 hypothetical protein; hypothetical protein complement(109605..110141) Shewanella pealeana ATCC 700345 5660499 YP_001499963.1 CDS Spea_0099 NC_009901.1 110195 110863 R KEGG: slo:Shew_3717 hypothetical protein; hypothetical protein complement(110195..110863) Shewanella pealeana ATCC 700345 5660500 YP_001499964.1 CDS Spea_0100 NC_009901.1 111657 112277 R PFAM: cytochrome c class I; KEGG: spc:Sputcn32_3908 cytochrome c, class I; cytochrome c class I complement(111657..112277) Shewanella pealeana ATCC 700345 5660501 YP_001499965.1 CDS engB NC_009901.1 112447 113124 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 112447..113124 Shewanella pealeana ATCC 700345 5660502 YP_001499966.1 CDS Spea_0102 NC_009901.1 113799 116555 R KEGG: slo:Shew_3714 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(113799..116555) Shewanella pealeana ATCC 700345 5660503 YP_001499967.1 CDS Spea_0103 NC_009901.1 116943 117596 D PFAM: ThiJ/PfpI domain protein; KEGG: shw:Sputw3181_0046 ThiJ/PfpI domain protein; isoprenoid biosynthesis protein with amidotransferase-like domain 116943..117596 Shewanella pealeana ATCC 700345 5660504 YP_001499968.1 CDS Spea_0104 NC_009901.1 117717 118556 R PFAM: Rhomboid family protein; KEGG: shw:Sputw3181_0047 rhomboid family protein; rhomboid family protein complement(117717..118556) Shewanella pealeana ATCC 700345 5660505 YP_001499969.1 CDS Spea_0105 NC_009901.1 118577 118885 R PFAM: Rhodanese domain protein; KEGG: sfr:Sfri_3940 rhodanese domain protein; rhodanese domain-containing protein complement(118577..118885) Shewanella pealeana ATCC 700345 5660506 YP_001499970.1 CDS tdh NC_009901.1 118993 120018 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(118993..120018) Shewanella pealeana ATCC 700345 5660507 YP_001499971.1 CDS Spea_0107 NC_009901.1 120102 121298 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(120102..121298) Shewanella pealeana ATCC 700345 5660508 YP_001499972.1 CDS Spea_0108 NC_009901.1 121550 122191 R PFAM: regulatory protein TetR; KEGG: spc:Sputcn32_3900 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(121550..122191) Shewanella pealeana ATCC 700345 5660509 YP_001499973.1 CDS Spea_0109 NC_009901.1 122368 123633 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: shw:Sputw3181_0052 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 122368..123633 Shewanella pealeana ATCC 700345 5660510 YP_001499974.1 CDS Spea_0110 NC_009901.1 123700 124431 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(123700..124431) Shewanella pealeana ATCC 700345 5660511 YP_001499975.1 CDS Spea_0111 NC_009901.1 124517 125596 D PFAM: glycosyl transferase family 9; KEGG: slo:Shew_3702 glycosyl transferase, family 9; glycosyl transferase family protein 124517..125596 Shewanella pealeana ATCC 700345 5660512 YP_001499976.1 CDS Spea_0112 NC_009901.1 125661 126743 D KEGG: sbl:Sbal_0063 hypothetical protein; hypothetical protein 125661..126743 Shewanella pealeana ATCC 700345 5660513 YP_001499977.1 CDS Spea_0113 NC_009901.1 126743 127828 D PFAM: glycosyl transferase group 1; KEGG: sbm:Shew185_4335 glycosyl transferase group 1; group 1 glycosyl transferase 126743..127828 Shewanella pealeana ATCC 700345 5660514 YP_001499978.1 CDS Spea_0114 NC_009901.1 127858 128913 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: shm:Shewmr7_3986 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 127858..128913 Shewanella pealeana ATCC 700345 5660515 YP_001499979.1 CDS Spea_0115 NC_009901.1 128921 129997 R PFAM: glycosyl transferase group 1; KEGG: shm:Shewmr7_3984 glycosyl transferase, group 1; group 1 glycosyl transferase complement(128921..129997) Shewanella pealeana ATCC 700345 5660516 YP_001499980.1 CDS Spea_0116 NC_009901.1 130187 130930 D PFAM: glycosyl transferase family 25; KEGG: par:Psyc_1207 probable glycosyl transferase family 25, LPS biosynthesis; glycosyl transferase family protein 130187..130930 Shewanella pealeana ATCC 700345 5660517 YP_001499981.1 CDS Spea_0117 NC_009901.1 131013 131174 D KEGG: sbl:Sbal_0299 hypothetical protein; hypothetical protein 131013..131174 Shewanella pealeana ATCC 700345 5660518 YP_001499982.1 CDS Spea_0118 NC_009901.1 131327 132550 D PFAM: sodium/glutamate symporter; KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter 131327..132550 Shewanella pealeana ATCC 700345 5660519 YP_001499983.1 CDS Spea_0119 NC_009901.1 132694 132978 D KEGG: cps:CPS_0845 hypothetical protein; hypothetical protein 132694..132978 Shewanella pealeana ATCC 700345 5660520 YP_001499984.1 CDS Spea_0120 NC_009901.1 132978 133850 D PFAM: protein of unknown function DUF692; KEGG: sbm:Shew185_3392 protein of unknown function DUF692; hypothetical protein 132978..133850 Shewanella pealeana ATCC 700345 5660521 YP_001499985.1 CDS Spea_0121 NC_009901.1 133841 134626 D KEGG: cvi:CV_3514 hypothetical protein; hypothetical protein 133841..134626 Shewanella pealeana ATCC 700345 5660522 YP_001499986.1 CDS Spea_0122 NC_009901.1 134632 135111 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pde:Pden_4558 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 134632..135111 Shewanella pealeana ATCC 700345 5660523 YP_001499987.1 CDS Spea_0123 NC_009901.1 135114 135884 D hypothetical protein 135114..135884 Shewanella pealeana ATCC 700345 5660524 YP_001499988.1 CDS Spea_0124 NC_009901.1 135909 136391 R PFAM: protein of unknown function DUF333; KEGG: sbm:Shew185_0128 protein of unknown function DUF333; hypothetical protein complement(135909..136391) Shewanella pealeana ATCC 700345 5660525 YP_001499989.1 CDS Spea_0125 NC_009901.1 136765 138279 D PFAM: Catalase domain protein; KEGG: sbm:Shew185_0250 catalase; catalase 136765..138279 Shewanella pealeana ATCC 700345 5660526 YP_001499990.1 CDS Spea_0126 NC_009901.1 138483 139061 D KEGG: sbm:Shew185_0251 ankyrin; ankyrin 138483..139061 Shewanella pealeana ATCC 700345 5660527 YP_001499991.1 CDS Spea_0127 NC_009901.1 139162 139932 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(139162..139932) Shewanella pealeana ATCC 700345 5660528 YP_001499992.1 CDS Spea_0128 NC_009901.1 139967 141211 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: slo:Shew_0046 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein complement(139967..141211) Shewanella pealeana ATCC 700345 5660529 YP_001499993.1 CDS Spea_0129 NC_009901.1 141562 142089 D PFAM: Ferritin Dps family protein; KEGG: slo:Shew_0042 ferritin, Dps family protein; ferroxidase 141562..142089 Shewanella pealeana ATCC 700345 5660530 YP_001499994.1 CDS Spea_0130 NC_009901.1 142174 145392 R KEGG: sbm:Shew185_0133 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(142174..145392) Shewanella pealeana ATCC 700345 5660531 YP_001499995.1 CDS ribB NC_009901.1 145678 146316 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(145678..146316) Shewanella pealeana ATCC 700345 5660532 YP_001499996.1 CDS Spea_0132 NC_009901.1 146933 149083 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: she:Shewmr4_0136 oligopeptidase B; oligopeptidase B 146933..149083 Shewanella pealeana ATCC 700345 5660533 YP_001499997.1 CDS Spea_0133 NC_009901.1 149083 149442 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: sbl:Sbal_4217 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 149083..149442 Shewanella pealeana ATCC 700345 5660534 YP_001499998.1 CDS Spea_0134 NC_009901.1 149524 150183 R KEGG: sde:Sde_0576 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(149524..150183) Shewanella pealeana ATCC 700345 5660535 YP_001499999.1 CDS Spea_0135 NC_009901.1 150597 151352 R KEGG: shm:Shewmr7_0138 lipoprotein, putative; putative lipoprotein complement(150597..151352) Shewanella pealeana ATCC 700345 5660536 YP_001500000.1 CDS Spea_0136 NC_009901.1 151630 152433 D PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sbm:Shew185_0141 methyltransferase type 12; type 12 methyltransferase 151630..152433 Shewanella pealeana ATCC 700345 5660537 YP_001500001.1 CDS Spea_0137 NC_009901.1 152488 154326 R PFAM: peptidase M14 carboxypeptidase A; KEGG: sbl:Sbal_4213 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A complement(152488..154326) Shewanella pealeana ATCC 700345 5660538 YP_001500002.1 CDS Spea_0138 NC_009901.1 154511 154720 R PFAM: helix-turn-helix domain protein; KEGG: ccr:CC_2232 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(154511..154720) Shewanella pealeana ATCC 700345 5660539 YP_001500003.1 CDS Spea_0139 NC_009901.1 154717 155139 R KEGG: slo:Shew_3626 hypothetical protein; hypothetical protein complement(154717..155139) Shewanella pealeana ATCC 700345 5660540 YP_001500004.1 CDS Spea_0140 NC_009901.1 155440 156981 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(155440..156981) Shewanella pealeana ATCC 700345 5660541 YP_001500005.1 CDS hslO NC_009901.1 157228 158100 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(157228..158100) Shewanella pealeana ATCC 700345 5660542 YP_001500006.1 CDS Spea_0142 NC_009901.1 158117 158515 R PFAM: RNA-binding S4 domain protein; KEGG: slo:Shew_3621 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(158117..158515) Shewanella pealeana ATCC 700345 5660543 YP_001500007.1 CDS Spea_0143 NC_009901.1 158789 159706 D TIGRFAM: general secretion pathway protein C; KEGG: slo:Shew_3620 general secretion pathway protein C; general secretion pathway protein C 158789..159706 Shewanella pealeana ATCC 700345 5660544 YP_001500008.1 CDS Spea_0144 NC_009901.1 159791 161923 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: slo:Shew_3619 general secretion pathway protein D; general secretion pathway protein D 159791..161923 Shewanella pealeana ATCC 700345 5660545 YP_001500009.1 CDS Spea_0145 NC_009901.1 161916 163487 D KEGG: slo:Shew_3618 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 161916..163487 Shewanella pealeana ATCC 700345 5660546 YP_001500010.1 CDS Spea_0146 NC_009901.1 163491 164714 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: slo:Shew_3617 general secretion pathway protein F; general secretion pathway protein F 163491..164714 Shewanella pealeana ATCC 700345 5660547 YP_001500011.1 CDS Spea_0147 NC_009901.1 164778 165212 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: slo:Shew_3616 general secretion pathway protein G; general secretion pathway protein G 164778..165212 Shewanella pealeana ATCC 700345 5660548 YP_001500012.1 CDS Spea_0148 NC_009901.1 165175 165807 D TIGRFAM: general secretion pathway protein H; KEGG: slo:Shew_3615 general secretion pathway protein H; general secretion pathway protein H 165175..165807 Shewanella pealeana ATCC 700345 5660549 YP_001500013.1 CDS Spea_0149 NC_009901.1 165804 166181 D TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: slo:Shew_3614 general secretion pathway protein I; general secretion pathway protein I 165804..166181 Shewanella pealeana ATCC 700345 5660550 YP_001500014.1 CDS Spea_0150 NC_009901.1 166162 166887 D TIGRFAM: general secretion pathway protein J; KEGG: sbl:Sbal_4200 general secretion pathway protein J; general secretion pathway protein J 166162..166887 Shewanella pealeana ATCC 700345 5660551 YP_001500015.1 CDS Spea_0151 NC_009901.1 166887 167867 D PFAM: General secretion pathway protein K; KEGG: slo:Shew_3612 general secretion pathway protein K; general secretion pathway protein K 166887..167867 Shewanella pealeana ATCC 700345 5660552 YP_001500016.1 CDS Spea_0152 NC_009901.1 167912 169105 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: shm:Shewmr7_0159 general secretion pathway protein L; general secretion pathway protein L 167912..169105 Shewanella pealeana ATCC 700345 5660553 YP_001500017.1 CDS Spea_0153 NC_009901.1 169107 169583 D PFAM: General secretion pathway M protein; KEGG: slo:Shew_3610 general secretion pathway M protein; general secretion pathway M protein 169107..169583 Shewanella pealeana ATCC 700345 5660554 YP_001500018.1 CDS Spea_0154 NC_009901.1 169593 170351 D PFAM: type II secretion system protein N; KEGG: slo:Shew_3609 type II secretion system protein N; type II secretion system protein N 169593..170351 Shewanella pealeana ATCC 700345 5660555 YP_001500019.1 CDS Spea_0155 NC_009901.1 170442 171110 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbm:Shew185_0160 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase complement(170442..171110) Shewanella pealeana ATCC 700345 5660556 YP_001500020.1 CDS nudE NC_009901.1 171198 171752 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 171198..171752 Shewanella pealeana ATCC 700345 5660557 YP_001500021.1 CDS Spea_0157 NC_009901.1 171797 172606 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: slo:Shew_0130 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 171797..172606 Shewanella pealeana ATCC 700345 5660558 YP_001500022.1 CDS Spea_0158 NC_009901.1 172599 173060 D PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_0131 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 172599..173060 Shewanella pealeana ATCC 700345 5660559 YP_001500023.1 CDS Spea_0159 NC_009901.1 173066 174748 D PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_0122 phospholipid/glycerol acyltransferase; major facilitator transporter 173066..174748 Shewanella pealeana ATCC 700345 5660560 YP_001500024.1 CDS Spea_0160 NC_009901.1 174763 175860 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(174763..175860) Shewanella pealeana ATCC 700345 5660561 YP_001500025.1 CDS Spea_0161 NC_009901.1 175860 176900 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(175860..176900) Shewanella pealeana ATCC 700345 5660562 YP_001500026.1 CDS Spea_0162 NC_009901.1 177091 178227 R PFAM: fatty acid desaturase; KEGG: shw:Sputw3181_3679 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase complement(177091..178227) Shewanella pealeana ATCC 700345 5660563 YP_001500027.1 CDS Spea_0163 NC_009901.1 178274 178951 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 178274..178951 Shewanella pealeana ATCC 700345 5660564 YP_001500028.1 CDS Spea_0164 NC_009901.1 179017 180114 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(179017..180114) Shewanella pealeana ATCC 700345 5660565 YP_001500029.1 CDS Spea_0165 NC_009901.1 180312 181118 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 180312..181118 Shewanella pealeana ATCC 700345 5660566 YP_001500030.1 CDS Spea_0166 NC_009901.1 181132 181587 R PFAM: RNP-1 like RNA-binding protein; KEGG: slo:Shew_0140 RNP-1-like RNA-binding protein; RNP-1 like RNA-binding protein complement(181132..181587) Shewanella pealeana ATCC 700345 5660567 YP_001500031.1 CDS murB NC_009901.1 188407 189432 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 188407..189432 Shewanella pealeana ATCC 700345 5664656 YP_001500032.1 CDS Spea_0168 NC_009901.1 189434 190396 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 189434..190396 Shewanella pealeana ATCC 700345 5660569 YP_001500033.1 CDS Spea_0169 NC_009901.1 190429 191379 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(190429..191379) Shewanella pealeana ATCC 700345 5660570 YP_001500034.1 CDS Spea_0170 NC_009901.1 192087 193271 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 192087..193271 Shewanella pealeana ATCC 700345 5664659 YP_001500035.1 CDS secE NC_009901.1 193561 193932 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 193561..193932 Shewanella pealeana ATCC 700345 5660572 YP_001500036.1 CDS Spea_0172 NC_009901.1 193942 194493 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: slo:Shew_0146 NusG antitermination factor; NusG antitermination factor 193942..194493 Shewanella pealeana ATCC 700345 5660573 YP_001500037.1 CDS rplK NC_009901.1 194619 195047 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 194619..195047 Shewanella pealeana ATCC 700345 5660574 YP_001500038.1 CDS rplA NC_009901.1 195052 195753 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 195052..195753 Shewanella pealeana ATCC 700345 5660575 YP_001500039.1 CDS rplJ NC_009901.1 196021 196518 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 196021..196518 Shewanella pealeana ATCC 700345 5660576 YP_001500040.1 CDS rplL NC_009901.1 196575 196940 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 196575..196940 Shewanella pealeana ATCC 700345 5660577 YP_001500041.1 CDS rpoB NC_009901.1 197180 201211 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 197180..201211 Shewanella pealeana ATCC 700345 5660578 YP_001500042.1 CDS Spea_0178 NC_009901.1 201292 205506 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 201292..205506 Shewanella pealeana ATCC 700345 5660579 YP_001500043.1 CDS rpsL NC_009901.1 205696 206070 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 205696..206070 Shewanella pealeana ATCC 700345 5660580 YP_001500044.1 CDS Spea_0180 NC_009901.1 206151 206621 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 206151..206621 Shewanella pealeana ATCC 700345 5660581 YP_001500045.1 CDS Spea_0181 NC_009901.1 206697 208793 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 206697..208793 Shewanella pealeana ATCC 700345 5660582 YP_001500046.1 CDS Spea_0182 NC_009901.1 208877 210061 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 208877..210061 Shewanella pealeana ATCC 700345 5660583 YP_001500047.1 CDS rpsJ NC_009901.1 210423 210734 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 210423..210734 Shewanella pealeana ATCC 700345 5660584 YP_001500048.1 CDS rplC NC_009901.1 210762 211400 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 210762..211400 Shewanella pealeana ATCC 700345 5660585 YP_001500049.1 CDS rplD NC_009901.1 211418 212023 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 211418..212023 Shewanella pealeana ATCC 700345 5660586 YP_001500050.1 CDS rplW NC_009901.1 212020 212322 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 212020..212322 Shewanella pealeana ATCC 700345 5660587 YP_001500051.1 CDS rplB NC_009901.1 212340 213167 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 212340..213167 Shewanella pealeana ATCC 700345 5660588 YP_001500052.1 CDS rpsS NC_009901.1 213179 213457 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 213179..213457 Shewanella pealeana ATCC 700345 5660589 YP_001500053.1 CDS rplV NC_009901.1 213473 213805 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 213473..213805 Shewanella pealeana ATCC 700345 5660590 YP_001500054.1 CDS rpsC NC_009901.1 213815 214504 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 213815..214504 Shewanella pealeana ATCC 700345 5660591 YP_001500055.1 CDS rplP NC_009901.1 214516 214926 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 214516..214926 Shewanella pealeana ATCC 700345 5660592 YP_001500056.1 CDS Spea_0192 NC_009901.1 214926 215117 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 214926..215117 Shewanella pealeana ATCC 700345 5660593 YP_001500057.1 CDS rpsQ NC_009901.1 215117 215365 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 215117..215365 Shewanella pealeana ATCC 700345 5660594 YP_001500058.1 CDS rplN NC_009901.1 215545 215913 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 215545..215913 Shewanella pealeana ATCC 700345 5660595 YP_001500059.1 CDS rplX NC_009901.1 215925 216239 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 215925..216239 Shewanella pealeana ATCC 700345 5660596 YP_001500060.1 CDS rplE NC_009901.1 216253 216792 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 216253..216792 Shewanella pealeana ATCC 700345 5660597 YP_001500061.1 CDS rpsN NC_009901.1 216803 217108 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 216803..217108 Shewanella pealeana ATCC 700345 5660598 YP_001500062.1 CDS rpsH NC_009901.1 217133 217525 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 217133..217525 Shewanella pealeana ATCC 700345 5660599 YP_001500063.1 CDS rplF NC_009901.1 217536 218066 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 217536..218066 Shewanella pealeana ATCC 700345 5660600 YP_001500064.1 CDS rplR NC_009901.1 218078 218428 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 218078..218428 Shewanella pealeana ATCC 700345 5660601 YP_001500065.1 CDS rpsE NC_009901.1 218442 218948 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 218442..218948 Shewanella pealeana ATCC 700345 5660602 YP_001500066.1 CDS Spea_0202 NC_009901.1 219027 219140 D TIGRFAM: ribosomal protein L30; KEGG: sfr:Sfri_0166 ribosomal protein L30; 50S ribosomal protein L30 219027..219140 Shewanella pealeana ATCC 700345 5660603 YP_001500067.1 CDS rplO NC_009901.1 219142 219576 D late assembly protein; 50S ribosomal protein L15 219142..219576 Shewanella pealeana ATCC 700345 5660604 YP_001500068.1 CDS secY NC_009901.1 219584 220924 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 219584..220924 Shewanella pealeana ATCC 700345 5660605 YP_001500069.1 CDS rpsM NC_009901.1 221174 221530 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 221174..221530 Shewanella pealeana ATCC 700345 5664660 YP_001500070.1 CDS Spea_0207 NC_009901.1 221545 221937 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 221545..221937 Shewanella pealeana ATCC 700345 5660607 YP_001500071.1 CDS rpsD NC_009901.1 221973 222593 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 221973..222593 Shewanella pealeana ATCC 700345 5660608 YP_001500072.1 CDS Spea_0209 NC_009901.1 222618 223607 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 222618..223607 Shewanella pealeana ATCC 700345 5660609 YP_001500073.1 CDS rplQ NC_009901.1 223647 224039 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 223647..224039 Shewanella pealeana ATCC 700345 5660610 YP_001500074.1 CDS Spea_0211 NC_009901.1 225056 225544 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(225056..225544) Shewanella pealeana ATCC 700345 5660611 YP_001500075.1 CDS Spea_0212 NC_009901.1 225544 225741 R PFAM: Heme exporter protein D (CcmD); KEGG: shn:Shewana3_0228 heme exporter protein D (CcmD); Heme exporter protein CcmD complement(225544..225741) Shewanella pealeana ATCC 700345 5660612 YP_001500076.1 CDS Spea_0213 NC_009901.1 225741 226487 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: slo:Shew_0188 heme exporter protein CcmC; heme exporter protein CcmC complement(225741..226487) Shewanella pealeana ATCC 700345 5660613 YP_001500077.1 CDS Spea_0214 NC_009901.1 226489 227175 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: saz:Sama_0244 heme exporter protein CcmB; heme exporter protein CcmB complement(226489..227175) Shewanella pealeana ATCC 700345 5660614 YP_001500078.1 CDS Spea_0215 NC_009901.1 227185 227835 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(227185..227835) Shewanella pealeana ATCC 700345 5660615 YP_001500079.1 CDS Spea_0216 NC_009901.1 228156 228449 D PFAM: cytochrome c class I; KEGG: sfr:Sfri_0180 cytochrome c, class I; cytochrome c class I 228156..228449 Shewanella pealeana ATCC 700345 5660616 YP_001500080.1 CDS Spea_0217 NC_009901.1 229230 230483 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0192 TPR repeat-containing protein; hypothetical protein complement(229230..230483) Shewanella pealeana ATCC 700345 5660617 YP_001500081.1 CDS Spea_0218 NC_009901.1 230915 232894 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 230915..232894 Shewanella pealeana ATCC 700345 5660618 YP_001500082.1 CDS Spea_0219 NC_009901.1 232912 233466 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO_0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 232912..233466 Shewanella pealeana ATCC 700345 5660619 YP_001500083.1 CDS Spea_0220 NC_009901.1 233478 233945 D PFAM: cytochrome C biogenesis protein; KEGG: slo:Shew_0195 cytochrome c biogenesis protein; cytochrome C biogenesis protein 233478..233945 Shewanella pealeana ATCC 700345 5660620 YP_001500084.1 CDS Spea_0221 NC_009901.1 233942 234538 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0196 redoxin domain protein; alkyl hydroperoxide reductase 233942..234538 Shewanella pealeana ATCC 700345 5660621 YP_001500085.1 CDS Spea_0222 NC_009901.1 240710 241726 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(240710..241726) Shewanella pealeana ATCC 700345 5664663 YP_001500086.1 CDS Spea_0223 NC_009901.1 249650 250924 D TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: sbm:Shew185_4098 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 249650..250924 Shewanella pealeana ATCC 700345 5664668 YP_001500087.1 CDS Spea_0224 NC_009901.1 251001 251543 R PFAM: protein of unknown function DUF1439; KEGG: slo:Shew_0199 protein of unknown function DUF1439; hypothetical protein complement(251001..251543) Shewanella pealeana ATCC 700345 5660624 YP_001500088.1 CDS Spea_0225 NC_009901.1 251543 254179 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(251543..254179) Shewanella pealeana ATCC 700345 5660625 YP_001500089.1 CDS Spea_0226 NC_009901.1 254347 255498 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(254347..255498) Shewanella pealeana ATCC 700345 5660626 YP_001500090.1 CDS argC NC_009901.1 255774 256763 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 255774..256763 Shewanella pealeana ATCC 700345 5660627 YP_001500091.1 CDS Spea_0228 NC_009901.1 256782 257585 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 256782..257585 Shewanella pealeana ATCC 700345 5660628 YP_001500092.1 CDS Spea_0229 NC_009901.1 257598 258503 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 257598..258503 Shewanella pealeana ATCC 700345 5660629 YP_001500093.1 CDS Spea_0230 NC_009901.1 258575 259813 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 258575..259813 Shewanella pealeana ATCC 700345 5660630 YP_001500094.1 CDS Spea_0231 NC_009901.1 259924 261294 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 259924..261294 Shewanella pealeana ATCC 700345 5660631 YP_001500095.1 CDS Spea_0232 NC_009901.1 261398 263947 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sbm:Shew185_4090 penicillin-binding protein, 1A family; 1A family penicillin-binding protein complement(261398..263947) Shewanella pealeana ATCC 700345 5660632 YP_001500096.1 CDS Spea_0233 NC_009901.1 264383 265462 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: slo:Shew_0208 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 264383..265462 Shewanella pealeana ATCC 700345 5660633 YP_001500097.1 CDS Spea_0234 NC_009901.1 265450 266031 D PFAM: Fimbrial assembly family protein; KEGG: slo:Shew_0209 fimbrial assembly family protein; fimbrial assembly family protein 265450..266031 Shewanella pealeana ATCC 700345 5660634 YP_001500098.1 CDS Spea_0235 NC_009901.1 266028 266648 D PFAM: Pilus assembly protein PilO; KEGG: sfr:Sfri_0372 pilus assembly protein, PilO; pilus assembly protein PilO 266028..266648 Shewanella pealeana ATCC 700345 5660635 YP_001500099.1 CDS Spea_0236 NC_009901.1 266645 267163 D PFAM: Pilus assembly protein PilP; KEGG: slo:Shew_0211 pilus assembly protein, PilQ; pilus assembly protein PilP 266645..267163 Shewanella pealeana ATCC 700345 5660636 YP_001500100.1 CDS Spea_0237 NC_009901.1 267170 269236 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: slo:Shew_0212 type IV pilus secretin PilQ; type IV pilus secretin PilQ 267170..269236 Shewanella pealeana ATCC 700345 5660637 YP_001500101.1 CDS aroK NC_009901.1 269451 269966 D type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 269451..269966 Shewanella pealeana ATCC 700345 5660638 YP_001500102.1 CDS aroB NC_009901.1 269970 271049 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 269970..271049 Shewanella pealeana ATCC 700345 5660639 YP_001500103.1 CDS Spea_0240 NC_009901.1 271213 272694 D PFAM: Sporulation domain protein; KEGG: slo:Shew_0215 sporulation domain protein; sporulation domain-containing protein 271213..272694 Shewanella pealeana ATCC 700345 5660640 YP_001500104.1 CDS Spea_0241 NC_009901.1 272749 273588 D KEGG: slo:Shew_0216 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 272749..273588 Shewanella pealeana ATCC 700345 5660641 YP_001500105.1 CDS Spea_0242 NC_009901.1 273637 273822 R KEGG: sfr:Sfri_0379 hypothetical protein; hypothetical protein complement(273637..273822) Shewanella pealeana ATCC 700345 5660642 YP_001500106.1 CDS Spea_0243 NC_009901.1 273831 274172 R KEGG: slo:Shew_0218 hypothetical protein; hypothetical protein complement(273831..274172) Shewanella pealeana ATCC 700345 5660643 YP_001500107.1 CDS Spea_0244 NC_009901.1 274371 275045 D PFAM: ribulose-phosphate 3-epimerase; KEGG: slo:Shew_0219 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 274371..275045 Shewanella pealeana ATCC 700345 5660644 YP_001500108.1 CDS Spea_0245 NC_009901.1 275049 275747 D TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shw:Sputw3181_3841 phosphoglycolate phosphatase; phosphoglycolate phosphatase 275049..275747 Shewanella pealeana ATCC 700345 5660645 YP_001500109.1 CDS Spea_0246 NC_009901.1 275753 276763 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 275753..276763 Shewanella pealeana ATCC 700345 5660646 YP_001500110.1 CDS Spea_0247 NC_009901.1 276830 277699 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_0384 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(276830..277699) Shewanella pealeana ATCC 700345 5660647 YP_001500111.1 CDS Spea_0248 NC_009901.1 277842 278726 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfr:Sfri_0385 protein of unknown function DUF6, transmembrane; hypothetical protein 277842..278726 Shewanella pealeana ATCC 700345 5660648 YP_001500112.1 CDS Spea_0249 NC_009901.1 278764 279333 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: slo:Shew_0224 transport-associated; transport-associated complement(278764..279333) Shewanella pealeana ATCC 700345 5660649 YP_001500113.1 CDS Spea_0250 NC_009901.1 279330 279923 R TIGRFAM: phosphoheptose isomerase; KEGG: shw:Sputw3181_3836 phosphoheptose isomerase; phosphoheptose isomerase complement(279330..279923) Shewanella pealeana ATCC 700345 5660650 YP_001500114.1 CDS Spea_0251 NC_009901.1 279997 280335 R PFAM: protein of unknown function UPF0102; KEGG: sbm:Shew185_4070 protein of unknown function UPF0102; hypothetical protein complement(279997..280335) Shewanella pealeana ATCC 700345 5660651 YP_001500115.1 CDS Spea_0252 NC_009901.1 280449 282323 R PFAM: LppC family lipoprotein; KEGG: slo:Shew_0227 LppC family lipoprotein; LppC family lipoprotein complement(280449..282323) Shewanella pealeana ATCC 700345 5660652 YP_001500116.1 CDS Spea_0253 NC_009901.1 282426 283268 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: slo:Shew_0228 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 282426..283268 Shewanella pealeana ATCC 700345 5660653 YP_001500117.1 CDS Spea_0254 NC_009901.1 284069 285322 R KEGG: slo:Shew_3355 hypothetical protein; hypothetical protein complement(284069..285322) Shewanella pealeana ATCC 700345 5664669 YP_001500118.1 CDS Spea_0255 NC_009901.1 285322 286578 R KEGG: ppr:PBPRB1788 putative glycine betaine ABC transporter ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(285322..286578) Shewanella pealeana ATCC 700345 5660655 YP_001500119.1 CDS Spea_0256 NC_009901.1 286571 287470 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vha:VIBHAR_06563 hypothetical protein; binding-protein-dependent transport system inner membrane protein complement(286571..287470) Shewanella pealeana ATCC 700345 5660656 YP_001500120.1 CDS Spea_0257 NC_009901.1 287555 288559 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ppr:PBPRB1790 hypothetical ABC transporter, substrate binding protein; substrate-binding region of ABC-type glycine betaine transport system complement(287555..288559) Shewanella pealeana ATCC 700345 5660657 YP_001500121.1 CDS Spea_0258 NC_009901.1 289108 290049 R PFAM: LysR substrate-binding; KEGG: vfi:VFA1061 transcriptional regulators, LysR family; LysR family transcriptional regulator complement(289108..290049) Shewanella pealeana ATCC 700345 5660658 YP_001500122.1 CDS Spea_0259 NC_009901.1 290648 291535 D KEGG: esa:ESA_03864 hypothetical protein; hypothetical protein 290648..291535 Shewanella pealeana ATCC 700345 5660659 YP_001500123.1 CDS Spea_0260 NC_009901.1 291532 292218 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gur:Gura_1944 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 291532..292218 Shewanella pealeana ATCC 700345 5660660 YP_001500124.1 CDS Spea_0261 NC_009901.1 292227 294368 D PFAM: Aldehyde ferredoxin oxidoreductase; KEGG: pth:PTH_0610 aldehyde:ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 292227..294368 Shewanella pealeana ATCC 700345 5660661 YP_001500125.1 CDS Spea_0262 NC_009901.1 294373 294726 D hypothetical protein 294373..294726 Shewanella pealeana ATCC 700345 5660662 YP_001500126.1 CDS Spea_0263 NC_009901.1 295190 295933 D hypothetical protein 295190..295933 Shewanella pealeana ATCC 700345 5660663 YP_001500127.1 CDS Spea_0264 NC_009901.1 296091 297299 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF2364 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(296091..297299) Shewanella pealeana ATCC 700345 5660664 YP_001500128.1 CDS Spea_0265 NC_009901.1 297718 299088 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pin:Ping_2274 sensory transduction histidine kinase; diguanylate cyclase 297718..299088 Shewanella pealeana ATCC 700345 5660665 YP_001500129.1 CDS Spea_0266 NC_009901.1 299132 300001 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_3440 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(299132..300001) Shewanella pealeana ATCC 700345 5660666 YP_001500130.1 CDS Spea_0267 NC_009901.1 300361 300918 D catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 300361..300918 Shewanella pealeana ATCC 700345 5660667 YP_001500131.1 CDS Spea_0268 NC_009901.1 301314 301580 D PFAM: zinc finger DksA/TraR C4-type; KEGG: maq:Maqu_2983 transcriptional regulator, TraR/DksA family; hypothetical protein 301314..301580 Shewanella pealeana ATCC 700345 5660668 YP_001500132.1 CDS Spea_0269 NC_009901.1 301818 302948 D TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfr:Sfri_3427 alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase 301818..302948 Shewanella pealeana ATCC 700345 5660669 YP_001500133.1 CDS Spea_0270 NC_009901.1 303077 303916 D KEGG: sfr:Sfri_3426 carboxylesterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 303077..303916 Shewanella pealeana ATCC 700345 5660670 YP_001500134.1 CDS Spea_0271 NC_009901.1 304145 304471 D PFAM: small multidrug resistance protein; KEGG: sfr:Sfri_3425 small multidrug resistance protein; small multidrug resistance protein 304145..304471 Shewanella pealeana ATCC 700345 5660671 YP_001500135.1 CDS Spea_0272 NC_009901.1 304614 305261 R KEGG: pin:Ping_1347 hypothetical protein; hypothetical protein complement(304614..305261) Shewanella pealeana ATCC 700345 5660672 YP_001500136.1 CDS Spea_0273 NC_009901.1 305322 306017 R KEGG: pin:Ping_1348 hypothetical protein; hypothetical protein complement(305322..306017) Shewanella pealeana ATCC 700345 5660673 YP_001500137.1 CDS Spea_0274 NC_009901.1 306153 306620 R hypothetical protein complement(306153..306620) Shewanella pealeana ATCC 700345 5660674 YP_001500138.1 CDS Spea_0275 NC_009901.1 306836 307255 D KEGG: saz:Sama_3582 hypothetical protein; hypothetical protein 306836..307255 Shewanella pealeana ATCC 700345 5660675 YP_001500139.1 CDS Spea_0276 NC_009901.1 307433 309118 R KEGG: slo:Shew_0230 hypothetical protein; hypothetical protein complement(307433..309118) Shewanella pealeana ATCC 700345 5660676 YP_001500140.1 CDS Spea_0277 NC_009901.1 309273 310493 R PFAM: protein of unknown function DUF1212; KEGG: slo:Shew_0231 protein of unknown function DUF1212; hypothetical protein complement(309273..310493) Shewanella pealeana ATCC 700345 5660677 YP_001500141.1 CDS Spea_0278 NC_009901.1 310696 311106 D KEGG: sbl:Sbal_4091 hypothetical protein; hypothetical protein 310696..311106 Shewanella pealeana ATCC 700345 5660678 YP_001500142.1 CDS Spea_0279 NC_009901.1 311327 313660 D PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: slo:Shew_0233 radical SAM N-terminal domain protein; hypothetical protein 311327..313660 Shewanella pealeana ATCC 700345 5660679 YP_001500143.1 CDS Spea_0280 NC_009901.1 313840 314193 D PFAM: protein of unknown function DUF1232; KEGG: slo:Shew_0234 protein of unknown function DUF1232; hypothetical protein 313840..314193 Shewanella pealeana ATCC 700345 5660680 YP_001500144.1 CDS Spea_0281 NC_009901.1 314232 315161 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: vpa:VP1745 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(314232..315161) Shewanella pealeana ATCC 700345 5660681 YP_001500145.1 CDS Spea_0282 NC_009901.1 315351 315935 D KEGG: slo:Shew_0246 hypothetical protein; hypothetical protein 315351..315935 Shewanella pealeana ATCC 700345 5660682 YP_001500146.1 CDS Spea_0283 NC_009901.1 316110 316676 R KEGG: slo:Shew_0256 hypothetical protein; hypothetical protein complement(316110..316676) Shewanella pealeana ATCC 700345 5660683 YP_001500147.1 CDS Spea_0284 NC_009901.1 316835 318895 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0257 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(316835..318895) Shewanella pealeana ATCC 700345 5660684 YP_001500148.1 CDS Spea_0285 NC_009901.1 319053 319958 R KEGG: slo:Shew_0258 hypothetical protein; hypothetical protein complement(319053..319958) Shewanella pealeana ATCC 700345 5660685 YP_001500149.1 CDS Spea_0286 NC_009901.1 320108 322765 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vfi:VFA1016 sensory transduction protein kinase; histidine kinase complement(320108..322765) Shewanella pealeana ATCC 700345 5660686 YP_001500150.1 CDS Spea_0287 NC_009901.1 322868 323368 D KEGG: ppr:PBPRB1153 hypothetical protein; hypothetical protein 322868..323368 Shewanella pealeana ATCC 700345 5660687 YP_001500151.1 CDS Spea_0288 NC_009901.1 323371 324408 D KEGG: ppr:PBPRB1154 hypothetical protein; hypothetical protein 323371..324408 Shewanella pealeana ATCC 700345 5660688 YP_001500152.1 CDS Spea_0289 NC_009901.1 324408 324668 D hypothetical protein 324408..324668 Shewanella pealeana ATCC 700345 5660689 YP_001500153.1 CDS Spea_0290 NC_009901.1 324686 325642 R KEGG: esa:ESA_01836 hypothetical protein; hypothetical protein complement(324686..325642) Shewanella pealeana ATCC 700345 5660690 YP_001500154.1 CDS Spea_0291 NC_009901.1 325724 327178 R KEGG: ana:alr3755 unknown protein; hypothetical protein complement(325724..327178) Shewanella pealeana ATCC 700345 5660691 YP_001500155.1 CDS Spea_0292 NC_009901.1 327198 327524 R KEGG: vfi:VFA1013 hypothetical protein; hypothetical protein complement(327198..327524) Shewanella pealeana ATCC 700345 5660692 YP_001500156.1 CDS Spea_0293 NC_009901.1 327573 328862 R KEGG: afm:AFUA_3G10400 dolichol-phosphate mannosyltransferase, putative; hypothetical protein complement(327573..328862) Shewanella pealeana ATCC 700345 5660693 YP_001500157.1 CDS Spea_0294 NC_009901.1 329048 330052 R hypothetical protein complement(329048..330052) Shewanella pealeana ATCC 700345 5660694 YP_001500158.1 CDS Spea_0295 NC_009901.1 330042 331430 R KEGG: esa:ESA_01830 hypothetical protein; hypothetical protein complement(330042..331430) Shewanella pealeana ATCC 700345 5660695 YP_001500159.1 CDS Spea_0296 NC_009901.1 331453 332847 R KEGG: esa:ESA_01831 hypothetical protein; hypothetical protein complement(331453..332847) Shewanella pealeana ATCC 700345 5660696 YP_001500160.1 CDS Spea_0297 NC_009901.1 332858 334183 R KEGG: ava:Ava_1569 hypothetical protein; hypothetical protein complement(332858..334183) Shewanella pealeana ATCC 700345 5660697 YP_001500161.1 CDS Spea_0298 NC_009901.1 334170 336026 R PFAM: glycosyl transferase family 2; KEGG: esa:ESA_01833 hypothetical protein; cellulose synthase complement(334170..336026) Shewanella pealeana ATCC 700345 5660698 YP_001500162.1 CDS Spea_0299 NC_009901.1 336076 336519 R KEGG: vpa:VPA1048 putative anti-sigma F factor antagonist; putative anti-sigma regulatory factor complement(336076..336519) Shewanella pealeana ATCC 700345 5660699 YP_001500163.1 CDS Spea_0300 NC_009901.1 336532 337725 R PFAM: Nucleotidyl transferase; KEGG: ana:alr3400 mannose-1-phosphate guanyltransferase; nucleotidyl transferase complement(336532..337725) Shewanella pealeana ATCC 700345 5660700 YP_001500164.1 CDS Spea_0301 NC_009901.1 337739 338071 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rsh:Rsph17029_0151 anti-sigma-factor antagonist; anti-sigma-factor antagonist complement(337739..338071) Shewanella pealeana ATCC 700345 5660701 YP_001500165.1 CDS Spea_0302 NC_009901.1 338086 339288 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: vha:VIBHAR_05599 hypothetical protein; response regulator receiver modulated serine phosphatase complement(338086..339288) Shewanella pealeana ATCC 700345 5660702 YP_001500166.1 CDS Spea_0303 NC_009901.1 339521 339913 R KEGG: slo:Shew_0259 hypothetical protein; hypothetical protein complement(339521..339913) Shewanella pealeana ATCC 700345 5660703 YP_001500167.1 CDS Spea_0304 NC_009901.1 340442 343084 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3091 TonB-dependent receptor; TonB-dependent receptor 340442..343084 Shewanella pealeana ATCC 700345 5660704 YP_001500168.1 CDS Spea_0305 NC_009901.1 343190 345226 D PFAM: EAL domain protein; phosphotransferase system EIIC; KEGG: vha:VIBHAR_05166 hypothetical protein; diguanylate phosphodiesterase 343190..345226 Shewanella pealeana ATCC 700345 5660705 YP_001500169.1 CDS Spea_0306 NC_009901.1 345407 346249 D KEGG: slo:Shew_0260 hypothetical protein; hypothetical protein 345407..346249 Shewanella pealeana ATCC 700345 5660706 YP_001500170.1 CDS Spea_0307 NC_009901.1 346417 346680 D KEGG: slo:Shew_0261 hypothetical protein; hypothetical protein 346417..346680 Shewanella pealeana ATCC 700345 5660707 YP_001500171.1 CDS Spea_0308 NC_009901.1 346748 348199 D PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein 346748..348199 Shewanella pealeana ATCC 700345 5660708 YP_001500172.1 CDS Spea_0309 NC_009901.1 348231 348527 D KEGG: shn:Shewana3_3840 hypothetical protein; hypothetical protein 348231..348527 Shewanella pealeana ATCC 700345 5660709 YP_001500173.1 CDS Spea_0310 NC_009901.1 348616 349644 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 348616..349644 Shewanella pealeana ATCC 700345 5660710 YP_001500174.1 CDS Spea_0311 NC_009901.1 349770 350381 D PFAM: DSBA oxidoreductase; KEGG: slo:Shew_0265 DsbA oxidoreductase; DSBA oxidoreductase 349770..350381 Shewanella pealeana ATCC 700345 5660711 YP_001500175.1 CDS Spea_0312 NC_009901.1 350570 350782 D PFAM: protein of unknown function DUF1107; KEGG: shw:Sputw3181_3796 protein of unknown function DUF1107; hypothetical protein 350570..350782 Shewanella pealeana ATCC 700345 5660712 YP_001500176.1 CDS Spea_0313 NC_009901.1 350796 350999 R PFAM: protein of unknown function DUF904; KEGG: slo:Shew_0267 protein of unknown function DUF904; hypothetical protein complement(350796..350999) Shewanella pealeana ATCC 700345 5660713 YP_001500177.1 CDS Spea_0314 NC_009901.1 351180 352661 D PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: sbm:Shew185_4032 Na+ antiporter NhaC; Na+/H+ antiporter NhaC 351180..352661 Shewanella pealeana ATCC 700345 5660714 YP_001500178.1 CDS Spea_0315 NC_009901.1 352769 353389 R KEGG: slo:Shew_0270 hypothetical protein; hypothetical protein complement(352769..353389) Shewanella pealeana ATCC 700345 5660715 YP_001500179.1 CDS Spea_0316 NC_009901.1 353631 354974 D KEGG: slo:Shew_0271 phospholipase; phospholipase 353631..354974 Shewanella pealeana ATCC 700345 5660716 YP_001500180.1 CDS Spea_0317 NC_009901.1 355250 356146 D KEGG: vvy:VVA0223 hypothetical protein; hypothetical protein 355250..356146 Shewanella pealeana ATCC 700345 5660717 YP_001500181.1 CDS Spea_0318 NC_009901.1 356147 357073 D PFAM: alpha/beta hydrolase fold; KEGG: ppr:PBPRB0984 hypothetical protein; alpha/beta hydrolase fold protein 356147..357073 Shewanella pealeana ATCC 700345 5660718 YP_001500182.1 CDS Spea_0319 NC_009901.1 357070 358371 D KEGG: vpa:VP1355 hypothetical protein; hypothetical protein 357070..358371 Shewanella pealeana ATCC 700345 5660719 YP_001500183.1 CDS Spea_0320 NC_009901.1 358368 359618 D KEGG: vpa:VP1356 hypothetical protein; hypothetical protein 358368..359618 Shewanella pealeana ATCC 700345 5660720 YP_001500184.1 CDS Spea_0321 NC_009901.1 359683 360426 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0272 cupin 2, conserved barrel domain protein; cupin complement(359683..360426) Shewanella pealeana ATCC 700345 5660721 YP_001500185.1 CDS Spea_0322 NC_009901.1 360604 361692 R KEGG: son:SO_1411 hypothetical protein; hypothetical protein complement(360604..361692) Shewanella pealeana ATCC 700345 5660722 YP_001500186.1 CDS Spea_0323 NC_009901.1 361966 363105 R KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein complement(361966..363105) Shewanella pealeana ATCC 700345 5660723 YP_001500187.1 CDS Spea_0324 NC_009901.1 363153 363521 R KEGG: slo:Shew_0275 tetraheme cytochrome c, putative; tetraheme cytochrome c complement(363153..363521) Shewanella pealeana ATCC 700345 5660724 YP_001500188.1 CDS Spea_0325 NC_009901.1 363521 365044 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_0276 flavocytochrome c; flavocytochrome c complement(363521..365044) Shewanella pealeana ATCC 700345 5660725 YP_001500189.1 CDS Spea_0326 NC_009901.1 365389 366180 D PFAM: regulatory protein TetR; KEGG: sbm:Shew185_2533 transcriptional regulator, TetR family; TetR family transcriptional regulator 365389..366180 Shewanella pealeana ATCC 700345 5660726 YP_001500190.1 CDS Spea_0327 NC_009901.1 366353 367444 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 366353..367444 Shewanella pealeana ATCC 700345 5660727 YP_001500191.1 CDS Spea_0328 NC_009901.1 367542 367940 R hypothetical protein complement(367542..367940) Shewanella pealeana ATCC 700345 5660728 YP_001500192.1 CDS Spea_0329 NC_009901.1 368228 369178 R PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase complement(368228..369178) Shewanella pealeana ATCC 700345 5660729 YP_001500193.1 CDS Spea_0330 NC_009901.1 369186 370091 R PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_0282 phospholipid/glycerol acyltransferase; putative acyltransferase complement(369186..370091) Shewanella pealeana ATCC 700345 5660730 YP_001500194.1 CDS Spea_0331 NC_009901.1 370305 371834 R PFAM: EAL domain protein; KEGG: swi:Swit_2925 EAL domain protein; EAL domain-containing protein complement(370305..371834) Shewanella pealeana ATCC 700345 5660731 YP_001500195.1 CDS Spea_0332 NC_009901.1 372147 373667 R KEGG: sbl:Sbal_4042 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(372147..373667) Shewanella pealeana ATCC 700345 5660732 YP_001500196.1 CDS Spea_0333 NC_009901.1 374320 376035 D PFAM: KAP P-loop domain protein; KEGG: sdn:Sden_3526 kap P-loop; KAP P-loop domain-containing protein 374320..376035 Shewanella pealeana ATCC 700345 5660733 YP_001500197.1 CDS Spea_0334 NC_009901.1 376866 378122 R PFAM: histidine kinase A domain protein; KEGG: vha:VIBHAR_05571 hypothetical protein; histidine kinase complement(376866..378122) Shewanella pealeana ATCC 700345 5660734 YP_001500198.1 CDS Spea_0335 NC_009901.1 378094 378762 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vha:VIBHAR_05570 hypothetical protein; two component transcriptional regulator complement(378094..378762) Shewanella pealeana ATCC 700345 5660735 YP_001500199.1 CDS Spea_0336 NC_009901.1 378856 380070 D KEGG: vha:VIBHAR_05569 hypothetical protein; hypothetical protein 378856..380070 Shewanella pealeana ATCC 700345 5660736 YP_001500200.1 CDS Spea_0337 NC_009901.1 380368 381921 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: vpa:VPA0596 putative methyl-accepting chemotaxis protein; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 380368..381921 Shewanella pealeana ATCC 700345 5660737 YP_001500201.1 CDS Spea_0338 NC_009901.1 382112 383764 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO_3299 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase complement(382112..383764) Shewanella pealeana ATCC 700345 5660738 YP_001500202.1 CDS Spea_0339 NC_009901.1 383792 384142 R KEGG: son:SO_3300 cytochrome c; cytochrome c complement(383792..384142) Shewanella pealeana ATCC 700345 5660739 YP_001500203.1 CDS Spea_0340 NC_009901.1 384142 385644 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO_3301 flavocytochrome c flavin subunit; flavocytochrome c complement(384142..385644) Shewanella pealeana ATCC 700345 5660740 YP_001500204.1 CDS Spea_0341 NC_009901.1 385905 386753 D PFAM: regulatory protein LysR; KEGG: son:SO_3297 transcriptional regulator, LysR family; LysR family transcriptional regulator 385905..386753 Shewanella pealeana ATCC 700345 5660741 YP_001500205.1 CDS Spea_0342 NC_009901.1 387020 388027 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_0406 transcriptional regulator, LysR family; LysR family transcriptional regulator 387020..388027 Shewanella pealeana ATCC 700345 5660742 YP_001500206.1 CDS Spea_0343 NC_009901.1 388225 389097 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(388225..389097) Shewanella pealeana ATCC 700345 5660743 YP_001500207.1 CDS Spea_0344 NC_009901.1 389278 390759 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 389278..390759 Shewanella pealeana ATCC 700345 5660744 YP_001500208.1 CDS Spea_0345 NC_009901.1 391294 393003 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 391294..393003 Shewanella pealeana ATCC 700345 5660745 YP_001500209.1 CDS Spea_0346 NC_009901.1 393081 393347 D KEGG: shw:Sputw3181_3753 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 393081..393347 Shewanella pealeana ATCC 700345 5660746 YP_001500210.1 CDS Spea_0347 NC_009901.1 393352 394281 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 393352..394281 Shewanella pealeana ATCC 700345 5660747 YP_001500211.1 CDS Spea_0348 NC_009901.1 394506 396353 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 394506..396353 Shewanella pealeana ATCC 700345 5660748 YP_001500212.1 CDS Spea_0349 NC_009901.1 396382 397932 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 396382..397932 Shewanella pealeana ATCC 700345 5660749 YP_001500213.1 CDS Spea_0350 NC_009901.1 398269 399405 D PFAM: aminotransferase class V; KEGG: son:SO_4343 aminotransferase, class V; serine--pyruvate transaminase 398269..399405 Shewanella pealeana ATCC 700345 5660750 YP_001500214.1 CDS Spea_0351 NC_009901.1 399637 401622 R TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdn:Sden_0470 TonB-dependent copper receptor; TonB-dependent copper receptor complement(399637..401622) Shewanella pealeana ATCC 700345 5660751 YP_001500215.1 CDS Spea_0352 NC_009901.1 401814 403190 R PFAM: sodium:neurotransmitter symporter; KEGG: slo:Shew_0300 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter complement(401814..403190) Shewanella pealeana ATCC 700345 5660752 YP_001500216.1 CDS Spea_0353 NC_009901.1 403619 404107 R PFAM: regulatory protein AsnC/Lrp family; KEGG: slo:Shew_0301 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(403619..404107) Shewanella pealeana ATCC 700345 5660753 YP_001500217.1 CDS Spea_0354 NC_009901.1 404214 404966 R PFAM: phosphoesterase PA-phosphatase related; KEGG: shn:Shewana3_0364 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(404214..404966) Shewanella pealeana ATCC 700345 5660754 YP_001500218.1 CDS Spea_0355 NC_009901.1 405421 406278 D PFAM: protein of unknown function DUF417; KEGG: mmr:Mmar10_2310 protein of unknown function DUF417; hypothetical protein 405421..406278 Shewanella pealeana ATCC 700345 5660755 YP_001500219.1 CDS Spea_0356 NC_009901.1 406354 406608 R PFAM: protein of unknown function DUF526; KEGG: slo:Shew_0304 protein of unknown function DUF526; hypothetical protein complement(406354..406608) Shewanella pealeana ATCC 700345 5660756 YP_001500220.1 CDS Spea_0357 NC_009901.1 406800 409892 R PFAM: acriflavin resistance protein; KEGG: shn:Shewana3_0371 acriflavin resistance protein; acriflavin resistance protein complement(406800..409892) Shewanella pealeana ATCC 700345 5660757 YP_001500221.1 CDS Spea_0358 NC_009901.1 409908 411026 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(409908..411026) Shewanella pealeana ATCC 700345 5660758 YP_001500222.1 CDS Spea_0359 NC_009901.1 411042 411653 R PFAM: regulatory protein TetR; KEGG: son:SO_4326 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(411042..411653) Shewanella pealeana ATCC 700345 5660759 YP_001500223.1 CDS Spea_0360 NC_009901.1 411859 413874 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: sbm:Shew185_3990 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 411859..413874 Shewanella pealeana ATCC 700345 5660760 YP_001500224.1 CDS Spea_0361 NC_009901.1 413908 416529 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(413908..416529) Shewanella pealeana ATCC 700345 5660761 YP_001500225.1 CDS Spea_0362 NC_009901.1 417531 419450 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: slo:Shew_0307 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(417531..419450) Shewanella pealeana ATCC 700345 5664673 YP_001500226.1 CDS Spea_0363 NC_009901.1 419458 420165 R KEGG: slo:Shew_0308 hypothetical protein; hypothetical protein complement(419458..420165) Shewanella pealeana ATCC 700345 5660763 YP_001500227.1 CDS Spea_0364 NC_009901.1 420184 420789 R PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_0309 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(420184..420789) Shewanella pealeana ATCC 700345 5660764 YP_001500228.1 CDS Spea_0365 NC_009901.1 420786 422213 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: slo:Shew_0310 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein complement(420786..422213) Shewanella pealeana ATCC 700345 5660765 YP_001500229.1 CDS Spea_0366 NC_009901.1 422248 423630 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0311 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein complement(422248..423630) Shewanella pealeana ATCC 700345 5660766 YP_001500230.1 CDS Spea_0367 NC_009901.1 423627 425804 R PFAM: ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: slo:Shew_0312 ABC transporter-related protein; ABC transporter-like protein complement(423627..425804) Shewanella pealeana ATCC 700345 5660767 YP_001500231.1 CDS Spea_0368 NC_009901.1 425898 442232 R PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Cadherin; Na-Ca exchanger/integrin-beta4; KEGG: eca:ECA3266 putative hemagglutinin/hemolysin-related protein; cadherin complement(425898..442232) Shewanella pealeana ATCC 700345 5660768 YP_001500232.1 CDS Spea_0369 NC_009901.1 442471 448674 R TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: slo:Shew_0314 putative outer membrane adhesin like proteiin; outer membrane adhesin-like protein complement(442471..448674) Shewanella pealeana ATCC 700345 5660769 YP_001500233.1 CDS Spea_0370 NC_009901.1 448956 450125 R PFAM: HemY domain protein; KEGG: slo:Shew_0315 HemY domain protein; HemY domain-containing protein complement(448956..450125) Shewanella pealeana ATCC 700345 5660770 YP_001500234.1 CDS Spea_0371 NC_009901.1 450125 451318 R PFAM: protein of unknown function DUF513 hemX; KEGG: slo:Shew_0316 protein of unknown function DUF513, HemX; hypothetical protein complement(450125..451318) Shewanella pealeana ATCC 700345 5660771 YP_001500235.1 CDS Spea_0372 NC_009901.1 451380 452111 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: shw:Sputw3181_3727 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 complement(451380..452111) Shewanella pealeana ATCC 700345 5660772 YP_001500236.1 CDS hemC NC_009901.1 452118 453050 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(452118..453050) Shewanella pealeana ATCC 700345 5660773 YP_001500237.1 CDS cyaA NC_009901.1 453249 455672 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 453249..455672 Shewanella pealeana ATCC 700345 5660774 YP_001500238.1 CDS Spea_0375 NC_009901.1 455758 456087 R PFAM: Frataxin family protein; KEGG: sbm:Shew185_3976 frataxin family protein; frataxin family protein complement(455758..456087) Shewanella pealeana ATCC 700345 5660775 YP_001500239.1 CDS Spea_0376 NC_009901.1 456462 456662 D KEGG: sbl:Sbal_3997 hypothetical protein; hypothetical protein 456462..456662 Shewanella pealeana ATCC 700345 5660776 YP_001500240.1 CDS Spea_0377 NC_009901.1 456668 457912 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: slo:Shew_0322 diaminopimelate decarboxylase; diaminopimelate decarboxylase 456668..457912 Shewanella pealeana ATCC 700345 5660777 YP_001500241.1 CDS dapF NC_009901.1 457970 458806 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 457970..458806 Shewanella pealeana ATCC 700345 5660778 YP_001500242.1 CDS Spea_0379 NC_009901.1 458803 459435 D PFAM: protein of unknown function DUF484; KEGG: slo:Shew_0324 protein of unknown function DUF484; hypothetical protein 458803..459435 Shewanella pealeana ATCC 700345 5660779 YP_001500243.1 CDS Spea_0380 NC_009901.1 459448 460362 D TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbl:Sbal_3993 tyrosine recombinase XerC; tyrosine recombinase XerC 459448..460362 Shewanella pealeana ATCC 700345 5660780 YP_001500244.1 CDS Spea_0381 NC_009901.1 460359 461075 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_0395 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 460359..461075 Shewanella pealeana ATCC 700345 5660781 YP_001500245.1 CDS Spea_0382 NC_009901.1 461183 461647 D PFAM: Egg lysin (Sperm-lysin); KEGG: saz:Sama_3237 lipoprotein, putative; hypothetical protein 461183..461647 Shewanella pealeana ATCC 700345 5660782 YP_001500246.1 CDS Spea_0383 NC_009901.1 461706 462428 R PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: sbm:Shew185_3967 hemerythrin HHE cation binding domain protein; hypothetical protein complement(461706..462428) Shewanella pealeana ATCC 700345 5660783 YP_001500247.1 CDS Spea_0384 NC_009901.1 462769 463182 D hypothetical protein 462769..463182 Shewanella pealeana ATCC 700345 5660784 YP_001500248.1 CDS Spea_0385 NC_009901.1 463306 464730 D PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein 463306..464730 Shewanella pealeana ATCC 700345 5660785 YP_001500249.1 CDS Spea_0386 NC_009901.1 464727 465953 D KEGG: cps:CPS_1958 putative RND efflux system protein, MFP subunit; hypothetical protein 464727..465953 Shewanella pealeana ATCC 700345 5660786 YP_001500250.1 CDS Spea_0387 NC_009901.1 465965 469120 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1959 putative RND efflux system protein; CzcA family heavy metal efflux protein 465965..469120 Shewanella pealeana ATCC 700345 5660787 YP_001500251.1 CDS Spea_0388 NC_009901.1 469272 470804 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase; leucyl aminopeptidase complement(469272..470804) Shewanella pealeana ATCC 700345 5660788 YP_001500252.1 CDS fis NC_009901.1 471188 471493 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(471188..471493) Shewanella pealeana ATCC 700345 5660789 YP_001500253.1 CDS Spea_0390 NC_009901.1 471511 472479 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: slo:Shew_0330 putative TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein complement(471511..472479) Shewanella pealeana ATCC 700345 5660790 YP_001500254.1 CDS prmA NC_009901.1 472631 473512 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(472631..473512) Shewanella pealeana ATCC 700345 5660791 YP_001500255.1 CDS Spea_0392 NC_009901.1 473880 474584 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 473880..474584 Shewanella pealeana ATCC 700345 5660792 YP_001500256.1 CDS Spea_0393 NC_009901.1 474746 475420 D PFAM: fumarate reductase respiratory complex transmembrane subunit; KEGG: sbl:Sbal_3936 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex transmembrane subunit 474746..475420 Shewanella pealeana ATCC 700345 5660793 YP_001500257.1 CDS Spea_0394 NC_009901.1 475477 477477 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 475477..477477 Shewanella pealeana ATCC 700345 5660794 YP_001500258.1 CDS frdB NC_009901.1 477474 478217 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 477474..478217 Shewanella pealeana ATCC 700345 5660795 YP_001500259.1 CDS Spea_0396 NC_009901.1 478350 479264 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_0336 transcriptional regulator, LysR family; LysR family transcriptional regulator 478350..479264 Shewanella pealeana ATCC 700345 5660796 YP_001500260.1 CDS rho NC_009901.1 479324 480589 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(479324..480589) Shewanella pealeana ATCC 700345 5660797 YP_001500261.1 CDS Spea_0398 NC_009901.1 480827 481153 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO_0406 thioredoxin 1; thioredoxin complement(480827..481153) Shewanella pealeana ATCC 700345 5660798 YP_001500262.1 CDS Spea_0399 NC_009901.1 481557 482867 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 481557..482867 Shewanella pealeana ATCC 700345 5660799 YP_001500263.1 CDS Spea_0400 NC_009901.1 482881 483792 D PFAM: Ppx/GppA phosphatase; KEGG: slo:Shew_0340 Ppx/GppA phosphatase; Ppx/GppA phosphatase 482881..483792 Shewanella pealeana ATCC 700345 5660800 YP_001500264.1 CDS Spea_0401 NC_009901.1 484439 487420 D PFAM: TonB-dependent receptor; Cna B domain protein; TonB-dependent receptor plug; KEGG: saz:Sama_3213 putative oar protein; TonB-dependent receptor 484439..487420 Shewanella pealeana ATCC 700345 5660801 YP_001500265.1 CDS Spea_0402 NC_009901.1 487518 487916 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 487518..487916 Shewanella pealeana ATCC 700345 5660802 YP_001500266.1 CDS Spea_0403 NC_009901.1 488000 488752 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 488000..488752 Shewanella pealeana ATCC 700345 5660803 YP_001500267.1 CDS Spea_0404 NC_009901.1 489235 491925 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_0341 TonB-dependent receptor; TonB-dependent receptor 489235..491925 Shewanella pealeana ATCC 700345 5660804 YP_001500268.1 CDS Spea_0405 NC_009901.1 492003 492536 R KEGG: slo:Shew_0342 hypothetical protein; hypothetical protein complement(492003..492536) Shewanella pealeana ATCC 700345 5660805 YP_001500269.1 CDS Spea_0406 NC_009901.1 499518 500534 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(499518..500534) Shewanella pealeana ATCC 700345 5664676 YP_001500270.1 CDS Spea_0407 NC_009901.1 500954 501343 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: slo:Shew_3444 mutator MutT protein; mutator MutT protein complement(500954..501343) Shewanella pealeana ATCC 700345 5660807 YP_001500271.1 CDS Spea_0408 NC_009901.1 501340 501579 R PFAM: protein of unknown function DUF329; KEGG: slo:Shew_3443 protein of unknown function DUF329; hypothetical protein complement(501340..501579) Shewanella pealeana ATCC 700345 5660808 YP_001500272.1 CDS Spea_0409 NC_009901.1 501639 502373 R PFAM: protein of unknown function DUF1342; KEGG: slo:Shew_3442 protein of unknown function DUF1342; hypothetical protein complement(501639..502373) Shewanella pealeana ATCC 700345 5660809 YP_001500273.1 CDS coaE NC_009901.1 502382 502987 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(502382..502987) Shewanella pealeana ATCC 700345 5660810 YP_001500274.1 CDS Spea_0411 NC_009901.1 503007 503918 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: sbm:Shew185_3944 prepilin peptidase; prepilin peptidase complement(503007..503918) Shewanella pealeana ATCC 700345 5660811 YP_001500275.1 CDS Spea_0412 NC_009901.1 503951 505219 R PFAM: type II secretion system protein; KEGG: shn:Shewana3_0418 type II secretion system protein; type II secretion system protein complement(503951..505219) Shewanella pealeana ATCC 700345 5660812 YP_001500276.1 CDS Spea_0413 NC_009901.1 505266 506972 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: slo:Shew_3438 type IV-A pilus assembly ATPase PilB; type IV-A pilus assembly ATPase PilB complement(505266..506972) Shewanella pealeana ATCC 700345 5660813 YP_001500277.1 CDS Spea_0414 NC_009901.1 507007 507453 R KEGG: sbl:Sbal_3918 methylation site containing protein; methylation site containing protein complement(507007..507453) Shewanella pealeana ATCC 700345 5660814 YP_001500278.1 CDS Spea_0415 NC_009901.1 508211 509095 R KEGG: shn:Shewana3_0422 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(508211..509095) Shewanella pealeana ATCC 700345 5660815 YP_001500279.1 CDS Spea_0416 NC_009901.1 509338 509880 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: slo:Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 509338..509880 Shewanella pealeana ATCC 700345 5660816 YP_001500280.1 CDS Spea_0417 NC_009901.1 509947 510795 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 509947..510795 Shewanella pealeana ATCC 700345 5660817 YP_001500281.1 CDS pdhR NC_009901.1 511158 511910 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 511158..511910 Shewanella pealeana ATCC 700345 5660818 YP_001500282.1 CDS aceE NC_009901.1 512019 514679 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 512019..514679 Shewanella pealeana ATCC 700345 5660819 YP_001500283.1 CDS aceF NC_009901.1 514693 516555 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 514693..516555 Shewanella pealeana ATCC 700345 5660820 YP_001500284.1 CDS Spea_0421 NC_009901.1 516799 518226 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 516799..518226 Shewanella pealeana ATCC 700345 5660821 YP_001500285.1 CDS Spea_0422 NC_009901.1 518372 522850 D KEGG: slo:Shew_3428 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 518372..522850 Shewanella pealeana ATCC 700345 5660822 YP_001500286.1 CDS Spea_0423 NC_009901.1 522943 525159 D PFAM: Patatin; surface antigen variable number repeat protein; KEGG: sbl:Sbal_3909 patatin; patatin 522943..525159 Shewanella pealeana ATCC 700345 5660823 YP_001500287.1 CDS Spea_0424 NC_009901.1 525248 525916 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(525248..525916) Shewanella pealeana ATCC 700345 5660824 YP_001500288.1 CDS Spea_0425 NC_009901.1 526341 528938 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 526341..528938 Shewanella pealeana ATCC 700345 5660825 YP_001500289.1 CDS Spea_0426 NC_009901.1 529135 529602 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(529135..529602) Shewanella pealeana ATCC 700345 5660826 YP_001500290.1 CDS hemE NC_009901.1 530134 531198 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 530134..531198 Shewanella pealeana ATCC 700345 5660827 YP_001500291.1 CDS Spea_0428 NC_009901.1 531806 534379 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: shn:Shewana3_0436 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 531806..534379 Shewanella pealeana ATCC 700345 5660828 YP_001500292.1 CDS Spea_0429 NC_009901.1 534487 535290 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: shm:Shewmr7_3588 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 534487..535290 Shewanella pealeana ATCC 700345 5660829 YP_001500293.1 CDS Spea_0430 NC_009901.1 535323 535541 R KEGG: shn:Shewana3_0438 hypothetical protein; hypothetical protein complement(535323..535541) Shewanella pealeana ATCC 700345 5660830 YP_001500294.1 CDS Spea_0431 NC_009901.1 536172 537473 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(536172..537473) Shewanella pealeana ATCC 700345 5660831 YP_001500295.1 CDS purH NC_009901.1 537651 539240 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(537651..539240) Shewanella pealeana ATCC 700345 5660832 YP_001500296.1 CDS zntR NC_009901.1 539597 540118 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 539597..540118 Shewanella pealeana ATCC 700345 5660833 YP_001500297.1 CDS Spea_0434 NC_009901.1 540140 541525 D PFAM: permease; KEGG: slo:Shew_3410 permease; permease 540140..541525 Shewanella pealeana ATCC 700345 5660834 YP_001500298.1 CDS Spea_0435 NC_009901.1 541687 542343 D PFAM: DSBA oxidoreductase; KEGG: maq:Maqu_3568 DsbA oxidoreductase; DSBA oxidoreductase 541687..542343 Shewanella pealeana ATCC 700345 5660835 YP_001500299.1 CDS Spea_0436 NC_009901.1 542356 542751 D PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: gfo:GFO_1625 protein containing DUF393; putative thiol-disulfide oxidoreductase DCC 542356..542751 Shewanella pealeana ATCC 700345 5660836 YP_001500300.1 CDS Spea_0437 NC_009901.1 543585 544166 D PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; molybdopterin oxidoreductase Fe4S4 region 543585..544166 Shewanella pealeana ATCC 700345 5660837 YP_001500301.1 CDS Spea_0438 NC_009901.1 544215 546605 D KEGG: sbm:Shew185_0099 molybdopterin oxidoreductase Fe4s4 region; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 544215..546605 Shewanella pealeana ATCC 700345 5660838 YP_001500302.1 CDS Spea_0439 NC_009901.1 546608 547510 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbm:Shew185_0101 formate dehydrogenase, beta subunit; formate dehydrogenase subunit beta 546608..547510 Shewanella pealeana ATCC 700345 5660839 YP_001500303.1 CDS Spea_0440 NC_009901.1 547516 548160 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_0104 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 547516..548160 Shewanella pealeana ATCC 700345 5660840 YP_001500304.1 CDS Spea_0441 NC_009901.1 548163 549134 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO_0104 fdhE protein; formate dehydrogenase accessory protein FdhE 548163..549134 Shewanella pealeana ATCC 700345 5660841 YP_001500305.1 CDS Spea_0442 NC_009901.1 549258 550748 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 549258..550748 Shewanella pealeana ATCC 700345 5660842 YP_001500306.1 CDS Spea_0443 NC_009901.1 550745 552652 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: shn:Shewana3_0107 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 550745..552652 Shewanella pealeana ATCC 700345 5660843 YP_001500307.1 CDS Spea_0444 NC_009901.1 553011 553874 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 553011..553874 Shewanella pealeana ATCC 700345 5664677 YP_001500308.1 CDS Spea_0445 NC_009901.1 553920 555191 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: shn:Shewana3_0109 protein of unknown function DUF395, YeeE/YedE; putative inner membrane protein 553920..555191 Shewanella pealeana ATCC 700345 5660845 YP_001500309.1 CDS Spea_0446 NC_009901.1 555278 555514 D PFAM: SirA family protein; KEGG: cko:CKO_01008 hypothetical protein; hypothetical protein 555278..555514 Shewanella pealeana ATCC 700345 5660846 YP_001500310.1 CDS Spea_0447 NC_009901.1 555907 556635 R PFAM: protein of unknown function DUF28; KEGG: sbm:Shew185_1289 protein of unknown function DUF28; hypothetical protein complement(555907..556635) Shewanella pealeana ATCC 700345 5660847 YP_001500311.1 CDS Spea_0448 NC_009901.1 556787 557707 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vha:VIBHAR_01722 hypothetical protein; LysR family transcriptional regulator complement(556787..557707) Shewanella pealeana ATCC 700345 5660848 YP_001500312.1 CDS Spea_0449 NC_009901.1 557869 558234 D KEGG: vha:VIBHAR_05268 hypothetical protein; hypothetical protein 557869..558234 Shewanella pealeana ATCC 700345 5660849 YP_001500313.1 CDS Spea_0450 NC_009901.1 558677 560740 D KEGG: slo:Shew_2580 hypothetical protein; hypothetical protein 558677..560740 Shewanella pealeana ATCC 700345 5660850 YP_001500314.1 CDS Spea_0451 NC_009901.1 561005 561463 D PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_3397 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 561005..561463 Shewanella pealeana ATCC 700345 5660851 YP_001500315.1 CDS Spea_0452 NC_009901.1 561549 561794 R KEGG: slo:Shew_3396 hypothetical protein; hypothetical protein complement(561549..561794) Shewanella pealeana ATCC 700345 5660852 YP_001500316.1 CDS Spea_0453 NC_009901.1 561972 562856 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: shm:Shewmr7_3501 radical SAM domain protein; radical SAM domain-containing protein 561972..562856 Shewanella pealeana ATCC 700345 5660853 YP_001500317.1 CDS Spea_0454 NC_009901.1 562872 563810 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0144 probable transcription regulator protein; LysR family transcriptional regulator complement(562872..563810) Shewanella pealeana ATCC 700345 5660854 YP_001500318.1 CDS Spea_0455 NC_009901.1 563807 564739 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppu:PP_3608 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(563807..564739) Shewanella pealeana ATCC 700345 5660855 YP_001500319.1 CDS Spea_0456 NC_009901.1 565038 566078 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; OmpA domain-containing protein complement(565038..566078) Shewanella pealeana ATCC 700345 5660856 YP_001500320.1 CDS Spea_0457 NC_009901.1 566318 567154 R PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_3394 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(566318..567154) Shewanella pealeana ATCC 700345 5660857 YP_001500321.1 CDS Spea_0458 NC_009901.1 567367 567825 D KEGG: shw:Sputw3181_3632 hypothetical protein; hypothetical protein 567367..567825 Shewanella pealeana ATCC 700345 5660858 YP_001500322.1 CDS Spea_0459 NC_009901.1 567896 568111 R KEGG: sbm:Shew185_0466 protein of unknown function DUF465; hypothetical protein complement(567896..568111) Shewanella pealeana ATCC 700345 5660859 YP_001500323.1 CDS Spea_0460 NC_009901.1 568608 569366 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 568608..569366 Shewanella pealeana ATCC 700345 5660860 YP_001500324.1 CDS Spea_0461 NC_009901.1 569440 570192 R KEGG: slo:Shew_3389 hypothetical protein; hypothetical protein complement(569440..570192) Shewanella pealeana ATCC 700345 5660861 YP_001500325.1 CDS Spea_0462 NC_009901.1 570582 571061 D PFAM: protein of unknown function DUF107; KEGG: shm:Shewmr7_0449 protein of unknown function DUF107; hypothetical protein 570582..571061 Shewanella pealeana ATCC 700345 5660862 YP_001500326.1 CDS Spea_0463 NC_009901.1 571090 572019 D PFAM: band 7 protein; KEGG: slo:Shew_3387 band 7 protein; hypothetical protein 571090..572019 Shewanella pealeana ATCC 700345 5660863 YP_001500327.1 CDS Spea_0464 NC_009901.1 572019 572957 D PFAM: band 7 protein; KEGG: slo:Shew_3386 band 7 protein; hypothetical protein 572019..572957 Shewanella pealeana ATCC 700345 5660864 YP_001500328.1 CDS Spea_0465 NC_009901.1 573068 573481 D PFAM: NUDIX hydrolase; KEGG: shn:Shewana3_0463 NUDIX hydrolase; NUDIX hydrolase 573068..573481 Shewanella pealeana ATCC 700345 5660865 YP_001500329.1 CDS Spea_0466 NC_009901.1 573816 575906 R KEGG: cps:CPS_1933 sensory box/GGDEF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(573816..575906) Shewanella pealeana ATCC 700345 5660866 YP_001500330.1 CDS Spea_0467 NC_009901.1 576330 576683 D PFAM: Endoribonuclease L-PSP; KEGG: cps:CPS_4240 endoribonuclease, L-PSP family; endoribonuclease L-PSP 576330..576683 Shewanella pealeana ATCC 700345 5660867 YP_001500331.1 CDS uvrD NC_009901.1 576841 579006 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 576841..579006 Shewanella pealeana ATCC 700345 5660868 YP_001500332.1 CDS ubiA NC_009901.1 579168 580034 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 579168..580034 Shewanella pealeana ATCC 700345 5660869 YP_001500333.1 CDS Spea_0470 NC_009901.1 580298 580828 D KEGG: slo:Shew_3383 hypothetical protein; hypothetical protein 580298..580828 Shewanella pealeana ATCC 700345 5660870 YP_001500334.1 CDS Spea_0471 NC_009901.1 580895 581914 R PFAM: putative esterase; KEGG: sfr:Sfri_3395 hydrolase of the alpha/beta superfamily; putative esterase complement(580895..581914) Shewanella pealeana ATCC 700345 5660871 YP_001500335.1 CDS Spea_0472 NC_009901.1 582132 583238 D KEGG: sfr:Sfri_3394 hypothetical protein; hypothetical protein 582132..583238 Shewanella pealeana ATCC 700345 5660872 YP_001500336.1 CDS Spea_0473 NC_009901.1 583314 583892 R KEGG: slo:Shew_0343 hypothetical protein; hypothetical protein complement(583314..583892) Shewanella pealeana ATCC 700345 5660873 YP_001500337.1 CDS Spea_0474 NC_009901.1 584044 584259 R hypothetical protein complement(584044..584259) Shewanella pealeana ATCC 700345 5660874 YP_001500338.1 CDS Spea_0475 NC_009901.1 584666 586195 D PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0344 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 584666..586195 Shewanella pealeana ATCC 700345 5660875 YP_001500339.1 CDS Spea_0476 NC_009901.1 586492 587025 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0345 redoxin domain protein; alkyl hydroperoxide reductase complement(586492..587025) Shewanella pealeana ATCC 700345 5660876 YP_001500340.1 CDS Spea_0477 NC_009901.1 587069 587515 R PFAM: cytochrome C biogenesis protein; KEGG: shw:Sputw3181_0575 cytochrome c biogenesis protein; cytochrome C biogenesis protein complement(587069..587515) Shewanella pealeana ATCC 700345 5660877 YP_001500341.1 CDS Spea_0478 NC_009901.1 587512 589494 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO_0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(587512..589494) Shewanella pealeana ATCC 700345 5660878 YP_001500342.1 CDS Spea_0479 NC_009901.1 590051 592087 D KEGG: slo:Shew_0348 cytochrome c, putative; cytochrome c 590051..592087 Shewanella pealeana ATCC 700345 5660879 YP_001500343.1 CDS Spea_0480 NC_009901.1 592148 592576 D SMART: Rhodanese domain protein; KEGG: shw:Sputw3181_0578 rhodanese domain protein; rhodanese domain-containing protein 592148..592576 Shewanella pealeana ATCC 700345 5660880 YP_001500344.1 CDS Spea_0481 NC_009901.1 592614 593417 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 592614..593417 Shewanella pealeana ATCC 700345 5660881 YP_001500345.1 CDS Spea_0482 NC_009901.1 593449 594186 D KEGG: son:SO_0482 formate-dependent nitrite reductase, NrfG protein; hypothetical protein 593449..594186 Shewanella pealeana ATCC 700345 5660882 YP_001500346.1 CDS Spea_0483 NC_009901.1 594264 594971 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 594264..594971 Shewanella pealeana ATCC 700345 5660883 YP_001500347.1 CDS Spea_0484 NC_009901.1 594974 595921 D PFAM: Polysulphide reductase NrfD; KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 594974..595921 Shewanella pealeana ATCC 700345 5660884 YP_001500348.1 CDS Spea_0485 NC_009901.1 596272 596760 D PFAM: NosL family protein; KEGG: shm:Shewmr7_3536 NosL family protein; NosL family protein 596272..596760 Shewanella pealeana ATCC 700345 5660885 YP_001500349.1 CDS Spea_0486 NC_009901.1 596830 598170 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: shw:Sputw3181_0582 periplasmic copper-binding; periplasmic copper-binding protein 596830..598170 Shewanella pealeana ATCC 700345 5660886 YP_001500350.1 CDS Spea_0487 NC_009901.1 598170 599147 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 598170..599147 Shewanella pealeana ATCC 700345 5660887 YP_001500351.1 CDS Spea_0488 NC_009901.1 599149 599994 D KEGG: slo:Shew_0357 copper ABC transporter, permease protein; copper ABC transporter permease 599149..599994 Shewanella pealeana ATCC 700345 5660888 YP_001500352.1 CDS Spea_0489 NC_009901.1 600202 601485 D PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC 600202..601485 Shewanella pealeana ATCC 700345 5660889 YP_001500353.1 CDS Spea_0490 NC_009901.1 602626 603084 R hypothetical protein complement(602626..603084) Shewanella pealeana ATCC 700345 5660890 YP_001500354.1 CDS Spea_0491 NC_009901.1 603137 603382 R KEGG: ppr:PBPRC0048 hypothetical protein; hypothetical protein complement(603137..603382) Shewanella pealeana ATCC 700345 5660891 YP_001500355.1 CDS Spea_0492 NC_009901.1 603830 604135 D KEGG: sdn:Sden_3087 protein of unknown function DUF1568; hypothetical protein 603830..604135 Shewanella pealeana ATCC 700345 5660892 YP_001500356.1 CDS Spea_0493 NC_009901.1 604262 604921 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_3142 transporter, LysE family; lysine exporter protein LysE/YggA complement(604262..604921) Shewanella pealeana ATCC 700345 5660893 YP_001500357.1 CDS Spea_0494 NC_009901.1 605426 605563 D KEGG: sdn:Sden_1610 protein of unknown function DUF1568; hypothetical protein 605426..605563 Shewanella pealeana ATCC 700345 5660894 YP_001500358.1 CDS Spea_0495 NC_009901.1 605743 605913 D KEGG: son:SO_1241 hypothetical protein; hypothetical protein 605743..605913 Shewanella pealeana ATCC 700345 5660895 YP_001500359.1 CDS Spea_0496 NC_009901.1 606457 607014 D KEGG: vfi:VFA0138 hypothetical protein; hypothetical protein 606457..607014 Shewanella pealeana ATCC 700345 5660896 YP_001500360.1 CDS Spea_0497 NC_009901.1 607120 608490 D PFAM: FNIP; KEGG: tva:TVAG_154640 surface antigen BspA-like Pfam: FNIP Pentapeptide_2 PROSITE: SER_RICH; hypothetical protein 607120..608490 Shewanella pealeana ATCC 700345 5660897 YP_001500361.1 CDS Spea_0498 NC_009901.1 608893 611712 D hypothetical protein 608893..611712 Shewanella pealeana ATCC 700345 5660898 YP_001500362.1 CDS Spea_0499 NC_009901.1 612325 613329 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcz:pE33L466_0259 possible drug/metabolite exporter; hypothetical protein 612325..613329 Shewanella pealeana ATCC 700345 5660899 YP_001500363.1 CDS Spea_0500 NC_009901.1 614099 614428 D PFAM: ferredoxin; KEGG: ppr:PBPRB0250 hypothetical protein; ferredoxin 614099..614428 Shewanella pealeana ATCC 700345 5660900 YP_001500364.1 CDS Spea_0501 NC_009901.1 614605 615147 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ 614605..615147 Shewanella pealeana ATCC 700345 5660901 YP_001500365.1 CDS Spea_0502 NC_009901.1 615214 615927 D PFAM: Glutathione S-transferase domain; KEGG: ppr:PBPRB0252 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 615214..615927 Shewanella pealeana ATCC 700345 5660902 YP_001500366.1 CDS Spea_0503 NC_009901.1 616645 618675 D KEGG: slo:Shew_0348 cytochrome c, putative; cytochrome c 616645..618675 Shewanella pealeana ATCC 700345 5660903 YP_001500367.1 CDS Spea_0504 NC_009901.1 618715 619173 D SMART: Rhodanese domain protein; KEGG: slo:Shew_0349 rhodanese domain protein; rhodanese domain-containing protein 618715..619173 Shewanella pealeana ATCC 700345 5660904 YP_001500368.1 CDS Spea_0505 NC_009901.1 619233 620018 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 619233..620018 Shewanella pealeana ATCC 700345 5660905 YP_001500369.1 CDS Spea_0506 NC_009901.1 620104 620817 D KEGG: slo:Shew_0351 tetratricopeptide TPR_2 repeat protein; hypothetical protein 620104..620817 Shewanella pealeana ATCC 700345 5660906 YP_001500370.1 CDS Spea_0507 NC_009901.1 620880 621590 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 620880..621590 Shewanella pealeana ATCC 700345 5660907 YP_001500371.1 CDS Spea_0508 NC_009901.1 621593 622540 D PFAM: Polysulphide reductase NrfD; KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 621593..622540 Shewanella pealeana ATCC 700345 5660908 YP_001500372.1 CDS Spea_0509 NC_009901.1 622713 623201 D PFAM: NosL family protein; KEGG: sbm:Shew185_3871 NosL family protein; NosL family protein 622713..623201 Shewanella pealeana ATCC 700345 5660909 YP_001500373.1 CDS Spea_0510 NC_009901.1 623257 624576 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: shw:Sputw3181_0582 periplasmic copper-binding; periplasmic copper-binding protein 623257..624576 Shewanella pealeana ATCC 700345 5660910 YP_001500374.1 CDS Spea_0511 NC_009901.1 624672 625580 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 624672..625580 Shewanella pealeana ATCC 700345 5660911 YP_001500375.1 CDS Spea_0512 NC_009901.1 625582 626406 D PFAM: ABC-2 type transporter; KEGG: slo:Shew_0357 copper ABC transporter, permease protein; ABC-2 type transporter 625582..626406 Shewanella pealeana ATCC 700345 5660912 YP_001500376.1 CDS Spea_0513 NC_009901.1 626672 627955 D PFAM: transcriptional regulator domain protein; KEGG: shn:Shewana3_0499 transcriptional regulator, CadC; transcriptional regulator CadC 626672..627955 Shewanella pealeana ATCC 700345 5660913 YP_001500377.1 CDS Spea_0514 NC_009901.1 628444 628863 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 628444..628863 Shewanella pealeana ATCC 700345 5660914 YP_001500378.1 CDS Spea_0515 NC_009901.1 628882 630387 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 628882..630387 Shewanella pealeana ATCC 700345 5660915 YP_001500379.1 CDS rbsC NC_009901.1 630384 631358 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 630384..631358 Shewanella pealeana ATCC 700345 5660916 YP_001500380.1 CDS Spea_0517 NC_009901.1 631445 632344 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 631445..632344 Shewanella pealeana ATCC 700345 5660917 YP_001500381.1 CDS Spea_0518 NC_009901.1 632466 633389 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 632466..633389 Shewanella pealeana ATCC 700345 5660918 YP_001500382.1 CDS Spea_0519 NC_009901.1 633517 634521 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vco:VC0395_0006 ribose operon repressor; LacI family transcriptional regulator 633517..634521 Shewanella pealeana ATCC 700345 5660919 YP_001500383.1 CDS fre NC_009901.1 634615 635325 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(634615..635325) Shewanella pealeana ATCC 700345 5660920 YP_001500384.1 CDS Spea_0521 NC_009901.1 635435 636916 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: slo:Shew_0360 UbiD family decarboxylase; UbiD family decarboxylase complement(635435..636916) Shewanella pealeana ATCC 700345 5660921 YP_001500385.1 CDS Spea_0522 NC_009901.1 637137 637706 D KEGG: sfr:Sfri_3388 hypothetical protein; hypothetical protein 637137..637706 Shewanella pealeana ATCC 700345 5660922 YP_001500386.1 CDS Spea_0523 NC_009901.1 637794 638384 D KEGG: saz:Sama_3100 hypothetical protein; hypothetical protein 637794..638384 Shewanella pealeana ATCC 700345 5660923 YP_001500387.1 CDS Spea_0524 NC_009901.1 638457 638981 R PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_3606 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(638457..638981) Shewanella pealeana ATCC 700345 5660924 YP_001500388.1 CDS Spea_0525 NC_009901.1 639013 639576 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cps:CPS_2140 putative lipoprotein; redoxin domain-containing protein complement(639013..639576) Shewanella pealeana ATCC 700345 5660925 YP_001500389.1 CDS Spea_0526 NC_009901.1 640018 641220 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: ppr:PBPRA2465 putative tyrosine-specific transport protein; aromatic amino acid transporter 640018..641220 Shewanella pealeana ATCC 700345 5660926 YP_001500390.1 CDS Spea_0527 NC_009901.1 643519 644862 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 643519..644862 Shewanella pealeana ATCC 700345 5664679 YP_001500391.1 CDS Spea_0528 NC_009901.1 651937 653757 D KEGG: gur:Gura_0621 hypothetical protein; hypothetical protein 651937..653757 Shewanella pealeana ATCC 700345 5664684 YP_001500392.1 CDS Spea_0529 NC_009901.1 653848 655044 R KEGG: spc:Sputcn32_0051 putative plasmid transfer protein; putative plasmid transfer protein complement(653848..655044) Shewanella pealeana ATCC 700345 5660929 YP_001500393.1 CDS Spea_0530 NC_009901.1 655536 656162 D KEGG: sfr:Sfri_3568 hypothetical protein; hypothetical protein 655536..656162 Shewanella pealeana ATCC 700345 5660930 YP_001500394.1 CDS Spea_0531 NC_009901.1 656197 656550 R hypothetical protein complement(656197..656550) Shewanella pealeana ATCC 700345 5660931 YP_001500395.1 CDS Spea_0532 NC_009901.1 656680 657342 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbl:Sbal_0468 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(656680..657342) Shewanella pealeana ATCC 700345 5660932 YP_001500396.1 CDS Spea_0533 NC_009901.1 657397 657849 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vfi:VF2386 biotin carboxyl carrier protein of acetyl-CoA carboxylase; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(657397..657849) Shewanella pealeana ATCC 700345 5660933 YP_001500397.1 CDS Spea_0534 NC_009901.1 657864 658310 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(657864..658310) Shewanella pealeana ATCC 700345 5660934 YP_001500398.1 CDS Spea_0535 NC_009901.1 658483 658905 R PFAM: Class I peptide chain release factor; KEGG: sbm:Shew185_3853 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein complement(658483..658905) Shewanella pealeana ATCC 700345 5660935 YP_001500399.1 CDS Spea_0536 NC_009901.1 659098 659469 D KEGG: sdn:Sden_3283 hypothetical protein; hypothetical protein 659098..659469 Shewanella pealeana ATCC 700345 5660936 YP_001500400.1 CDS Spea_0537 NC_009901.1 659541 659717 D KEGG: sbl:Sbal_0473 hypothetical protein; hypothetical protein 659541..659717 Shewanella pealeana ATCC 700345 5660937 YP_001500401.1 CDS Spea_0538 NC_009901.1 659872 660309 D KEGG: slo:Shew_3359 hypothetical protein; hypothetical protein 659872..660309 Shewanella pealeana ATCC 700345 5660938 YP_001500402.1 CDS Spea_0539 NC_009901.1 660602 661948 D KEGG: slo:Shew_3358 outer membrane efflux family protein, putative; outer membrane efflux family protein 660602..661948 Shewanella pealeana ATCC 700345 5660939 YP_001500403.1 CDS Spea_0540 NC_009901.1 661959 663338 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_3357 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 661959..663338 Shewanella pealeana ATCC 700345 5660940 YP_001500404.1 CDS Spea_0541 NC_009901.1 663351 666575 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_3356 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 663351..666575 Shewanella pealeana ATCC 700345 5660941 YP_001500405.1 CDS Spea_0542 NC_009901.1 666874 667179 R KEGG: spc:Sputcn32_0183 hypothetical protein; hypothetical protein complement(666874..667179) Shewanella pealeana ATCC 700345 5660942 YP_001500406.1 CDS mepA NC_009901.1 667460 668344 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 667460..668344 Shewanella pealeana ATCC 700345 5660943 YP_001500407.1 CDS Spea_0544 NC_009901.1 668459 670744 R PFAM: aminotransferase class V; beta-lactamase domain protein; Rhodanese domain protein; KEGG: slo:Shew_3354 aminotransferase, class V; class V aminotransferase complement(668459..670744) Shewanella pealeana ATCC 700345 5660944 YP_001500408.1 CDS Spea_0545 NC_009901.1 671034 671570 R PFAM: protein of unknown function DUF442; KEGG: sfr:Sfri_3576 hypothetical protein; hypothetical protein complement(671034..671570) Shewanella pealeana ATCC 700345 5660945 YP_001500409.1 CDS Spea_0546 NC_009901.1 671678 672139 R PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_3560 conserved hypothetical protein 22; hypothetical protein complement(671678..672139) Shewanella pealeana ATCC 700345 5660946 YP_001500410.1 CDS Spea_0547 NC_009901.1 672400 673461 D KEGG: slo:Shew_3350 hypothetical protein; hypothetical protein 672400..673461 Shewanella pealeana ATCC 700345 5660947 YP_001500411.1 CDS Spea_0548 NC_009901.1 673614 674207 D KEGG: slo:Shew_3349 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 673614..674207 Shewanella pealeana ATCC 700345 5660948 YP_001500412.1 CDS Spea_0549 NC_009901.1 674518 675456 D PFAM: pseudouridine synthase; KEGG: sbm:Shew185_0433 pseudouridine synthase; pseudouridine synthase 674518..675456 Shewanella pealeana ATCC 700345 5660949 YP_001500413.1 CDS Spea_0550 NC_009901.1 675719 677605 R KEGG: shn:Shewana3_3710 hypothetical protein; hypothetical protein complement(675719..677605) Shewanella pealeana ATCC 700345 5660950 YP_001500414.1 CDS Spea_0551 NC_009901.1 677716 678639 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shn:Shewana3_3709 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 677716..678639 Shewanella pealeana ATCC 700345 5660951 YP_001500415.1 CDS Spea_0552 NC_009901.1 678668 679990 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3343 integral membrane sensor signal transduction histidine kinase; histidine kinase 678668..679990 Shewanella pealeana ATCC 700345 5660952 YP_001500416.1 CDS Spea_0553 NC_009901.1 679983 680522 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: sfr:Sfri_1844 response regulator receiver protein; two component Fis family transcriptional regulator 679983..680522 Shewanella pealeana ATCC 700345 5660953 YP_001500417.1 CDS Spea_0554 NC_009901.1 680705 681853 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_0508 xanthine/uracil/vitamin C permease; sulfate transporter complement(680705..681853) Shewanella pealeana ATCC 700345 5660954 YP_001500418.1 CDS Spea_0555 NC_009901.1 682132 682851 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: son:SO_4141 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(682132..682851) Shewanella pealeana ATCC 700345 5660955 YP_001500419.1 CDS Spea_0556 NC_009901.1 682998 683912 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_4936 substrate-binding transcriptional regulator, LysR family; LysR family transcriptional regulator 682998..683912 Shewanella pealeana ATCC 700345 5660956 YP_001500420.1 CDS Spea_0557 NC_009901.1 684117 685310 D KEGG: slo:Shew_0517 putative plasmid transfer protein; putative plasmid transfer protein 684117..685310 Shewanella pealeana ATCC 700345 5660957 YP_001500421.1 CDS Spea_0558 NC_009901.1 685317 686048 R PFAM: protein of unknown function DUF81; KEGG: shw:Sputw3181_3556 protein of unknown function DUF81; hypothetical protein complement(685317..686048) Shewanella pealeana ATCC 700345 5660958 YP_001500422.1 CDS Spea_0559 NC_009901.1 686241 686555 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(686241..686555) Shewanella pealeana ATCC 700345 5660959 YP_001500423.1 CDS Spea_0560 NC_009901.1 686767 687927 D KEGG: she:Shewmr4_3439 O-succinylhomoserine (thiol)-lyase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase 686767..687927 Shewanella pealeana ATCC 700345 5660960 YP_001500424.1 CDS metL NC_009901.1 687943 690336 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 687943..690336 Shewanella pealeana ATCC 700345 5660961 YP_001500425.1 CDS metF NC_009901.1 690542 691432 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 690542..691432 Shewanella pealeana ATCC 700345 5660962 YP_001500426.1 CDS Spea_0563 NC_009901.1 691591 691971 D KEGG: slo:Shew_0526 hypothetical protein; hypothetical protein 691591..691971 Shewanella pealeana ATCC 700345 5660963 YP_001500427.1 CDS Spea_0564 NC_009901.1 692027 692311 D KEGG: shn:Shewana3_3604 hypothetical protein; hypothetical protein 692027..692311 Shewanella pealeana ATCC 700345 5660964 YP_001500428.1 CDS Spea_0565 NC_009901.1 692368 693345 D PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: she:Shewmr4_3427 protein of unknown function DUF6, transmembrane; hypothetical protein 692368..693345 Shewanella pealeana ATCC 700345 5660965 YP_001500429.1 CDS Spea_0566 NC_009901.1 693864 695735 R PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_0531 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(693864..695735) Shewanella pealeana ATCC 700345 5660966 YP_001500430.1 CDS Spea_0567 NC_009901.1 695953 696921 R PFAM: peptidase M20; peptidase M28; KEGG: slo:Shew_0532 peptidase M28; peptidase M28 complement(695953..696921) Shewanella pealeana ATCC 700345 5660967 YP_001500431.1 CDS Spea_0568 NC_009901.1 696984 697319 R KEGG: shm:Shewmr7_0530 hypothetical protein; hypothetical protein complement(696984..697319) Shewanella pealeana ATCC 700345 5660968 YP_001500432.1 CDS Spea_0569 NC_009901.1 697337 700180 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: shw:Sputw3181_3536 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(697337..700180) Shewanella pealeana ATCC 700345 5660969 YP_001500433.1 CDS Spea_0570 NC_009901.1 700446 701813 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0534 major facilitator superfamily MFS_1; major facilitator transporter 700446..701813 Shewanella pealeana ATCC 700345 5660970 YP_001500434.1 CDS Spea_0571 NC_009901.1 701847 702515 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: shw:Sputw3181_3534 single-strand binding protein; ssDNA-binding protein 701847..702515 Shewanella pealeana ATCC 700345 5660971 YP_001500435.1 CDS Spea_0572 NC_009901.1 702567 703295 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit complement(702567..703295) Shewanella pealeana ATCC 700345 5660972 YP_001500436.1 CDS Spea_0573 NC_009901.1 703412 703795 R KEGG: sfr:Sfri_3563 transposase; transposase complement(703412..703795) Shewanella pealeana ATCC 700345 5660973 YP_001500437.1 CDS Spea_0574 NC_009901.1 703914 704645 R KEGG: sdn:Sden_0410 putative cation efflux protein; putative cation efflux protein complement(703914..704645) Shewanella pealeana ATCC 700345 5660974 YP_001500438.1 CDS Spea_0575 NC_009901.1 705180 705593 D KEGG: slo:Shew_3273 hypothetical protein; hypothetical protein 705180..705593 Shewanella pealeana ATCC 700345 5660975 YP_001500439.1 CDS Spea_0576 NC_009901.1 705652 706683 R PFAM: Aldose 1-epimerase; KEGG: sdn:Sden_0413 aldose 1-epimerase; aldose 1-epimerase complement(705652..706683) Shewanella pealeana ATCC 700345 5660976 YP_001500440.1 CDS Spea_0577 NC_009901.1 706720 707874 R TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: slo:Shew_3271 galactokinase; galactokinase complement(706720..707874) Shewanella pealeana ATCC 700345 5660977 YP_001500441.1 CDS Spea_0578 NC_009901.1 708196 709617 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: slo:Shew_3270 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter complement(708196..709617) Shewanella pealeana ATCC 700345 5660978 YP_001500442.1 CDS Spea_0579 NC_009901.1 709762 709905 R KEGG: slo:Shew_3269 beta-galactosidase; beta-galactosidase complement(709762..709905) Shewanella pealeana ATCC 700345 5660979 YP_001500443.1 CDS Spea_0580 NC_009901.1 709947 713180 R PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: slo:Shew_3269 beta-galactosidase; glycoside hydrolase family protein complement(709947..713180) Shewanella pealeana ATCC 700345 5660980 YP_001500444.1 CDS Spea_0581 NC_009901.1 713207 714136 R PFAM: WD40 domain protein beta Propeller; KEGG: slo:Shew_3268 hypothetical protein; WD40 domain-containing protein complement(713207..714136) Shewanella pealeana ATCC 700345 5660981 YP_001500445.1 CDS Spea_0582 NC_009901.1 714205 715863 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: slo:Shew_3267 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(714205..715863) Shewanella pealeana ATCC 700345 5660982 YP_001500446.1 CDS dipZ NC_009901.1 716101 717933 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(716101..717933) Shewanella pealeana ATCC 700345 5660983 YP_001500447.1 CDS Spea_0584 NC_009901.1 717930 718253 R PFAM: CutA1 divalent ion tolerance protein; KEGG: sbl:Sbal_3725 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein complement(717930..718253) Shewanella pealeana ATCC 700345 5660984 YP_001500448.1 CDS Spea_0585 NC_009901.1 718573 719160 D PFAM: FxsA cytoplasmic membrane protein; KEGG: slo:Shew_3264 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 718573..719160 Shewanella pealeana ATCC 700345 5660985 YP_001500449.1 CDS Spea_0586 NC_009901.1 719157 720986 R SMART: serine/threonine protein kinase; KEGG: slo:Shew_3263 serine/threonine protein kinase; serine/threonine protein kinase complement(719157..720986) Shewanella pealeana ATCC 700345 5660986 YP_001500450.1 CDS Spea_0587 NC_009901.1 721203 721544 D KEGG: slo:Shew_3262 hypothetical protein; hypothetical protein 721203..721544 Shewanella pealeana ATCC 700345 5660987 YP_001500451.1 CDS Spea_0588 NC_009901.1 721765 722424 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 721765..722424 Shewanella pealeana ATCC 700345 5660988 YP_001500452.1 CDS Spea_0589 NC_009901.1 722699 723733 R PFAM: porin Gram-negative type; KEGG: sfr:Sfri_0503 porin, gram-negative type; porin complement(722699..723733) Shewanella pealeana ATCC 700345 5660989 YP_001500453.1 CDS Spea_0590 NC_009901.1 724469 725533 R PFAM: porin Gram-negative type; KEGG: slo:Shew_3252 porin, gram-negative type; porin complement(724469..725533) Shewanella pealeana ATCC 700345 5660990 YP_001500454.1 CDS Spea_0591 NC_009901.1 725925 726725 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: slo:Shew_3251 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 725925..726725 Shewanella pealeana ATCC 700345 5660991 YP_001500455.1 CDS Spea_0592 NC_009901.1 726936 727553 D KEGG: slo:Shew_3248 hypothetical protein; hypothetical protein 726936..727553 Shewanella pealeana ATCC 700345 5660992 YP_001500456.1 CDS Spea_0593 NC_009901.1 727650 727784 R KEGG: saz:Sama_0549 hypothetical protein; hypothetical protein complement(727650..727784) Shewanella pealeana ATCC 700345 5660993 YP_001500457.1 CDS Spea_0594 NC_009901.1 728937 730808 D PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO_A0048 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 728937..730808 Shewanella pealeana ATCC 700345 5664685 YP_001500458.1 CDS Spea_0595 NC_009901.1 730899 732023 R PFAM: peptidase M50; KEGG: slo:Shew_3232 peptidase M50; peptidase M50 complement(730899..732023) Shewanella pealeana ATCC 700345 5660995 YP_001500459.1 CDS Spea_0596 NC_009901.1 732137 733801 R PFAM: protein of unknown function DUF342; KEGG: slo:Shew_3231 protein of unknown function DUF342; hypothetical protein complement(732137..733801) Shewanella pealeana ATCC 700345 5660996 YP_001500460.1 CDS Spea_0597 NC_009901.1 734320 735345 R PFAM: methyltransferase small; Methyltransferase type 12; Methyltransferase small domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase complement(734320..735345) Shewanella pealeana ATCC 700345 5660997 YP_001500461.1 CDS Spea_0598 NC_009901.1 735612 736949 R PFAM: Alkaline phosphatase; KEGG: slo:Shew_3226 alkaline phosphatase; alkaline phosphatase complement(735612..736949) Shewanella pealeana ATCC 700345 5660998 YP_001500462.1 CDS Spea_0599 NC_009901.1 736964 737917 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(736964..737917) Shewanella pealeana ATCC 700345 5660999 YP_001500463.1 CDS Spea_0600 NC_009901.1 738034 738765 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(738034..738765) Shewanella pealeana ATCC 700345 5661000 YP_001500464.1 CDS Spea_0601 NC_009901.1 739231 739983 D PFAM: Endonuclease I; KEGG: ppr:PBPRC0029 putative endonuclease I; deoxyribonuclease I 739231..739983 Shewanella pealeana ATCC 700345 5661001 YP_001500465.1 CDS Spea_0602 NC_009901.1 740018 740584 R PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: slo:Shew_3222 protein of unknown function DUF335, SprT; hypothetical protein complement(740018..740584) Shewanella pealeana ATCC 700345 5661002 YP_001500466.1 CDS Spea_0603 NC_009901.1 740862 742022 R KEGG: slo:Shew_3221 hypothetical protein; hypothetical protein complement(740862..742022) Shewanella pealeana ATCC 700345 5661003 YP_001500467.1 CDS Spea_0604 NC_009901.1 742513 743424 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_3219 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(742513..743424) Shewanella pealeana ATCC 700345 5661004 YP_001500468.1 CDS Spea_0605 NC_009901.1 743547 748100 D PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 743547..748100 Shewanella pealeana ATCC 700345 5661005 YP_001500469.1 CDS Spea_0606 NC_009901.1 748187 749431 R PFAM: sodium/hydrogen exchanger; KEGG: noc:Noc_0960 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(748187..749431) Shewanella pealeana ATCC 700345 5661006 YP_001500470.1 CDS Spea_0607 NC_009901.1 749576 750388 R KEGG: spc:Sputcn32_3895 hypothetical protein; hypothetical protein complement(749576..750388) Shewanella pealeana ATCC 700345 5661007 YP_001500471.1 CDS Spea_0608 NC_009901.1 750412 751557 R KEGG: spc:Sputcn32_3894 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase complement(750412..751557) Shewanella pealeana ATCC 700345 5661008 YP_001500472.1 CDS Spea_0609 NC_009901.1 752424 753128 D PFAM: Sporulation domain protein; KEGG: pha:PSHAa0751 hypothetical protein; sporulation domain-containing protein 752424..753128 Shewanella pealeana ATCC 700345 5661009 YP_001500473.1 CDS Spea_0610 NC_009901.1 753282 753911 D hypothetical protein 753282..753911 Shewanella pealeana ATCC 700345 5661010 YP_001500474.1 CDS Spea_0611 NC_009901.1 753974 754423 D hypothetical protein 753974..754423 Shewanella pealeana ATCC 700345 5661011 YP_001500475.1 CDS Spea_0612 NC_009901.1 754521 755360 D KEGG: pol:Bpro_5311 hypothetical protein; hypothetical protein 754521..755360 Shewanella pealeana ATCC 700345 5661012 YP_001500476.1 CDS Spea_0613 NC_009901.1 755440 758571 D KEGG: pol:Bpro_5310 hypothetical protein; hypothetical protein 755440..758571 Shewanella pealeana ATCC 700345 5661013 YP_001500477.1 CDS Spea_0614 NC_009901.1 758640 759488 D PFAM: Sporulation domain protein; KEGG: pha:PSHAa0753 hypothetical protein; sporulation domain-containing protein 758640..759488 Shewanella pealeana ATCC 700345 5661014 YP_001500478.1 CDS Spea_0615 NC_009901.1 759612 759941 R KEGG: sdn:Sden_0845 hypothetical protein; hypothetical protein complement(759612..759941) Shewanella pealeana ATCC 700345 5661015 YP_001500479.1 CDS Spea_0616 NC_009901.1 760002 761036 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psa:PST_2459 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(760002..761036) Shewanella pealeana ATCC 700345 5661016 YP_001500480.1 CDS Spea_0617 NC_009901.1 761205 762566 D KEGG: sma:SAV5462 hypothetical protein; hypothetical protein 761205..762566 Shewanella pealeana ATCC 700345 5661017 YP_001500481.1 CDS Spea_0618 NC_009901.1 762721 763605 D KEGG: sfr:Sfri_2734 hypothetical protein; hypothetical protein 762721..763605 Shewanella pealeana ATCC 700345 5661018 YP_001500482.1 CDS Spea_0619 NC_009901.1 763617 763856 R hypothetical protein complement(763617..763856) Shewanella pealeana ATCC 700345 5661019 YP_001500483.1 CDS Spea_0620 NC_009901.1 763871 764296 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: slo:Shew_3209 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit NapB complement(763871..764296) Shewanella pealeana ATCC 700345 5661020 YP_001500484.1 CDS napH NC_009901.1 764293 765189 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(764293..765189) Shewanella pealeana ATCC 700345 5661021 YP_001500485.1 CDS napG NC_009901.1 765186 765920 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(765186..765920) Shewanella pealeana ATCC 700345 5661022 YP_001500486.1 CDS Spea_0623 NC_009901.1 765981 768461 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(765981..768461) Shewanella pealeana ATCC 700345 5661023 YP_001500487.1 CDS Spea_0624 NC_009901.1 768451 768726 R PFAM: NapD family protein; KEGG: slo:Shew_3205 NapD family protein; NapD family protein complement(768451..768726) Shewanella pealeana ATCC 700345 5661024 YP_001500488.1 CDS Spea_0625 NC_009901.1 769086 770192 R KEGG: slo:Shew_3203 hypothetical protein; hypothetical protein complement(769086..770192) Shewanella pealeana ATCC 700345 5661025 YP_001500489.1 CDS Spea_0626 NC_009901.1 770189 772726 R PFAM: protein of unknown function DUF214; KEGG: sbm:Shew185_0832 protein of unknown function DUF214; hypothetical protein complement(770189..772726) Shewanella pealeana ATCC 700345 5661026 YP_001500490.1 CDS Spea_0627 NC_009901.1 772719 773387 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO_0857 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(772719..773387) Shewanella pealeana ATCC 700345 5661027 YP_001500491.1 CDS Spea_0628 NC_009901.1 773739 779036 D KEGG: slo:Shew_3200 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 773739..779036 Shewanella pealeana ATCC 700345 5661028 YP_001500492.1 CDS Spea_0629 NC_009901.1 779176 780195 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: slo:Shew_3199 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 779176..780195 Shewanella pealeana ATCC 700345 5661029 YP_001500493.1 CDS Spea_0630 NC_009901.1 780304 781275 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: slo:Shew_3198 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(780304..781275) Shewanella pealeana ATCC 700345 5661030 YP_001500494.1 CDS Spea_0631 NC_009901.1 781736 782965 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(781736..782965) Shewanella pealeana ATCC 700345 5661031 YP_001500495.1 CDS Spea_0632 NC_009901.1 783222 783836 D KEGG: slo:Shew_3195 hypothetical protein; hypothetical protein 783222..783836 Shewanella pealeana ATCC 700345 5661032 YP_001500496.1 CDS Spea_0633 NC_009901.1 784084 784758 D PFAM: regulatory protein LuxR; KEGG: saz:Sama_2948 response regulator receiver protein; LuxR family transcriptional regulator 784084..784758 Shewanella pealeana ATCC 700345 5661033 YP_001500497.1 CDS Spea_0634 NC_009901.1 785435 786661 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: vfi:VFA0967 nucleoside permease NupC; Na+ dependent nucleoside transporter 785435..786661 Shewanella pealeana ATCC 700345 5661034 YP_001500498.1 CDS Spea_0635 NC_009901.1 786755 787465 D TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: aha:AHA_3687 purine nucleoside phosphorylase; purine nucleoside phosphorylase 786755..787465 Shewanella pealeana ATCC 700345 5661035 YP_001500499.1 CDS Spea_0636 NC_009901.1 787836 788273 D PFAM: thioesterase superfamily protein; KEGG: slo:Shew_3192 uncharacterized domain 1 protein; thioesterase superfamily protein 787836..788273 Shewanella pealeana ATCC 700345 5661036 YP_001500500.1 CDS Spea_0637 NC_009901.1 788554 788808 D KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein 788554..788808 Shewanella pealeana ATCC 700345 5661037 YP_001500501.1 CDS Spea_0638 NC_009901.1 789273 790736 D PFAM: Catalase domain protein; KEGG: slo:Shew_3190 catalase; catalase 789273..790736 Shewanella pealeana ATCC 700345 5661038 YP_001500502.1 CDS Spea_0640 NC_009901.1 791003 791557 R PFAM: protein of unknown function UPF0016; KEGG: son:SO_1071 hypothetical protein; hypothetical protein complement(791003..791557) Shewanella pealeana ATCC 700345 5664686 YP_001500503.1 CDS Spea_0641 NC_009901.1 792238 793437 D PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: slo:Shew_3188 aromatic amino acid permease; aromatic amino acid permease 792238..793437 Shewanella pealeana ATCC 700345 5661040 YP_001500504.1 CDS Spea_0642 NC_009901.1 793716 795872 D KEGG: slo:Shew_3187 hypothetical protein; hypothetical protein 793716..795872 Shewanella pealeana ATCC 700345 5661041 YP_001500505.1 CDS Spea_0643 NC_009901.1 796579 797094 D hypothetical protein 796579..797094 Shewanella pealeana ATCC 700345 5661042 YP_001500506.1 CDS Spea_0644 NC_009901.1 797245 797997 D hypothetical protein 797245..797997 Shewanella pealeana ATCC 700345 5661043 YP_001500507.1 CDS Spea_0645 NC_009901.1 798736 799662 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: slo:Shew_0658 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(798736..799662) Shewanella pealeana ATCC 700345 5661044 YP_001500508.1 CDS Spea_0646 NC_009901.1 799745 801193 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 799745..801193 Shewanella pealeana ATCC 700345 5661045 YP_001500509.1 CDS Spea_0647 NC_009901.1 801234 802154 D KEGG: shm:Shewmr7_0887 hypothetical protein; hypothetical protein 801234..802154 Shewanella pealeana ATCC 700345 5661046 YP_001500510.1 CDS Spea_0648 NC_009901.1 802320 802793 D PFAM: regulatory protein TetR; KEGG: saz:Sama_0733 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 802320..802793 Shewanella pealeana ATCC 700345 5661047 YP_001500511.1 CDS Spea_0649 NC_009901.1 803015 804415 R PFAM: MltA-interacting MipA family protein; KEGG: vfi:VF1562 hypothetical protein; MltA-interacting MipA family protein complement(803015..804415) Shewanella pealeana ATCC 700345 5661048 YP_001500512.1 CDS Spea_0650 NC_009901.1 804859 806241 R PFAM: NAD(P) transhydrogenase beta subunit; KEGG: slo:Shew_0662 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase complement(804859..806241) Shewanella pealeana ATCC 700345 5661049 YP_001500513.1 CDS Spea_0651 NC_009901.1 806248 806523 R KEGG: slo:Shew_0663 oxidoreductase; oxidoreductase complement(806248..806523) Shewanella pealeana ATCC 700345 5661050 YP_001500514.1 CDS Spea_0652 NC_009901.1 806523 807752 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: slo:Shew_0664 alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha complement(806523..807752) Shewanella pealeana ATCC 700345 5661051 YP_001500515.1 CDS Spea_0653 NC_009901.1 808052 809848 D TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: sfr:Sfri_3193 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein subunit alpha 808052..809848 Shewanella pealeana ATCC 700345 5661052 YP_001500516.1 CDS Spea_0654 NC_009901.1 809939 811636 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 809939..811636 Shewanella pealeana ATCC 700345 5661053 YP_001500517.1 CDS Spea_0655 NC_009901.1 811629 812384 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 811629..812384 Shewanella pealeana ATCC 700345 5661054 YP_001500518.1 CDS Spea_0656 NC_009901.1 813065 814789 D KEGG: slo:Shew_0668 hypothetical protein; hypothetical protein 813065..814789 Shewanella pealeana ATCC 700345 5661055 YP_001500519.1 CDS Spea_0657 NC_009901.1 814903 815328 D KEGG: pfl:PFL_5750 hypothetical protein; hypothetical protein 814903..815328 Shewanella pealeana ATCC 700345 5661056 YP_001500520.1 CDS Spea_0658 NC_009901.1 815563 816114 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_0669 redoxin domain protein; alkyl hydroperoxide reductase 815563..816114 Shewanella pealeana ATCC 700345 5661057 YP_001500521.1 CDS Spea_0659 NC_009901.1 817195 818055 R PFAM: protein of unknown function RIO1; KEGG: shm:Shewmr7_3358 protein of unknown function RIO1; hypothetical protein complement(817195..818055) Shewanella pealeana ATCC 700345 5661058 YP_001500522.1 CDS Spea_0660 NC_009901.1 818174 819670 R KEGG: shw:Sputw3181_0899 peptidase S41; hypothetical protein complement(818174..819670) Shewanella pealeana ATCC 700345 5661059 YP_001500523.1 CDS Spea_0661 NC_009901.1 819752 820717 R PFAM: phospholipase A1; KEGG: saz:Sama_2893 phospholipase A(1); phospholipase A(1) complement(819752..820717) Shewanella pealeana ATCC 700345 5661060 YP_001500524.1 CDS Spea_0662 NC_009901.1 821127 821942 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sbm:Shew185_0927 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 821127..821942 Shewanella pealeana ATCC 700345 5661061 YP_001500525.1 CDS Spea_0663 NC_009901.1 821969 822877 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 821969..822877 Shewanella pealeana ATCC 700345 5661062 YP_001500526.1 CDS cysN NC_009901.1 822927 824366 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 822927..824366 Shewanella pealeana ATCC 700345 5661063 YP_001500527.1 CDS Spea_0665 NC_009901.1 824369 826093 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_3070 TrkA-C domain protein; TrkA domain-containing protein 824369..826093 Shewanella pealeana ATCC 700345 5661064 YP_001500528.1 CDS Spea_0666 NC_009901.1 826183 826800 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 826183..826800 Shewanella pealeana ATCC 700345 5661065 YP_001500529.1 CDS Spea_0667 NC_009901.1 826858 827301 D PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_2239 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 826858..827301 Shewanella pealeana ATCC 700345 5661066 YP_001500530.1 CDS Spea_0668 NC_009901.1 827407 828267 R KEGG: sbl:Sbal_3402 hypothetical protein; hypothetical protein complement(827407..828267) Shewanella pealeana ATCC 700345 5661067 YP_001500531.1 CDS Spea_0669 NC_009901.1 828340 829530 R PFAM: major facilitator superfamily MFS_1; KEGG: sbm:Shew185_0935 major facilitator superfamily MFS_1; major facilitator transporter complement(828340..829530) Shewanella pealeana ATCC 700345 5661068 YP_001500532.1 CDS Spea_0670 NC_009901.1 829855 831264 D KEGG: sbm:Shew185_0936 hypothetical protein; hypothetical protein 829855..831264 Shewanella pealeana ATCC 700345 5661069 YP_001500533.1 CDS Spea_0671 NC_009901.1 831293 832444 D KEGG: slo:Shew_0676 putative lipoprotein; putative lipoprotein 831293..832444 Shewanella pealeana ATCC 700345 5661070 YP_001500534.1 CDS Spea_0672 NC_009901.1 832557 834212 D PFAM: protein of unknown function DUF1111; KEGG: sfr:Sfri_0812 protein of unknown function DUF1111; hypothetical protein 832557..834212 Shewanella pealeana ATCC 700345 5661071 YP_001500535.1 CDS Spea_0673 NC_009901.1 834432 834965 D KEGG: slo:Shew_0678 protoporphyrinogen oxidase; protoporphyrinogen oxidase 834432..834965 Shewanella pealeana ATCC 700345 5661072 YP_001500536.1 CDS Spea_0674 NC_009901.1 834980 835510 D KEGG: slo:Shew_0679 hypothetical protein; hypothetical protein 834980..835510 Shewanella pealeana ATCC 700345 5661073 YP_001500537.1 CDS Spea_0675 NC_009901.1 835795 836511 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_3180 pseudouridine synthase; pseudouridine synthase complement(835795..836511) Shewanella pealeana ATCC 700345 5661074 YP_001500538.1 CDS Spea_0676 NC_009901.1 836524 837237 R KEGG: slo:Shew_3179 hypothetical protein; hypothetical protein complement(836524..837237) Shewanella pealeana ATCC 700345 5661075 YP_001500539.1 CDS Spea_0677 NC_009901.1 837389 838807 R PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_3178 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(837389..838807) Shewanella pealeana ATCC 700345 5661076 YP_001500540.1 CDS Spea_0678 NC_009901.1 839151 839675 D KEGG: ppr:PBPRB1186 hypothetical protein; hypothetical protein 839151..839675 Shewanella pealeana ATCC 700345 5661077 YP_001500541.1 CDS Spea_0679 NC_009901.1 839735 841789 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: sfr:Sfri_1337 diguanylate cyclase; TPR repeat-containing diguanylate cyclase and serine/threonine protein kinase 839735..841789 Shewanella pealeana ATCC 700345 5661078 YP_001500542.1 CDS Spea_0680 NC_009901.1 842022 843188 D PFAM: porin Gram-negative type; KEGG: slo:Shew_2481 porin, gram-negative type; porin 842022..843188 Shewanella pealeana ATCC 700345 5661079 YP_001500543.1 CDS Spea_0681 NC_009901.1 843229 843957 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit complement(843229..843957) Shewanella pealeana ATCC 700345 5661080 YP_001500544.1 CDS Spea_0682 NC_009901.1 844074 844457 R KEGG: sfr:Sfri_3563 transposase; transposase complement(844074..844457) Shewanella pealeana ATCC 700345 5661081 YP_001500545.1 CDS Spea_0683 NC_009901.1 844599 845309 R PFAM: protein of unknown function DUF541; KEGG: shn:Shewana3_3626 protein of unknown function DUF541; hypothetical protein complement(844599..845309) Shewanella pealeana ATCC 700345 5661082 YP_001500546.1 CDS Spea_0684 NC_009901.1 845453 846097 R KEGG: ter:Tery_4461 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase complement(845453..846097) Shewanella pealeana ATCC 700345 5661083 YP_001500547.1 CDS Spea_0685 NC_009901.1 846196 847512 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(846196..847512) Shewanella pealeana ATCC 700345 5661084 YP_001500548.1 CDS Spea_0686 NC_009901.1 847864 849249 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: slo:Shew_3144 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 847864..849249 Shewanella pealeana ATCC 700345 5661085 YP_001500549.1 CDS Spea_0687 NC_009901.1 849256 849909 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shn:Shewana3_0792 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 849256..849909 Shewanella pealeana ATCC 700345 5661086 YP_001500550.1 CDS Spea_0688 NC_009901.1 849917 850450 D KEGG: slo:Shew_3142 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 849917..850450 Shewanella pealeana ATCC 700345 5661087 YP_001500551.1 CDS Spea_0689 NC_009901.1 850577 851521 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3141 ABC transporter-related protein; ABC transporter-like protein 850577..851521 Shewanella pealeana ATCC 700345 5661088 YP_001500552.1 CDS Spea_0690 NC_009901.1 851518 852294 D PFAM: ABC-2 type transporter; KEGG: slo:Shew_3140 ABC-2 type transporter; ABC-2 type transporter 851518..852294 Shewanella pealeana ATCC 700345 5661089 YP_001500553.1 CDS Spea_0691 NC_009901.1 852366 852701 R KEGG: slo:Shew_3139 hypothetical protein; hypothetical protein complement(852366..852701) Shewanella pealeana ATCC 700345 5661090 YP_001500554.1 CDS Spea_0692 NC_009901.1 852786 853292 R KEGG: shm:Shewmr7_3298 hypothetical protein; hypothetical protein complement(852786..853292) Shewanella pealeana ATCC 700345 5661091 YP_001500555.1 CDS panC NC_009901.1 853642 854493 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(853642..854493) Shewanella pealeana ATCC 700345 5661092 YP_001500556.1 CDS panB NC_009901.1 854565 855359 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(854565..855359) Shewanella pealeana ATCC 700345 5661093 YP_001500557.1 CDS Spea_0695 NC_009901.1 855493 855987 R KEGG: shm:Shewmr7_3295 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(855493..855987) Shewanella pealeana ATCC 700345 5661094 YP_001500558.1 CDS Spea_0696 NC_009901.1 855987 857291 R KEGG: slo:Shew_3131 poly(A) polymerase; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase complement(855987..857291) Shewanella pealeana ATCC 700345 5661095 YP_001500559.1 CDS Spea_0697 NC_009901.1 857471 858349 R PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sbm:Shew185_0848 glutamate--tRNA ligase; glutamyl-tRNA synthetase complement(857471..858349) Shewanella pealeana ATCC 700345 5661096 YP_001500560.1 CDS Spea_0698 NC_009901.1 858408 858851 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: sbm:Shew185_0849 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator complement(858408..858851) Shewanella pealeana ATCC 700345 5661097 YP_001500561.1 CDS Spea_0699 NC_009901.1 859010 859714 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(859010..859714) Shewanella pealeana ATCC 700345 5661098 YP_001500562.1 CDS Spea_0700 NC_009901.1 860251 861528 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 860251..861528 Shewanella pealeana ATCC 700345 5661099 YP_001500563.1 CDS Spea_0701 NC_009901.1 861751 862677 D PFAM: transcriptional regulator domain protein; KEGG: shn:Shewana3_0468 putative transcriptional regulator, CadC; transcriptional regulator CadC 861751..862677 Shewanella pealeana ATCC 700345 5661100 YP_001500564.1 CDS Spea_0702 NC_009901.1 862938 863249 R KEGG: pin:Ping_1759 hypothetical protein; hypothetical protein complement(862938..863249) Shewanella pealeana ATCC 700345 5661101 YP_001500565.1 CDS Spea_0703 NC_009901.1 863577 864098 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pin:Ping_1760 2'-5' RNA ligase; 2'-5' RNA ligase complement(863577..864098) Shewanella pealeana ATCC 700345 5661102 YP_001500566.1 CDS Spea_0704 NC_009901.1 864225 866834 D KEGG: sbl:Sbal_0582 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 864225..866834 Shewanella pealeana ATCC 700345 5661103 YP_001500567.1 CDS Spea_0705 NC_009901.1 866859 869231 D KEGG: slo:Shew_3123 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 866859..869231 Shewanella pealeana ATCC 700345 5661104 YP_001500568.1 CDS Spea_0706 NC_009901.1 869221 869709 D KEGG: sdn:Sden_0673 hypothetical protein; hypothetical protein 869221..869709 Shewanella pealeana ATCC 700345 5661105 YP_001500569.1 CDS Spea_0707 NC_009901.1 869807 870991 R PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_2000 major facilitator superfamily MFS_1; sugar efflux transporter complement(869807..870991) Shewanella pealeana ATCC 700345 5661106 YP_001500570.1 CDS Spea_0708 NC_009901.1 871391 871843 R PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1378 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(871391..871843) Shewanella pealeana ATCC 700345 5661107 YP_001500571.1 CDS Spea_0709 NC_009901.1 872041 872829 R PFAM: PepSY-associated TM helix domain protein; KEGG: slo:Shew_3122 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(872041..872829) Shewanella pealeana ATCC 700345 5661108 YP_001500572.1 CDS Spea_0710 NC_009901.1 873114 874025 R hypothetical protein complement(873114..874025) Shewanella pealeana ATCC 700345 5661109 YP_001500573.1 CDS Spea_0711 NC_009901.1 874000 874521 R PFAM: FMN-binding domain protein; KEGG: sbl:Sbal_2015 FMN-binding domain protein; FMN-binding domain-containing protein complement(874000..874521) Shewanella pealeana ATCC 700345 5661110 YP_001500574.1 CDS Spea_0712 NC_009901.1 874636 875814 R PFAM: phosphate-selective porin O and P; KEGG: slo:Shew_3120 phosphate-selective porin O and P; phosphate-selective porin O and P complement(874636..875814) Shewanella pealeana ATCC 700345 5661111 YP_001500575.1 CDS Spea_0713 NC_009901.1 876103 878292 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shm:Shewmr7_3399 TonB-dependent receptor; TonB-dependent receptor complement(876103..878292) Shewanella pealeana ATCC 700345 5661112 YP_001500576.1 CDS Spea_0714 NC_009901.1 878528 879232 D KEGG: shn:Shewana3_0631 hypothetical protein; hypothetical protein 878528..879232 Shewanella pealeana ATCC 700345 5661113 YP_001500577.1 CDS Spea_0715 NC_009901.1 879989 881359 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: slo:Shew_0496 amino acid carrier protein; amino acid carrier protein 879989..881359 Shewanella pealeana ATCC 700345 5661114 YP_001500578.1 CDS Spea_0716 NC_009901.1 881772 885446 D KEGG: slo:Shew_3118 hypothetical protein; hypothetical protein 881772..885446 Shewanella pealeana ATCC 700345 5661115 YP_001500579.1 CDS Spea_0717 NC_009901.1 885446 886099 D KEGG: slo:Shew_3117 hypothetical protein; hypothetical protein 885446..886099 Shewanella pealeana ATCC 700345 5661116 YP_001500580.1 CDS Spea_0718 NC_009901.1 886101 887321 D KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein 886101..887321 Shewanella pealeana ATCC 700345 5661117 YP_001500581.1 CDS Spea_0719 NC_009901.1 888179 889435 D PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3503 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 888179..889435 Shewanella pealeana ATCC 700345 5661118 YP_001500582.1 CDS Spea_0720 NC_009901.1 889568 890950 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_3688 two component, sigma54 specific, transcriptional regulator, fis family protein; Fis family two component sigma54 specific transcriptional regulator complement(889568..890950) Shewanella pealeana ATCC 700345 5661119 YP_001500583.1 CDS Spea_0721 NC_009901.1 890950 892977 R PFAM: ATP-binding region ATPase domain protein; SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_3113 histidine kinase; histidine kinase complement(890950..892977) Shewanella pealeana ATCC 700345 5661120 YP_001500584.1 CDS Spea_0722 NC_009901.1 893397 895187 D KEGG: slo:Shew_3112 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 893397..895187 Shewanella pealeana ATCC 700345 5661121 YP_001500585.1 CDS Spea_0723 NC_009901.1 895957 896763 D PFAM: alpha/beta hydrolase fold; KEGG: bld:BLi02552 YqjL; alpha/beta hydrolase fold protein 895957..896763 Shewanella pealeana ATCC 700345 5661122 YP_001500586.1 CDS Spea_0724 NC_009901.1 897237 898313 R KEGG: sdn:Sden_2209 hypothetical protein; hypothetical protein complement(897237..898313) Shewanella pealeana ATCC 700345 5661123 YP_001500587.1 CDS Spea_0725 NC_009901.1 899535 900539 D PFAM: basic membrane lipoprotein; KEGG: pin:Ping_1297 basic membrane lipoprotein; basic membrane lipoprotein 899535..900539 Shewanella pealeana ATCC 700345 5661124 YP_001500588.1 CDS Spea_0726 NC_009901.1 900666 902282 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pin:Ping_1298 ABC transporter ATP-binding protein; ABC transporter-like protein 900666..902282 Shewanella pealeana ATCC 700345 5661125 YP_001500589.1 CDS Spea_0727 NC_009901.1 902279 903409 D PFAM: inner-membrane translocator; KEGG: pin:Ping_1299 ABC transporter inner-membrane translocator; inner-membrane translocator 902279..903409 Shewanella pealeana ATCC 700345 5661126 YP_001500590.1 CDS Spea_0728 NC_009901.1 903413 904378 D PFAM: inner-membrane translocator; KEGG: pin:Ping_1300 ABC sugar transporter inner membrane translocator; inner-membrane translocator 903413..904378 Shewanella pealeana ATCC 700345 5661127 YP_001500591.1 CDS Spea_0729 NC_009901.1 904899 905315 D hypothetical protein 904899..905315 Shewanella pealeana ATCC 700345 5661128 YP_001500592.1 CDS Spea_0730 NC_009901.1 905386 905985 D KEGG: pol:Bpro_1213 hypothetical protein; hypothetical protein 905386..905985 Shewanella pealeana ATCC 700345 5661129 YP_001500593.1 CDS Spea_0731 NC_009901.1 906550 907539 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(906550..907539) Shewanella pealeana ATCC 700345 5661130 YP_001500594.1 CDS Spea_0732 NC_009901.1 907792 910038 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: slo:Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 907792..910038 Shewanella pealeana ATCC 700345 5661131 YP_001500595.1 CDS Spea_0733 NC_009901.1 910471 911187 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0777 two component transcriptional regulator, winged helix family; two-component response regulator complement(910471..911187) Shewanella pealeana ATCC 700345 5661132 YP_001500596.1 CDS Spea_0734 NC_009901.1 911749 912105 D KEGG: slo:Shew_0778 hypothetical protein; hypothetical protein 911749..912105 Shewanella pealeana ATCC 700345 5661133 YP_001500597.1 CDS Spea_0735 NC_009901.1 912895 914265 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 912895..914265 Shewanella pealeana ATCC 700345 5661134 YP_001500598.1 CDS Spea_0736 NC_009901.1 914301 915407 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: shn:Shewana3_0653 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 914301..915407 Shewanella pealeana ATCC 700345 5661135 YP_001500599.1 CDS Spea_0737 NC_009901.1 915685 916146 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(915685..916146) Shewanella pealeana ATCC 700345 5661136 YP_001500600.1 CDS Spea_0738 NC_009901.1 916411 917088 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridine synthase complement(916411..917088) Shewanella pealeana ATCC 700345 5661137 YP_001500601.1 CDS Spea_0739 NC_009901.1 917202 917492 R KEGG: sfr:Sfri_0516 hypothetical protein; hypothetical protein complement(917202..917492) Shewanella pealeana ATCC 700345 5661138 YP_001500602.1 CDS Spea_0740 NC_009901.1 917531 918052 R PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: shn:Shewana3_3316 methyltransferase type 12; type 12 methyltransferase complement(917531..918052) Shewanella pealeana ATCC 700345 5661139 YP_001500603.1 CDS Spea_0741 NC_009901.1 918057 918467 R KEGG: slo:Shew_0786 hypothetical protein; hypothetical protein complement(918057..918467) Shewanella pealeana ATCC 700345 5661140 YP_001500604.1 CDS Spea_0742 NC_009901.1 919122 920111 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: slo:Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 919122..920111 Shewanella pealeana ATCC 700345 5661141 YP_001500605.1 CDS Spea_0743 NC_009901.1 920124 920861 D PFAM: dienelactone hydrolase; KEGG: sfr:Sfri_0519 dienelactone hydrolase; dienelactone hydrolase 920124..920861 Shewanella pealeana ATCC 700345 5661142 YP_001500606.1 CDS Spea_0744 NC_009901.1 920984 921517 R KEGG: she:Shewmr4_0805 hypothetical protein; hypothetical protein complement(920984..921517) Shewanella pealeana ATCC 700345 5661143 YP_001500607.1 CDS Spea_0745 NC_009901.1 921814 922557 D KEGG: slo:Shew_0791 spermine synthase; spermine synthase 921814..922557 Shewanella pealeana ATCC 700345 5661144 YP_001500608.1 CDS Spea_0746 NC_009901.1 923053 923622 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sfr:Sfri_0522 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 923053..923622 Shewanella pealeana ATCC 700345 5661145 YP_001500609.1 CDS Spea_0747 NC_009901.1 923915 925489 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: slo:Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 923915..925489 Shewanella pealeana ATCC 700345 5661146 YP_001500610.1 CDS Spea_0748 NC_009901.1 925608 926735 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0794 diguanylate cyclase; diguanylate cyclase 925608..926735 Shewanella pealeana ATCC 700345 5661147 YP_001500611.1 CDS Spea_0749 NC_009901.1 926794 926991 R KEGG: slo:Shew_0796 hypothetical protein; hypothetical protein complement(926794..926991) Shewanella pealeana ATCC 700345 5661148 YP_001500612.1 CDS Spea_0750 NC_009901.1 927428 928855 R KEGG: slo:Shew_0797 hypothetical protein; hypothetical protein complement(927428..928855) Shewanella pealeana ATCC 700345 5661149 YP_001500613.1 CDS Spea_0751 NC_009901.1 929175 929591 R KEGG: slo:Shew_0798 hypothetical protein; hypothetical protein complement(929175..929591) Shewanella pealeana ATCC 700345 5661150 YP_001500614.1 CDS Spea_0752 NC_009901.1 930076 931251 D PFAM: FAD dependent oxidoreductase; KEGG: spc:Sputcn32_3055 FAD dependent oxidoreductase; FAD dependent oxidoreductase 930076..931251 Shewanella pealeana ATCC 700345 5661151 YP_001500615.1 CDS Spea_0753 NC_009901.1 931409 932596 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: sdn:Sden_3160 chromate transporter; chromate transporter 931409..932596 Shewanella pealeana ATCC 700345 5661152 YP_001500616.1 CDS Spea_0754 NC_009901.1 932673 936995 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(932673..936995) Shewanella pealeana ATCC 700345 5661153 YP_001500617.1 CDS Spea_0755 NC_009901.1 937293 938285 R PFAM: pentapeptide repeat protein; Ion transport 2 domain protein; KEGG: slo:Shew_0810 ion transport 2 domain protein; Ion transport 2 domain-containing protein complement(937293..938285) Shewanella pealeana ATCC 700345 5661154 YP_001500618.1 CDS Spea_0756 NC_009901.1 938835 939716 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: slo:Shew_0811 peptide chain release factor 2; peptide chain release factor 2 938835..939716 Shewanella pealeana ATCC 700345 5661155 YP_001500619.1 CDS lysS NC_009901.1 939729 941234 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 939729..941234 Shewanella pealeana ATCC 700345 5661156 YP_001500620.1 CDS Spea_0758 NC_009901.1 941881 944400 D KEGG: slo:Shew_0813 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 941881..944400 Shewanella pealeana ATCC 700345 5661157 YP_001500621.1 CDS Spea_0759 NC_009901.1 944422 945015 R PFAM: pseudouridine synthase; KEGG: cps:CPS_1154 RNA pseudouridine synthase family protein; pseudouridine synthase complement(944422..945015) Shewanella pealeana ATCC 700345 5661158 YP_001500622.1 CDS Spea_0760 NC_009901.1 945297 946088 D TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: slo:Shew_0815 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 945297..946088 Shewanella pealeana ATCC 700345 5661159 YP_001500623.1 CDS Spea_0761 NC_009901.1 946690 947232 D KEGG: sfr:Sfri_3542 hypothetical protein; hypothetical protein 946690..947232 Shewanella pealeana ATCC 700345 5661160 YP_001500624.1 CDS Spea_0762 NC_009901.1 947312 947983 D PFAM: nitroreductase; KEGG: sfr:Sfri_3203 nitroreductase; nitroreductase 947312..947983 Shewanella pealeana ATCC 700345 5661161 YP_001500625.1 CDS Spea_0763 NC_009901.1 948023 948340 D KEGG: mbu:Mbur_1476 cupin family protein; cupin family protein 948023..948340 Shewanella pealeana ATCC 700345 5661162 YP_001500626.1 CDS Spea_0764 NC_009901.1 948489 950438 D PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32; peptidase U32 948489..950438 Shewanella pealeana ATCC 700345 5661163 YP_001500627.1 CDS Spea_0765 NC_009901.1 950515 950889 D PFAM: protein of unknown function DUF1696; KEGG: slo:Shew_0819 protein of unknown function DUF1696; hypothetical protein 950515..950889 Shewanella pealeana ATCC 700345 5661164 YP_001500628.1 CDS Spea_0766 NC_009901.1 951008 951454 R PFAM: Fe-S metabolism associated SufE; KEGG: shn:Shewana3_0807 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(951008..951454) Shewanella pealeana ATCC 700345 5661165 YP_001500629.1 CDS Spea_0767 NC_009901.1 951760 952971 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: son:SO_3789 aminotransferase, class V; SufS subfamily cysteine desulfurase complement(951760..952971) Shewanella pealeana ATCC 700345 5661166 YP_001500630.1 CDS Spea_0768 NC_009901.1 953172 954215 R PFAM: aldo/keto reductase; KEGG: slo:Shew_0736 aldo/keto reductase; aldo/keto reductase complement(953172..954215) Shewanella pealeana ATCC 700345 5661167 YP_001500631.1 CDS Spea_0769 NC_009901.1 954341 955282 R PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; KEGG: slo:Shew_0737 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator complement(954341..955282) Shewanella pealeana ATCC 700345 5661168 YP_001500632.1 CDS Spea_0770 NC_009901.1 955376 955915 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(955376..955915) Shewanella pealeana ATCC 700345 5661169 YP_001500633.1 CDS Spea_0771 NC_009901.1 956473 957759 D PFAM: aromatic amino acid permease; KEGG: sbm:Shew185_3552 aromatic amino acid permease; aromatic amino acid permease 956473..957759 Shewanella pealeana ATCC 700345 5661170 YP_001500634.1 CDS Spea_0772 NC_009901.1 957934 959301 D KEGG: slo:Shew_0740 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 957934..959301 Shewanella pealeana ATCC 700345 5661171 YP_001500635.1 CDS Spea_0773 NC_009901.1 959385 959828 R PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0762 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(959385..959828) Shewanella pealeana ATCC 700345 5661172 YP_001500636.1 CDS Spea_0774 NC_009901.1 959968 960258 D KEGG: sbm:Shew185_3550 hypothetical protein; hypothetical protein 959968..960258 Shewanella pealeana ATCC 700345 5661173 YP_001500637.1 CDS Spea_0775 NC_009901.1 960429 961727 D PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_0743 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 960429..961727 Shewanella pealeana ATCC 700345 5661174 YP_001500638.1 CDS Spea_0776 NC_009901.1 962027 962440 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sbl:Sbal_0769 protein of unknown function DUF306, MetA and HslJ; hypothetical protein complement(962027..962440) Shewanella pealeana ATCC 700345 5661175 YP_001500639.1 CDS Spea_0777 NC_009901.1 962519 962728 D KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein 962519..962728 Shewanella pealeana ATCC 700345 5661176 YP_001500640.1 CDS Spea_0778 NC_009901.1 962918 963865 R PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0746 diguanylate cyclase; diguanylate cyclase complement(962918..963865) Shewanella pealeana ATCC 700345 5661177 YP_001500641.1 CDS Spea_0779 NC_009901.1 964148 964705 D PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_3545 acetyltransferase, GNAT family; N-acetyltransferase GCN5 964148..964705 Shewanella pealeana ATCC 700345 5661178 YP_001500642.1 CDS Spea_0780 NC_009901.1 964714 965064 D KEGG: sfr:Sfri_0644 hypothetical protein; hypothetical protein 964714..965064 Shewanella pealeana ATCC 700345 5661179 YP_001500643.1 CDS Spea_0781 NC_009901.1 965349 965885 R KEGG: shn:Shewana3_0553 hypothetical protein; hypothetical protein complement(965349..965885) Shewanella pealeana ATCC 700345 5661180 YP_001500644.1 CDS Spea_0782 NC_009901.1 966376 967074 D KEGG: mmw:Mmwyl1_2727 hypothetical protein; hypothetical protein 966376..967074 Shewanella pealeana ATCC 700345 5661181 YP_001500645.1 CDS Spea_0783 NC_009901.1 967539 968558 R hypothetical protein complement(967539..968558) Shewanella pealeana ATCC 700345 5661182 YP_001500646.1 CDS Spea_0784 NC_009901.1 969568 970395 D KEGG: slo:Shew_3061 hypothetical protein; hypothetical protein 969568..970395 Shewanella pealeana ATCC 700345 5661183 YP_001500647.1 CDS Spea_0785 NC_009901.1 970701 971528 D KEGG: slo:Shew_3061 hypothetical protein; hypothetical protein 970701..971528 Shewanella pealeana ATCC 700345 5661184 YP_001500648.1 CDS Spea_0786 NC_009901.1 971651 972124 R PFAM: GCN5-related N-acetyltransferase; KEGG: sfr:Sfri_0645 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(971651..972124) Shewanella pealeana ATCC 700345 5661185 YP_001500649.1 CDS Spea_0787 NC_009901.1 972502 973656 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(972502..973656) Shewanella pealeana ATCC 700345 5661186 YP_001500650.1 CDS Spea_0788 NC_009901.1 974163 976154 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 974163..976154 Shewanella pealeana ATCC 700345 5661187 YP_001500651.1 CDS Spea_0789 NC_009901.1 976253 977272 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 976253..977272 Shewanella pealeana ATCC 700345 5661188 YP_001500652.1 CDS pgk NC_009901.1 977642 978817 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 977642..978817 Shewanella pealeana ATCC 700345 5661189 YP_001500653.1 CDS Spea_0791 NC_009901.1 979126 980190 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 979126..980190 Shewanella pealeana ATCC 700345 5661190 YP_001500654.1 CDS Spea_0792 NC_009901.1 980408 981148 D PFAM: protein of unknown function DUF481; KEGG: slo:Shew_0756 protein of unknown function DUF481; hypothetical protein 980408..981148 Shewanella pealeana ATCC 700345 5661191 YP_001500655.1 CDS Spea_0793 NC_009901.1 981469 982215 D KEGG: sbm:Shew185_3534 transcriptional regulator, CadC; putative transcriptional regulator CadC 981469..982215 Shewanella pealeana ATCC 700345 5661192 YP_001500656.1 CDS Spea_0794 NC_009901.1 982334 982738 D hypothetical protein 982334..982738 Shewanella pealeana ATCC 700345 5661193 YP_001500657.1 CDS Spea_0795 NC_009901.1 982985 984418 D KEGG: slo:Shew_0762 hypothetical protein; hypothetical protein 982985..984418 Shewanella pealeana ATCC 700345 5661194 YP_001500658.1 CDS Spea_0796 NC_009901.1 984632 986851 R TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: slo:Shew_0763 putative PAS/PAC sensor protein; putative diguanylate cyclase complement(984632..986851) Shewanella pealeana ATCC 700345 5661195 YP_001500659.1 CDS Spea_0797 NC_009901.1 986977 987585 R PFAM: Radical SAM domain protein; KEGG: slo:Shew_0764 radical SAM domain protein; radical SAM domain-containing protein complement(986977..987585) Shewanella pealeana ATCC 700345 5661196 YP_001500660.1 CDS Spea_0798 NC_009901.1 987772 988155 D KEGG: sfr:Sfri_3563 transposase; transposase 987772..988155 Shewanella pealeana ATCC 700345 5661197 YP_001500661.1 CDS Spea_0799 NC_009901.1 988272 989000 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit 988272..989000 Shewanella pealeana ATCC 700345 5661198 YP_001500662.1 CDS Spea_0800 NC_009901.1 989039 992185 R PFAM: acriflavin resistance protein; KEGG: sbl:Sbal_0838 acriflavin resistance protein; acriflavin resistance protein complement(989039..992185) Shewanella pealeana ATCC 700345 5661199 YP_001500663.1 CDS Spea_0801 NC_009901.1 992185 993444 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_3337 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(992185..993444) Shewanella pealeana ATCC 700345 5661200 YP_001500664.1 CDS Spea_0802 NC_009901.1 993624 994859 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(993624..994859) Shewanella pealeana ATCC 700345 5661201 YP_001500665.1 CDS Spea_0803 NC_009901.1 994929 995723 R KEGG: slo:Shew_0768 methyltransferase small; methyltransferase small complement(994929..995723) Shewanella pealeana ATCC 700345 5661202 YP_001500666.1 CDS Spea_0804 NC_009901.1 996241 997587 D PFAM: branched-chain amino acid transport system II carrier protein; KEGG: slo:Shew_0769 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 996241..997587 Shewanella pealeana ATCC 700345 5661203 YP_001500667.1 CDS Spea_0805 NC_009901.1 998105 999007 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbm:Shew185_3524 tyrosine recombinase XerD; tyrosine recombinase XerD 998105..999007 Shewanella pealeana ATCC 700345 5661204 YP_001500668.1 CDS Spea_0806 NC_009901.1 999232 999957 D KEGG: son:SO_0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 999232..999957 Shewanella pealeana ATCC 700345 5661205 YP_001500669.1 CDS Spea_0807 NC_009901.1 1000125 1001849 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: slo:Shew_0772 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1000125..1001849 Shewanella pealeana ATCC 700345 5661206 YP_001500670.1 CDS Spea_0808 NC_009901.1 1002397 1002876 R PFAM: regulatory protein AsnC/Lrp family; KEGG: ppr:PBPRA0970 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1002397..1002876) Shewanella pealeana ATCC 700345 5661207 YP_001500671.1 CDS Spea_0809 NC_009901.1 1003095 1004396 D PFAM: protein of unknown function DUF1063; KEGG: ppr:PBPRB0240 hypothetical inner membrane protein; hypothetical protein 1003095..1004396 Shewanella pealeana ATCC 700345 5661208 YP_001500672.1 CDS Spea_0810 NC_009901.1 1005284 1006612 D KEGG: vfi:VF0643 serine transporter; serine transporter 1005284..1006612 Shewanella pealeana ATCC 700345 5661209 YP_001500673.1 CDS Spea_0811 NC_009901.1 1007342 1008724 D KEGG: rco:RC0850 hypothetical protein; hypothetical protein 1007342..1008724 Shewanella pealeana ATCC 700345 5661210 YP_001500674.1 CDS Spea_0812 NC_009901.1 1008854 1009267 D PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0736 hypothetical protein; NUDIX hydrolase 1008854..1009267 Shewanella pealeana ATCC 700345 5661211 YP_001500675.1 CDS Spea_0813 NC_009901.1 1009716 1011041 R PFAM: FAD dependent oxidoreductase; KEGG: bba:Bd0322 D-amino acid dehydrogenase; FAD dependent oxidoreductase complement(1009716..1011041) Shewanella pealeana ATCC 700345 5661212 YP_001500676.1 CDS Spea_0814 NC_009901.1 1011167 1012198 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: ppr:PBPRB1132 putative transcriptional regulator; AraC family transcriptional regulator complement(1011167..1012198) Shewanella pealeana ATCC 700345 5661213 YP_001500677.1 CDS Spea_0815 NC_009901.1 1012326 1012940 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppu:PP_3565 transporter, LysE family; lysine exporter protein LysE/YggA 1012326..1012940 Shewanella pealeana ATCC 700345 5661214 YP_001500678.1 CDS Spea_0816 NC_009901.1 1013154 1013813 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1013154..1013813) Shewanella pealeana ATCC 700345 5661215 YP_001500679.1 CDS Spea_0817 NC_009901.1 1014119 1015063 D PFAM: protein of unknown function DUF808; KEGG: shm:Shewmr7_1013 protein of unknown function DUF808; hypothetical protein 1014119..1015063 Shewanella pealeana ATCC 700345 5661216 YP_001500680.1 CDS Spea_0818 NC_009901.1 1015117 1016256 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pha:PSHAa1702 hypothetical protein; endonuclease/exonuclease/phosphatase 1015117..1016256 Shewanella pealeana ATCC 700345 5661217 YP_001500681.1 CDS Spea_0819 NC_009901.1 1016282 1016761 R PFAM: MORN variant repeat protein; KEGG: fnu:FN0738 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein complement(1016282..1016761) Shewanella pealeana ATCC 700345 5661218 YP_001500682.1 CDS Spea_0820 NC_009901.1 1016981 1018750 D KEGG: shn:Shewana3_3482 alkaline phosphatase; alkaline phosphatase 1016981..1018750 Shewanella pealeana ATCC 700345 5661219 YP_001500683.1 CDS Spea_0821 NC_009901.1 1019275 1019835 D PFAM: phosphoribosyltransferase; KEGG: slo:Shew_0833 hypoxanthine-guanine phosphoribosyltransferase; phosphoribosyltransferase 1019275..1019835 Shewanella pealeana ATCC 700345 5661220 YP_001500684.1 CDS Spea_0822 NC_009901.1 1020216 1020428 R KEGG: slo:Shew_0834 hypothetical protein; hypothetical protein complement(1020216..1020428) Shewanella pealeana ATCC 700345 5661221 YP_001500685.1 CDS Spea_0823 NC_009901.1 1020859 1023528 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: son:SO_1059 aminopeptidase N; aminopeptidase N complement(1020859..1023528) Shewanella pealeana ATCC 700345 5661222 YP_001500686.1 CDS Spea_0824 NC_009901.1 1023747 1024352 R TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shn:Shewana3_0898 conserved hypothetical protein; membrane lipoprotein lipid attachment site complement(1023747..1024352) Shewanella pealeana ATCC 700345 5661223 YP_001500687.1 CDS Spea_0825 NC_009901.1 1024364 1025731 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO_1061 TPR domain protein; hypothetical protein complement(1024364..1025731) Shewanella pealeana ATCC 700345 5661224 YP_001500688.1 CDS Spea_0826 NC_009901.1 1026006 1026218 R PFAM: SlyX family protein; KEGG: slo:Shew_0838 SlyX family protein; SlyX family protein complement(1026006..1026218) Shewanella pealeana ATCC 700345 5661225 YP_001500689.1 CDS Spea_0827 NC_009901.1 1026670 1027437 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_0840 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1026670..1027437 Shewanella pealeana ATCC 700345 5661226 YP_001500690.1 CDS Spea_0828 NC_009901.1 1027702 1028073 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_0841 uncharacterized conserved protein UCP006287; hypothetical protein 1027702..1028073 Shewanella pealeana ATCC 700345 5661227 YP_001500691.1 CDS Spea_0829 NC_009901.1 1028155 1028784 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: slo:Shew_0842 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1028155..1028784) Shewanella pealeana ATCC 700345 5661228 YP_001500692.1 CDS Spea_0830 NC_009901.1 1028876 1030588 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: slo:Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ complement(1028876..1030588) Shewanella pealeana ATCC 700345 5661229 YP_001500693.1 CDS nrfA NC_009901.1 1030831 1032234 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 1030831..1032234 Shewanella pealeana ATCC 700345 5661230 YP_001500694.1 CDS Spea_0832 NC_009901.1 1032804 1033346 R PFAM: isochorismatase hydrolase; KEGG: shw:Sputw3181_0699 isochorismatase hydrolase; isochorismatase hydrolase complement(1032804..1033346) Shewanella pealeana ATCC 700345 5661231 YP_001500695.1 CDS Spea_0833 NC_009901.1 1033605 1033943 D PFAM: nitrogen regulatory protein P-II; KEGG: sfr:Sfri_0623 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1033605..1033943 Shewanella pealeana ATCC 700345 5661232 YP_001500696.1 CDS Spea_0834 NC_009901.1 1033956 1035206 D PFAM: Rh family protein/ammonium transporter; KEGG: sfr:Sfri_0624 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 1033956..1035206 Shewanella pealeana ATCC 700345 5661233 YP_001500697.1 CDS Spea_0835 NC_009901.1 1035491 1035826 D KEGG: saz:Sama_0652 hypothetical protein; hypothetical protein 1035491..1035826 Shewanella pealeana ATCC 700345 5661234 YP_001500698.1 CDS Spea_0836 NC_009901.1 1035910 1037121 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: slo:Shew_0849 TPR repeat-containing protein; hypothetical protein 1035910..1037121 Shewanella pealeana ATCC 700345 5661235 YP_001500699.1 CDS Spea_0837 NC_009901.1 1037516 1038571 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1037516..1038571 Shewanella pealeana ATCC 700345 5661236 YP_001500700.1 CDS Spea_0838 NC_009901.1 1038648 1038764 R KEGG: slo:Shew_0852 hypothetical protein; hypothetical protein complement(1038648..1038764) Shewanella pealeana ATCC 700345 5661237 YP_001500701.1 CDS Spea_0839 NC_009901.1 1039157 1040929 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sfr:Sfri_0630 ABC transporter related; ABC transporter-like protein 1039157..1040929 Shewanella pealeana ATCC 700345 5661238 YP_001500702.1 CDS Spea_0840 NC_009901.1 1041058 1041321 D KEGG: slo:Shew_0854 hypothetical protein; hypothetical protein 1041058..1041321 Shewanella pealeana ATCC 700345 5661239 YP_001500703.1 CDS Spea_0841 NC_009901.1 1041366 1041497 R KEGG: son:SO_0752 hypothetical protein; hypothetical protein complement(1041366..1041497) Shewanella pealeana ATCC 700345 5661240 YP_001500704.1 CDS Spea_0842 NC_009901.1 1041597 1042190 R PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_3352 phosphoglycerate mutase; phosphoglycerate mutase complement(1041597..1042190) Shewanella pealeana ATCC 700345 5661241 YP_001500705.1 CDS Spea_0843 NC_009901.1 1042307 1043056 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shw:Sputw3181_0711 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1042307..1043056 Shewanella pealeana ATCC 700345 5661242 YP_001500706.1 CDS Spea_0844 NC_009901.1 1043372 1044379 D PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0861 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1043372..1044379 Shewanella pealeana ATCC 700345 5661243 YP_001500707.1 CDS Spea_0845 NC_009901.1 1044554 1046185 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1044554..1046185 Shewanella pealeana ATCC 700345 5661244 YP_001500708.1 CDS Spea_0846 NC_009901.1 1046187 1047215 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sbl:Sbal_0603 ABC transporter related; ABC transporter-like protein 1046187..1047215 Shewanella pealeana ATCC 700345 5661245 YP_001500709.1 CDS Spea_0847 NC_009901.1 1047424 1048359 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: slo:Shew_0864 Dyp-type peroxidase family; Dyp-type peroxidase family protein 1047424..1048359 Shewanella pealeana ATCC 700345 5661246 YP_001500710.1 CDS Spea_0848 NC_009901.1 1048431 1048895 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: slo:Shew_0865 cupin 2, conserved barrel domain protein; cupin complement(1048431..1048895) Shewanella pealeana ATCC 700345 5661247 YP_001500711.1 CDS Spea_0849 NC_009901.1 1049159 1049629 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(1049159..1049629) Shewanella pealeana ATCC 700345 5661248 YP_001500712.1 CDS Spea_0850 NC_009901.1 1049981 1050916 D oxidizes malate to oxaloacetate; malate dehydrogenase 1049981..1050916 Shewanella pealeana ATCC 700345 5661249 YP_001500713.1 CDS Spea_0851 NC_009901.1 1050985 1051956 R PFAM: Polyprenyl synthetase; KEGG: slo:Shew_0868 trans-hexaprenyltranstransferase; polyprenyl synthetase complement(1050985..1051956) Shewanella pealeana ATCC 700345 5661250 YP_001500714.1 CDS rplU NC_009901.1 1052239 1052550 D PFAM: ribosomal protein L21; KEGG: slo:Shew_0869 ribosomal protein L21; 50S ribosomal protein L21 1052239..1052550 Shewanella pealeana ATCC 700345 5661251 YP_001500715.1 CDS rpmA NC_009901.1 1052566 1052820 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1052566..1052820 Shewanella pealeana ATCC 700345 5661252 YP_001500716.1 CDS obgE NC_009901.1 1052958 1054121 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1052958..1054121 Shewanella pealeana ATCC 700345 5661253 YP_001500717.1 CDS Spea_0855 NC_009901.1 1054151 1054909 D PFAM: protein of unknown function DUF1212; KEGG: slo:Shew_0872 protein of unknown function DUF1212; hypothetical protein 1054151..1054909 Shewanella pealeana ATCC 700345 5661254 YP_001500718.1 CDS Spea_0856 NC_009901.1 1054909 1055382 D KEGG: sbm:Shew185_1040 hypothetical protein; hypothetical protein 1054909..1055382 Shewanella pealeana ATCC 700345 5661255 YP_001500719.1 CDS Spea_0857 NC_009901.1 1055458 1055940 D PFAM: dihydrofolate reductase region; KEGG: shm:Shewmr7_3120 dihydrofolate reductase; dihydrofolate reductase 1055458..1055940 Shewanella pealeana ATCC 700345 5661256 YP_001500720.1 CDS Spea_0858 NC_009901.1 1056037 1056432 D KEGG: saz:Sama_2823 hypothetical protein; hypothetical protein 1056037..1056432 Shewanella pealeana ATCC 700345 5661257 YP_001500721.1 CDS Spea_0859 NC_009901.1 1056566 1058587 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_0876 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1056566..1058587) Shewanella pealeana ATCC 700345 5661258 YP_001500722.1 CDS apaH NC_009901.1 1058690 1059523 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1058690..1059523) Shewanella pealeana ATCC 700345 5661259 YP_001500723.1 CDS apaG NC_009901.1 1059593 1059973 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(1059593..1059973) Shewanella pealeana ATCC 700345 5661260 YP_001500724.1 CDS ksgA NC_009901.1 1060129 1060932 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1060129..1060932) Shewanella pealeana ATCC 700345 5661261 YP_001500725.1 CDS pdxA NC_009901.1 1060949 1061932 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1060949..1061932) Shewanella pealeana ATCC 700345 5661262 YP_001500726.1 CDS Spea_0864 NC_009901.1 1061938 1063242 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: she:Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein complement(1061938..1063242) Shewanella pealeana ATCC 700345 5661263 YP_001500727.1 CDS Spea_0865 NC_009901.1 1063370 1065694 R PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: slo:Shew_0882 organic solvent tolerance protein; organic solvent tolerance protein complement(1063370..1065694) Shewanella pealeana ATCC 700345 5661264 YP_001500728.1 CDS Spea_0866 NC_009901.1 1065844 1066890 D PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_3111 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1065844..1066890 Shewanella pealeana ATCC 700345 5661265 YP_001500729.1 CDS Spea_0867 NC_009901.1 1066891 1067559 D PFAM: Nucleotidyl transferase; KEGG: shn:Shewana3_3204 nucleotidyl transferase; nucleotidyl transferase 1066891..1067559 Shewanella pealeana ATCC 700345 5661266 YP_001500730.1 CDS djlA NC_009901.1 1067559 1068338 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1067559..1068338 Shewanella pealeana ATCC 700345 5661267 YP_001500731.1 CDS Spea_0869 NC_009901.1 1068393 1069004 D KEGG: slo:Shew_0886 hypothetical protein; hypothetical protein 1068393..1069004 Shewanella pealeana ATCC 700345 5661268 YP_001500732.1 CDS Spea_0870 NC_009901.1 1069095 1070048 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: shm:Shewmr7_3107 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 1069095..1070048 Shewanella pealeana ATCC 700345 5661269 YP_001500733.1 CDS purT NC_009901.1 1070160 1071335 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(1070160..1071335) Shewanella pealeana ATCC 700345 5661270 YP_001500734.1 CDS Spea_0872 NC_009901.1 1071648 1072067 D KEGG: slo:Shew_0889 hypothetical protein; hypothetical protein 1071648..1072067 Shewanella pealeana ATCC 700345 5661271 YP_001500735.1 CDS Spea_0873 NC_009901.1 1072069 1073205 D PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0890 secretion protein HlyD family protein; secretion protein HlyD family protein 1072069..1073205 Shewanella pealeana ATCC 700345 5661272 YP_001500736.1 CDS Spea_0874 NC_009901.1 1073338 1074813 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: slo:Shew_0892 AAA ATPase, central domain protein; ATPase central domain-containing protein 1073338..1074813 Shewanella pealeana ATCC 700345 5661273 YP_001500737.1 CDS Spea_0875 NC_009901.1 1074920 1075474 R KEGG: she:Shewmr4_3009 hypothetical protein; hypothetical protein complement(1074920..1075474) Shewanella pealeana ATCC 700345 5661274 YP_001500738.1 CDS Spea_0876 NC_009901.1 1075600 1075911 D PFAM: protein of unknown function DUF1289; KEGG: slo:Shew_0894 protein of unknown function DUF1289; hypothetical protein 1075600..1075911 Shewanella pealeana ATCC 700345 5661275 YP_001500739.1 CDS Spea_0877 NC_009901.1 1075908 1077176 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: shm:Shewmr7_3088 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(1075908..1077176) Shewanella pealeana ATCC 700345 5661276 YP_001500740.1 CDS Spea_0878 NC_009901.1 1077195 1077908 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0896 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1077195..1077908) Shewanella pealeana ATCC 700345 5661277 YP_001500741.1 CDS Spea_0879 NC_009901.1 1077908 1078291 R KEGG: slo:Shew_0897 hypothetical protein; hypothetical protein complement(1077908..1078291) Shewanella pealeana ATCC 700345 5661278 YP_001500742.1 CDS Spea_0880 NC_009901.1 1078329 1079204 R PFAM: MltA-interacting MipA family protein; KEGG: slo:Shew_0898 MltA-interacting MipA family protein; MltA-interacting MipA family protein complement(1078329..1079204) Shewanella pealeana ATCC 700345 5661279 YP_001500743.1 CDS Spea_0881 NC_009901.1 1079454 1079990 D PFAM: GCN5-related N-acetyltransferase; KEGG: saz:Sama_2792 conserved hypothetical acetyltransferase; N-acetyltransferase GCN5 1079454..1079990 Shewanella pealeana ATCC 700345 5661280 YP_001500744.1 CDS Spea_0882 NC_009901.1 1079987 1080472 R KEGG: shm:Shewmr7_3082 hypothetical protein; hypothetical protein complement(1079987..1080472) Shewanella pealeana ATCC 700345 5661281 YP_001500745.1 CDS Spea_0883 NC_009901.1 1080611 1080946 D PFAM: Protein of unknown function DUF1971; KEGG: sbm:Shew185_1077 protein of unknown function DUF1971; hypothetical protein 1080611..1080946 Shewanella pealeana ATCC 700345 5661282 YP_001500746.1 CDS Spea_0884 NC_009901.1 1081000 1081884 R KEGG: shm:Shewmr7_1169 UspA domain protein; UspA domain-containing protein complement(1081000..1081884) Shewanella pealeana ATCC 700345 5661283 YP_001500747.1 CDS Spea_0885 NC_009901.1 1082858 1083610 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sfr:Sfri_2218 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 1082858..1083610 Shewanella pealeana ATCC 700345 5661284 YP_001500748.1 CDS Spea_0886 NC_009901.1 1083664 1084083 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: slo:Shew_0913 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1083664..1084083) Shewanella pealeana ATCC 700345 5661285 YP_001500749.1 CDS Spea_0887 NC_009901.1 1084127 1084735 R PFAM: NADPH-dependent FMN reductase; KEGG: slo:Shew_0914 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1084127..1084735) Shewanella pealeana ATCC 700345 5661286 YP_001500750.1 CDS Spea_0888 NC_009901.1 1084885 1085520 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: sbl:Sbal_1011 putative transcriptional regulator; putative transcriptional regulator 1084885..1085520 Shewanella pealeana ATCC 700345 5661287 YP_001500751.1 CDS Spea_0889 NC_009901.1 1085524 1086228 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3146 pseudouridine synthase; pseudouridine synthase 1085524..1086228 Shewanella pealeana ATCC 700345 5661288 YP_001500752.1 CDS Spea_0890 NC_009901.1 1086771 1087370 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: vpa:VP0620 hypothetical protein; GPR1/FUN34/yaaH family protein 1086771..1087370 Shewanella pealeana ATCC 700345 5661289 YP_001500753.1 CDS Spea_0891 NC_009901.1 1087484 1089016 R PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0920 major facilitator superfamily MFS_1; major facilitator transporter complement(1087484..1089016) Shewanella pealeana ATCC 700345 5661290 YP_001500754.1 CDS Spea_0892 NC_009901.1 1089579 1090268 R PFAM: LrgB family protein; KEGG: son:SO_1048 hypothetical protein; LrgB family protein complement(1089579..1090268) Shewanella pealeana ATCC 700345 5661291 YP_001500755.1 CDS Spea_0893 NC_009901.1 1090265 1090750 R PFAM: LrgA family protein; KEGG: shn:Shewana3_0885 LrgA family protein; LrgA family protein complement(1090265..1090750) Shewanella pealeana ATCC 700345 5661292 YP_001500756.1 CDS Spea_0894 NC_009901.1 1090859 1091755 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: she:Shewmr4_3051 transcriptional regulator, LysR family; LysR family transcriptional regulator 1090859..1091755 Shewanella pealeana ATCC 700345 5661293 YP_001500757.1 CDS Spea_0895 NC_009901.1 1091886 1092050 R PFAM: protein of unknown function UPF0057; KEGG: slo:Shew_0100 protein of unknown function UPF0057; hypothetical protein complement(1091886..1092050) Shewanella pealeana ATCC 700345 5661294 YP_001500758.1 CDS Spea_0896 NC_009901.1 1092187 1092786 R PFAM: AMMECR1 domain protein; KEGG: ppr:PBPRA1250 hypothetical protein; AMMECR1 domain-containing protein complement(1092187..1092786) Shewanella pealeana ATCC 700345 5661295 YP_001500759.1 CDS Spea_0897 NC_009901.1 1092755 1093591 R PFAM: protein of unknown function DUF52; KEGG: eba:ebA6549 hypothetical protein; hypothetical protein complement(1092755..1093591) Shewanella pealeana ATCC 700345 5661296 YP_001500760.1 CDS Spea_0898 NC_009901.1 1093665 1094774 D PFAM: Radical SAM domain protein; KEGG: slo:Shew_0932 radical SAM domain protein; radical SAM domain-containing protein 1093665..1094774 Shewanella pealeana ATCC 700345 5661297 YP_001500761.1 CDS Spea_0899 NC_009901.1 1094937 1097900 R KEGG: slo:Shew_0921 hypothetical protein; hypothetical protein complement(1094937..1097900) Shewanella pealeana ATCC 700345 5661298 YP_001500762.1 CDS Spea_0900 NC_009901.1 1098306 1100027 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_0922 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1098306..1100027 Shewanella pealeana ATCC 700345 5661299 YP_001500763.1 CDS valS NC_009901.1 1100137 1103052 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1100137..1103052) Shewanella pealeana ATCC 700345 5661300 YP_001500764.1 CDS Spea_0902 NC_009901.1 1103072 1103563 R PFAM: DNA polymerase III chi subunit HolC; KEGG: sbl:Sbal_3111 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit HolC complement(1103072..1103563) Shewanella pealeana ATCC 700345 5661301 YP_001500765.1 CDS Spea_0903 NC_009901.1 1103801 1105090 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: aha:AHA_0632 ATP-dependent RNA helicase, dead box family; DEAD/DEAH box helicase 1103801..1105090 Shewanella pealeana ATCC 700345 5661302 YP_001500766.1 CDS Spea_0904 NC_009901.1 1105164 1106072 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA0031 transcriptional regulators, LysR family; LysR family transcriptional regulator 1105164..1106072 Shewanella pealeana ATCC 700345 5661303 YP_001500767.1 CDS Spea_0905 NC_009901.1 1106069 1106602 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: vfi:VFA0032 thioredoxin peroxidase; alkyl hydroperoxide reductase complement(1106069..1106602) Shewanella pealeana ATCC 700345 5661304 YP_001500768.1 CDS Spea_0906 NC_009901.1 1106694 1107230 R KEGG: swi:Swit_1025 hypothetical protein; hypothetical protein complement(1106694..1107230) Shewanella pealeana ATCC 700345 5661305 YP_001500769.1 CDS Spea_0907 NC_009901.1 1107696 1109018 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: shw:Sputw3181_3757 protein of unknown function DUF21; hypothetical protein 1107696..1109018 Shewanella pealeana ATCC 700345 5661306 YP_001500770.1 CDS Spea_0908 NC_009901.1 1109194 1110411 R PFAM: EAL domain protein; response regulator receiver; KEGG: aha:AHA_0909 response regulator; response regulator receiver modulated diguanylate phosphodiesterase complement(1109194..1110411) Shewanella pealeana ATCC 700345 5661307 YP_001500771.1 CDS Spea_0909 NC_009901.1 1110408 1114409 R PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: cyb:CYB_0507 sensory box histidine kinase/response regulator; Hpt sensor hybrid histidine kinase complement(1110408..1114409) Shewanella pealeana ATCC 700345 5661308 YP_001500772.1 CDS Spea_0910 NC_009901.1 1114869 1116377 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1114869..1116377) Shewanella pealeana ATCC 700345 5661309 YP_001500773.1 CDS Spea_0911 NC_009901.1 1116601 1117716 D PFAM: permease YjgP/YjgQ family protein; KEGG: slo:Shew_0940 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1116601..1117716 Shewanella pealeana ATCC 700345 5661310 YP_001500774.1 CDS Spea_0912 NC_009901.1 1117713 1118771 D PFAM: permease YjgP/YjgQ family protein; KEGG: sbm:Shew185_3117 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1117713..1118771 Shewanella pealeana ATCC 700345 5661311 YP_001500775.1 CDS Spea_0913 NC_009901.1 1118879 1119403 R PFAM: RDD domain containing protein; KEGG: slo:Shew_0942 RDD domain containing protein; RDD domain-containing protein complement(1118879..1119403) Shewanella pealeana ATCC 700345 5661312 YP_001500776.1 CDS Spea_0914 NC_009901.1 1119460 1119714 R KEGG: slo:Shew_0943 hypothetical protein; hypothetical protein complement(1119460..1119714) Shewanella pealeana ATCC 700345 5661313 YP_001500777.1 CDS Spea_0915 NC_009901.1 1119760 1120239 R PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_0944 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1119760..1120239) Shewanella pealeana ATCC 700345 5661314 YP_001500778.1 CDS Spea_0916 NC_009901.1 1120318 1121802 R PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: shn:Shewana3_2999 peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq complement(1120318..1121802) Shewanella pealeana ATCC 700345 5661315 YP_001500779.1 CDS Spea_0917 NC_009901.1 1122306 1124132 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: slo:Shew_2720 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1122306..1124132 Shewanella pealeana ATCC 700345 5661316 YP_001500780.1 CDS Spea_0918 NC_009901.1 1124217 1124855 R KEGG: son:SO_1380 hypothetical protein; hypothetical protein complement(1124217..1124855) Shewanella pealeana ATCC 700345 5661317 YP_001500781.1 CDS Spea_0919 NC_009901.1 1125070 1126368 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shm:Shewmr7_2892 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1125070..1126368) Shewanella pealeana ATCC 700345 5661318 YP_001500782.1 CDS Spea_0920 NC_009901.1 1126757 1128544 R PFAM: creatinase; peptidase M24; KEGG: shm:Shewmr7_2890 peptidase M24; peptidase M24 complement(1126757..1128544) Shewanella pealeana ATCC 700345 5661319 YP_001500783.1 CDS Spea_0921 NC_009901.1 1128794 1129981 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_0953 major facilitator superfamily MFS_1; major facilitator transporter 1128794..1129981 Shewanella pealeana ATCC 700345 5661320 YP_001500784.1 CDS Spea_0922 NC_009901.1 1130192 1131409 D PFAM: creatinase; peptidase M24; KEGG: slo:Shew_0955 peptidase M24; peptidase M24 1130192..1131409 Shewanella pealeana ATCC 700345 5661321 YP_001500785.1 CDS Spea_0923 NC_009901.1 1131675 1132145 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: shn:Shewana3_2983 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(1131675..1132145) Shewanella pealeana ATCC 700345 5661322 YP_001500786.1 CDS Spea_0924 NC_009901.1 1132435 1133505 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO_A0114 outer membrane protein A; OmpA/MotB domain-containing protein 1132435..1133505 Shewanella pealeana ATCC 700345 5661323 YP_001500787.1 CDS Spea_0925 NC_009901.1 1133508 1134908 D PFAM: Ig domain protein group 2 domain protein; KEGG: sfr:Sfri_1018 Ig domain protein, group 2 domain protein; Ig domain-containing protein 1133508..1134908 Shewanella pealeana ATCC 700345 5661324 YP_001500788.1 CDS Spea_0926 NC_009901.1 1134971 1136320 D PFAM: Ig domain protein group 2 domain protein; KEGG: sun:SUN_2457 hypothetical protein; Ig domain-containing protein 1134971..1136320 Shewanella pealeana ATCC 700345 5661325 YP_001500789.1 CDS Spea_0927 NC_009901.1 1136395 1137012 R PFAM: Cold-shock protein DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: sdn:Sden_2865 protein of unknown function DUF1294; cold-shock DNA-binding domain-containing protein complement(1136395..1137012) Shewanella pealeana ATCC 700345 5661326 YP_001500790.1 CDS Spea_0928 NC_009901.1 1137057 1137356 R PFAM: regulatory protein ArsR; KEGG: ppr:PBPRA2744 hypothetical transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(1137057..1137356) Shewanella pealeana ATCC 700345 5661327 YP_001500791.1 CDS Spea_0929 NC_009901.1 1137456 1137956 R KEGG: shm:Shewmr7_2880 hypothetical protein; hypothetical protein complement(1137456..1137956) Shewanella pealeana ATCC 700345 5661328 YP_001500792.1 CDS Spea_0930 NC_009901.1 1138130 1139047 D PFAM: protein of unknown function DUF368; KEGG: slo:Shew_0960 protein of unknown function DUF368; hypothetical protein 1138130..1139047 Shewanella pealeana ATCC 700345 5661329 YP_001500793.1 CDS Spea_0931 NC_009901.1 1139170 1139514 R KEGG: slo:Shew_0961 hypothetical protein; hypothetical protein complement(1139170..1139514) Shewanella pealeana ATCC 700345 5661330 YP_001500794.1 CDS Spea_0932 NC_009901.1 1139689 1139871 D KEGG: slo:Shew_0962 hypothetical protein; hypothetical protein 1139689..1139871 Shewanella pealeana ATCC 700345 5661331 YP_001500795.1 CDS Spea_0933 NC_009901.1 1139998 1140732 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0963 hypothetical protein; hypothetical protein complement(1139998..1140732) Shewanella pealeana ATCC 700345 5661332 YP_001500796.1 CDS Spea_0934 NC_009901.1 1140886 1141272 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: slo:Shew_0964 protein of unknown function DUF861, cupin_3; hypothetical protein complement(1140886..1141272) Shewanella pealeana ATCC 700345 5661333 YP_001500797.1 CDS Spea_0935 NC_009901.1 1141341 1142846 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_0965 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1141341..1142846) Shewanella pealeana ATCC 700345 5661334 YP_001500798.1 CDS Spea_0936 NC_009901.1 1142961 1144301 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1142961..1144301) Shewanella pealeana ATCC 700345 5661335 YP_001500799.1 CDS Spea_0937 NC_009901.1 1144577 1146076 D PFAM: aldehyde dehydrogenase; KEGG: shw:Sputw3181_3079 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 1144577..1146076 Shewanella pealeana ATCC 700345 5661336 YP_001500800.1 CDS Spea_0938 NC_009901.1 1146278 1147474 D PFAM: regulatory protein MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: dps:DPPB100 probable transcription regulator; MerR family transcriptional regulator 1146278..1147474 Shewanella pealeana ATCC 700345 5661337 YP_001500801.1 CDS Spea_0939 NC_009901.1 1147510 1148046 D PFAM: GCN5-related N-acetyltransferase; KEGG: dde:Dde_3171 acetyltransferase; N-acetyltransferase GCN5 1147510..1148046 Shewanella pealeana ATCC 700345 5661338 YP_001500802.1 CDS Spea_0940 NC_009901.1 1148172 1148729 D TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: sfr:Sfri_1665 putative adenylyl cyclase CyaB; putative adenylyl cyclase CyaB 1148172..1148729 Shewanella pealeana ATCC 700345 5661339 YP_001500803.1 CDS Spea_0941 NC_009901.1 1148796 1149488 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: dps:DP1920 hypothetical protein; aspartate racemase 1148796..1149488 Shewanella pealeana ATCC 700345 5661340 YP_001500804.1 CDS Spea_0942 NC_009901.1 1149649 1150956 R PFAM: FAD dependent oxidoreductase; KEGG: she:Shewmr4_2922 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1149649..1150956) Shewanella pealeana ATCC 700345 5661341 YP_001500805.1 CDS Spea_0943 NC_009901.1 1151198 1151746 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: shn:Shewana3_3100 transcriptional regulator, XRE family; XRE family transcriptional regulator 1151198..1151746 Shewanella pealeana ATCC 700345 5661342 YP_001500806.1 CDS Spea_0944 NC_009901.1 1152244 1153005 D PFAM: peptidase C26; KEGG: slo:Shew_0971 peptidase C26; peptidase C26 1152244..1153005 Shewanella pealeana ATCC 700345 5661343 YP_001500807.1 CDS Spea_0945 NC_009901.1 1153008 1154357 D PFAM: glutamine synthetase catalytic region; KEGG: slo:Shew_0972 glutamate--ammonia ligase; glutamate--putrescine ligase 1153008..1154357 Shewanella pealeana ATCC 700345 5661344 YP_001500808.1 CDS Spea_0946 NC_009901.1 1154615 1155715 D PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0973 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1154615..1155715 Shewanella pealeana ATCC 700345 5661345 YP_001500809.1 CDS Spea_0947 NC_009901.1 1155816 1156952 D KEGG: slo:Shew_0974 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1155816..1156952 Shewanella pealeana ATCC 700345 5661346 YP_001500810.1 CDS Spea_0948 NC_009901.1 1156963 1157868 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1156963..1157868 Shewanella pealeana ATCC 700345 5661347 YP_001500811.1 CDS Spea_0949 NC_009901.1 1157865 1158680 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 1157865..1158680 Shewanella pealeana ATCC 700345 5661348 YP_001500812.1 CDS Spea_0950 NC_009901.1 1158843 1160165 D PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_0977 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1158843..1160165 Shewanella pealeana ATCC 700345 5661349 YP_001500813.1 CDS Spea_0951 NC_009901.1 1160248 1161696 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: shn:Shewana3_3092 succinic semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase 1160248..1161696 Shewanella pealeana ATCC 700345 5661350 YP_001500814.1 CDS Spea_0952 NC_009901.1 1161738 1163015 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1161738..1163015 Shewanella pealeana ATCC 700345 5661351 YP_001500815.1 CDS Spea_0953 NC_009901.1 1163125 1163556 R PFAM: UspA domain protein; KEGG: slo:Shew_3101 UspA domain protein; UspA domain-containing protein complement(1163125..1163556) Shewanella pealeana ATCC 700345 5661352 YP_001500816.1 CDS Spea_0954 NC_009901.1 1164302 1164634 D KEGG: vha:VIBHAR_05467 hypothetical protein; hypothetical protein 1164302..1164634 Shewanella pealeana ATCC 700345 5661353 YP_001500817.1 CDS Spea_0955 NC_009901.1 1164638 1166044 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1164638..1166044 Shewanella pealeana ATCC 700345 5661354 YP_001500818.1 CDS Spea_0956 NC_009901.1 1166037 1166651 D PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: vha:VIBHAR_05465 hypothetical protein; cytochrome C oxidase mono-heme subunit/FixO 1166037..1166651 Shewanella pealeana ATCC 700345 5661355 YP_001500819.1 CDS Spea_0957 NC_009901.1 1166653 1168824 D PFAM: cytochrome c class I; KEGG: vha:VIBHAR_05464 hypothetical protein; gluconate 2-dehydrogenase 1166653..1168824 Shewanella pealeana ATCC 700345 5661356 YP_001500820.1 CDS Spea_0958 NC_009901.1 1169239 1171089 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: slo:Shew_0996 RNA polymerase, sigma 70 subunit, RpoD family; RNA polymerase sigma-70 subunit RpoD complement(1169239..1171089) Shewanella pealeana ATCC 700345 5664687 YP_001500821.1 CDS Spea_0959 NC_009901.1 1171207 1172937 R KEGG: slo:Shew_0997 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(1171207..1172937) Shewanella pealeana ATCC 700345 5661358 YP_001500822.1 CDS Spea_0960 NC_009901.1 1173075 1173518 R KEGG: slo:Shew_0998 GatB/YqeY domain protein; GatB/YqeY domain-containing protein complement(1173075..1173518) Shewanella pealeana ATCC 700345 5661359 YP_001500823.1 CDS rpsU NC_009901.1 1173526 1173741 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1173526..1173741) Shewanella pealeana ATCC 700345 5661360 YP_001500824.1 CDS Spea_0962 NC_009901.1 1173970 1174986 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1173970..1174986 Shewanella pealeana ATCC 700345 5661361 YP_001500825.1 CDS Spea_0963 NC_009901.1 1175061 1175735 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: son:SO_3563 SM-20 domain protein; 2OG-Fe(II) oxygenase complement(1175061..1175735) Shewanella pealeana ATCC 700345 5661362 YP_001500826.1 CDS Spea_0964 NC_009901.1 1176000 1176572 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1176000..1176572) Shewanella pealeana ATCC 700345 5661363 YP_001500827.1 CDS Spea_0965 NC_009901.1 1176911 1177264 D TIGRFAM: dihydroneopterin aldolase; KEGG: slo:Shew_1002 dihydroneopterin aldolase; dihydroneopterin aldolase 1176911..1177264 Shewanella pealeana ATCC 700345 5661364 YP_001500828.1 CDS Spea_0966 NC_009901.1 1177265 1177756 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: she:Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1177265..1177756 Shewanella pealeana ATCC 700345 5661365 YP_001500829.1 CDS Spea_0967 NC_009901.1 1177781 1178581 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1177781..1178581 Shewanella pealeana ATCC 700345 5661366 YP_001500830.1 CDS Spea_0968 NC_009901.1 1178635 1179468 D KEGG: slo:Shew_1005 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 1178635..1179468 Shewanella pealeana ATCC 700345 5661367 YP_001500831.1 CDS Spea_0969 NC_009901.1 1179521 1180432 D PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: slo:Shew_1006 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1179521..1180432 Shewanella pealeana ATCC 700345 5661368 YP_001500832.1 CDS Spea_0970 NC_009901.1 1180629 1180895 R KEGG: slo:Shew_1007 major outer membrane lipoprotein, putative; major outer membrane lipoprotein complement(1180629..1180895) Shewanella pealeana ATCC 700345 5661369 YP_001500833.1 CDS Spea_0971 NC_009901.1 1181112 1182350 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: slo:Shew_1008 metal dependent phosphohydrolase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1181112..1182350) Shewanella pealeana ATCC 700345 5661370 YP_001500834.1 CDS Spea_0972 NC_009901.1 1182757 1184433 D PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: slo:Shew_1009 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 1182757..1184433 Shewanella pealeana ATCC 700345 5661371 YP_001500835.1 CDS Spea_0973 NC_009901.1 1184433 1185509 D KEGG: sbm:Shew185_1201 general secretion pathway protein B; general secretion pathway protein B 1184433..1185509 Shewanella pealeana ATCC 700345 5661372 YP_001500836.1 CDS Spea_0974 NC_009901.1 1185605 1186894 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1185605..1186894) Shewanella pealeana ATCC 700345 5661373 YP_001500837.1 CDS Spea_0975 NC_009901.1 1186922 1187941 R Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase complement(1186922..1187941) Shewanella pealeana ATCC 700345 5661374 YP_001500838.1 CDS Spea_0976 NC_009901.1 1188205 1189020 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1188205..1189020 Shewanella pealeana ATCC 700345 5661375 YP_001500839.1 CDS Spea_0977 NC_009901.1 1189129 1191285 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbm:Shew185_0291 TonB-dependent receptor; TonB-dependent receptor complement(1189129..1191285) Shewanella pealeana ATCC 700345 5661376 YP_001500840.1 CDS Spea_0978 NC_009901.1 1191649 1192713 R KEGG: slo:Shew_3159 uncharacterized FlgJ-related protein-like; FlgJ-like protein complement(1191649..1192713) Shewanella pealeana ATCC 700345 5661377 YP_001500841.1 CDS Spea_0979 NC_009901.1 1193085 1193495 R PFAM: cytochrome c class I; KEGG: sbl:Sbal_0009 monoheme cytochrome c; cytochrome c class I complement(1193085..1193495) Shewanella pealeana ATCC 700345 5661378 YP_001500842.1 CDS Spea_0980 NC_009901.1 1193497 1193886 R KEGG: son:SO_0716 monoheme cytochrome c, putative; hypothetical protein complement(1193497..1193886) Shewanella pealeana ATCC 700345 5661379 YP_001500843.1 CDS Spea_0981 NC_009901.1 1193886 1195112 R PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: sbl:Sbal_0007 oxidoreductase, molybdopterin binding; molybdopterin-binding oxidoreductase complement(1193886..1195112) Shewanella pealeana ATCC 700345 5661380 YP_001500844.1 CDS Spea_0982 NC_009901.1 1195112 1195432 R PFAM: cytochrome c class I; KEGG: sbl:Sbal_0006 monoheme cytochrome c; cytochrome c class I complement(1195112..1195432) Shewanella pealeana ATCC 700345 5661381 YP_001500845.1 CDS Spea_0983 NC_009901.1 1196074 1197795 R PFAM: Chloride channel core; KEGG: slo:Shew_1015 Cl-channel, voltage-gated family protein; chloride channel protein complement(1196074..1197795) Shewanella pealeana ATCC 700345 5661382 YP_001500846.1 CDS Spea_0984 NC_009901.1 1197857 1198660 D KEGG: slo:Shew_1016 hypothetical protein; hypothetical protein 1197857..1198660 Shewanella pealeana ATCC 700345 5661383 YP_001500847.1 CDS Spea_0985 NC_009901.1 1198653 1199003 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1198653..1199003 Shewanella pealeana ATCC 700345 5661384 YP_001500848.1 CDS Spea_0986 NC_009901.1 1199079 1199471 R KEGG: slo:Shew_1018 hypothetical protein; hypothetical protein complement(1199079..1199471) Shewanella pealeana ATCC 700345 5661385 YP_001500849.1 CDS Spea_0987 NC_009901.1 1199704 1200084 R KEGG: shw:Sputw3181_3039 hypothetical protein; hypothetical protein complement(1199704..1200084) Shewanella pealeana ATCC 700345 5661386 YP_001500850.1 CDS Spea_0988 NC_009901.1 1200210 1200917 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(1200210..1200917) Shewanella pealeana ATCC 700345 5661387 YP_001500851.1 CDS Spea_0989 NC_009901.1 1201053 1202495 R PFAM: Alkaline phosphatase; KEGG: vpa:VPA1073 putative alkaline phosphatase; alkaline phosphatase complement(1201053..1202495) Shewanella pealeana ATCC 700345 5661388 YP_001500852.1 CDS Spea_0990 NC_009901.1 1202509 1205031 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2884 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(1202509..1205031) Shewanella pealeana ATCC 700345 5661389 YP_001500853.1 CDS Spea_0991 NC_009901.1 1205124 1207901 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: vvy:VV0250 outer membrane receptor protein; TonB-dependent receptor complement(1205124..1207901) Shewanella pealeana ATCC 700345 5661390 YP_001500854.1 CDS Spea_0992 NC_009901.1 1208255 1210402 D PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_2965 transcriptional regulator domain protein; winged helix family two component response transcriptional regulator 1208255..1210402 Shewanella pealeana ATCC 700345 5661391 YP_001500855.1 CDS anmK NC_009901.1 1210630 1211739 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1210630..1211739) Shewanella pealeana ATCC 700345 5661392 YP_001500856.1 CDS Spea_0994 NC_009901.1 1211799 1213211 R PFAM: peptidase M23B; Opacity-associated protein A domain protein; KEGG: slo:Shew_1021 peptidase M23B; peptidase M23B complement(1211799..1213211) Shewanella pealeana ATCC 700345 5661393 YP_001500857.1 CDS Spea_0995 NC_009901.1 1213339 1214535 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1213339..1214535 Shewanella pealeana ATCC 700345 5661394 YP_001500858.1 CDS Spea_0996 NC_009901.1 1214613 1215023 R KEGG: shm:Shewmr7_2961 hypothetical protein; hypothetical protein complement(1214613..1215023) Shewanella pealeana ATCC 700345 5661395 YP_001500859.1 CDS Spea_0997 NC_009901.1 1215242 1215721 R KEGG: slo:Shew_1023 hypothetical protein; hypothetical protein complement(1215242..1215721) Shewanella pealeana ATCC 700345 5661396 YP_001500860.1 CDS Spea_0998 NC_009901.1 1215721 1216344 R PFAM: protein of unknown function UPF0126; KEGG: slo:Shew_1024 protein of unknown function UPF0126; hypothetical protein complement(1215721..1216344) Shewanella pealeana ATCC 700345 5661397 YP_001500861.1 CDS Spea_0999 NC_009901.1 1216341 1216730 R KEGG: slo:Shew_1025 hypothetical protein; hypothetical protein complement(1216341..1216730) Shewanella pealeana ATCC 700345 5661398 YP_001500862.1 CDS Spea_1000 NC_009901.1 1216887 1217867 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: shn:Shewana3_3053 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB complement(1216887..1217867) Shewanella pealeana ATCC 700345 5661399 YP_001500863.1 CDS Spea_1001 NC_009901.1 1217954 1218646 R PFAM: purine or other phosphorylase family 1; KEGG: shn:Shewana3_3052 purine and other phosphorylases, family 1; adenosylhomocysteine nucleosidase complement(1217954..1218646) Shewanella pealeana ATCC 700345 5661400 YP_001500864.1 CDS Spea_1002 NC_009901.1 1219028 1220359 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE3 domain protein; KEGG: pin:Ping_3077 diguanylate cyclase; diguanylate cyclase 1219028..1220359 Shewanella pealeana ATCC 700345 5661401 YP_001500865.1 CDS Spea_1003 NC_009901.1 1220434 1220889 D PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_0291 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1220434..1220889 Shewanella pealeana ATCC 700345 5661402 YP_001500866.1 CDS Spea_1004 NC_009901.1 1220902 1221375 R PFAM: regulatory protein MarR; KEGG: sfr:Sfri_1943 transcriptional regulator, MarR family protein; MarR family transcriptional regulator complement(1220902..1221375) Shewanella pealeana ATCC 700345 5661403 YP_001500867.1 CDS Spea_1005 NC_009901.1 1221568 1222272 R PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_1944 hypothetical protein; hypothetical protein complement(1221568..1222272) Shewanella pealeana ATCC 700345 5661404 YP_001500868.1 CDS Spea_1006 NC_009901.1 1222292 1223509 R KEGG: sfr:Sfri_1945 putative transporter, BCCT family protein; putative BCCT family protein transporter complement(1222292..1223509) Shewanella pealeana ATCC 700345 5661405 YP_001500869.1 CDS Spea_1007 NC_009901.1 1223842 1225539 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(1223842..1225539) Shewanella pealeana ATCC 700345 5661406 YP_001500870.1 CDS Spea_1008 NC_009901.1 1225549 1227012 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(1225549..1227012) Shewanella pealeana ATCC 700345 5661407 YP_001500871.1 CDS Spea_1009 NC_009901.1 1227003 1227608 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(1227003..1227608) Shewanella pealeana ATCC 700345 5661408 YP_001500872.1 CDS Spea_1010 NC_009901.1 1228104 1229078 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sfr:Sfri_3408 inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 1228104..1229078 Shewanella pealeana ATCC 700345 5661409 YP_001500873.1 CDS Spea_1011 NC_009901.1 1229331 1230527 R PFAM: regulatory protein DeoR; PfkB domain protein; Helix-turn-helix type 11 domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: sfr:Sfri_3407 ribokinase; ribokinase-like domain-containing protein complement(1229331..1230527) Shewanella pealeana ATCC 700345 5661410 YP_001500874.1 CDS gltD NC_009901.1 1230944 1232353 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1230944..1232353) Shewanella pealeana ATCC 700345 5661411 YP_001500875.1 CDS gltB NC_009901.1 1232360 1236808 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(1232360..1236808) Shewanella pealeana ATCC 700345 5661412 YP_001500876.1 CDS Spea_1014 NC_009901.1 1237298 1238227 D KEGG: slo:Shew_1033 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 1237298..1238227 Shewanella pealeana ATCC 700345 5661413 YP_001500877.1 CDS Spea_1015 NC_009901.1 1238430 1238795 D PFAM: Hpt domain protein; KEGG: shm:Shewmr7_2951 Hpt protein; Hpt protein 1238430..1238795 Shewanella pealeana ATCC 700345 5661414 YP_001500878.1 CDS Spea_1016 NC_009901.1 1238980 1239915 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_1035 transcriptional regulator, LysR family; LysR family transcriptional regulator 1238980..1239915 Shewanella pealeana ATCC 700345 5661415 YP_001500879.1 CDS Spea_1017 NC_009901.1 1240325 1241053 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit complement(1240325..1241053) Shewanella pealeana ATCC 700345 5661416 YP_001500880.1 CDS Spea_1018 NC_009901.1 1241170 1241553 R KEGG: sfr:Sfri_3563 transposase; transposase complement(1241170..1241553) Shewanella pealeana ATCC 700345 5661417 YP_001500881.1 CDS Spea_1019 NC_009901.1 1241646 1242719 R KEGG: sbm:Shew185_1226 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase complement(1241646..1242719) Shewanella pealeana ATCC 700345 5661418 YP_001500882.1 CDS Spea_1020 NC_009901.1 1242845 1243516 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1242845..1243516) Shewanella pealeana ATCC 700345 5661419 YP_001500883.1 CDS Spea_1021 NC_009901.1 1244208 1244729 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1244208..1244729 Shewanella pealeana ATCC 700345 5661420 YP_001500884.1 CDS Spea_1022 NC_009901.1 1244748 1246982 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: shm:Shewmr7_2946 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1244748..1246982 Shewanella pealeana ATCC 700345 5661421 YP_001500885.1 CDS Spea_1023 NC_009901.1 1247057 1247857 D PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2945 protein of unknown function DUF81; hypothetical protein 1247057..1247857 Shewanella pealeana ATCC 700345 5661422 YP_001500886.1 CDS thyA NC_009901.1 1247941 1248792 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1247941..1248792 Shewanella pealeana ATCC 700345 5661423 YP_001500887.1 CDS nhaA NC_009901.1 1249284 1250459 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1249284..1250459 Shewanella pealeana ATCC 700345 5661424 YP_001500888.1 CDS Spea_1026 NC_009901.1 1250456 1250839 D KEGG: slo:Shew_1043 hypothetical protein; hypothetical protein 1250456..1250839 Shewanella pealeana ATCC 700345 5661425 YP_001500889.1 CDS nhaR NC_009901.1 1250909 1251817 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1250909..1251817 Shewanella pealeana ATCC 700345 5661426 YP_001500890.1 CDS Spea_1028 NC_009901.1 1251978 1252217 D PFAM: protein of unknown function DUF339; KEGG: sfr:Sfri_2938 protein of unknown function DUF339; hypothetical protein 1251978..1252217 Shewanella pealeana ATCC 700345 5661427 YP_001500891.1 CDS Spea_1029 NC_009901.1 1252198 1252614 D KEGG: sbm:Shew185_1237 hypothetical protein; hypothetical protein 1252198..1252614 Shewanella pealeana ATCC 700345 5661428 YP_001500892.1 CDS Spea_1030 NC_009901.1 1252672 1254282 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1252672..1254282) Shewanella pealeana ATCC 700345 5661429 YP_001500893.1 CDS Spea_1031 NC_009901.1 1254502 1255080 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1254502..1255080 Shewanella pealeana ATCC 700345 5661430 YP_001500894.1 CDS Spea_1032 NC_009901.1 1255104 1255709 D PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: slo:Shew_1049 anti sigma-E protein, RseA; anti sigma-E protein, RseA 1255104..1255709 Shewanella pealeana ATCC 700345 5661431 YP_001500895.1 CDS Spea_1033 NC_009901.1 1255722 1256654 D PFAM: MucB/RseB family protein; KEGG: she:Shewmr4_2852 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 1255722..1256654 Shewanella pealeana ATCC 700345 5661432 YP_001500896.1 CDS Spea_1034 NC_009901.1 1256668 1257132 D PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: sbl:Sbal_1198 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC 1256668..1257132 Shewanella pealeana ATCC 700345 5661433 YP_001500897.1 CDS Spea_1035 NC_009901.1 1257261 1259051 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1257261..1259051 Shewanella pealeana ATCC 700345 5661434 YP_001500898.1 CDS Spea_1036 NC_009901.1 1259192 1260109 D KEGG: slo:Shew_1053 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1259192..1260109 Shewanella pealeana ATCC 700345 5661435 YP_001500899.1 CDS rnc NC_009901.1 1260111 1260788 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1260111..1260788 Shewanella pealeana ATCC 700345 5661436 YP_001500900.1 CDS era NC_009901.1 1260785 1261777 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1260785..1261777 Shewanella pealeana ATCC 700345 5661437 YP_001500901.1 CDS Spea_1039 NC_009901.1 1261937 1262626 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: slo:Shew_1056 DNA repair protein RecO; DNA repair protein RecO 1261937..1262626 Shewanella pealeana ATCC 700345 5661438 YP_001500902.1 CDS Spea_1040 NC_009901.1 1262750 1263487 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1262750..1263487 Shewanella pealeana ATCC 700345 5661439 YP_001500903.1 CDS acpS NC_009901.1 1263587 1263982 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1263587..1263982 Shewanella pealeana ATCC 700345 5661440 YP_001500904.1 CDS Spea_1042 NC_009901.1 1263996 1264484 R PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG10906 spermine/spermidine acetyltransferase; N-acetyltransferase GCN5 complement(1263996..1264484) Shewanella pealeana ATCC 700345 5661441 YP_001500905.1 CDS Spea_1043 NC_009901.1 1264914 1265855 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: zmo:ZMO1573 predicted iron-dependent peroxidase; Dyp-type peroxidase family protein complement(1264914..1265855) Shewanella pealeana ATCC 700345 5661442 YP_001500906.1 CDS Spea_1044 NC_009901.1 1266453 1267511 D KEGG: slo:Shew_2460 hypothetical protein; hypothetical protein 1266453..1267511 Shewanella pealeana ATCC 700345 5661443 YP_001500907.1 CDS Spea_1045 NC_009901.1 1267843 1268376 D PFAM: protein of unknown function DUF962; KEGG: slo:Shew_1059 protein of unknown function DUF962; hypothetical protein 1267843..1268376 Shewanella pealeana ATCC 700345 5661444 YP_001500908.1 CDS Spea_1046 NC_009901.1 1268473 1269756 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: slo:Shew_1060 protein of unknown function DUF21; hypothetical protein complement(1268473..1269756) Shewanella pealeana ATCC 700345 5661445 YP_001500909.1 CDS Spea_1047 NC_009901.1 1269902 1270690 R PFAM: cytochrome c assembly protein; KEGG: slo:Shew_1061 cytochrome c assembly protein; cytochrome c assembly protein complement(1269902..1270690) Shewanella pealeana ATCC 700345 5661446 YP_001500910.1 CDS Spea_1048 NC_009901.1 1271098 1272471 D with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1271098..1272471 Shewanella pealeana ATCC 700345 5661447 YP_001500911.1 CDS rpsP NC_009901.1 1272689 1272940 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1272689..1272940 Shewanella pealeana ATCC 700345 5661448 YP_001500912.1 CDS rimM NC_009901.1 1272961 1273491 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1272961..1273491 Shewanella pealeana ATCC 700345 5661449 YP_001500913.1 CDS trmD NC_009901.1 1273507 1274253 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1273507..1274253 Shewanella pealeana ATCC 700345 5661450 YP_001500914.1 CDS rplS NC_009901.1 1274290 1274643 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1274290..1274643 Shewanella pealeana ATCC 700345 5661451 YP_001500915.1 CDS Spea_1053 NC_009901.1 1275021 1276112 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1275021..1276112 Shewanella pealeana ATCC 700345 5661452 YP_001500916.1 CDS tyrA NC_009901.1 1276112 1277266 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1276112..1277266 Shewanella pealeana ATCC 700345 5661453 YP_001500917.1 CDS Spea_1055 NC_009901.1 1277672 1279336 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1277672..1279336 Shewanella pealeana ATCC 700345 5661454 YP_001500918.1 CDS Spea_1056 NC_009901.1 1279439 1280563 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: slo:Shew_1070 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1279439..1280563 Shewanella pealeana ATCC 700345 5661455 YP_001500919.1 CDS Spea_1057 NC_009901.1 1280747 1281085 D KEGG: sfr:Sfri_2914 hypothetical protein; hypothetical protein 1280747..1281085 Shewanella pealeana ATCC 700345 5661456 YP_001500920.1 CDS Spea_1058 NC_009901.1 1281133 1282419 D PFAM: sodium/hydrogen exchanger; KEGG: sbm:Shew185_1263 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1281133..1282419 Shewanella pealeana ATCC 700345 5661457 YP_001500921.1 CDS Spea_1059 NC_009901.1 1282497 1284470 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sbm:Shew185_1264 chorismate mutase; chorismate mutase complement(1282497..1284470) Shewanella pealeana ATCC 700345 5661458 YP_001500922.1 CDS Spea_1060 NC_009901.1 1284778 1285140 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: slo:Shew_1073 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1284778..1285140) Shewanella pealeana ATCC 700345 5661459 YP_001500923.1 CDS Spea_1061 NC_009901.1 1285450 1286142 D PFAM: cytochrome B561; KEGG: sbl:Sbal_1222 cytochrome b561; cytochrome B561 1285450..1286142 Shewanella pealeana ATCC 700345 5661460 YP_001500924.1 CDS Spea_1062 NC_009901.1 1286241 1286702 R PFAM: cytochrome c class II; KEGG: slo:Shew_1075 cytochrome c, class II; cytochrome c class II complement(1286241..1286702) Shewanella pealeana ATCC 700345 5661461 YP_001500925.1 CDS Spea_1063 NC_009901.1 1286927 1287202 D TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: slo:Shew_1076 Trp operon repressor; Trp operon repressor 1286927..1287202 Shewanella pealeana ATCC 700345 5661462 YP_001500926.1 CDS Spea_1064 NC_009901.1 1287235 1287639 R KEGG: shn:Shewana3_1137 hypothetical protein; hypothetical protein complement(1287235..1287639) Shewanella pealeana ATCC 700345 5661463 YP_001500927.1 CDS Spea_1065 NC_009901.1 1287793 1288452 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_1078 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(1287793..1288452) Shewanella pealeana ATCC 700345 5661464 YP_001500928.1 CDS thrA NC_009901.1 1289165 1291630 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1289165..1291630 Shewanella pealeana ATCC 700345 5661465 YP_001500929.1 CDS Spea_1067 NC_009901.1 1291627 1292562 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1291627..1292562 Shewanella pealeana ATCC 700345 5661466 YP_001500930.1 CDS Spea_1068 NC_009901.1 1292605 1293891 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1292605..1293891 Shewanella pealeana ATCC 700345 5661467 YP_001500931.1 CDS Spea_1069 NC_009901.1 1294161 1294451 D KEGG: sbm:Shew185_1274 hypothetical protein; hypothetical protein 1294161..1294451 Shewanella pealeana ATCC 700345 5661468 YP_001500932.1 CDS Spea_1070 NC_009901.1 1294467 1295321 R KEGG: slo:Shew_1083 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 complement(1294467..1295321) Shewanella pealeana ATCC 700345 5661469 YP_001500933.1 CDS Spea_1071 NC_009901.1 1295548 1296099 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sfr:Sfri_2903 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation-binding domain-containing protein 1295548..1296099 Shewanella pealeana ATCC 700345 5661470 YP_001500934.1 CDS Spea_1072 NC_009901.1 1296160 1296345 R KEGG: son:SO_3548 hypothetical protein; hypothetical protein complement(1296160..1296345) Shewanella pealeana ATCC 700345 5661471 YP_001500935.1 CDS pgi NC_009901.1 1296964 1298601 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1296964..1298601) Shewanella pealeana ATCC 700345 5661472 YP_001500936.1 CDS Spea_1074 NC_009901.1 1298619 1299575 R KEGG: slo:Shew_1089 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(1298619..1299575) Shewanella pealeana ATCC 700345 5661473 YP_001500937.1 CDS Spea_1075 NC_009901.1 1299860 1300957 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: slo:Shew_1090 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(1299860..1300957) Shewanella pealeana ATCC 700345 5661474 YP_001500938.1 CDS Spea_1076 NC_009901.1 1301193 1303559 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: slo:Shew_1091 phosphoketolase; putative phosphoketolase complement(1301193..1303559) Shewanella pealeana ATCC 700345 5661475 YP_001500939.1 CDS Spea_1077 NC_009901.1 1303980 1305461 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO_3541 sodium:alanine symporter family protein; amino acid carrier protein 1303980..1305461 Shewanella pealeana ATCC 700345 5661476 YP_001500940.1 CDS Spea_1078 NC_009901.1 1305567 1306340 D PFAM: protein of unknown function DUF328; KEGG: slo:Shew_1093 protein of unknown function DUF328; hypothetical protein 1305567..1306340 Shewanella pealeana ATCC 700345 5661477 YP_001500941.1 CDS Spea_1079 NC_009901.1 1306950 1307264 D PFAM: regulatory protein ArsR; KEGG: saz:Sama_0920 transcriptional regulator HlyU; ArsR family transcriptional regulator 1306950..1307264 Shewanella pealeana ATCC 700345 5661478 YP_001500942.1 CDS rpsT NC_009901.1 1307577 1307843 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1307577..1307843) Shewanella pealeana ATCC 700345 5661479 YP_001500943.1 CDS Spea_1081 NC_009901.1 1308099 1309658 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO_3534 MviN protein; integral membrane protein MviN 1308099..1309658 Shewanella pealeana ATCC 700345 5661480 YP_001500944.1 CDS Spea_1082 NC_009901.1 1309724 1310659 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: slo:Shew_1098 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1309724..1310659 Shewanella pealeana ATCC 700345 5661481 YP_001500945.1 CDS ileS NC_009901.1 1310691 1313513 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1310691..1313513 Shewanella pealeana ATCC 700345 5661482 YP_001500946.1 CDS lspA NC_009901.1 1313634 1314146 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1313634..1314146 Shewanella pealeana ATCC 700345 5661483 YP_001500947.1 CDS Spea_1085 NC_009901.1 1314152 1314574 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_1101 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1314152..1314574 Shewanella pealeana ATCC 700345 5661484 YP_001500948.1 CDS ispH NC_009901.1 1314577 1315506 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1314577..1315506 Shewanella pealeana ATCC 700345 5661485 YP_001500949.1 CDS Spea_1087 NC_009901.1 1315749 1316309 D TIGRFAM: type IV pilus modification protein PilV; KEGG: son:SO_3528 type IV pilus assembly protein PilV; type IV pilus modification protein PilV 1315749..1316309 Shewanella pealeana ATCC 700345 5661486 YP_001500950.1 CDS Spea_1088 NC_009901.1 1316314 1317303 D KEGG: sbl:Sbal_1059 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW 1316314..1317303 Shewanella pealeana ATCC 700345 5661487 YP_001500951.1 CDS Spea_1089 NC_009901.1 1317314 1317751 D KEGG: sbm:Shew185_1127 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1317314..1317751 Shewanella pealeana ATCC 700345 5661488 YP_001500952.1 CDS Spea_1090 NC_009901.1 1317754 1321338 D KEGG: sdn:Sden_2716 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1317754..1321338 Shewanella pealeana ATCC 700345 5661489 YP_001500953.1 CDS Spea_1091 NC_009901.1 1321347 1321739 D KEGG: shw:Sputw3181_3098 methylation site containing protein; methylation site containing protein 1321347..1321739 Shewanella pealeana ATCC 700345 5661490 YP_001500954.1 CDS Spea_1092 NC_009901.1 1321790 1322041 D KEGG: she:Shewmr4_2948 hypothetical protein; hypothetical protein 1321790..1322041 Shewanella pealeana ATCC 700345 5661491 YP_001500955.1 CDS Spea_1093 NC_009901.1 1322086 1322622 R KEGG: sdn:Sden_2713 type IV pilus biogenesis protein, putative; type IV pilus biogenesis protein complement(1322086..1322622) Shewanella pealeana ATCC 700345 5661492 YP_001500956.1 CDS Spea_1094 NC_009901.1 1322785 1323297 R KEGG: slo:Shew_1109 type IV pilus biogenesis protein, putative; type IV pilus biogenesis protein complement(1322785..1323297) Shewanella pealeana ATCC 700345 5661493 YP_001500957.1 CDS Spea_1095 NC_009901.1 1323545 1323883 D PFAM: nitrogen regulatory protein P-II; KEGG: saz:Sama_0935 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1323545..1323883 Shewanella pealeana ATCC 700345 5661494 YP_001500958.1 CDS Spea_1096 NC_009901.1 1323979 1324995 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: saz:Sama_0937 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1323979..1324995) Shewanella pealeana ATCC 700345 5661495 YP_001500959.1 CDS Spea_1097 NC_009901.1 1325416 1328025 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_1112 TonB-dependent receptor; TonB-dependent receptor 1325416..1328025 Shewanella pealeana ATCC 700345 5661496 YP_001500960.1 CDS Spea_1098 NC_009901.1 1328192 1329718 D PFAM: tryptophan halogenase; KEGG: slo:Shew_1113 tryptophan halogenase; tryptophan halogenase 1328192..1329718 Shewanella pealeana ATCC 700345 5661497 YP_001500961.1 CDS Spea_1099 NC_009901.1 1329785 1330513 R PFAM: SapC family protein; KEGG: slo:Shew_1114 SapC family protein; SapC family protein complement(1329785..1330513) Shewanella pealeana ATCC 700345 5661498 YP_001500962.1 CDS Spea_1100 NC_009901.1 1331282 1334002 D PFAM: Carbohydrate-binding chitobiase/hexosaminidase-type domain protein; glycoside hydrolase family 20 domain protein; Glycoside hydrolase, family 20, catalytic core; KEGG: spc:Sputcn32_1075 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1331282..1334002 Shewanella pealeana ATCC 700345 5661499 YP_001500963.1 CDS Spea_1101 NC_009901.1 1334240 1335136 D PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: she:Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 1334240..1335136 Shewanella pealeana ATCC 700345 5661500 YP_001500964.1 CDS Spea_1102 NC_009901.1 1335168 1336301 D KEGG: son:SO_3505 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1335168..1336301 Shewanella pealeana ATCC 700345 5661501 YP_001500965.1 CDS Spea_1103 NC_009901.1 1336417 1337601 D KEGG: slo:Shew_1118 hypothetical protein; hypothetical protein 1336417..1337601 Shewanella pealeana ATCC 700345 5661502 YP_001500966.1 CDS Spea_1104 NC_009901.1 1337892 1339205 D TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: saz:Sama_0948 multiple antibiotic resistance (MarC)-related protein; glucose/galactose transporter 1337892..1339205 Shewanella pealeana ATCC 700345 5661503 YP_001500967.1 CDS Spea_1105 NC_009901.1 1341198 1341596 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 1341198..1341596 Shewanella pealeana ATCC 700345 5664691 YP_001500968.1 CDS Spea_1106 NC_009901.1 1341680 1342432 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 1341680..1342432 Shewanella pealeana ATCC 700345 5661505 YP_001500969.1 CDS Spea_1107 NC_009901.1 1343112 1343390 R PFAM: Fe(II) trafficking protein YggX; KEGG: slo:Shew_1122 Fe(II) trafficking protein YggX; hypothetical protein complement(1343112..1343390) Shewanella pealeana ATCC 700345 5664693 YP_001500970.1 CDS Spea_1108 NC_009901.1 1343393 1344457 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: she:Shewmr4_1180 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1343393..1344457) Shewanella pealeana ATCC 700345 5661507 YP_001500971.1 CDS trmB NC_009901.1 1344730 1345443 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1344730..1345443 Shewanella pealeana ATCC 700345 5661508 YP_001500972.1 CDS Spea_1110 NC_009901.1 1345494 1345820 D PFAM: protein of unknown function DUF469; KEGG: sdn:Sden_2696 protein of unknown function DUF469; hypothetical protein 1345494..1345820 Shewanella pealeana ATCC 700345 5661509 YP_001500973.1 CDS Spea_1111 NC_009901.1 1345820 1346734 D catalyzes the formation of glutamate from glutamine; glutaminase 1345820..1346734 Shewanella pealeana ATCC 700345 5661510 YP_001500974.1 CDS Spea_1112 NC_009901.1 1346968 1347783 D KEGG: slo:Shew_1127 hypothetical protein; hypothetical protein 1346968..1347783 Shewanella pealeana ATCC 700345 5661511 YP_001500975.1 CDS Spea_1113 NC_009901.1 1348137 1349078 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_1128 transcriptional regulator, LysR family; LysR family transcriptional regulator 1348137..1349078 Shewanella pealeana ATCC 700345 5661512 YP_001500976.1 CDS Spea_1114 NC_009901.1 1349870 1350886 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1349870..1350886 Shewanella pealeana ATCC 700345 5661513 YP_001500977.1 CDS Spea_1115 NC_009901.1 1351573 1351833 D hypothetical protein 1351573..1351833 Shewanella pealeana ATCC 700345 5661514 YP_001500978.1 CDS Spea_1116 NC_009901.1 1352097 1354082 D hypothetical protein 1352097..1354082 Shewanella pealeana ATCC 700345 5661515 YP_001500979.1 CDS Spea_1117 NC_009901.1 1354169 1355326 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cps:CPS_3436 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1354169..1355326) Shewanella pealeana ATCC 700345 5661516 YP_001500980.1 CDS Spea_1118 NC_009901.1 1355486 1356382 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vvy:VVA1368 putative transcriptional regulator; LysR family transcriptional regulator 1355486..1356382 Shewanella pealeana ATCC 700345 5661517 YP_001500981.1 CDS Spea_1119 NC_009901.1 1356467 1358125 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: lpn:lpg1202 cytochrome D ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(1356467..1358125) Shewanella pealeana ATCC 700345 5661518 YP_001500982.1 CDS Spea_1120 NC_009901.1 1358352 1360235 R PFAM: protein of unknown function DUF885; KEGG: sbl:Sbal_3032 protein of unknown function DUF885; hypothetical protein complement(1358352..1360235) Shewanella pealeana ATCC 700345 5661519 YP_001500983.1 CDS Spea_1121 NC_009901.1 1360391 1361527 R KEGG: sfr:Sfri_2866 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase complement(1360391..1361527) Shewanella pealeana ATCC 700345 5661520 YP_001500984.1 CDS Spea_1122 NC_009901.1 1361527 1362126 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(1361527..1362126) Shewanella pealeana ATCC 700345 5661521 YP_001500985.1 CDS Spea_1123 NC_009901.1 1362253 1362687 R KEGG: slo:Shew_1133 hypothetical protein; hypothetical protein complement(1362253..1362687) Shewanella pealeana ATCC 700345 5661522 YP_001500986.1 CDS Spea_1124 NC_009901.1 1362771 1363043 R PFAM: protein of unknown function DUF167; KEGG: she:Shewmr4_1190 hypothetical protein; hypothetical protein complement(1362771..1363043) Shewanella pealeana ATCC 700345 5661523 YP_001500987.1 CDS Spea_1125 NC_009901.1 1363058 1363606 R PFAM: protein of unknown function YGGT; KEGG: slo:Shew_1135 protein of unknown function YGGT; hypothetical protein complement(1363058..1363606) Shewanella pealeana ATCC 700345 5661524 YP_001500988.1 CDS Spea_1126 NC_009901.1 1363642 1364460 R KEGG: sfr:Sfri_2861 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(1363642..1364460) Shewanella pealeana ATCC 700345 5661525 YP_001500989.1 CDS Spea_1127 NC_009901.1 1364663 1365364 R PFAM: alanine racemase domain protein; KEGG: shw:Sputw3181_1324 alanine racemase domain protein; alanine racemase domain-containing protein complement(1364663..1365364) Shewanella pealeana ATCC 700345 5661526 YP_001500990.1 CDS Spea_1128 NC_009901.1 1365400 1366437 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: slo:Shew_1138 twitching motility protein; twitching motility protein 1365400..1366437 Shewanella pealeana ATCC 700345 5661527 YP_001500991.1 CDS Spea_1129 NC_009901.1 1366461 1367573 D KEGG: shw:Sputw3181_1326 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1366461..1367573 Shewanella pealeana ATCC 700345 5661528 YP_001500992.1 CDS Spea_1130 NC_009901.1 1367696 1368709 D PFAM: ferrochelatase; KEGG: sfr:Sfri_2852 ferrochelatase; ferrochelatase 1367696..1368709 Shewanella pealeana ATCC 700345 5661529 YP_001500993.1 CDS Spea_1131 NC_009901.1 1368868 1369293 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1368868..1369293) Shewanella pealeana ATCC 700345 5661530 YP_001500994.1 CDS Spea_1132 NC_009901.1 1369332 1369904 R PFAM: protein of unknown function DUF179; KEGG: sfr:Sfri_2850 protein of unknown function DUF179; hypothetical protein complement(1369332..1369904) Shewanella pealeana ATCC 700345 5661531 YP_001500995.1 CDS Spea_1133 NC_009901.1 1369917 1370246 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1369917..1370246) Shewanella pealeana ATCC 700345 5661532 YP_001500996.1 CDS Spea_1134 NC_009901.1 1370648 1370980 R KEGG: sbl:Sbal_3017 hypothetical protein; hypothetical protein complement(1370648..1370980) Shewanella pealeana ATCC 700345 5661533 YP_001500997.1 CDS Spea_1135 NC_009901.1 1371140 1371697 D KEGG: slo:Shew_1147 hypothetical protein; hypothetical protein 1371140..1371697 Shewanella pealeana ATCC 700345 5661534 YP_001500998.1 CDS Spea_1136 NC_009901.1 1371822 1372700 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_0421 transcription regulator, LysR family; LysR family transcriptional regulator complement(1371822..1372700) Shewanella pealeana ATCC 700345 5661535 YP_001500999.1 CDS Spea_1137 NC_009901.1 1372784 1373197 D PFAM: transmembrane pair domain protein; KEGG: vha:VIBHAR_01850 hypothetical protein; transmembrane pair domain-containing protein 1372784..1373197 Shewanella pealeana ATCC 700345 5661536 YP_001501000.1 CDS Spea_1138 NC_009901.1 1373454 1375412 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2240 receptor, putative; TonB-dependent receptor plug 1373454..1375412 Shewanella pealeana ATCC 700345 5661537 YP_001501001.1 CDS Spea_1139 NC_009901.1 1375692 1376288 D PFAM: OmpA/MotB domain protein; KEGG: sbm:Shew185_3027 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1375692..1376288 Shewanella pealeana ATCC 700345 5661538 YP_001501002.1 CDS Spea_1140 NC_009901.1 1376318 1377142 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_1152 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1376318..1377142 Shewanella pealeana ATCC 700345 5661539 YP_001501003.1 CDS Spea_1141 NC_009901.1 1377216 1377854 R PFAM: protein of unknown function UPF0126; KEGG: sfr:Sfri_0596 protein of unknown function UPF0126; hypothetical protein complement(1377216..1377854) Shewanella pealeana ATCC 700345 5661540 YP_001501004.1 CDS Spea_1142 NC_009901.1 1378189 1379205 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbm:Shew185_3026 threonine aldolase; threonine aldolase 1378189..1379205 Shewanella pealeana ATCC 700345 5661541 YP_001501005.1 CDS Spea_1143 NC_009901.1 1379729 1380616 R KEGG: she:Shewmr4_3368 hypothetical protein; hypothetical protein complement(1379729..1380616) Shewanella pealeana ATCC 700345 5661542 YP_001501006.1 CDS Spea_1144 NC_009901.1 1380744 1382351 R PFAM: Alkaline phosphatase; KEGG: slo:Shew_1157 alkaline phosphatase; alkaline phosphatase complement(1380744..1382351) Shewanella pealeana ATCC 700345 5661543 YP_001501007.1 CDS Spea_1145 NC_009901.1 1382441 1383940 R PFAM: Alkaline phosphatase; KEGG: slo:Shew_1158 alkaline phosphatase; alkaline phosphatase complement(1382441..1383940) Shewanella pealeana ATCC 700345 5661544 YP_001501008.1 CDS Spea_1146 NC_009901.1 1384243 1384452 R KEGG: slo:Shew_1160 hypothetical protein; hypothetical protein complement(1384243..1384452) Shewanella pealeana ATCC 700345 5661545 YP_001501009.1 CDS Spea_1147 NC_009901.1 1385120 1385515 R KEGG: rme:Rmet_6285 hypothetical protein; hypothetical protein complement(1385120..1385515) Shewanella pealeana ATCC 700345 5661546 YP_001501010.1 CDS Spea_1148 NC_009901.1 1386127 1387428 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_1161 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1386127..1387428) Shewanella pealeana ATCC 700345 5661547 YP_001501011.1 CDS Spea_1149 NC_009901.1 1387838 1388200 R KEGG: slo:Shew_1162 hypothetical protein; hypothetical protein complement(1387838..1388200) Shewanella pealeana ATCC 700345 5661548 YP_001501012.1 CDS Spea_1150 NC_009901.1 1388659 1389813 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1163 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1388659..1389813 Shewanella pealeana ATCC 700345 5661549 YP_001501013.1 CDS Spea_1151 NC_009901.1 1390070 1393201 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1390070..1393201 Shewanella pealeana ATCC 700345 5661550 YP_001501014.1 CDS Spea_1152 NC_009901.1 1393696 1394844 R PFAM: iron-containing alcohol dehydrogenase; KEGG: slo:Shew_1166 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1393696..1394844) Shewanella pealeana ATCC 700345 5661551 YP_001501015.1 CDS Spea_1153 NC_009901.1 1394863 1395291 R hypothetical protein complement(1394863..1395291) Shewanella pealeana ATCC 700345 5661552 YP_001501016.1 CDS Spea_1154 NC_009901.1 1395486 1395959 R PFAM: protein of unknown function DUF88; KEGG: sbm:Shew185_3175 protein of unknown function DUF88; hypothetical protein complement(1395486..1395959) Shewanella pealeana ATCC 700345 5661553 YP_001501017.1 CDS Spea_1155 NC_009901.1 1396442 1399552 R PFAM: acriflavin resistance protein; KEGG: sbl:Sbal_3171 acriflavin resistance protein; acriflavin resistance protein complement(1396442..1399552) Shewanella pealeana ATCC 700345 5661554 YP_001501018.1 CDS Spea_1156 NC_009901.1 1399553 1400665 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1399553..1400665) Shewanella pealeana ATCC 700345 5661555 YP_001501019.1 CDS Spea_1157 NC_009901.1 1401104 1402186 R PFAM: metallophosphoesterase; KEGG: shn:Shewana3_1086 metallophosphoesterase; metallophosphoesterase complement(1401104..1402186) Shewanella pealeana ATCC 700345 5661556 YP_001501020.1 CDS Spea_1158 NC_009901.1 1402275 1403432 R PFAM: acyltransferase 3; KEGG: vvy:VVA1443 hypothetical protein; acyltransferase 3 complement(1402275..1403432) Shewanella pealeana ATCC 700345 5661557 YP_001501021.1 CDS Spea_1159 NC_009901.1 1403683 1405350 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1403683..1405350) Shewanella pealeana ATCC 700345 5661558 YP_001501022.1 CDS glyA NC_009901.1 1405628 1406884 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1405628..1406884 Shewanella pealeana ATCC 700345 5661559 YP_001501023.1 CDS nrdR NC_009901.1 1407071 1407520 D PFAM: ATP-cone domain protein; KEGG: slo:Shew_1186 ATP-cone domain protein; transcriptional regulator NrdR 1407071..1407520 Shewanella pealeana ATCC 700345 5661560 YP_001501024.1 CDS Spea_1162 NC_009901.1 1407589 1408710 D KEGG: she:Shewmr4_1096 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1407589..1408710 Shewanella pealeana ATCC 700345 5661561 YP_001501025.1 CDS Spea_1163 NC_009901.1 1408714 1409379 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1408714..1409379 Shewanella pealeana ATCC 700345 5661562 YP_001501026.1 CDS Spea_1164 NC_009901.1 1409517 1410620 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: slo:Shew_1189 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1409517..1410620 Shewanella pealeana ATCC 700345 5661563 YP_001501027.1 CDS ribH NC_009901.1 1410766 1411242 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1410766..1411242 Shewanella pealeana ATCC 700345 5661564 YP_001501028.1 CDS nusB NC_009901.1 1411257 1411664 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1411257..1411664 Shewanella pealeana ATCC 700345 5661565 YP_001501029.1 CDS Spea_1167 NC_009901.1 1411838 1412797 D KEGG: shw:Sputw3181_1239 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 1411838..1412797 Shewanella pealeana ATCC 700345 5661566 YP_001501030.1 CDS Spea_1168 NC_009901.1 1412797 1413291 D PFAM: phosphatidylglycerophosphatase A; KEGG: sbm:Shew185_3152 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 1412797..1413291 Shewanella pealeana ATCC 700345 5661567 YP_001501031.1 CDS Spea_1169 NC_009901.1 1413389 1415050 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: slo:Shew_1196 DNA repair protein RecN; recombination and repair protein complement(1413389..1415050) Shewanella pealeana ATCC 700345 5661568 YP_001501032.1 CDS Spea_1170 NC_009901.1 1416201 1417217 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(1416201..1417217) Shewanella pealeana ATCC 700345 5661569 YP_001501033.1 CDS Spea_1171 NC_009901.1 1417740 1420280 D PFAM: AAA-4 family protein; KEGG: bja:blr0871 hypothetical protein; putative transcriptional regulator 1417740..1420280 Shewanella pealeana ATCC 700345 5661570 YP_001501034.1 CDS Spea_1172 NC_009901.1 1421146 1421907 R PFAM: Pirin domain protein; KEGG: cps:CPS_1295 conserved hypothetical protein; pirin domain-containing protein complement(1421146..1421907) Shewanella pealeana ATCC 700345 5661571 YP_001501035.1 CDS Spea_1173 NC_009901.1 1422022 1423005 R KEGG: cps:CPS_1775 putative glutathione S-transferase; putative glutathione S-transferase complement(1422022..1423005) Shewanella pealeana ATCC 700345 5661572 YP_001501036.1 CDS Spea_1174 NC_009901.1 1423068 1423517 R PFAM: DoxX family protein; KEGG: pha:PSHAb0104 putative membrane DoxD-like family protein; DoxX family protein complement(1423068..1423517) Shewanella pealeana ATCC 700345 5661573 YP_001501037.1 CDS Spea_1175 NC_009901.1 1423734 1424648 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pha:PSHAb0105 putative transcriptional regulator (LysR family); LysR family transcriptional regulator 1423734..1424648 Shewanella pealeana ATCC 700345 5661574 YP_001501038.1 CDS Spea_1176 NC_009901.1 1424789 1426411 R PFAM: response regulator receiver; KEGG: vha:VIBHAR_06171 hypothetical protein; response regulator receiver protein complement(1424789..1426411) Shewanella pealeana ATCC 700345 5661575 YP_001501039.1 CDS Spea_1177 NC_009901.1 1426483 1428723 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: vha:VIBHAR_06169 hypothetical protein; Hpt sensor hybrid histidine kinase complement(1426483..1428723) Shewanella pealeana ATCC 700345 5661576 YP_001501040.1 CDS Spea_1178 NC_009901.1 1428958 1429860 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1428958..1429860 Shewanella pealeana ATCC 700345 5661577 YP_001501041.1 CDS Spea_1179 NC_009901.1 1429957 1430562 R PFAM: protein of unknown function DUF416; KEGG: slo:Shew_1199 protein of unknown function DUF416; hypothetical protein complement(1429957..1430562) Shewanella pealeana ATCC 700345 5661578 YP_001501042.1 CDS Spea_1180 NC_009901.1 1430564 1433353 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1430564..1433353) Shewanella pealeana ATCC 700345 5661579 YP_001501043.1 CDS rumA NC_009901.1 1433451 1434788 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1433451..1434788 Shewanella pealeana ATCC 700345 5661580 YP_001501044.1 CDS Spea_1182 NC_009901.1 1435005 1437212 D KEGG: slo:Shew_1202 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1435005..1437212 Shewanella pealeana ATCC 700345 5661581 YP_001501045.1 CDS mazG NC_009901.1 1437311 1438114 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1437311..1438114 Shewanella pealeana ATCC 700345 5661582 YP_001501046.1 CDS pyrG NC_009901.1 1438230 1439870 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1438230..1439870 Shewanella pealeana ATCC 700345 5661583 YP_001501047.1 CDS eno NC_009901.1 1439995 1441290 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1439995..1441290 Shewanella pealeana ATCC 700345 5661584 YP_001501048.1 CDS Spea_1186 NC_009901.1 1441381 1441677 D PFAM: Septum formation initiator; KEGG: slo:Shew_1206 septum formation initiator; septum formation initiator 1441381..1441677 Shewanella pealeana ATCC 700345 5661585 YP_001501049.1 CDS ispD NC_009901.1 1441729 1442424 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1441729..1442424 Shewanella pealeana ATCC 700345 5661586 YP_001501050.1 CDS ispF NC_009901.1 1442477 1442956 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1442477..1442956 Shewanella pealeana ATCC 700345 5661587 YP_001501051.1 CDS Spea_1189 NC_009901.1 1443055 1444119 D PFAM: tRNA pseudouridine synthase D TruD; KEGG: sbl:Sbal_3123 pseudouridylate synthase; tRNA pseudouridine synthase D TruD 1443055..1444119 Shewanella pealeana ATCC 700345 5661588 YP_001501052.1 CDS surE NC_009901.1 1444116 1444868 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1444116..1444868 Shewanella pealeana ATCC 700345 5661589 YP_001501053.1 CDS Spea_1191 NC_009901.1 1445346 1445981 D KEGG: sdn:Sden_1202 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1445346..1445981 Shewanella pealeana ATCC 700345 5661590 YP_001501054.1 CDS Spea_1192 NC_009901.1 1446069 1446959 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: slo:Shew_1212 peptidase M23B; peptidase M23B 1446069..1446959 Shewanella pealeana ATCC 700345 5661591 YP_001501055.1 CDS Spea_1193 NC_009901.1 1447036 1448004 D TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: slo:Shew_1213 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor 1447036..1448004 Shewanella pealeana ATCC 700345 5661592 YP_001501056.1 CDS Spea_1194 NC_009901.1 1448117 1450696 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1448117..1450696) Shewanella pealeana ATCC 700345 5661593 YP_001501057.1 CDS recA NC_009901.1 1451017 1452084 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1451017..1452084 Shewanella pealeana ATCC 700345 5661594 YP_001501058.1 CDS alaS NC_009901.1 1452516 1455143 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1452516..1455143 Shewanella pealeana ATCC 700345 5661595 YP_001501059.1 CDS Spea_1197 NC_009901.1 1455613 1455810 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1455613..1455810 Shewanella pealeana ATCC 700345 5661596 YP_001501060.1 CDS Spea_1198 NC_009901.1 1458872 1459117 D TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: sfr:Sfri_1065 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma 1458872..1459117 Shewanella pealeana ATCC 700345 5664703 YP_001501061.1 CDS Spea_1199 NC_009901.1 1459138 1460949 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1459138..1460949 Shewanella pealeana ATCC 700345 5661598 YP_001501062.1 CDS Spea_1200 NC_009901.1 1460958 1462088 D KEGG: sfr:Sfri_1067 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 1460958..1462088 Shewanella pealeana ATCC 700345 5661599 YP_001501063.1 CDS Spea_1201 NC_009901.1 1462229 1463170 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_1188 transcriptional regulator, LysR family; LysR family transcriptional regulator 1462229..1463170 Shewanella pealeana ATCC 700345 5661600 YP_001501064.1 CDS Spea_1202 NC_009901.1 1463402 1464508 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN2191 porphyromonas-type peptidyl-arginine deiminase; agmatine deiminase 1463402..1464508 Shewanella pealeana ATCC 700345 5661601 YP_001501065.1 CDS Spea_1203 NC_009901.1 1464553 1465638 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2900 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 1464553..1465638 Shewanella pealeana ATCC 700345 5661602 YP_001501066.1 CDS Spea_1204 NC_009901.1 1465721 1466593 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vpa:VP1774 putative carbon-nitrogen hydrolase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1465721..1466593 Shewanella pealeana ATCC 700345 5661603 YP_001501067.1 CDS Spea_1205 NC_009901.1 1466713 1466898 R KEGG: slo:Shew_1223 hypothetical protein; hypothetical protein complement(1466713..1466898) Shewanella pealeana ATCC 700345 5661604 YP_001501068.1 CDS Spea_1206 NC_009901.1 1467001 1468251 R PFAM: sodium:dicarboxylate symporter; KEGG: slo:Shew_1224 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1467001..1468251) Shewanella pealeana ATCC 700345 5661605 YP_001501069.1 CDS Spea_1207 NC_009901.1 1468994 1471831 D PFAM: peptidase M16 domain protein; KEGG: slo:Shew_1226 peptidase M16 domain protein; peptidase M16 domain-containing protein 1468994..1471831 Shewanella pealeana ATCC 700345 5661606 YP_001501070.1 CDS Spea_1208 NC_009901.1 1472008 1473576 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1472008..1473576 Shewanella pealeana ATCC 700345 5661607 YP_001501071.1 CDS Spea_1209 NC_009901.1 1473579 1474019 D KEGG: son:SO_3558 hypothetical protein; hypothetical protein 1473579..1474019 Shewanella pealeana ATCC 700345 5661608 YP_001501072.1 CDS Spea_1210 NC_009901.1 1474143 1474760 D KEGG: slo:Shew_1229 hypothetical protein; hypothetical protein 1474143..1474760 Shewanella pealeana ATCC 700345 5661609 YP_001501073.1 CDS Spea_1211 NC_009901.1 1475309 1475812 D KEGG: slo:Shew_1230 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1475309..1475812 Shewanella pealeana ATCC 700345 5661610 YP_001501074.1 CDS Spea_1212 NC_009901.1 1475962 1476579 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: sbl:Sbal_1039 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1475962..1476579 Shewanella pealeana ATCC 700345 5661611 YP_001501075.1 CDS Spea_1213 NC_009901.1 1476569 1477135 D KEGG: slo:Shew_1232 hypothetical protein; hypothetical protein 1476569..1477135 Shewanella pealeana ATCC 700345 5661612 YP_001501076.1 CDS Spea_1214 NC_009901.1 1477295 1477711 R KEGG: shn:Shewana3_2001 hypothetical protein; hypothetical protein complement(1477295..1477711) Shewanella pealeana ATCC 700345 5661613 YP_001501077.1 CDS Spea_1215 NC_009901.1 1477930 1481208 D PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: slo:Shew_1234 peptidase S41; peptidase S41 1477930..1481208 Shewanella pealeana ATCC 700345 5661614 YP_001501078.1 CDS Spea_1216 NC_009901.1 1481454 1482605 D PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1792 hypothetical secretion protein; secretion protein HlyD family protein 1481454..1482605 Shewanella pealeana ATCC 700345 5661615 YP_001501079.1 CDS Spea_1217 NC_009901.1 1482595 1483665 D KEGG: ppr:PBPRB1793 hypothetical protein; hypothetical protein 1482595..1483665 Shewanella pealeana ATCC 700345 5661616 YP_001501080.1 CDS Spea_1218 NC_009901.1 1483957 1484541 D KEGG: slo:Shew_2686 putative lipoprotein; putative lipoprotein 1483957..1484541 Shewanella pealeana ATCC 700345 5661617 YP_001501081.1 CDS Spea_1219 NC_009901.1 1484621 1485064 R PFAM: OsmC family protein; KEGG: sbm:Shew185_1278 OsmC family protein; OsmC family protein complement(1484621..1485064) Shewanella pealeana ATCC 700345 5661618 YP_001501082.1 CDS Spea_1220 NC_009901.1 1485341 1485868 R KEGG: sbl:Sbal_1233 hypothetical protein; hypothetical protein complement(1485341..1485868) Shewanella pealeana ATCC 700345 5661619 YP_001501083.1 CDS Spea_1221 NC_009901.1 1486118 1486444 R KEGG: sbm:Shew185_1279 hypothetical protein; hypothetical protein complement(1486118..1486444) Shewanella pealeana ATCC 700345 5661620 YP_001501084.1 CDS Spea_1222 NC_009901.1 1486448 1488091 R PFAM: PepSY-associated TM helix domain protein; KEGG: spc:Sputcn32_2728 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(1486448..1488091) Shewanella pealeana ATCC 700345 5661621 YP_001501085.1 CDS Spea_1223 NC_009901.1 1488095 1488406 R KEGG: sbl:Sbal_0110 hypothetical protein; hypothetical protein complement(1488095..1488406) Shewanella pealeana ATCC 700345 5661622 YP_001501086.1 CDS Spea_1224 NC_009901.1 1488993 1489349 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: slo:Shew_1241 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 1488993..1489349 Shewanella pealeana ATCC 700345 5661623 YP_001501087.1 CDS Spea_1225 NC_009901.1 1489454 1491382 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vha:VIBHAR_05273 hypothetical protein; potassium efflux system protein complement(1489454..1491382) Shewanella pealeana ATCC 700345 5661624 YP_001501088.1 CDS Spea_1226 NC_009901.1 1491385 1492005 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: vpa:VPA0465 putative NAD(P)H oxidoreductase; NAD(P)H dehydrogenase (quinone) complement(1491385..1492005) Shewanella pealeana ATCC 700345 5661625 YP_001501089.1 CDS Spea_1227 NC_009901.1 1492366 1493577 D PFAM: NnrS family protein; KEGG: shw:Sputw3181_3742 NnrS family protein; NnrS family protein 1492366..1493577 Shewanella pealeana ATCC 700345 5661626 YP_001501090.1 CDS Spea_1228 NC_009901.1 1493670 1495079 D PFAM: cytochrome c552; KEGG: slo:Shew_0505 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 1493670..1495079 Shewanella pealeana ATCC 700345 5661627 YP_001501091.1 CDS Spea_1229 NC_009901.1 1495344 1495832 D hypothetical protein 1495344..1495832 Shewanella pealeana ATCC 700345 5661628 YP_001501092.1 CDS Spea_1230 NC_009901.1 1495878 1496930 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_0202 transcriptional regulator, AraC family; AraC family transcriptional regulator 1495878..1496930 Shewanella pealeana ATCC 700345 5661629 YP_001501093.1 CDS Spea_1231 NC_009901.1 1497064 1499076 D PFAM: beta-lactamase domain protein; KEGG: pfo:Pfl_2280 beta-lactamase-like; beta-lactamase domain-containing protein 1497064..1499076 Shewanella pealeana ATCC 700345 5661630 YP_001501094.1 CDS Spea_1232 NC_009901.1 1499742 1500542 R hypothetical protein complement(1499742..1500542) Shewanella pealeana ATCC 700345 5661631 YP_001501095.1 CDS Spea_1233 NC_009901.1 1500535 1501386 R KEGG: mul:MUL_0516 hypothetical protein; hypothetical protein complement(1500535..1501386) Shewanella pealeana ATCC 700345 5661632 YP_001501096.1 CDS fadE NC_009901.1 1502313 1504550 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1502313..1504550) Shewanella pealeana ATCC 700345 5661633 YP_001501097.1 CDS Spea_1235 NC_009901.1 1504994 1506181 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1504994..1506181) Shewanella pealeana ATCC 700345 5661634 YP_001501098.1 CDS Spea_1236 NC_009901.1 1506793 1507320 R KEGG: cps:CPS_3362 putative lipoprotein; putative lipoprotein complement(1506793..1507320) Shewanella pealeana ATCC 700345 5661635 YP_001501099.1 CDS Spea_1237 NC_009901.1 1507332 1509491 R KEGG: vfi:VFA0120 hypothetical cytosolic protein; hypothetical protein complement(1507332..1509491) Shewanella pealeana ATCC 700345 5661636 YP_001501100.1 CDS Spea_1238 NC_009901.1 1509927 1511111 D PFAM: glycosyl transferase group 1; KEGG: drm:Dred_2323 glycosyl transferase, group 1; group 1 glycosyl transferase 1509927..1511111 Shewanella pealeana ATCC 700345 5661637 YP_001501101.1 CDS Spea_1239 NC_009901.1 1511101 1513311 D PFAM: extracellular solute-binding protein family 3; sodium:dicarboxylate symporter; KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 1511101..1513311 Shewanella pealeana ATCC 700345 5661638 YP_001501102.1 CDS Spea_1240 NC_009901.1 1513360 1514181 D KEGG: rde:RD1_0117 hypothetical protein; hypothetical protein 1513360..1514181 Shewanella pealeana ATCC 700345 5661639 YP_001501103.1 CDS Spea_1241 NC_009901.1 1514218 1515216 R KEGG: cps:CPS_1463 hypothetical protein; hypothetical protein complement(1514218..1515216) Shewanella pealeana ATCC 700345 5661640 YP_001501104.1 CDS Spea_1242 NC_009901.1 1515607 1516335 D hypothetical protein 1515607..1516335 Shewanella pealeana ATCC 700345 5661641 YP_001501105.1 CDS Spea_1243 NC_009901.1 1516340 1517866 D PFAM: EAL domain protein; KEGG: ppr:PBPRB0827 hypothetical protein; diguanylate phosphodiesterase 1516340..1517866 Shewanella pealeana ATCC 700345 5661642 YP_001501106.1 CDS Spea_1244 NC_009901.1 1518035 1518595 R PFAM: CBS domain containing protein; KEGG: cps:CPS_1349 CBS domain protein; hypothetical protein complement(1518035..1518595) Shewanella pealeana ATCC 700345 5661643 YP_001501107.1 CDS Spea_1245 NC_009901.1 1518901 1519629 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 1518901..1519629 Shewanella pealeana ATCC 700345 5661644 YP_001501108.1 CDS Spea_1246 NC_009901.1 1519846 1520373 D PFAM: PEBP family protein; KEGG: vfi:VFA0932 putative phospholipid-binding protein; PEBP family protein 1519846..1520373 Shewanella pealeana ATCC 700345 5661645 YP_001501109.1 CDS Spea_1247 NC_009901.1 1520438 1521247 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vfi:VFA0931 transcriptional regulatory, AraC-like; AraC family transcriptional regulator 1520438..1521247 Shewanella pealeana ATCC 700345 5661646 YP_001501110.1 CDS Spea_1248 NC_009901.1 1522011 1522352 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: slo:Shew_1931 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 1522011..1522352 Shewanella pealeana ATCC 700345 5661647 YP_001501111.1 CDS Spea_1249 NC_009901.1 1522829 1523641 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shm:Shewmr7_0453 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1522829..1523641) Shewanella pealeana ATCC 700345 5661648 YP_001501112.1 CDS Spea_1250 NC_009901.1 1523743 1524276 D TIGRFAM: alkylhydroperoxidase-like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: she:Shewmr4_3500 alkylhydroperoxidase-like protein, AhpD family; alkylhydroperoxidase 1523743..1524276 Shewanella pealeana ATCC 700345 5661649 YP_001501113.1 CDS Spea_1251 NC_009901.1 1524295 1524732 D PFAM: protein of unknown function DUF417; KEGG: aha:AHA_4046 MC21 protein; hypothetical protein 1524295..1524732 Shewanella pealeana ATCC 700345 5661650 YP_001501114.1 CDS Spea_1252 NC_009901.1 1524818 1525516 R KEGG: slo:Shew_1250 hypothetical protein; hypothetical protein complement(1524818..1525516) Shewanella pealeana ATCC 700345 5661651 YP_001501115.1 CDS Spea_1253 NC_009901.1 1525654 1527147 D KEGG: slo:Shew_1251 hypothetical protein; hypothetical protein 1525654..1527147 Shewanella pealeana ATCC 700345 5661652 YP_001501116.1 CDS Spea_1254 NC_009901.1 1527312 1527938 D KEGG: slo:Shew_1252 transposase; transposase 1527312..1527938 Shewanella pealeana ATCC 700345 5661653 YP_001501117.1 CDS Spea_1255 NC_009901.1 1527993 1528553 R PFAM: integrase family protein; KEGG: slo:Shew_1254 phage integrase family protein; integrase family protein complement(1527993..1528553) Shewanella pealeana ATCC 700345 5661654 YP_001501118.1 CDS Spea_1256 NC_009901.1 1528687 1529100 R KEGG: shm:Shewmr7_1773 hypothetical protein; hypothetical protein complement(1528687..1529100) Shewanella pealeana ATCC 700345 5661655 YP_001501119.1 CDS Spea_1257 NC_009901.1 1529279 1529620 R PFAM: YagBYeeUYfjZ family protein; KEGG: shn:Shewana3_1802 YagBYeeUYfjZ family protein; hypothetical protein complement(1529279..1529620) Shewanella pealeana ATCC 700345 5661656 YP_001501120.1 CDS Spea_1258 NC_009901.1 1529734 1530096 R KEGG: shm:Shewmr7_1775 hypothetical protein; hypothetical protein complement(1529734..1530096) Shewanella pealeana ATCC 700345 5661657 YP_001501121.1 CDS Spea_1259 NC_009901.1 1530156 1530632 R PFAM: DNA repair protein RadC; KEGG: shm:Shewmr7_1776 DNA repair protein RadC; DNA repair protein RadC complement(1530156..1530632) Shewanella pealeana ATCC 700345 5661658 YP_001501122.1 CDS Spea_1260 NC_009901.1 1530827 1531030 D PFAM: Prophage CP4-57 regulatory; KEGG: shm:Shewmr7_1777 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 1530827..1531030 Shewanella pealeana ATCC 700345 5661659 YP_001501123.1 CDS Spea_1261 NC_009901.1 1531543 1531761 R hypothetical protein complement(1531543..1531761) Shewanella pealeana ATCC 700345 5661660 YP_001501124.1 CDS Spea_1262 NC_009901.1 1532360 1533223 R KEGG: vvy:VV2215 hypothetical protein; hypothetical protein complement(1532360..1533223) Shewanella pealeana ATCC 700345 5661661 YP_001501125.1 CDS Spea_1263 NC_009901.1 1533379 1534656 D KEGG: ajs:Ajs_3602 hypothetical protein; hypothetical protein 1533379..1534656 Shewanella pealeana ATCC 700345 5661662 YP_001501126.1 CDS Spea_1264 NC_009901.1 1534646 1535215 D KEGG: ajs:Ajs_3601 hypothetical protein; hypothetical protein 1534646..1535215 Shewanella pealeana ATCC 700345 5661663 YP_001501127.1 CDS Spea_1265 NC_009901.1 1535209 1538001 D KEGG: pna:Pnap_4443 hypothetical protein; hypothetical protein 1535209..1538001 Shewanella pealeana ATCC 700345 5661664 YP_001501128.1 CDS Spea_1266 NC_009901.1 1537998 1538876 D KEGG: pna:Pnap_4444 hypothetical protein; hypothetical protein 1537998..1538876 Shewanella pealeana ATCC 700345 5661665 YP_001501129.1 CDS Spea_1267 NC_009901.1 1539298 1540548 D KEGG: vvy:VV2212 hypothetical protein; hypothetical protein 1539298..1540548 Shewanella pealeana ATCC 700345 5661666 YP_001501130.1 CDS Spea_1268 NC_009901.1 1540535 1542358 D KEGG: vvy:VV2211 hypothetical protein; hypothetical protein 1540535..1542358 Shewanella pealeana ATCC 700345 5661667 YP_001501131.1 CDS Spea_1269 NC_009901.1 1542400 1545645 D PFAM: helicase domain protein; KEGG: vvy:VV2210 hypothetical protein; helicase domain-containing protein 1542400..1545645 Shewanella pealeana ATCC 700345 5661668 YP_001501132.1 CDS Spea_1270 NC_009901.1 1546309 1547529 D KEGG: sfu:Sfum_1322 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1546309..1547529 Shewanella pealeana ATCC 700345 5661669 YP_001501133.1 CDS Spea_1271 NC_009901.1 1547568 1551101 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: ava:Ava_1325 SNF2-related helicase; helicase domain-containing protein 1547568..1551101 Shewanella pealeana ATCC 700345 5661670 YP_001501134.1 CDS Spea_1272 NC_009901.1 1551112 1555173 D KEGG: ava:Ava_C0223 hypothetical protein; hypothetical protein 1551112..1555173 Shewanella pealeana ATCC 700345 5661671 YP_001501135.1 CDS Spea_1273 NC_009901.1 1555239 1558805 D PFAM: helicase domain protein; KEGG: sth:STH1306 putative DNA helicase; helicase domain-containing protein 1555239..1558805 Shewanella pealeana ATCC 700345 5661672 YP_001501136.1 CDS Spea_1274 NC_009901.1 1558802 1560625 D KEGG: sth:STH1305 hypothetical protein; hypothetical protein 1558802..1560625 Shewanella pealeana ATCC 700345 5661673 YP_001501137.1 CDS Spea_1275 NC_009901.1 1560622 1561461 D KEGG: sth:STH1304 hypothetical protein; hypothetical protein 1560622..1561461 Shewanella pealeana ATCC 700345 5661674 YP_001501138.1 CDS Spea_1276 NC_009901.1 1561552 1562637 D KEGG: ecj:JW2611 hypothetical protein; hypothetical protein 1561552..1562637 Shewanella pealeana ATCC 700345 5661675 YP_001501139.1 CDS Spea_1277 NC_009901.1 1562630 1563025 D KEGG: ecj:JW5418 hypothetical protein; hypothetical protein 1562630..1563025 Shewanella pealeana ATCC 700345 5661676 YP_001501140.1 CDS Spea_1278 NC_009901.1 1563144 1563494 R KEGG: spc:Sputcn32_2917 hypothetical protein; hypothetical protein complement(1563144..1563494) Shewanella pealeana ATCC 700345 5661677 YP_001501141.1 CDS Spea_1279 NC_009901.1 1563727 1564083 R PFAM: helix-turn-helix domain protein; KEGG: slo:Shew_1266 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1563727..1564083) Shewanella pealeana ATCC 700345 5661678 YP_001501142.1 CDS Spea_1280 NC_009901.1 1564202 1564696 D KEGG: slo:Shew_1265 hypothetical protein; hypothetical protein 1564202..1564696 Shewanella pealeana ATCC 700345 5661679 YP_001501143.1 CDS Spea_1281 NC_009901.1 1564741 1565973 R PFAM: integrase family protein; KEGG: vvy:VV0817 phage integrase; integrase family protein complement(1564741..1565973) Shewanella pealeana ATCC 700345 5661680 YP_001501144.1 CDS smpB NC_009901.1 1566605 1567099 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1566605..1567099) Shewanella pealeana ATCC 700345 5664704 YP_001501145.1 CDS Spea_1283 NC_009901.1 1567293 1567724 D PFAM: cyclase/dehydrase; KEGG: slo:Shew_1269 cyclase/dehydrase; cyclase/dehydrase 1567293..1567724 Shewanella pealeana ATCC 700345 5661682 YP_001501146.1 CDS Spea_1284 NC_009901.1 1567721 1568053 D PFAM: protein of unknown function UPF0125; KEGG: sbm:Shew185_1300 protein of unknown function UPF0125; hypothetical protein 1567721..1568053 Shewanella pealeana ATCC 700345 5661683 YP_001501147.1 CDS Spea_1285 NC_009901.1 1568161 1568655 R PFAM: SmpA/OmlA domain protein; KEGG: slo:Shew_1271 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein complement(1568161..1568655) Shewanella pealeana ATCC 700345 5661684 YP_001501148.1 CDS Spea_1286 NC_009901.1 1569121 1569924 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: slo:Shew_1272 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1569121..1569924 Shewanella pealeana ATCC 700345 5661685 YP_001501149.1 CDS Spea_1287 NC_009901.1 1570060 1570224 D KEGG: son:SO_1479 hypothetical protein; hypothetical protein 1570060..1570224 Shewanella pealeana ATCC 700345 5661686 YP_001501150.1 CDS Spea_1288 NC_009901.1 1570480 1570692 D KEGG: saz:Sama_2383 hypothetical protein; hypothetical protein 1570480..1570692 Shewanella pealeana ATCC 700345 5661687 YP_001501151.1 CDS Spea_1289 NC_009901.1 1570703 1572490 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO_1480 GGDEF family protein; diguanylate cyclase 1570703..1572490 Shewanella pealeana ATCC 700345 5661688 YP_001501152.1 CDS Spea_1290 NC_009901.1 1573642 1575306 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1573642..1575306 Shewanella pealeana ATCC 700345 5661689 YP_001501153.1 CDS Spea_1291 NC_009901.1 1575736 1577211 D PFAM: Metal-dependent hydrolase HDOD; KEGG: slo:Shew_1277 putative signal transduction protein; putative signal transduction protein 1575736..1577211 Shewanella pealeana ATCC 700345 5661690 YP_001501154.1 CDS Spea_1292 NC_009901.1 1577264 1577749 R KEGG: sbl:Sbal_3009 hypothetical protein; hypothetical protein complement(1577264..1577749) Shewanella pealeana ATCC 700345 5661691 YP_001501155.1 CDS Spea_1293 NC_009901.1 1577807 1578631 R PFAM: protein of unknown function DUF980; KEGG: son:SO_3335 hypothetical protein; hypothetical protein complement(1577807..1578631) Shewanella pealeana ATCC 700345 5661692 YP_001501156.1 CDS Spea_1294 NC_009901.1 1578876 1579319 R KEGG: slo:Shew_1280 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(1578876..1579319) Shewanella pealeana ATCC 700345 5661693 YP_001501157.1 CDS Spea_1295 NC_009901.1 1579279 1580022 R KEGG: slo:Shew_1281 hypothetical protein; hypothetical protein complement(1579279..1580022) Shewanella pealeana ATCC 700345 5661694 YP_001501158.1 CDS Spea_1296 NC_009901.1 1580588 1580812 D KEGG: slo:Shew_1282 hypothetical protein; hypothetical protein 1580588..1580812 Shewanella pealeana ATCC 700345 5661695 YP_001501159.1 CDS Spea_1297 NC_009901.1 1581020 1581322 D KEGG: slo:Shew_1283 NrfJ-related protein; NrfJ-like protein 1581020..1581322 Shewanella pealeana ATCC 700345 5661696 YP_001501160.1 CDS Spea_1298 NC_009901.1 1581503 1582003 D PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_1284 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1581503..1582003 Shewanella pealeana ATCC 700345 5661697 YP_001501161.1 CDS Spea_1299 NC_009901.1 1582088 1582630 D PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_3014 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1582088..1582630 Shewanella pealeana ATCC 700345 5661698 YP_001501162.1 CDS Spea_1300 NC_009901.1 1582695 1584473 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: slo:Shew_1285 5'-nucleotidase; 5'-nucleotidase complement(1582695..1584473) Shewanella pealeana ATCC 700345 5661699 YP_001501163.1 CDS Spea_1301 NC_009901.1 1584981 1586051 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: sbm:Shew185_3009 protein of unknown function DUF21; hypothetical protein complement(1584981..1586051) Shewanella pealeana ATCC 700345 5661700 YP_001501164.1 CDS Spea_1302 NC_009901.1 1586212 1587333 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1586212..1587333 Shewanella pealeana ATCC 700345 5661701 YP_001501165.1 CDS Spea_1303 NC_009901.1 1587365 1588165 D KEGG: slo:Shew_1288 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1587365..1588165 Shewanella pealeana ATCC 700345 5661702 YP_001501166.1 CDS Spea_1304 NC_009901.1 1588165 1589130 D KEGG: saz:Sama_2366 hypothetical protein; hypothetical protein 1588165..1589130 Shewanella pealeana ATCC 700345 5661703 YP_001501167.1 CDS ispG NC_009901.1 1589152 1590267 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1589152..1590267 Shewanella pealeana ATCC 700345 5661704 YP_001501168.1 CDS hisS NC_009901.1 1590407 1591681 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1590407..1591681 Shewanella pealeana ATCC 700345 5661705 YP_001501169.1 CDS Spea_1307 NC_009901.1 1591696 1592316 D KEGG: slo:Shew_1292 tetratricopeptide TPR_4; hypothetical protein 1591696..1592316 Shewanella pealeana ATCC 700345 5661706 YP_001501170.1 CDS Spea_1308 NC_009901.1 1592328 1593515 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1592328..1593515 Shewanella pealeana ATCC 700345 5661707 YP_001501171.1 CDS engA NC_009901.1 1593602 1595074 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1593602..1595074 Shewanella pealeana ATCC 700345 5661708 YP_001501172.1 CDS Spea_1310 NC_009901.1 1595153 1595872 R hypothetical protein complement(1595153..1595872) Shewanella pealeana ATCC 700345 5661709 YP_001501173.1 CDS Spea_1311 NC_009901.1 1596103 1597005 R hypothetical protein complement(1596103..1597005) Shewanella pealeana ATCC 700345 5661710 YP_001501174.1 CDS xseA NC_009901.1 1597820 1599157 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1597820..1599157) Shewanella pealeana ATCC 700345 5661711 YP_001501175.1 CDS Spea_1313 NC_009901.1 1599278 1600750 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1599278..1600750 Shewanella pealeana ATCC 700345 5661712 YP_001501176.1 CDS guaA NC_009901.1 1600874 1602451 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1600874..1602451 Shewanella pealeana ATCC 700345 5661713 YP_001501177.1 CDS Spea_1315 NC_009901.1 1602580 1603071 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: shm:Shewmr7_1307 CMP/dCMP deaminase, zinc-binding protein; zinc-binding CMP/dCMP deaminase 1602580..1603071 Shewanella pealeana ATCC 700345 5661714 YP_001501178.1 CDS Spea_1316 NC_009901.1 1603486 1604925 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1603486..1604925) Shewanella pealeana ATCC 700345 5661715 YP_001501179.1 CDS Spea_1317 NC_009901.1 1605218 1609099 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1605218..1609099 Shewanella pealeana ATCC 700345 5661716 YP_001501180.1 CDS Spea_1318 NC_009901.1 1610325 1611881 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: slo:Shew_1302 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1610325..1611881 Shewanella pealeana ATCC 700345 5661717 YP_001501181.1 CDS Spea_1319 NC_009901.1 1611897 1613036 D KEGG: slo:Shew_1303 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1611897..1613036 Shewanella pealeana ATCC 700345 5661718 YP_001501182.1 CDS Spea_1320 NC_009901.1 1613052 1613168 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: slo:Shew_1304 cyd operon protein YbgT; cyd operon protein YbgT 1613052..1613168 Shewanella pealeana ATCC 700345 5661719 YP_001501183.1 CDS Spea_1321 NC_009901.1 1613671 1614243 R hypothetical protein complement(1613671..1614243) Shewanella pealeana ATCC 700345 5661720 YP_001501184.1 CDS Spea_1322 NC_009901.1 1614466 1616469 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_1310 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1614466..1616469) Shewanella pealeana ATCC 700345 5661721 YP_001501185.1 CDS Spea_1323 NC_009901.1 1616760 1617014 D PFAM: protein of unknown function DUF465; KEGG: saz:Sama_2344 hypothetical protein; hypothetical protein 1616760..1617014 Shewanella pealeana ATCC 700345 5661722 YP_001501186.1 CDS Spea_1324 NC_009901.1 1616998 1620114 R PFAM: acriflavin resistance protein; KEGG: slo:Shew_1311 acriflavin resistance protein; acriflavin resistance protein complement(1616998..1620114) Shewanella pealeana ATCC 700345 5661723 YP_001501187.1 CDS Spea_1325 NC_009901.1 1620120 1621232 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_1312 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1620120..1621232) Shewanella pealeana ATCC 700345 5661724 YP_001501188.1 CDS Spea_1326 NC_009901.1 1621419 1622036 D PFAM: regulatory protein TetR; KEGG: slo:Shew_1313 transcriptional regulator, TetR family; TetR family transcriptional regulator 1621419..1622036 Shewanella pealeana ATCC 700345 5661725 YP_001501189.1 CDS Spea_1327 NC_009901.1 1622099 1622674 R KEGG: sbm:Shew185_2984 hypothetical protein; hypothetical protein complement(1622099..1622674) Shewanella pealeana ATCC 700345 5661726 YP_001501190.1 CDS Spea_1328 NC_009901.1 1622706 1623185 R KEGG: slo:Shew_1316 hypothetical protein; hypothetical protein complement(1622706..1623185) Shewanella pealeana ATCC 700345 5661727 YP_001501191.1 CDS Spea_1329 NC_009901.1 1623485 1624237 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pin:Ping_2637 methyltransferase type 12; type 11 methyltransferase 1623485..1624237 Shewanella pealeana ATCC 700345 5661728 YP_001501192.1 CDS Spea_1330 NC_009901.1 1624590 1625843 D PFAM: sodium:dicarboxylate symporter; KEGG: vfi:VF0647 proton/sodium-glutamate symport protein; sodium:dicarboxylate symporter 1624590..1625843 Shewanella pealeana ATCC 700345 5661729 YP_001501193.1 CDS Spea_1331 NC_009901.1 1625951 1626781 R PFAM: fatty acid hydroxylase; KEGG: eli:ELI_07660 hypothetical protein; fatty acid hydroxylase complement(1625951..1626781) Shewanella pealeana ATCC 700345 5661730 YP_001501194.1 CDS Spea_1332 NC_009901.1 1627615 1628784 R KEGG: slo:Shew_1337 hypothetical protein; hypothetical protein complement(1627615..1628784) Shewanella pealeana ATCC 700345 5664705 YP_001501195.1 CDS Spea_1333 NC_009901.1 1629092 1629721 D KEGG: shw:Sputw3181_1399 hypothetical protein; hypothetical protein 1629092..1629721 Shewanella pealeana ATCC 700345 5661732 YP_001501196.1 CDS Spea_1334 NC_009901.1 1629722 1630168 D PFAM: protein of unknown function DUF400; KEGG: slo:Shew_1339 protein of unknown function DUF400; hypothetical protein 1629722..1630168 Shewanella pealeana ATCC 700345 5661733 YP_001501197.1 CDS Spea_1335 NC_009901.1 1630556 1630981 R PFAM: FlgN family protein; KEGG: slo:Shew_1340 FlgN family protein; FlgN family protein complement(1630556..1630981) Shewanella pealeana ATCC 700345 5661734 YP_001501198.1 CDS Spea_1336 NC_009901.1 1631078 1631395 R PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: slo:Shew_1341 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM complement(1631078..1631395) Shewanella pealeana ATCC 700345 5661735 YP_001501199.1 CDS flgA NC_009901.1 1631493 1632266 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1631493..1632266) Shewanella pealeana ATCC 700345 5661736 YP_001501200.1 CDS Spea_1338 NC_009901.1 1632477 1633397 D PFAM: response regulator receiver; CheW domain protein; KEGG: shw:Sputw3181_1404 putative CheW protein; response regulator receiver modulated CheW protein 1632477..1633397 Shewanella pealeana ATCC 700345 5661737 YP_001501201.1 CDS Spea_1339 NC_009901.1 1633537 1634370 D PFAM: MCP methyltransferase CheR-type; KEGG: shn:Shewana3_1320 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 1633537..1634370 Shewanella pealeana ATCC 700345 5661738 YP_001501202.1 CDS flgB NC_009901.1 1634536 1634934 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1634536..1634934 Shewanella pealeana ATCC 700345 5661739 YP_001501203.1 CDS flgC NC_009901.1 1634937 1635353 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1634937..1635353 Shewanella pealeana ATCC 700345 5661740 YP_001501204.1 CDS flgD NC_009901.1 1635379 1636191 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1635379..1636191 Shewanella pealeana ATCC 700345 5661741 YP_001501205.1 CDS flgE NC_009901.1 1636277 1637638 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1636277..1637638 Shewanella pealeana ATCC 700345 5661742 YP_001501206.1 CDS flgF NC_009901.1 1638295 1639038 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1638295..1639038 Shewanella pealeana ATCC 700345 5661743 YP_001501207.1 CDS flgG NC_009901.1 1639049 1639837 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1639049..1639837 Shewanella pealeana ATCC 700345 5661744 YP_001501208.1 CDS flgH NC_009901.1 1639881 1640534 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1639881..1640534 Shewanella pealeana ATCC 700345 5661745 YP_001501209.1 CDS flgI NC_009901.1 1640574 1641668 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1640574..1641668 Shewanella pealeana ATCC 700345 5661746 YP_001501210.1 CDS flgJ NC_009901.1 1641697 1642788 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1641697..1642788 Shewanella pealeana ATCC 700345 5661747 YP_001501211.1 CDS Spea_1349 NC_009901.1 1642832 1644754 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: slo:Shew_1354 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 1642832..1644754 Shewanella pealeana ATCC 700345 5661748 YP_001501212.1 CDS flgL NC_009901.1 1644839 1646041 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1644839..1646041 Shewanella pealeana ATCC 700345 5661749 YP_001501213.1 CDS Spea_1351 NC_009901.1 1646348 1647532 D PFAM: flagellin domain protein; KEGG: she:Shewmr4_1273 flagellin domain protein; flagellin domain-containing protein 1646348..1647532 Shewanella pealeana ATCC 700345 5661750 YP_001501214.1 CDS Spea_1352 NC_009901.1 1648279 1649460 D PFAM: flagellin domain protein; KEGG: she:Shewmr4_1273 flagellin domain protein; flagellin domain-containing protein 1648279..1649460 Shewanella pealeana ATCC 700345 5661751 YP_001501215.1 CDS Spea_1353 NC_009901.1 1649673 1650146 D PFAM: flagellar protein FlaG protein; KEGG: shn:Shewana3_1334 flagellar protein FlaG protein; flagellar protein FlaG protein 1649673..1650146 Shewanella pealeana ATCC 700345 5661752 YP_001501216.1 CDS Spea_1354 NC_009901.1 1650241 1651602 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: sfr:Sfri_1175 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein 1650241..1651602 Shewanella pealeana ATCC 700345 5661753 YP_001501217.1 CDS Spea_1355 NC_009901.1 1651749 1652126 D KEGG: spc:Sputcn32_2582 hypothetical protein; hypothetical protein 1651749..1652126 Shewanella pealeana ATCC 700345 5661754 YP_001501218.1 CDS fliS NC_009901.1 1652133 1652534 D flagellin specific chaperone; flagellar protein FliS 1652133..1652534 Shewanella pealeana ATCC 700345 5661755 YP_001501219.1 CDS Spea_1357 NC_009901.1 1652848 1654281 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: slo:Shew_1362 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1652848..1654281 Shewanella pealeana ATCC 700345 5661756 YP_001501220.1 CDS Spea_1358 NC_009901.1 1654839 1655954 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: sbm:Shew185_2939 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 1654839..1655954 Shewanella pealeana ATCC 700345 5661757 YP_001501221.1 CDS Spea_1359 NC_009901.1 1655947 1657299 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: sfr:Sfri_1180 two component, sigma54 specific, transcriptional regulator, fis family protein; Fis family two component sigma54 specific transcriptional regulator 1655947..1657299 Shewanella pealeana ATCC 700345 5661758 YP_001501222.1 CDS Spea_1360 NC_009901.1 1657813 1658145 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sfr:Sfri_1181 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 1657813..1658145 Shewanella pealeana ATCC 700345 5661759 YP_001501223.1 CDS fliF NC_009901.1 1658188 1659888 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1658188..1659888 Shewanella pealeana ATCC 700345 5661760 YP_001501224.1 CDS fliG NC_009901.1 1659878 1660927 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1659878..1660927 Shewanella pealeana ATCC 700345 5661761 YP_001501225.1 CDS Spea_1363 NC_009901.1 1660927 1661877 D PFAM: flagellar assembly protein FliH; KEGG: sbm:Shew185_2934 flagellar assembly protein FliH; flagellar assembly protein FliH 1660927..1661877 Shewanella pealeana ATCC 700345 5661762 YP_001501226.1 CDS fliI NC_009901.1 1661849 1663189 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1661849..1663189 Shewanella pealeana ATCC 700345 5661763 YP_001501227.1 CDS Spea_1365 NC_009901.1 1663244 1663690 D TIGRFAM: flagellar export protein FliJ; KEGG: son:SO_3224 flagellar protein FliJ; flagellar export protein FliJ 1663244..1663690 Shewanella pealeana ATCC 700345 5661764 YP_001501228.1 CDS Spea_1366 NC_009901.1 1663908 1665434 D PFAM: flagellar hook-length control protein; KEGG: slo:Shew_1371 flagellar hook-length control protein; flagellar hook-length control protein 1663908..1665434 Shewanella pealeana ATCC 700345 5661765 YP_001501229.1 CDS fliL NC_009901.1 1665511 1666029 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1665511..1666029 Shewanella pealeana ATCC 700345 5661766 YP_001501230.1 CDS fliM NC_009901.1 1666098 1667126 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1666098..1667126 Shewanella pealeana ATCC 700345 5661767 YP_001501231.1 CDS fliN NC_009901.1 1667139 1667519 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1667139..1667519 Shewanella pealeana ATCC 700345 5661768 YP_001501232.1 CDS Spea_1370 NC_009901.1 1667547 1667921 D PFAM: flagellar biosynthesis protein FliO; KEGG: slo:Shew_1375 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 1667547..1667921 Shewanella pealeana ATCC 700345 5661769 YP_001501233.1 CDS fliP NC_009901.1 1667932 1668681 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1667932..1668681 Shewanella pealeana ATCC 700345 5661770 YP_001501234.1 CDS Spea_1372 NC_009901.1 1668689 1668958 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: slo:Shew_1377 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1668689..1668958 Shewanella pealeana ATCC 700345 5661771 YP_001501235.1 CDS fliR NC_009901.1 1668997 1669797 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1668997..1669797 Shewanella pealeana ATCC 700345 5661772 YP_001501236.1 CDS flhB NC_009901.1 1669939 1671072 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1669939..1671072 Shewanella pealeana ATCC 700345 5661773 YP_001501237.1 CDS flhA NC_009901.1 1671339 1673438 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1671339..1673438 Shewanella pealeana ATCC 700345 5661774 YP_001501238.1 CDS flhF NC_009901.1 1673450 1674862 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1673450..1674862 Shewanella pealeana ATCC 700345 5661775 YP_001501239.1 CDS Spea_1377 NC_009901.1 1674867 1675748 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: saz:Sama_2281 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1674867..1675748 Shewanella pealeana ATCC 700345 5661776 YP_001501240.1 CDS fliA NC_009901.1 1675741 1676460 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1675741..1676460 Shewanella pealeana ATCC 700345 5661777 YP_001501241.1 CDS Spea_1379 NC_009901.1 1676497 1676904 D PFAM: response regulator receiver; KEGG: slo:Shew_1384 response regulator receiver protein; response regulator receiver protein 1676497..1676904 Shewanella pealeana ATCC 700345 5661778 YP_001501242.1 CDS Spea_1380 NC_009901.1 1676918 1677655 D PFAM: Chemotaxis phosphatase CheZ; KEGG: saz:Sama_2278 putative chemotaxis phosphatase, CheZ; chemotaxis phosphatase CheZ 1676918..1677655 Shewanella pealeana ATCC 700345 5661779 YP_001501243.1 CDS Spea_1381 NC_009901.1 1677668 1679893 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: slo:Shew_1386 CheA signal transduction histidine kinase; signal transduction histidine kinase CheA 1677668..1679893 Shewanella pealeana ATCC 700345 5661780 YP_001501244.1 CDS Spea_1382 NC_009901.1 1679983 1681164 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1679983..1681164 Shewanella pealeana ATCC 700345 5661781 YP_001501245.1 CDS Spea_1383 NC_009901.1 1681157 1681843 D KEGG: slo:Shew_1388 hypothetical protein; hypothetical protein 1681157..1681843 Shewanella pealeana ATCC 700345 5661782 YP_001501246.1 CDS Spea_1384 NC_009901.1 1681984 1682775 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_1389 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1681984..1682775 Shewanella pealeana ATCC 700345 5661783 YP_001501247.1 CDS Spea_1385 NC_009901.1 1682759 1683676 D PFAM: CheW domain protein; KEGG: slo:Shew_1390 CheW protein; CheW protein 1682759..1683676 Shewanella pealeana ATCC 700345 5661784 YP_001501248.1 CDS Spea_1386 NC_009901.1 1684185 1684676 D PFAM: CheW domain protein; KEGG: slo:Shew_1391 CheW protein; CheW protein 1684185..1684676 Shewanella pealeana ATCC 700345 5661785 YP_001501249.1 CDS Spea_1387 NC_009901.1 1685059 1685463 D KEGG: slo:Shew_1392 hypothetical protein; hypothetical protein 1685059..1685463 Shewanella pealeana ATCC 700345 5661786 YP_001501250.1 CDS Spea_1388 NC_009901.1 1685881 1686189 R KEGG: sbm:Shew185_2909 FlhB domain protein; FlhB domain-containing protein complement(1685881..1686189) Shewanella pealeana ATCC 700345 5661787 YP_001501251.1 CDS Spea_1389 NC_009901.1 1686216 1687718 R KEGG: son:SO_3198 hypothetical protein; hypothetical protein complement(1686216..1687718) Shewanella pealeana ATCC 700345 5661788 YP_001501252.1 CDS Spea_1390 NC_009901.1 1688215 1688982 D PFAM: VacJ family lipoprotein; KEGG: sbl:Sbal_2897 VacJ family lipoprotein; VacJ family lipoprotein 1688215..1688982 Shewanella pealeana ATCC 700345 5661789 YP_001501253.1 CDS Spea_1391 NC_009901.1 1689078 1690184 D PFAM: response regulator receiver; KEGG: slo:Shew_1396 response regulator receiver protein; response regulator receiver protein 1689078..1690184 Shewanella pealeana ATCC 700345 5661790 YP_001501254.1 CDS Spea_1393 NC_009901.1 1690742 1692247 R KEGG: sbl:Sbal_2895 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter complement(1690742..1692247) Shewanella pealeana ATCC 700345 5664706 YP_001501255.1 CDS Spea_1394 NC_009901.1 1692692 1693213 D TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; KEGG: slo:Shew_1398 NusG antitermination factor; transcriptional acivator RfaH 1692692..1693213 Shewanella pealeana ATCC 700345 5661792 YP_001501256.1 CDS Spea_1395 NC_009901.1 1694703 1697498 D PFAM: polysaccharide export protein; KEGG: slo:Shew_1399 polysaccharide export protein; polysaccharide export protein 1694703..1697498 Shewanella pealeana ATCC 700345 5661793 YP_001501257.1 CDS Spea_1396 NC_009901.1 1697589 1697948 D crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 1697589..1697948 Shewanella pealeana ATCC 700345 5661794 YP_001501258.1 CDS Spea_1397 NC_009901.1 1698048 1699025 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: slo:Shew_1400 lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 1698048..1699025 Shewanella pealeana ATCC 700345 5661795 YP_001501259.1 CDS Spea_1398 NC_009901.1 1699269 1700366 D NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1699269..1700366 Shewanella pealeana ATCC 700345 5661796 YP_001501260.1 CDS Spea_1399 NC_009901.1 1700366 1701238 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO_3186 glucose-1-phosphate-thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1700366..1701238 Shewanella pealeana ATCC 700345 5661797 YP_001501261.1 CDS Spea_1400 NC_009901.1 1701235 1701633 D PFAM: WxcM domain protein; KEGG: plu:plu4812 WblP protein; WxcM domain-containing protein 1701235..1701633 Shewanella pealeana ATCC 700345 5661798 YP_001501262.1 CDS Spea_1401 NC_009901.1 1701618 1702076 D PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_01180 hypothetical protein; N-acetyltransferase GCN5 1701618..1702076 Shewanella pealeana ATCC 700345 5661799 YP_001501263.1 CDS Spea_1402 NC_009901.1 1702078 1703004 D KEGG: chu:CHU_2508 hypothetical protein; hypothetical protein 1702078..1703004 Shewanella pealeana ATCC 700345 5661800 YP_001501264.1 CDS Spea_1403 NC_009901.1 1703001 1704116 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: plu:plu4813 WblQ protein; DegT/DnrJ/EryC1/StrS aminotransferase 1703001..1704116 Shewanella pealeana ATCC 700345 5661801 YP_001501265.1 CDS Spea_1404 NC_009901.1 1704129 1707101 D KEGG: nph:NP1948A hypothetical protein; hypothetical protein 1704129..1707101 Shewanella pealeana ATCC 700345 5661802 YP_001501266.1 CDS Spea_1405 NC_009901.1 1707098 1707727 D PFAM: peptidase C26; KEGG: nph:NP1950A sugar metabolism cluster protein (predicted glutamine amidotransferases); peptidase C26 1707098..1707727 Shewanella pealeana ATCC 700345 5661803 YP_001501267.1 CDS Spea_1406 NC_009901.1 1707724 1708515 D KEGG: hha:Hhal_0773 nucleotidyl transferase; nucleotidyl transferase 1707724..1708515 Shewanella pealeana ATCC 700345 5661804 YP_001501268.1 CDS Spea_1407 NC_009901.1 1708496 1709797 D PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: fjo:Fjoh_2238 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1708496..1709797 Shewanella pealeana ATCC 700345 5661805 YP_001501269.1 CDS Spea_1408 NC_009901.1 1709809 1711257 D PFAM: polysaccharide biosynthesis protein; KEGG: fjo:Fjoh_2240 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1709809..1711257 Shewanella pealeana ATCC 700345 5661806 YP_001501270.1 CDS Spea_1409 NC_009901.1 1711365 1712435 D PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1357 glycosyl transferase, group 1; group 1 glycosyl transferase 1711365..1712435 Shewanella pealeana ATCC 700345 5661807 YP_001501271.1 CDS Spea_1410 NC_009901.1 1712484 1713719 D KEGG: ftf:FTF1458c membrane protein/O-antigen protein; hypothetical protein 1712484..1713719 Shewanella pealeana ATCC 700345 5661808 YP_001501272.1 CDS Spea_1411 NC_009901.1 1713709 1714659 D PFAM: glycosyl transferase family 2; KEGG: esa:ESA_01184 hypothetical protein; glycosyl transferase family protein 1713709..1714659 Shewanella pealeana ATCC 700345 5661809 YP_001501273.1 CDS Spea_1412 NC_009901.1 1714661 1715428 D PFAM: glycosyl transferase family 2; KEGG: cdf:CD2772 putative teichuronic acid biosynthesis glycosyl transferase; glycosyl transferase family protein 1714661..1715428 Shewanella pealeana ATCC 700345 5661810 YP_001501274.1 CDS Spea_1413 NC_009901.1 1715486 1716649 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: wbgX; putative glycosyltransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1715486..1716649 Shewanella pealeana ATCC 700345 5661811 YP_001501275.1 CDS Spea_1414 NC_009901.1 1716642 1717238 D PFAM: sugar transferase; KEGG: wbgY; putative glycosyltransferase; sugar transferase 1716642..1717238 Shewanella pealeana ATCC 700345 5661812 YP_001501276.1 CDS Spea_1416 NC_009901.1 1718393 1720336 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sbl:Sbal_2876 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 1718393..1720336 Shewanella pealeana ATCC 700345 5664707 YP_001501277.1 CDS Spea_1417 NC_009901.1 1720905 1722413 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sfr:Sfri_2820 beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase complement(1720905..1722413) Shewanella pealeana ATCC 700345 5661814 YP_001501278.1 CDS Spea_1418 NC_009901.1 1722866 1724032 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: she:Shewmr4_1330 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 1722866..1724032 Shewanella pealeana ATCC 700345 5661815 YP_001501279.1 CDS Spea_1419 NC_009901.1 1724390 1725400 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: she:Shewmr4_3886 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase 1724390..1725400 Shewanella pealeana ATCC 700345 5661816 YP_001501280.1 CDS Spea_1420 NC_009901.1 1725678 1726247 D KEGG: shw:Sputw3181_1476 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1725678..1726247 Shewanella pealeana ATCC 700345 5661817 YP_001501281.1 CDS Spea_1421 NC_009901.1 1726537 1727736 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: sbl:Sbal_2320 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(1726537..1727736) Shewanella pealeana ATCC 700345 5661818 YP_001501282.1 CDS Spea_1422 NC_009901.1 1727790 1728245 R KEGG: shn:Shewana3_2003 glycerol-3-phosphate cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase complement(1727790..1728245) Shewanella pealeana ATCC 700345 5661819 YP_001501283.1 CDS Spea_1423 NC_009901.1 1728315 1729742 R KEGG: shn:Shewana3_2004 nucleotidyl transferase; nucleotidyl transferase complement(1728315..1729742) Shewanella pealeana ATCC 700345 5661820 YP_001501284.1 CDS Spea_1424 NC_009901.1 1729753 1731924 R KEGG: shn:Shewana3_2005 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(1729753..1731924) Shewanella pealeana ATCC 700345 5661821 YP_001501285.1 CDS Spea_1425 NC_009901.1 1732177 1733250 R PFAM: glycosyl transferase family 2; KEGG: shn:Shewana3_2006 glycosyl transferase, family 2; glycosyl transferase family protein complement(1732177..1733250) Shewanella pealeana ATCC 700345 5661822 YP_001501286.1 CDS Spea_1426 NC_009901.1 1733240 1734607 R PFAM: polysaccharide biosynthesis protein; KEGG: shn:Shewana3_2007 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1733240..1734607) Shewanella pealeana ATCC 700345 5661823 YP_001501287.1 CDS Spea_1427 NC_009901.1 1735201 1736448 R KEGG: shn:Shewana3_2008 hypothetical protein; hypothetical protein complement(1735201..1736448) Shewanella pealeana ATCC 700345 5661824 YP_001501288.1 CDS Spea_1428 NC_009901.1 1736406 1737812 R KEGG: shn:Shewana3_2009 hypothetical protein; hypothetical protein complement(1736406..1737812) Shewanella pealeana ATCC 700345 5661825 YP_001501289.1 CDS Spea_1429 NC_009901.1 1737840 1739147 R PFAM: polysaccharide export protein; KEGG: shn:Shewana3_2010 polysaccharide export protein; polysaccharide export protein complement(1737840..1739147) Shewanella pealeana ATCC 700345 5661826 YP_001501290.1 CDS Spea_1430 NC_009901.1 1739159 1739524 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: shn:Shewana3_2011 anti-sigma-factor antagonist; anti-sigma-factor antagonist complement(1739159..1739524) Shewanella pealeana ATCC 700345 5661827 YP_001501291.1 CDS Spea_1431 NC_009901.1 1740203 1740592 R KEGG: shn:Shewana3_2012 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor complement(1740203..1740592) Shewanella pealeana ATCC 700345 5661828 YP_001501292.1 CDS Spea_1432 NC_009901.1 1740608 1741831 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: shn:Shewana3_2013 response regulator receiver modulated serine phosphatase; response regulator receiver modulated serine phosphatase complement(1740608..1741831) Shewanella pealeana ATCC 700345 5661829 YP_001501293.1 CDS Spea_1433 NC_009901.1 1742026 1742889 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: shn:Shewana3_2014 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1742026..1742889 Shewanella pealeana ATCC 700345 5661830 YP_001501294.1 CDS Spea_1434 NC_009901.1 1742889 1746449 D KEGG: shn:Shewana3_2015 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1742889..1746449 Shewanella pealeana ATCC 700345 5661831 YP_001501295.1 CDS Spea_1435 NC_009901.1 1746558 1748054 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: shn:Shewana3_2016 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 1746558..1748054 Shewanella pealeana ATCC 700345 5661832 YP_001501296.1 CDS Spea_1436 NC_009901.1 1748151 1748933 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfr:Sfri_3709 PHP C-terminal domain protein; putative hydrolase 1748151..1748933 Shewanella pealeana ATCC 700345 5661833 YP_001501297.1 CDS Spea_1437 NC_009901.1 1748985 1750076 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: shn:Shewana3_2793 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1748985..1750076 Shewanella pealeana ATCC 700345 5661834 YP_001501298.1 CDS Spea_1438 NC_009901.1 1750387 1751853 R KEGG: slo:Shew_1426 hypothetical protein; hypothetical protein complement(1750387..1751853) Shewanella pealeana ATCC 700345 5661835 YP_001501299.1 CDS Spea_1439 NC_009901.1 1752143 1754695 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbl:Sbal_1133 beta-glucosidase; glycoside hydrolase family 3 1752143..1754695 Shewanella pealeana ATCC 700345 5661836 YP_001501300.1 CDS Spea_1440 NC_009901.1 1754834 1755622 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: slo:Shew_1427 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1754834..1755622 Shewanella pealeana ATCC 700345 5661837 YP_001501301.1 CDS Spea_1441 NC_009901.1 1755727 1756632 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1755727..1756632 Shewanella pealeana ATCC 700345 5661838 YP_001501302.1 CDS Spea_1442 NC_009901.1 1756797 1757567 D PFAM: protein of unknown function DUF218; KEGG: slo:Shew_1429 protein of unknown function DUF218; hypothetical protein 1756797..1757567 Shewanella pealeana ATCC 700345 5661839 YP_001501303.1 CDS Spea_1443 NC_009901.1 1757890 1758564 D KEGG: shm:Shewmr7_2681 hypothetical protein; hypothetical protein 1757890..1758564 Shewanella pealeana ATCC 700345 5661840 YP_001501304.1 CDS Spea_1444 NC_009901.1 1758685 1759110 R PFAM: protein of unknown function DUF583; KEGG: slo:Shew_1431 protein of unknown function DUF583; hypothetical protein complement(1758685..1759110) Shewanella pealeana ATCC 700345 5661841 YP_001501305.1 CDS Spea_1445 NC_009901.1 1759212 1759691 R TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_2784 ferredoxin-type protein NapF; ferredoxin-type protein NapF complement(1759212..1759691) Shewanella pealeana ATCC 700345 5661842 YP_001501306.1 CDS Spea_1446 NC_009901.1 1759867 1760886 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: slo:Shew_1433 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1759867..1760886) Shewanella pealeana ATCC 700345 5661843 YP_001501307.1 CDS Spea_1447 NC_009901.1 1760970 1761878 R KEGG: sbm:Shew185_1478 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(1760970..1761878) Shewanella pealeana ATCC 700345 5661844 YP_001501308.1 CDS phhA NC_009901.1 1762393 1763184 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1762393..1763184 Shewanella pealeana ATCC 700345 5661845 YP_001501309.1 CDS phhB NC_009901.1 1763267 1763605 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1763267..1763605 Shewanella pealeana ATCC 700345 5661846 YP_001501310.1 CDS Spea_1450 NC_009901.1 1763886 1765427 D PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: slo:Shew_1437 transcriptional regulator, TyrR; transcriptional regulator TyrR 1763886..1765427 Shewanella pealeana ATCC 700345 5661847 YP_001501311.1 CDS Spea_1451 NC_009901.1 1765708 1766694 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: slo:Shew_1438 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1765708..1766694 Shewanella pealeana ATCC 700345 5661848 YP_001501312.1 CDS Spea_1452 NC_009901.1 1766811 1767461 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: shn:Shewana3_2777 response regulator receiver protein; maleylacetoacetate isomerase 1766811..1767461 Shewanella pealeana ATCC 700345 5661849 YP_001501313.1 CDS Spea_1453 NC_009901.1 1767553 1768434 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shn:Shewana3_1691 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1767553..1768434) Shewanella pealeana ATCC 700345 5661850 YP_001501314.1 CDS Spea_1454 NC_009901.1 1768643 1769872 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_1441 major facilitator superfamily MFS_1; major facilitator transporter 1768643..1769872 Shewanella pealeana ATCC 700345 5661851 YP_001501315.1 CDS Spea_1455 NC_009901.1 1769998 1770276 R KEGG: slo:Shew_1448 hypothetical protein; hypothetical protein complement(1769998..1770276) Shewanella pealeana ATCC 700345 5661852 YP_001501316.1 CDS gltX NC_009901.1 1772396 1773805 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1772396..1773805 Shewanella pealeana ATCC 700345 5664718 YP_001501317.1 CDS Spea_1457 NC_009901.1 1777529 1779358 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_1451 ABC transporter-related protein; ABC transporter-like protein complement(1777529..1779358) Shewanella pealeana ATCC 700345 5664733 YP_001501318.1 CDS Spea_1458 NC_009901.1 1779534 1781048 D PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: shn:Shewana3_1420 transcriptional regulator, AraC family; AraC family transcriptional regulator 1779534..1781048 Shewanella pealeana ATCC 700345 5661855 YP_001501319.1 CDS Spea_1459 NC_009901.1 1781045 1781608 D KEGG: sdn:Sden_2530 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 1781045..1781608 Shewanella pealeana ATCC 700345 5661856 YP_001501320.1 CDS Spea_1460 NC_009901.1 1781753 1783081 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_1513 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1781753..1783081 Shewanella pealeana ATCC 700345 5661857 YP_001501321.1 CDS Spea_1461 NC_009901.1 1783304 1783774 D PFAM: Dual specificity protein phosphatase; KEGG: shw:Sputw3181_1514 dual specificity protein phosphatase; dual specificity protein phosphatase 1783304..1783774 Shewanella pealeana ATCC 700345 5661858 YP_001501322.1 CDS Spea_1462 NC_009901.1 1783801 1785345 D PFAM: phospholipase D/Transphosphatidylase; KEGG: slo:Shew_1456 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 1783801..1785345 Shewanella pealeana ATCC 700345 5661859 YP_001501323.1 CDS Spea_1463 NC_009901.1 1785414 1786340 D PFAM: response regulator receiver; CheW domain protein; KEGG: slo:Shew_1457 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 1785414..1786340 Shewanella pealeana ATCC 700345 5661860 YP_001501324.1 CDS Spea_1464 NC_009901.1 1786520 1787743 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1786520..1787743 Shewanella pealeana ATCC 700345 5661861 YP_001501325.1 CDS Spea_1465 NC_009901.1 1787864 1789234 R PFAM: oxidoreductase domain protein; KEGG: sbm:Shew185_2813 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(1787864..1789234) Shewanella pealeana ATCC 700345 5661862 YP_001501326.1 CDS Spea_1466 NC_009901.1 1789519 1789929 D KEGG: slo:Shew_1459 hypothetical protein; hypothetical protein 1789519..1789929 Shewanella pealeana ATCC 700345 5661863 YP_001501327.1 CDS Spea_1467 NC_009901.1 1790099 1790752 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_1442 pseudouridylate synthase; pseudouridine synthase complement(1790099..1790752) Shewanella pealeana ATCC 700345 5661864 YP_001501328.1 CDS Spea_1468 NC_009901.1 1790889 1791482 R PFAM: protein of unknown function DUF479; KEGG: slo:Shew_2339 protein of unknown function DUF479; hypothetical protein complement(1790889..1791482) Shewanella pealeana ATCC 700345 5661865 YP_001501329.1 CDS queA NC_009901.1 1791929 1792966 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1791929..1792966 Shewanella pealeana ATCC 700345 5661866 YP_001501330.1 CDS tgt NC_009901.1 1793152 1794285 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1793152..1794285 Shewanella pealeana ATCC 700345 5661867 YP_001501331.1 CDS yajC NC_009901.1 1794316 1794648 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1794316..1794648 Shewanella pealeana ATCC 700345 5661868 YP_001501332.1 CDS secD NC_009901.1 1794684 1796516 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1794684..1796516 Shewanella pealeana ATCC 700345 5661869 YP_001501333.1 CDS secF NC_009901.1 1796529 1797476 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1796529..1797476 Shewanella pealeana ATCC 700345 5661870 YP_001501334.1 CDS Spea_1474 NC_009901.1 1797742 1798059 D KEGG: slo:Shew_2333 hypothetical protein; hypothetical protein 1797742..1798059 Shewanella pealeana ATCC 700345 5661871 YP_001501335.1 CDS Spea_1475 NC_009901.1 1798059 1798418 D PFAM: Rhodanese domain protein; KEGG: saz:Sama_2188 rhodanese-like protein; rhodanese domain-containing protein 1798059..1798418 Shewanella pealeana ATCC 700345 5661872 YP_001501336.1 CDS Spea_1476 NC_009901.1 1798502 1799413 D TIGRFAM: siroheme synthase; KEGG: sbl:Sbal_2781 siroheme synthase; siroheme synthase 1798502..1799413 Shewanella pealeana ATCC 700345 5661873 YP_001501337.1 CDS Spea_1477 NC_009901.1 1799940 1800485 D PFAM: YaeQ family protein; KEGG: shw:Sputw3181_1530 YaeQ family protein; YaeQ family protein 1799940..1800485 Shewanella pealeana ATCC 700345 5661874 YP_001501338.1 CDS Spea_1478 NC_009901.1 1800580 1802019 R PFAM: carbon starvation protein CstA; KEGG: slo:Shew_2330 carbon starvation protein CstA; carbon starvation protein CstA complement(1800580..1802019) Shewanella pealeana ATCC 700345 5661875 YP_001501339.1 CDS Spea_1479 NC_009901.1 1802187 1802897 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(1802187..1802897) Shewanella pealeana ATCC 700345 5661876 YP_001501340.1 CDS Spea_1480 NC_009901.1 1802901 1804574 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: shn:Shewana3_2593 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS complement(1802901..1804574) Shewanella pealeana ATCC 700345 5661877 YP_001501341.1 CDS Spea_1481 NC_009901.1 1804760 1805002 D KEGG: sfr:Sfri_1783 hypothetical protein; hypothetical protein 1804760..1805002 Shewanella pealeana ATCC 700345 5661878 YP_001501342.1 CDS Spea_1482 NC_009901.1 1805074 1805370 R PFAM: type IV pilus assembly PilZ; KEGG: shn:Shewana3_2589 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1805074..1805370) Shewanella pealeana ATCC 700345 5661879 YP_001501343.1 CDS Spea_1483 NC_009901.1 1805587 1805994 R PFAM: phosphate-starvation-inducible E; KEGG: shn:Shewana3_2588 phosphate-starvation-inducible E; phosphate-starvation-inducible E complement(1805587..1805994) Shewanella pealeana ATCC 700345 5661880 YP_001501344.1 CDS Spea_1484 NC_009901.1 1806578 1807378 R PFAM: inositol monophosphatase; KEGG: slo:Shew_2321 inositol monophosphatase; inositol-phosphate phosphatase complement(1806578..1807378) Shewanella pealeana ATCC 700345 5661881 YP_001501345.1 CDS Spea_1485 NC_009901.1 1807534 1808298 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: slo:Shew_2320 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1807534..1808298 Shewanella pealeana ATCC 700345 5661882 YP_001501346.1 CDS Spea_1486 NC_009901.1 1808326 1809147 D TIGRFAM: serine O-acetyltransferase; KEGG: she:Shewmr4_1737 serine O-acetyltransferase; serine O-acetyltransferase 1808326..1809147 Shewanella pealeana ATCC 700345 5661883 YP_001501347.1 CDS Spea_1487 NC_009901.1 1809342 1809803 D TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: slo:Shew_2318 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 1809342..1809803 Shewanella pealeana ATCC 700345 5661884 YP_001501348.1 CDS Spea_1488 NC_009901.1 1809887 1811101 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1809887..1811101 Shewanella pealeana ATCC 700345 5661885 YP_001501349.1 CDS Spea_1489 NC_009901.1 1811142 1811525 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: slo:Shew_2316 FeS cluster assembly scaffold IscU; scaffold protein 1811142..1811525 Shewanella pealeana ATCC 700345 5661886 YP_001501350.1 CDS Spea_1490 NC_009901.1 1811540 1811863 D TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: slo:Shew_2315 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 1811540..1811863 Shewanella pealeana ATCC 700345 5661887 YP_001501351.1 CDS hscB NC_009901.1 1811882 1812406 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1811882..1812406 Shewanella pealeana ATCC 700345 5661888 YP_001501352.1 CDS hscA NC_009901.1 1812476 1814338 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1812476..1814338 Shewanella pealeana ATCC 700345 5661889 YP_001501353.1 CDS Spea_1493 NC_009901.1 1814347 1814682 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: slo:Shew_2312 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1814347..1814682 Shewanella pealeana ATCC 700345 5661890 YP_001501354.1 CDS Spea_1494 NC_009901.1 1814795 1815193 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 1814795..1815193 Shewanella pealeana ATCC 700345 5661891 YP_001501355.1 CDS Spea_1495 NC_009901.1 1815277 1816029 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 1815277..1816029 Shewanella pealeana ATCC 700345 5661892 YP_001501356.1 CDS Spea_1496 NC_009901.1 1816742 1816939 D PFAM: protein of unknown function DUF528; KEGG: slo:Shew_2311 protein of unknown function DUF528; hypothetical protein 1816742..1816939 Shewanella pealeana ATCC 700345 5661893 YP_001501357.1 CDS Spea_1497 NC_009901.1 1817121 1817285 D KEGG: saz:Sama_1300 hypothetical protein; hypothetical protein 1817121..1817285 Shewanella pealeana ATCC 700345 5661894 YP_001501358.1 CDS ndk NC_009901.1 1817514 1817945 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1817514..1817945 Shewanella pealeana ATCC 700345 5661895 YP_001501359.1 CDS Spea_1499 NC_009901.1 1819107 1821791 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_2244 TonB-dependent receptor; TonB-dependent receptor 1819107..1821791 Shewanella pealeana ATCC 700345 5661896 YP_001501360.1 CDS Spea_1500 NC_009901.1 1821915 1822271 R KEGG: shm:Shewmr7_2334 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(1821915..1822271) Shewanella pealeana ATCC 700345 5661897 YP_001501361.1 CDS Spea_1501 NC_009901.1 1822390 1823349 R PFAM: dihydrouridine synthase DuS; KEGG: son:SO_2006 NifR3/Smm1 family protein; dihydrouridine synthase complement(1822390..1823349) Shewanella pealeana ATCC 700345 5661898 YP_001501362.1 CDS Spea_1502 NC_009901.1 1823718 1824200 D KEGG: pha:PSHAa1196 hypothetical protein; hypothetical protein 1823718..1824200 Shewanella pealeana ATCC 700345 5661899 YP_001501363.1 CDS Spea_1503 NC_009901.1 1824280 1825131 D PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: slo:Shew_2240 protein of unknown function DUF692; hypothetical protein 1824280..1825131 Shewanella pealeana ATCC 700345 5661900 YP_001501364.1 CDS Spea_1504 NC_009901.1 1825131 1825877 D KEGG: slo:Shew_2239 hypothetical protein; hypothetical protein 1825131..1825877 Shewanella pealeana ATCC 700345 5661901 YP_001501365.1 CDS Spea_1505 NC_009901.1 1825971 1826090 D KEGG: sfr:Sfri_2410 hypothetical protein; hypothetical protein 1825971..1826090 Shewanella pealeana ATCC 700345 5661902 YP_001501366.1 CDS Spea_1506 NC_009901.1 1826164 1826532 D PFAM: protein of unknown function DUF454; KEGG: slo:Shew_2237 protein of unknown function DUF454; hypothetical protein 1826164..1826532 Shewanella pealeana ATCC 700345 5661903 YP_001501367.1 CDS Spea_1507 NC_009901.1 1826790 1827341 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1826790..1827341 Shewanella pealeana ATCC 700345 5661904 YP_001501368.1 CDS Spea_1508 NC_009901.1 1827540 1830386 D KEGG: shn:Shewana3_2446 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1827540..1830386 Shewanella pealeana ATCC 700345 5661905 YP_001501369.1 CDS Spea_1509 NC_009901.1 1830487 1830816 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_2234 conserved hypothetical protein 103; hypothetical protein 1830487..1830816 Shewanella pealeana ATCC 700345 5661906 YP_001501370.1 CDS Spea_1510 NC_009901.1 1831042 1831602 R KEGG: pla:Plav_3095 transferase hexapeptide repeat containing protein; acetyltransferase complement(1831042..1831602) Shewanella pealeana ATCC 700345 5661907 YP_001501371.1 CDS Spea_1511 NC_009901.1 1832071 1832754 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpp:lpp2174 hypothetical protein; Sel1 domain-containing protein 1832071..1832754 Shewanella pealeana ATCC 700345 5661908 YP_001501372.1 CDS Spea_1512 NC_009901.1 1832757 1833677 D hypothetical protein 1832757..1833677 Shewanella pealeana ATCC 700345 5661909 YP_001501373.1 CDS Spea_1513 NC_009901.1 1834262 1837156 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pha:PSHAb0158 putative TonB-dependent receptor with TonB-box; TonB-dependent receptor 1834262..1837156 Shewanella pealeana ATCC 700345 5661910 YP_001501374.1 CDS Spea_1514 NC_009901.1 1837304 1838458 D PFAM: Kelch repeat-containing protein; KEGG: cpe:CPE0726 hypothetical protein; kelch repeat-containing protein 1837304..1838458 Shewanella pealeana ATCC 700345 5661911 YP_001501375.1 CDS Spea_1515 NC_009901.1 1838982 1841831 D KEGG: vco:VC0395_A1381 neuraminidase; exo-alpha-sialidase 1838982..1841831 Shewanella pealeana ATCC 700345 5661912 YP_001501376.1 CDS Spea_1516 NC_009901.1 1841922 1842734 R KEGG: pha:PSHAb0155 putative hydrolase; putative hydrolase complement(1841922..1842734) Shewanella pealeana ATCC 700345 5661913 YP_001501377.1 CDS Spea_1517 NC_009901.1 1842935 1843639 D Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 1842935..1843639 Shewanella pealeana ATCC 700345 5661914 YP_001501378.1 CDS Spea_1518 NC_009901.1 1843894 1846572 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAb0151 putative sodium-dependent carbohydrate permease; SSS family solute/sodium (Na+) symporter 1843894..1846572 Shewanella pealeana ATCC 700345 5661915 YP_001501379.1 CDS Spea_1519 NC_009901.1 1846596 1847351 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1846596..1847351 Shewanella pealeana ATCC 700345 5661916 YP_001501380.1 CDS Spea_1520 NC_009901.1 1847348 1848220 D PFAM: ROK family protein; KEGG: pha:PSHAb0149 putative N-acetylglucosamine kinase with actin-like ATPase domain/transcriptional regulator (NagC/XylR (ROK) family); ROK family protein 1847348..1848220 Shewanella pealeana ATCC 700345 5661917 YP_001501381.1 CDS Spea_1521 NC_009901.1 1848293 1849132 D TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: cps:CPS_1008 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 1848293..1849132 Shewanella pealeana ATCC 700345 5661918 YP_001501382.1 CDS Spea_1522 NC_009901.1 1849545 1850450 R PFAM: dihydrodipicolinate synthetase; KEGG: pha:PSHAb0156 N-acetylneuraminate lyase (aldolase); dihydrodipicolinate synthetase complement(1849545..1850450) Shewanella pealeana ATCC 700345 5661919 YP_001501383.1 CDS Spea_1523 NC_009901.1 1850469 1851605 R KEGG: pha:PSHAb0157 putative N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase complement(1850469..1851605) Shewanella pealeana ATCC 700345 5661920 YP_001501384.1 CDS Spea_1524 NC_009901.1 1852024 1853007 D KEGG: pha:PSHAb0153 hypothetical protein; hypothetical protein 1852024..1853007 Shewanella pealeana ATCC 700345 5661921 YP_001501385.1 CDS recR NC_009901.1 1853244 1853843 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1853244..1853843 Shewanella pealeana ATCC 700345 5661922 YP_001501386.1 CDS Spea_1526 NC_009901.1 1854069 1855985 D molecular chaperone; heat shock protein 90 1854069..1855985 Shewanella pealeana ATCC 700345 5661923 YP_001501387.1 CDS Spea_1527 NC_009901.1 1856074 1856919 D PFAM: Thioredoxin domain; KEGG: slo:Shew_2231 thioredoxin domain protein; thioredoxin domain-containing protein 1856074..1856919 Shewanella pealeana ATCC 700345 5661924 YP_001501388.1 CDS adk NC_009901.1 1857059 1857742 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1857059..1857742 Shewanella pealeana ATCC 700345 5661925 YP_001501389.1 CDS hemH NC_009901.1 1857913 1858908 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1857913..1858908 Shewanella pealeana ATCC 700345 5661926 YP_001501390.1 CDS Spea_1530 NC_009901.1 1859148 1860476 D PFAM: PfkB domain protein; KEGG: son:SO_2020 inosine-guanosine kinase; inosine kinase 1859148..1860476 Shewanella pealeana ATCC 700345 5661927 YP_001501391.1 CDS Spea_1531 NC_009901.1 1860585 1861139 D PFAM: transferase hexapeptide repeat containing protein; KEGG: vvu:VV2_1651 acetyltransferase; hexapaptide repeat-containing transferase 1860585..1861139 Shewanella pealeana ATCC 700345 5661928 YP_001501392.1 CDS Spea_1532 NC_009901.1 1861254 1862582 R PFAM: sodium:dicarboxylate symporter; KEGG: sbl:Sbal_2499 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1861254..1862582) Shewanella pealeana ATCC 700345 5661929 YP_001501393.1 CDS Spea_1533 NC_009901.1 1862800 1865223 D PFAM: Ig domain protein group 1 domain protein; KEGG: slo:Shew_2226 Ig domain protein, group 1 domain protein; Ig domain-containing protein 1862800..1865223 Shewanella pealeana ATCC 700345 5661930 YP_001501394.1 CDS Spea_1534 NC_009901.1 1865455 1866792 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(1865455..1866792) Shewanella pealeana ATCC 700345 5661931 YP_001501395.1 CDS Spea_1535 NC_009901.1 1867129 1869819 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1867129..1869819 Shewanella pealeana ATCC 700345 5661932 YP_001501396.1 CDS Spea_1536 NC_009901.1 1869980 1870756 R KEGG: slo:Shew_1623 hypothetical protein; hypothetical protein complement(1869980..1870756) Shewanella pealeana ATCC 700345 5661933 YP_001501397.1 CDS cysB NC_009901.1 1870985 1871959 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1870985..1871959 Shewanella pealeana ATCC 700345 5661934 YP_001501398.1 CDS Spea_1538 NC_009901.1 1872055 1873431 R KEGG: she:Shewmr4_1725 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1872055..1873431) Shewanella pealeana ATCC 700345 5661935 YP_001501399.1 CDS Spea_1539 NC_009901.1 1873763 1874830 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1873763..1874830 Shewanella pealeana ATCC 700345 5661936 YP_001501400.1 CDS Spea_1540 NC_009901.1 1874904 1875443 D PFAM: protein of unknown function UPF0227; KEGG: slo:Shew_1627 protein of unknown function UPF0227; hypothetical protein 1874904..1875443 Shewanella pealeana ATCC 700345 5661937 YP_001501401.1 CDS Spea_1541 NC_009901.1 1875748 1876023 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1875748..1876023 Shewanella pealeana ATCC 700345 5661938 YP_001501402.1 CDS Spea_1542 NC_009901.1 1876020 1877027 R KEGG: slo:Shew_1629 hypothetical protein; hypothetical protein complement(1876020..1877027) Shewanella pealeana ATCC 700345 5661939 YP_001501403.1 CDS Spea_1543 NC_009901.1 1877030 1880503 R KEGG: slo:Shew_1630 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(1877030..1880503) Shewanella pealeana ATCC 700345 5661940 YP_001501404.1 CDS Spea_1544 NC_009901.1 1880594 1881178 R KEGG: shw:Sputw3181_1854 hypothetical protein; hypothetical protein complement(1880594..1881178) Shewanella pealeana ATCC 700345 5661941 YP_001501405.1 CDS Spea_1545 NC_009901.1 1881397 1882620 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: slo:Shew_1632 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1881397..1882620 Shewanella pealeana ATCC 700345 5661942 YP_001501406.1 CDS Spea_1546 NC_009901.1 1882713 1883429 D KEGG: spc:Sputcn32_2155 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1882713..1883429 Shewanella pealeana ATCC 700345 5661943 YP_001501407.1 CDS Spea_1547 NC_009901.1 1883426 1884679 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: slo:Shew_1634 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 1883426..1884679 Shewanella pealeana ATCC 700345 5661944 YP_001501408.1 CDS Spea_1548 NC_009901.1 1884734 1885114 R KEGG: sfr:Sfri_0576 hypothetical protein; hypothetical protein complement(1884734..1885114) Shewanella pealeana ATCC 700345 5661945 YP_001501409.1 CDS Spea_1549 NC_009901.1 1885454 1886368 D KEGG: ppr:PBPRB1356 hypothetical protein; hypothetical protein 1885454..1886368 Shewanella pealeana ATCC 700345 5661946 YP_001501410.1 CDS Spea_1550 NC_009901.1 1886539 1886757 D KEGG: pha:PSHAa1936 hypothetical protein; hypothetical protein 1886539..1886757 Shewanella pealeana ATCC 700345 5661947 YP_001501411.1 CDS Spea_1551 NC_009901.1 1887020 1887259 D hypothetical protein 1887020..1887259 Shewanella pealeana ATCC 700345 5661948 YP_001501412.1 CDS Spea_1552 NC_009901.1 1887593 1888642 D PFAM: secretion protein HlyD family protein; KEGG: vha:VIBHAR_07032 hypothetical protein; secretion protein HlyD family protein 1887593..1888642 Shewanella pealeana ATCC 700345 5661949 YP_001501413.1 CDS Spea_1553 NC_009901.1 1888721 1889779 D KEGG: ppr:PBPRB1428 hypothetical protein; hypothetical protein 1888721..1889779 Shewanella pealeana ATCC 700345 5661950 YP_001501414.1 CDS Spea_1554 NC_009901.1 1889751 1890212 D PFAM: regulatory protein MarR; KEGG: ppr:PBPRB1427 hypothetical transcriptional regulator; regulatory protein MarR 1889751..1890212 Shewanella pealeana ATCC 700345 5661951 YP_001501415.1 CDS Spea_1555 NC_009901.1 1890346 1890933 R PFAM: protein of unknown function DUF991; KEGG: slo:Shew_1489 protein of unknown function DUF991; hypothetical protein complement(1890346..1890933) Shewanella pealeana ATCC 700345 5661952 YP_001501416.1 CDS Spea_1556 NC_009901.1 1890983 1891498 R KEGG: son:SO_2183 hypothetical protein; hypothetical protein complement(1890983..1891498) Shewanella pealeana ATCC 700345 5661953 YP_001501417.1 CDS Spea_1557 NC_009901.1 1891712 1892545 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: slo:Shew_1491 ion transport protein; Ion transport protein 1891712..1892545 Shewanella pealeana ATCC 700345 5661954 YP_001501418.1 CDS Spea_1558 NC_009901.1 1892573 1894123 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: she:Shewmr4_1623 MATE efflux family protein; MATE efflux family protein 1892573..1894123 Shewanella pealeana ATCC 700345 5661955 YP_001501419.1 CDS Spea_1559 NC_009901.1 1894165 1894398 R KEGG: slo:Shew_1493 hypothetical protein; hypothetical protein complement(1894165..1894398) Shewanella pealeana ATCC 700345 5661956 YP_001501420.1 CDS Spea_1560 NC_009901.1 1894692 1895006 D PFAM: protein of unknown function DUF437; KEGG: vvy:VVA0554 hypothetical protein; hypothetical protein 1894692..1895006 Shewanella pealeana ATCC 700345 5661957 YP_001501421.1 CDS Spea_1561 NC_009901.1 1895194 1895838 D PFAM: regulatory protein TetR; KEGG: vha:VIBHAR_06539 hypothetical protein; TetR family transcriptional regulator 1895194..1895838 Shewanella pealeana ATCC 700345 5661958 YP_001501422.1 CDS Spea_1562 NC_009901.1 1895838 1897193 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vvu:VV2_1321 membrane-fusion protein; RND family efflux transporter MFP subunit 1895838..1897193 Shewanella pealeana ATCC 700345 5661959 YP_001501423.1 CDS Spea_1563 NC_009901.1 1897190 1900315 D PFAM: acriflavin resistance protein; KEGG: vha:VIBHAR_06541 hypothetical protein; acriflavin resistance protein 1897190..1900315 Shewanella pealeana ATCC 700345 5661960 YP_001501424.1 CDS Spea_1564 NC_009901.1 1900820 1901632 R PFAM: purine or other phosphorylase family 1; KEGG: vpa:VPA1089 putative 5'-methylthioadenosine/S-adenosylhomocy steine nuclosidase; purine phosphorylase family 1 complement(1900820..1901632) Shewanella pealeana ATCC 700345 5661961 YP_001501425.1 CDS Spea_1565 NC_009901.1 1901963 1902373 D hypothetical protein 1901963..1902373 Shewanella pealeana ATCC 700345 5661962 YP_001501426.1 CDS Spea_1566 NC_009901.1 1902474 1903436 R PFAM: Integral membrane protein TerC; KEGG: ppr:PBPRA2002 hypothetical transmembrane transportprotein; integral membrane protein TerC complement(1902474..1903436) Shewanella pealeana ATCC 700345 5661963 YP_001501427.1 CDS Spea_1567 NC_009901.1 1903852 1904304 R KEGG: slo:Shew_1496 lipoprotein, putative; putative lipoprotein complement(1903852..1904304) Shewanella pealeana ATCC 700345 5661964 YP_001501428.1 CDS Spea_1568 NC_009901.1 1904527 1905003 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: shw:Sputw3181_0824 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(1904527..1905003) Shewanella pealeana ATCC 700345 5661965 YP_001501429.1 CDS Spea_1569 NC_009901.1 1905297 1905740 R PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein complement(1905297..1905740) Shewanella pealeana ATCC 700345 5661966 YP_001501430.1 CDS Spea_1570 NC_009901.1 1906487 1907749 D PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1906487..1907749 Shewanella pealeana ATCC 700345 5661967 YP_001501431.1 CDS Spea_1571 NC_009901.1 1907819 1908595 R PFAM: band 7 protein; KEGG: slo:Shew_1785 band 7 protein; hypothetical protein complement(1907819..1908595) Shewanella pealeana ATCC 700345 5661968 YP_001501432.1 CDS Spea_1572 NC_009901.1 1908606 1910102 R PFAM: protein of unknown function DUF107; KEGG: sdn:Sden_2190 protein of unknown function DUF107; hypothetical protein complement(1908606..1910102) Shewanella pealeana ATCC 700345 5661969 YP_001501433.1 CDS Spea_1573 NC_009901.1 1910725 1912086 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1910725..1912086 Shewanella pealeana ATCC 700345 5661970 YP_001501434.1 CDS Spea_1574 NC_009901.1 1912086 1913300 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1912086..1913300 Shewanella pealeana ATCC 700345 5661971 YP_001501435.1 CDS Spea_1575 NC_009901.1 1913448 1914227 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1913448..1914227 Shewanella pealeana ATCC 700345 5661972 YP_001501436.1 CDS Spea_1576 NC_009901.1 1914231 1914854 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1914231..1914854 Shewanella pealeana ATCC 700345 5661973 YP_001501437.1 CDS Spea_1577 NC_009901.1 1914863 1915471 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1914863..1915471 Shewanella pealeana ATCC 700345 5661974 YP_001501438.1 CDS Spea_1578 NC_009901.1 1915527 1916744 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1915527..1916744 Shewanella pealeana ATCC 700345 5661975 YP_001501439.1 CDS Spea_1579 NC_009901.1 1916786 1916887 D KEGG: shw:Sputw3181_3319 NADH:ubiquinone oxidoreductase, subunit F; NADH:ubiquinone oxidoreductase subunit F 1916786..1916887 Shewanella pealeana ATCC 700345 5661976 YP_001501440.1 CDS Spea_1580 NC_009901.1 1916927 1917028 D KEGG: shw:Sputw3181_3319 NADH:ubiquinone oxidoreductase, subunit F; NADH:ubiquinone oxidoreductase subunit F 1916927..1917028 Shewanella pealeana ATCC 700345 5661977 YP_001501441.1 CDS Spea_1581 NC_009901.1 1917069 1917170 D KEGG: shw:Sputw3181_3319 NADH:ubiquinone oxidoreductase, subunit F; NADH:ubiquinone oxidoreductase subunit F 1917069..1917170 Shewanella pealeana ATCC 700345 5661978 YP_001501442.1 CDS Spea_1582 NC_009901.1 1917383 1920538 D KEGG: shn:Shewana3_2869 hypothetical protein; hypothetical protein 1917383..1920538 Shewanella pealeana ATCC 700345 5661979 YP_001501443.1 CDS Spea_1583 NC_009901.1 1920659 1920967 D KEGG: saz:Sama_3567 hypothetical protein; hypothetical protein 1920659..1920967 Shewanella pealeana ATCC 700345 5661980 YP_001501444.1 CDS Spea_1584 NC_009901.1 1921380 1923185 D PFAM: Arylsulfotransferase; KEGG: ecv:APECO1_3375 arylsulfate sulfotransferase; arylsulfotransferase 1921380..1923185 Shewanella pealeana ATCC 700345 5661981 YP_001501445.1 CDS trpA NC_009901.1 1923342 1924151 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1923342..1924151) Shewanella pealeana ATCC 700345 5661982 YP_001501446.1 CDS Spea_1586 NC_009901.1 1924162 1925391 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1924162..1925391) Shewanella pealeana ATCC 700345 5661983 YP_001501447.1 CDS Spea_1587 NC_009901.1 1925488 1926915 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1925488..1926915) Shewanella pealeana ATCC 700345 5661984 YP_001501448.1 CDS trpD NC_009901.1 1926917 1927993 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1926917..1927993) Shewanella pealeana ATCC 700345 5661985 YP_001501449.1 CDS Spea_1589 NC_009901.1 1927995 1928609 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1927995..1928609) Shewanella pealeana ATCC 700345 5661986 YP_001501450.1 CDS Spea_1590 NC_009901.1 1928606 1930189 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1928606..1930189) Shewanella pealeana ATCC 700345 5661987 YP_001501451.1 CDS Spea_1591 NC_009901.1 1930887 1931621 D PFAM: protein of unknown function DUF1538; KEGG: sfr:Sfri_2271 protein of unknown function DUF1538; hypothetical protein 1930887..1931621 Shewanella pealeana ATCC 700345 5661988 YP_001501452.1 CDS Spea_1592 NC_009901.1 1931621 1932406 D PFAM: protein of unknown function DUF1538; KEGG: slo:Shew_1498 protein of unknown function DUF1538; hypothetical protein 1931621..1932406 Shewanella pealeana ATCC 700345 5661989 YP_001501453.1 CDS Spea_1593 NC_009901.1 1932396 1932746 D KEGG: sfr:Sfri_2273 putative nitrogen regulatory protein P-II; putative nitrogen regulatory protein P-II 1932396..1932746 Shewanella pealeana ATCC 700345 5661990 YP_001501454.1 CDS Spea_1594 NC_009901.1 1932743 1933150 D PFAM: CBS domain containing protein; KEGG: slo:Shew_1500 putative signal transduction protein with CBS domains; signal-transduction protein 1932743..1933150 Shewanella pealeana ATCC 700345 5661991 YP_001501455.1 CDS Spea_1595 NC_009901.1 1933349 1934158 D PFAM: regulatory protein RecX; KEGG: sfr:Sfri_0228 regulatory protein RecX; regulatory protein RecX 1933349..1934158 Shewanella pealeana ATCC 700345 5661992 YP_001501456.1 CDS Spea_1596 NC_009901.1 1934192 1934776 R hypothetical protein complement(1934192..1934776) Shewanella pealeana ATCC 700345 5661993 YP_001501457.1 CDS Spea_1597 NC_009901.1 1935129 1935680 D PFAM: PEBP family protein; KEGG: ajs:Ajs_0693 PEBP family protein; PEBP family protein 1935129..1935680 Shewanella pealeana ATCC 700345 5661994 YP_001501458.1 CDS Spea_1598 NC_009901.1 1935847 1936203 R KEGG: shw:Sputw3181_2537 glutaredoxin; glutaredoxin complement(1935847..1936203) Shewanella pealeana ATCC 700345 5661995 YP_001501459.1 CDS Spea_1599 NC_009901.1 1936292 1936948 R PFAM: peptidase S51 dipeptidase E; KEGG: slo:Shew_1665 peptidase S51, dipeptidase E; peptidase S51 dipeptidase E complement(1936292..1936948) Shewanella pealeana ATCC 700345 5661996 YP_001501460.1 CDS Spea_1600 NC_009901.1 1937137 1940358 R PFAM: protein of unknown function DUF748; KEGG: slo:Shew_1502 protein of unknown function DUF748; hypothetical protein complement(1937137..1940358) Shewanella pealeana ATCC 700345 5661997 YP_001501461.1 CDS Spea_1601 NC_009901.1 1940724 1941431 D KEGG: slo:Shew_1505 hypothetical protein; hypothetical protein 1940724..1941431 Shewanella pealeana ATCC 700345 5661998 YP_001501462.1 CDS Spea_1602 NC_009901.1 1941605 1941967 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_1598 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1941605..1941967 Shewanella pealeana ATCC 700345 5661999 YP_001501463.1 CDS Spea_1603 NC_009901.1 1942164 1942508 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: slo:Shew_1507 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 1942164..1942508 Shewanella pealeana ATCC 700345 5662000 YP_001501464.1 CDS Spea_1604 NC_009901.1 1942884 1943606 D KEGG: cps:CPS_3225 putative lipoprotein; hypothetical protein 1942884..1943606 Shewanella pealeana ATCC 700345 5662001 YP_001501465.1 CDS Spea_1605 NC_009901.1 1943701 1945626 R PFAM: FAD dependent oxidoreductase; KEGG: sbm:Shew185_2764 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1943701..1945626) Shewanella pealeana ATCC 700345 5662002 YP_001501466.1 CDS Spea_1606 NC_009901.1 1945794 1947068 D PFAM: Beta-ketoacyl synthase; KEGG: slo:Shew_2410 beta-ketoacyl synthase; beta-ketoacyl synthase 1945794..1947068 Shewanella pealeana ATCC 700345 5662003 YP_001501467.1 CDS Spea_1607 NC_009901.1 1947207 1947566 D KEGG: cps:CPS_3947 hypothetical protein; hypothetical protein 1947207..1947566 Shewanella pealeana ATCC 700345 5662004 YP_001501468.1 CDS Spea_1608 NC_009901.1 1947713 1948666 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_412GM hypothetical protein; LysR family transcriptional regulator complement(1947713..1948666) Shewanella pealeana ATCC 700345 5662005 YP_001501469.1 CDS Spea_1609 NC_009901.1 1948811 1949977 D PFAM: alanine racemase domain protein; KEGG: eca:ECA2038 hypothetical protein; alanine racemase domain-containing protein 1948811..1949977 Shewanella pealeana ATCC 700345 5662006 YP_001501470.1 CDS Spea_1610 NC_009901.1 1949979 1950920 D PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: eca:ECA2039 putative ornithine cyclodeaminase; ornithine cyclodeaminase 1949979..1950920 Shewanella pealeana ATCC 700345 5662007 YP_001501471.1 CDS Spea_1611 NC_009901.1 1951141 1951572 R PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC2806 acetyltransferase; N-acetyltransferase GCN5 complement(1951141..1951572) Shewanella pealeana ATCC 700345 5662008 YP_001501472.1 CDS Spea_1612 NC_009901.1 1951920 1953053 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbl:Sbal_2745 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit 1951920..1953053 Shewanella pealeana ATCC 700345 5662009 YP_001501473.1 CDS Spea_1613 NC_009901.1 1953056 1954072 D KEGG: slo:Shew_2308 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 1953056..1954072 Shewanella pealeana ATCC 700345 5662010 YP_001501474.1 CDS Spea_1614 NC_009901.1 1954127 1954879 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit complement(1954127..1954879) Shewanella pealeana ATCC 700345 5662011 YP_001501475.1 CDS Spea_1615 NC_009901.1 1954963 1955361 R KEGG: mmw:Mmwyl1_3491 transposase; transposase complement(1954963..1955361) Shewanella pealeana ATCC 700345 5662012 YP_001501476.1 CDS Spea_1616 NC_009901.1 1955564 1958437 D KEGG: slo:Shew_2307 hypothetical protein; hypothetical protein 1955564..1958437 Shewanella pealeana ATCC 700345 5662013 YP_001501477.1 CDS truA NC_009901.1 1958601 1959386 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1958601..1959386 Shewanella pealeana ATCC 700345 5662014 YP_001501478.1 CDS Spea_1618 NC_009901.1 1959484 1960749 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: she:Shewmr4_1427 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1959484..1960749 Shewanella pealeana ATCC 700345 5662015 YP_001501479.1 CDS Spea_1619 NC_009901.1 1960742 1961371 D PFAM: Sporulation domain protein; KEGG: saz:Sama_2148 sporulation related; sporulation domain-containing protein 1960742..1961371 Shewanella pealeana ATCC 700345 5662016 YP_001501480.1 CDS Spea_1620 NC_009901.1 1961487 1961975 D PFAM: Colicin V production protein; KEGG: sfr:Sfri_1398 colicin V production protein; colicin V production protein 1961487..1961975 Shewanella pealeana ATCC 700345 5662017 YP_001501481.1 CDS Spea_1621 NC_009901.1 1962075 1963589 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1962075..1963589 Shewanella pealeana ATCC 700345 5662018 YP_001501482.1 CDS Spea_1622 NC_009901.1 1963627 1964355 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit complement(1963627..1964355) Shewanella pealeana ATCC 700345 5662019 YP_001501483.1 CDS Spea_1623 NC_009901.1 1964472 1964855 R KEGG: sfr:Sfri_3563 transposase; transposase complement(1964472..1964855) Shewanella pealeana ATCC 700345 5662020 YP_001501484.1 CDS Spea_1624 NC_009901.1 1965008 1965274 R hypothetical protein complement(1965008..1965274) Shewanella pealeana ATCC 700345 5662021 YP_001501485.1 CDS Spea_1625 NC_009901.1 1965468 1967486 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1965468..1967486 Shewanella pealeana ATCC 700345 5662022 YP_001501486.1 CDS Spea_1626 NC_009901.1 1967581 1968459 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: slo:Shew_2295 transcriptional regulator, AraC family; AraC family transcriptional regulator 1967581..1968459 Shewanella pealeana ATCC 700345 5662023 YP_001501487.1 CDS Spea_1627 NC_009901.1 1968625 1970703 D KEGG: slo:Shew_2294 hypothetical protein; hypothetical protein 1968625..1970703 Shewanella pealeana ATCC 700345 5662024 YP_001501488.1 CDS Spea_1628 NC_009901.1 1970873 1972909 D KEGG: sde:Sde_2360 putative alpha-glucosidase; putative alpha-glucosidase 1970873..1972909 Shewanella pealeana ATCC 700345 5662025 YP_001501489.1 CDS Spea_1629 NC_009901.1 1973037 1974908 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: sbl:Sbal_0193 methyl-accepting chemotaxis sensory transducer; Cache sensor containing methyl-accepting chemotaxis sensory transducer complement(1973037..1974908) Shewanella pealeana ATCC 700345 5662026 YP_001501490.1 CDS Spea_1630 NC_009901.1 1975184 1976077 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VFA1086 transcriptional regulators, LysR family; LysR family transcriptional regulator complement(1975184..1976077) Shewanella pealeana ATCC 700345 5662027 YP_001501491.1 CDS Spea_1631 NC_009901.1 1976323 1977417 D catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 1976323..1977417 Shewanella pealeana ATCC 700345 5662028 YP_001501492.1 CDS Spea_1632 NC_009901.1 1977417 1978601 D TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: pha:PSHAa1769 galactokinase; galactokinase 1977417..1978601 Shewanella pealeana ATCC 700345 5662029 YP_001501493.1 CDS Spea_1633 NC_009901.1 1978685 1978879 R KEGG: slo:Shew_2284 hypothetical protein; hypothetical protein complement(1978685..1978879) Shewanella pealeana ATCC 700345 5662030 YP_001501494.1 CDS Spea_1634 NC_009901.1 1979104 1980405 R PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_2270 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1979104..1980405) Shewanella pealeana ATCC 700345 5662031 YP_001501495.1 CDS Spea_1635 NC_009901.1 1980710 1981354 D PFAM: beta-lactamase domain protein; KEGG: shn:Shewana3_1493 beta-lactamase domain protein; beta-lactamase domain-containing protein 1980710..1981354 Shewanella pealeana ATCC 700345 5662032 YP_001501496.1 CDS Spea_1636 NC_009901.1 1981782 1982270 D PFAM: protein of unknown function DUF1097; KEGG: shn:Shewana3_1498 protein of unknown function DUF1097; hypothetical protein 1981782..1982270 Shewanella pealeana ATCC 700345 5662033 YP_001501497.1 CDS Spea_1637 NC_009901.1 1982571 1984019 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: slo:Shew_2263 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1982571..1984019 Shewanella pealeana ATCC 700345 5662034 YP_001501498.1 CDS Spea_1638 NC_009901.1 1984185 1984991 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1984185..1984991) Shewanella pealeana ATCC 700345 5662035 YP_001501499.1 CDS Spea_1639 NC_009901.1 1985010 1985309 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1985010..1985309) Shewanella pealeana ATCC 700345 5662036 YP_001501500.1 CDS Spea_1640 NC_009901.1 1985309 1985854 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1985309..1985854) Shewanella pealeana ATCC 700345 5662037 YP_001501501.1 CDS Spea_1641 NC_009901.1 1986010 1986315 R hypothetical protein complement(1986010..1986315) Shewanella pealeana ATCC 700345 5662038 YP_001501502.1 CDS Spea_1642 NC_009901.1 1986539 1986976 D KEGG: sbl:Sbal_3888 TonB family protein; TonB family protein 1986539..1986976 Shewanella pealeana ATCC 700345 5662039 YP_001501503.1 CDS Spea_1643 NC_009901.1 1987034 1988437 R KEGG: ppd:Ppro_0867 cytochrome c family protein; cytochrome c family protein complement(1987034..1988437) Shewanella pealeana ATCC 700345 5662040 YP_001501504.1 CDS Spea_1644 NC_009901.1 1988870 1989748 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sdn:Sden_2449 PHP-like protein; phosphotransferase domain-containing protein 1988870..1989748 Shewanella pealeana ATCC 700345 5662041 YP_001501505.1 CDS Spea_1645 NC_009901.1 1989745 1990365 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: slo:Shew_2249 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 1989745..1990365 Shewanella pealeana ATCC 700345 5662042 YP_001501506.1 CDS Spea_1646 NC_009901.1 1990483 1991271 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: slo:Shew_2248 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1990483..1991271 Shewanella pealeana ATCC 700345 5662043 YP_001501507.1 CDS Spea_1647 NC_009901.1 1991272 1991868 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shw:Sputw3181_1609 putative transcriptional regulator; segregation and condensation protein B 1991272..1991868 Shewanella pealeana ATCC 700345 5662044 YP_001501508.1 CDS Spea_1648 NC_009901.1 1991861 1992733 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: slo:Shew_2246 pseudouridine synthase; pseudouridine synthase 1991861..1992733 Shewanella pealeana ATCC 700345 5662045 YP_001501509.1 CDS Spea_1649 NC_009901.1 1992853 1993590 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: slo:Shew_2409 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(1992853..1993590) Shewanella pealeana ATCC 700345 5662046 YP_001501510.1 CDS Spea_1650 NC_009901.1 1993853 1996351 D KEGG: sbl:Sbal_2693 hypothetical protein; hypothetical protein 1993853..1996351 Shewanella pealeana ATCC 700345 5662047 YP_001501511.1 CDS Spea_1651 NC_009901.1 1996502 1997530 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1996502..1997530 Shewanella pealeana ATCC 700345 5662048 YP_001501512.1 CDS Spea_1652 NC_009901.1 1999188 1999499 R PFAM: protein of unknown function DUF437; KEGG: sbl:Sbal_2524 uncharacterised conserved protein UCP029143; hypothetical protein complement(1999188..1999499) Shewanella pealeana ATCC 700345 5662049 YP_001501513.1 CDS Spea_1653 NC_009901.1 1999942 2000979 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cps:CPS_0377 ISCps1, transposase; transposase IS116/IS110/IS902 family protein 1999942..2000979 Shewanella pealeana ATCC 700345 5662050 YP_001501514.1 CDS Spea_1654 NC_009901.1 2002234 2002935 D KEGG: sdn:Sden_3211 hypothetical protein; hypothetical protein 2002234..2002935 Shewanella pealeana ATCC 700345 5662051 YP_001501515.1 CDS Spea_1655 NC_009901.1 2003873 2004841 D PFAM: dihydrodipicolinate synthetase; KEGG: vpa:VP1335 probable dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 2003873..2004841 Shewanella pealeana ATCC 700345 5662052 YP_001501516.1 CDS Spea_1656 NC_009901.1 2005072 2006100 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: shm:Shewmr7_1537 transcriptional regulator, AraC family; AraC family transcriptional regulator 2005072..2006100 Shewanella pealeana ATCC 700345 5662053 YP_001501517.1 CDS Spea_1657 NC_009901.1 2006118 2007305 R KEGG: son:SO_2931 hypothetical protein; hypothetical protein complement(2006118..2007305) Shewanella pealeana ATCC 700345 5662054 YP_001501518.1 CDS Spea_1658 NC_009901.1 2007456 2010110 R KEGG: slo:Shew_2404 hypothetical protein; hypothetical protein complement(2007456..2010110) Shewanella pealeana ATCC 700345 5662055 YP_001501519.1 CDS Spea_1660 NC_009901.1 2011695 2012324 R PFAM: lipolytic protein G-D-S-L family; KEGG: sfr:Sfri_2568 arylesterase; arylesterase complement(2011695..2012324) Shewanella pealeana ATCC 700345 5664734 YP_001501520.1 CDS Spea_1661 NC_009901.1 2012305 2013048 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2402 ABC transporter-related protein; ABC transporter-like protein 2012305..2013048 Shewanella pealeana ATCC 700345 5662057 YP_001501521.1 CDS Spea_1662 NC_009901.1 2013039 2015492 D PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_1545 protein of unknown function DUF214; hypothetical protein 2013039..2015492 Shewanella pealeana ATCC 700345 5662058 YP_001501522.1 CDS Spea_1663 NC_009901.1 2015581 2016486 R PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: sfr:Sfri_2559 hypothetical protein; hypothetical protein complement(2015581..2016486) Shewanella pealeana ATCC 700345 5662059 YP_001501523.1 CDS folX NC_009901.1 2016548 2016919 R catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase complement(2016548..2016919) Shewanella pealeana ATCC 700345 5662060 YP_001501524.1 CDS Spea_1665 NC_009901.1 2017009 2018157 D PFAM: protein of unknown function UPF0118; KEGG: slo:Shew_2398 protein of unknown function UPF0118; hypothetical protein 2017009..2018157 Shewanella pealeana ATCC 700345 5662061 YP_001501525.1 CDS Spea_1666 NC_009901.1 2018179 2019090 D KEGG: sfr:Sfri_2556 hypothetical protein; hypothetical protein 2018179..2019090 Shewanella pealeana ATCC 700345 5662062 YP_001501526.1 CDS Spea_1667 NC_009901.1 2019657 2020121 R KEGG: shw:Sputw3181_1625 hypothetical protein; hypothetical protein complement(2019657..2020121) Shewanella pealeana ATCC 700345 5662063 YP_001501527.1 CDS Spea_1668 NC_009901.1 2020751 2022898 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(2020751..2022898) Shewanella pealeana ATCC 700345 5662064 YP_001501528.1 CDS Spea_1669 NC_009901.1 2023001 2024197 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(2023001..2024197) Shewanella pealeana ATCC 700345 5662065 YP_001501529.1 CDS Spea_1670 NC_009901.1 2024393 2024836 D PFAM: protein of unknown function DUF412; KEGG: son:SO_2914 hypothetical protein; hypothetical protein 2024393..2024836 Shewanella pealeana ATCC 700345 5662066 YP_001501530.1 CDS pflA NC_009901.1 2024862 2025602 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(2024862..2025602) Shewanella pealeana ATCC 700345 5662067 YP_001501531.1 CDS Spea_1672 NC_009901.1 2025667 2027949 R KEGG: slo:Shew_2390 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase complement(2025667..2027949) Shewanella pealeana ATCC 700345 5662068 YP_001501532.1 CDS Spea_1673 NC_009901.1 2028503 2030035 R KEGG: slo:Shew_2389 hypothetical protein; hypothetical protein complement(2028503..2030035) Shewanella pealeana ATCC 700345 5662069 YP_001501533.1 CDS Spea_1674 NC_009901.1 2030945 2032426 D PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: shw:Sputw3181_1633 formate/nitrite transporter; formate/nitrite transporter 2030945..2032426 Shewanella pealeana ATCC 700345 5662070 YP_001501534.1 CDS Spea_1675 NC_009901.1 2032478 2033383 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_1634 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2032478..2033383) Shewanella pealeana ATCC 700345 5662071 YP_001501535.1 CDS Spea_1676 NC_009901.1 2033805 2034002 D KEGG: dps:DP0461 hypothetical protein; hypothetical protein 2033805..2034002 Shewanella pealeana ATCC 700345 5662072 YP_001501536.1 CDS panF NC_009901.1 2033989 2035428 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 2033989..2035428 Shewanella pealeana ATCC 700345 5662073 YP_001501537.1 CDS Spea_1678 NC_009901.1 2035508 2037052 D PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shn:Shewana3_1557 C4-dicarboxylate anaerobic carrier; hypothetical protein 2035508..2037052 Shewanella pealeana ATCC 700345 5662074 YP_001501538.1 CDS Spea_1679 NC_009901.1 2037215 2038207 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shw:Sputw3181_1637 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(2037215..2038207) Shewanella pealeana ATCC 700345 5662075 YP_001501539.1 CDS Spea_1680 NC_009901.1 2038383 2039456 R KEGG: sfr:Sfri_2128 O-methyltransferase, putative; O-methyltransferase complement(2038383..2039456) Shewanella pealeana ATCC 700345 5662076 YP_001501540.1 CDS Spea_1681 NC_009901.1 2039629 2040306 D PFAM: regulatory protein TetR; KEGG: slo:Shew_2383 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 2039629..2040306 Shewanella pealeana ATCC 700345 5662077 YP_001501541.1 CDS Spea_1682 NC_009901.1 2040338 2041306 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: slo:Shew_2382 cysteine synthase A; cysteine synthase A complement(2040338..2041306) Shewanella pealeana ATCC 700345 5662078 YP_001501542.1 CDS Spea_1683 NC_009901.1 2041544 2042818 D PFAM: RDD domain containing protein; KEGG: sbl:Sbal_2662 RDD domain containing protein; RDD domain-containing protein 2041544..2042818 Shewanella pealeana ATCC 700345 5662079 YP_001501543.1 CDS Spea_1684 NC_009901.1 2043017 2044219 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: saz:Sama_1511 response regulator receiver protein; response regulator receiver modulated diguanylate cyclase 2043017..2044219 Shewanella pealeana ATCC 700345 5662080 YP_001501544.1 CDS Spea_1685 NC_009901.1 2044344 2046680 R KEGG: sfr:Sfri_2465 hypothetical protein; hypothetical protein complement(2044344..2046680) Shewanella pealeana ATCC 700345 5662081 YP_001501545.1 CDS Spea_1686 NC_009901.1 2046892 2047665 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(2046892..2047665) Shewanella pealeana ATCC 700345 5662082 YP_001501546.1 CDS Spea_1687 NC_009901.1 2047856 2051278 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: slo:Shew_2379 chromosome segregation protein SMC; chromosome segregation protein SMC 2047856..2051278 Shewanella pealeana ATCC 700345 5662083 YP_001501547.1 CDS Spea_1688 NC_009901.1 2051302 2052279 D TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: slo:Shew_2378 cell division protein ZipA; cell division protein ZipA 2051302..2052279 Shewanella pealeana ATCC 700345 5662084 YP_001501548.1 CDS Spea_1689 NC_009901.1 2052358 2054364 D KEGG: slo:Shew_2377 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 2052358..2054364 Shewanella pealeana ATCC 700345 5662085 YP_001501549.1 CDS Spea_1690 NC_009901.1 2054495 2054971 D KEGG: son:SO_2863 hypothetical protein; hypothetical protein 2054495..2054971 Shewanella pealeana ATCC 700345 5662086 YP_001501550.1 CDS Spea_1691 NC_009901.1 2055549 2056745 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: shn:Shewana3_1571 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2055549..2056745 Shewanella pealeana ATCC 700345 5662087 YP_001501551.1 CDS Spea_1692 NC_009901.1 2056862 2057746 D KEGG: sfr:Sfri_2458 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2056862..2057746 Shewanella pealeana ATCC 700345 5662088 YP_001501552.1 CDS Spea_1693 NC_009901.1 2057801 2058433 D PFAM: DSBA oxidoreductase; KEGG: son:SO_2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 2057801..2058433 Shewanella pealeana ATCC 700345 5662089 YP_001501553.1 CDS Spea_1694 NC_009901.1 2058689 2059627 D SMART: protein phosphatase 2C domain protein; KEGG: stt:t4521 hypothetical protein; protein serine/threonine phosphatase 2058689..2059627 Shewanella pealeana ATCC 700345 5662090 YP_001501554.1 CDS Spea_1695 NC_009901.1 2060031 2060297 D KEGG: slo:Shew_2372 hypothetical protein; hypothetical protein 2060031..2060297 Shewanella pealeana ATCC 700345 5662091 YP_001501555.1 CDS Spea_1696 NC_009901.1 2060337 2062055 D PFAM: Na+/solute symporter; KEGG: slo:Shew_2371 Na+/solute symporter; Na+/solute symporter 2060337..2062055 Shewanella pealeana ATCC 700345 5662092 YP_001501556.1 CDS Spea_1697 NC_009901.1 2062596 2064443 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: slo:Shew_2369 cyclic nucleotide-binding protein; hypothetical protein 2062596..2064443 Shewanella pealeana ATCC 700345 5662093 YP_001501557.1 CDS Spea_1698 NC_009901.1 2064506 2065192 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sbl:Sbal_2636 exonuclease, RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III 2064506..2065192 Shewanella pealeana ATCC 700345 5662094 YP_001501558.1 CDS Spea_1699 NC_009901.1 2065361 2065942 D KEGG: slo:Shew_2367 hypothetical protein; hypothetical protein 2065361..2065942 Shewanella pealeana ATCC 700345 5662095 YP_001501559.1 CDS Spea_1700 NC_009901.1 2066038 2067102 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(2066038..2067102) Shewanella pealeana ATCC 700345 5662096 YP_001501560.1 CDS Spea_1701 NC_009901.1 2067203 2067874 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: slo:Shew_2365 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2067203..2067874) Shewanella pealeana ATCC 700345 5662097 YP_001501561.1 CDS Spea_1702 NC_009901.1 2067982 2069547 R PFAM: aldehyde dehydrogenase; KEGG: slo:Shew_2364 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2067982..2069547) Shewanella pealeana ATCC 700345 5662098 YP_001501562.1 CDS Spea_1703 NC_009901.1 2069591 2070592 R PFAM: proline racemase; KEGG: slo:Shew_2363 proline racemase; hydroxyproline-2-epimerase complement(2069591..2070592) Shewanella pealeana ATCC 700345 5662099 YP_001501563.1 CDS Spea_1704 NC_009901.1 2070754 2070954 R KEGG: slo:Shew_2362 dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(2070754..2070954) Shewanella pealeana ATCC 700345 5662100 YP_001501564.1 CDS Spea_1705 NC_009901.1 2071143 2072183 D PFAM: proline racemase; KEGG: slo:Shew_2361 proline racemase; proline racemase 2071143..2072183 Shewanella pealeana ATCC 700345 5662101 YP_001501565.1 CDS Spea_1706 NC_009901.1 2072218 2073480 D PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_2360 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 2072218..2073480 Shewanella pealeana ATCC 700345 5662102 YP_001501566.1 CDS Spea_1707 NC_009901.1 2073600 2074826 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: ilo:IL1385 predicted NAD/FAD-binding protein; amine oxidase complement(2073600..2074826) Shewanella pealeana ATCC 700345 5662103 YP_001501567.1 CDS Spea_1708 NC_009901.1 2074870 2076399 R KEGG: ana:alr4631 unknown protein; hypothetical protein complement(2074870..2076399) Shewanella pealeana ATCC 700345 5662104 YP_001501568.1 CDS Spea_1709 NC_009901.1 2076622 2076846 D KEGG: pin:Ping_1766 hypothetical protein; hypothetical protein 2076622..2076846 Shewanella pealeana ATCC 700345 5662105 YP_001501569.1 CDS Spea_1710 NC_009901.1 2076957 2078213 R PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: lpn:lpg0281 amino acid transporter; amino acid permease-associated protein complement(2076957..2078213) Shewanella pealeana ATCC 700345 5662106 YP_001501570.1 CDS Spea_1711 NC_009901.1 2078400 2079704 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: slo:Shew_2358 peptidase M24; peptidase M24 complement(2078400..2079704) Shewanella pealeana ATCC 700345 5662107 YP_001501571.1 CDS Spea_1712 NC_009901.1 2079870 2080424 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2079870..2080424 Shewanella pealeana ATCC 700345 5662108 YP_001501572.1 CDS Spea_1714 NC_009901.1 2086795 2086914 R KEGG: vvy:VV3174 transposase and inactivated derivative; transposase and inactivated derivative complement(2086795..2086914) Shewanella pealeana ATCC 700345 5664738 YP_001501573.1 CDS Spea_1715 NC_009901.1 2086995 2087495 R KEGG: son:SO_4210 hypothetical protein; hypothetical protein complement(2086995..2087495) Shewanella pealeana ATCC 700345 5662110 YP_001501574.1 CDS Spea_1716 NC_009901.1 2087694 2088572 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: aha:AHA_0961 hypothetical protein; hypothetical protein complement(2087694..2088572) Shewanella pealeana ATCC 700345 5662111 YP_001501575.1 CDS Spea_1717 NC_009901.1 2088632 2089894 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: aha:AHA_0959 nucleoside permease; nucleoside transporter complement(2088632..2089894) Shewanella pealeana ATCC 700345 5662112 YP_001501576.1 CDS Spea_1718 NC_009901.1 2089906 2090739 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2089906..2090739) Shewanella pealeana ATCC 700345 5662113 YP_001501577.1 CDS Spea_1719 NC_009901.1 2090944 2091921 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_0957 HTH-type transcriptional regulator XapR; LysR family transcriptional regulator 2090944..2091921 Shewanella pealeana ATCC 700345 5662114 YP_001501578.1 CDS Spea_1720 NC_009901.1 2091983 2092657 R KEGG: shm:Shewmr7_1590 hypothetical protein; hypothetical protein complement(2091983..2092657) Shewanella pealeana ATCC 700345 5662115 YP_001501579.1 CDS Spea_1721 NC_009901.1 2092785 2093189 D KEGG: slo:Shew_2354 hypothetical protein; hypothetical protein 2092785..2093189 Shewanella pealeana ATCC 700345 5662116 YP_001501580.1 CDS Spea_1722 NC_009901.1 2093300 2094247 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2093300..2094247 Shewanella pealeana ATCC 700345 5662117 YP_001501581.1 CDS Spea_1723 NC_009901.1 2094322 2094654 R KEGG: slo:Shew_2352 hypothetical protein; hypothetical protein complement(2094322..2094654) Shewanella pealeana ATCC 700345 5662118 YP_001501582.1 CDS Spea_1724 NC_009901.1 2094730 2095989 R KEGG: shn:Shewana3_1721 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(2094730..2095989) Shewanella pealeana ATCC 700345 5662119 YP_001501583.1 CDS Spea_1725 NC_009901.1 2096355 2097128 R KEGG: vfi:VFA0845 hypothetical protein; hypothetical protein complement(2096355..2097128) Shewanella pealeana ATCC 700345 5662120 YP_001501584.1 CDS Spea_1726 NC_009901.1 2097272 2099323 R PFAM: beta-lactamase domain protein; KEGG: vvy:VVA1356 alkyl sulfatase; beta-lactamase domain-containing protein complement(2097272..2099323) Shewanella pealeana ATCC 700345 5662121 YP_001501585.1 CDS Spea_1727 NC_009901.1 2099532 2100446 D PFAM: regulatory protein LysR; KEGG: ppr:PBPRB0854 hypothetical transcriptional regulator; LysR family transcriptional regulator 2099532..2100446 Shewanella pealeana ATCC 700345 5662122 YP_001501586.1 CDS Spea_1728 NC_009901.1 2100616 2101758 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(2100616..2101758) Shewanella pealeana ATCC 700345 5662123 YP_001501587.1 CDS Spea_1729 NC_009901.1 2101826 2104951 R PFAM: acriflavin resistance protein; KEGG: pha:PSHAb0438 putative metabolite exporter, AcrB/D/F family; acriflavin resistance protein complement(2101826..2104951) Shewanella pealeana ATCC 700345 5662124 YP_001501588.1 CDS Spea_1730 NC_009901.1 2104951 2106057 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ilo:IL0466 RND efflux system membrane fusion protein; RND family efflux transporter MFP subunit complement(2104951..2106057) Shewanella pealeana ATCC 700345 5662125 YP_001501589.1 CDS Spea_1731 NC_009901.1 2106115 2106915 R KEGG: vfi:VFA0845 hypothetical protein; hypothetical protein complement(2106115..2106915) Shewanella pealeana ATCC 700345 5662126 YP_001501590.1 CDS Spea_1732 NC_009901.1 2107242 2108423 R PFAM: Radical SAM domain protein; KEGG: vfi:VFA0208 arylsulfatase regulator (Fe-S oxidoreductase); radical SAM domain-containing protein complement(2107242..2108423) Shewanella pealeana ATCC 700345 5662127 YP_001501591.1 CDS Spea_1733 NC_009901.1 2108502 2109134 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sfu:Sfum_1664 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2108502..2109134) Shewanella pealeana ATCC 700345 5662128 YP_001501592.1 CDS Spea_1734 NC_009901.1 2109241 2110434 R PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sat:SYN_01954 signal transduction histidine kinase; histidine kinase complement(2109241..2110434) Shewanella pealeana ATCC 700345 5662129 YP_001501593.1 CDS Spea_1735 NC_009901.1 2110589 2112115 D PFAM: sulfatase; KEGG: rle:RL1911 putative arylsulfatase; sulfatase 2110589..2112115 Shewanella pealeana ATCC 700345 5662130 YP_001501594.1 CDS Spea_1736 NC_009901.1 2112217 2113179 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pat:Patl_1662 ATPase associated with various cellular activities, AAA_3; ATPase 2112217..2113179 Shewanella pealeana ATCC 700345 5662131 YP_001501595.1 CDS Spea_1737 NC_009901.1 2113197 2114117 D KEGG: vpa:VPA0686 hypothetical protein; hypothetical protein 2113197..2114117 Shewanella pealeana ATCC 700345 5662132 YP_001501596.1 CDS Spea_1738 NC_009901.1 2114149 2114604 D hypothetical protein 2114149..2114604 Shewanella pealeana ATCC 700345 5662133 YP_001501597.1 CDS Spea_1739 NC_009901.1 2114598 2115584 D PFAM: von Willebrand factor type A; KEGG: cps:CPS_2991 von Willebrand factor type A domain protein; von Willebrand factor type A 2114598..2115584 Shewanella pealeana ATCC 700345 5662134 YP_001501598.1 CDS Spea_1740 NC_009901.1 2115577 2117271 D KEGG: vfi:VFA0904 hypothetical protein; hypothetical protein 2115577..2117271 Shewanella pealeana ATCC 700345 5662135 YP_001501599.1 CDS Spea_1741 NC_009901.1 2117271 2118509 D KEGG: pfl:PFL_2844 hypothetical protein; hypothetical protein 2117271..2118509 Shewanella pealeana ATCC 700345 5662136 YP_001501600.1 CDS Spea_1742 NC_009901.1 2118642 2119049 D hypothetical protein 2118642..2119049 Shewanella pealeana ATCC 700345 5662137 YP_001501601.1 CDS Spea_1743 NC_009901.1 2119054 2120787 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: vvy:VVA0670 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 2119054..2120787 Shewanella pealeana ATCC 700345 5662138 YP_001501602.1 CDS Spea_1744 NC_009901.1 2121344 2122039 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: son:SO_1944 hypothetical protein; 2OG-Fe(II) oxygenase 2121344..2122039 Shewanella pealeana ATCC 700345 5662139 YP_001501603.1 CDS Spea_1745 NC_009901.1 2122127 2123479 R PFAM: ATP-binding region ATPase domain protein; KEGG: sbl:Sbal_2502 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(2122127..2123479) Shewanella pealeana ATCC 700345 5662140 YP_001501604.1 CDS Spea_1746 NC_009901.1 2123470 2124144 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_2348 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2123470..2124144) Shewanella pealeana ATCC 700345 5662141 YP_001501605.1 CDS Spea_1747 NC_009901.1 2124429 2125283 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: saz:Sama_1543 putative phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2124429..2125283 Shewanella pealeana ATCC 700345 5662142 YP_001501606.1 CDS Spea_1748 NC_009901.1 2125305 2126135 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_2346 ABC transporter-related protein; ABC transporter-like protein 2125305..2126135 Shewanella pealeana ATCC 700345 5662143 YP_001501607.1 CDS Spea_1749 NC_009901.1 2126158 2127687 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2345 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2126158..2127687 Shewanella pealeana ATCC 700345 5662144 YP_001501608.1 CDS Spea_1750 NC_009901.1 2127775 2128119 R KEGG: slo:Shew_2344 hypothetical protein; hypothetical protein complement(2127775..2128119) Shewanella pealeana ATCC 700345 5662145 YP_001501609.1 CDS Spea_1751 NC_009901.1 2129017 2129367 D TIGRFAM: Phasin family protein; KEGG: ppr:PBPRB1839 hypothetical protein; phasin family protein 2129017..2129367 Shewanella pealeana ATCC 700345 5662146 YP_001501610.1 CDS Spea_1752 NC_009901.1 2129463 2131217 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: ppr:PBPRB1838 polyhydroxyalkanoic acid synthase; poly(R)-hydroxyalkanoic acid synthase 2129463..2131217 Shewanella pealeana ATCC 700345 5662147 YP_001501611.1 CDS Spea_1753 NC_009901.1 2131207 2131608 D PFAM: MaoC domain protein dehydratase; KEGG: aha:AHA_2422 enoyl-CoA hydratase; dehydratase 2131207..2131608 Shewanella pealeana ATCC 700345 5662148 YP_001501612.1 CDS Spea_1754 NC_009901.1 2132078 2132845 R KEGG: sdn:Sden_1364 hypothetical protein; hypothetical protein complement(2132078..2132845) Shewanella pealeana ATCC 700345 5662149 YP_001501613.1 CDS Spea_1755 NC_009901.1 2133239 2134972 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_2342 integral membrane sensor signal transduction histidine kinase; histidine kinase 2133239..2134972 Shewanella pealeana ATCC 700345 5662150 YP_001501614.1 CDS Spea_1756 NC_009901.1 2134969 2136321 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_2341 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator 2134969..2136321 Shewanella pealeana ATCC 700345 5662151 YP_001501615.1 CDS Spea_1757 NC_009901.1 2136378 2137022 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1462 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(2136378..2137022) Shewanella pealeana ATCC 700345 5662152 YP_001501616.1 CDS nadE NC_009901.1 2137233 2138063 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2137233..2138063 Shewanella pealeana ATCC 700345 5662153 YP_001501617.1 CDS Spea_1759 NC_009901.1 2138180 2138659 R KEGG: shw:Sputw3181_1715 hypothetical protein; hypothetical protein complement(2138180..2138659) Shewanella pealeana ATCC 700345 5662154 YP_001501618.1 CDS Spea_1760 NC_009901.1 2138746 2140185 D KEGG: sfr:Sfri_1544 lysophospholipase-like protein; lysophospholipase-like protein 2138746..2140185 Shewanella pealeana ATCC 700345 5662155 YP_001501619.1 CDS Spea_1761 NC_009901.1 2140310 2142472 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_1467 diguanylate cyclase; diguanylate cyclase complement(2140310..2142472) Shewanella pealeana ATCC 700345 5662156 YP_001501620.1 CDS Spea_1762 NC_009901.1 2142913 2143137 D KEGG: slo:Shew_2961 hypothetical protein; hypothetical protein 2142913..2143137 Shewanella pealeana ATCC 700345 5662157 YP_001501621.1 CDS Spea_1763 NC_009901.1 2143485 2145269 R PFAM: sulfatase; KEGG: shn:Shewana3_2428 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; sulfatase complement(2143485..2145269) Shewanella pealeana ATCC 700345 5664739 YP_001501622.1 CDS Spea_1764 NC_009901.1 2145353 2145568 R PFAM: protein of unknown function DUF1414; KEGG: shn:Shewana3_2427 protein of unknown function DUF1414; hypothetical protein complement(2145353..2145568) Shewanella pealeana ATCC 700345 5662159 YP_001501623.1 CDS Spea_1765 NC_009901.1 2146033 2147061 D PFAM: 37kDa nucleoid-associated protein; KEGG: slo:Shew_1472 37 kDa nucleoid-associated protein; nucleoid-associated protein NdpA 2146033..2147061 Shewanella pealeana ATCC 700345 5662160 YP_001501624.1 CDS Spea_1766 NC_009901.1 2147346 2148221 D KEGG: slo:Shew_1473 hypothetical protein; hypothetical protein 2147346..2148221 Shewanella pealeana ATCC 700345 5662161 YP_001501625.1 CDS Spea_1767 NC_009901.1 2148259 2149101 D PFAM: peptidase M23B; KEGG: slo:Shew_1474 peptidase M23B; peptidase M23B 2148259..2149101 Shewanella pealeana ATCC 700345 5662162 YP_001501626.1 CDS Spea_1768 NC_009901.1 2149178 2149684 R KEGG: slo:Shew_1636 hypothetical protein; hypothetical protein complement(2149178..2149684) Shewanella pealeana ATCC 700345 5662163 YP_001501627.1 CDS Spea_1769 NC_009901.1 2149716 2152154 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sbm:Shew185_1667 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 2149716..2152154 Shewanella pealeana ATCC 700345 5662164 YP_001501628.1 CDS Spea_1770 NC_009901.1 2152187 2154010 D KEGG: sbm:Shew185_1668 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter ATPase/inner membrane subunits MsbA 2152187..2154010 Shewanella pealeana ATCC 700345 5662165 YP_001501629.1 CDS lpxK NC_009901.1 2154011 2155003 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2154011..2155003 Shewanella pealeana ATCC 700345 5662166 YP_001501630.1 CDS Spea_1772 NC_009901.1 2155015 2155188 D PFAM: protein of unknown function DUF343; KEGG: son:SO_2800 hypothetical protein; hypothetical protein 2155015..2155188 Shewanella pealeana ATCC 700345 5662167 YP_001501631.1 CDS Spea_1773 NC_009901.1 2155634 2158717 D PFAM: Peptidase M11 gametolysin; KEGG: slo:Shew_1642 peptidase M11, gametolysin; peptidase M11 gametolysin 2155634..2158717 Shewanella pealeana ATCC 700345 5662168 YP_001501632.1 CDS Spea_1774 NC_009901.1 2158857 2161271 R KEGG: slo:Shew_1643 hypothetical protein; hypothetical protein complement(2158857..2161271) Shewanella pealeana ATCC 700345 5662169 YP_001501633.1 CDS Spea_1775 NC_009901.1 2162047 2162838 R PFAM: DSBA oxidoreductase; KEGG: slo:Shew_1644 DsbA oxidoreductase; DSBA oxidoreductase complement(2162047..2162838) Shewanella pealeana ATCC 700345 5662170 YP_001501634.1 CDS Spea_1776 NC_009901.1 2162881 2164251 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_1645 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(2162881..2164251) Shewanella pealeana ATCC 700345 5662171 YP_001501635.1 CDS Spea_1777 NC_009901.1 2164510 2166825 R KEGG: vpa:VP1135 hypothetical protein; hypothetical protein complement(2164510..2166825) Shewanella pealeana ATCC 700345 5662172 YP_001501636.1 CDS Spea_1778 NC_009901.1 2167162 2168601 R KEGG: slo:Shew_0958 hypothetical protein; hypothetical protein complement(2167162..2168601) Shewanella pealeana ATCC 700345 5662173 YP_001501637.1 CDS Spea_1779 NC_009901.1 2168876 2171953 R PFAM: acriflavin resistance protein; KEGG: slo:Shew_1647 acriflavin resistance protein; acriflavin resistance protein complement(2168876..2171953) Shewanella pealeana ATCC 700345 5662174 YP_001501638.1 CDS Spea_1780 NC_009901.1 2171950 2175258 R PFAM: acriflavin resistance protein; KEGG: slo:Shew_1648 acriflavin resistance protein; acriflavin resistance protein complement(2171950..2175258) Shewanella pealeana ATCC 700345 5662175 YP_001501639.1 CDS Spea_1781 NC_009901.1 2175365 2176471 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2175365..2176471) Shewanella pealeana ATCC 700345 5662176 YP_001501640.1 CDS Spea_1782 NC_009901.1 2176888 2176983 R KEGG: shw:Sputw3181_1734 citrate synthase I; citrate synthase I complement(2176888..2176983) Shewanella pealeana ATCC 700345 5662177 YP_001501641.1 CDS gltA NC_009901.1 2177495 2178784 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(2177495..2178784) Shewanella pealeana ATCC 700345 5662178 YP_001501642.1 CDS Spea_1784 NC_009901.1 2179217 2179591 D TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: slo:Shew_1651 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase cytochrome b556 subunit 2179217..2179591 Shewanella pealeana ATCC 700345 5662179 YP_001501643.1 CDS Spea_1785 NC_009901.1 2179579 2179932 D TIGRFAM: Succinate dehydrogenase hydrophobic membrane anchor; KEGG: shw:Sputw3181_1736 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase hydrophobic membrane anchor 2179579..2179932 Shewanella pealeana ATCC 700345 5662180 YP_001501644.1 CDS sdhA NC_009901.1 2179933 2181699 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2179933..2181699 Shewanella pealeana ATCC 700345 5662181 YP_001501645.1 CDS sdhB NC_009901.1 2181712 2182419 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2181712..2182419 Shewanella pealeana ATCC 700345 5662182 YP_001501646.1 CDS sucA NC_009901.1 2182627 2185449 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2182627..2185449 Shewanella pealeana ATCC 700345 5662183 YP_001501647.1 CDS Spea_1789 NC_009901.1 2185482 2186678 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: slo:Shew_1656 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2185482..2186678 Shewanella pealeana ATCC 700345 5662184 YP_001501648.1 CDS sucC NC_009901.1 2186757 2187923 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2186757..2187923 Shewanella pealeana ATCC 700345 5662185 YP_001501649.1 CDS Spea_1791 NC_009901.1 2187923 2188795 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sdn:Sden_2180 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 2187923..2188795 Shewanella pealeana ATCC 700345 5662186 YP_001501650.1 CDS Spea_1792 NC_009901.1 2189051 2189359 D KEGG: ppr:PBPRA2342 hypothetical protein; hypothetical protein 2189051..2189359 Shewanella pealeana ATCC 700345 5662187 YP_001501651.1 CDS Spea_1793 NC_009901.1 2189752 2190672 D PFAM: Auxin Efflux Carrier; KEGG: sfr:Sfri_2339 auxin efflux carrier; auxin efflux carrier 2189752..2190672 Shewanella pealeana ATCC 700345 5662188 YP_001501652.1 CDS Spea_1794 NC_009901.1 2190673 2192325 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: slo:Shew_1659 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(2190673..2192325) Shewanella pealeana ATCC 700345 5662189 YP_001501653.1 CDS Spea_1795 NC_009901.1 2192478 2192978 D PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_1660 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2192478..2192978 Shewanella pealeana ATCC 700345 5662190 YP_001501654.1 CDS fur NC_009901.1 2193048 2193479 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(2193048..2193479) Shewanella pealeana ATCC 700345 5662191 YP_001501655.1 CDS Spea_1797 NC_009901.1 2193748 2194473 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2193748..2194473 Shewanella pealeana ATCC 700345 5662192 YP_001501656.1 CDS Spea_1798 NC_009901.1 2194546 2195010 D KEGG: son:SO_1939 hypothetical protein; hypothetical protein 2194546..2195010 Shewanella pealeana ATCC 700345 5662193 YP_001501657.1 CDS Spea_1799 NC_009901.1 2195597 2197681 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2195597..2197681) Shewanella pealeana ATCC 700345 5662194 YP_001501658.1 CDS Spea_1800 NC_009901.1 2198094 2199434 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sdn:Sden_1657 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2198094..2199434) Shewanella pealeana ATCC 700345 5662195 YP_001501659.1 CDS Spea_1801 NC_009901.1 2199684 2200736 D KEGG: shn:Shewana3_2519 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2199684..2200736 Shewanella pealeana ATCC 700345 5662196 YP_001501660.1 CDS Spea_1802 NC_009901.1 2201013 2202206 D PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: sbm:Shew185_1752 8-amino-7-oxononanoate synthase; class I/II aminotransferase 2201013..2202206 Shewanella pealeana ATCC 700345 5662197 YP_001501661.1 CDS Spea_1803 NC_009901.1 2202291 2203061 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; type 11 methyltransferase 2202291..2203061 Shewanella pealeana ATCC 700345 5662198 YP_001501662.1 CDS Spea_1804 NC_009901.1 2203089 2203754 D KEGG: shm:Shewmr7_2428 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase 2203089..2203754 Shewanella pealeana ATCC 700345 5662199 YP_001501663.1 CDS Spea_1805 NC_009901.1 2204080 2204943 D putative metalloprotease; heat shock protein HtpX 2204080..2204943 Shewanella pealeana ATCC 700345 5662200 YP_001501664.1 CDS Spea_1806 NC_009901.1 2205206 2205580 D KEGG: slo:Shew_1724 cytochrome c3; cytochrome c3 2205206..2205580 Shewanella pealeana ATCC 700345 5662201 YP_001501665.1 CDS Spea_1807 NC_009901.1 2205895 2208810 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfr:Sfri_1505 molybdopterin oxidoreductase; molybdopterin oxidoreductase 2205895..2208810 Shewanella pealeana ATCC 700345 5662202 YP_001501666.1 CDS Spea_1808 NC_009901.1 2208785 2209759 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sfr:Sfri_1506 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2208785..2209759 Shewanella pealeana ATCC 700345 5662203 YP_001501667.1 CDS Spea_1809 NC_009901.1 2209848 2211074 D PFAM: glycosyl transferase family 3; KEGG: sfr:Sfri_1507 glycosyl transferase, family 3; glycosyl transferase family protein 2209848..2211074 Shewanella pealeana ATCC 700345 5662204 YP_001501668.1 CDS Spea_1810 NC_009901.1 2211062 2211652 D PFAM: ANTAR domain protein; KEGG: sfr:Sfri_1508 response regulator receiver and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 2211062..2211652 Shewanella pealeana ATCC 700345 5662205 YP_001501669.1 CDS Spea_1811 NC_009901.1 2212030 2214699 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sfr:Sfri_1509 nitrite reductase (NAD(P)H), large subunit; nitrite reductase (NAD(P)H) large subunit 2212030..2214699 Shewanella pealeana ATCC 700345 5662206 YP_001501670.1 CDS Spea_1812 NC_009901.1 2214696 2215076 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sfr:Sfri_1510 nitrite reductase (NAD(P)H), small subunit; nitrite reductase (NAD(P)H) small subunit 2214696..2215076 Shewanella pealeana ATCC 700345 5662207 YP_001501671.1 CDS Spea_1813 NC_009901.1 2215078 2216544 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_1511 nitrite transporter; nitrite transporter 2215078..2216544 Shewanella pealeana ATCC 700345 5662208 YP_001501672.1 CDS Spea_1814 NC_009901.1 2216549 2218339 D SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: sfr:Sfri_1512 serine/threonine protein kinase; serine/threonine protein kinase 2216549..2218339 Shewanella pealeana ATCC 700345 5662209 YP_001501673.1 CDS Spea_1815 NC_009901.1 2218439 2219581 D PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sbl:Sbal_1794 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2218439..2219581 Shewanella pealeana ATCC 700345 5662210 YP_001501674.1 CDS Spea_1816 NC_009901.1 2219874 2220425 D PFAM: Curlin associated repeat protein; KEGG: slo:Shew_1725 curlin associated repeat protein; curlin-associated protein 2219874..2220425 Shewanella pealeana ATCC 700345 5662211 YP_001501675.1 CDS Spea_1817 NC_009901.1 2220539 2221174 D PFAM: regulatory protein LuxR; KEGG: slo:Shew_1726 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2220539..2221174 Shewanella pealeana ATCC 700345 5662212 YP_001501676.1 CDS Spea_1818 NC_009901.1 2221171 2221632 D KEGG: slo:Shew_1727 hypothetical protein; hypothetical protein 2221171..2221632 Shewanella pealeana ATCC 700345 5662213 YP_001501677.1 CDS Spea_1819 NC_009901.1 2221645 2222052 D KEGG: slo:Shew_1728 curli production assembly/transport component CsgF precursor; curli production assembly/transport component CsgF 2221645..2222052 Shewanella pealeana ATCC 700345 5662214 YP_001501678.1 CDS Spea_1820 NC_009901.1 2222055 2222903 D PFAM: Curli production assembly/transport component CsgG; KEGG: slo:Shew_1729 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 2222055..2222903 Shewanella pealeana ATCC 700345 5662215 YP_001501679.1 CDS Spea_1821 NC_009901.1 2223106 2223444 D hypothetical protein 2223106..2223444 Shewanella pealeana ATCC 700345 5662216 YP_001501680.1 CDS Spea_1822 NC_009901.1 2223553 2223906 D hypothetical protein 2223553..2223906 Shewanella pealeana ATCC 700345 5662217 YP_001501681.1 CDS Spea_1823 NC_009901.1 2223974 2224387 R PFAM: regulatory protein TetR; KEGG: tfu:Tfu_2816 hypothetical protein; TetR family transcriptional regulator complement(2223974..2224387) Shewanella pealeana ATCC 700345 5662218 YP_001501682.1 CDS Spea_1824 NC_009901.1 2224584 2224940 D PFAM: histidine triad (HIT) protein; KEGG: shn:Shewana3_2507 histidine triad (HIT) protein; histidine triad (HIT) protein 2224584..2224940 Shewanella pealeana ATCC 700345 5662219 YP_001501683.1 CDS Spea_1825 NC_009901.1 2224937 2225443 D PFAM: thioesterase superfamily protein; KEGG: sbm:Shew185_1791 thioesterase superfamily protein; thioesterase superfamily protein 2224937..2225443 Shewanella pealeana ATCC 700345 5662220 YP_001501684.1 CDS Spea_1826 NC_009901.1 2225430 2225936 D PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_2505 thioesterase superfamily protein; thioesterase superfamily protein 2225430..2225936 Shewanella pealeana ATCC 700345 5662221 YP_001501685.1 CDS Spea_1827 NC_009901.1 2225993 2226382 D PFAM: protein of unknown function DUF1425; KEGG: slo:Shew_1734 protein of unknown function DUF1425; hypothetical protein 2225993..2226382 Shewanella pealeana ATCC 700345 5662222 YP_001501686.1 CDS Spea_1828 NC_009901.1 2226691 2228829 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_1735 TonB-dependent receptor; TonB-dependent receptor 2226691..2228829 Shewanella pealeana ATCC 700345 5662223 YP_001501687.1 CDS Spea_1829 NC_009901.1 2228890 2229150 D KEGG: sfr:Sfri_1527 hypothetical protein; hypothetical protein 2228890..2229150 Shewanella pealeana ATCC 700345 5662224 YP_001501688.1 CDS Spea_1830 NC_009901.1 2229271 2229933 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: sbl:Sbal_1804 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 2229271..2229933 Shewanella pealeana ATCC 700345 5662225 YP_001501689.1 CDS Spea_1831 NC_009901.1 2229934 2230995 D PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: slo:Shew_1738 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2229934..2230995 Shewanella pealeana ATCC 700345 5662226 YP_001501690.1 CDS Spea_1832 NC_009901.1 2231316 2231909 D PFAM: DoxX family protein; KEGG: shn:Shewana3_2495 DoxX family protein; DoxX family protein 2231316..2231909 Shewanella pealeana ATCC 700345 5662227 YP_001501691.1 CDS Spea_1833 NC_009901.1 2232132 2232680 D PFAM: nitroreductase; KEGG: spc:Sputcn32_1665 nitroreductase; nitroreductase 2232132..2232680 Shewanella pealeana ATCC 700345 5662228 YP_001501692.1 CDS Spea_1834 NC_009901.1 2232804 2233403 D KEGG: slo:Shew_1744 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2232804..2233403 Shewanella pealeana ATCC 700345 5662229 YP_001501693.1 CDS Spea_1835 NC_009901.1 2233617 2234021 D KEGG: sbl:Sbal_1813 hypothetical protein; hypothetical protein 2233617..2234021 Shewanella pealeana ATCC 700345 5662230 YP_001501694.1 CDS Spea_1836 NC_009901.1 2234294 2234683 D KEGG: slo:Shew_1747 hypothetical protein; hypothetical protein 2234294..2234683 Shewanella pealeana ATCC 700345 5662231 YP_001501695.1 CDS Spea_1837 NC_009901.1 2235133 2235819 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein; ABC transporter-like protein 2235133..2235819 Shewanella pealeana ATCC 700345 5662232 YP_001501696.1 CDS Spea_1838 NC_009901.1 2235809 2236900 D KEGG: saz:Sama_1469 multidrug resistance efflux pump-like protein; multidrug resistance efflux pump-like protein 2235809..2236900 Shewanella pealeana ATCC 700345 5662233 YP_001501697.1 CDS Spea_1839 NC_009901.1 2236897 2238063 D KEGG: saz:Sama_1470 membrane-fusion protein; membrane-fusion protein 2236897..2238063 Shewanella pealeana ATCC 700345 5662234 YP_001501698.1 CDS Spea_1840 NC_009901.1 2238060 2239349 D KEGG: saz:Sama_1471 membrane-fusion protein; membrane-fusion protein 2238060..2239349 Shewanella pealeana ATCC 700345 5662235 YP_001501699.1 CDS Spea_1841 NC_009901.1 2239346 2240659 D PFAM: protein of unknown function DUF214; KEGG: saz:Sama_1472 ABC transporter permease protein; hypothetical protein 2239346..2240659 Shewanella pealeana ATCC 700345 5662236 YP_001501700.1 CDS Spea_1842 NC_009901.1 2240933 2241559 D PFAM: Ion transport 2 domain protein; KEGG: ppr:PBPRA1561 hypothetical protein; Ion transport 2 domain-containing protein 2240933..2241559 Shewanella pealeana ATCC 700345 5662237 YP_001501701.1 CDS Spea_1843 NC_009901.1 2241570 2242721 D PFAM: protein of unknown function UPF0118; KEGG: ppr:PBPRA1562 hypothetical protein; hypothetical protein 2241570..2242721 Shewanella pealeana ATCC 700345 5662238 YP_001501702.1 CDS Spea_1844 NC_009901.1 2243350 2244402 D KEGG: spc:Sputcn32_1619 hypothetical protein; hypothetical protein 2243350..2244402 Shewanella pealeana ATCC 700345 5662239 YP_001501703.1 CDS Spea_1845 NC_009901.1 2244402 2245556 D KEGG: sbm:Shew185_1809 hypothetical protein; hypothetical protein 2244402..2245556 Shewanella pealeana ATCC 700345 5662240 YP_001501704.1 CDS Spea_1846 NC_009901.1 2245546 2246046 D KEGG: sbl:Sbal_1818 hypothetical protein; hypothetical protein 2245546..2246046 Shewanella pealeana ATCC 700345 5662241 YP_001501705.1 CDS Spea_1847 NC_009901.1 2246629 2246949 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_2168 uncharacterized conserved protein UCP025560; hypothetical protein complement(2246629..2246949) Shewanella pealeana ATCC 700345 5662242 YP_001501706.1 CDS Spea_1848 NC_009901.1 2246974 2247174 R KEGG: shn:Shewana3_1844 hypothetical protein; hypothetical protein complement(2246974..2247174) Shewanella pealeana ATCC 700345 5662243 YP_001501707.1 CDS Spea_1849 NC_009901.1 2247286 2250600 R KEGG: sbl:Sbal_2434 hypothetical protein; hypothetical protein complement(2247286..2250600) Shewanella pealeana ATCC 700345 5662244 YP_001501708.1 CDS Spea_1850 NC_009901.1 2250740 2251738 R KEGG: sco:SCO7159 integral membrane protein; hypothetical protein complement(2250740..2251738) Shewanella pealeana ATCC 700345 5662245 YP_001501709.1 CDS Spea_1851 NC_009901.1 2252105 2252950 R PFAM: Aldose 1-epimerase; KEGG: sbm:Shew185_1722 aldose 1-epimerase; aldose 1-epimerase complement(2252105..2252950) Shewanella pealeana ATCC 700345 5662246 YP_001501710.1 CDS Spea_1852 NC_009901.1 2253169 2254959 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sfr:Sfri_2744 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2253169..2254959 Shewanella pealeana ATCC 700345 5662247 YP_001501711.1 CDS Spea_1853 NC_009901.1 2255283 2255975 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 2255283..2255975 Shewanella pealeana ATCC 700345 5662248 YP_001501712.1 CDS Spea_1854 NC_009901.1 2256000 2256611 R PFAM: protein of unknown function DUF938; Methyltransferase type 12; KEGG: slo:Shew_2163 protein of unknown function DUF938; hypothetical protein complement(2256000..2256611) Shewanella pealeana ATCC 700345 5662249 YP_001501713.1 CDS Spea_1855 NC_009901.1 2256743 2257108 D KEGG: pin:Ping_2410 hypothetical protein; hypothetical protein 2256743..2257108 Shewanella pealeana ATCC 700345 5662250 YP_001501714.1 CDS Spea_1856 NC_009901.1 2257188 2257484 D KEGG: mmw:Mmwyl1_1485 putative transcriptional regulator, Fis family protein; putative Fis family transcriptional regulator 2257188..2257484 Shewanella pealeana ATCC 700345 5662251 YP_001501715.1 CDS Spea_1857 NC_009901.1 2257913 2260102 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_2161 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp complement(2257913..2260102) Shewanella pealeana ATCC 700345 5662252 YP_001501716.1 CDS Spea_1858 NC_009901.1 2260562 2262001 R KEGG: ppr:PBPRB1968 hypothetical protein; hypothetical protein complement(2260562..2262001) Shewanella pealeana ATCC 700345 5662253 YP_001501717.1 CDS Spea_1859 NC_009901.1 2263272 2263901 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 2263272..2263901 Shewanella pealeana ATCC 700345 5662254 YP_001501718.1 CDS Spea_1860 NC_009901.1 2264244 2265818 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: slo:Shew_2159 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 2264244..2265818 Shewanella pealeana ATCC 700345 5662255 YP_001501719.1 CDS Spea_1861 NC_009901.1 2266076 2267017 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_3322 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein complement(2266076..2267017) Shewanella pealeana ATCC 700345 5662256 YP_001501720.1 CDS Spea_1862 NC_009901.1 2268123 2270522 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3314 TonB-dependent receptor; TonB-dependent receptor plug 2268123..2270522 Shewanella pealeana ATCC 700345 5662257 YP_001501721.1 CDS rihA NC_009901.1 2270984 2271952 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(2270984..2271952) Shewanella pealeana ATCC 700345 5662258 YP_001501722.1 CDS Spea_1864 NC_009901.1 2272206 2274005 R KEGG: sbm:Shew185_2658 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(2272206..2274005) Shewanella pealeana ATCC 700345 5662259 YP_001501723.1 CDS Spea_1865 NC_009901.1 2274200 2275420 D PFAM: protein of unknown function DUF482; KEGG: sfr:Sfri_2329 protein of unknown function DUF482; hypothetical protein 2274200..2275420 Shewanella pealeana ATCC 700345 5662260 YP_001501724.1 CDS Spea_1866 NC_009901.1 2275491 2275817 R hypothetical protein complement(2275491..2275817) Shewanella pealeana ATCC 700345 5662261 YP_001501725.1 CDS Spea_1867 NC_009901.1 2275913 2276248 R hypothetical protein complement(2275913..2276248) Shewanella pealeana ATCC 700345 5662262 YP_001501726.1 CDS Spea_1868 NC_009901.1 2276507 2276884 R KEGG: saz:Sama_2872 hypothetical protein; hypothetical protein complement(2276507..2276884) Shewanella pealeana ATCC 700345 5662263 YP_001501727.1 CDS Spea_1869 NC_009901.1 2276940 2277560 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbl:Sbal_2618 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(2276940..2277560) Shewanella pealeana ATCC 700345 5662264 YP_001501728.1 CDS Spea_1870 NC_009901.1 2278702 2279517 D KEGG: spc:Sputcn32_0179 hypothetical protein; hypothetical protein 2278702..2279517 Shewanella pealeana ATCC 700345 5662265 YP_001501729.1 CDS Spea_1871 NC_009901.1 2279689 2281341 D PFAM: protein of unknown function DUF87; KEGG: mca:MCA1687 hypothetical protein; hypothetical protein 2279689..2281341 Shewanella pealeana ATCC 700345 5662266 YP_001501730.1 CDS Spea_1872 NC_009901.1 2281416 2283173 D KEGG: sbm:Shew185_2659 ATP-dependent endonuclease of the OLD family; hypothetical protein 2281416..2283173 Shewanella pealeana ATCC 700345 5662267 YP_001501731.1 CDS Spea_1873 NC_009901.1 2283981 2285021 R KEGG: shw:Sputw3181_2355 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(2283981..2285021) Shewanella pealeana ATCC 700345 5662268 YP_001501732.1 CDS Spea_1874 NC_009901.1 2285111 2286271 R PFAM: homogentisate 12-dioxygenase; KEGG: sfr:Sfri_2326 homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase complement(2285111..2286271) Shewanella pealeana ATCC 700345 5662269 YP_001501733.1 CDS Spea_1875 NC_009901.1 2286427 2287326 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2153 transcriptional regulator, LysR family; LysR family transcriptional regulator 2286427..2287326 Shewanella pealeana ATCC 700345 5662270 YP_001501734.1 CDS Spea_1876 NC_009901.1 2287728 2288087 D KEGG: slo:Shew_2151 hypothetical protein; hypothetical protein 2287728..2288087 Shewanella pealeana ATCC 700345 5662271 YP_001501735.1 CDS Spea_1877 NC_009901.1 2288240 2289232 R PFAM: Di-haem cytochrome c peroxidase; KEGG: shm:Shewmr7_2292 cytochrome-c peroxidase; cytochrome-c peroxidase complement(2288240..2289232) Shewanella pealeana ATCC 700345 5662272 YP_001501736.1 CDS Spea_1878 NC_009901.1 2289486 2289716 R KEGG: slo:Shew_2150 integral membrane protein TerC; integral membrane protein TerC complement(2289486..2289716) Shewanella pealeana ATCC 700345 5662273 YP_001501737.1 CDS Spea_1879 NC_009901.1 2289976 2290767 D KEGG: slo:Shew_2149 conserved hypothetical ABC transporter protein; ABC transporter 2289976..2290767 Shewanella pealeana ATCC 700345 5662274 YP_001501738.1 CDS Spea_1880 NC_009901.1 2290918 2291757 D PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_3018 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2290918..2291757 Shewanella pealeana ATCC 700345 5662275 YP_001501739.1 CDS Spea_1881 NC_009901.1 2291767 2292174 R PFAM: protein of unknown function DUF307; KEGG: son:SO_1977 hypothetical protein; hypothetical protein complement(2291767..2292174) Shewanella pealeana ATCC 700345 5662276 YP_001501740.1 CDS Spea_1882 NC_009901.1 2292552 2293469 D KEGG: son:SO_1978 hypothetical protein; hypothetical protein 2292552..2293469 Shewanella pealeana ATCC 700345 5662277 YP_001501741.1 CDS Spea_1883 NC_009901.1 2293491 2293634 D KEGG: slo:Shew_2147 hypothetical protein; hypothetical protein 2293491..2293634 Shewanella pealeana ATCC 700345 5662278 YP_001501742.1 CDS Spea_1884 NC_009901.1 2294204 2294377 R KEGG: shn:Shewana3_2467 hypothetical protein; hypothetical protein complement(2294204..2294377) Shewanella pealeana ATCC 700345 5662279 YP_001501743.1 CDS Spea_1885 NC_009901.1 2294882 2295772 D KEGG: slo:Shew_2145 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2294882..2295772 Shewanella pealeana ATCC 700345 5662280 YP_001501744.1 CDS Spea_1886 NC_009901.1 2296140 2296709 R hypothetical protein complement(2296140..2296709) Shewanella pealeana ATCC 700345 5662281 YP_001501745.1 CDS Spea_1887 NC_009901.1 2296792 2297622 R e14 prophage; cell death peptidase; inhibitor of T4 late gene expression; late inhibitor of T4; phage exclusion protein Lit complement(2296792..2297622) Shewanella pealeana ATCC 700345 5662282 YP_001501746.1 CDS Spea_1888 NC_009901.1 2297800 2298582 R KEGG: aba:Acid345_3545 hypothetical protein; hypothetical protein complement(2297800..2298582) Shewanella pealeana ATCC 700345 5662283 YP_001501747.1 CDS Spea_1890 NC_009901.1 2298749 2299174 R hypothetical protein complement(2298749..2299174) Shewanella pealeana ATCC 700345 5664740 YP_001501748.1 CDS Spea_1891 NC_009901.1 2299645 2299851 R PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein; XRE family transcriptional regulator complement(2299645..2299851) Shewanella pealeana ATCC 700345 5662285 YP_001501749.1 CDS Spea_1892 NC_009901.1 2299980 2300519 D KEGG: sbm:Shew185_4272 hypothetical protein; hypothetical protein 2299980..2300519 Shewanella pealeana ATCC 700345 5662286 YP_001501750.1 CDS Spea_1893 NC_009901.1 2300525 2301943 D PFAM: helicase domain protein; type III restriction protein res subunit; KEGG: sbm:Shew185_4273 type III restriction protein res subunit; type III restriction protein res subunit 2300525..2301943 Shewanella pealeana ATCC 700345 5662287 YP_001501751.1 CDS Spea_1894 NC_009901.1 2302098 2302910 R KEGG: shn:Shewana3_1253 hypothetical protein; hypothetical protein complement(2302098..2302910) Shewanella pealeana ATCC 700345 5662288 YP_001501752.1 CDS Spea_1895 NC_009901.1 2303250 2303528 R hypothetical protein complement(2303250..2303528) Shewanella pealeana ATCC 700345 5662289 YP_001501753.1 CDS Spea_1896 NC_009901.1 2304868 2305251 R hypothetical protein complement(2304868..2305251) Shewanella pealeana ATCC 700345 5662290 YP_001501754.1 CDS Spea_1897 NC_009901.1 2305253 2307295 R PFAM: integrase family protein; KEGG: vch:VC0183 hypothetical protein; integrase family protein complement(2305253..2307295) Shewanella pealeana ATCC 700345 5662291 YP_001501755.1 CDS Spea_1898 NC_009901.1 2307295 2309985 R hypothetical protein complement(2307295..2309985) Shewanella pealeana ATCC 700345 5662292 YP_001501756.1 CDS Spea_1899 NC_009901.1 2309986 2311365 R PFAM: integrase family protein; KEGG: spc:Sputcn32_0163 hypothetical protein; integrase family protein complement(2309986..2311365) Shewanella pealeana ATCC 700345 5662293 YP_001501757.1 CDS Spea_1900 NC_009901.1 2311491 2312213 D PFAM: MscS Mechanosensitive ion channel; KEGG: saz:Sama_1578 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 2311491..2312213 Shewanella pealeana ATCC 700345 5662294 YP_001501758.1 CDS Spea_1901 NC_009901.1 2312303 2313247 D PFAM: response regulator receiver; CheW domain protein; KEGG: shn:Shewana3_2462 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein 2312303..2313247 Shewanella pealeana ATCC 700345 5662295 YP_001501759.1 CDS Spea_1902 NC_009901.1 2313309 2313953 R KEGG: sbl:Sbal_2593 hypothetical protein; hypothetical protein complement(2313309..2313953) Shewanella pealeana ATCC 700345 5662296 YP_001501760.1 CDS Spea_1903 NC_009901.1 2314040 2314399 R KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein complement(2314040..2314399) Shewanella pealeana ATCC 700345 5662297 YP_001501761.1 CDS Spea_1904 NC_009901.1 2314764 2315954 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase 2314764..2315954 Shewanella pealeana ATCC 700345 5662298 YP_001501762.1 CDS Spea_1905 NC_009901.1 2316083 2316565 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_2139 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2316083..2316565 Shewanella pealeana ATCC 700345 5662299 YP_001501763.1 CDS Spea_1906 NC_009901.1 2316639 2316857 D KEGG: slo:Shew_2138 hypothetical protein; hypothetical protein 2316639..2316857 Shewanella pealeana ATCC 700345 5662300 YP_001501764.1 CDS Spea_1907 NC_009901.1 2316970 2317650 D PFAM: phospholipase/Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase 2316970..2317650 Shewanella pealeana ATCC 700345 5662301 YP_001501765.1 CDS ushA NC_009901.1 2318021 2319739 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 2318021..2319739 Shewanella pealeana ATCC 700345 5662302 YP_001501766.1 CDS Spea_1909 NC_009901.1 2320035 2320475 D PFAM: heat shock protein Hsp20; KEGG: slo:Shew_2134 heat shock protein HSP20; heat shock protein Hsp20 2320035..2320475 Shewanella pealeana ATCC 700345 5662303 YP_001501767.1 CDS Spea_1910 NC_009901.1 2320555 2321049 R TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: sdn:Sden_2123 acetolactate synthase, small subunit; acetolactate synthase small subunit complement(2320555..2321049) Shewanella pealeana ATCC 700345 5662304 YP_001501768.1 CDS Spea_1911 NC_009901.1 2321049 2322770 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: slo:Shew_1776 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit complement(2321049..2322770) Shewanella pealeana ATCC 700345 5662305 YP_001501769.1 CDS Spea_1912 NC_009901.1 2323131 2324357 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_1777 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(2323131..2324357) Shewanella pealeana ATCC 700345 5662306 YP_001501770.1 CDS Spea_1913 NC_009901.1 2325153 2325497 R KEGG: slo:Shew_1571 hypothetical protein; hypothetical protein complement(2325153..2325497) Shewanella pealeana ATCC 700345 5662307 YP_001501771.1 CDS Spea_1914 NC_009901.1 2325746 2326498 D PFAM: protein of unknown function DUF34; KEGG: shw:Sputw3181_1787 protein of unknown function DUF34; hypothetical protein 2325746..2326498 Shewanella pealeana ATCC 700345 5662308 YP_001501772.1 CDS Spea_1915 NC_009901.1 2326597 2326995 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 2326597..2326995 Shewanella pealeana ATCC 700345 5662309 YP_001501773.1 CDS Spea_1916 NC_009901.1 2327079 2327831 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 2327079..2327831 Shewanella pealeana ATCC 700345 5662310 YP_001501774.1 CDS metG NC_009901.1 2327899 2329938 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2327899..2329938) Shewanella pealeana ATCC 700345 5662311 YP_001501775.1 CDS Spea_1918 NC_009901.1 2330099 2331214 D KEGG: slo:Shew_1574 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 2330099..2331214 Shewanella pealeana ATCC 700345 5662312 YP_001501776.1 CDS Spea_1919 NC_009901.1 2331226 2331861 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2331226..2331861 Shewanella pealeana ATCC 700345 5662313 YP_001501777.1 CDS Spea_1920 NC_009901.1 2331896 2332117 D KEGG: sbm:Shew185_2455 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 2331896..2332117 Shewanella pealeana ATCC 700345 5662314 YP_001501778.1 CDS Spea_1921 NC_009901.1 2332117 2333019 D PFAM: aminotransferase class IV; KEGG: shw:Sputw3181_1793 aminotransferase, class IV; aminodeoxychorismate lyase 2332117..2333019 Shewanella pealeana ATCC 700345 5662315 YP_001501779.1 CDS Spea_1922 NC_009901.1 2333016 2334023 D PFAM: aminodeoxychorismate lyase; KEGG: slo:Shew_1578 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2333016..2334023 Shewanella pealeana ATCC 700345 5662316 YP_001501780.1 CDS tmk NC_009901.1 2334020 2334664 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2334020..2334664 Shewanella pealeana ATCC 700345 5662317 YP_001501781.1 CDS Spea_1924 NC_009901.1 2334666 2335583 D TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: slo:Shew_1580 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 2334666..2335583 Shewanella pealeana ATCC 700345 5662318 YP_001501782.1 CDS Spea_1925 NC_009901.1 2335590 2335916 D KEGG: shw:Sputw3181_1797 type IV pilus biogenesis protein PilZ; type IV pilus biogenesis protein PilZ 2335590..2335916 Shewanella pealeana ATCC 700345 5662319 YP_001501783.1 CDS Spea_1926 NC_009901.1 2335962 2336750 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shn:Shewana3_1769 hydrolase, TatD family; TatD family hydrolase 2335962..2336750 Shewanella pealeana ATCC 700345 5662320 YP_001501784.1 CDS yebU NC_009901.1 2336976 2338442 R in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF complement(2336976..2338442) Shewanella pealeana ATCC 700345 5662321 YP_001501785.1 CDS Spea_1928 NC_009901.1 2338532 2339758 D PFAM: nucleoside recognition domain protein; KEGG: slo:Shew_1584 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 2338532..2339758 Shewanella pealeana ATCC 700345 5662322 YP_001501786.1 CDS Spea_1929 NC_009901.1 2339909 2342539 R PFAM: Mammalian cell entry related domain protein; KEGG: she:Shewmr4_1667 mammalian cell entry related domain protein; hypothetical protein complement(2339909..2342539) Shewanella pealeana ATCC 700345 5662323 YP_001501787.1 CDS Spea_1930 NC_009901.1 2342517 2343158 R PFAM: Paraquat-inducible protein A; KEGG: shw:Sputw3181_1802 paraquat-inducible protein A; paraquat-inducible protein A complement(2342517..2343158) Shewanella pealeana ATCC 700345 5662324 YP_001501788.1 CDS Spea_1931 NC_009901.1 2343148 2343777 R PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1744 paraquat-inducible protein A; paraquat-inducible protein A complement(2343148..2343777) Shewanella pealeana ATCC 700345 5662325 YP_001501789.1 CDS Spea_1932 NC_009901.1 2343962 2344252 D PFAM: YebG family protein; KEGG: slo:Shew_1799 YebG family protein; hypothetical protein 2343962..2344252 Shewanella pealeana ATCC 700345 5662326 YP_001501790.1 CDS Spea_1933 NC_009901.1 2344337 2344795 D PFAM: GAF domain protein; KEGG: shw:Sputw3181_1805 putative GAF sensor protein; putative GAF sensor protein 2344337..2344795 Shewanella pealeana ATCC 700345 5662327 YP_001501791.1 CDS Spea_1934 NC_009901.1 2345083 2345721 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2345083..2345721 Shewanella pealeana ATCC 700345 5662328 YP_001501792.1 CDS Spea_1935 NC_009901.1 2345755 2347800 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2345755..2347800 Shewanella pealeana ATCC 700345 5662329 YP_001501793.1 CDS pepN NC_009901.1 2347873 2350434 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: slo:Shew_1803 aminopeptidase N; aminopeptidase N 2347873..2350434 Shewanella pealeana ATCC 700345 5662330 YP_001501794.1 CDS Spea_1937 NC_009901.1 2350522 2350752 D KEGG: slo:Shew_1804 hypothetical protein; hypothetical protein 2350522..2350752 Shewanella pealeana ATCC 700345 5662331 YP_001501795.1 CDS Spea_1938 NC_009901.1 2351070 2353118 D PFAM: protein of unknown function DUF1302; KEGG: slo:Shew_1805 protein of unknown function DUF1302; hypothetical protein 2351070..2353118 Shewanella pealeana ATCC 700345 5662332 YP_001501796.1 CDS Spea_1939 NC_009901.1 2353138 2354502 D PFAM: protein of unknown function DUF1329; KEGG: slo:Shew_1806 protein of unknown function DUF1329; hypothetical protein 2353138..2354502 Shewanella pealeana ATCC 700345 5662333 YP_001501797.1 CDS Spea_1940 NC_009901.1 2354556 2355572 D KEGG: sfr:Sfri_2223 BNR repeat protein; BNR repeat-containing protein 2354556..2355572 Shewanella pealeana ATCC 700345 5662334 YP_001501798.1 CDS Spea_1941 NC_009901.1 2355585 2357888 D PFAM: Patched family protein; KEGG: slo:Shew_1808 hypothetical protein; hypothetical protein 2355585..2357888 Shewanella pealeana ATCC 700345 5662335 YP_001501799.1 CDS Spea_1942 NC_009901.1 2358150 2362994 D PFAM: NAD-glutamate dehydrogenase; KEGG: slo:Shew_1809 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 2358150..2362994 Shewanella pealeana ATCC 700345 5662336 YP_001501800.1 CDS Spea_1943 NC_009901.1 2363054 2364073 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2363054..2364073 Shewanella pealeana ATCC 700345 5662337 YP_001501801.1 CDS Spea_1944 NC_009901.1 2364247 2364786 D PFAM: protein of unknown function DUF1379; KEGG: slo:Shew_1811 protein of unknown function DUF1379; hypothetical protein 2364247..2364786 Shewanella pealeana ATCC 700345 5662338 YP_001501802.1 CDS Spea_1945 NC_009901.1 2365103 2365708 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2365103..2365708) Shewanella pealeana ATCC 700345 5662339 YP_001501803.1 CDS rlmL NC_009901.1 2366975 2369110 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 2366975..2369110 Shewanella pealeana ATCC 700345 5664744 YP_001501804.1 CDS Spea_1947 NC_009901.1 2369100 2369336 D PFAM: glutaredoxin 2; KEGG: son:SO_1852 hypothetical protein; glutaredoxin 2369100..2369336 Shewanella pealeana ATCC 700345 5662341 YP_001501805.1 CDS Spea_1948 NC_009901.1 2369338 2371275 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 2369338..2371275 Shewanella pealeana ATCC 700345 5662342 YP_001501806.1 CDS Spea_1949 NC_009901.1 2371305 2373161 D KEGG: shn:Shewana3_1604 hypothetical protein; hypothetical protein 2371305..2373161 Shewanella pealeana ATCC 700345 5662343 YP_001501807.1 CDS Spea_1950 NC_009901.1 2373357 2373533 D PFAM: ribosome modulation factor; KEGG: slo:Shew_1816 ribosome modulation factor; ribosome modulation factor 2373357..2373533 Shewanella pealeana ATCC 700345 5662344 YP_001501808.1 CDS Spea_1951 NC_009901.1 2373668 2374183 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(2373668..2374183) Shewanella pealeana ATCC 700345 5662345 YP_001501809.1 CDS Spea_1952 NC_009901.1 2374251 2375963 R PFAM: peptidase S16 lon domain protein; KEGG: son:SO_1857 hypothetical ATP-dependent protease; peptidase S16 lon domain-containing protein complement(2374251..2375963) Shewanella pealeana ATCC 700345 5662346 YP_001501810.1 CDS Spea_1953 NC_009901.1 2376525 2377169 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2376525..2377169 Shewanella pealeana ATCC 700345 5664745 YP_001501811.1 CDS uvrC NC_009901.1 2377189 2379018 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2377189..2379018 Shewanella pealeana ATCC 700345 5662348 YP_001501812.1 CDS Spea_1955 NC_009901.1 2379066 2379614 D KEGG: slo:Shew_1826 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2379066..2379614 Shewanella pealeana ATCC 700345 5662349 YP_001501813.1 CDS Spea_1956 NC_009901.1 2380631 2381200 D KEGG: son:SO_4159 hypothetical protein; hypothetical protein 2380631..2381200 Shewanella pealeana ATCC 700345 5664748 YP_001501814.1 CDS Spea_1957 NC_009901.1 2381364 2382719 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: slo:Shew_1828 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain-containing protein 2381364..2382719 Shewanella pealeana ATCC 700345 5662351 YP_001501815.1 CDS Spea_1958 NC_009901.1 2382849 2383397 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: shw:Sputw3181_2115 protein of unknown function DUF882; hypothetical protein 2382849..2383397 Shewanella pealeana ATCC 700345 5662352 YP_001501816.1 CDS Spea_1959 NC_009901.1 2383547 2383834 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2383547..2383834 Shewanella pealeana ATCC 700345 5662353 YP_001501817.1 CDS Spea_1960 NC_009901.1 2383910 2385424 R PFAM: SpoVR family protein; KEGG: slo:Shew_1831 SpoVR family protein; SpoVR family protein complement(2383910..2385424) Shewanella pealeana ATCC 700345 5662354 YP_001501818.1 CDS Spea_1961 NC_009901.1 2385434 2386702 R PFAM: protein of unknown function DUF444; KEGG: slo:Shew_1832 protein of unknown function DUF444; hypothetical protein complement(2385434..2386702) Shewanella pealeana ATCC 700345 5662355 YP_001501819.1 CDS Spea_1962 NC_009901.1 2386754 2388688 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: slo:Shew_1833 putative serine protein kinase, PrkA; putative serine protein kinase PrkA complement(2386754..2388688) Shewanella pealeana ATCC 700345 5662356 YP_001501820.1 CDS Spea_1963 NC_009901.1 2388916 2389500 R PFAM: manganese and iron superoxide dismutase; KEGG: spc:Sputcn32_1687 superoxide dismutase; superoxide dismutase complement(2388916..2389500) Shewanella pealeana ATCC 700345 5662357 YP_001501821.1 CDS Spea_1964 NC_009901.1 2389726 2390067 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: slo:Shew_1835 glutaredoxin-like protein; glutaredoxin-like protein 2389726..2390067 Shewanella pealeana ATCC 700345 5662358 YP_001501822.1 CDS Spea_1965 NC_009901.1 2390178 2391434 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: slo:Shew_1836 uracil-xanthine permease; uracil-xanthine permease complement(2390178..2391434) Shewanella pealeana ATCC 700345 5662359 YP_001501823.1 CDS Spea_1966 NC_009901.1 2391611 2392723 D KEGG: slo:Shew_1837 hypothetical protein; hypothetical protein 2391611..2392723 Shewanella pealeana ATCC 700345 5662360 YP_001501824.1 CDS Spea_1967 NC_009901.1 2392797 2393507 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2392797..2393507 Shewanella pealeana ATCC 700345 5662361 YP_001501825.1 CDS Spea_1968 NC_009901.1 2393609 2395546 R KEGG: sbl:Sbal_1787 hypothetical protein; hypothetical protein complement(2393609..2395546) Shewanella pealeana ATCC 700345 5662362 YP_001501826.1 CDS Spea_1969 NC_009901.1 2395719 2396090 R KEGG: shm:Shewmr7_2421 hypothetical protein; hypothetical protein complement(2395719..2396090) Shewanella pealeana ATCC 700345 5662363 YP_001501827.1 CDS Spea_1970 NC_009901.1 2396103 2396453 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sbm:Shew185_1782 arsenate reductase; arsenate reductase complement(2396103..2396453) Shewanella pealeana ATCC 700345 5662364 YP_001501828.1 CDS Spea_1971 NC_009901.1 2396527 2397987 R PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: sbm:Shew185_1783 peptidase M48 Ste24p; peptidase M48 Ste24p complement(2396527..2397987) Shewanella pealeana ATCC 700345 5662365 YP_001501829.1 CDS Spea_1972 NC_009901.1 2398099 2398314 D PFAM: SirA family protein; KEGG: sdn:Sden_1648 hypothetical protein; SirA family protein 2398099..2398314 Shewanella pealeana ATCC 700345 5662366 YP_001501830.1 CDS Spea_1973 NC_009901.1 2398405 2399514 D PFAM: protein of unknown function UPF0118; KEGG: slo:Shew_1843 protein of unknown function UPF0118; hypothetical protein 2398405..2399514 Shewanella pealeana ATCC 700345 5662367 YP_001501831.1 CDS Spea_1974 NC_009901.1 2400010 2400900 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(2400010..2400900) Shewanella pealeana ATCC 700345 5662368 YP_001501832.1 CDS Spea_1975 NC_009901.1 2401029 2401643 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1845 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 2401029..2401643 Shewanella pealeana ATCC 700345 5662369 YP_001501833.1 CDS Spea_1976 NC_009901.1 2401724 2402107 D KEGG: sfr:Sfri_3563 transposase; transposase 2401724..2402107 Shewanella pealeana ATCC 700345 5662370 YP_001501834.1 CDS Spea_1977 NC_009901.1 2402224 2402952 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit 2402224..2402952 Shewanella pealeana ATCC 700345 5662371 YP_001501835.1 CDS Spea_1978 NC_009901.1 2402985 2403455 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO_1877 bacterioferritin comigratory protein; alkyl hydroperoxide reductase complement(2402985..2403455) Shewanella pealeana ATCC 700345 5662372 YP_001501836.1 CDS Spea_1979 NC_009901.1 2403476 2404012 R PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_1847 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(2403476..2404012) Shewanella pealeana ATCC 700345 5662373 YP_001501837.1 CDS Spea_1980 NC_009901.1 2404254 2405138 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2404254..2405138 Shewanella pealeana ATCC 700345 5662374 YP_001501838.1 CDS Spea_1981 NC_009901.1 2405142 2406239 D PFAM: NlpBDapX family lipoprotein; KEGG: slo:Shew_1849 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein 2405142..2406239 Shewanella pealeana ATCC 700345 5662375 YP_001501839.1 CDS Spea_1982 NC_009901.1 2406610 2407692 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2406610..2407692 Shewanella pealeana ATCC 700345 5662376 YP_001501840.1 CDS Spea_1983 NC_009901.1 2407689 2410793 D PFAM: acriflavin resistance protein; KEGG: slo:Shew_1852 acriflavin resistance protein; acriflavin resistance protein 2407689..2410793 Shewanella pealeana ATCC 700345 5662377 YP_001501841.1 CDS Spea_1984 NC_009901.1 2410860 2411099 R KEGG: son:SO_2479 hypothetical protein; hypothetical protein complement(2410860..2411099) Shewanella pealeana ATCC 700345 5662378 YP_001501842.1 CDS Spea_1985 NC_009901.1 2411113 2411850 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2411113..2411850) Shewanella pealeana ATCC 700345 5662379 YP_001501843.1 CDS Spea_1988 NC_009901.1 2412852 2413466 R PFAM: carbonic anhydrase; KEGG: slo:Shew_1859 carbonate dehydratase; carbonate dehydratase complement(2412852..2413466) Shewanella pealeana ATCC 700345 5662381 YP_001501844.1 CDS Spea_1989 NC_009901.1 2413711 2414565 R PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_2123 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2413711..2414565) Shewanella pealeana ATCC 700345 5662382 YP_001501845.1 CDS Spea_1990 NC_009901.1 2414614 2415192 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: slo:Shew_1861 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(2414614..2415192) Shewanella pealeana ATCC 700345 5662383 YP_001501846.1 CDS Spea_1991 NC_009901.1 2415285 2416430 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2415285..2416430) Shewanella pealeana ATCC 700345 5662384 YP_001501847.1 CDS Spea_1992 NC_009901.1 2416427 2416807 R PFAM: arsenate reductase and related; KEGG: sfr:Sfri_1766 hypothetical protein; arsenate reductase-like protein complement(2416427..2416807) Shewanella pealeana ATCC 700345 5662385 YP_001501848.1 CDS Spea_1993 NC_009901.1 2416942 2417451 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(2416942..2417451) Shewanella pealeana ATCC 700345 5662386 YP_001501849.1 CDS Spea_1994 NC_009901.1 2417516 2419219 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: son:SO_2237 phosphotransferase system, enzyme I; phosphoenolpyruvate-protein phosphotransferase complement(2417516..2419219) Shewanella pealeana ATCC 700345 5662387 YP_001501850.1 CDS Spea_1995 NC_009901.1 2419230 2419502 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sbm:Shew185_2349 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr complement(2419230..2419502) Shewanella pealeana ATCC 700345 5662388 YP_001501851.1 CDS Spea_1996 NC_009901.1 2419567 2419953 R KEGG: slo:Shew_1867 hypothetical protein; hypothetical protein complement(2419567..2419953) Shewanella pealeana ATCC 700345 5662389 YP_001501852.1 CDS Spea_1997 NC_009901.1 2420055 2421695 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: slo:Shew_1868 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2420055..2421695) Shewanella pealeana ATCC 700345 5662390 YP_001501853.1 CDS Spea_1998 NC_009901.1 2422060 2422764 D KEGG: shn:Shewana3_2253 hypothetical protein; hypothetical protein 2422060..2422764 Shewanella pealeana ATCC 700345 5662391 YP_001501854.1 CDS Spea_1999 NC_009901.1 2422912 2423559 R KEGG: ppr:PBPRB1229 putative DNA polymerase III; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2422912..2423559) Shewanella pealeana ATCC 700345 5662392 YP_001501855.1 CDS Spea_2000 NC_009901.1 2423747 2424892 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: sbl:Sbal_2354 cupin 4 family protein; cupin 4 family protein 2423747..2424892 Shewanella pealeana ATCC 700345 5662393 YP_001501856.1 CDS Spea_2001 NC_009901.1 2425066 2425956 R KEGG: rme:Rmet_1758 hypothetical protein; hypothetical protein complement(2425066..2425956) Shewanella pealeana ATCC 700345 5662394 YP_001501857.1 CDS Spea_2002 NC_009901.1 2426244 2426756 D KEGG: vfi:VF0656 transcription elongation factor; GreA/GreB family elongation factor 2426244..2426756 Shewanella pealeana ATCC 700345 5662395 YP_001501858.1 CDS Spea_2003 NC_009901.1 2426831 2427190 D hypothetical protein 2426831..2427190 Shewanella pealeana ATCC 700345 5662396 YP_001501859.1 CDS Spea_2004 NC_009901.1 2427291 2428826 R PFAM: helix-turn-helix domain protein; KEGG: sbm:Shew185_4294 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2427291..2428826) Shewanella pealeana ATCC 700345 5662397 YP_001501860.1 CDS Spea_2005 NC_009901.1 2428976 2429491 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 2428976..2429491 Shewanella pealeana ATCC 700345 5662398 YP_001501861.1 CDS Spea_2006 NC_009901.1 2429824 2431041 D PFAM: Fmu (Sun) domain protein; KEGG: son:SO_2215 sun protein, putative; Fmu (Sun) domain-containing protein 2429824..2431041 Shewanella pealeana ATCC 700345 5662399 YP_001501862.1 CDS Spea_2007 NC_009901.1 2431160 2433208 R PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: lpn:lpg2758 hypothetical protein; sulfatase complement(2431160..2433208) Shewanella pealeana ATCC 700345 5662400 YP_001501863.1 CDS Spea_2008 NC_009901.1 2433784 2435088 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pca:Pcar_1075 hypothetical protein; peptidoglycan-binding domain-containing protein 2433784..2435088 Shewanella pealeana ATCC 700345 5662401 YP_001501864.1 CDS Spea_2009 NC_009901.1 2435098 2435499 D KEGG: vvy:VV3211 transposase and inactivated derivative; transposase and inactivated derivative 2435098..2435499 Shewanella pealeana ATCC 700345 5662402 YP_001501865.1 CDS Spea_2010 NC_009901.1 2436305 2436871 D PFAM: peptidase A24A prepilin type IV; KEGG: pol:Bpro_2546 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 2436305..2436871 Shewanella pealeana ATCC 700345 5662403 YP_001501866.1 CDS Spea_2011 NC_009901.1 2436882 2438204 D SMART: AAA ATPase; KEGG: ppr:PBPRB0612 hypothetical protein; ATPase AAA 2436882..2438204 Shewanella pealeana ATCC 700345 5662404 YP_001501867.1 CDS Spea_2012 NC_009901.1 2438231 2439049 D PFAM: SAF domain protein; KEGG: vvu:VV1_1748 flp pilus assembly protein CpaB; SAF domain-containing protein 2438231..2439049 Shewanella pealeana ATCC 700345 5662405 YP_001501868.1 CDS Spea_2013 NC_009901.1 2439095 2440531 D PFAM: type II and III secretion system protein; transport-associated; KEGG: vvy:VV2660 flp pilus assembly protein, secretin CpaC; type II and III secretion system protein 2439095..2440531 Shewanella pealeana ATCC 700345 5662406 YP_001501869.1 CDS Spea_2014 NC_009901.1 2440615 2440860 D hypothetical protein 2440615..2440860 Shewanella pealeana ATCC 700345 5662407 YP_001501870.1 CDS Spea_2015 NC_009901.1 2440901 2442238 D KEGG: ppr:PBPRB0607 hypothetical protein; hypothetical protein 2440901..2442238 Shewanella pealeana ATCC 700345 5662408 YP_001501871.1 CDS Spea_2016 NC_009901.1 2442249 2442731 D PFAM: TadE family protein; KEGG: ppr:PBPRB0606 hypothetical protein; TadE family protein 2442249..2442731 Shewanella pealeana ATCC 700345 5662409 YP_001501872.1 CDS Spea_2017 NC_009901.1 2442728 2443183 D PFAM: TadE family protein; KEGG: ppr:PBPRB0605 hypothetical protein; TadE family protein 2442728..2443183 Shewanella pealeana ATCC 700345 5662410 YP_001501873.1 CDS Spea_2018 NC_009901.1 2443277 2444503 D KEGG: vvy:VV2654 flp pilus assembly protein, ATPase CpaE; Flp pilus assembly protein ATPase CpaE-like protein 2443277..2444503 Shewanella pealeana ATCC 700345 5662411 YP_001501874.1 CDS Spea_2019 NC_009901.1 2444505 2445833 D PFAM: type II secretion system protein E; KEGG: ppr:PBPRB0603 putative pilus assembly protein; type II secretion system protein E 2444505..2445833 Shewanella pealeana ATCC 700345 5662412 YP_001501875.1 CDS Spea_2020 NC_009901.1 2445845 2446822 D PFAM: type II secretion system protein; KEGG: vpa:VP2411 putative tight adherence TadB-related transmembrane protein; type II secretion system protein 2445845..2446822 Shewanella pealeana ATCC 700345 5662413 YP_001501876.1 CDS Spea_2021 NC_009901.1 2446824 2447786 D PFAM: type II secretion system protein; KEGG: ppr:PBPRB0601 hypothetical putative tight adherence TadC-related transmembrane protein; type II secretion system protein 2446824..2447786 Shewanella pealeana ATCC 700345 5662414 YP_001501877.1 CDS Spea_2022 NC_009901.1 2447811 2448866 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ppr:PBPRB0600 hypothetical protein; hypothetical protein 2447811..2448866 Shewanella pealeana ATCC 700345 5662415 YP_001501878.1 CDS Spea_2023 NC_009901.1 2448962 2449309 R PFAM: hydrogenase expression/synthesis HypA; KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA complement(2448962..2449309) Shewanella pealeana ATCC 700345 5662416 YP_001501879.1 CDS Spea_2024 NC_009901.1 2449309 2450325 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: slo:Shew_1756 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2449309..2450325) Shewanella pealeana ATCC 700345 5662417 YP_001501880.1 CDS Spea_2025 NC_009901.1 2450325 2451443 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: slo:Shew_1757 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2450325..2451443) Shewanella pealeana ATCC 700345 5662418 YP_001501881.1 CDS Spea_2026 NC_009901.1 2451443 2451691 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: saz:Sama_1672 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(2451443..2451691) Shewanella pealeana ATCC 700345 5662419 YP_001501882.1 CDS Spea_2027 NC_009901.1 2451691 2452452 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: shw:Sputw3181_2173 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2451691..2452452) Shewanella pealeana ATCC 700345 5662420 YP_001501883.1 CDS Spea_2028 NC_009901.1 2452552 2454954 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: slo:Shew_1760 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2452552..2454954) Shewanella pealeana ATCC 700345 5662421 YP_001501884.1 CDS Spea_2029 NC_009901.1 2454973 2456736 R KEGG: slo:Shew_1761 hypothetical protein; hypothetical protein complement(2454973..2456736) Shewanella pealeana ATCC 700345 5662422 YP_001501885.1 CDS Spea_2030 NC_009901.1 2456723 2457280 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: shw:Sputw3181_1921 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(2456723..2457280) Shewanella pealeana ATCC 700345 5662423 YP_001501886.1 CDS Spea_2031 NC_009901.1 2457290 2457958 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: slo:Shew_1763 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2457290..2457958) Shewanella pealeana ATCC 700345 5662424 YP_001501887.1 CDS Spea_2032 NC_009901.1 2457973 2459676 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: slo:Shew_1764 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(2457973..2459676) Shewanella pealeana ATCC 700345 5662425 YP_001501888.1 CDS Spea_2033 NC_009901.1 2459679 2460815 R KEGG: slo:Shew_1765 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA complement(2459679..2460815) Shewanella pealeana ATCC 700345 5662426 YP_001501889.1 CDS asnC NC_009901.1 2461238 2462638 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2461238..2462638) Shewanella pealeana ATCC 700345 5662427 YP_001501890.1 CDS Spea_2035 NC_009901.1 2462838 2463125 D KEGG: sdn:Sden_1957 hypothetical protein; hypothetical protein 2462838..2463125 Shewanella pealeana ATCC 700345 5662428 YP_001501891.1 CDS Spea_2036 NC_009901.1 2463164 2463757 R PFAM: NUDIX hydrolase; KEGG: slo:Shew_1902 NUDIX hydrolase; NUDIX hydrolase complement(2463164..2463757) Shewanella pealeana ATCC 700345 5662429 YP_001501892.1 CDS Spea_2037 NC_009901.1 2463805 2465277 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: shw:Sputw3181_2219 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I complement(2463805..2465277) Shewanella pealeana ATCC 700345 5662430 YP_001501893.1 CDS Spea_2038 NC_009901.1 2465456 2466976 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: slo:Shew_1904 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2465456..2466976 Shewanella pealeana ATCC 700345 5662431 YP_001501894.1 CDS Spea_2039 NC_009901.1 2467255 2469306 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_1905 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 2467255..2469306 Shewanella pealeana ATCC 700345 5662432 YP_001501895.1 CDS Spea_2040 NC_009901.1 2469484 2470050 R KEGG: shw:Sputw3181_3605 methylation site containing protein; hypothetical protein complement(2469484..2470050) Shewanella pealeana ATCC 700345 5662433 YP_001501896.1 CDS Spea_2041 NC_009901.1 2470491 2472074 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(2470491..2472074) Shewanella pealeana ATCC 700345 5662434 YP_001501897.1 CDS Spea_2042 NC_009901.1 2472185 2473129 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfr:Sfri_3138 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 2472185..2473129 Shewanella pealeana ATCC 700345 5662435 YP_001501898.1 CDS Spea_2043 NC_009901.1 2473349 2475523 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 2473349..2475523 Shewanella pealeana ATCC 700345 5662436 YP_001501899.1 CDS Spea_2044 NC_009901.1 2475595 2478210 R PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: slo:Shew_1910 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2475595..2478210) Shewanella pealeana ATCC 700345 5662437 YP_001501900.1 CDS Spea_2045 NC_009901.1 2478541 2479164 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: slo:Shew_1911 multiple antibiotic resistance (MarC)-related protein; hypothetical protein 2478541..2479164 Shewanella pealeana ATCC 700345 5662438 YP_001501901.1 CDS Spea_2046 NC_009901.1 2479241 2480575 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2479241..2480575) Shewanella pealeana ATCC 700345 5662439 YP_001501902.1 CDS Spea_2047 NC_009901.1 2480594 2481181 R KEGG: son:SO_2484 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; hypothetical protein complement(2480594..2481181) Shewanella pealeana ATCC 700345 5662440 YP_001501903.1 CDS Spea_2048 NC_009901.1 2481285 2482499 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2481285..2482499) Shewanella pealeana ATCC 700345 5662441 YP_001501904.1 CDS Spea_2049 NC_009901.1 2482835 2483395 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2482835..2483395) Shewanella pealeana ATCC 700345 5662442 YP_001501905.1 CDS Spea_2050 NC_009901.1 2483440 2484654 R KEGG: shm:Shewmr7_1938 hypothetical protein; hypothetical protein complement(2483440..2484654) Shewanella pealeana ATCC 700345 5662443 YP_001501906.1 CDS Spea_2051 NC_009901.1 2484779 2485306 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2484779..2485306) Shewanella pealeana ATCC 700345 5662444 YP_001501907.1 CDS Spea_2052 NC_009901.1 2485363 2485635 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: slo:Shew_1918 CopG domain protein DNA-binding domain protein; LexA regulated protein complement(2485363..2485635) Shewanella pealeana ATCC 700345 5662445 YP_001501908.1 CDS Spea_2053 NC_009901.1 2485647 2485868 R KEGG: son:SO_2332 hypothetical protein; hypothetical protein complement(2485647..2485868) Shewanella pealeana ATCC 700345 5662446 YP_001501909.1 CDS Spea_2054 NC_009901.1 2485965 2486723 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sbl:Sbal_4513 hypothetical protein; alpha/beta hydrolase fold protein complement(2485965..2486723) Shewanella pealeana ATCC 700345 5662447 YP_001501910.1 CDS Spea_2055 NC_009901.1 2486928 2487536 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2486928..2487536 Shewanella pealeana ATCC 700345 5662448 YP_001501911.1 CDS Spea_2056 NC_009901.1 2487611 2489257 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2487611..2489257 Shewanella pealeana ATCC 700345 5662449 YP_001501912.1 CDS Spea_2057 NC_009901.1 2489806 2490237 R KEGG: sun:SUN_2117 hypothetical protein; hypothetical protein complement(2489806..2490237) Shewanella pealeana ATCC 700345 5662450 YP_001501913.1 CDS Spea_2058 NC_009901.1 2490368 2490739 R KEGG: neu:NE2100 hypothetical protein; hypothetical protein complement(2490368..2490739) Shewanella pealeana ATCC 700345 5662451 YP_001501914.1 CDS Spea_2059 NC_009901.1 2490814 2491299 R PFAM: Domain of unknown function DUF1863; KEGG: shm:Shewmr7_1038 hypothetical protein; hypothetical protein complement(2490814..2491299) Shewanella pealeana ATCC 700345 5662452 YP_001501915.1 CDS Spea_2060 NC_009901.1 2492212 2492955 D KEGG: cbe:Cbei_2806 hypothetical protein; hypothetical protein 2492212..2492955 Shewanella pealeana ATCC 700345 5662453 YP_001501916.1 CDS Spea_2061 NC_009901.1 2493222 2496497 R KEGG: sbo:SBO_1384 hypothetical protein; hypothetical protein complement(2493222..2496497) Shewanella pealeana ATCC 700345 5662454 YP_001501917.1 CDS Spea_2062 NC_009901.1 2497076 2497486 R PFAM: ferredoxin; KEGG: slo:Shew_1944 ferredoxin; ferredoxin complement(2497076..2497486) Shewanella pealeana ATCC 700345 5662455 YP_001501918.1 CDS nrdB NC_009901.1 2497455 2498585 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(2497455..2498585) Shewanella pealeana ATCC 700345 5662456 YP_001501919.1 CDS Spea_2064 NC_009901.1 2498658 2500946 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2498658..2500946) Shewanella pealeana ATCC 700345 5662457 YP_001501920.1 CDS Spea_2065 NC_009901.1 2501398 2502081 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfr:Sfri_2132 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(2501398..2502081) Shewanella pealeana ATCC 700345 5662458 YP_001501921.1 CDS Spea_2066 NC_009901.1 2502074 2502784 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2502074..2502784) Shewanella pealeana ATCC 700345 5662459 YP_001501922.1 CDS Spea_2067 NC_009901.1 2503066 2505777 D KEGG: sfr:Sfri_2130 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 2503066..2505777 Shewanella pealeana ATCC 700345 5662460 YP_001501923.1 CDS Spea_2068 NC_009901.1 2506347 2507504 R PFAM: beta-lactamase; KEGG: slo:Shew_1968 beta-lactamase; beta-lactamase complement(2506347..2507504) Shewanella pealeana ATCC 700345 5662461 YP_001501924.1 CDS Spea_2069 NC_009901.1 2508137 2509228 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2508137..2509228 Shewanella pealeana ATCC 700345 5662462 YP_001501925.1 CDS Spea_2070 NC_009901.1 2509307 2510500 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2509307..2510500) Shewanella pealeana ATCC 700345 5662463 YP_001501926.1 CDS Spea_2071 NC_009901.1 2510909 2512189 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2510909..2512189 Shewanella pealeana ATCC 700345 5662464 YP_001501927.1 CDS cmk NC_009901.1 2512366 2513058 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2512366..2513058 Shewanella pealeana ATCC 700345 5662465 YP_001501928.1 CDS rpsA NC_009901.1 2513156 2514823 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2513156..2514823 Shewanella pealeana ATCC 700345 5662466 YP_001501929.1 CDS ihfB NC_009901.1 2514896 2515183 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2514896..2515183 Shewanella pealeana ATCC 700345 5662467 YP_001501930.1 CDS Spea_2075 NC_009901.1 2515294 2515614 D PFAM: protein of unknown function DUF1049; KEGG: slo:Shew_1956 protein of unknown function DUF1049; hypothetical protein 2515294..2515614 Shewanella pealeana ATCC 700345 5662468 YP_001501931.1 CDS Spea_2076 NC_009901.1 2515616 2516776 D KEGG: slo:Shew_1957 hypothetical protein; hypothetical protein 2515616..2516776 Shewanella pealeana ATCC 700345 5662469 YP_001501932.1 CDS Spea_2077 NC_009901.1 2516843 2517538 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2516843..2517538 Shewanella pealeana ATCC 700345 5662470 YP_001501933.1 CDS Spea_2078 NC_009901.1 2517614 2518420 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfr:Sfri_2118 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2517614..2518420 Shewanella pealeana ATCC 700345 5662471 YP_001501934.1 CDS Spea_2079 NC_009901.1 2518482 2519024 D KEGG: slo:Shew_1960 hypothetical protein; hypothetical protein 2518482..2519024 Shewanella pealeana ATCC 700345 5662472 YP_001501935.1 CDS Spea_2080 NC_009901.1 2519235 2520182 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(2519235..2520182) Shewanella pealeana ATCC 700345 5662473 YP_001501936.1 CDS Spea_2081 NC_009901.1 2520504 2522264 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: she:Shewmr4_1931 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2520504..2522264 Shewanella pealeana ATCC 700345 5662474 YP_001501937.1 CDS Spea_2082 NC_009901.1 2522377 2523774 R KEGG: slo:Shew_1962 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2522377..2523774) Shewanella pealeana ATCC 700345 5662475 YP_001501938.1 CDS Spea_2083 NC_009901.1 2523994 2524170 R KEGG: sbl:Sbal_2079 hypothetical protein; hypothetical protein complement(2523994..2524170) Shewanella pealeana ATCC 700345 5662476 YP_001501939.1 CDS Spea_2084 NC_009901.1 2524424 2524756 D PFAM: Domain of unknown function DUF1904; KEGG: slo:Shew_1964 hypothetical protein; hypothetical protein 2524424..2524756 Shewanella pealeana ATCC 700345 5662477 YP_001501940.1 CDS pssA NC_009901.1 2524740 2526080 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2524740..2526080 Shewanella pealeana ATCC 700345 5662478 YP_001501941.1 CDS Spea_2086 NC_009901.1 2526195 2526956 D PFAM: DTW domain containing protein; KEGG: shw:Sputw3181_1985 DTW domain containing protein; DTW domain-containing protein 2526195..2526956 Shewanella pealeana ATCC 700345 5662479 YP_001501942.1 CDS Spea_2087 NC_009901.1 2527076 2527315 D hypothetical protein 2527076..2527315 Shewanella pealeana ATCC 700345 5662480 YP_001501943.1 CDS Spea_2088 NC_009901.1 2527340 2527939 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1969 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2527340..2527939) Shewanella pealeana ATCC 700345 5662481 YP_001501944.1 CDS Spea_2089 NC_009901.1 2527932 2529722 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1970 histidine kinase; histidine kinase complement(2527932..2529722) Shewanella pealeana ATCC 700345 5662482 YP_001501945.1 CDS Spea_2090 NC_009901.1 2530063 2531346 R PFAM: ApbE family lipoprotein; KEGG: slo:Shew_1971 ApbE family lipoprotein; ApbE family lipoprotein complement(2530063..2531346) Shewanella pealeana ATCC 700345 5662483 YP_001501946.1 CDS Spea_2091 NC_009901.1 2531477 2532820 D PFAM: FMN-binding domain protein; KEGG: slo:Shew_1972 FMN-binding domain protein; FMN-binding domain-containing protein 2531477..2532820 Shewanella pealeana ATCC 700345 5662484 YP_001501947.1 CDS Spea_2092 NC_009901.1 2532902 2533942 D PFAM: porin Gram-negative type; KEGG: slo:Shew_1973 porin, gram-negative type; porin 2532902..2533942 Shewanella pealeana ATCC 700345 5662485 YP_001501948.1 CDS Spea_2093 NC_009901.1 2534506 2535288 D PFAM: pseudouridine synthase; KEGG: asa:ASA_2900 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 2534506..2535288 Shewanella pealeana ATCC 700345 5662486 YP_001501949.1 CDS Spea_2094 NC_009901.1 2535348 2536550 R PFAM: integrase family protein; KEGG: sbm:Shew185_2263 phage integrase family protein; integrase family protein complement(2535348..2536550) Shewanella pealeana ATCC 700345 5662487 YP_001501950.1 CDS Spea_2095 NC_009901.1 2537317 2537817 D KEGG: sbm:Shew185_2262 hypothetical protein; hypothetical protein 2537317..2537817 Shewanella pealeana ATCC 700345 5662488 YP_001501951.1 CDS Spea_2096 NC_009901.1 2537984 2539006 R PFAM: protein of unknown function DUF227; SMART: CHK kinase-like; KEGG: slo:Shew_2009 hypothetical protein; hypothetical protein complement(2537984..2539006) Shewanella pealeana ATCC 700345 5662489 YP_001501952.1 CDS Spea_2097 NC_009901.1 2539157 2539546 D KEGG: vpa:VPA1278 hypothetical protein; hypothetical protein 2539157..2539546 Shewanella pealeana ATCC 700345 5662490 YP_001501953.1 CDS Spea_2098 NC_009901.1 2539792 2540286 R KEGG: pha:PSHAb0058 putative orphan protein; putative orphan protein complement(2539792..2540286) Shewanella pealeana ATCC 700345 5662491 YP_001501954.1 CDS Spea_2099 NC_009901.1 2540289 2542745 R KEGG: pat:Patl_4270 putative Zn-dependent aminopeptidase; putative Zn-dependent aminopeptidase complement(2540289..2542745) Shewanella pealeana ATCC 700345 5662492 YP_001501955.1 CDS Spea_2100 NC_009901.1 2542979 2543674 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vfi:VF1658 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2542979..2543674 Shewanella pealeana ATCC 700345 5662493 YP_001501956.1 CDS Spea_2101 NC_009901.1 2543977 2545353 D TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; protein of unknown function DUF785; RimK domain protein ATP-grasp; KEGG: fjo:Fjoh_2582 alpha-L-glutamate ligase, RimK family; alpha-L-glutamate ligase 2543977..2545353 Shewanella pealeana ATCC 700345 5662494 YP_001501957.1 CDS Spea_2102 NC_009901.1 2545570 2545845 D KEGG: slo:Shew_2004 hypothetical protein; hypothetical protein 2545570..2545845 Shewanella pealeana ATCC 700345 5662495 YP_001501958.1 CDS Spea_2103 NC_009901.1 2546011 2546343 D hypothetical protein 2546011..2546343 Shewanella pealeana ATCC 700345 5662496 YP_001501959.1 CDS Spea_2104 NC_009901.1 2546540 2547550 R KEGG: slo:Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(2546540..2547550) Shewanella pealeana ATCC 700345 5662497 YP_001501960.1 CDS Spea_2105 NC_009901.1 2547769 2548602 R KEGG: slo:Shew_2001 hypothetical protein; hypothetical protein complement(2547769..2548602) Shewanella pealeana ATCC 700345 5662498 YP_001501961.1 CDS Spea_2106 NC_009901.1 2548825 2550261 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2548825..2550261 Shewanella pealeana ATCC 700345 5662499 YP_001501962.1 CDS Spea_2107 NC_009901.1 2553406 2553735 R PFAM: DsrC family protein; KEGG: shm:Shewmr7_2007 DsrC family protein; DsrC family protein complement(2553406..2553735) Shewanella pealeana ATCC 700345 5664755 YP_001501963.1 CDS Spea_2108 NC_009901.1 2553737 2554018 R PFAM: DsrH family protein; KEGG: shn:Shewana3_2057 DsrH family protein; DsrH family protein complement(2553737..2554018) Shewanella pealeana ATCC 700345 5662501 YP_001501964.1 CDS Spea_2109 NC_009901.1 2554018 2554374 R PFAM: DsrE family protein; KEGG: sbm:Shew185_2207 DsrE family protein; DsrE family protein complement(2554018..2554374) Shewanella pealeana ATCC 700345 5662502 YP_001501965.1 CDS Spea_2110 NC_009901.1 2554383 2554772 R PFAM: DsrE family protein; KEGG: slo:Shew_2015 DsrE family protein; DsrE family protein complement(2554383..2554772) Shewanella pealeana ATCC 700345 5662503 YP_001501966.1 CDS Spea_2111 NC_009901.1 2554830 2555492 R PFAM: protein of unknown function UPF0005; KEGG: sbm:Shew185_2205 protein of unknown function UPF0005; hypothetical protein complement(2554830..2555492) Shewanella pealeana ATCC 700345 5662504 YP_001501967.1 CDS Spea_2112 NC_009901.1 2555664 2556566 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2013 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator complement(2555664..2556566) Shewanella pealeana ATCC 700345 5662505 YP_001501968.1 CDS Spea_2113 NC_009901.1 2556685 2557929 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2556685..2557929 Shewanella pealeana ATCC 700345 5662506 YP_001501969.1 CDS Spea_2114 NC_009901.1 2558294 2559073 R KEGG: pha:PSHAa2145 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase; 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase complement(2558294..2559073) Shewanella pealeana ATCC 700345 5664756 YP_001501970.1 CDS Spea_2115 NC_009901.1 2559224 2560579 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pha:PSHAa2144 transporter; major facilitator transporter complement(2559224..2560579) Shewanella pealeana ATCC 700345 5662508 YP_001501971.1 CDS Spea_2116 NC_009901.1 2560582 2561604 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(2560582..2561604) Shewanella pealeana ATCC 700345 5662509 YP_001501972.1 CDS Spea_2117 NC_009901.1 2561614 2562537 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(2561614..2562537) Shewanella pealeana ATCC 700345 5662510 YP_001501973.1 CDS Spea_2118 NC_009901.1 2562584 2563399 R PFAM: Hydratase/decarboxylase; KEGG: pha:PSHAa2141 2-hydroxypent-2,4-dienoate hydratase (HPH) (2-oxopent-4-enoate hydratase); 4-oxalocrotonate decarboxylase complement(2562584..2563399) Shewanella pealeana ATCC 700345 5662511 YP_001501974.1 CDS Spea_2119 NC_009901.1 2563410 2564378 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pha:PSHAa2140 TesA protein; flavin reductase domain-containing protein complement(2563410..2564378) Shewanella pealeana ATCC 700345 5662512 YP_001501975.1 CDS Spea_2120 NC_009901.1 2564669 2566093 D PFAM: aldehyde dehydrogenase; KEGG: pha:PSHAa2139 aldehyde dehydrogenase; aldehyde dehydrogenase 2564669..2566093 Shewanella pealeana ATCC 700345 5662513 YP_001501976.1 CDS Spea_2121 NC_009901.1 2566171 2567304 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pha:PSHAa2137 protein with ferredoxin subunits; Rieske (2Fe-2S) domain-containing protein complement(2566171..2567304) Shewanella pealeana ATCC 700345 5662514 YP_001501977.1 CDS Spea_2122 NC_009901.1 2567365 2568750 R PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2136 transporter; major facilitator transporter complement(2567365..2568750) Shewanella pealeana ATCC 700345 5662515 YP_001501978.1 CDS Spea_2123 NC_009901.1 2568927 2570036 D PFAM: beta-lactamase domain protein; KEGG: pha:PSHAa2135 metallo-dependent enzymatic protein; beta-lactamase domain-containing protein 2568927..2570036 Shewanella pealeana ATCC 700345 5662516 YP_001501979.1 CDS Spea_2124 NC_009901.1 2570076 2571773 D PFAM: AMP-dependent synthetase and ligase; KEGG: pha:PSHAa2134 AMP-binding enzyme; AMP-dependent synthetase and ligase 2570076..2571773 Shewanella pealeana ATCC 700345 5662517 YP_001501980.1 CDS Spea_2125 NC_009901.1 2572035 2573798 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pha:PSHAa2133 3-ketosteroid-delta1-dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2572035..2573798 Shewanella pealeana ATCC 700345 5662518 YP_001501981.1 CDS Spea_2126 NC_009901.1 2573987 2575627 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2573987..2575627 Shewanella pealeana ATCC 700345 5662519 YP_001501982.1 CDS Spea_2127 NC_009901.1 2576334 2578784 R KEGG: reu:Reut_A1574 hypothetical protein; hypothetical protein complement(2576334..2578784) Shewanella pealeana ATCC 700345 5662520 YP_001501983.1 CDS Spea_2128 NC_009901.1 2578799 2579803 R KEGG: reu:Reut_A1573 glycosyl hydrolase, BNR repeat; BNR repeat-containing glycosyl hydrolase complement(2578799..2579803) Shewanella pealeana ATCC 700345 5662521 YP_001501984.1 CDS Spea_2129 NC_009901.1 2580214 2581437 D PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0877 steroid degradation protein; acyl-CoA dehydrogenase type 2 2580214..2581437 Shewanella pealeana ATCC 700345 5662522 YP_001501985.1 CDS Spea_2130 NC_009901.1 2581476 2582561 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pha:PSHAa0878 reductase protein; ferredoxin 2581476..2582561 Shewanella pealeana ATCC 700345 5662523 YP_001501986.1 CDS Spea_2131 NC_009901.1 2583010 2583798 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0879 3-oxoacyl-(ACP) reductase; short-chain dehydrogenase/reductase SDR 2583010..2583798 Shewanella pealeana ATCC 700345 5662524 YP_001501987.1 CDS Spea_2132 NC_009901.1 2583806 2584909 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pha:PSHAa0880 NADPH dehydrogenase; NADH:flavin oxidoreductase 2583806..2584909 Shewanella pealeana ATCC 700345 5662525 YP_001501988.1 CDS Spea_2133 NC_009901.1 2584935 2585684 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dar:Daro_1211 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta 2584935..2585684 Shewanella pealeana ATCC 700345 5662526 YP_001501989.1 CDS Spea_2134 NC_009901.1 2585697 2586650 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: eba:ebA6510 electron transfer flavoprotein alpha subunit; electron transfer flavoprotein subunit alpha 2585697..2586650 Shewanella pealeana ATCC 700345 5662527 YP_001501990.1 CDS Spea_2135 NC_009901.1 2586740 2587933 D PFAM: regulatory protein LuxR; KEGG: pha:PSHAa0881 LuxR-type transcription regulator required for testosterone degradation; LuxR family transcriptional regulator 2586740..2587933 Shewanella pealeana ATCC 700345 5662528 YP_001501991.1 CDS Spea_2136 NC_009901.1 2588001 2588783 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2588001..2588783) Shewanella pealeana ATCC 700345 5662529 YP_001501992.1 CDS Spea_2137 NC_009901.1 2589023 2589793 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0883 short chain dehydrogenase; short chain dehydrogenase 2589023..2589793 Shewanella pealeana ATCC 700345 5662530 YP_001501993.1 CDS Spea_2138 NC_009901.1 2589931 2590896 D PFAM: protein of unknown function DUF35; KEGG: pha:PSHAa0884 hypothetical protein; hypothetical protein 2589931..2590896 Shewanella pealeana ATCC 700345 5662531 YP_001501994.1 CDS Spea_2139 NC_009901.1 2590911 2592041 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0885 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2590911..2592041 Shewanella pealeana ATCC 700345 5662532 YP_001501995.1 CDS Spea_2140 NC_009901.1 2592028 2592474 D PFAM: MaoC domain protein dehydratase; KEGG: pha:PSHAa0886 hypothetical protein; dehydratase 2592028..2592474 Shewanella pealeana ATCC 700345 5662533 YP_001501996.1 CDS Spea_2141 NC_009901.1 2592491 2593669 D KEGG: pha:PSHAa0887 lipid-transfer protein; lipid-transfer protein 2592491..2593669 Shewanella pealeana ATCC 700345 5662534 YP_001501997.1 CDS Spea_2142 NC_009901.1 2593672 2594841 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0888 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2593672..2594841 Shewanella pealeana ATCC 700345 5662535 YP_001501998.1 CDS Spea_2143 NC_009901.1 2594861 2596099 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0889 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2594861..2596099 Shewanella pealeana ATCC 700345 5662536 YP_001501999.1 CDS Spea_2144 NC_009901.1 2596096 2597301 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0890 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2596096..2597301 Shewanella pealeana ATCC 700345 5662537 YP_001502000.1 CDS Spea_2145 NC_009901.1 2597670 2598146 D PFAM: protein of unknown function DUF523; KEGG: mmw:Mmwyl1_2745 protein of unknown function DUF523; hypothetical protein 2597670..2598146 Shewanella pealeana ATCC 700345 5662538 YP_001502001.1 CDS Spea_2146 NC_009901.1 2598332 2600452 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pha:PSHAa0892 electron acceptor reductase/NADH oxidase, FAD binding, iron-sulfur cluster binding site; NADH:flavin oxidoreductase complement(2598332..2600452) Shewanella pealeana ATCC 700345 5662539 YP_001502002.1 CDS Spea_2147 NC_009901.1 2600581 2601417 R PFAM: alpha/beta hydrolase fold; KEGG: pha:PSHAa0893 hydrolase acting on oxygenated substrates (epoxide hydrolase); alpha/beta hydrolase fold protein complement(2600581..2601417) Shewanella pealeana ATCC 700345 5662540 YP_001502003.1 CDS Spea_2148 NC_009901.1 2601739 2602482 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0894 3-ketoacyl-(ACP) reductase; short-chain dehydrogenase/reductase SDR 2601739..2602482 Shewanella pealeana ATCC 700345 5662541 YP_001502004.1 CDS Spea_2149 NC_009901.1 2602492 2603118 D KEGG: pha:PSHAa0895 enzyme; hypothetical protein 2602492..2603118 Shewanella pealeana ATCC 700345 5662542 YP_001502005.1 CDS Spea_2150 NC_009901.1 2603184 2605049 D activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 2603184..2605049 Shewanella pealeana ATCC 700345 5662543 YP_001502006.1 CDS Spea_2151 NC_009901.1 2605062 2606273 D KEGG: pha:PSHAa0897 nonspecific lipid-transfer protein; nonspecific lipid-transfer protein 2605062..2606273 Shewanella pealeana ATCC 700345 5662544 YP_001502007.1 CDS Spea_2152 NC_009901.1 2606276 2607211 D PFAM: MaoC domain protein dehydratase; protein of unknown function DUF35; KEGG: pha:PSHAa0898 acyl dehydratase; hypothetical protein 2606276..2607211 Shewanella pealeana ATCC 700345 5662545 YP_001502008.1 CDS Spea_2153 NC_009901.1 2607403 2608305 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pha:PSHAa0900 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2607403..2608305 Shewanella pealeana ATCC 700345 5662546 YP_001502009.1 CDS Spea_2154 NC_009901.1 2608306 2609181 D PFAM: coenzyme A transferase; KEGG: pha:PSHAa0901 acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; coenzyme A transferase 2608306..2609181 Shewanella pealeana ATCC 700345 5662547 YP_001502010.1 CDS Spea_2155 NC_009901.1 2609256 2610086 D PFAM: coenzyme A transferase; KEGG: pha:PSHAa0902 acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; coenzyme A transferase 2609256..2610086 Shewanella pealeana ATCC 700345 5662548 YP_001502011.1 CDS Spea_2156 NC_009901.1 2610086 2611042 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2610086..2611042 Shewanella pealeana ATCC 700345 5662549 YP_001502012.1 CDS Spea_2157 NC_009901.1 2611039 2612193 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: pha:PSHAa0904 dioxygenase; 2-nitropropane dioxygenase 2611039..2612193 Shewanella pealeana ATCC 700345 5662550 YP_001502013.1 CDS Spea_2158 NC_009901.1 2612196 2612981 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2612196..2612981 Shewanella pealeana ATCC 700345 5662551 YP_001502014.1 CDS Spea_2159 NC_009901.1 2613011 2614168 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa0906 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2613011..2614168 Shewanella pealeana ATCC 700345 5662552 YP_001502015.1 CDS Spea_2160 NC_009901.1 2614177 2615253 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa0907 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2614177..2615253 Shewanella pealeana ATCC 700345 5662553 YP_001502016.1 CDS Spea_2161 NC_009901.1 2615253 2616407 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2615253..2616407 Shewanella pealeana ATCC 700345 5662554 YP_001502017.1 CDS Spea_2162 NC_009901.1 2616463 2617341 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pha:PSHAa0909 short chain dehydrogenase; short chain dehydrogenase 2616463..2617341 Shewanella pealeana ATCC 700345 5662555 YP_001502018.1 CDS Spea_2163 NC_009901.1 2617412 2619007 D PFAM: Amidase; KEGG: pha:PSHAa0910 allophanate hydrolase; amidase 2617412..2619007 Shewanella pealeana ATCC 700345 5662556 YP_001502019.1 CDS Spea_2164 NC_009901.1 2619714 2620526 D KEGG: son:SO_4704 hypothetical protein; hypothetical protein 2619714..2620526 Shewanella pealeana ATCC 700345 5662557 YP_001502020.1 CDS Spea_2165 NC_009901.1 2620704 2621144 D hypothetical protein 2620704..2621144 Shewanella pealeana ATCC 700345 5662558 YP_001502021.1 CDS Spea_2166 NC_009901.1 2622091 2623617 R PFAM: protein of unknown function DUF1302; KEGG: bur:Bcep18194_B1461 protein of unknown function DUF1302; hypothetical protein complement(2622091..2623617) Shewanella pealeana ATCC 700345 5662559 YP_001502022.1 CDS Spea_2167 NC_009901.1 2623644 2625029 R PFAM: protein of unknown function DUF1329; KEGG: reu:Reut_A1519 protein of unknown function DUF1329; hypothetical protein complement(2623644..2625029) Shewanella pealeana ATCC 700345 5662560 YP_001502023.1 CDS Spea_2168 NC_009901.1 2625425 2626210 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAa2151 short chain dehydrogenase; short chain dehydrogenase 2625425..2626210 Shewanella pealeana ATCC 700345 5662561 YP_001502024.1 CDS Spea_2169 NC_009901.1 2626222 2626707 D PFAM: MaoC domain protein dehydratase; KEGG: pha:PSHAa2150 MaoC-like deshydratase domain; dehydratase 2626222..2626707 Shewanella pealeana ATCC 700345 5662562 YP_001502025.1 CDS Spea_2170 NC_009901.1 2626720 2627925 D KEGG: reu:Reut_A1572 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2626720..2627925 Shewanella pealeana ATCC 700345 5662563 YP_001502026.1 CDS Spea_2171 NC_009901.1 2627940 2628788 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_3812 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2627940..2628788 Shewanella pealeana ATCC 700345 5662564 YP_001502027.1 CDS Spea_2172 NC_009901.1 2628853 2630499 D PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pen:PSEEN3660 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2628853..2630499 Shewanella pealeana ATCC 700345 5662565 YP_001502028.1 CDS Spea_2173 NC_009901.1 2630610 2631374 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: gme:Gmet_2217 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2630610..2631374 Shewanella pealeana ATCC 700345 5662566 YP_001502029.1 CDS Spea_2174 NC_009901.1 2631413 2631784 D PFAM: nuclear transport factor 2; KEGG: nca:Noca_3954 nuclear transport factor 2; nuclear transport factor 2 2631413..2631784 Shewanella pealeana ATCC 700345 5662567 YP_001502030.1 CDS Spea_2175 NC_009901.1 2631837 2633042 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pha:PSHAa2131 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2631837..2633042 Shewanella pealeana ATCC 700345 5662568 YP_001502031.1 CDS Spea_2176 NC_009901.1 2633042 2634232 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pha:PSHAa2130 acyl-CoA dehydrogenase protein; acyl-CoA dehydrogenase domain-containing protein 2633042..2634232 Shewanella pealeana ATCC 700345 5662569 YP_001502032.1 CDS Spea_2177 NC_009901.1 2634341 2637514 R PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_1929 acriflavin resistance protein; acriflavin resistance protein complement(2634341..2637514) Shewanella pealeana ATCC 700345 5662570 YP_001502033.1 CDS Spea_2178 NC_009901.1 2637518 2638711 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfr:Sfri_1930 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2637518..2638711) Shewanella pealeana ATCC 700345 5662571 YP_001502034.1 CDS Spea_2179 NC_009901.1 2639206 2639541 R PFAM: SEC-C motif domain protein; KEGG: shw:Sputw3181_1017 sec-C motif domain protein; SecC motif-containing protein complement(2639206..2639541) Shewanella pealeana ATCC 700345 5662572 YP_001502035.1 CDS Spea_2180 NC_009901.1 2639909 2640829 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2639909..2640829 Shewanella pealeana ATCC 700345 5662573 YP_001502036.1 CDS Spea_2181 NC_009901.1 2640913 2643300 R KEGG: ppr:PBPRB0364 putative ATP-dependent protease La-relatedprotein; putative ATP-dependent protease La-likeprotein complement(2640913..2643300) Shewanella pealeana ATCC 700345 5662574 YP_001502037.1 CDS Spea_2182 NC_009901.1 2643631 2646048 R PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease; peptidase U32 complement(2643631..2646048) Shewanella pealeana ATCC 700345 5662575 YP_001502038.1 CDS Spea_2183 NC_009901.1 2646480 2647532 D KEGG: ppr:PBPRB1179 hypothetical protein; hypothetical protein 2646480..2647532 Shewanella pealeana ATCC 700345 5662576 YP_001502039.1 CDS Spea_2184 NC_009901.1 2647701 2648342 D KEGG: sfr:Sfri_3117 hypothetical protein; hypothetical protein 2647701..2648342 Shewanella pealeana ATCC 700345 5662577 YP_001502040.1 CDS Spea_2185 NC_009901.1 2648813 2649628 R involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA complement(2648813..2649628) Shewanella pealeana ATCC 700345 5662578 YP_001502041.1 CDS Spea_2186 NC_009901.1 2650271 2651116 D PFAM: beta-lactamase domain protein; KEGG: son:SO_A0149 hypothetical protein; beta-lactamase domain-containing protein 2650271..2651116 Shewanella pealeana ATCC 700345 5662579 YP_001502042.1 CDS Spea_2187 NC_009901.1 2651397 2652692 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(2651397..2652692) Shewanella pealeana ATCC 700345 5662580 YP_001502043.1 CDS codB NC_009901.1 2652703 2653968 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: vvu:VV2_0788 purine-cytosine permease; cytosine permease complement(2652703..2653968) Shewanella pealeana ATCC 700345 5662581 YP_001502044.1 CDS Spea_2189 NC_009901.1 2654391 2654663 D KEGG: gur:Gura_3576 hypothetical protein; hypothetical protein 2654391..2654663 Shewanella pealeana ATCC 700345 5662582 YP_001502045.1 CDS Spea_2190 NC_009901.1 2654786 2656330 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: vvy:VVA0679 permease; EmrB/QacA family drug resistance transporter complement(2654786..2656330) Shewanella pealeana ATCC 700345 5662583 YP_001502046.1 CDS Spea_2191 NC_009901.1 2656332 2657396 R PFAM: secretion protein HlyD family protein; KEGG: vvy:VVA0680 multidrug resistance efflux pump; secretion protein HlyD family protein complement(2656332..2657396) Shewanella pealeana ATCC 700345 5662584 YP_001502047.1 CDS Spea_2192 NC_009901.1 2658015 2659241 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2037 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2658015..2659241 Shewanella pealeana ATCC 700345 5662585 YP_001502048.1 CDS Spea_2193 NC_009901.1 2659241 2662375 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2036 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2659241..2662375 Shewanella pealeana ATCC 700345 5662586 YP_001502049.1 CDS Spea_2194 NC_009901.1 2662368 2663924 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_2035 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system outer membrane lipoprotein 2662368..2663924 Shewanella pealeana ATCC 700345 5662587 YP_001502050.1 CDS Spea_2195 NC_009901.1 2664091 2665344 R PFAM: UMUC domain protein DNA-repair protein; KEGG: sdn:Sden_3235 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(2664091..2665344) Shewanella pealeana ATCC 700345 5662588 YP_001502051.1 CDS Spea_2196 NC_009901.1 2665347 2665754 R PFAM: peptidase S24 and S26 domain protein; KEGG: sfr:Sfri_1963 putative prophage repressor; peptidase S24/S26 domain-containing protein complement(2665347..2665754) Shewanella pealeana ATCC 700345 5662589 YP_001502052.1 CDS Spea_2197 NC_009901.1 2666018 2667334 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vfi:VFA0342 sensory transduction protein kinase; diguanylate cyclase 2666018..2667334 Shewanella pealeana ATCC 700345 5662590 YP_001502053.1 CDS Spea_2198 NC_009901.1 2667453 2668331 D PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB0725 hypothetical protein; AraC family transcriptional regulator 2667453..2668331 Shewanella pealeana ATCC 700345 5662591 YP_001502054.1 CDS Spea_2199 NC_009901.1 2668506 2669372 D KEGG: ppr:PBPRB0729 hypothetical protein; hypothetical protein 2668506..2669372 Shewanella pealeana ATCC 700345 5662592 YP_001502055.1 CDS Spea_2200 NC_009901.1 2669574 2670488 D PFAM: Appr-1-p processing domain protein; KEGG: ehi:379.t00002 conserved hypothetical protein Pfam: Macro SIR2 PROSITE: SIRTUIN; hypothetical protein 2669574..2670488 Shewanella pealeana ATCC 700345 5662593 YP_001502056.1 CDS Spea_2201 NC_009901.1 2670476 2671345 D KEGG: ehi:379.t00002 conserved hypothetical protein Pfam: Macro SIR2 PROSITE: SIRTUIN; hypothetical protein 2670476..2671345 Shewanella pealeana ATCC 700345 5662594 YP_001502057.1 CDS Spea_2202 NC_009901.1 2671677 2672060 R hypothetical protein complement(2671677..2672060) Shewanella pealeana ATCC 700345 5662595 YP_001502058.1 CDS Spea_2203 NC_009901.1 2672303 2672686 D KEGG: cvi:CV_1450 hypothetical protein; hypothetical protein 2672303..2672686 Shewanella pealeana ATCC 700345 5662596 YP_001502059.1 CDS Spea_2204 NC_009901.1 2673302 2674417 D KEGG: dme:Dmel_CG4335 CG4335; TIGRFAM: trimethyllysine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA; trimethyllysine dioxygenase 2673302..2674417 Shewanella pealeana ATCC 700345 5662597 YP_001502060.1 CDS Spea_2205 NC_009901.1 2674405 2675418 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: gme:Gmet_0270 aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 2674405..2675418 Shewanella pealeana ATCC 700345 5662598 YP_001502061.1 CDS Spea_2206 NC_009901.1 2675433 2676791 D PFAM: amino acid permease-associated region; Amino acid transporter transmembrane; KEGG: cvi:CV_3432 probable amino acid permease; amino acid permease-associated protein 2675433..2676791 Shewanella pealeana ATCC 700345 5662599 YP_001502062.1 CDS Spea_2207 NC_009901.1 2676990 2677928 R KEGG: vha:VIBHAR_03071 hypothetical protein; hypothetical protein complement(2676990..2677928) Shewanella pealeana ATCC 700345 5662600 YP_001502063.1 CDS Spea_2208 NC_009901.1 2680656 2681204 R PFAM: GCN5-related N-acetyltransferase; KEGG: vpa:VP1794 hypothetical protein; N-acetyltransferase GCN5 complement(2680656..2681204) Shewanella pealeana ATCC 700345 5662601 YP_001502064.1 CDS Spea_2209 NC_009901.1 2681333 2681905 R KEGG: cps:CPS_3017 hypothetical protein; hypothetical protein complement(2681333..2681905) Shewanella pealeana ATCC 700345 5662602 YP_001502065.1 CDS Spea_2210 NC_009901.1 2683156 2683710 R hypothetical protein complement(2683156..2683710) Shewanella pealeana ATCC 700345 5662603 YP_001502066.1 CDS Spea_2211 NC_009901.1 2684377 2685669 R PFAM: integrase family protein; KEGG: sbm:Shew185_2174 phage integrase family protein; integrase family protein complement(2684377..2685669) Shewanella pealeana ATCC 700345 5662604 YP_001502067.1 CDS Spea_2212 NC_009901.1 2685777 2686034 R KEGG: spc:Sputcn32_1997 hypothetical protein; hypothetical protein complement(2685777..2686034) Shewanella pealeana ATCC 700345 5662605 YP_001502068.1 CDS Spea_2213 NC_009901.1 2686237 2686734 R KEGG: sfr:Sfri_2009 hypothetical protein; hypothetical protein complement(2686237..2686734) Shewanella pealeana ATCC 700345 5662606 YP_001502069.1 CDS Spea_2214 NC_009901.1 2686963 2688399 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2686963..2688399 Shewanella pealeana ATCC 700345 5662607 YP_001502070.1 CDS Spea_2215 NC_009901.1 2688412 2689026 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2688412..2689026 Shewanella pealeana ATCC 700345 5662608 YP_001502071.1 CDS Spea_2216 NC_009901.1 2689038 2689214 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: sdn:Sden_1849 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2689038..2689214 Shewanella pealeana ATCC 700345 5662609 YP_001502072.1 CDS Spea_2217 NC_009901.1 2689214 2690170 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: sbl:Sbal_4490 hypothetical protein; cytochrome c oxidase, cbb3-type subunit III 2689214..2690170 Shewanella pealeana ATCC 700345 5662610 YP_001502073.1 CDS Spea_2218 NC_009901.1 2690320 2690799 D KEGG: slo:Shew_1989 hypothetical protein; hypothetical protein 2690320..2690799 Shewanella pealeana ATCC 700345 5662611 YP_001502074.1 CDS Spea_2219 NC_009901.1 2690867 2693251 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: shn:Shewana3_2112 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2690867..2693251 Shewanella pealeana ATCC 700345 5662612 YP_001502075.1 CDS Spea_2220 NC_009901.1 2693248 2693457 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: sfr:Sfri_2016 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2693248..2693457 Shewanella pealeana ATCC 700345 5662613 YP_001502076.1 CDS Spea_2221 NC_009901.1 2693454 2694146 D KEGG: sbl:Sbal_4494 hypothetical protein; hypothetical protein 2693454..2694146 Shewanella pealeana ATCC 700345 5662614 YP_001502077.1 CDS Spea_2222 NC_009901.1 2694204 2694956 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2694204..2694956 Shewanella pealeana ATCC 700345 5662615 YP_001502078.1 CDS Spea_2223 NC_009901.1 2695050 2695982 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2695050..2695982 Shewanella pealeana ATCC 700345 5662616 YP_001502079.1 CDS Spea_2224 NC_009901.1 2696062 2696997 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2696062..2696997 Shewanella pealeana ATCC 700345 5662617 YP_001502080.1 CDS Spea_2225 NC_009901.1 2697073 2697696 R KEGG: slo:Shew_1996 hypothetical protein; hypothetical protein complement(2697073..2697696) Shewanella pealeana ATCC 700345 5662618 YP_001502081.1 CDS Spea_2226 NC_009901.1 2697674 2698501 R KEGG: slo:Shew_1997 Bax protein, putative; Bax protein complement(2697674..2698501) Shewanella pealeana ATCC 700345 5662619 YP_001502082.1 CDS Spea_2227 NC_009901.1 2698664 2699575 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: slo:Shew_1998 protein of unknown function UPF0052 and CofD; hypothetical protein 2698664..2699575 Shewanella pealeana ATCC 700345 5662620 YP_001502083.1 CDS Spea_2228 NC_009901.1 2699690 2700883 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2699690..2700883) Shewanella pealeana ATCC 700345 5662621 YP_001502084.1 CDS Spea_2229 NC_009901.1 2701154 2702440 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2701154..2702440) Shewanella pealeana ATCC 700345 5662622 YP_001502085.1 CDS Spea_2230 NC_009901.1 2702459 2702833 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2702459..2702833) Shewanella pealeana ATCC 700345 5662623 YP_001502086.1 CDS Spea_2231 NC_009901.1 2702826 2704157 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: slo:Shew_2022 AAA ATPase, central domain protein; recombination factor protein RarA complement(2702826..2704157) Shewanella pealeana ATCC 700345 5662624 YP_001502087.1 CDS Spea_2232 NC_009901.1 2704167 2704793 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shn:Shewana3_2051 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(2704167..2704793) Shewanella pealeana ATCC 700345 5662625 YP_001502088.1 CDS Spea_2233 NC_009901.1 2704860 2707409 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: slo:Shew_2024 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(2704860..2707409) Shewanella pealeana ATCC 700345 5662626 YP_001502089.1 CDS Spea_2234 NC_009901.1 2707600 2708103 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(2707600..2708103) Shewanella pealeana ATCC 700345 5662627 YP_001502090.1 CDS Spea_2235 NC_009901.1 2708284 2709399 D TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: slo:Shew_2026 alanine dehydrogenase; alanine dehydrogenase 2708284..2709399 Shewanella pealeana ATCC 700345 5662628 YP_001502091.1 CDS Spea_2236 NC_009901.1 2709460 2710143 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_2426 DNA-binding response regulator; two component transcriptional regulator complement(2709460..2710143) Shewanella pealeana ATCC 700345 5662629 YP_001502092.1 CDS Spea_2237 NC_009901.1 2710313 2712085 R PFAM: protein of unknown function DUF885; KEGG: sbm:Shew185_2005 protein of unknown function DUF885; hypothetical protein complement(2710313..2712085) Shewanella pealeana ATCC 700345 5662630 YP_001502093.1 CDS Spea_2238 NC_009901.1 2712235 2714160 R KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(2712235..2714160) Shewanella pealeana ATCC 700345 5662631 YP_001502094.1 CDS Spea_2239 NC_009901.1 2714229 2715110 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: slo:Shew_1933 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(2714229..2715110) Shewanella pealeana ATCC 700345 5662632 YP_001502095.1 CDS cls NC_009901.1 2715271 2716728 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2715271..2716728 Shewanella pealeana ATCC 700345 5662633 YP_001502096.1 CDS Spea_2241 NC_009901.1 2716796 2717467 D KEGG: she:Shewmr4_3608 hypothetical protein; hypothetical protein 2716796..2717467 Shewanella pealeana ATCC 700345 5662634 YP_001502097.1 CDS Spea_2242 NC_009901.1 2717834 2719828 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: sbm:Shew185_1950 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2717834..2719828) Shewanella pealeana ATCC 700345 5664757 YP_001502098.1 CDS Spea_2243 NC_009901.1 2720017 2721084 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2720017..2721084) Shewanella pealeana ATCC 700345 5662636 YP_001502099.1 CDS Spea_2244 NC_009901.1 2721214 2722836 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: sbm:Shew185_2151 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; dihydrolipoamide acetyltransferase complement(2721214..2722836) Shewanella pealeana ATCC 700345 5662637 YP_001502100.1 CDS Spea_2245 NC_009901.1 2722846 2723823 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbl:Sbal_4507 hypothetical protein; transketolase central region complement(2722846..2723823) Shewanella pealeana ATCC 700345 5662638 YP_001502101.1 CDS Spea_2246 NC_009901.1 2723827 2725005 R PFAM: dehydrogenase E1 component; KEGG: slo:Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase complement(2723827..2725005) Shewanella pealeana ATCC 700345 5662639 YP_001502102.1 CDS Spea_2247 NC_009901.1 2725188 2726225 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2725188..2726225) Shewanella pealeana ATCC 700345 5662640 YP_001502103.1 CDS Spea_2248 NC_009901.1 2726486 2726965 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: sfr:Sfri_1933 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 2726486..2726965 Shewanella pealeana ATCC 700345 5662641 YP_001502104.1 CDS Spea_2249 NC_009901.1 2727127 2727570 R KEGG: sfr:Sfri_2052 hypothetical protein; hypothetical protein complement(2727127..2727570) Shewanella pealeana ATCC 700345 5662642 YP_001502105.1 CDS Spea_2250 NC_009901.1 2728173 2728463 D hypothetical protein 2728173..2728463 Shewanella pealeana ATCC 700345 5662643 YP_001502106.1 CDS Spea_2251 NC_009901.1 2729423 2729785 R PFAM: conserved hypothetical protein; KEGG: vfi:VF1977 protein YgiW precursor; hypothetical protein complement(2729423..2729785) Shewanella pealeana ATCC 700345 5662644 YP_001502107.1 CDS Spea_2252 NC_009901.1 2730078 2732093 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2144 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(2730078..2732093) Shewanella pealeana ATCC 700345 5662645 YP_001502108.1 CDS Spea_2253 NC_009901.1 2732249 2734090 D KEGG: slo:Shew_1941 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA 2732249..2734090 Shewanella pealeana ATCC 700345 5662646 YP_001502109.1 CDS ansA NC_009901.1 2734394 2735410 D converts asparagine to aspartate and ammonia; asparaginase 2734394..2735410 Shewanella pealeana ATCC 700345 5662647 YP_001502110.1 CDS Spea_2255 NC_009901.1 2735760 2736041 R PFAM: protein of unknown function DUF1315; KEGG: slo:Shew_1939 protein of unknown function DUF1315; hypothetical protein complement(2735760..2736041) Shewanella pealeana ATCC 700345 5662648 YP_001502111.1 CDS Spea_2256 NC_009901.1 2736038 2736355 R KEGG: slo:Shew_1938 hypothetical protein; hypothetical protein complement(2736038..2736355) Shewanella pealeana ATCC 700345 5662649 YP_001502112.1 CDS Spea_2257 NC_009901.1 2736417 2737544 R PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_1937 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A complement(2736417..2737544) Shewanella pealeana ATCC 700345 5662650 YP_001502113.1 CDS Spea_2258 NC_009901.1 2737834 2738784 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2028 thioredoxin reductase; thioredoxin reductase 2737834..2738784 Shewanella pealeana ATCC 700345 5662651 YP_001502114.1 CDS Spea_2259 NC_009901.1 2738883 2739491 R PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1712 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2738883..2739491) Shewanella pealeana ATCC 700345 5662652 YP_001502115.1 CDS rplT NC_009901.1 2739653 2740012 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2739653..2740012) Shewanella pealeana ATCC 700345 5662653 YP_001502116.1 CDS rpmI NC_009901.1 2740031 2740225 R PFAM: ribosomal protein L35; KEGG: slo:Shew_2030 ribosomal protein L35; 50S ribosomal protein L35 complement(2740031..2740225) Shewanella pealeana ATCC 700345 5662654 YP_001502117.1 CDS Spea_2262 NC_009901.1 2740313 2740789 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: slo:Shew_2031 translation initiation factor IF-3; translation initiation factor IF-3 complement(2740313..2740789) Shewanella pealeana ATCC 700345 5662655 YP_001502118.1 CDS Spea_2263 NC_009901.1 2740859 2742787 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(2740859..2742787) Shewanella pealeana ATCC 700345 5662656 YP_001502119.1 CDS Spea_2264 NC_009901.1 2743074 2743340 D hypothetical protein 2743074..2743340 Shewanella pealeana ATCC 700345 5662657 YP_001502120.1 CDS Spea_2265 NC_009901.1 2743471 2744208 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: saz:Sama_1764 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2743471..2744208 Shewanella pealeana ATCC 700345 5662658 YP_001502121.1 CDS Spea_2266 NC_009901.1 2744211 2744411 D KEGG: shn:Shewana3_2041 hypothetical protein; hypothetical protein 2744211..2744411 Shewanella pealeana ATCC 700345 5662659 YP_001502122.1 CDS Spea_2267 NC_009901.1 2744451 2745068 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2744451..2745068) Shewanella pealeana ATCC 700345 5662660 YP_001502123.1 CDS Spea_2268 NC_009901.1 2745103 2746461 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: slo:Shew_2037 MATE efflux family protein; MATE efflux family protein 2745103..2746461 Shewanella pealeana ATCC 700345 5662661 YP_001502124.1 CDS Spea_2269 NC_009901.1 2746572 2746706 D KEGG: sfr:Sfri_3563 transposase; transposase 2746572..2746706 Shewanella pealeana ATCC 700345 5662662 YP_001502125.1 CDS Spea_2270 NC_009901.1 2746961 2747440 D PFAM: PEBP family protein; KEGG: aeh:Mlg_1616 YbhB and YbcL; PEBP family protein 2746961..2747440 Shewanella pealeana ATCC 700345 5662663 YP_001502126.1 CDS Spea_2271 NC_009901.1 2747821 2749002 R PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE3963 conserved integral membrane protein; hypothetical protein complement(2747821..2749002) Shewanella pealeana ATCC 700345 5662664 YP_001502127.1 CDS Spea_2272 NC_009901.1 2749502 2751547 R PFAM: pentapeptide repeat protein; KEGG: vpa:VPA1301 hypothetical protein; pentapeptide repeat-containing protein complement(2749502..2751547) Shewanella pealeana ATCC 700345 5662665 YP_001502128.1 CDS Spea_2273 NC_009901.1 2752263 2752703 R hypothetical protein complement(2752263..2752703) Shewanella pealeana ATCC 700345 5662666 YP_001502129.1 CDS Spea_2274 NC_009901.1 2752832 2753257 R PFAM: GCN5-related N-acetyltransferase; KEGG: vha:VIBHAR_05434 hypothetical protein; N-acetyltransferase GCN5 complement(2752832..2753257) Shewanella pealeana ATCC 700345 5662667 YP_001502130.1 CDS Spea_2275 NC_009901.1 2753371 2754312 R KEGG: sdn:Sden_1029 hypothetical protein; hypothetical protein complement(2753371..2754312) Shewanella pealeana ATCC 700345 5662668 YP_001502131.1 CDS Spea_2276 NC_009901.1 2755175 2757103 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sdn:Sden_1155 radical SAM; radical SAM domain-containing protein 2755175..2757103 Shewanella pealeana ATCC 700345 5662669 YP_001502132.1 CDS Spea_2277 NC_009901.1 2757455 2758465 R PFAM: peptidase S15; KEGG: sde:Sde_2300 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like; peptidase S15 complement(2757455..2758465) Shewanella pealeana ATCC 700345 5662670 YP_001502133.1 CDS Spea_2278 NC_009901.1 2758794 2759069 R hypothetical protein complement(2758794..2759069) Shewanella pealeana ATCC 700345 5662671 YP_001502134.1 CDS Spea_2279 NC_009901.1 2760829 2762043 R PFAM: major facilitator superfamily MFS_1; KEGG: vfi:VFA0067 oxalate/formate antiporter; major facilitator transporter complement(2760829..2762043) Shewanella pealeana ATCC 700345 5664763 YP_001502135.1 CDS Spea_2280 NC_009901.1 2762438 2762935 R KEGG: sfr:Sfri_0770 hypothetical protein; hypothetical protein complement(2762438..2762935) Shewanella pealeana ATCC 700345 5662673 YP_001502136.1 CDS Spea_2281 NC_009901.1 2763350 2763874 D KEGG: bld:BLi00510 YdaE; hypothetical protein 2763350..2763874 Shewanella pealeana ATCC 700345 5662674 YP_001502137.1 CDS Spea_2282 NC_009901.1 2763910 2764911 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rru:Rru_A0247 periplasmic binding protein/LacI transcriptional regulator; periplasmic-binding protein/LacI transcriptional regulator complement(2763910..2764911) Shewanella pealeana ATCC 700345 5662675 YP_001502138.1 CDS Spea_2283 NC_009901.1 2764984 2766021 R PFAM: inner-membrane translocator; KEGG: ypi:YpsIP31758_0911 ribose ABC transporter, permease protein; monosaccharide-transporting ATPase complement(2764984..2766021) Shewanella pealeana ATCC 700345 5662676 YP_001502139.1 CDS Spea_2284 NC_009901.1 2766032 2767516 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0612 sugar ABC transporter ATP-binding component; ABC transporter-like protein complement(2766032..2767516) Shewanella pealeana ATCC 700345 5662677 YP_001502140.1 CDS Spea_2285 NC_009901.1 2767509 2769026 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: mmw:Mmwyl1_1989 xylulokinase; xylulokinase complement(2767509..2769026) Shewanella pealeana ATCC 700345 5662678 YP_001502141.1 CDS Spea_2286 NC_009901.1 2769030 2770064 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plu:plu1960 hypothetical protein; alcohol dehydrogenase complement(2769030..2770064) Shewanella pealeana ATCC 700345 5662679 YP_001502142.1 CDS Spea_2287 NC_009901.1 2770396 2771385 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: hch:HCH_02466 transcriptional regulator; LacI family transcriptional regulator 2770396..2771385 Shewanella pealeana ATCC 700345 5662680 YP_001502143.1 CDS Spea_2288 NC_009901.1 2771705 2773315 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA1657 putative Uup, ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter-like protein 2771705..2773315 Shewanella pealeana ATCC 700345 5662681 YP_001502144.1 CDS Spea_2289 NC_009901.1 2773448 2774098 R PFAM: transferase hexapeptide repeat containing protein; KEGG: vha:VIBHAR_07054 hypothetical protein; hexapaptide repeat-containing transferase complement(2773448..2774098) Shewanella pealeana ATCC 700345 5662682 YP_001502145.1 CDS Spea_2290 NC_009901.1 2774152 2775009 R PFAM: phospholipase A1; KEGG: vha:VIBHAR_02841 hypothetical protein; phospholipase A1 complement(2774152..2775009) Shewanella pealeana ATCC 700345 5662683 YP_001502146.1 CDS Spea_2291 NC_009901.1 2775396 2777381 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2775396..2777381) Shewanella pealeana ATCC 700345 5662684 YP_001502147.1 CDS Spea_2292 NC_009901.1 2777679 2780669 R PFAM: UvrD/REP helicase; DNA topoisomerase type IA zn finger domain protein; KEGG: sfr:Sfri_0452 UvrD/REP helicase; UvrD/REP helicase complement(2777679..2780669) Shewanella pealeana ATCC 700345 5662685 YP_001502148.1 CDS Spea_2293 NC_009901.1 2781046 2781396 D hypothetical protein 2781046..2781396 Shewanella pealeana ATCC 700345 5662686 YP_001502149.1 CDS Spea_2294 NC_009901.1 2781639 2782721 D PFAM: protein of unknown function UPF0118; KEGG: vfi:VF2136 hypothetical membrane spanning protein; hypothetical protein 2781639..2782721 Shewanella pealeana ATCC 700345 5662687 YP_001502150.1 CDS Spea_2295 NC_009901.1 2782955 2784538 D PFAM: glutathione synthase; glutathione synthase ATP-binding; KEGG: shn:Shewana3_2339 glutathione synthase, ATP-binding; glutathione synthase 2782955..2784538 Shewanella pealeana ATCC 700345 5662688 YP_001502151.1 CDS Spea_2296 NC_009901.1 2784744 2787185 R KEGG: saz:Sama_1875 hypothetical protein; hypothetical protein complement(2784744..2787185) Shewanella pealeana ATCC 700345 5662689 YP_001502152.1 CDS Spea_2297 NC_009901.1 2787185 2787814 R KEGG: saz:Sama_1874 hypothetical protein; hypothetical protein complement(2787185..2787814) Shewanella pealeana ATCC 700345 5662690 YP_001502153.1 CDS Spea_2298 NC_009901.1 2787978 2791259 D PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; histidine kinase dimerisation and phosphoacceptor region; KEGG: saz:Sama_1872 sensor histidine kinase; histidine kinase 2787978..2791259 Shewanella pealeana ATCC 700345 5662691 YP_001502154.1 CDS Spea_2299 NC_009901.1 2791252 2791917 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: saz:Sama_1873 response regulator receiver protein; two component LuxR family transcriptional regulator 2791252..2791917 Shewanella pealeana ATCC 700345 5662692 YP_001502155.1 CDS Spea_2300 NC_009901.1 2792348 2794168 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: saz:Sama_1876 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2792348..2794168 Shewanella pealeana ATCC 700345 5662693 YP_001502156.1 CDS Spea_2301 NC_009901.1 2794293 2795201 R KEGG: ppr:PBPRB0896 hypothetical protein; hypothetical protein complement(2794293..2795201) Shewanella pealeana ATCC 700345 5662694 YP_001502157.1 CDS Spea_2302 NC_009901.1 2795304 2795882 D KEGG: sfr:Sfri_2082 hypothetical protein; hypothetical protein 2795304..2795882 Shewanella pealeana ATCC 700345 5662695 YP_001502158.1 CDS Spea_2303 NC_009901.1 2796192 2798228 D KEGG: sfr:Sfri_2083 hypothetical protein; hypothetical protein 2796192..2798228 Shewanella pealeana ATCC 700345 5662696 YP_001502159.1 CDS Spea_2304 NC_009901.1 2798257 2799402 D KEGG: rrs:RoseRS_0345 hypothetical protein; hypothetical protein 2798257..2799402 Shewanella pealeana ATCC 700345 5662697 YP_001502160.1 CDS Spea_2305 NC_009901.1 2799563 2800672 D KEGG: ent:Ent638_0472 hypothetical protein; hypothetical protein 2799563..2800672 Shewanella pealeana ATCC 700345 5662698 YP_001502161.1 CDS Spea_2306 NC_009901.1 2800665 2802431 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ent:Ent638_0471 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase)/FAD synthetase and related enzyme; hypothetical protein 2800665..2802431 Shewanella pealeana ATCC 700345 5662699 YP_001502162.1 CDS Spea_2307 NC_009901.1 2802433 2804463 D PFAM: SMC domain protein; KEGG: ent:Ent638_0470 SMC domain protein; SMC domain-containing protein 2802433..2804463 Shewanella pealeana ATCC 700345 5662700 YP_001502163.1 CDS Spea_2308 NC_009901.1 2804463 2804831 D PFAM: Domain of unknown function DUF1832; KEGG: ent:Ent638_0469 hypothetical protein; hypothetical protein 2804463..2804831 Shewanella pealeana ATCC 700345 5662701 YP_001502164.1 CDS Spea_2309 NC_009901.1 2804938 2807730 R PFAM: sigma-70 region 4 domain protein; KEGG: fal:FRAAL2026 RNA polymerase essential primary sigma 70 factor; sigma-70 region 4 domain-containing protein complement(2804938..2807730) Shewanella pealeana ATCC 700345 5662702 YP_001502165.1 CDS Spea_2310 NC_009901.1 2807742 2808128 R hypothetical protein complement(2807742..2808128) Shewanella pealeana ATCC 700345 5662703 YP_001502166.1 CDS Spea_2311 NC_009901.1 2808131 2809195 R KEGG: mbu:Mbur_1538 ATPase involved in DNA repair-like protein; hypothetical protein complement(2808131..2809195) Shewanella pealeana ATCC 700345 5662704 YP_001502167.1 CDS Spea_2312 NC_009901.1 2809332 2810114 R KEGG: hwa:HQ2075A predicted ATPase invovled in DNA repair; hypothetical protein complement(2809332..2810114) Shewanella pealeana ATCC 700345 5662705 YP_001502168.1 CDS Spea_2313 NC_009901.1 2810301 2812421 R PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: gur:Gura_2481 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(2810301..2812421) Shewanella pealeana ATCC 700345 5662706 YP_001502169.1 CDS Spea_2314 NC_009901.1 2812791 2813660 R SMART: HNH nuclease; KEGG: plu:plu4325 hypothetical protein; HNH nuclease complement(2812791..2813660) Shewanella pealeana ATCC 700345 5662707 YP_001502170.1 CDS Spea_2315 NC_009901.1 2813885 2819116 R KEGG: ent:Ent638_0466 hypothetical protein; hypothetical protein complement(2813885..2819116) Shewanella pealeana ATCC 700345 5662708 YP_001502171.1 CDS Spea_2316 NC_009901.1 2819088 2820437 R KEGG: pha:PSHAb0090 putative orphan protein; putative orphan protein complement(2819088..2820437) Shewanella pealeana ATCC 700345 5662709 YP_001502172.1 CDS Spea_2317 NC_009901.1 2820440 2822035 R KEGG: pha:PSHAb0089 hypothetical protein; hypothetical protein complement(2820440..2822035) Shewanella pealeana ATCC 700345 5662710 YP_001502173.1 CDS Spea_2318 NC_009901.1 2822648 2822950 R PFAM: protein of unknown function UPF0153; KEGG: cps:CPS_2552 hypothetical protein; hypothetical protein complement(2822648..2822950) Shewanella pealeana ATCC 700345 5662711 YP_001502174.1 CDS Spea_2319 NC_009901.1 2823102 2824382 R TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: sfr:Sfri_1860 putative AcnD-accessory protein PrpF; putative AcnD-accessory protein PrpF complement(2823102..2824382) Shewanella pealeana ATCC 700345 5662712 YP_001502175.1 CDS Spea_2320 NC_009901.1 2824628 2827267 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2824628..2827267) Shewanella pealeana ATCC 700345 5662713 YP_001502176.1 CDS Spea_2321 NC_009901.1 2827508 2828662 R KEGG: slo:Shew_1821 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II complement(2827508..2828662) Shewanella pealeana ATCC 700345 5662714 YP_001502177.1 CDS prpB NC_009901.1 2828831 2829709 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(2828831..2829709) Shewanella pealeana ATCC 700345 5662715 YP_001502178.1 CDS Spea_2323 NC_009901.1 2829873 2830535 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pat:Patl_1418 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2829873..2830535) Shewanella pealeana ATCC 700345 5662716 YP_001502179.1 CDS Spea_2324 NC_009901.1 2830886 2833582 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: shm:Shewmr7_1876 CoA-binding domain protein; N-acetyltransferase GCN5 2830886..2833582 Shewanella pealeana ATCC 700345 5662717 YP_001502180.1 CDS Spea_2325 NC_009901.1 2833701 2834753 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2040 diguanylate cyclase; diguanylate cyclase complement(2833701..2834753) Shewanella pealeana ATCC 700345 5662718 YP_001502181.1 CDS Spea_2326 NC_009901.1 2834856 2836499 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: slo:Shew_2041 protein of unknown function DUF1705; sulfatase complement(2834856..2836499) Shewanella pealeana ATCC 700345 5662719 YP_001502182.1 CDS Spea_2327 NC_009901.1 2836841 2837260 R PFAM: regulatory protein MarR; KEGG: sbm:Shew185_2256 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2836841..2837260) Shewanella pealeana ATCC 700345 5662720 YP_001502183.1 CDS Spea_2328 NC_009901.1 2837287 2838264 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: slo:Shew_2043 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2837287..2838264) Shewanella pealeana ATCC 700345 5662721 YP_001502184.1 CDS Spea_2329 NC_009901.1 2838728 2839309 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2838728..2839309 Shewanella pealeana ATCC 700345 5662722 YP_001502185.1 CDS Spea_2330 NC_009901.1 2839363 2840091 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit complement(2839363..2840091) Shewanella pealeana ATCC 700345 5662723 YP_001502186.1 CDS Spea_2331 NC_009901.1 2840208 2840591 R KEGG: sfr:Sfri_3563 transposase; transposase complement(2840208..2840591) Shewanella pealeana ATCC 700345 5662724 YP_001502187.1 CDS Spea_2332 NC_009901.1 2840688 2841335 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2840688..2841335) Shewanella pealeana ATCC 700345 5662725 YP_001502188.1 CDS Spea_2333 NC_009901.1 2841357 2843183 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2841357..2843183) Shewanella pealeana ATCC 700345 5662726 YP_001502189.1 CDS Spea_2334 NC_009901.1 2843193 2843897 R TIGRFAM: 6-phosphogluconolactonase; KEGG: slo:Shew_2047 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(2843193..2843897) Shewanella pealeana ATCC 700345 5662727 YP_001502190.1 CDS Spea_2335 NC_009901.1 2843908 2845404 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2843908..2845404) Shewanella pealeana ATCC 700345 5662728 YP_001502191.1 CDS Spea_2336 NC_009901.1 2845696 2846550 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2845696..2846550 Shewanella pealeana ATCC 700345 5662729 YP_001502192.1 CDS Spea_2337 NC_009901.1 2846735 2848171 D KEGG: slo:Shew_2050 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 2846735..2848171 Shewanella pealeana ATCC 700345 5662730 YP_001502193.1 CDS Spea_2338 NC_009901.1 2848256 2850538 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2848256..2850538) Shewanella pealeana ATCC 700345 5662731 YP_001502194.1 CDS Spea_2339 NC_009901.1 2850544 2851191 R PFAM: regulatory protein TetR; KEGG: slo:Shew_2052 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2850544..2851191) Shewanella pealeana ATCC 700345 5662732 YP_001502195.1 CDS Spea_2340 NC_009901.1 2851374 2853212 D PFAM: peptidase M2 peptidyl-dipeptidase A; KEGG: slo:Shew_2053 peptidyl-dipeptidase A; peptidyl-dipeptidase A 2851374..2853212 Shewanella pealeana ATCC 700345 5662733 YP_001502196.1 CDS Spea_2341 NC_009901.1 2853331 2853921 R PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 complement(2853331..2853921) Shewanella pealeana ATCC 700345 5662734 YP_001502197.1 CDS Spea_2342 NC_009901.1 2854089 2854673 D KEGG: slo:Shew_2055 hypothetical protein; hypothetical protein 2854089..2854673 Shewanella pealeana ATCC 700345 5662735 YP_001502198.1 CDS Spea_2343 NC_009901.1 2854760 2855239 D PFAM: SEC-C motif domain protein; KEGG: sfr:Sfri_1884 sec-C motif domain protein; SecC motif-containing protein 2854760..2855239 Shewanella pealeana ATCC 700345 5662736 YP_001502199.1 CDS Spea_2344 NC_009901.1 2855384 2857558 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: slo:Shew_2057 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor(s)-containing diguanylate cyclase/phosphodiesterase complement(2855384..2857558) Shewanella pealeana ATCC 700345 5662737 YP_001502200.1 CDS Spea_2345 NC_009901.1 2857686 2857973 R KEGG: slo:Shew_2058 hypothetical protein; hypothetical protein complement(2857686..2857973) Shewanella pealeana ATCC 700345 5662738 YP_001502201.1 CDS Spea_2346 NC_009901.1 2858049 2858600 R KEGG: shn:Shewana3_2162 hypothetical protein; hypothetical protein complement(2858049..2858600) Shewanella pealeana ATCC 700345 5662739 YP_001502202.1 CDS Spea_2347 NC_009901.1 2859892 2860968 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbm:Shew185_2117 pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 2859892..2860968 Shewanella pealeana ATCC 700345 5664768 YP_001502203.1 CDS Spea_2348 NC_009901.1 2861089 2861757 R PFAM: Radical SAM domain protein; KEGG: son:SO_2501 radical activating enzyme; radical SAM domain-containing protein complement(2861089..2861757) Shewanella pealeana ATCC 700345 5662741 YP_001502204.1 CDS Spea_2349 NC_009901.1 2861885 2862568 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sbl:Sbal_4541 hypothetical protein; exsB protein 2861885..2862568 Shewanella pealeana ATCC 700345 5662742 YP_001502205.1 CDS Spea_2350 NC_009901.1 2862562 2863164 D PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein; rhomboid family protein 2862562..2863164 Shewanella pealeana ATCC 700345 5662743 YP_001502206.1 CDS Spea_2351 NC_009901.1 2863253 2865256 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2863253..2865256) Shewanella pealeana ATCC 700345 5662744 YP_001502207.1 CDS Spea_2352 NC_009901.1 2867204 2869120 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sbl:Sbal_4544 hypothetical protein; diguanylate cyclase/phosphodiesterase 2867204..2869120 Shewanella pealeana ATCC 700345 5664775 YP_001502208.1 CDS Spea_2353 NC_009901.1 2869229 2869807 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E 2869229..2869807 Shewanella pealeana ATCC 700345 5662746 YP_001502209.1 CDS Spea_2354 NC_009901.1 2869810 2870379 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2869810..2870379 Shewanella pealeana ATCC 700345 5662747 YP_001502210.1 CDS Spea_2355 NC_009901.1 2870373 2872850 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2870373..2872850 Shewanella pealeana ATCC 700345 5662748 YP_001502211.1 CDS rnfD NC_009901.1 2872854 2873906 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2872854..2873906 Shewanella pealeana ATCC 700345 5662749 YP_001502212.1 CDS Spea_2357 NC_009901.1 2873937 2874560 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2873937..2874560 Shewanella pealeana ATCC 700345 5662750 YP_001502213.1 CDS Spea_2358 NC_009901.1 2874557 2875252 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2874557..2875252 Shewanella pealeana ATCC 700345 5662751 YP_001502214.1 CDS Spea_2359 NC_009901.1 2875294 2875935 D KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 2875294..2875935 Shewanella pealeana ATCC 700345 5662752 YP_001502215.1 CDS Spea_2360 NC_009901.1 2876595 2877005 D KEGG: shm:Shewmr7_1867 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2876595..2877005 Shewanella pealeana ATCC 700345 5662753 YP_001502216.1 CDS Spea_2361 NC_009901.1 2877064 2879673 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_2074 TonB-dependent receptor; TonB-dependent receptor complement(2877064..2879673) Shewanella pealeana ATCC 700345 5662754 YP_001502217.1 CDS ruvB NC_009901.1 2880551 2881564 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2880551..2881564) Shewanella pealeana ATCC 700345 5662755 YP_001502218.1 CDS ruvA NC_009901.1 2881574 2882191 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2881574..2882191) Shewanella pealeana ATCC 700345 5662756 YP_001502219.1 CDS ruvC NC_009901.1 2882188 2882709 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(2882188..2882709) Shewanella pealeana ATCC 700345 5662757 YP_001502220.1 CDS Spea_2365 NC_009901.1 2882717 2883460 R PFAM: protein of unknown function DUF28; KEGG: slo:Shew_2078 protein of unknown function DUF28; hypothetical protein complement(2882717..2883460) Shewanella pealeana ATCC 700345 5662758 YP_001502221.1 CDS aspS NC_009901.1 2883590 2885383 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2883590..2885383) Shewanella pealeana ATCC 700345 5662759 YP_001502222.1 CDS Spea_2367 NC_009901.1 2885554 2888325 R KEGG: shw:Sputw3181_2074 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; myoactive tetradecapeptide family protein; SMART: extracellular solute-binding protein family 3; diguanylate cyclase complement(2885554..2888325) Shewanella pealeana ATCC 700345 5662760 YP_001502223.1 CDS Spea_2368 NC_009901.1 2888514 2889245 D TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_2081 putative methyltransferase; putative methyltransferase 2888514..2889245 Shewanella pealeana ATCC 700345 5662761 YP_001502224.1 CDS Spea_2369 NC_009901.1 2889242 2890234 D TIGRFAM: putative methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: sbm:Shew185_2310 putative methyltransferase; putative methyltransferase 2889242..2890234 Shewanella pealeana ATCC 700345 5662762 YP_001502225.1 CDS Spea_2370 NC_009901.1 2890258 2891013 D PFAM: protein of unknown function DUF785; KEGG: slo:Shew_2083 protein of unknown function DUF785; hypothetical protein 2890258..2891013 Shewanella pealeana ATCC 700345 5662763 YP_001502226.1 CDS Spea_2371 NC_009901.1 2891025 2892533 D KEGG: slo:Shew_2084 gonadoliberin III-related protein; gonadoliberin III-like protein 2891025..2892533 Shewanella pealeana ATCC 700345 5662764 YP_001502227.1 CDS Spea_2372 NC_009901.1 2892533 2893483 D TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: slo:Shew_2085 alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein 2892533..2893483 Shewanella pealeana ATCC 700345 5662765 YP_001502228.1 CDS Spea_2373 NC_009901.1 2893452 2895194 D KEGG: spc:Sputcn32_1931 peptidase M3A and M3B, thimet/oligopeptidase F; peptidase M3A and M3B, thimet/oligopeptidase F 2893452..2895194 Shewanella pealeana ATCC 700345 5662766 YP_001502229.1 CDS Spea_2374 NC_009901.1 2895139 2896233 D KEGG: slo:Shew_2087 hypothetical protein; hypothetical protein 2895139..2896233 Shewanella pealeana ATCC 700345 5662767 YP_001502230.1 CDS Spea_2375 NC_009901.1 2896373 2898793 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vfi:VFA0360 sensory transduction protein kinase; histidine kinase complement(2896373..2898793) Shewanella pealeana ATCC 700345 5662768 YP_001502231.1 CDS Spea_2376 NC_009901.1 2898952 2899200 R KEGG: saz:Sama_1854 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(2898952..2899200) Shewanella pealeana ATCC 700345 5662769 YP_001502232.1 CDS Spea_2377 NC_009901.1 2899423 2899785 D PFAM: response regulator receiver; KEGG: slo:Shew_0703 response regulator receiver protein; response regulator receiver protein 2899423..2899785 Shewanella pealeana ATCC 700345 5662770 YP_001502233.1 CDS thiH NC_009901.1 2900354 2901460 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2900354..2901460) Shewanella pealeana ATCC 700345 5662771 YP_001502234.1 CDS Spea_2379 NC_009901.1 2901488 2902252 R PFAM: thiazole biosynthesis family protein; KEGG: sfr:Sfri_2197 thiazole biosynthesis family protein; thiazole biosynthesis family protein complement(2901488..2902252) Shewanella pealeana ATCC 700345 5662772 YP_001502235.1 CDS Spea_2380 NC_009901.1 2902254 2902487 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: shw:Sputw3181_2083 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(2902254..2902487) Shewanella pealeana ATCC 700345 5662773 YP_001502236.1 CDS Spea_2381 NC_009901.1 2902480 2903316 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: shn:Shewana3_1938 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein complement(2902480..2903316) Shewanella pealeana ATCC 700345 5662774 YP_001502237.1 CDS Spea_2382 NC_009901.1 2903306 2904898 R KEGG: son:SO_2444 phosphomethylpyrimidine kinase / thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase complement(2903306..2904898) Shewanella pealeana ATCC 700345 5662775 YP_001502238.1 CDS Spea_2383 NC_009901.1 2904901 2906904 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2904901..2906904) Shewanella pealeana ATCC 700345 5662776 YP_001502239.1 CDS Spea_2384 NC_009901.1 2907380 2908291 R KEGG: shn:Shewana3_1935 hypothetical protein; hypothetical protein complement(2907380..2908291) Shewanella pealeana ATCC 700345 5662777 YP_001502240.1 CDS Spea_2385 NC_009901.1 2908535 2909284 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sbm:Shew185_2325 channel protein, hemolysin III family; hemolysin III family channel protein 2908535..2909284 Shewanella pealeana ATCC 700345 5662778 YP_001502241.1 CDS Spea_2386 NC_009901.1 2909344 2909859 R PFAM: DTW domain containing protein; KEGG: slo:Shew_2099 DTW domain containing protein; DTW domain-containing protein complement(2909344..2909859) Shewanella pealeana ATCC 700345 5662779 YP_001502242.1 CDS def NC_009901.1 2910137 2910628 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2910137..2910628) Shewanella pealeana ATCC 700345 5662780 YP_001502243.1 CDS Spea_2388 NC_009901.1 2910896 2912617 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_2104 major facilitator superfamily MFS_1; major facilitator transporter 2910896..2912617 Shewanella pealeana ATCC 700345 5662781 YP_001502244.1 CDS Spea_2389 NC_009901.1 2912789 2913460 R hypothetical protein complement(2912789..2913460) Shewanella pealeana ATCC 700345 5662782 YP_001502245.1 CDS Spea_2390 NC_009901.1 2913671 2914024 D PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: shn:Shewana3_2320 methylated-DNA-(protein)-cysteine S-methyltransferase; DNA binding methylated-DNA-(protein)-cysteine S-methyltransferase 2913671..2914024 Shewanella pealeana ATCC 700345 5662783 YP_001502246.1 CDS Spea_2391 NC_009901.1 2914046 2914831 D KEGG: she:Shewmr4_2144 hypothetical protein; hypothetical protein 2914046..2914831 Shewanella pealeana ATCC 700345 5662784 YP_001502247.1 CDS Spea_2392 NC_009901.1 2914909 2915694 R PFAM: glutamine amidotransferase class-II; KEGG: slo:Shew_2107 glutamine amidotransferase, class-II; glutamine amidotransferase complement(2914909..2915694) Shewanella pealeana ATCC 700345 5662785 YP_001502248.1 CDS fadE NC_009901.1 2915939 2918386 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2915939..2918386 Shewanella pealeana ATCC 700345 5662786 YP_001502249.1 CDS Spea_2394 NC_009901.1 2918541 2919827 R KEGG: sfr:Sfri_0076 radical SAM domain protein; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; coproporphyrinogen dehydrogenase complement(2918541..2919827) Shewanella pealeana ATCC 700345 5662787 YP_001502250.1 CDS Spea_2395 NC_009901.1 2920216 2920587 R hypothetical protein complement(2920216..2920587) Shewanella pealeana ATCC 700345 5662788 YP_001502251.1 CDS Spea_2396 NC_009901.1 2920584 2920958 R hypothetical protein complement(2920584..2920958) Shewanella pealeana ATCC 700345 5662789 YP_001502252.1 CDS Spea_2397 NC_009901.1 2921392 2922684 R KEGG: ppr:PBPRB0447 putative serine transporter; putative serine transporter complement(2921392..2922684) Shewanella pealeana ATCC 700345 5662790 YP_001502253.1 CDS Spea_2398 NC_009901.1 2923555 2925525 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; CHASE3 domain protein; KEGG: ppr:PBPRA0989 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2923555..2925525 Shewanella pealeana ATCC 700345 5662791 YP_001502254.1 CDS Spea_2399 NC_009901.1 2925949 2926629 R KEGG: she:Shewmr4_1472 hypothetical protein; hypothetical protein complement(2925949..2926629) Shewanella pealeana ATCC 700345 5662792 YP_001502255.1 CDS Spea_2400 NC_009901.1 2926979 2928856 R PFAM: sodium/hydrogen exchanger; KEGG: sbm:Shew185_2017 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(2926979..2928856) Shewanella pealeana ATCC 700345 5662793 YP_001502256.1 CDS Spea_2401 NC_009901.1 2930138 2931472 R KEGG: slo:Shew_2110 hypothetical protein; hypothetical protein complement(2930138..2931472) Shewanella pealeana ATCC 700345 5664779 YP_001502257.1 CDS Spea_2402 NC_009901.1 2931483 2932211 R KEGG: slo:Shew_2111 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2931483..2932211) Shewanella pealeana ATCC 700345 5662795 YP_001502258.1 CDS rnhA NC_009901.1 2932212 2932769 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2932212..2932769 Shewanella pealeana ATCC 700345 5662796 YP_001502259.1 CDS Spea_2404 NC_009901.1 2932842 2933738 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_2013 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2932842..2933738) Shewanella pealeana ATCC 700345 5662797 YP_001502260.1 CDS Spea_2405 NC_009901.1 2933747 2934487 R PFAM: Methyltransferase type 11; KEGG: slo:Shew_2113 hypothetical protein; type 11 methyltransferase complement(2933747..2934487) Shewanella pealeana ATCC 700345 5662798 YP_001502261.1 CDS Spea_2406 NC_009901.1 2934626 2935417 D PFAM: beta-lactamase domain protein; KEGG: slo:Shew_2114 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2934626..2935417 Shewanella pealeana ATCC 700345 5662799 YP_001502262.1 CDS Spea_2407 NC_009901.1 2935508 2937067 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: slo:Shew_2115 lytic transglycosylase, catalytic; lytic transglycosylase 2935508..2937067 Shewanella pealeana ATCC 700345 5662800 YP_001502263.1 CDS Spea_2408 NC_009901.1 2937132 2937695 R KEGG: shw:Sputw3181_2251 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein complement(2937132..2937695) Shewanella pealeana ATCC 700345 5662801 YP_001502264.1 CDS Spea_2409 NC_009901.1 2937695 2939533 R PFAM: AsmA family protein; KEGG: slo:Shew_2116 AsmA family protein; AsmA family protein complement(2937695..2939533) Shewanella pealeana ATCC 700345 5662802 YP_001502265.1 CDS Spea_2410 NC_009901.1 2939618 2940115 R TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: sbm:Shew185_2007 regulator of ribonuclease activity A; ribonuclease activity A regulator complement(2939618..2940115) Shewanella pealeana ATCC 700345 5662803 YP_001502266.1 CDS Spea_2411 NC_009901.1 2940303 2940620 D KEGG: sbm:Shew185_2006 hypothetical protein; hypothetical protein 2940303..2940620 Shewanella pealeana ATCC 700345 5662804 YP_001502267.1 CDS Spea_2412 NC_009901.1 2941156 2941785 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(2941156..2941785) Shewanella pealeana ATCC 700345 5662805 YP_001502268.1 CDS Spea_2413 NC_009901.1 2941830 2942852 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(2941830..2942852) Shewanella pealeana ATCC 700345 5662806 YP_001502269.1 CDS Spea_2414 NC_009901.1 2943067 2944590 D PFAM: protein of unknown function DUF195; KEGG: slo:Shew_2124 protein of unknown function DUF195; hypothetical protein 2943067..2944590 Shewanella pealeana ATCC 700345 5662807 YP_001502270.1 CDS Spea_2415 NC_009901.1 2944618 2946549 D PFAM: Lytic transglycosylase catalytic; KEGG: slo:Shew_2125 lytic transglycosylase, catalytic; lytic transglycosylase 2944618..2946549 Shewanella pealeana ATCC 700345 5662808 YP_001502271.1 CDS Spea_2416 NC_009901.1 2946946 2947857 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: slo:Shew_2126 ATPase associated with various cellular activities, AAA_3; ATPase 2946946..2947857 Shewanella pealeana ATCC 700345 5662809 YP_001502272.1 CDS Spea_2417 NC_009901.1 2947930 2948946 D PFAM: protein of unknown function DUF58; KEGG: sbl:Sbal_4562 hypothetical protein; hypothetical protein 2947930..2948946 Shewanella pealeana ATCC 700345 5662810 YP_001502273.1 CDS Spea_2418 NC_009901.1 2948943 2951012 D PFAM: transglutaminase domain protein; KEGG: shw:Sputw3181_1903 transglutaminase domain protein; transglutaminase domain-containing protein 2948943..2951012 Shewanella pealeana ATCC 700345 5662811 YP_001502274.1 CDS Spea_2419 NC_009901.1 2951072 2954881 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: slo:Shew_2129 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2951072..2954881 Shewanella pealeana ATCC 700345 5662812 YP_001502275.1 CDS Spea_2420 NC_009901.1 2954883 2958599 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: slo:Shew_2130 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2954883..2958599 Shewanella pealeana ATCC 700345 5662813 YP_001502276.1 CDS Spea_2421 NC_009901.1 2958596 2960590 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: slo:Shew_2131 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 2958596..2960590 Shewanella pealeana ATCC 700345 5662814 YP_001502277.1 CDS ddl NC_009901.1 2960862 2961866 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2960862..2961866 Shewanella pealeana ATCC 700345 5662815 YP_001502278.1 CDS Spea_2423 NC_009901.1 2961950 2962702 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit complement(2961950..2962702) Shewanella pealeana ATCC 700345 5662816 YP_001502279.1 CDS Spea_2424 NC_009901.1 2962786 2963184 R KEGG: mmw:Mmwyl1_3491 transposase; transposase complement(2962786..2963184) Shewanella pealeana ATCC 700345 5662817 YP_001502280.1 CDS Spea_2425 NC_009901.1 2963294 2963893 R TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: saz:Sama_1624 periplasmic nitrate reductase C-type cytochrome, NapC/NirT; NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome complement(2963294..2963893) Shewanella pealeana ATCC 700345 5662818 YP_001502281.1 CDS Spea_2426 NC_009901.1 2963902 2964387 R PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shn:Shewana3_1901 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit NapB complement(2963902..2964387) Shewanella pealeana ATCC 700345 5662819 YP_001502282.1 CDS Spea_2427 NC_009901.1 2964400 2966889 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2964400..2966889) Shewanella pealeana ATCC 700345 5662820 YP_001502283.1 CDS Spea_2428 NC_009901.1 2966892 2967149 R PFAM: NapD family protein; KEGG: sbl:Sbal_1909 NapD family protein; NapD family protein complement(2966892..2967149) Shewanella pealeana ATCC 700345 5662821 YP_001502284.1 CDS Spea_2429 NC_009901.1 2967190 2967348 R PFAM: periplasmic nitrate reductase NapE; KEGG: slo:Shew_1768 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE complement(2967190..2967348) Shewanella pealeana ATCC 700345 5662822 YP_001502285.1 CDS Spea_2430 NC_009901.1 2968293 2972180 R KEGG: slo:Shew_1767 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(2968293..2972180) Shewanella pealeana ATCC 700345 5662823 YP_001502286.1 CDS Spea_2431 NC_009901.1 2972383 2972799 R PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein complement(2972383..2972799) Shewanella pealeana ATCC 700345 5662824 YP_001502287.1 CDS Spea_2432 NC_009901.1 2972942 2973544 R hypothetical protein complement(2972942..2973544) Shewanella pealeana ATCC 700345 5662825 YP_001502288.1 CDS Spea_2433 NC_009901.1 2973836 2974291 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(2973836..2974291) Shewanella pealeana ATCC 700345 5662826 YP_001502289.1 CDS Spea_2434 NC_009901.1 2974579 2974917 R KEGG: vpa:VPA0120 hypothetical protein; hypothetical protein complement(2974579..2974917) Shewanella pealeana ATCC 700345 5662827 YP_001502290.1 CDS Spea_2435 NC_009901.1 2975127 2976212 R PFAM: peptidase T2 asparaginase 2; KEGG: slo:Shew_2171 peptidase T2, asparaginase 2; asparaginase complement(2975127..2976212) Shewanella pealeana ATCC 700345 5662828 YP_001502291.1 CDS Spea_2436 NC_009901.1 2976381 2978207 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: she:Shewmr4_1836 surface antigen (D15); surface antigen (D15) 2976381..2978207 Shewanella pealeana ATCC 700345 5662829 YP_001502292.1 CDS Spea_2437 NC_009901.1 2978204 2982265 D PFAM: protein of unknown function DUF490; KEGG: slo:Shew_2173 protein of unknown function DUF490; hypothetical protein 2978204..2982265 Shewanella pealeana ATCC 700345 5662830 YP_001502293.1 CDS Spea_2438 NC_009901.1 2982409 2983128 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(2982409..2983128) Shewanella pealeana ATCC 700345 5662831 YP_001502294.1 CDS nhaB NC_009901.1 2983416 2985002 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2983416..2985002 Shewanella pealeana ATCC 700345 5662832 YP_001502295.1 CDS Spea_2440 NC_009901.1 2985081 2985599 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 2985081..2985599 Shewanella pealeana ATCC 700345 5662833 YP_001502296.1 CDS Spea_2441 NC_009901.1 2985663 2986103 R PFAM: protein of unknown function UPF0153; KEGG: sbm:Shew185_1898 protein of unknown function UPF0153; hypothetical protein complement(2985663..2986103) Shewanella pealeana ATCC 700345 5662834 YP_001502297.1 CDS Spea_2442 NC_009901.1 2986307 2987302 R TIGRFAM: lytic murein transglycosylase; KEGG: sbl:Sbal_1870 lytic murein transglycosylase; lytic murein transglycosylase complement(2986307..2987302) Shewanella pealeana ATCC 700345 5662835 YP_001502298.1 CDS Spea_2443 NC_009901.1 2987344 2987625 R PFAM: protein of unknown function DUF709; KEGG: slo:Shew_2183 protein of unknown function DUF709; hypothetical protein complement(2987344..2987625) Shewanella pealeana ATCC 700345 5662836 YP_001502299.1 CDS minC NC_009901.1 2987700 2988410 D blocks the formation of polar Z-ring septums; septum formation inhibitor 2987700..2988410 Shewanella pealeana ATCC 700345 5662837 YP_001502300.1 CDS Spea_2445 NC_009901.1 2988442 2989251 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_2185 septum site-determining protein MinD; septum site-determining protein MinD 2988442..2989251 Shewanella pealeana ATCC 700345 5662838 YP_001502301.1 CDS minE NC_009901.1 2989255 2989515 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2989255..2989515 Shewanella pealeana ATCC 700345 5662839 YP_001502302.1 CDS Spea_2447 NC_009901.1 2989575 2990684 R TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sdn:Sden_1626 ribonuclease D; ribonuclease D complement(2989575..2990684) Shewanella pealeana ATCC 700345 5662840 YP_001502303.1 CDS Spea_2448 NC_009901.1 2990779 2992446 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2990779..2992446) Shewanella pealeana ATCC 700345 5662841 YP_001502304.1 CDS Spea_2449 NC_009901.1 2992633 2993508 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2992633..2993508) Shewanella pealeana ATCC 700345 5662842 YP_001502305.1 CDS Spea_2450 NC_009901.1 2993517 2994347 R KEGG: slo:Shew_2190 hypothetical protein; hypothetical protein complement(2993517..2994347) Shewanella pealeana ATCC 700345 5662843 YP_001502306.1 CDS Spea_2451 NC_009901.1 2994423 2995136 R KEGG: shw:Sputw3181_2267 hypothetical protein; hypothetical protein complement(2994423..2995136) Shewanella pealeana ATCC 700345 5662844 YP_001502307.1 CDS Spea_2452 NC_009901.1 2995129 2995437 R KEGG: shw:Sputw3181_2268 hypothetical protein; hypothetical protein complement(2995129..2995437) Shewanella pealeana ATCC 700345 5662845 YP_001502308.1 CDS Spea_2453 NC_009901.1 2995486 2996202 R PFAM: peptidase M22 glycoprotease; KEGG: sbm:Shew185_1886 peptidase M22 glycoprotease; peptidase M22 glycoprotease complement(2995486..2996202) Shewanella pealeana ATCC 700345 5662846 YP_001502309.1 CDS Spea_2454 NC_009901.1 2996567 2996992 D hypothetical protein 2996567..2996992 Shewanella pealeana ATCC 700345 5662847 YP_001502310.1 CDS Spea_2455 NC_009901.1 2996985 2998910 R SMART: helicase c2; DEAD-like helicases; KEGG: slo:Shew_2196 helicase C2; helicase c2 complement(2996985..2998910) Shewanella pealeana ATCC 700345 5662848 YP_001502311.1 CDS hisG NC_009901.1 2999471 3000370 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2999471..3000370 Shewanella pealeana ATCC 700345 5662849 YP_001502312.1 CDS hisD NC_009901.1 3000375 3001703 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3000375..3001703 Shewanella pealeana ATCC 700345 5662850 YP_001502313.1 CDS Spea_2458 NC_009901.1 3001700 3002755 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3001700..3002755 Shewanella pealeana ATCC 700345 5662851 YP_001502314.1 CDS Spea_2459 NC_009901.1 3002843 3003937 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 3002843..3003937 Shewanella pealeana ATCC 700345 5662852 YP_001502315.1 CDS hisH NC_009901.1 3003934 3004677 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3003934..3004677 Shewanella pealeana ATCC 700345 5662853 YP_001502316.1 CDS Spea_2461 NC_009901.1 3004674 3005411 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3004674..3005411 Shewanella pealeana ATCC 700345 5662854 YP_001502317.1 CDS Spea_2462 NC_009901.1 3005393 3006166 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3005393..3006166 Shewanella pealeana ATCC 700345 5662855 YP_001502318.1 CDS Spea_2463 NC_009901.1 3006202 3006840 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 3006202..3006840 Shewanella pealeana ATCC 700345 5662856 YP_001502319.1 CDS Spea_2464 NC_009901.1 3007082 3008185 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 3007082..3008185 Shewanella pealeana ATCC 700345 5662857 YP_001502320.1 CDS Spea_2465 NC_009901.1 3008289 3008687 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 3008289..3008687 Shewanella pealeana ATCC 700345 5662858 YP_001502321.1 CDS Spea_2466 NC_009901.1 3008771 3009523 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 3008771..3009523 Shewanella pealeana ATCC 700345 5662859 YP_001502322.1 CDS Spea_2467 NC_009901.1 3009622 3010560 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(3009622..3010560) Shewanella pealeana ATCC 700345 5662860 YP_001502323.1 CDS ihfA NC_009901.1 3010638 3010934 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(3010638..3010934) Shewanella pealeana ATCC 700345 5662861 YP_001502324.1 CDS pheT NC_009901.1 3010939 3013326 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3010939..3013326) Shewanella pealeana ATCC 700345 5662862 YP_001502325.1 CDS pheS NC_009901.1 3013343 3014329 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3013343..3014329) Shewanella pealeana ATCC 700345 5662863 YP_001502326.1 CDS Spea_2471 NC_009901.1 3014768 3016267 D PFAM: chemotaxis sensory transducer; KEGG: slo:Shew_2217 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3014768..3016267 Shewanella pealeana ATCC 700345 5662864 YP_001502327.1 CDS Spea_2472 NC_009901.1 3016457 3019057 D KEGG: sbm:Shew185_1768 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 3016457..3019057 Shewanella pealeana ATCC 700345 5662865 YP_001502328.1 CDS Spea_2473 NC_009901.1 3019143 3020018 R PFAM: protein of unknown function DUF785; KEGG: slo:Shew_2219 protein of unknown function DUF785; hypothetical protein complement(3019143..3020018) Shewanella pealeana ATCC 700345 5662866 YP_001502329.1 CDS Spea_2474 NC_009901.1 3020193 3020489 R KEGG: slo:Shew_2221 hypothetical protein; hypothetical protein complement(3020193..3020489) Shewanella pealeana ATCC 700345 5662867 YP_001502330.1 CDS Spea_2475 NC_009901.1 3020589 3020942 R KEGG: slo:Shew_2222 hypothetical protein; hypothetical protein complement(3020589..3020942) Shewanella pealeana ATCC 700345 5662868 YP_001502331.1 CDS Spea_2476 NC_009901.1 3021310 3021885 R PFAM: YceI family protein; KEGG: son:SO_2893 hypothetical protein; hypothetical protein complement(3021310..3021885) Shewanella pealeana ATCC 700345 5662869 YP_001502332.1 CDS Spea_2477 NC_009901.1 3022089 3022727 R KEGG: slo:Shew_1622 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase complement(3022089..3022727) Shewanella pealeana ATCC 700345 5662870 YP_001502333.1 CDS Spea_2478 NC_009901.1 3022869 3023798 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3022869..3023798) Shewanella pealeana ATCC 700345 5662871 YP_001502334.1 CDS Spea_2479 NC_009901.1 3023823 3024743 R PFAM: S-adenosylmethionine decarboxylase; KEGG: saz:Sama_1962 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase complement(3023823..3024743) Shewanella pealeana ATCC 700345 5662872 YP_001502335.1 CDS Spea_2480 NC_009901.1 3025010 3026923 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3025010..3026923) Shewanella pealeana ATCC 700345 5662873 YP_001502336.1 CDS Spea_2481 NC_009901.1 3027546 3028379 D KEGG: slo:Shew_1618 hypothetical protein; hypothetical protein 3027546..3028379 Shewanella pealeana ATCC 700345 5662874 YP_001502337.1 CDS Spea_2482 NC_009901.1 3028508 3029158 D PFAM: protein of unknown function DUF480; KEGG: she:Shewmr4_1554 protein of unknown function DUF480; hypothetical protein 3028508..3029158 Shewanella pealeana ATCC 700345 5662875 YP_001502338.1 CDS Spea_2483 NC_009901.1 3029284 3030093 D KEGG: shn:Shewana3_1621 hypothetical protein; hypothetical protein 3029284..3030093 Shewanella pealeana ATCC 700345 5662876 YP_001502339.1 CDS Spea_2484 NC_009901.1 3030090 3030995 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_2383 ABC transporter related; ABC transporter-like protein 3030090..3030995 Shewanella pealeana ATCC 700345 5662877 YP_001502340.1 CDS Spea_2485 NC_009901.1 3031397 3031603 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: slo:Shew_1614 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(3031397..3031603) Shewanella pealeana ATCC 700345 5662878 YP_001502341.1 CDS rrmA NC_009901.1 3031906 3032712 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(3031906..3032712) Shewanella pealeana ATCC 700345 5662879 YP_001502342.1 CDS sbcB NC_009901.1 3033204 3034616 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 3033204..3034616 Shewanella pealeana ATCC 700345 5662880 YP_001502343.1 CDS Spea_2488 NC_009901.1 3034712 3035602 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 3034712..3035602 Shewanella pealeana ATCC 700345 5662881 YP_001502344.1 CDS Spea_2489 NC_009901.1 3035681 3036556 R PFAM: oxidoreductase domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: slo:Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase complement(3035681..3036556) Shewanella pealeana ATCC 700345 5662882 YP_001502345.1 CDS Spea_2490 NC_009901.1 3036694 3037194 R PFAM: thioesterase superfamily protein; KEGG: slo:Shew_1607 thioesterase superfamily protein; thioesterase superfamily protein complement(3036694..3037194) Shewanella pealeana ATCC 700345 5662883 YP_001502346.1 CDS Spea_2491 NC_009901.1 3037260 3037628 R KEGG: shm:Shewmr7_2463 hypothetical protein; hypothetical protein complement(3037260..3037628) Shewanella pealeana ATCC 700345 5662884 YP_001502347.1 CDS Spea_2492 NC_009901.1 3037867 3039105 R PFAM: Beta-ketoacyl synthase; KEGG: shm:Shewmr7_2464 beta-ketoacyl synthase; beta-ketoacyl synthase complement(3037867..3039105) Shewanella pealeana ATCC 700345 5662885 YP_001502348.1 CDS acpP NC_009901.1 3039360 3039593 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3039360..3039593) Shewanella pealeana ATCC 700345 5662886 YP_001502349.1 CDS Spea_2494 NC_009901.1 3039750 3040496 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: son:SO_2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(3039750..3040496) Shewanella pealeana ATCC 700345 5662887 YP_001502350.1 CDS Spea_2495 NC_009901.1 3040506 3041432 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: sbm:Shew185_1715 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(3040506..3041432) Shewanella pealeana ATCC 700345 5662888 YP_001502351.1 CDS Spea_2496 NC_009901.1 3041510 3042469 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3041510..3042469) Shewanella pealeana ATCC 700345 5662889 YP_001502352.1 CDS Spea_2497 NC_009901.1 3042480 3043508 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(3042480..3043508) Shewanella pealeana ATCC 700345 5662890 YP_001502353.1 CDS rpmF NC_009901.1 3043524 3043694 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3043524..3043694) Shewanella pealeana ATCC 700345 5662891 YP_001502354.1 CDS Spea_2499 NC_009901.1 3043712 3044236 R PFAM: protein of unknown function DUF177; KEGG: son:SO_2781 hypothetical protein; hypothetical protein complement(3043712..3044236) Shewanella pealeana ATCC 700345 5662892 YP_001502355.1 CDS Spea_2500 NC_009901.1 3045122 3045703 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO_2782 maf protein, putative; maf protein 3045122..3045703 Shewanella pealeana ATCC 700345 5662893 YP_001502356.1 CDS Spea_2501 NC_009901.1 3045885 3047243 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: slo:Shew_1596 diguanylate cyclase with PAS/PAC sensor; PAS/PAC sensor-containing diguanylate cyclase 3045885..3047243 Shewanella pealeana ATCC 700345 5662894 YP_001502357.1 CDS Spea_2502 NC_009901.1 3047445 3048047 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: slo:Shew_1595 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(3047445..3048047) Shewanella pealeana ATCC 700345 5662895 YP_001502358.1 CDS Spea_2503 NC_009901.1 3048089 3049048 R KEGG: slo:Shew_1594 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(3048089..3049048) Shewanella pealeana ATCC 700345 5662896 YP_001502359.1 CDS Spea_2504 NC_009901.1 3049646 3052900 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: slo:Shew_1593 ribonuclease, Rne/Rng family; ribonuclease 3049646..3052900 Shewanella pealeana ATCC 700345 5662897 YP_001502360.1 CDS Spea_2505 NC_009901.1 3053031 3054590 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_1592 sulphate transporter; sulfate transporter 3053031..3054590 Shewanella pealeana ATCC 700345 5662898 YP_001502361.1 CDS Spea_2506 NC_009901.1 3054666 3055568 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(3054666..3055568) Shewanella pealeana ATCC 700345 5662899 YP_001502362.1 CDS Spea_2507 NC_009901.1 3056014 3056853 D PFAM: 2OG-Fe(II) oxygenase; KEGG: slo:Shew_1590 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 3056014..3056853 Shewanella pealeana ATCC 700345 5662900 YP_001502363.1 CDS rbgA NC_009901.1 3056971 3057909 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 3056971..3057909 Shewanella pealeana ATCC 700345 5662901 YP_001502364.1 CDS Spea_2509 NC_009901.1 3058044 3058532 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: saz:Sama_1994 protein tyrosine phosphatase; protein tyrosine phosphatase complement(3058044..3058532) Shewanella pealeana ATCC 700345 5662902 YP_001502365.1 CDS Spea_2510 NC_009901.1 3058779 3059435 D PFAM: nitroreductase; KEGG: sdn:Sden_2794 nitroreductase; nitroreductase 3058779..3059435 Shewanella pealeana ATCC 700345 5662903 YP_001502366.1 CDS Spea_2511 NC_009901.1 3059563 3060438 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(3059563..3060438) Shewanella pealeana ATCC 700345 5662904 YP_001502367.1 CDS Spea_2512 NC_009901.1 3060701 3061072 D PFAM: diacylglycerol kinase; KEGG: shn:Shewana3_2402 diacylglycerol kinase; diacylglycerol kinase 3060701..3061072 Shewanella pealeana ATCC 700345 5662905 YP_001502368.1 CDS Spea_2513 NC_009901.1 3061478 3062350 D KEGG: slo:Shew_1585 hypothetical protein; hypothetical protein 3061478..3062350 Shewanella pealeana ATCC 700345 5662906 YP_001502369.1 CDS Spea_2514 NC_009901.1 3063013 3064038 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbm:Shew185_1831 diguanylate cyclase; diguanylate cyclase 3063013..3064038 Shewanella pealeana ATCC 700345 5662907 YP_001502370.1 CDS Spea_2515 NC_009901.1 3064166 3064855 R TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein complement(3064166..3064855) Shewanella pealeana ATCC 700345 5662908 YP_001502371.1 CDS Spea_2516 NC_009901.1 3064855 3067224 R KEGG: shm:Shewmr7_2277 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: von Willebrand factor type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; cell wall anchor domain-containing protein complement(3064855..3067224) Shewanella pealeana ATCC 700345 5662909 YP_001502372.1 CDS Spea_2517 NC_009901.1 3067306 3068055 R PFAM: OmpA/MotB domain protein; KEGG: sfr:Sfri_1624 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3067306..3068055) Shewanella pealeana ATCC 700345 5662910 YP_001502373.1 CDS Spea_2518 NC_009901.1 3068300 3068992 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_1791 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3068300..3068992 Shewanella pealeana ATCC 700345 5662911 YP_001502374.1 CDS Spea_2519 NC_009901.1 3069089 3071275 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1790 integral membrane sensor signal transduction histidine kinase; histidine kinase 3069089..3071275 Shewanella pealeana ATCC 700345 5662912 YP_001502375.1 CDS Spea_2520 NC_009901.1 3071448 3072668 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3071448..3072668 Shewanella pealeana ATCC 700345 5662913 YP_001502376.1 CDS Spea_2521 NC_009901.1 3072832 3073413 D KEGG: vfi:VF1617 hypothetical protein; hypothetical protein 3072832..3073413 Shewanella pealeana ATCC 700345 5662914 YP_001502377.1 CDS Spea_2522 NC_009901.1 3073523 3074017 R PFAM: CreA family protein; KEGG: shn:Shewana3_2415 CreA family protein; CreA family protein complement(3073523..3074017) Shewanella pealeana ATCC 700345 5662915 YP_001502378.1 CDS Spea_2523 NC_009901.1 3074106 3075473 R KEGG: slo:Shew_1787 hypothetical protein; putative chaperone complement(3074106..3075473) Shewanella pealeana ATCC 700345 5662916 YP_001502379.1 CDS Spea_2524 NC_009901.1 3075633 3076616 R PFAM: Rhodanese domain protein; KEGG: sdn:Sden_2100 rhodanese-like protein; rhodanese domain-containing protein complement(3075633..3076616) Shewanella pealeana ATCC 700345 5662917 YP_001502380.1 CDS Spea_2525 NC_009901.1 3076901 3077626 D PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_1780 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3076901..3077626 Shewanella pealeana ATCC 700345 5662918 YP_001502381.1 CDS Spea_2526 NC_009901.1 3077683 3078288 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shn:Shewana3_2265 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3077683..3078288) Shewanella pealeana ATCC 700345 5662919 YP_001502382.1 CDS Spea_2527 NC_009901.1 3078453 3079820 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: sbl:Sbal_2383 putative transcriptional regulator, GntR family; transcriptional regulator 3078453..3079820 Shewanella pealeana ATCC 700345 5662920 YP_001502383.1 CDS Spea_2528 NC_009901.1 3079920 3080396 R PFAM: 17 kDa surface antigen; KEGG: slo:Shew_1570 17 kDa surface antigen; 17 kDa surface antigen complement(3079920..3080396) Shewanella pealeana ATCC 700345 5662921 YP_001502384.1 CDS aat NC_009901.1 3080451 3081161 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 3080451..3081161 Shewanella pealeana ATCC 700345 5662922 YP_001502385.1 CDS Spea_2530 NC_009901.1 3081151 3081876 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 3081151..3081876 Shewanella pealeana ATCC 700345 5662923 YP_001502386.1 CDS infA NC_009901.1 3081991 3082209 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3081991..3082209 Shewanella pealeana ATCC 700345 5662924 YP_001502387.1 CDS Spea_2532 NC_009901.1 3082342 3084600 R KEGG: slo:Shew_1566 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(3082342..3084600) Shewanella pealeana ATCC 700345 5662925 YP_001502388.1 CDS clpS NC_009901.1 3084639 3084947 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(3084639..3084947) Shewanella pealeana ATCC 700345 5662926 YP_001502389.1 CDS Spea_2534 NC_009901.1 3085187 3085393 D KEGG: sbm:Shew185_2467 putative cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3085187..3085393 Shewanella pealeana ATCC 700345 5662927 YP_001502390.1 CDS Spea_2535 NC_009901.1 3085561 3087783 R KEGG: sfr:Sfri_2257 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase complement(3085561..3087783) Shewanella pealeana ATCC 700345 5662928 YP_001502391.1 CDS Spea_2536 NC_009901.1 3088087 3088821 D PFAM: pseudouridine synthase; KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridine synthase 3088087..3088821 Shewanella pealeana ATCC 700345 5662929 YP_001502392.1 CDS Spea_2537 NC_009901.1 3088832 3089284 D PFAM: NUDIX hydrolase; KEGG: sfr:Sfri_2259 NUDIX hydrolase; NUDIX hydrolase 3088832..3089284 Shewanella pealeana ATCC 700345 5662930 YP_001502393.1 CDS mnmA NC_009901.1 3089471 3090667 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 3089471..3090667 Shewanella pealeana ATCC 700345 5662931 YP_001502394.1 CDS Spea_2539 NC_009901.1 3090671 3091288 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 3090671..3091288 Shewanella pealeana ATCC 700345 5662932 YP_001502395.1 CDS Spea_2540 NC_009901.1 3091320 3092690 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 3091320..3092690 Shewanella pealeana ATCC 700345 5662933 YP_001502396.1 CDS Spea_2541 NC_009901.1 3092865 3093995 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: spc:Sputcn32_2236 cupin 4 family protein; cupin 4 family protein 3092865..3093995 Shewanella pealeana ATCC 700345 5662934 YP_001502397.1 CDS Spea_2542 NC_009901.1 3094086 3094511 R KEGG: sfr:Sfri_2264 hypothetical protein; hypothetical protein complement(3094086..3094511) Shewanella pealeana ATCC 700345 5662935 YP_001502398.1 CDS Spea_2543 NC_009901.1 3094774 3095805 D PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: slo:Shew_1555 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 3094774..3095805 Shewanella pealeana ATCC 700345 5662936 YP_001502399.1 CDS Spea_2544 NC_009901.1 3095982 3096326 D KEGG: shw:Sputw3181_1770 hypothetical protein; hypothetical protein 3095982..3096326 Shewanella pealeana ATCC 700345 5662937 YP_001502400.1 CDS Spea_2545 NC_009901.1 3096391 3096804 R KEGG: slo:Shew_1553 hypothetical protein; hypothetical protein complement(3096391..3096804) Shewanella pealeana ATCC 700345 5662938 YP_001502401.1 CDS Spea_2546 NC_009901.1 3096901 3097314 R PFAM: regulatory protein MarR; KEGG: shm:Shewmr7_1670 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3096901..3097314) Shewanella pealeana ATCC 700345 5662939 YP_001502402.1 CDS Spea_2547 NC_009901.1 3097471 3097914 R KEGG: son:SO_2642 hypothetical protein; hypothetical protein complement(3097471..3097914) Shewanella pealeana ATCC 700345 5662940 YP_001502403.1 CDS Spea_2548 NC_009901.1 3098005 3101055 R PFAM: FAD linked oxidase domain protein; KEGG: shw:Sputw3181_1766 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(3098005..3101055) Shewanella pealeana ATCC 700345 5662941 YP_001502404.1 CDS Spea_2549 NC_009901.1 3101185 3103554 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(3101185..3103554) Shewanella pealeana ATCC 700345 5662942 YP_001502405.1 CDS Spea_2550 NC_009901.1 3103681 3104493 D PFAM: protein of unknown function DUF299; KEGG: slo:Shew_1548 protein of unknown function DUF299; hypothetical protein 3103681..3104493 Shewanella pealeana ATCC 700345 5662943 YP_001502406.1 CDS Spea_2551 NC_009901.1 3104684 3105751 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 3104684..3105751 Shewanella pealeana ATCC 700345 5662944 YP_001502407.1 CDS Spea_2552 NC_009901.1 3106152 3106598 R PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_0944 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3106152..3106598) Shewanella pealeana ATCC 700345 5662945 YP_001502408.1 CDS Spea_2553 NC_009901.1 3106930 3107358 D PFAM: thioesterase superfamily protein; KEGG: saz:Sama_2075 thioesterase superfamily; thioesterase superfamily protein 3106930..3107358 Shewanella pealeana ATCC 700345 5662946 YP_001502409.1 CDS Spea_2554 NC_009901.1 3107611 3108270 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: slo:Shew_1545 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3107611..3108270 Shewanella pealeana ATCC 700345 5662947 YP_001502410.1 CDS Spea_2555 NC_009901.1 3108354 3109643 R PFAM: FAD dependent oxidoreductase; KEGG: slo:Shew_1537 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3108354..3109643) Shewanella pealeana ATCC 700345 5662948 YP_001502411.1 CDS Spea_2556 NC_009901.1 3109992 3110324 D KEGG: sfr:Sfri_1438 hypothetical protein; hypothetical protein 3109992..3110324 Shewanella pealeana ATCC 700345 5662949 YP_001502412.1 CDS Spea_2557 NC_009901.1 3110390 3113818 R PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase; histidine kinase complement(3110390..3113818) Shewanella pealeana ATCC 700345 5662950 YP_001502413.1 CDS Spea_2558 NC_009901.1 3113995 3115947 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3113995..3115947 Shewanella pealeana ATCC 700345 5662951 YP_001502414.1 CDS Spea_2559 NC_009901.1 3116131 3117873 D PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shm:Shewmr7_2435 type III restriction enzyme, res subunit; type III restriction protein res subunit 3116131..3117873 Shewanella pealeana ATCC 700345 5662952 YP_001502415.1 CDS grxA NC_009901.1 3117970 3118236 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 3117970..3118236 Shewanella pealeana ATCC 700345 5662953 YP_001502416.1 CDS Spea_2561 NC_009901.1 3118298 3119458 R PFAM: porin; KEGG: slo:Shew_1530 porin; porin complement(3118298..3119458) Shewanella pealeana ATCC 700345 5662954 YP_001502417.1 CDS Spea_2562 NC_009901.1 3122035 3122760 R TIGRFAM: Tol-Pal system YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: shw:Sputw3181_2413 tetratricopeptide domain protein; Tol-Pal system protein YbgF complement(3122035..3122760) Shewanella pealeana ATCC 700345 5664791 YP_001502418.1 CDS Spea_2563 NC_009901.1 3122785 3123324 R TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: slo:Shew_1528 OmpA domain protein; peptidoglycan-associated lipoprotein complement(3122785..3123324) Shewanella pealeana ATCC 700345 5662956 YP_001502419.1 CDS tolB NC_009901.1 3123349 3124671 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(3123349..3124671) Shewanella pealeana ATCC 700345 5662957 YP_001502420.1 CDS Spea_2565 NC_009901.1 3124681 3125616 R TIGRFAM: Tol-Pal system TolA; PFAM: TolA family protein; KEGG: slo:Shew_1526 TolA family protein; Tol-Pal system TolA complement(3124681..3125616) Shewanella pealeana ATCC 700345 5662958 YP_001502421.1 CDS Spea_2566 NC_009901.1 3125617 3126054 R TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_1525 biopolymer transport protein ExbD/TolR; biopolymer transport TolR complement(3125617..3126054) Shewanella pealeana ATCC 700345 5662959 YP_001502422.1 CDS Spea_2567 NC_009901.1 3126054 3126743 R TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: slo:Shew_1524 MotA/TolQ/ExbB proton channel; Tol-Pal system protein TolQ complement(3126054..3126743) Shewanella pealeana ATCC 700345 5662960 YP_001502423.1 CDS Spea_2568 NC_009901.1 3126733 3127206 R TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shn:Shewana3_2535 4-hydroxybenzoyl-CoA thioesterase; Pol-Pal system-associated acyl-CoA thioesterase complement(3126733..3127206) Shewanella pealeana ATCC 700345 5662961 YP_001502424.1 CDS Spea_2569 NC_009901.1 3127371 3129527 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: slo:Shew_1522 prolyl oligopeptidase; prolyl oligopeptidase complement(3127371..3129527) Shewanella pealeana ATCC 700345 5662962 YP_001502425.1 CDS Spea_2570 NC_009901.1 3130162 3131031 R PFAM: OmpA/MotB domain protein; KEGG: sbm:Shew185_1736 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3130162..3131031) Shewanella pealeana ATCC 700345 5662963 YP_001502426.1 CDS Spea_2571 NC_009901.1 3131172 3131870 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 3131172..3131870 Shewanella pealeana ATCC 700345 5662964 YP_001502427.1 CDS Spea_2572 NC_009901.1 3131978 3132361 D KEGG: sfr:Sfri_3563 transposase; transposase 3131978..3132361 Shewanella pealeana ATCC 700345 5662965 YP_001502428.1 CDS Spea_2573 NC_009901.1 3132478 3133206 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit 3132478..3133206 Shewanella pealeana ATCC 700345 5662966 YP_001502429.1 CDS Spea_2574 NC_009901.1 3133262 3133867 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: slo:Shew_1516 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase complement(3133262..3133867) Shewanella pealeana ATCC 700345 5662967 YP_001502430.1 CDS Spea_2575 NC_009901.1 3134184 3135503 D PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: slo:Shew_1515 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3134184..3135503 Shewanella pealeana ATCC 700345 5662968 YP_001502431.1 CDS upp NC_009901.1 3135588 3136214 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3135588..3136214) Shewanella pealeana ATCC 700345 5662969 YP_001502432.1 CDS Spea_2577 NC_009901.1 3136435 3137475 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3136435..3137475 Shewanella pealeana ATCC 700345 5662970 YP_001502433.1 CDS purN NC_009901.1 3137475 3138119 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 3137475..3138119 Shewanella pealeana ATCC 700345 5662971 YP_001502434.1 CDS Spea_2579 NC_009901.1 3138527 3140065 R PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vha:VIBHAR_02425 hypothetical protein; hypothetical protein complement(3138527..3140065) Shewanella pealeana ATCC 700345 5662972 YP_001502435.1 CDS Spea_2580 NC_009901.1 3140202 3142163 R KEGG: ppr:PBPRB0205 hypothetical FOG: GGDEF domain; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase complement(3140202..3142163) Shewanella pealeana ATCC 700345 5662973 YP_001502436.1 CDS Spea_2581 NC_009901.1 3142705 3143451 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saz:Sama_2099 NagD protein; UMP phosphatase 3142705..3143451 Shewanella pealeana ATCC 700345 5662974 YP_001502437.1 CDS Spea_2582 NC_009901.1 3143691 3145349 D PFAM: peptidase M28; KEGG: slo:Shew_1510 peptidase M28; peptidase M28 3143691..3145349 Shewanella pealeana ATCC 700345 5662975 YP_001502438.1 CDS asnB NC_009901.1 3146167 3147831 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 3146167..3147831 Shewanella pealeana ATCC 700345 5662976 YP_001502439.1 CDS Spea_2584 NC_009901.1 3147915 3148439 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: slo:Shew_2412 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(3147915..3148439) Shewanella pealeana ATCC 700345 5662977 YP_001502440.1 CDS Spea_2585 NC_009901.1 3148503 3148772 R PFAM: YfcL protein; KEGG: shm:Shewmr7_1484 hypothetical protein; hypothetical protein complement(3148503..3148772) Shewanella pealeana ATCC 700345 5662978 YP_001502441.1 CDS Spea_2586 NC_009901.1 3148901 3150022 R PFAM: ATP-NAD/AcoX kinase; KEGG: sbm:Shew185_2767 ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase complement(3148901..3150022) Shewanella pealeana ATCC 700345 5662979 YP_001502442.1 CDS Spea_2587 NC_009901.1 3150053 3151216 R PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbm:Shew185_2768 major facilitator superfamily MFS_1; major facilitator transporter complement(3150053..3151216) Shewanella pealeana ATCC 700345 5662980 YP_001502443.1 CDS Spea_2588 NC_009901.1 3151216 3152310 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3151216..3152310) Shewanella pealeana ATCC 700345 5662981 YP_001502444.1 CDS Spea_2589 NC_009901.1 3152437 3153381 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(3152437..3153381) Shewanella pealeana ATCC 700345 5662982 YP_001502445.1 CDS Spea_2590 NC_009901.1 3153461 3153991 D PFAM: Smr protein/MutS2; KEGG: slo:Shew_2418 Smr protein/MutS2; hypothetical protein 3153461..3153991 Shewanella pealeana ATCC 700345 5662983 YP_001502446.1 CDS Spea_2591 NC_009901.1 3154158 3154628 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: slo:Shew_2419 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA complement(3154158..3154628) Shewanella pealeana ATCC 700345 5662984 YP_001502447.1 CDS Spea_2592 NC_009901.1 3154976 3157765 D PFAM: peptidase M16 domain protein; KEGG: slo:Shew_2420 peptidase M16 domain protein; peptidase M16 domain-containing protein 3154976..3157765 Shewanella pealeana ATCC 700345 5662985 YP_001502448.1 CDS Spea_2593 NC_009901.1 3158031 3162341 D KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3158031..3162341 Shewanella pealeana ATCC 700345 5662986 YP_001502449.1 CDS Spea_2594 NC_009901.1 3162440 3162766 D KEGG: saz:Sama_2165 hypothetical protein; hypothetical protein 3162440..3162766 Shewanella pealeana ATCC 700345 5662987 YP_001502450.1 CDS Spea_2595 NC_009901.1 3162781 3162897 D KEGG: sbm:Shew185_2776 hypothetical protein; hypothetical protein 3162781..3162897 Shewanella pealeana ATCC 700345 5662988 YP_001502451.1 CDS Spea_2596 NC_009901.1 3162925 3163041 D KEGG: sbm:Shew185_2776 hypothetical protein; hypothetical protein 3162925..3163041 Shewanella pealeana ATCC 700345 5662989 YP_001502452.1 CDS Spea_2597 NC_009901.1 3163132 3163329 R KEGG: slo:Shew_2424 hypothetical protein; hypothetical protein complement(3163132..3163329) Shewanella pealeana ATCC 700345 5662990 YP_001502453.1 CDS fadJ NC_009901.1 3163542 3165662 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(3163542..3165662) Shewanella pealeana ATCC 700345 5662991 YP_001502454.1 CDS fadI NC_009901.1 3165668 3166978 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(3165668..3166978) Shewanella pealeana ATCC 700345 5662992 YP_001502455.1 CDS Spea_2600 NC_009901.1 3167379 3168335 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sbm:Shew185_2782 ATPase associated with various cellular activities AAA_3; ATPase 3167379..3168335 Shewanella pealeana ATCC 700345 5662993 YP_001502456.1 CDS Spea_2601 NC_009901.1 3168335 3169264 D PFAM: protein of unknown function DUF58; KEGG: slo:Shew_2428 protein of unknown function DUF58; hypothetical protein 3168335..3169264 Shewanella pealeana ATCC 700345 5662994 YP_001502457.1 CDS Spea_2602 NC_009901.1 3169265 3169777 D KEGG: slo:Shew_2429 hypothetical protein; hypothetical protein 3169265..3169777 Shewanella pealeana ATCC 700345 5662995 YP_001502458.1 CDS Spea_2603 NC_009901.1 3169771 3170781 D PFAM: von Willebrand factor type A; KEGG: shm:Shewmr7_1468 von Willebrand factor, type A; von Willebrand factor type A 3169771..3170781 Shewanella pealeana ATCC 700345 5662996 YP_001502459.1 CDS Spea_2604 NC_009901.1 3170784 3172745 D PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: spc:Sputcn32_2465 TPR repeat-containing protein; hypothetical protein 3170784..3172745 Shewanella pealeana ATCC 700345 5662997 YP_001502460.1 CDS Spea_2605 NC_009901.1 3172739 3174373 D KEGG: sbm:Shew185_2787 hypothetical protein; hypothetical protein 3172739..3174373 Shewanella pealeana ATCC 700345 5662998 YP_001502461.1 CDS Spea_2606 NC_009901.1 3174628 3175191 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3174628..3175191 Shewanella pealeana ATCC 700345 5662999 YP_001502462.1 CDS Spea_2607 NC_009901.1 3175184 3175888 D KEGG: slo:Shew_2434 hypothetical protein; hypothetical protein 3175184..3175888 Shewanella pealeana ATCC 700345 5663000 YP_001502463.1 CDS Spea_2608 NC_009901.1 3176029 3177480 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: slo:Shew_2435 sodium/proline symporter; sodium/proline symporter 3176029..3177480 Shewanella pealeana ATCC 700345 5663001 YP_001502464.1 CDS Spea_2609 NC_009901.1 3177827 3179146 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: slo:Shew_2436 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3177827..3179146 Shewanella pealeana ATCC 700345 5663002 YP_001502465.1 CDS Spea_2610 NC_009901.1 3179409 3180497 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbl:Sbal_2774 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3179409..3180497 Shewanella pealeana ATCC 700345 5663003 YP_001502466.1 CDS Spea_2611 NC_009901.1 3180533 3183817 D PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1458 acriflavin resistance protein; acriflavin resistance protein 3180533..3183817 Shewanella pealeana ATCC 700345 5663004 YP_001502467.1 CDS Spea_2612 NC_009901.1 3183878 3184096 D KEGG: sbm:Shew185_2796 hypothetical protein; hypothetical protein 3183878..3184096 Shewanella pealeana ATCC 700345 5663005 YP_001502468.1 CDS Spea_2613 NC_009901.1 3184121 3184516 D PFAM: Rhodanese domain protein; KEGG: shn:Shewana3_1444 rhodanese domain protein; rhodanese domain-containing protein 3184121..3184516 Shewanella pealeana ATCC 700345 5663006 YP_001502469.1 CDS Spea_2614 NC_009901.1 3184657 3184974 D KEGG: slo:Shew_2444 hypothetical protein; hypothetical protein 3184657..3184974 Shewanella pealeana ATCC 700345 5663007 YP_001502470.1 CDS Spea_2615 NC_009901.1 3185044 3185856 R KEGG: sfr:Sfri_2437 hypothetical protein; hypothetical protein complement(3185044..3185856) Shewanella pealeana ATCC 700345 5663008 YP_001502471.1 CDS ribA NC_009901.1 3185955 3186584 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(3185955..3186584) Shewanella pealeana ATCC 700345 5663009 YP_001502472.1 CDS Spea_2617 NC_009901.1 3186800 3187156 R KEGG: sdn:Sden_1446 hypothetical protein; hypothetical protein complement(3186800..3187156) Shewanella pealeana ATCC 700345 5663010 YP_001502473.1 CDS Spea_2618 NC_009901.1 3187312 3187776 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: slo:Shew_2448 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(3187312..3187776) Shewanella pealeana ATCC 700345 5663011 YP_001502474.1 CDS Spea_2619 NC_009901.1 3187913 3190030 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3187913..3190030) Shewanella pealeana ATCC 700345 5663012 YP_001502475.1 CDS Spea_2620 NC_009901.1 3190435 3191115 R KEGG: sbm:Shew185_1649 hypothetical protein; hypothetical protein complement(3190435..3191115) Shewanella pealeana ATCC 700345 5663013 YP_001502476.1 CDS Spea_2621 NC_009901.1 3191196 3191660 R PFAM: regulatory protein MarR; KEGG: slo:Shew_2562 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3191196..3191660) Shewanella pealeana ATCC 700345 5663014 YP_001502477.1 CDS Spea_2622 NC_009901.1 3191827 3192825 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: slo:Shew_2563 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3191827..3192825 Shewanella pealeana ATCC 700345 5663015 YP_001502478.1 CDS Spea_2623 NC_009901.1 3193062 3194048 R PFAM: Patatin; KEGG: son:SO_2836 hypothetical protein; patatin complement(3193062..3194048) Shewanella pealeana ATCC 700345 5663016 YP_001502479.1 CDS Spea_2624 NC_009901.1 3194312 3195658 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_2452 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 3194312..3195658 Shewanella pealeana ATCC 700345 5663017 YP_001502480.1 CDS Spea_2625 NC_009901.1 3196060 3196503 D KEGG: slo:Shew_2453 hypothetical protein; hypothetical protein 3196060..3196503 Shewanella pealeana ATCC 700345 5663018 YP_001502481.1 CDS Spea_2626 NC_009901.1 3196592 3197098 D PFAM: protein of unknown function DUF45; KEGG: son:SO_2840 hypothetical protein; hypothetical protein 3196592..3197098 Shewanella pealeana ATCC 700345 5663019 YP_001502482.1 CDS Spea_2627 NC_009901.1 3197346 3197744 D KEGG: sbm:Shew185_1642 hypothetical protein; hypothetical protein 3197346..3197744 Shewanella pealeana ATCC 700345 5663020 YP_001502483.1 CDS Spea_2628 NC_009901.1 3198003 3198983 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568; hypothetical protein complement(3198003..3198983) Shewanella pealeana ATCC 700345 5663021 YP_001502484.1 CDS Spea_2629 NC_009901.1 3199305 3199577 R KEGG: sdn:Sden_1131 integron integrase; integron integrase complement(3199305..3199577) Shewanella pealeana ATCC 700345 5663022 YP_001502485.1 CDS Spea_2630 NC_009901.1 3199976 3200605 D KEGG: bca:BCE_1012 hypothetical protein; hypothetical protein 3199976..3200605 Shewanella pealeana ATCC 700345 5663023 YP_001502486.1 CDS Spea_2631 NC_009901.1 3201528 3202364 R PFAM: putative transposase; KEGG: sdn:Sden_1136 transposase; putative transposase complement(3201528..3202364) Shewanella pealeana ATCC 700345 5663024 YP_001502487.1 CDS Spea_2632 NC_009901.1 3202856 3204112 R PFAM: peptidase M23B; Opacity-associated protein A; KEGG: slo:Shew_2455 peptidase M23B; peptidase M23B complement(3202856..3204112) Shewanella pealeana ATCC 700345 5663025 YP_001502488.1 CDS Spea_2633 NC_009901.1 3204371 3207427 R PFAM: SMC domain protein; KEGG: sbm:Shew185_1640 SMC domain protein; SMC domain-containing protein complement(3204371..3207427) Shewanella pealeana ATCC 700345 5663026 YP_001502489.1 CDS Spea_2634 NC_009901.1 3207424 3208569 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shw:Sputw3181_2568 nuclease SbcCD, D subunit; nuclease SbcCD subunit D complement(3207424..3208569) Shewanella pealeana ATCC 700345 5663027 YP_001502490.1 CDS avtA NC_009901.1 3208916 3210166 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3208916..3210166 Shewanella pealeana ATCC 700345 5663028 YP_001502491.1 CDS Spea_2636 NC_009901.1 3210593 3214873 D KEGG: ecj:JW5925 predicted inner membrane lipoprotein; inner membrane lipoprotein 3210593..3214873 Shewanella pealeana ATCC 700345 5663029 YP_001502492.1 CDS Spea_2637 NC_009901.1 3215044 3215883 R PFAM: penicillin-binding protein transpeptidase; KEGG: syn:slr0319 beta-lactamase; beta-lactamase complement(3215044..3215883) Shewanella pealeana ATCC 700345 5663030 YP_001502493.1 CDS Spea_2638 NC_009901.1 3215899 3216678 R PFAM: protein of unknown function DUF81; KEGG: pin:Ping_1433 permease with 5 transmembrane domains; hypothetical protein complement(3215899..3216678) Shewanella pealeana ATCC 700345 5663031 YP_001502494.1 CDS Spea_2639 NC_009901.1 3216799 3217689 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shw:Sputw3181_2570 transcriptional regulator, LysR family; LysR family transcriptional regulator 3216799..3217689 Shewanella pealeana ATCC 700345 5663032 YP_001502495.1 CDS Spea_2640 NC_009901.1 3217724 3219697 R PFAM: NERD domain protein; KEGG: slo:Shew_2466 hypothetical protein; serine/threonine protein kinase complement(3217724..3219697) Shewanella pealeana ATCC 700345 5663033 YP_001502496.1 CDS Spea_2641 NC_009901.1 3219813 3220199 R PFAM: protein of unknown function DUF1260; KEGG: slo:Shew_2467 protein of unknown function DUF1260; hypothetical protein complement(3219813..3220199) Shewanella pealeana ATCC 700345 5663034 YP_001502497.1 CDS Spea_2642 NC_009901.1 3220219 3220449 R KEGG: sbm:Shew185_1635 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(3220219..3220449) Shewanella pealeana ATCC 700345 5663035 YP_001502498.1 CDS Spea_2643 NC_009901.1 3220520 3221053 R PFAM: GCN5-related N-acetyltransferase; KEGG: slo:Shew_2469 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3220520..3221053) Shewanella pealeana ATCC 700345 5663036 YP_001502499.1 CDS Spea_2644 NC_009901.1 3221088 3221366 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: slo:Shew_2470 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3221088..3221366) Shewanella pealeana ATCC 700345 5663037 YP_001502500.1 CDS Spea_2645 NC_009901.1 3221500 3223332 R PFAM: protein of unknown function DUF885; KEGG: slo:Shew_2471 protein of unknown function DUF885; hypothetical protein complement(3221500..3223332) Shewanella pealeana ATCC 700345 5663038 YP_001502501.1 CDS Spea_2646 NC_009901.1 3223402 3223917 D PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2472 diguanylate cyclase; diguanylate cyclase 3223402..3223917 Shewanella pealeana ATCC 700345 5663039 YP_001502502.1 CDS Spea_2647 NC_009901.1 3223991 3225238 R SMART: Tetratricopeptide domain protein; KEGG: sfr:Sfri_2621 tetratricopeptide domain protein; tetratricopeptide domain-containing protein complement(3223991..3225238) Shewanella pealeana ATCC 700345 5663040 YP_001502503.1 CDS Spea_2648 NC_009901.1 3225241 3225861 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: slo:Shew_2474 TonB family protein; TonB family protein complement(3225241..3225861) Shewanella pealeana ATCC 700345 5663041 YP_001502504.1 CDS Spea_2649 NC_009901.1 3225863 3226267 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbm:Shew185_1628 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3225863..3226267) Shewanella pealeana ATCC 700345 5663042 YP_001502505.1 CDS Spea_2650 NC_009901.1 3226281 3226805 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1627 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3226281..3226805) Shewanella pealeana ATCC 700345 5663043 YP_001502506.1 CDS Spea_2651 NC_009901.1 3226805 3228160 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: shn:Shewana3_2625 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3226805..3228160) Shewanella pealeana ATCC 700345 5663044 YP_001502507.1 CDS Spea_2652 NC_009901.1 3228160 3228942 R KEGG: saz:Sama_1254 hypothetical protein; hypothetical protein complement(3228160..3228942) Shewanella pealeana ATCC 700345 5663045 YP_001502508.1 CDS Spea_2653 NC_009901.1 3229718 3232564 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xft:PD1283 TonB-dependent receptor; TonB-dependent receptor complement(3229718..3232564) Shewanella pealeana ATCC 700345 5663046 YP_001502509.1 CDS Spea_2654 NC_009901.1 3233401 3234612 R PFAM: porin Gram-negative type; KEGG: slo:Shew_2481 porin, gram-negative type; porin complement(3233401..3234612) Shewanella pealeana ATCC 700345 5663047 YP_001502510.1 CDS Spea_2655 NC_009901.1 3234846 3237245 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(3234846..3237245) Shewanella pealeana ATCC 700345 5663048 YP_001502511.1 CDS dinG NC_009901.1 3237346 3239418 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 3237346..3239418 Shewanella pealeana ATCC 700345 5663049 YP_001502512.1 CDS Spea_2657 NC_009901.1 3239427 3240200 D PFAM: protein of unknown function DUF81; KEGG: slo:Shew_2484 protein of unknown function DUF81; hypothetical protein 3239427..3240200 Shewanella pealeana ATCC 700345 5663050 YP_001502513.1 CDS Spea_2658 NC_009901.1 3240197 3240859 D KEGG: slo:Shew_2485 primosomal replication protein N'', putative; primosomal replication protein N'' 3240197..3240859 Shewanella pealeana ATCC 700345 5663051 YP_001502514.1 CDS Spea_2659 NC_009901.1 3240869 3241579 D KEGG: she:Shewmr4_2473 hypothetical protein; hypothetical protein 3240869..3241579 Shewanella pealeana ATCC 700345 5663052 YP_001502515.1 CDS Spea_2660 NC_009901.1 3241610 3242524 D PFAM: histone deacetylase superfamily; KEGG: she:Shewmr4_2474 histone deacetylase superfamily; histone deacetylase superfamily protein 3241610..3242524 Shewanella pealeana ATCC 700345 5663053 YP_001502516.1 CDS Spea_2661 NC_009901.1 3242568 3242828 D KEGG: shn:Shewana3_2635 hypothetical protein; hypothetical protein 3242568..3242828 Shewanella pealeana ATCC 700345 5663054 YP_001502517.1 CDS Spea_2662 NC_009901.1 3244655 3244972 R KEGG: slo:Shew_2489 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; helix-hairpin-helix repeat-containing competence protein ComEA complement(3244655..3244972) Shewanella pealeana ATCC 700345 5664792 YP_001502518.1 CDS Spea_2663 NC_009901.1 3245360 3246754 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: slo:Shew_2490 anion transporter; anion transporter 3245360..3246754 Shewanella pealeana ATCC 700345 5663056 YP_001502519.1 CDS Spea_2664 NC_009901.1 3246844 3248025 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: slo:Shew_2491 methionine gamma-lyase; cystathionine gamma-synthase complement(3246844..3248025) Shewanella pealeana ATCC 700345 5663057 YP_001502520.1 CDS Spea_2665 NC_009901.1 3248391 3249503 R PFAM: conserved hypothetical protein; KEGG: sbl:Sbal_1621 conserved hypothetical protein 1620; hypothetical protein complement(3248391..3249503) Shewanella pealeana ATCC 700345 5663058 YP_001502521.1 CDS Spea_2666 NC_009901.1 3249524 3250969 R PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: slo:Shew_2493 protein of unknown function DUF463, YcjX family protein; hypothetical protein complement(3249524..3250969) Shewanella pealeana ATCC 700345 5663059 YP_001502522.1 CDS Spea_2667 NC_009901.1 3251046 3251435 R TIGRFAM: shock protein C; PFAM: PspC domain protein; KEGG: slo:Shew_2494 phage shock protein C, PspC; phage shock protein C complement(3251046..3251435) Shewanella pealeana ATCC 700345 5663060 YP_001502523.1 CDS pspB NC_009901.1 3251503 3251730 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(3251503..3251730) Shewanella pealeana ATCC 700345 5663061 YP_001502524.1 CDS Spea_2669 NC_009901.1 3251759 3252436 R TIGRFAM: shock protein A; PFAM: PspA/IM30 family protein; KEGG: slo:Shew_2496 phage shock protein A, PspA; phage shock protein A complement(3251759..3252436) Shewanella pealeana ATCC 700345 5663062 YP_001502525.1 CDS Spea_2670 NC_009901.1 3252614 3253714 D KEGG: slo:Shew_2497 sigma54 specific transcriptional regulator, fis family; TIGRFAM: Transcriptional activator PspF; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Fis family transcriptional regulator 3252614..3253714 Shewanella pealeana ATCC 700345 5663063 YP_001502526.1 CDS Spea_2671 NC_009901.1 3253779 3255407 D PFAM: extracellular solute-binding protein family 5; KEGG: slo:Shew_2498 extracellular solute-binding protein, family 5; extracellular solute-binding protein 3253779..3255407 Shewanella pealeana ATCC 700345 5663064 YP_001502527.1 CDS Spea_2672 NC_009901.1 3255407 3256438 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3255407..3256438 Shewanella pealeana ATCC 700345 5663065 YP_001502528.1 CDS Spea_2673 NC_009901.1 3256425 3257315 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3256425..3257315 Shewanella pealeana ATCC 700345 5663066 YP_001502529.1 CDS Spea_2674 NC_009901.1 3257320 3258327 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: spc:Sputcn32_1497 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase 3257320..3258327 Shewanella pealeana ATCC 700345 5663067 YP_001502530.1 CDS Spea_2675 NC_009901.1 3258308 3259093 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_2556 ABC transporter related; ABC transporter-like protein 3258308..3259093 Shewanella pealeana ATCC 700345 5663068 YP_001502531.1 CDS Spea_2676 NC_009901.1 3259273 3260475 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3259273..3260475 Shewanella pealeana ATCC 700345 5663069 YP_001502532.1 CDS Spea_2677 NC_009901.1 3261119 3262984 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbm:Shew185_1597 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3261119..3262984) Shewanella pealeana ATCC 700345 5663070 YP_001502533.1 CDS Spea_2678 NC_009901.1 3263202 3263474 R PFAM: histone family protein DNA-binding protein; KEGG: sfr:Sfri_2593 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(3263202..3263474) Shewanella pealeana ATCC 700345 5663071 YP_001502534.1 CDS Spea_2679 NC_009901.1 3263731 3266088 R KEGG: slo:Shew_2506 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3263731..3266088) Shewanella pealeana ATCC 700345 5663072 YP_001502535.1 CDS clpX NC_009901.1 3266237 3267514 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3266237..3267514) Shewanella pealeana ATCC 700345 5663073 YP_001502536.1 CDS clpP NC_009901.1 3267599 3268210 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3267599..3268210) Shewanella pealeana ATCC 700345 5663074 YP_001502537.1 CDS tig NC_009901.1 3268300 3269604 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3268300..3269604) Shewanella pealeana ATCC 700345 5663075 YP_001502538.1 CDS Spea_2683 NC_009901.1 3270626 3271480 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3270626..3271480 Shewanella pealeana ATCC 700345 5664795 YP_001502539.1 CDS cysS NC_009901.1 3271676 3273055 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3271676..3273055) Shewanella pealeana ATCC 700345 5663077 YP_001502540.1 CDS Spea_2685 NC_009901.1 3273368 3273862 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: slo:Shew_2512 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 3273368..3273862 Shewanella pealeana ATCC 700345 5663078 YP_001502541.1 CDS Spea_2686 NC_009901.1 3273873 3274589 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3273873..3274589 Shewanella pealeana ATCC 700345 5663079 YP_001502542.1 CDS Spea_2687 NC_009901.1 3274656 3275438 R PFAM: tRNA--hydroxylase; KEGG: slo:Shew_2514 tRNA--hydroxylase; tRNA--hydroxylase complement(3274656..3275438) Shewanella pealeana ATCC 700345 5663080 YP_001502543.1 CDS Spea_2688 NC_009901.1 3275646 3276242 D PFAM: protein of unknown function DUF1282; KEGG: shw:Sputw3181_2618 protein of unknown function DUF1282; hypothetical protein 3275646..3276242 Shewanella pealeana ATCC 700345 5663081 YP_001502544.1 CDS Spea_2689 NC_009901.1 3276320 3277990 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3276320..3277990) Shewanella pealeana ATCC 700345 5663082 YP_001502545.1 CDS Spea_2690 NC_009901.1 3278172 3280466 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: slo:Shew_2517 ferrous iron transport protein B; ferrous iron transport protein B complement(3278172..3280466) Shewanella pealeana ATCC 700345 5663083 YP_001502546.1 CDS Spea_2691 NC_009901.1 3280459 3280698 R PFAM: FeoA family protein; KEGG: shw:Sputw3181_2621 FeoA family protein; FeoA family protein complement(3280459..3280698) Shewanella pealeana ATCC 700345 5663084 YP_001502547.1 CDS Spea_2692 NC_009901.1 3281121 3282080 D TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: slo:Shew_2519 cytochrome c family protein; cytochrome C family protein 3281121..3282080 Shewanella pealeana ATCC 700345 5663085 YP_001502548.1 CDS Spea_2693 NC_009901.1 3282096 3284216 D KEGG: slo:Shew_2520 outer membrane protein, putative; outer membrane protein 3282096..3284216 Shewanella pealeana ATCC 700345 5663086 YP_001502549.1 CDS Spea_2694 NC_009901.1 3284311 3286233 D KEGG: slo:Shew_2521 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 3284311..3286233 Shewanella pealeana ATCC 700345 5663087 YP_001502550.1 CDS Spea_2695 NC_009901.1 3286358 3288517 D KEGG: slo:Shew_2522 decaheme cytochrome c; decaheme cytochrome c 3286358..3288517 Shewanella pealeana ATCC 700345 5663088 YP_001502551.1 CDS Spea_2696 NC_009901.1 3289024 3291492 D KEGG: spc:Sputcn32_1479 hypothetical protein; hypothetical protein 3289024..3291492 Shewanella pealeana ATCC 700345 5663089 YP_001502552.1 CDS Spea_2697 NC_009901.1 3291948 3294185 D KEGG: son:SO_1779 decaheme cytochrome c; decaheme cytochrome c 3291948..3294185 Shewanella pealeana ATCC 700345 5663090 YP_001502553.1 CDS Spea_2698 NC_009901.1 3294567 3296582 D KEGG: sfr:Sfri_2637 decaheme cytochrome c; decaheme cytochrome c 3294567..3296582 Shewanella pealeana ATCC 700345 5663091 YP_001502554.1 CDS Spea_2699 NC_009901.1 3296698 3297684 D TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: slo:Shew_2526 cytochrome c family protein; cytochrome C family protein 3296698..3297684 Shewanella pealeana ATCC 700345 5663092 YP_001502555.1 CDS Spea_2700 NC_009901.1 3297697 3299796 D KEGG: slo:Shew_2527 outer membrane protein precursor MtrB; outer membrane protein MtrB 3297697..3299796 Shewanella pealeana ATCC 700345 5663093 YP_001502556.1 CDS Spea_2701 NC_009901.1 3300658 3301236 D KEGG: sbl:Sbal_1586 hypothetical protein; hypothetical protein 3300658..3301236 Shewanella pealeana ATCC 700345 5663094 YP_001502557.1 CDS Spea_2702 NC_009901.1 3301259 3301861 D KEGG: saz:Sama_1203 hypothetical protein; hypothetical protein 3301259..3301861 Shewanella pealeana ATCC 700345 5663095 YP_001502558.1 CDS Spea_2703 NC_009901.1 3302028 3303179 D PFAM: sugar diacid recognition domain protein; KEGG: slo:Shew_2528 transcriptional regulator, CdaR; transcriptional regulator CdaR 3302028..3303179 Shewanella pealeana ATCC 700345 5663096 YP_001502559.1 CDS Spea_2704 NC_009901.1 3303193 3303729 D KEGG: vch:VC0502 type IV pilin, putative; type IV pilin 3303193..3303729 Shewanella pealeana ATCC 700345 5663097 YP_001502560.1 CDS Spea_2705 NC_009901.1 3303792 3304766 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: vpa:VPA0248 putative outer membrane protein OmpA; OmpA/MotB domain-containing protein complement(3303792..3304766) Shewanella pealeana ATCC 700345 5663098 YP_001502561.1 CDS Spea_2706 NC_009901.1 3304763 3305872 R KEGG: vha:VIBHAR_05979 hypothetical protein; hypothetical protein complement(3304763..3305872) Shewanella pealeana ATCC 700345 5663099 YP_001502562.1 CDS Spea_2707 NC_009901.1 3305874 3306599 R KEGG: shm:Shewmr7_2311 hypothetical protein; hypothetical protein complement(3305874..3306599) Shewanella pealeana ATCC 700345 5663100 YP_001502563.1 CDS Spea_2708 NC_009901.1 3306603 3309536 R KEGG: sbm:Shew185_0590 P pilus assembly protein porin PapC-like protein; hypothetical protein complement(3306603..3309536) Shewanella pealeana ATCC 700345 5663101 YP_001502564.1 CDS Spea_2709 NC_009901.1 3309533 3310066 R hypothetical protein complement(3309533..3310066) Shewanella pealeana ATCC 700345 5663102 YP_001502565.1 CDS Spea_2710 NC_009901.1 3310103 3310681 R hypothetical protein complement(3310103..3310681) Shewanella pealeana ATCC 700345 5663103 YP_001502566.1 CDS Spea_2711 NC_009901.1 3311107 3314004 R KEGG: vha:VIBHAR_05990 hypothetical protein; hypothetical protein complement(3311107..3314004) Shewanella pealeana ATCC 700345 5663104 YP_001502567.1 CDS Spea_2712 NC_009901.1 3314328 3315257 R KEGG: vha:VIBHAR_02615 hypothetical protein; hypothetical protein complement(3314328..3315257) Shewanella pealeana ATCC 700345 5663105 YP_001502568.1 CDS Spea_2713 NC_009901.1 3315554 3316912 D PFAM: Gluconate transporter; Citrate transporter; KEGG: slo:Shew_2533 gluconate transporter; gluconate transporter 3315554..3316912 Shewanella pealeana ATCC 700345 5663106 YP_001502569.1 CDS Spea_2714 NC_009901.1 3317068 3318222 D PFAM: glycerate kinase; KEGG: slo:Shew_2534 glycerate kinase; glycerate kinase 3317068..3318222 Shewanella pealeana ATCC 700345 5663107 YP_001502570.1 CDS Spea_2715 NC_009901.1 3318677 3320323 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: slo:Shew_2535 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 3318677..3320323 Shewanella pealeana ATCC 700345 5663108 YP_001502571.1 CDS Spea_2716 NC_009901.1 3320424 3321974 R KEGG: vpa:VP1633 putative RTX toxin; hypothetical protein complement(3320424..3321974) Shewanella pealeana ATCC 700345 5663109 YP_001502572.1 CDS Spea_2717 NC_009901.1 3322370 3323242 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3322370..3323242) Shewanella pealeana ATCC 700345 5663110 YP_001502573.1 CDS Spea_2718 NC_009901.1 3323498 3323869 D hypothetical protein 3323498..3323869 Shewanella pealeana ATCC 700345 5663111 YP_001502574.1 CDS Spea_2719 NC_009901.1 3323983 3325482 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmw:Mmwyl1_1752 diguanylate cyclase/phosphodiesterase; diguanylate cyclase complement(3323983..3325482) Shewanella pealeana ATCC 700345 5663112 YP_001502575.1 CDS Spea_2720 NC_009901.1 3325479 3326480 R PFAM: basic membrane lipoprotein; KEGG: hch:HCH_02309 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; basic membrane lipoprotein complement(3325479..3326480) Shewanella pealeana ATCC 700345 5663113 YP_001502576.1 CDS Spea_2721 NC_009901.1 3327746 3328504 D hypothetical protein 3327746..3328504 Shewanella pealeana ATCC 700345 5663114 YP_001502577.1 CDS Spea_2722 NC_009901.1 3328529 3329527 D hypothetical protein 3328529..3329527 Shewanella pealeana ATCC 700345 5663115 YP_001502578.1 CDS Spea_2723 NC_009901.1 3329500 3330129 D KEGG: mmw:Mmwyl1_1032 hypothetical protein; hypothetical protein 3329500..3330129 Shewanella pealeana ATCC 700345 5663116 YP_001502579.1 CDS Spea_2724 NC_009901.1 3330191 3331750 D PFAM: Lytic transglycosylase catalytic; KEGG: pha:PSHAb0242 putative transglycosylase; lytic transglycosylase 3330191..3331750 Shewanella pealeana ATCC 700345 5663117 YP_001502580.1 CDS Spea_2725 NC_009901.1 3331771 3331941 D KEGG: vfi:VFA0327 hypothetical protein; hypothetical protein 3331771..3331941 Shewanella pealeana ATCC 700345 5663118 YP_001502581.1 CDS Spea_2726 NC_009901.1 3331944 3332681 D KEGG: pha:PSHAb0243 putative orphan protein; hypothetical protein 3331944..3332681 Shewanella pealeana ATCC 700345 5663119 YP_001502582.1 CDS Spea_2727 NC_009901.1 3332821 3334554 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: sbl:Sbal_1561 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase subunit alpha/beta complement(3332821..3334554) Shewanella pealeana ATCC 700345 5663120 YP_001502583.1 CDS Spea_2728 NC_009901.1 3334779 3335696 D PFAM: pseudouridine synthase; KEGG: sfr:Sfri_0787 pseudouridine synthase; pseudouridine synthase 3334779..3335696 Shewanella pealeana ATCC 700345 5663121 YP_001502584.1 CDS Spea_2729 NC_009901.1 3335785 3336525 R PFAM: cytochrome B561; KEGG: slo:Shew_2692 cytochrome b561; cytochrome B561 complement(3335785..3336525) Shewanella pealeana ATCC 700345 5663122 YP_001502585.1 CDS Spea_2730 NC_009901.1 3336732 3337397 R PFAM: Glutathione S-transferase domain; KEGG: sfr:Sfri_2500 glutathione S-transferase, C-terminal domain protein; glutathione S-transferase domain-containing protein complement(3336732..3337397) Shewanella pealeana ATCC 700345 5663123 YP_001502586.1 CDS Spea_2731 NC_009901.1 3337602 3338450 D PFAM: MscS Mechanosensitive ion channel; KEGG: sfr:Sfri_2100 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3337602..3338450 Shewanella pealeana ATCC 700345 5663124 YP_001502587.1 CDS Spea_2732 NC_009901.1 3338526 3338975 R KEGG: sbm:Shew185_1552 hypothetical protein; hypothetical protein complement(3338526..3338975) Shewanella pealeana ATCC 700345 5663125 YP_001502588.1 CDS Spea_2733 NC_009901.1 3339271 3340413 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sfr:Sfri_1368 3-beta hydroxysteroid dehydrogenase/isomerase; 3-beta hydroxysteroid dehydrogenase/isomerase complement(3339271..3340413) Shewanella pealeana ATCC 700345 5663126 YP_001502589.1 CDS Spea_2734 NC_009901.1 3340420 3342141 R Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase complement(3340420..3342141) Shewanella pealeana ATCC 700345 5663127 YP_001502590.1 CDS Spea_2735 NC_009901.1 3342147 3343052 R PFAM: alpha/beta hydrolase fold; KEGG: sbm:Shew185_1547 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3342147..3343052) Shewanella pealeana ATCC 700345 5663128 YP_001502591.1 CDS Spea_2736 NC_009901.1 3343143 3344192 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3343143..3344192) Shewanella pealeana ATCC 700345 5663129 YP_001502592.1 CDS Spea_2737 NC_009901.1 3344453 3345874 R KEGG: spc:Sputcn32_1444 hypothetical protein; hypothetical protein complement(3344453..3345874) Shewanella pealeana ATCC 700345 5663130 YP_001502593.1 CDS Spea_2738 NC_009901.1 3345901 3347091 R KEGG: slo:Shew_1711 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(3345901..3347091) Shewanella pealeana ATCC 700345 5663131 YP_001502594.1 CDS Spea_2739 NC_009901.1 3347332 3347583 D PFAM: protein of unknown function DUF1289; KEGG: slo:Shew_1710 protein of unknown function DUF1289; hypothetical protein 3347332..3347583 Shewanella pealeana ATCC 700345 5663132 YP_001502595.1 CDS Spea_2740 NC_009901.1 3347630 3348004 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: slo:Shew_1709 HNH nuclease; hypothetical protein complement(3347630..3348004) Shewanella pealeana ATCC 700345 5663133 YP_001502596.1 CDS Spea_2741 NC_009901.1 3348453 3350438 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sbm:Shew185_1542 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(3348453..3350438) Shewanella pealeana ATCC 700345 5663134 YP_001502597.1 CDS Spea_2742 NC_009901.1 3351012 3351722 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3351012..3351722) Shewanella pealeana ATCC 700345 5663135 YP_001502598.1 CDS Spea_2743 NC_009901.1 3351744 3352562 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3351744..3352562) Shewanella pealeana ATCC 700345 5663136 YP_001502599.1 CDS Spea_2744 NC_009901.1 3352594 3354246 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease complement(3352594..3354246) Shewanella pealeana ATCC 700345 5663137 YP_001502600.1 CDS Spea_2745 NC_009901.1 3354333 3356588 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3354333..3356588) Shewanella pealeana ATCC 700345 5663138 YP_001502601.1 CDS Spea_2746 NC_009901.1 3356864 3357364 D PFAM: amino acid-binding ACT domain protein; KEGG: slo:Shew_1697 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 3356864..3357364 Shewanella pealeana ATCC 700345 5663139 YP_001502602.1 CDS Spea_2747 NC_009901.1 3357452 3358237 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_2463 response regulator receiver domain protein (CheY-like); diguanylate cyclase complement(3357452..3358237) Shewanella pealeana ATCC 700345 5663140 YP_001502603.1 CDS Spea_2748 NC_009901.1 3358517 3359419 R PFAM: regulatory protein LysR; KEGG: vco:VC0395_A0310 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3358517..3359419) Shewanella pealeana ATCC 700345 5663141 YP_001502604.1 CDS Spea_2749 NC_009901.1 3359535 3360245 D hypothetical protein 3359535..3360245 Shewanella pealeana ATCC 700345 5663142 YP_001502605.1 CDS Spea_2750 NC_009901.1 3360516 3361742 R KEGG: vpa:VPA0990 hypothetical protein; hypothetical protein complement(3360516..3361742) Shewanella pealeana ATCC 700345 5663143 YP_001502606.1 CDS Spea_2751 NC_009901.1 3362314 3363132 D PFAM: glycoside hydrolase family 16; KEGG: cac:CAC2807 endo-1,3(4)-beta-glucanase family 16; glycoside hydrolase family protein 3362314..3363132 Shewanella pealeana ATCC 700345 5663144 YP_001502607.1 CDS Spea_2752 NC_009901.1 3363498 3364316 D KEGG: shn:Shewana3_2738 hypothetical protein; hypothetical protein 3363498..3364316 Shewanella pealeana ATCC 700345 5663145 YP_001502608.1 CDS Spea_2753 NC_009901.1 3364417 3364947 R KEGG: shn:Shewana3_2741 hypothetical protein; hypothetical protein complement(3364417..3364947) Shewanella pealeana ATCC 700345 5663146 YP_001502609.1 CDS Spea_2754 NC_009901.1 3365183 3368101 R PFAM: Thrombospondin type 3 repeat; peptidase domain protein; Peptidase M9A collagenase domain protein; Peptidase M9 domain; KEGG: slo:Shew_1685 microbial collagenase; collagenase complement(3365183..3368101) Shewanella pealeana ATCC 700345 5663147 YP_001502610.1 CDS Spea_2755 NC_009901.1 3368886 3369479 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_1684 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3368886..3369479 Shewanella pealeana ATCC 700345 5663148 YP_001502611.1 CDS Spea_2756 NC_009901.1 3369500 3370066 D PFAM: protein of unknown function DUF1415; KEGG: shw:Sputw3181_2672 protein of unknown function DUF1415; hypothetical protein 3369500..3370066 Shewanella pealeana ATCC 700345 5663149 YP_001502612.1 CDS Spea_2757 NC_009901.1 3370138 3370902 D PFAM: ribonuclease H; KEGG: sdn:Sden_0758 ribonuclease H; ribonuclease H 3370138..3370902 Shewanella pealeana ATCC 700345 5663150 YP_001502613.1 CDS Spea_2758 NC_009901.1 3370984 3371403 D KEGG: slo:Shew_1678 hypothetical protein; hypothetical protein 3370984..3371403 Shewanella pealeana ATCC 700345 5663151 YP_001502614.1 CDS Spea_2759 NC_009901.1 3371557 3372918 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: slo:Shew_1677 leucyl aminopeptidase; leucyl aminopeptidase 3371557..3372918 Shewanella pealeana ATCC 700345 5663152 YP_001502615.1 CDS Spea_2760 NC_009901.1 3373287 3374360 D KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 3373287..3374360 Shewanella pealeana ATCC 700345 5663153 YP_001502616.1 CDS Spea_2761 NC_009901.1 3374543 3374851 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: vco:VC0395_0290 hypothetical protein; transcriptional antiterminator Rof 3374543..3374851 Shewanella pealeana ATCC 700345 5663154 YP_001502617.1 CDS Spea_2762 NC_009901.1 3375009 3375488 D KEGG: tcx:Tcr_1988 hypothetical protein; hypothetical protein 3375009..3375488 Shewanella pealeana ATCC 700345 5663155 YP_001502618.1 CDS Spea_2763 NC_009901.1 3375598 3376806 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: ppr:PBPRB1458 putative NupC family protein (permease); nucleoside transporter complement(3375598..3376806) Shewanella pealeana ATCC 700345 5663156 YP_001502619.1 CDS Spea_2764 NC_009901.1 3377256 3378335 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: vfi:VFA0483 rod shape-determining protein RodA; rod shape-determining protein RodA complement(3377256..3378335) Shewanella pealeana ATCC 700345 5663157 YP_001502620.1 CDS Spea_2765 NC_009901.1 3378678 3379634 R PFAM: UspA domain protein; KEGG: vch:VCA0159 hypothetical protein; UspA domain-containing protein complement(3378678..3379634) Shewanella pealeana ATCC 700345 5663158 YP_001502621.1 CDS Spea_2766 NC_009901.1 3380079 3380564 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRA1446 putative lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3380079..3380564) Shewanella pealeana ATCC 700345 5663159 YP_001502622.1 CDS Spea_2767 NC_009901.1 3381009 3381653 D PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: vha:VIBHAR_04811 hypothetical protein; resolvase domain-containing protein 3381009..3381653 Shewanella pealeana ATCC 700345 5663160 YP_001502623.1 CDS Spea_2768 NC_009901.1 3381662 3382861 D PFAM: major facilitator superfamily MFS_1; KEGG: vha:VIBHAR_04810 hypothetical protein; major facilitator transporter 3381662..3382861 Shewanella pealeana ATCC 700345 5663161 YP_001502624.1 CDS Spea_2769 NC_009901.1 3383175 3384068 R PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB0725 hypothetical protein; AraC family transcriptional regulator complement(3383175..3384068) Shewanella pealeana ATCC 700345 5663162 YP_001502625.1 CDS Spea_2770 NC_009901.1 3384155 3385714 R KEGG: rpd:RPD_2526 tetratricopeptide TPR_2; hypothetical protein complement(3384155..3385714) Shewanella pealeana ATCC 700345 5663163 YP_001502626.1 CDS Spea_2771 NC_009901.1 3386233 3387801 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_1676 ABC transporter-related protein; ABC transporter-like protein complement(3386233..3387801) Shewanella pealeana ATCC 700345 5663164 YP_001502627.1 CDS Spea_2772 NC_009901.1 3388128 3390401 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: shn:Shewana3_2761 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(3388128..3390401) Shewanella pealeana ATCC 700345 5663165 YP_001502628.1 CDS Spea_2773 NC_009901.1 3390501 3390899 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: she:Shewmr4_2588 transcriptional regulator, MerR family; MerR family transcriptional regulator 3390501..3390899 Shewanella pealeana ATCC 700345 5663166 YP_001502629.1 CDS Spea_2774 NC_009901.1 3390905 3392938 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2589 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(3390905..3392938) Shewanella pealeana ATCC 700345 5663167 YP_001502630.1 CDS Spea_2775 NC_009901.1 3393056 3393283 R KEGG: shw:Sputw3181_2696 hypothetical protein; hypothetical protein complement(3393056..3393283) Shewanella pealeana ATCC 700345 5663168 YP_001502631.1 CDS Spea_2776 NC_009901.1 3393456 3393581 R KEGG: shn:Shewana3_2765 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3393456..3393581) Shewanella pealeana ATCC 700345 5663169 YP_001502632.1 CDS fabG NC_009901.1 3393612 3394370 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3393612..3394370) Shewanella pealeana ATCC 700345 5663170 YP_001502633.1 CDS Spea_2778 NC_009901.1 3394375 3395304 R KEGG: slo:Shew_1672 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(3394375..3395304) Shewanella pealeana ATCC 700345 5663171 YP_001502634.1 CDS Spea_2779 NC_009901.1 3395395 3396573 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: slo:Shew_1671 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3395395..3396573) Shewanella pealeana ATCC 700345 5663172 YP_001502635.1 CDS Spea_2780 NC_009901.1 3396573 3397364 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3396573..3397364) Shewanella pealeana ATCC 700345 5663173 YP_001502636.1 CDS Spea_2781 NC_009901.1 3397414 3398571 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbm:Shew185_1491 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3397414..3398571) Shewanella pealeana ATCC 700345 5663174 YP_001502637.1 CDS Spea_2782 NC_009901.1 3398830 3400329 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: spc:Sputcn32_1398 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(3398830..3400329) Shewanella pealeana ATCC 700345 5663175 YP_001502638.1 CDS Spea_2783 NC_009901.1 3400507 3401697 R KEGG: sdn:Sden_1943 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3400507..3401697) Shewanella pealeana ATCC 700345 5663176 YP_001502639.1 CDS Spea_2784 NC_009901.1 3402046 3402990 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3402046..3402990) Shewanella pealeana ATCC 700345 5663177 YP_001502640.1 CDS Spea_2785 NC_009901.1 3403067 3403468 R KEGG: slo:Shew_2552 hypothetical protein; hypothetical protein complement(3403067..3403468) Shewanella pealeana ATCC 700345 5663178 YP_001502641.1 CDS Spea_2786 NC_009901.1 3403713 3404486 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shw:Sputw3181_2708 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3403713..3404486 Shewanella pealeana ATCC 700345 5663179 YP_001502642.1 CDS Spea_2787 NC_009901.1 3404570 3405217 R receptor for colicin S4; outer membrane protein W complement(3404570..3405217) Shewanella pealeana ATCC 700345 5663180 YP_001502643.1 CDS Spea_2788 NC_009901.1 3405700 3406422 R hypothetical protein complement(3405700..3406422) Shewanella pealeana ATCC 700345 5663181 YP_001502644.1 CDS Spea_2789 NC_009901.1 3406556 3407149 R PFAM: protein of unknown function DUF925; KEGG: she:Shewmr4_2602 protein of unknown function DUF925; hypothetical protein complement(3406556..3407149) Shewanella pealeana ATCC 700345 5663182 YP_001502645.1 CDS Spea_2790 NC_009901.1 3407228 3407626 R KEGG: son:SO_1913 hypothetical protein; hypothetical protein complement(3407228..3407626) Shewanella pealeana ATCC 700345 5663183 YP_001502646.1 CDS Spea_2791 NC_009901.1 3407670 3408536 R KEGG: slo:Shew_2556 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(3407670..3408536) Shewanella pealeana ATCC 700345 5663184 YP_001502647.1 CDS Spea_2792 NC_009901.1 3408603 3409538 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: slo:Shew_2557 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3408603..3409538) Shewanella pealeana ATCC 700345 5663185 YP_001502648.1 CDS Spea_2793 NC_009901.1 3409881 3410765 D TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: slo:Shew_2558 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 3409881..3410765 Shewanella pealeana ATCC 700345 5663186 YP_001502649.1 CDS Spea_2794 NC_009901.1 3411130 3412665 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(3411130..3412665) Shewanella pealeana ATCC 700345 5663187 YP_001502650.1 CDS Spea_2795 NC_009901.1 3413054 3414958 R PFAM: AMP-dependent synthetase and ligase; KEGG: sbm:Shew185_2844 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3413054..3414958) Shewanella pealeana ATCC 700345 5663188 YP_001502651.1 CDS Spea_2796 NC_009901.1 3415330 3415728 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: slo:Shew_2569 transcriptional regulator, MerR family; MerR family transcriptional regulator 3415330..3415728 Shewanella pealeana ATCC 700345 5663189 YP_001502652.1 CDS Spea_2797 NC_009901.1 3415858 3417027 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: slo:Shew_2570 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3415858..3417027 Shewanella pealeana ATCC 700345 5663190 YP_001502653.1 CDS Spea_2798 NC_009901.1 3417059 3418720 D PFAM: carboxyl transferase; KEGG: sdn:Sden_2246 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3417059..3418720 Shewanella pealeana ATCC 700345 5663191 YP_001502654.1 CDS Spea_2799 NC_009901.1 3418779 3419657 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: slo:Shew_2572 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3418779..3419657 Shewanella pealeana ATCC 700345 5663192 YP_001502655.1 CDS Spea_2800 NC_009901.1 3419659 3421749 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: slo:Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain ATP-binding 3419659..3421749 Shewanella pealeana ATCC 700345 5663193 YP_001502656.1 CDS Spea_2802 NC_009901.1 3422068 3422973 D PFAM: pyruvate carboxyltransferase; KEGG: slo:Shew_2574 pyruvate carboxyltransferase; pyruvate carboxyltransferase 3422068..3422973 Shewanella pealeana ATCC 700345 5664796 YP_001502657.1 CDS Spea_2803 NC_009901.1 3423121 3423855 D KEGG: slo:Shew_2575 3-oxoacid CoA-transferase, A subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3423121..3423855 Shewanella pealeana ATCC 700345 5663195 YP_001502658.1 CDS Spea_2804 NC_009901.1 3423868 3424524 D KEGG: slo:Shew_2576 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3423868..3424524 Shewanella pealeana ATCC 700345 5663196 YP_001502659.1 CDS Spea_2805 NC_009901.1 3424616 3425653 D PFAM: aminoglycoside phosphotransferase; KEGG: sdn:Sden_2943 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 3424616..3425653 Shewanella pealeana ATCC 700345 5663197 YP_001502660.1 CDS Spea_2806 NC_009901.1 3425714 3426127 R KEGG: shn:Shewana3_0471 hypothetical protein; hypothetical protein complement(3425714..3426127) Shewanella pealeana ATCC 700345 5663198 YP_001502661.1 CDS Spea_2807 NC_009901.1 3426311 3429436 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mmw:Mmwyl1_1016 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(3426311..3429436) Shewanella pealeana ATCC 700345 5663199 YP_001502662.1 CDS Spea_2808 NC_009901.1 3429470 3430606 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit complement(3429470..3430606) Shewanella pealeana ATCC 700345 5663200 YP_001502663.1 CDS Spea_2809 NC_009901.1 3430860 3431537 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5111 DNA-binding response regulator ColR, putative; two component transcriptional regulator 3430860..3431537 Shewanella pealeana ATCC 700345 5663201 YP_001502664.1 CDS Spea_2810 NC_009901.1 3431534 3432811 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfr:Sfri_3675 periplasmic sensor signal transduction histidine kinase; histidine kinase 3431534..3432811 Shewanella pealeana ATCC 700345 5663202 YP_001502665.1 CDS Spea_2811 NC_009901.1 3432844 3433305 D KEGG: vfi:VF1339 hypothetical protein; hypothetical protein 3432844..3433305 Shewanella pealeana ATCC 700345 5663203 YP_001502666.1 CDS Spea_2812 NC_009901.1 3433543 3434943 R PFAM: cytochrome c552; KEGG: shn:Shewana3_0658 cytochrome c552; nitrite reductase complement(3433543..3434943) Shewanella pealeana ATCC 700345 5663204 YP_001502667.1 CDS Spea_2813 NC_009901.1 3435135 3435572 D KEGG: sdn:Sden_2534 hypothetical protein; hypothetical protein 3435135..3435572 Shewanella pealeana ATCC 700345 5663205 YP_001502668.1 CDS Spea_2814 NC_009901.1 3435641 3435988 R PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0365 translation initiation inhibitor; endoribonuclease L-PSP complement(3435641..3435988) Shewanella pealeana ATCC 700345 5663206 YP_001502669.1 CDS Spea_2815 NC_009901.1 3436164 3436676 D KEGG: spc:Sputcn32_0630 hypothetical protein; hypothetical protein 3436164..3436676 Shewanella pealeana ATCC 700345 5663207 YP_001502670.1 CDS Spea_2816 NC_009901.1 3436753 3437478 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(3436753..3437478) Shewanella pealeana ATCC 700345 5663208 YP_001502671.1 CDS Spea_2817 NC_009901.1 3437557 3438222 R TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfr:Sfri_3683 4Fe-4S ferredoxin, iron-sulfur binding domain protein; dimethylsulfoxide reductase subunit B complement(3437557..3438222) Shewanella pealeana ATCC 700345 5663209 YP_001502672.1 CDS Spea_2818 NC_009901.1 3438237 3440759 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: spc:Sputcn32_0627 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; anaerobic dimethyl sulfoxide reductase subunit A complement(3438237..3440759) Shewanella pealeana ATCC 700345 5663210 YP_001502673.1 CDS Spea_2819 NC_009901.1 3440799 3442823 R KEGG: sfr:Sfri_3685 outer membrane protein; outer membrane protein complement(3440799..3442823) Shewanella pealeana ATCC 700345 5663211 YP_001502674.1 CDS Spea_2820 NC_009901.1 3442841 3443779 R TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: sfr:Sfri_3686 cytochrome c family protein; cytochrome C family protein complement(3442841..3443779) Shewanella pealeana ATCC 700345 5663212 YP_001502675.1 CDS Spea_2821 NC_009901.1 3444514 3444933 D KEGG: cps:CPS_0255 isoprenylcysteine carboxyl methyltransferase family protein; isoprenylcysteine carboxyl methyltransferase family protein 3444514..3444933 Shewanella pealeana ATCC 700345 5663213 YP_001502676.1 CDS Spea_2822 NC_009901.1 3445085 3446542 R PFAM: protein of unknown function DUF1176; protein of unknown function DUF1311; KEGG: par:Psyc_1081 hypothetical protein; hypothetical protein complement(3445085..3446542) Shewanella pealeana ATCC 700345 5663214 YP_001502677.1 CDS Spea_2823 NC_009901.1 3446895 3447182 D hypothetical protein 3446895..3447182 Shewanella pealeana ATCC 700345 5663215 YP_001502678.1 CDS Spea_2824 NC_009901.1 3447229 3447912 D hypothetical protein 3447229..3447912 Shewanella pealeana ATCC 700345 5663216 YP_001502679.1 CDS Spea_2825 NC_009901.1 3448032 3449135 R KEGG: rba:RB8157 hypothetical protein; MoxR-like protein ATPase-like protein complement(3448032..3449135) Shewanella pealeana ATCC 700345 5663217 YP_001502680.1 CDS Spea_2826 NC_009901.1 3449144 3450406 R KEGG: dsy:DSY0956 hypothetical protein; hypothetical protein complement(3449144..3450406) Shewanella pealeana ATCC 700345 5663218 YP_001502681.1 CDS Spea_2827 NC_009901.1 3450504 3452894 D PFAM: BRCT domain protein; leucine-rich repeat protein; KEGG: ana:alr0124 leucine-rich-repeat protein; hypothetical protein 3450504..3452894 Shewanella pealeana ATCC 700345 5663219 YP_001502682.1 CDS Spea_2828 NC_009901.1 3452857 3455424 D KEGG: ana:alr0124 leucine-rich-repeat protein; hypothetical protein 3452857..3455424 Shewanella pealeana ATCC 700345 5663220 YP_001502683.1 CDS Spea_2829 NC_009901.1 3455550 3455864 D KEGG: shm:Shewmr7_3723 hypothetical protein; hypothetical protein 3455550..3455864 Shewanella pealeana ATCC 700345 5663221 YP_001502684.1 CDS Spea_2830 NC_009901.1 3455910 3456776 D hypothetical protein 3455910..3456776 Shewanella pealeana ATCC 700345 5663222 YP_001502685.1 CDS Spea_2831 NC_009901.1 3456806 3457774 D KEGG: bam:Bamb_3528 hypothetical protein; hypothetical protein 3456806..3457774 Shewanella pealeana ATCC 700345 5663223 YP_001502686.1 CDS Spea_2832 NC_009901.1 3457764 3458705 D KEGG: xcb:XC_1844 hypothetical protein; hypothetical protein 3457764..3458705 Shewanella pealeana ATCC 700345 5663224 YP_001502687.1 CDS Spea_2833 NC_009901.1 3459004 3459594 D hypothetical protein 3459004..3459594 Shewanella pealeana ATCC 700345 5663225 YP_001502688.1 CDS Spea_2834 NC_009901.1 3459591 3459947 D hypothetical protein 3459591..3459947 Shewanella pealeana ATCC 700345 5663226 YP_001502689.1 CDS Spea_2835 NC_009901.1 3460066 3461265 R KEGG: mmz:MmarC7_1679 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(3460066..3461265) Shewanella pealeana ATCC 700345 5663227 YP_001502690.1 CDS Spea_2836 NC_009901.1 3461462 3462604 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 3461462..3462604 Shewanella pealeana ATCC 700345 5663228 YP_001502691.1 CDS Spea_2837 NC_009901.1 3462838 3463395 D hypothetical protein 3462838..3463395 Shewanella pealeana ATCC 700345 5663229 YP_001502692.1 CDS Spea_2838 NC_009901.1 3463622 3464182 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(3463622..3464182) Shewanella pealeana ATCC 700345 5663230 YP_001502693.1 CDS Spea_2839 NC_009901.1 3464186 3464599 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_1610 protein of unknown function DUF1568; hypothetical protein complement(3464186..3464599) Shewanella pealeana ATCC 700345 5663231 YP_001502694.1 CDS Spea_2841 NC_009901.1 3465073 3465975 R KEGG: rha:RHA1_ro02516 possible hydrolase; putative hydrolase complement(3465073..3465975) Shewanella pealeana ATCC 700345 5664797 YP_001502695.1 CDS Spea_2842 NC_009901.1 3466161 3467645 R KEGG: bur:Bcep18194_B3028 hypothetical protein; hypothetical protein complement(3466161..3467645) Shewanella pealeana ATCC 700345 5663233 YP_001502696.1 CDS Spea_2843 NC_009901.1 3467818 3470160 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_0213 TonB dependent receptor, putative; TonB-dependent receptor complement(3467818..3470160) Shewanella pealeana ATCC 700345 5663234 YP_001502697.1 CDS Spea_2844 NC_009901.1 3470230 3471213 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_2148 transcriptional regulator, LysR family; LysR family transcriptional regulator 3470230..3471213 Shewanella pealeana ATCC 700345 5663235 YP_001502698.1 CDS Spea_2845 NC_009901.1 3471752 3472459 R hypothetical protein complement(3471752..3472459) Shewanella pealeana ATCC 700345 5663236 YP_001502699.1 CDS Spea_2846 NC_009901.1 3472661 3473674 R hypothetical protein complement(3472661..3473674) Shewanella pealeana ATCC 700345 5663237 YP_001502700.1 CDS Spea_2847 NC_009901.1 3474643 3475680 D PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cps:CPS_0377 ISCps1, transposase; transposase IS116/IS110/IS902 family protein 3474643..3475680 Shewanella pealeana ATCC 700345 5663238 YP_001502701.1 CDS Spea_2848 NC_009901.1 3476204 3476770 R PFAM: LemA family protein; KEGG: ilo:IL1567 uncharacterized conserved membrane protein, LemA family; LemA family protein complement(3476204..3476770) Shewanella pealeana ATCC 700345 5663239 YP_001502702.1 CDS Spea_2849 NC_009901.1 3476892 3478154 R KEGG: ilo:IL1568 predicted membrane protein; hypothetical protein complement(3476892..3478154) Shewanella pealeana ATCC 700345 5663240 YP_001502703.1 CDS Spea_2850 NC_009901.1 3478141 3479472 R KEGG: ilo:IL1568 predicted membrane protein; hypothetical protein complement(3478141..3479472) Shewanella pealeana ATCC 700345 5663241 YP_001502704.1 CDS Spea_2851 NC_009901.1 3480105 3480683 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(3480105..3480683) Shewanella pealeana ATCC 700345 5663242 YP_001502705.1 CDS Spea_2852 NC_009901.1 3481063 3483198 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: shn:Shewana3_1408 peptidase M3A and M3B, thimet/oligopeptidase F; peptidyl-dipeptidase Dcp 3481063..3483198 Shewanella pealeana ATCC 700345 5663243 YP_001502706.1 CDS Spea_2853 NC_009901.1 3483446 3485026 R PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_2582 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(3483446..3485026) Shewanella pealeana ATCC 700345 5663244 YP_001502707.1 CDS Spea_2854 NC_009901.1 3485522 3486445 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: slo:Shew_2583 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(3485522..3486445) Shewanella pealeana ATCC 700345 5663245 YP_001502708.1 CDS Spea_2855 NC_009901.1 3486445 3487194 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: slo:Shew_2584 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta complement(3486445..3487194) Shewanella pealeana ATCC 700345 5663246 YP_001502709.1 CDS Spea_2856 NC_009901.1 3487541 3487933 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: she:Shewmr4_1351 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 3487541..3487933 Shewanella pealeana ATCC 700345 5663247 YP_001502710.1 CDS Spea_2857 NC_009901.1 3488091 3491123 D PFAM: amidohydrolase; KEGG: slo:Shew_2586 amidohydrolase; amidohydrolase 3488091..3491123 Shewanella pealeana ATCC 700345 5663248 YP_001502711.1 CDS Spea_2858 NC_009901.1 3491123 3492526 D KEGG: slo:Shew_2587 hypothetical protein; hypothetical protein 3491123..3492526 Shewanella pealeana ATCC 700345 5663249 YP_001502712.1 CDS Spea_2859 NC_009901.1 3492653 3493036 D KEGG: shw:Sputw3181_1493 lipoprotein, putative; putative lipoprotein 3492653..3493036 Shewanella pealeana ATCC 700345 5663250 YP_001502713.1 CDS Spea_2860 NC_009901.1 3493064 3493834 D PFAM: protein of unknown function UPF0066; KEGG: sfr:Sfri_2751 protein of unknown function UPF0066; hypothetical protein 3493064..3493834 Shewanella pealeana ATCC 700345 5663251 YP_001502714.1 CDS Spea_2861 NC_009901.1 3493843 3494472 D PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO_3152 acetyltransferase, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase 3493843..3494472 Shewanella pealeana ATCC 700345 5663252 YP_001502715.1 CDS Spea_2862 NC_009901.1 3494769 3495212 D PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein 3494769..3495212 Shewanella pealeana ATCC 700345 5663253 YP_001502716.1 CDS Spea_2863 NC_009901.1 3495733 3496677 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase complement(3495733..3496677) Shewanella pealeana ATCC 700345 5663254 YP_001502717.1 CDS Spea_2864 NC_009901.1 3497086 3498798 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3497086..3498798 Shewanella pealeana ATCC 700345 5663255 YP_001502718.1 CDS Spea_2865 NC_009901.1 3499017 3500141 D PFAM: Patatin; KEGG: saz:Sama_1160 hypothetical protein; patatin 3499017..3500141 Shewanella pealeana ATCC 700345 5663256 YP_001502719.1 CDS Spea_2866 NC_009901.1 3500134 3500862 R KEGG: ppr:PBPRB1925 hypothetical protein; hypothetical protein complement(3500134..3500862) Shewanella pealeana ATCC 700345 5663257 YP_001502720.1 CDS Spea_2867 NC_009901.1 3500940 3502889 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: slo:Shew_2617 potassium efflux system protein; sodium/hydrogen exchanger complement(3500940..3502889) Shewanella pealeana ATCC 700345 5663258 YP_001502721.1 CDS Spea_2868 NC_009901.1 3503187 3504068 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbl:Sbal_1467 diguanylate cyclase; diguanylate cyclase 3503187..3504068 Shewanella pealeana ATCC 700345 5663259 YP_001502722.1 CDS Spea_2869 NC_009901.1 3504115 3505524 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: she:Shewmr4_2625 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(3504115..3505524) Shewanella pealeana ATCC 700345 5663260 YP_001502723.1 CDS dnaE NC_009901.1 3505566 3509099 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3505566..3509099) Shewanella pealeana ATCC 700345 5663261 YP_001502724.1 CDS rnhB NC_009901.1 3509209 3509820 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3509209..3509820) Shewanella pealeana ATCC 700345 5663262 YP_001502725.1 CDS lpxB NC_009901.1 3509820 3510971 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3509820..3510971) Shewanella pealeana ATCC 700345 5663263 YP_001502726.1 CDS Spea_2873 NC_009901.1 3511039 3511809 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3511039..3511809) Shewanella pealeana ATCC 700345 5663264 YP_001502727.1 CDS fabZ NC_009901.1 3511806 3512303 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3511806..3512303) Shewanella pealeana ATCC 700345 5663265 YP_001502728.1 CDS lpxD NC_009901.1 3512304 3513320 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3512304..3513320) Shewanella pealeana ATCC 700345 5663266 YP_001502729.1 CDS Spea_2876 NC_009901.1 3513325 3513822 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: slo:Shew_2626 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(3513325..3513822) Shewanella pealeana ATCC 700345 5663267 YP_001502730.1 CDS Spea_2877 NC_009901.1 3513881 3516364 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: slo:Shew_2627 surface antigen (D15); surface antigen (D15) complement(3513881..3516364) Shewanella pealeana ATCC 700345 5663268 YP_001502731.1 CDS Spea_2878 NC_009901.1 3516396 3517766 R KEGG: shm:Shewmr7_2701 putative membrane-associated zinc metalloprotease; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease complement(3516396..3517766) Shewanella pealeana ATCC 700345 5663269 YP_001502732.1 CDS Spea_2879 NC_009901.1 3517781 3518971 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3517781..3518971) Shewanella pealeana ATCC 700345 5663270 YP_001502733.1 CDS Spea_2880 NC_009901.1 3518976 3519833 R PFAM: phosphatidate cytidylyltransferase; KEGG: saz:Sama_1144 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3518976..3519833) Shewanella pealeana ATCC 700345 5663271 YP_001502734.1 CDS Spea_2881 NC_009901.1 3519854 3520654 R KEGG: sbm:Shew185_1449 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3519854..3520654) Shewanella pealeana ATCC 700345 5663272 YP_001502735.1 CDS frr NC_009901.1 3520906 3521463 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3520906..3521463) Shewanella pealeana ATCC 700345 5663273 YP_001502736.1 CDS pyrH NC_009901.1 3521496 3522224 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3521496..3522224) Shewanella pealeana ATCC 700345 5663274 YP_001502737.1 CDS tsf NC_009901.1 3522367 3523278 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3522367..3523278) Shewanella pealeana ATCC 700345 5663275 YP_001502738.1 CDS rpsB NC_009901.1 3523353 3524081 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3523353..3524081) Shewanella pealeana ATCC 700345 5663276 YP_001502739.1 CDS Spea_2886 NC_009901.1 3524389 3525189 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3524389..3525189 Shewanella pealeana ATCC 700345 5663277 YP_001502740.1 CDS Spea_2887 NC_009901.1 3525421 3527976 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3525421..3527976 Shewanella pealeana ATCC 700345 5663278 YP_001502741.1 CDS dapD NC_009901.1 3528009 3528833 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3528009..3528833 Shewanella pealeana ATCC 700345 5663279 YP_001502742.1 CDS Spea_2889 NC_009901.1 3529044 3529388 D KEGG: slo:Shew_2639 hypothetical protein; hypothetical protein 3529044..3529388 Shewanella pealeana ATCC 700345 5663280 YP_001502743.1 CDS Spea_2890 NC_009901.1 3529514 3529978 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3529514..3529978) Shewanella pealeana ATCC 700345 5663281 YP_001502744.1 CDS Spea_2891 NC_009901.1 3530330 3531184 R PFAM: pseudouridine synthase; KEGG: slo:Shew_2643 pseudouridylate synthase; pseudouridine synthase complement(3530330..3531184) Shewanella pealeana ATCC 700345 5663282 YP_001502745.1 CDS Spea_2892 NC_009901.1 3531208 3531528 R PFAM: protein of unknown function DUF446; KEGG: shm:Shewmr7_2718 protein of unknown function DUF446; hypothetical protein complement(3531208..3531528) Shewanella pealeana ATCC 700345 5663283 YP_001502746.1 CDS Spea_2893 NC_009901.1 3531650 3532663 D KEGG: shw:Sputw3181_2766 hypothetical protein; hypothetical protein 3531650..3532663 Shewanella pealeana ATCC 700345 5663284 YP_001502747.1 CDS Spea_2894 NC_009901.1 3532660 3533055 D KEGG: slo:Shew_2646 hypothetical protein; hypothetical protein 3532660..3533055 Shewanella pealeana ATCC 700345 5663285 YP_001502748.1 CDS Spea_2895 NC_009901.1 3534213 3534515 R KEGG: shn:Shewana3_2828 hypothetical protein; hypothetical protein complement(3534213..3534515) Shewanella pealeana ATCC 700345 5663286 YP_001502749.1 CDS Spea_2896 NC_009901.1 3534508 3535146 R PFAM: GCN5-related N-acetyltransferase; KEGG: sbl:Sbal_1437 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3534508..3535146) Shewanella pealeana ATCC 700345 5663287 YP_001502750.1 CDS Spea_2897 NC_009901.1 3535332 3535562 D KEGG: slo:Shew_2649 hypothetical protein; hypothetical protein 3535332..3535562 Shewanella pealeana ATCC 700345 5663288 YP_001502751.1 CDS Spea_2898 NC_009901.1 3535569 3535940 R KEGG: sbl:Sbal_1435 hypothetical protein; hypothetical protein complement(3535569..3535940) Shewanella pealeana ATCC 700345 5663289 YP_001502752.1 CDS Spea_2899 NC_009901.1 3536100 3536447 D KEGG: sfr:Sfri_1252 hypothetical protein; hypothetical protein 3536100..3536447 Shewanella pealeana ATCC 700345 5663290 YP_001502753.1 CDS Spea_2900 NC_009901.1 3536455 3537228 D KEGG: slo:Shew_2652 hypothetical protein; hypothetical protein 3536455..3537228 Shewanella pealeana ATCC 700345 5663291 YP_001502754.1 CDS Spea_2901 NC_009901.1 3537353 3537994 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3537353..3537994) Shewanella pealeana ATCC 700345 5663292 YP_001502755.1 CDS queF NC_009901.1 3538038 3538910 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3538038..3538910 Shewanella pealeana ATCC 700345 5663293 YP_001502756.1 CDS Spea_2903 NC_009901.1 3538979 3539896 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbl:Sbal_1430 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3538979..3539896) Shewanella pealeana ATCC 700345 5663294 YP_001502757.1 CDS Spea_2904 NC_009901.1 3540098 3542083 D PFAM: beta-lactamase domain protein; KEGG: sbl:Sbal_1429 beta-lactamase domain protein; beta-lactamase domain-containing protein 3540098..3542083 Shewanella pealeana ATCC 700345 5663295 YP_001502758.1 CDS Spea_2905 NC_009901.1 3542200 3543111 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbm:Shew185_1421 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(3542200..3543111) Shewanella pealeana ATCC 700345 5663296 YP_001502759.1 CDS Spea_2906 NC_009901.1 3543574 3544440 D KEGG: slo:Shew_2664 transcriptional regulator, putative; transcriptional regulator 3543574..3544440 Shewanella pealeana ATCC 700345 5663297 YP_001502760.1 CDS Spea_2907 NC_009901.1 3544440 3552491 D KEGG: slo:Shew_2665 beta-ketoacyl synthase; TIGRFAM: Polyketide-type polyunsaturated fatty acid synthase, PfaA; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase ; Acyl transferase; polyketide-type polyunsaturated fatty acid synthase PfaA 3544440..3552491 Shewanella pealeana ATCC 700345 5663298 YP_001502761.1 CDS Spea_2908 NC_009901.1 3552491 3554824 D TIGRFAM: PfaB family protein; KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; PfaB family protein 3552491..3554824 Shewanella pealeana ATCC 700345 5663299 YP_001502762.1 CDS Spea_2909 NC_009901.1 3554824 3560664 D PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; Beta-ketoacyl synthase; KEGG: slo:Shew_2667 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 3554824..3560664 Shewanella pealeana ATCC 700345 5663300 YP_001502763.1 CDS Spea_2910 NC_009901.1 3560820 3562448 D TIGRFAM: PfaD family protein; KEGG: slo:Shew_2668 2-nitropropane dioxygenase, NPD; PfaD family protein 3560820..3562448 Shewanella pealeana ATCC 700345 5663301 YP_001502764.1 CDS Spea_2912 NC_009901.1 3563264 3564886 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE4 domain protein; KEGG: sdn:Sden_1662 GGDEF domain; diguanylate cyclase 3563264..3564886 Shewanella pealeana ATCC 700345 5664798 YP_001502765.1 CDS Spea_2913 NC_009901.1 3565008 3565556 D KEGG: shw:Sputw3181_3641 hypothetical protein; hypothetical protein 3565008..3565556 Shewanella pealeana ATCC 700345 5663303 YP_001502766.1 CDS Spea_2914 NC_009901.1 3565620 3567932 R PFAM: peptidase S45 penicillin amidase; KEGG: slo:Shew_2669 penicillin amidase; penicillin amidase complement(3565620..3567932) Shewanella pealeana ATCC 700345 5663304 YP_001502767.1 CDS Spea_2915 NC_009901.1 3568168 3568419 D KEGG: sfr:Sfri_3228 hypothetical protein; hypothetical protein 3568168..3568419 Shewanella pealeana ATCC 700345 5663305 YP_001502768.1 CDS Spea_2916 NC_009901.1 3568994 3569236 D KEGG: ppr:PBPRB0752 hypothetical protein; hypothetical protein 3568994..3569236 Shewanella pealeana ATCC 700345 5663306 YP_001502769.1 CDS Spea_2917 NC_009901.1 3569294 3570613 D KEGG: abo:ABO_2640 dGTPase; TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase HD region; putative deoxyguanosinetriphosphate triphosphohydrolase 3569294..3570613 Shewanella pealeana ATCC 700345 5663307 YP_001502770.1 CDS Spea_2918 NC_009901.1 3570870 3571049 D KEGG: sfr:Sfri_0896 hypothetical protein; hypothetical protein 3570870..3571049 Shewanella pealeana ATCC 700345 5663308 YP_001502771.1 CDS Spea_2919 NC_009901.1 3571046 3571387 R KEGG: sdn:Sden_2168 integrase, catalytic region; integrase, catalytic region complement(3571046..3571387) Shewanella pealeana ATCC 700345 5663309 YP_001502772.1 CDS Spea_2920 NC_009901.1 3571949 3572926 D KEGG: ilo:IL1590 hypothetical protein; hypothetical protein 3571949..3572926 Shewanella pealeana ATCC 700345 5663310 YP_001502773.1 CDS Spea_2921 NC_009901.1 3573607 3574956 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mxa:MXAN_4597 putative methyltransferase; radical SAM domain-containing protein 3573607..3574956 Shewanella pealeana ATCC 700345 5663311 YP_001502774.1 CDS Spea_2922 NC_009901.1 3575755 3576732 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(3575755..3576732) Shewanella pealeana ATCC 700345 5663312 YP_001502775.1 CDS Spea_2923 NC_009901.1 3577269 3577559 D hypothetical protein 3577269..3577559 Shewanella pealeana ATCC 700345 5663313 YP_001502776.1 CDS Spea_2924 NC_009901.1 3577668 3578171 D KEGG: cps:CPS_0689 hypothetical protein; hypothetical protein 3577668..3578171 Shewanella pealeana ATCC 700345 5663314 YP_001502777.1 CDS Spea_2925 NC_009901.1 3578230 3578667 D KEGG: hch:HCH_03398 hypothetical protein; hypothetical protein 3578230..3578667 Shewanella pealeana ATCC 700345 5663315 YP_001502778.1 CDS Spea_2926 NC_009901.1 3579604 3581010 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: vfi:VF1790 ATP-dependent RNA helicase; DEAD/DEAH box helicase 3579604..3581010 Shewanella pealeana ATCC 700345 5663316 YP_001502779.1 CDS Spea_2927 NC_009901.1 3581259 3582476 D KEGG: sfr:Sfri_0530 hypothetical protein; hypothetical protein 3581259..3582476 Shewanella pealeana ATCC 700345 5663317 YP_001502780.1 CDS Spea_2928 NC_009901.1 3582553 3583878 R KEGG: sfr:Sfri_3605 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3582553..3583878) Shewanella pealeana ATCC 700345 5663318 YP_001502781.1 CDS Spea_2929 NC_009901.1 3584266 3586533 D TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: son:SO_0719 TonB-dependent receptor, putative; TonB-dependent heme/hemoglobin receptor family protein 3584266..3586533 Shewanella pealeana ATCC 700345 5663319 YP_001502782.1 CDS Spea_2930 NC_009901.1 3586618 3589050 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shn:Shewana3_2944 TonB-dependent receptor; TonB-dependent receptor plug complement(3586618..3589050) Shewanella pealeana ATCC 700345 5663320 YP_001502783.1 CDS Spea_2931 NC_009901.1 3589524 3590465 R KEGG: slo:Shew_2693 hypothetical protein; hypothetical protein complement(3589524..3590465) Shewanella pealeana ATCC 700345 5663321 YP_001502784.1 CDS Spea_2932 NC_009901.1 3591482 3592519 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cps:CPS_0377 ISCps1, transposase; transposase IS116/IS110/IS902 family protein complement(3591482..3592519) Shewanella pealeana ATCC 700345 5663322 YP_001502785.1 CDS Spea_2933 NC_009901.1 3593759 3594796 D PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 3593759..3594796 Shewanella pealeana ATCC 700345 5663323 YP_001502786.1 CDS Spea_2934 NC_009901.1 3595090 3595416 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: sfr:Sfri_1133 propeptide, PepSY amd peptidase M4; peptidase 3595090..3595416 Shewanella pealeana ATCC 700345 5663324 YP_001502787.1 CDS Spea_2935 NC_009901.1 3595533 3596222 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_4647 DNA-binding response regulator; two component transcriptional regulator 3595533..3596222 Shewanella pealeana ATCC 700345 5663325 YP_001502788.1 CDS Spea_2936 NC_009901.1 3596206 3597759 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pin:Ping_0281 sensor histidine kinase with ATPase domain; histidine kinase 3596206..3597759 Shewanella pealeana ATCC 700345 5663326 YP_001502789.1 CDS Spea_2937 NC_009901.1 3597869 3599269 D KEGG: sbm:Shew185_4214 hypothetical protein; hypothetical protein 3597869..3599269 Shewanella pealeana ATCC 700345 5663327 YP_001502790.1 CDS Spea_2938 NC_009901.1 3599380 3600759 R SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype; KEGG: shm:Shewmr7_0539 serine/threonine protein kinase; serine/threonine protein kinase complement(3599380..3600759) Shewanella pealeana ATCC 700345 5663328 YP_001502791.1 CDS Spea_2939 NC_009901.1 3600847 3601587 R PFAM: protein of unknown function DUF599; KEGG: sbm:Shew185_0877 protein of unknown function DUF599; hypothetical protein complement(3600847..3601587) Shewanella pealeana ATCC 700345 5663329 YP_001502792.1 CDS Spea_2940 NC_009901.1 3601682 3601843 R KEGG: slo:Shew_2719 hypothetical protein; hypothetical protein complement(3601682..3601843) Shewanella pealeana ATCC 700345 5663330 YP_001502793.1 CDS Spea_2941 NC_009901.1 3602067 3602294 D KEGG: shm:Shewmr7_2754 hypothetical protein; hypothetical protein 3602067..3602294 Shewanella pealeana ATCC 700345 5663331 YP_001502794.1 CDS Spea_2942 NC_009901.1 3602391 3603161 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0630 conserved hypothetical protein 245; hypothetical protein complement(3602391..3603161) Shewanella pealeana ATCC 700345 5663332 YP_001502795.1 CDS Spea_2943 NC_009901.1 3603368 3604591 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3603368..3604591 Shewanella pealeana ATCC 700345 5663333 YP_001502796.1 CDS Spea_2944 NC_009901.1 3604973 3605695 D KEGG: sfr:Sfri_3204 nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase 3604973..3605695 Shewanella pealeana ATCC 700345 5663334 YP_001502797.1 CDS Spea_2945 NC_009901.1 3605789 3606526 D PFAM: protein of unknown function DUF633; KEGG: sbm:Shew185_2328 hypothetical protein; hypothetical protein 3605789..3606526 Shewanella pealeana ATCC 700345 5663335 YP_001502798.1 CDS Spea_2946 NC_009901.1 3606579 3607121 D PFAM: NUDIX hydrolase; KEGG: slo:Shew_2723 NUDIX hydrolase; NUDIX hydrolase 3606579..3607121 Shewanella pealeana ATCC 700345 5663336 YP_001502799.1 CDS Spea_2947 NC_009901.1 3607245 3607619 R KEGG: sde:Sde_0094 hypothetical protein; hypothetical protein complement(3607245..3607619) Shewanella pealeana ATCC 700345 5663337 YP_001502800.1 CDS Spea_2948 NC_009901.1 3607988 3609217 R PFAM: sodium/glutamate symporter; KEGG: psa:PST_0687 sodium-glutamate symporter; sodium/glutamate symporter complement(3607988..3609217) Shewanella pealeana ATCC 700345 5663338 YP_001502801.1 CDS Spea_2949 NC_009901.1 3609712 3610980 D PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3503 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3609712..3610980 Shewanella pealeana ATCC 700345 5663339 YP_001502802.1 CDS Spea_2950 NC_009901.1 3611087 3612001 R PFAM: Indigoidine synthase A family protein; KEGG: slo:Shew_2724 indigoidine synthase A family protein; indigoidine synthase A family protein complement(3611087..3612001) Shewanella pealeana ATCC 700345 5663340 YP_001502803.1 CDS Spea_2951 NC_009901.1 3611995 3613086 R PFAM: PfkB domain protein; Helix-turn-helix type 11 domain protein; KEGG: slo:Shew_2725 PfkB domain protein; ribokinase-like domain-containing protein complement(3611995..3613086) Shewanella pealeana ATCC 700345 5663341 YP_001502804.1 CDS Spea_2952 NC_009901.1 3613640 3615379 R TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: vfi:VF1065 integral membrane protein with TrkA domains; YidE/YbjL protein complement(3613640..3615379) Shewanella pealeana ATCC 700345 5663342 YP_001502805.1 CDS Spea_2953 NC_009901.1 3615440 3616834 R TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: vfi:VF1064 glutamate decarboxylase; glutamate decarboxylase complement(3615440..3616834) Shewanella pealeana ATCC 700345 5663343 YP_001502806.1 CDS Spea_2954 NC_009901.1 3617318 3617656 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sdn:Sden_2795 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3617318..3617656 Shewanella pealeana ATCC 700345 5663344 YP_001502807.1 CDS Spea_2955 NC_009901.1 3617737 3617943 R KEGG: cps:CPS_3943 hypothetical protein; hypothetical protein complement(3617737..3617943) Shewanella pealeana ATCC 700345 5663345 YP_001502808.1 CDS Spea_2956 NC_009901.1 3618060 3618911 R KEGG: pat:Patl_1499 hypothetical protein; hypothetical protein complement(3618060..3618911) Shewanella pealeana ATCC 700345 5663346 YP_001502809.1 CDS Spea_2957 NC_009901.1 3619205 3621316 D SMART: Dystroglycan-type cadherin domain protein; KEGG: vha:VIBHAR_00499 hypothetical protein; dystroglycan-type cadherin domain-containing protein 3619205..3621316 Shewanella pealeana ATCC 700345 5663347 YP_001502810.1 CDS Spea_2958 NC_009901.1 3621439 3621894 R PFAM: protein of unknown function DUF188; KEGG: slo:Shew_2726 protein of unknown function DUF188; hypothetical protein complement(3621439..3621894) Shewanella pealeana ATCC 700345 5663348 YP_001502811.1 CDS Spea_2959 NC_009901.1 3622066 3622743 D PFAM: conserved hypothetical protein; KEGG: sbl:Sbal_1396 hypothetical protein; hypothetical protein 3622066..3622743 Shewanella pealeana ATCC 700345 5663349 YP_001502812.1 CDS Spea_2960 NC_009901.1 3622860 3624209 D PFAM: Fmu (Sun) domain protein; KEGG: sfr:Sfri_1209 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 3622860..3624209 Shewanella pealeana ATCC 700345 5663350 YP_001502813.1 CDS Spea_2961 NC_009901.1 3624404 3626101 R PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: shm:Shewmr7_2768 diguanylate cyclase; diguanylate cyclase complement(3624404..3626101) Shewanella pealeana ATCC 700345 5663351 YP_001502814.1 CDS Spea_2962 NC_009901.1 3626414 3626953 R PFAM: YfaZ family protein; KEGG: slo:Shew_2740 YfaZ family protein; hypothetical protein complement(3626414..3626953) Shewanella pealeana ATCC 700345 5663352 YP_001502815.1 CDS Spea_2963 NC_009901.1 3627371 3628447 D KEGG: slo:Shew_3409 putative lipoprotein; putative lipoprotein 3627371..3628447 Shewanella pealeana ATCC 700345 5663353 YP_001502816.1 CDS Spea_2964 NC_009901.1 3628609 3629091 D PFAM: glutathione peroxidase; KEGG: sfr:Sfri_2764 glutathione peroxidase; glutathione peroxidase 3628609..3629091 Shewanella pealeana ATCC 700345 5663354 YP_001502817.1 CDS Spea_2965 NC_009901.1 3630814 3632607 R PFAM: peptidase M61 domain protein; Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: slo:Shew_2742 peptidase M1, membrane alanine aminopeptidase; peptidase M1 membrane alanine aminopeptidase complement(3630814..3632607) Shewanella pealeana ATCC 700345 5663355 YP_001502818.1 CDS Spea_2966 NC_009901.1 3632720 3633634 D PFAM: Peptidase M9A collagenase domain protein; KEGG: slo:Shew_2743 microbial collagenase; collagenase 3632720..3633634 Shewanella pealeana ATCC 700345 5663356 YP_001502819.1 CDS Spea_2967 NC_009901.1 3633722 3634693 R TIGRFAM: phosphate binding protein; KEGG: slo:Shew_2747 phosphate binding protein; phosphate-binding protein complement(3633722..3634693) Shewanella pealeana ATCC 700345 5663357 YP_001502820.1 CDS Spea_2968 NC_009901.1 3634896 3636215 R KEGG: son:SO_1559 phosphate regulon sensor protein PhoR; TIGRFAM: Phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3634896..3636215) Shewanella pealeana ATCC 700345 5663358 YP_001502821.1 CDS Spea_2969 NC_009901.1 3636287 3636976 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_2749 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(3636287..3636976) Shewanella pealeana ATCC 700345 5663359 YP_001502822.1 CDS Spea_2970 NC_009901.1 3637436 3638386 R PFAM: porin Gram-negative type; KEGG: slo:Shew_2750 porin, gram-negative type; porin complement(3637436..3638386) Shewanella pealeana ATCC 700345 5663360 YP_001502823.1 CDS rdgC NC_009901.1 3638676 3639587 D Required for efficient pilin antigenic variation; recombination associated protein 3638676..3639587 Shewanella pealeana ATCC 700345 5663361 YP_001502824.1 CDS Spea_2972 NC_009901.1 3639647 3641452 R PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: shn:Shewana3_2882 peptidase M61 domain protein; peptidase M61 domain-containing protein complement(3639647..3641452) Shewanella pealeana ATCC 700345 5663362 YP_001502825.1 CDS Spea_2973 NC_009901.1 3641580 3643751 D SMART: Tetratricopeptide domain protein; KEGG: son:SO_1552 TPR domain protein; tetratricopeptide domain-containing protein 3641580..3643751 Shewanella pealeana ATCC 700345 5663363 YP_001502826.1 CDS Spea_2974 NC_009901.1 3643872 3645428 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2782 diguanylate cyclase; diguanylate cyclase 3643872..3645428 Shewanella pealeana ATCC 700345 5663364 YP_001502827.1 CDS Spea_2975 NC_009901.1 3645507 3646859 D PFAM: conserved hypothetical protein; KEGG: sdn:Sden_2557 conserved hypothetical protein 730; hypothetical protein 3645507..3646859 Shewanella pealeana ATCC 700345 5663365 YP_001502828.1 CDS xni NC_009901.1 3647092 3647862 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3647092..3647862 Shewanella pealeana ATCC 700345 5663366 YP_001502829.1 CDS Spea_2977 NC_009901.1 3647968 3648354 D KEGG: slo:Shew_2757 hypothetical protein; hypothetical protein 3647968..3648354 Shewanella pealeana ATCC 700345 5663367 YP_001502830.1 CDS Spea_2978 NC_009901.1 3648853 3649491 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: cte:CT0481 multiple antibiotic resistance protein; multiple antibiotic resistance (MarC)-like protein complement(3648853..3649491) Shewanella pealeana ATCC 700345 5663368 YP_001502831.1 CDS Spea_2979 NC_009901.1 3649611 3652406 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2719 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(3649611..3652406) Shewanella pealeana ATCC 700345 5663369 YP_001502832.1 CDS Spea_2980 NC_009901.1 3652644 3653654 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3652644..3653654 Shewanella pealeana ATCC 700345 5663370 YP_001502833.1 CDS Spea_2981 NC_009901.1 3653750 3654832 R KEGG: slo:Shew_2761 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(3653750..3654832) Shewanella pealeana ATCC 700345 5663371 YP_001502834.1 CDS Spea_2982 NC_009901.1 3655074 3655460 R PFAM: protein of unknown function DUF423; KEGG: slo:Shew_2762 protein of unknown function DUF423; hypothetical protein complement(3655074..3655460) Shewanella pealeana ATCC 700345 5663372 YP_001502835.1 CDS Spea_2983 NC_009901.1 3655537 3656271 R KEGG: slo:Shew_2763 dienelactone hydrolase; alpha/beta hydrolase complement(3655537..3656271) Shewanella pealeana ATCC 700345 5663373 YP_001502836.1 CDS Spea_2984 NC_009901.1 3656252 3657163 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3656252..3657163) Shewanella pealeana ATCC 700345 5663374 YP_001502837.1 CDS Spea_2985 NC_009901.1 3657345 3657578 D KEGG: slo:Shew_2765 hypothetical protein; hypothetical protein 3657345..3657578 Shewanella pealeana ATCC 700345 5663375 YP_001502838.1 CDS Spea_2986 NC_009901.1 3657742 3659196 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3657742..3659196) Shewanella pealeana ATCC 700345 5663376 YP_001502839.1 CDS motB NC_009901.1 3659397 3660365 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(3659397..3660365) Shewanella pealeana ATCC 700345 5663377 YP_001502840.1 CDS Spea_2988 NC_009901.1 3660370 3661137 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(3660370..3661137) Shewanella pealeana ATCC 700345 5663378 YP_001502841.1 CDS Spea_2989 NC_009901.1 3661548 3661796 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sbl:Sbal_1359 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 3661548..3661796 Shewanella pealeana ATCC 700345 5663379 YP_001502842.1 CDS Spea_2990 NC_009901.1 3661797 3662678 D PFAM: Polyprenyl synthetase; KEGG: slo:Shew_2770 polyprenyl synthetase; polyprenyl synthetase 3661797..3662678 Shewanella pealeana ATCC 700345 5663380 YP_001502843.1 CDS Spea_2991 NC_009901.1 3662701 3664566 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3662701..3664566 Shewanella pealeana ATCC 700345 5663381 YP_001502844.1 CDS Spea_2992 NC_009901.1 3664697 3665299 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3664697..3665299) Shewanella pealeana ATCC 700345 5663382 YP_001502845.1 CDS ppnK NC_009901.1 3665400 3666278 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3665400..3666278 Shewanella pealeana ATCC 700345 5663383 YP_001502846.1 CDS Spea_2994 NC_009901.1 3666988 3668631 D PFAM: L-lactate permease; KEGG: slo:Shew_3135 L-lactate permease; L-lactate permease 3666988..3668631 Shewanella pealeana ATCC 700345 5663384 YP_001502847.1 CDS Spea_2995 NC_009901.1 3668740 3671559 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: shn:Shewana3_2905 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3668740..3671559 Shewanella pealeana ATCC 700345 5663385 YP_001502848.1 CDS Spea_2996 NC_009901.1 3671949 3672692 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: slo:Shew_3004 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 3671949..3672692 Shewanella pealeana ATCC 700345 5663386 YP_001502849.1 CDS Spea_2997 NC_009901.1 3672701 3674074 D PFAM: protein of unknown function DUF162; KEGG: slo:Shew_3005 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hypothetical protein 3672701..3674074 Shewanella pealeana ATCC 700345 5663387 YP_001502850.1 CDS Spea_2998 NC_009901.1 3674079 3674648 D PFAM: protein of unknown function DUF162; KEGG: shm:Shewmr7_2816 protein of unknown function DUF162; hypothetical protein 3674079..3674648 Shewanella pealeana ATCC 700345 5663388 YP_001502851.1 CDS Spea_2999 NC_009901.1 3674780 3675970 R TIGRFAM: TonB family protein; KEGG: son:SO_4043 TonB domain protein; TonB family protein complement(3674780..3675970) Shewanella pealeana ATCC 700345 5663389 YP_001502852.1 CDS Spea_3000 NC_009901.1 3676168 3677544 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO_1506 MATE efflux family protein; MATE efflux family protein complement(3676168..3677544) Shewanella pealeana ATCC 700345 5663390 YP_001502853.1 CDS Spea_3001 NC_009901.1 3677702 3678838 R PFAM: cobalamin synthesis protein P47K; KEGG: spc:Sputcn32_1255 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(3677702..3678838) Shewanella pealeana ATCC 700345 5663391 YP_001502854.1 CDS Spea_3002 NC_009901.1 3678953 3679294 R KEGG: gsu:GSU0757 lipoprotein, putative; hypothetical protein complement(3678953..3679294) Shewanella pealeana ATCC 700345 5663392 YP_001502855.1 CDS Spea_3003 NC_009901.1 3679577 3680995 D KEGG: vpa:VPA0754 hypothetical protein; hypothetical protein 3679577..3680995 Shewanella pealeana ATCC 700345 5663393 YP_001502856.1 CDS Spea_3004 NC_009901.1 3681118 3681465 R KEGG: cps:CPS_2486 hypothetical protein; hypothetical protein complement(3681118..3681465) Shewanella pealeana ATCC 700345 5663394 YP_001502857.1 CDS Spea_3005 NC_009901.1 3681586 3682923 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: shw:Sputw3181_2850 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3681586..3682923) Shewanella pealeana ATCC 700345 5663395 YP_001502858.1 CDS Spea_3006 NC_009901.1 3683235 3686429 R KEGG: shn:Shewana3_2929 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3683235..3686429) Shewanella pealeana ATCC 700345 5663396 YP_001502859.1 CDS Spea_3007 NC_009901.1 3686870 3687310 R PFAM: OsmC family protein; KEGG: shm:Shewmr7_1143 OsmC family protein; OsmC family protein complement(3686870..3687310) Shewanella pealeana ATCC 700345 5663397 YP_001502860.1 CDS Spea_3008 NC_009901.1 3687751 3688227 D PFAM: thioesterase superfamily protein; KEGG: sbl:Sbal_3195 thioesterase superfamily protein; thioesterase superfamily protein 3687751..3688227 Shewanella pealeana ATCC 700345 5663398 YP_001502861.1 CDS Spea_3009 NC_009901.1 3688340 3689818 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spc:Sputcn32_2800 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(3688340..3689818) Shewanella pealeana ATCC 700345 5663399 YP_001502862.1 CDS Spea_3010 NC_009901.1 3689943 3690785 R PFAM: Metal-dependent hydrolase HDOD; KEGG: saz:Sama_1005 putative signal transduction protein; putative signal transduction protein complement(3689943..3690785) Shewanella pealeana ATCC 700345 5663400 YP_001502863.1 CDS Spea_3011 NC_009901.1 3691074 3692441 D PFAM: peptidase U32; KEGG: sfr:Sfri_1022 peptidase U32; peptidase U32 3691074..3692441 Shewanella pealeana ATCC 700345 5663401 YP_001502864.1 CDS Spea_3012 NC_009901.1 3692546 3693790 R PFAM: Carbohydrate-selective porin OprB; KEGG: cps:CPS_0267 hypothetical protein; carbohydrate-selective porin OprB complement(3692546..3693790) Shewanella pealeana ATCC 700345 5663402 YP_001502865.1 CDS Spea_3013 NC_009901.1 3693835 3694554 R KEGG: vha:VIBHAR_05705 hypothetical protein; hypothetical protein complement(3693835..3694554) Shewanella pealeana ATCC 700345 5663403 YP_001502866.1 CDS Spea_3014 NC_009901.1 3694964 3696343 R PFAM: amidohydrolase; KEGG: slo:Shew_0983 amidohydrolase; amidohydrolase complement(3694964..3696343) Shewanella pealeana ATCC 700345 5663404 YP_001502867.1 CDS Spea_3015 NC_009901.1 3696561 3697571 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB0224 hypothetical protein; AraC family transcriptional regulator complement(3696561..3697571) Shewanella pealeana ATCC 700345 5663405 YP_001502868.1 CDS Spea_3016 NC_009901.1 3697843 3698100 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3697843..3698100 Shewanella pealeana ATCC 700345 5663406 YP_001502869.1 CDS Spea_3017 NC_009901.1 3698270 3699988 D PFAM: pseudouridine synthase; KEGG: slo:Shew_2529 pseudouridine synthase; pseudouridine synthase 3698270..3699988 Shewanella pealeana ATCC 700345 5663407 YP_001502870.1 CDS Spea_3018 NC_009901.1 3700133 3700645 R PFAM: Sterol-binding domain protein; KEGG: shw:Sputw3181_1208 sterol-binding domain protein; sterol-binding domain-containing protein complement(3700133..3700645) Shewanella pealeana ATCC 700345 5663408 YP_001502871.1 CDS Spea_3019 NC_009901.1 3700778 3701779 D PFAM: peptidase U32; KEGG: slo:Shew_2787 peptidase U32; peptidase U32 3700778..3701779 Shewanella pealeana ATCC 700345 5663409 YP_001502872.1 CDS Spea_3020 NC_009901.1 3701803 3702660 D PFAM: peptidase U32; KEGG: slo:Shew_2788 peptidase U32; peptidase U32 3701803..3702660 Shewanella pealeana ATCC 700345 5663410 YP_001502873.1 CDS Spea_3021 NC_009901.1 3703107 3704237 D TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfr:Sfri_3427 alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase 3703107..3704237 Shewanella pealeana ATCC 700345 5663411 YP_001502874.1 CDS Spea_3022 NC_009901.1 3704358 3705062 R KEGG: shn:Shewana3_1063 hypothetical protein; hypothetical protein complement(3704358..3705062) Shewanella pealeana ATCC 700345 5663412 YP_001502875.1 CDS Spea_3023 NC_009901.1 3705427 3706971 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: shm:Shewmr7_2891 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; Pas/Pac sensor containing methyl-accepting chemotaxis sensory transducer 3705427..3706971 Shewanella pealeana ATCC 700345 5663413 YP_001502876.1 CDS Spea_3024 NC_009901.1 3707330 3708685 D PFAM: nucleoside recognition domain protein; KEGG: slo:Shew_2790 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 3707330..3708685 Shewanella pealeana ATCC 700345 5663414 YP_001502877.1 CDS Spea_3025 NC_009901.1 3708844 3709725 D PFAM: metallophosphoesterase; KEGG: sfr:Sfri_2266 metallophosphoesterase; metallophosphoesterase 3708844..3709725 Shewanella pealeana ATCC 700345 5663415 YP_001502878.1 CDS Spea_3026 NC_009901.1 3709871 3711229 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: slo:Shew_2795 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(3709871..3711229) Shewanella pealeana ATCC 700345 5663416 YP_001502879.1 CDS Spea_3027 NC_009901.1 3711580 3712824 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbl:Sbal_1252 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3711580..3712824) Shewanella pealeana ATCC 700345 5663417 YP_001502880.1 CDS Spea_3028 NC_009901.1 3712934 3713932 R KEGG: hch:HCH_00820 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein complement(3712934..3713932) Shewanella pealeana ATCC 700345 5663418 YP_001502881.1 CDS Spea_3029 NC_009901.1 3714085 3715350 D KEGG: vfi:VF2363 glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase 3714085..3715350 Shewanella pealeana ATCC 700345 5663419 YP_001502882.1 CDS Spea_3030 NC_009901.1 3715510 3716079 D KEGG: vpa:VPA0078 hypothetical protein; hypothetical protein 3715510..3716079 Shewanella pealeana ATCC 700345 5663420 YP_001502883.1 CDS Spea_3031 NC_009901.1 3716239 3716646 D PFAM: type IV pilus assembly PilZ; KEGG: shw:Sputw3181_1198 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3716239..3716646 Shewanella pealeana ATCC 700345 5663421 YP_001502884.1 CDS Spea_3032 NC_009901.1 3716761 3718134 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3716761..3718134) Shewanella pealeana ATCC 700345 5663422 YP_001502885.1 CDS Spea_3033 NC_009901.1 3718285 3720702 D PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_2808 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3718285..3720702 Shewanella pealeana ATCC 700345 5663423 YP_001502886.1 CDS Spea_3034 NC_009901.1 3720794 3721255 R KEGG: vco:VC0395_A1179 hypothetical protein; hypothetical protein complement(3720794..3721255) Shewanella pealeana ATCC 700345 5663424 YP_001502887.1 CDS Spea_3035 NC_009901.1 3721676 3722407 D PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0471 DedA family protein; hypothetical protein 3721676..3722407 Shewanella pealeana ATCC 700345 5663425 YP_001502888.1 CDS Spea_3036 NC_009901.1 3722797 3724632 R PFAM: sulfatase; KEGG: shw:Sputw3181_0059 sulfatase; sulfatase complement(3722797..3724632) Shewanella pealeana ATCC 700345 5663426 YP_001502889.1 CDS Spea_3037 NC_009901.1 3724874 3725821 R PFAM: Polysulphide reductase NrfD; KEGG: shm:Shewmr7_0509 polysulphide reductase, NrfD; polysulfide reductase NrfD complement(3724874..3725821) Shewanella pealeana ATCC 700345 5663427 YP_001502890.1 CDS Spea_3038 NC_009901.1 3725818 3726390 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shn:Shewana3_3618 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3725818..3726390) Shewanella pealeana ATCC 700345 5663428 YP_001502891.1 CDS Spea_3039 NC_009901.1 3726403 3728679 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbm:Shew185_0531 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(3726403..3728679) Shewanella pealeana ATCC 700345 5663429 YP_001502892.1 CDS Spea_3040 NC_009901.1 3729023 3730807 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sbl:Sbal_3861 histidine kinase; histidine kinase complement(3729023..3730807) Shewanella pealeana ATCC 700345 5663430 YP_001502893.1 CDS Spea_3041 NC_009901.1 3731040 3731651 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: shw:Sputw3181_3638 response regulator receiver protein; two component LuxR family transcriptional regulator 3731040..3731651 Shewanella pealeana ATCC 700345 5663431 YP_001502894.1 CDS Spea_3042 NC_009901.1 3731722 3732630 R KEGG: slo:Shew_2809 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3731722..3732630) Shewanella pealeana ATCC 700345 5663432 YP_001502895.1 CDS Spea_3043 NC_009901.1 3732940 3733947 R KEGG: sbm:Shew185_3223 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB complement(3732940..3733947) Shewanella pealeana ATCC 700345 5663433 YP_001502896.1 CDS Spea_3044 NC_009901.1 3734026 3735138 D KEGG: she:Shewmr4_1041 membrane protein; membrane protein 3734026..3735138 Shewanella pealeana ATCC 700345 5663434 YP_001502897.1 CDS deoD NC_009901.1 3735219 3735929 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(3735219..3735929) Shewanella pealeana ATCC 700345 5663435 YP_001502898.1 CDS Spea_3046 NC_009901.1 3736028 3737245 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(3736028..3737245) Shewanella pealeana ATCC 700345 5663436 YP_001502899.1 CDS deoA NC_009901.1 3737259 3738590 R Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase complement(3737259..3738590) Shewanella pealeana ATCC 700345 5663437 YP_001502900.1 CDS Spea_3048 NC_009901.1 3738752 3739525 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(3738752..3739525) Shewanella pealeana ATCC 700345 5663438 YP_001502901.1 CDS Spea_3049 NC_009901.1 3740090 3740953 R PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: son:SO_1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein Tsx complement(3740090..3740953) Shewanella pealeana ATCC 700345 5663439 YP_001502902.1 CDS Spea_3050 NC_009901.1 3741294 3742553 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sbm:Shew185_3232 nucleoside transporter; nucleoside transporter complement(3741294..3742553) Shewanella pealeana ATCC 700345 5663440 YP_001502903.1 CDS Spea_3051 NC_009901.1 3742733 3743506 R PFAM: TatD-related deoxyribonuclease; KEGG: saz:Sama_0970 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(3742733..3743506) Shewanella pealeana ATCC 700345 5663441 YP_001502904.1 CDS Spea_3052 NC_009901.1 3743532 3743792 R KEGG: sbl:Sbal_3231 hypothetical protein; hypothetical protein complement(3743532..3743792) Shewanella pealeana ATCC 700345 5663442 YP_001502905.1 CDS prfC NC_009901.1 3743934 3745514 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(3743934..3745514) Shewanella pealeana ATCC 700345 5663443 YP_001502906.1 CDS Spea_3054 NC_009901.1 3745676 3746569 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3745676..3746569) Shewanella pealeana ATCC 700345 5663444 YP_001502907.1 CDS Spea_3055 NC_009901.1 3746741 3748855 R KEGG: slo:Shew_2822 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3746741..3748855) Shewanella pealeana ATCC 700345 5663445 YP_001502908.1 CDS Spea_3056 NC_009901.1 3749052 3751091 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sbm:Shew185_3276 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3749052..3751091 Shewanella pealeana ATCC 700345 5663446 YP_001502909.1 CDS rpsO NC_009901.1 3751292 3751561 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3751292..3751561) Shewanella pealeana ATCC 700345 5663447 YP_001502910.1 CDS truB NC_009901.1 3751683 3752630 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3751683..3752630) Shewanella pealeana ATCC 700345 5663448 YP_001502911.1 CDS rbfA NC_009901.1 3752630 3753058 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3752630..3753058) Shewanella pealeana ATCC 700345 5663449 YP_001502912.1 CDS infB NC_009901.1 3753125 3755815 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3753125..3755815) Shewanella pealeana ATCC 700345 5663450 YP_001502913.1 CDS nusA NC_009901.1 3755843 3757342 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3755843..3757342) Shewanella pealeana ATCC 700345 5663451 YP_001502914.1 CDS Spea_3062 NC_009901.1 3757370 3757825 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3757370..3757825) Shewanella pealeana ATCC 700345 5663452 YP_001502915.1 CDS secG NC_009901.1 3758364 3758699 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: slo:Shew_2830 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(3758364..3758699) Shewanella pealeana ATCC 700345 5664800 YP_001502916.1 CDS Spea_3064 NC_009901.1 3758701 3759483 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3758701..3759483) Shewanella pealeana ATCC 700345 5663454 YP_001502917.1 CDS glmM NC_009901.1 3759680 3761017 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3759680..3761017) Shewanella pealeana ATCC 700345 5663455 YP_001502918.1 CDS Spea_3066 NC_009901.1 3761117 3761959 R KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(3761117..3761959) Shewanella pealeana ATCC 700345 5663456 YP_001502919.1 CDS Spea_3067 NC_009901.1 3762018 3763970 R KEGG: slo:Shew_2834 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(3762018..3763970) Shewanella pealeana ATCC 700345 5663457 YP_001502920.1 CDS rrmJ NC_009901.1 3764031 3764660 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3764031..3764660) Shewanella pealeana ATCC 700345 5663458 YP_001502921.1 CDS Spea_3069 NC_009901.1 3764754 3765053 D PFAM: protein of unknown function UPF0044; KEGG: slo:Shew_2836 protein of unknown function UPF0044; hypothetical protein 3764754..3765053 Shewanella pealeana ATCC 700345 5663459 YP_001502922.1 CDS Spea_3070 NC_009901.1 3765146 3766054 R TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sbm:Shew185_3291 protein-export membrane protein SecF; protein-export membrane protein SecF complement(3765146..3766054) Shewanella pealeana ATCC 700345 5663460 YP_001502923.1 CDS secD NC_009901.1 3766056 3767870 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3766056..3767870) Shewanella pealeana ATCC 700345 5663461 YP_001502924.1 CDS Spea_3072 NC_009901.1 3768172 3768672 R KEGG: sfr:Sfri_0978 hypothetical protein; hypothetical protein complement(3768172..3768672) Shewanella pealeana ATCC 700345 5663462 YP_001502925.1 CDS Spea_3073 NC_009901.1 3768827 3769303 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shn:Shewana3_1017 transcription elongation factor GreA; transcription elongation factor GreA complement(3768827..3769303) Shewanella pealeana ATCC 700345 5663463 YP_001502926.1 CDS carB NC_009901.1 3769661 3772882 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(3769661..3772882) Shewanella pealeana ATCC 700345 5663464 YP_001502927.1 CDS Spea_3075 NC_009901.1 3772911 3774056 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(3772911..3774056) Shewanella pealeana ATCC 700345 5663465 YP_001502928.1 CDS Spea_3076 NC_009901.1 3774250 3775074 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(3774250..3775074) Shewanella pealeana ATCC 700345 5663466 YP_001502929.1 CDS Spea_3077 NC_009901.1 3775138 3775755 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: slo:Shew_2841 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(3775138..3775755) Shewanella pealeana ATCC 700345 5663467 YP_001502930.1 CDS Spea_3078 NC_009901.1 3775838 3776638 R PFAM: peptidase M48 Ste24p; KEGG: son:SO_1137 hypothetical protein; peptidase M48 Ste24p complement(3775838..3776638) Shewanella pealeana ATCC 700345 5663468 YP_001502931.1 CDS Spea_3079 NC_009901.1 3776761 3777891 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(3776761..3777891) Shewanella pealeana ATCC 700345 5663469 YP_001502932.1 CDS dnaK NC_009901.1 3777981 3779897 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(3777981..3779897) Shewanella pealeana ATCC 700345 5663470 YP_001502933.1 CDS Spea_3081 NC_009901.1 3780204 3781118 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: slo:Shew_2845 protein of unknown function DUF6, transmembrane; hypothetical protein 3780204..3781118 Shewanella pealeana ATCC 700345 5663471 YP_001502934.1 CDS Spea_3082 NC_009901.1 3781169 3781897 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit complement(3781169..3781897) Shewanella pealeana ATCC 700345 5663472 YP_001502935.1 CDS Spea_3083 NC_009901.1 3782014 3782397 R KEGG: sfr:Sfri_3563 transposase; transposase complement(3782014..3782397) Shewanella pealeana ATCC 700345 5663473 YP_001502936.1 CDS proA NC_009901.1 3783022 3784287 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3783022..3784287) Shewanella pealeana ATCC 700345 5663474 YP_001502937.1 CDS Spea_3085 NC_009901.1 3784284 3785402 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3784284..3785402) Shewanella pealeana ATCC 700345 5663475 YP_001502938.1 CDS Spea_3086 NC_009901.1 3785671 3786960 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: saz:Sama_2517 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease complement(3785671..3786960) Shewanella pealeana ATCC 700345 5663476 YP_001502939.1 CDS Spea_3087 NC_009901.1 3787762 3789579 R KEGG: saz:Sama_1111 ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease complement(3787762..3789579) Shewanella pealeana ATCC 700345 5663477 YP_001502940.1 CDS Spea_3089 NC_009901.1 3791519 3791632 R KEGG: sbm:Shew185_3420 hypothetical protein; hypothetical protein complement(3791519..3791632) Shewanella pealeana ATCC 700345 5664801 YP_001502941.1 CDS Spea_3090 NC_009901.1 3792760 3794298 R PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: spc:Sputcn32_0955 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17 leucyl aminopeptidase domain-containing protein complement(3792760..3794298) Shewanella pealeana ATCC 700345 5663479 YP_001502942.1 CDS Spea_3091 NC_009901.1 3794531 3795991 D KEGG: she:Shewmr4_0948 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3794531..3795991 Shewanella pealeana ATCC 700345 5663480 YP_001502943.1 CDS Spea_3092 NC_009901.1 3796092 3797168 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3796092..3797168) Shewanella pealeana ATCC 700345 5663481 YP_001502944.1 CDS Spea_3093 NC_009901.1 3797424 3797663 R hypothetical protein complement(3797424..3797663) Shewanella pealeana ATCC 700345 5663482 YP_001502945.1 CDS Spea_3094 NC_009901.1 3797913 3798380 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: slo:Shew_2872 bacterioferritin; bacterioferritin complement(3797913..3798380) Shewanella pealeana ATCC 700345 5663483 YP_001502946.1 CDS Spea_3095 NC_009901.1 3798393 3798860 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: slo:Shew_2873 bacterioferritin; bacterioferritin complement(3798393..3798860) Shewanella pealeana ATCC 700345 5663484 YP_001502947.1 CDS Spea_3096 NC_009901.1 3799195 3799416 R PFAM: protein of unknown function DUF539; KEGG: slo:Shew_2874 protein of unknown function DUF539; hypothetical protein complement(3799195..3799416) Shewanella pealeana ATCC 700345 5663485 YP_001502948.1 CDS Spea_3097 NC_009901.1 3799429 3800445 R PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_0942 ApbE family lipoprotein; ApbE family lipoprotein complement(3799429..3800445) Shewanella pealeana ATCC 700345 5663486 YP_001502949.1 CDS Spea_3098 NC_009901.1 3800475 3801722 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(3800475..3801722) Shewanella pealeana ATCC 700345 5663487 YP_001502950.1 CDS Spea_3099 NC_009901.1 3801770 3802378 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(3801770..3802378) Shewanella pealeana ATCC 700345 5663488 YP_001502951.1 CDS Spea_3100 NC_009901.1 3802384 3803016 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(3802384..3803016) Shewanella pealeana ATCC 700345 5663489 YP_001502952.1 CDS Spea_3101 NC_009901.1 3803016 3803810 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(3803016..3803810) Shewanella pealeana ATCC 700345 5663490 YP_001502953.1 CDS Spea_3102 NC_009901.1 3803803 3805002 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(3803803..3805002) Shewanella pealeana ATCC 700345 5663491 YP_001502954.1 CDS Spea_3103 NC_009901.1 3805002 3806336 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(3805002..3806336) Shewanella pealeana ATCC 700345 5663492 YP_001502955.1 CDS Spea_3104 NC_009901.1 3806980 3807489 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(3806980..3807489) Shewanella pealeana ATCC 700345 5663493 YP_001502956.1 CDS Spea_3105 NC_009901.1 3807802 3808101 R PFAM: BolA family protein; KEGG: slo:Shew_2883 BolA family protein; BolA family protein complement(3807802..3808101) Shewanella pealeana ATCC 700345 5663494 YP_001502957.1 CDS Spea_3106 NC_009901.1 3808223 3808930 R KEGG: sbl:Sbal_0919 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(3808223..3808930) Shewanella pealeana ATCC 700345 5663495 YP_001502958.1 CDS Spea_3107 NC_009901.1 3809096 3810370 D PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: shw:Sputw3181_3242 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3809096..3810370 Shewanella pealeana ATCC 700345 5663496 YP_001502959.1 CDS Spea_3108 NC_009901.1 3810468 3811415 R PFAM: fatty acid hydroxylase; KEGG: sbm:Shew185_3594 sterol desaturase family protein; fatty acid hydroxylase complement(3810468..3811415) Shewanella pealeana ATCC 700345 5663497 YP_001502960.1 CDS Spea_3109 NC_009901.1 3811523 3812587 R KEGG: slo:Shew_2888 hypothetical protein; hypothetical protein complement(3811523..3812587) Shewanella pealeana ATCC 700345 5663498 YP_001502961.1 CDS Spea_3110 NC_009901.1 3812826 3813431 D PFAM: Uncharacterized lipoprotein; KEGG: slo:Shew_2889 uncharacterized lipoprotein; hypothetical protein 3812826..3813431 Shewanella pealeana ATCC 700345 5663499 YP_001502962.1 CDS Spea_3111 NC_009901.1 3813481 3814140 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sfr:Sfri_3112 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3813481..3814140 Shewanella pealeana ATCC 700345 5663500 YP_001502963.1 CDS Spea_3112 NC_009901.1 3814259 3814579 D KEGG: slo:Shew_2891 hypothetical protein; hypothetical protein 3814259..3814579 Shewanella pealeana ATCC 700345 5663501 YP_001502964.1 CDS Spea_3113 NC_009901.1 3815049 3816479 D PFAM: major facilitator superfamily MFS_1; KEGG: slo:Shew_2892 major facilitator superfamily MFS_1; major facilitator transporter 3815049..3816479 Shewanella pealeana ATCC 700345 5663502 YP_001502965.1 CDS Spea_3114 NC_009901.1 3816716 3817201 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(3816716..3817201) Shewanella pealeana ATCC 700345 5663503 YP_001502966.1 CDS Spea_3115 NC_009901.1 3817303 3817731 D PFAM: VanZ family protein; KEGG: slo:Shew_2894 VanZ family protein; VanZ family protein 3817303..3817731 Shewanella pealeana ATCC 700345 5663504 YP_001502967.1 CDS Spea_3116 NC_009901.1 3817738 3818769 D KEGG: slo:Shew_2895 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3817738..3818769 Shewanella pealeana ATCC 700345 5663505 YP_001502968.1 CDS Spea_3117 NC_009901.1 3818940 3820439 D PFAM: sodium:neurotransmitter symporter; KEGG: ppr:PBPRA1510 putative sodium-dependent transporter; sodium:neurotransmitter symporter 3818940..3820439 Shewanella pealeana ATCC 700345 5663506 YP_001502969.1 CDS Spea_3118 NC_009901.1 3820639 3821346 D PFAM: phosphoesterase PA-phosphatase related; KEGG: slo:Shew_2901 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 3820639..3821346 Shewanella pealeana ATCC 700345 5663507 YP_001502970.1 CDS Spea_3119 NC_009901.1 3821350 3822225 R KEGG: sbl:Sbal_0704 hypothetical protein; hypothetical protein complement(3821350..3822225) Shewanella pealeana ATCC 700345 5663508 YP_001502971.1 CDS Spea_3120 NC_009901.1 3822410 3823972 R PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: saz:Sama_3423 transporter; putative transporter AbgT complement(3822410..3823972) Shewanella pealeana ATCC 700345 5663509 YP_001502972.1 CDS Spea_3121 NC_009901.1 3824190 3825038 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3824190..3825038) Shewanella pealeana ATCC 700345 5663510 YP_001502973.1 CDS Spea_3122 NC_009901.1 3825108 3826376 R PFAM: protein of unknown function DUF819; KEGG: slo:Shew_2905 protein of unknown function DUF819; hypothetical protein complement(3825108..3826376) Shewanella pealeana ATCC 700345 5663511 YP_001502974.1 CDS Spea_3123 NC_009901.1 3826590 3827378 R KEGG: slo:Shew_2906 hypothetical protein; hypothetical protein complement(3826590..3827378) Shewanella pealeana ATCC 700345 5663512 YP_001502975.1 CDS Spea_3124 NC_009901.1 3827378 3827773 R PFAM: Invasion gene expression up-regulator SirB; KEGG: son:SO_3830 hypothetical protein; invasion gene expression up-regulator SirB complement(3827378..3827773) Shewanella pealeana ATCC 700345 5663513 YP_001502976.1 CDS Spea_3125 NC_009901.1 3828059 3828901 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: slo:Shew_2911 modification methylase, HemK family; HemK family modification methylase complement(3828059..3828901) Shewanella pealeana ATCC 700345 5663514 YP_001502977.1 CDS prfA NC_009901.1 3828949 3830034 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3828949..3830034) Shewanella pealeana ATCC 700345 5663515 YP_001502978.1 CDS hemA NC_009901.1 3830048 3831298 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(3830048..3831298) Shewanella pealeana ATCC 700345 5663516 YP_001502979.1 CDS Spea_3128 NC_009901.1 3831568 3832227 D PFAM: outer membrane lipoprotein LolB; KEGG: sbm:Shew185_3616 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3831568..3832227 Shewanella pealeana ATCC 700345 5663517 YP_001502980.1 CDS ipk NC_009901.1 3832224 3833078 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3832224..3833078 Shewanella pealeana ATCC 700345 5663518 YP_001502981.1 CDS Spea_3130 NC_009901.1 3833116 3834090 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3833116..3834090 Shewanella pealeana ATCC 700345 5663519 YP_001502982.1 CDS Spea_3131 NC_009901.1 3834174 3834599 R KEGG: slo:Shew_2917 hypothetical protein; hypothetical protein complement(3834174..3834599) Shewanella pealeana ATCC 700345 5663520 YP_001502983.1 CDS Spea_3132 NC_009901.1 3834636 3835052 R KEGG: slo:Shew_2918 hypothetical protein; hypothetical protein complement(3834636..3835052) Shewanella pealeana ATCC 700345 5663521 YP_001502984.1 CDS Spea_3133 NC_009901.1 3837555 3838646 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3837555..3838646) Shewanella pealeana ATCC 700345 5664814 YP_001502985.1 CDS Spea_3134 NC_009901.1 3838700 3839326 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3838700..3839326) Shewanella pealeana ATCC 700345 5663523 YP_001502986.1 CDS Spea_3135 NC_009901.1 3839549 3840748 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: slo:Shew_2921 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3839549..3840748) Shewanella pealeana ATCC 700345 5663524 YP_001502987.1 CDS Spea_3136 NC_009901.1 3841058 3841372 D KEGG: sbm:Shew185_3302 hypothetical protein; hypothetical protein 3841058..3841372 Shewanella pealeana ATCC 700345 5663525 YP_001502988.1 CDS Spea_3137 NC_009901.1 3841468 3842895 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3841468..3842895 Shewanella pealeana ATCC 700345 5663526 YP_001502989.1 CDS Spea_3138 NC_009901.1 3843057 3844097 D PFAM: PhoH family protein; KEGG: slo:Shew_2924 PhoH family protein; PhoH family protein 3843057..3844097 Shewanella pealeana ATCC 700345 5663527 YP_001502990.1 CDS Spea_3139 NC_009901.1 3844090 3844560 D PFAM: protein of unknown function UPF0054; KEGG: sdn:Sden_0813 protein of unknown function UPF0054; putative metalloprotease 3844090..3844560 Shewanella pealeana ATCC 700345 5663528 YP_001502991.1 CDS Spea_3140 NC_009901.1 3844588 3845469 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: slo:Shew_2926 CBS domain containing protein; hypothetical protein 3844588..3845469 Shewanella pealeana ATCC 700345 5663529 YP_001502992.1 CDS lnt NC_009901.1 3845509 3847044 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3845509..3847044 Shewanella pealeana ATCC 700345 5663530 YP_001502993.1 CDS Spea_3142 NC_009901.1 3847216 3847716 R PFAM: protein of unknown function DUF1451; KEGG: slo:Shew_2928 protein of unknown function DUF1451; hypothetical protein complement(3847216..3847716) Shewanella pealeana ATCC 700345 5663531 YP_001502994.1 CDS leuS NC_009901.1 3847810 3850416 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3847810..3850416 Shewanella pealeana ATCC 700345 5663532 YP_001502995.1 CDS Spea_3144 NC_009901.1 3850449 3850943 D PFAM: Rare lipoprotein B; KEGG: shn:Shewana3_1000 rare lipoprotein B; rare lipoprotein B 3850449..3850943 Shewanella pealeana ATCC 700345 5663533 YP_001502996.1 CDS Spea_3145 NC_009901.1 3850943 3851974 D KEGG: slo:Shew_2931 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3850943..3851974 Shewanella pealeana ATCC 700345 5663534 YP_001502997.1 CDS Spea_3146 NC_009901.1 3851974 3852624 D KEGG: sfr:Sfri_0702 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3851974..3852624 Shewanella pealeana ATCC 700345 5663535 YP_001502998.1 CDS Spea_3147 NC_009901.1 3852723 3853052 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sbm:Shew185_3315 iojap-like protein; iojap family protein 3852723..3853052 Shewanella pealeana ATCC 700345 5663536 YP_001502999.1 CDS Spea_3148 NC_009901.1 3853052 3853522 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3853052..3853522 Shewanella pealeana ATCC 700345 5663537 YP_001503000.1 CDS Spea_3149 NC_009901.1 3853607 3855463 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: slo:Shew_2935 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 3853607..3855463 Shewanella pealeana ATCC 700345 5663538 YP_001503001.1 CDS Spea_3150 NC_009901.1 3855460 3856566 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: slo:Shew_2936 rod shape-determining protein RodA; rod shape-determining protein RodA 3855460..3856566 Shewanella pealeana ATCC 700345 5663539 YP_001503002.1 CDS Spea_3151 NC_009901.1 3856668 3857666 D TIGRFAM: lytic murein transglycosylase B; KEGG: sbm:Shew185_3319 lytic murein transglycosylase B; lytic murein transglycosylase B 3856668..3857666 Shewanella pealeana ATCC 700345 5663540 YP_001503003.1 CDS Spea_3152 NC_009901.1 3857653 3858435 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: slo:Shew_2938 rare lipoprotein A; rare lipoprotein A 3857653..3858435 Shewanella pealeana ATCC 700345 5663541 YP_001503004.1 CDS Spea_3153 NC_009901.1 3858541 3859713 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: slo:Shew_2939 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3858541..3859713 Shewanella pealeana ATCC 700345 5663542 YP_001503005.1 CDS Spea_3154 NC_009901.1 3859846 3860112 D PFAM: protein of unknown function DUF493; KEGG: shw:Sputw3181_1029 protein of unknown function DUF493; hypothetical protein 3859846..3860112 Shewanella pealeana ATCC 700345 5663543 YP_001503006.1 CDS lipB NC_009901.1 3860207 3860866 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3860207..3860866 Shewanella pealeana ATCC 700345 5663544 YP_001503007.1 CDS Spea_3156 NC_009901.1 3860859 3861824 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3860859..3861824 Shewanella pealeana ATCC 700345 5663545 YP_001503008.1 CDS Spea_3157 NC_009901.1 3861920 3862357 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_0987 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(3861920..3862357) Shewanella pealeana ATCC 700345 5663546 YP_001503009.1 CDS Spea_3158 NC_009901.1 3862357 3862704 R KEGG: sfr:Sfri_0690 hypothetical protein; hypothetical protein complement(3862357..3862704) Shewanella pealeana ATCC 700345 5663547 YP_001503010.1 CDS Spea_3159 NC_009901.1 3863366 3864334 R KEGG: sco:SCO0535 hydrolase (secreted protein); hydrolase complement(3863366..3864334) Shewanella pealeana ATCC 700345 5664816 YP_001503011.1 CDS Spea_3160 NC_009901.1 3864623 3864976 R KEGG: vha:VIBHAR_03714 hypothetical protein; hypothetical protein complement(3864623..3864976) Shewanella pealeana ATCC 700345 5663549 YP_001503012.1 CDS Spea_3161 NC_009901.1 3865578 3866594 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 3865578..3866594 Shewanella pealeana ATCC 700345 5663550 YP_001503013.1 CDS Spea_3162 NC_009901.1 3872842 3873405 D KEGG: sbl:Sbal_1020 hypothetical protein; hypothetical protein 3872842..3873405 Shewanella pealeana ATCC 700345 5664819 YP_001503014.1 CDS Spea_3163 NC_009901.1 3873495 3873821 R KEGG: slo:Shew_2947 hypothetical protein; hypothetical protein complement(3873495..3873821) Shewanella pealeana ATCC 700345 5663552 YP_001503015.1 CDS Spea_3164 NC_009901.1 3874215 3876788 R PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: slo:Shew_2948 ATPase AAA-2 domain protein; ATPase complement(3874215..3876788) Shewanella pealeana ATCC 700345 5663553 YP_001503016.1 CDS Spea_3165 NC_009901.1 3877014 3877760 R PFAM: protein of unknown function DUF152; KEGG: slo:Shew_2949 protein of unknown function DUF152; hypothetical protein complement(3877014..3877760) Shewanella pealeana ATCC 700345 5663554 YP_001503017.1 CDS Spea_3166 NC_009901.1 3877760 3878731 R KEGG: slo:Shew_2950 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(3877760..3878731) Shewanella pealeana ATCC 700345 5663555 YP_001503018.1 CDS Spea_3167 NC_009901.1 3878809 3879615 D KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein 3878809..3879615 Shewanella pealeana ATCC 700345 5663556 YP_001503019.1 CDS Spea_3168 NC_009901.1 3879732 3881903 R KEGG: vvu:VV1_2366 predicted exporter of the RND superfamily; exporter of the RND superfamily protein-like protein complement(3879732..3881903) Shewanella pealeana ATCC 700345 5663557 YP_001503020.1 CDS Spea_3169 NC_009901.1 3882417 3884279 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shn:Shewana3_0764 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3882417..3884279) Shewanella pealeana ATCC 700345 5664820 YP_001503021.1 CDS Spea_3170 NC_009901.1 3884520 3885467 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3884520..3885467 Shewanella pealeana ATCC 700345 5663559 YP_001503022.1 CDS Spea_3171 NC_009901.1 3885702 3886247 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: slo:Shew_2956 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3885702..3886247 Shewanella pealeana ATCC 700345 5663560 YP_001503023.1 CDS Spea_3172 NC_009901.1 3886240 3886782 D KEGG: shn:Shewana3_0762 hypothetical protein; hypothetical protein 3886240..3886782 Shewanella pealeana ATCC 700345 5663561 YP_001503024.1 CDS Spea_3173 NC_009901.1 3886779 3887720 D KEGG: sfr:Sfri_0844 hypothetical protein; hypothetical protein 3886779..3887720 Shewanella pealeana ATCC 700345 5663562 YP_001503025.1 CDS Spea_3174 NC_009901.1 3887808 3888710 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2959 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3887808..3888710) Shewanella pealeana ATCC 700345 5663563 YP_001503026.1 CDS Spea_3175 NC_009901.1 3889157 3894106 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: slo:Shew_2960 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 3889157..3894106 Shewanella pealeana ATCC 700345 5663564 YP_001503027.1 CDS Spea_3176 NC_009901.1 3894376 3895068 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shw:Sputw3181_3383 pseudouridine synthase; pseudouridine synthase complement(3894376..3895068) Shewanella pealeana ATCC 700345 5663565 YP_001503028.1 CDS Spea_3177 NC_009901.1 3895472 3897556 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: slo:Shew_2973 endothelin-converting enzyme 1; endothelin-converting protein 1 3895472..3897556 Shewanella pealeana ATCC 700345 5663566 YP_001503029.1 CDS Spea_3178 NC_009901.1 3897948 3898733 D KEGG: she:Shewmr4_3180 hypothetical protein; hypothetical protein 3897948..3898733 Shewanella pealeana ATCC 700345 5663567 YP_001503030.1 CDS Spea_3179 NC_009901.1 3899146 3899550 D KEGG: slo:Shew_2971 hypothetical protein; hypothetical protein 3899146..3899550 Shewanella pealeana ATCC 700345 5663568 YP_001503031.1 CDS Spea_3180 NC_009901.1 3899615 3900115 D KEGG: slo:Shew_2970 hypothetical protein; hypothetical protein 3899615..3900115 Shewanella pealeana ATCC 700345 5663569 YP_001503032.1 CDS Spea_3181 NC_009901.1 3900419 3901042 R PFAM: Glutathione S-transferase domain; KEGG: slo:Shew_2968 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(3900419..3901042) Shewanella pealeana ATCC 700345 5663570 YP_001503033.1 CDS Spea_3182 NC_009901.1 3901284 3901820 D PFAM: membrane-flanked domain; KEGG: spc:Sputcn32_0787 membrane-flanked domain; membrane-flanked domain-containing protein 3901284..3901820 Shewanella pealeana ATCC 700345 5663571 YP_001503034.1 CDS Spea_3183 NC_009901.1 3901981 3903129 D KEGG: sbl:Sbal_0678 putative manganese transporter; putative manganese transporter 3901981..3903129 Shewanella pealeana ATCC 700345 5663572 YP_001503035.1 CDS Spea_3184 NC_009901.1 3903154 3904323 D PFAM: beta-lactamase; KEGG: son:SO_0914 hypothetical protein; beta-lactamase 3903154..3904323 Shewanella pealeana ATCC 700345 5663573 YP_001503036.1 CDS Spea_3185 NC_009901.1 3904421 3904894 D PFAM: protein of unknown function DUF1456; KEGG: slo:Shew_2963 protein of unknown function DUF1456; hypothetical protein 3904421..3904894 Shewanella pealeana ATCC 700345 5663574 YP_001503037.1 CDS Spea_3186 NC_009901.1 3905579 3907267 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3905579..3907267 Shewanella pealeana ATCC 700345 5663575 YP_001503038.1 CDS Spea_3187 NC_009901.1 3907475 3908053 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3558 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3907475..3908053) Shewanella pealeana ATCC 700345 5663576 YP_001503039.1 CDS Spea_3188 NC_009901.1 3908137 3910407 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0608 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(3908137..3910407) Shewanella pealeana ATCC 700345 5663577 YP_001503040.1 CDS Spea_3189 NC_009901.1 3911023 3911226 R KEGG: sfr:Sfri_3147 transposase, IS4 family protein; hypothetical protein complement(3911023..3911226) Shewanella pealeana ATCC 700345 5663578 YP_001503041.1 CDS Spea_3190 NC_009901.1 3911915 3912403 R KEGG: slo:Shew_2976 hypothetical protein; hypothetical protein complement(3911915..3912403) Shewanella pealeana ATCC 700345 5663579 YP_001503042.1 CDS Spea_3191 NC_009901.1 3912433 3912957 R PFAM: phosphoesterase PA-phosphatase related; KEGG: sbm:Shew185_3636 phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(3912433..3912957) Shewanella pealeana ATCC 700345 5663580 YP_001503043.1 CDS Spea_3192 NC_009901.1 3913143 3915026 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2977 diguanylate cyclase; diguanylate cyclase 3913143..3915026 Shewanella pealeana ATCC 700345 5663581 YP_001503044.1 CDS Spea_3193 NC_009901.1 3915263 3917146 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_2977 diguanylate cyclase; diguanylate cyclase 3915263..3917146 Shewanella pealeana ATCC 700345 5663582 YP_001503045.1 CDS Spea_3194 NC_009901.1 3917264 3918487 D TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: slo:Shew_2979 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster-binding protein 3917264..3918487 Shewanella pealeana ATCC 700345 5663583 YP_001503046.1 CDS Spea_3195 NC_009901.1 3918554 3918766 R PFAM: protein of unknown function DUF1458; KEGG: sfr:Sfri_0829 protein of unknown function DUF1458; hypothetical protein complement(3918554..3918766) Shewanella pealeana ATCC 700345 5663584 YP_001503047.1 CDS Spea_3196 NC_009901.1 3918930 3919433 R TIGRFAM: alkylhydroperoxidase-like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: afw:Anae109_3146 alkylhydroperoxidase-like protein, AhpD family; alkylhydroperoxidase complement(3918930..3919433) Shewanella pealeana ATCC 700345 5663585 YP_001503048.1 CDS Spea_3197 NC_009901.1 3919563 3920456 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1577 hypothetical transcriptional regulator; LysR family transcriptional regulator 3919563..3920456 Shewanella pealeana ATCC 700345 5663586 YP_001503049.1 CDS Spea_3198 NC_009901.1 3920537 3921103 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shw:Sputw3181_3956 redoxin domain protein; alkyl hydroperoxide reductase complement(3920537..3921103) Shewanella pealeana ATCC 700345 5663587 YP_001503050.1 CDS Spea_3199 NC_009901.1 3921090 3921824 R PFAM: DSBA oxidoreductase; KEGG: shw:Sputw3181_3957 DsbA oxidoreductase; DSBA oxidoreductase complement(3921090..3921824) Shewanella pealeana ATCC 700345 5663588 YP_001503051.1 CDS Spea_3200 NC_009901.1 3921955 3924012 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: sbm:Shew185_4225 cytochrome c biogenesis protein transmembrane region; cytochrome C biogenesis transmembrane protein complement(3921955..3924012) Shewanella pealeana ATCC 700345 5663589 YP_001503052.1 CDS Spea_3201 NC_009901.1 3924231 3924626 R KEGG: shw:Sputw3181_3959 hypothetical protein; hypothetical protein complement(3924231..3924626) Shewanella pealeana ATCC 700345 5663590 YP_001503053.1 CDS Spea_3202 NC_009901.1 3924911 3927181 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3924911..3927181) Shewanella pealeana ATCC 700345 5663591 YP_001503054.1 CDS Spea_3203 NC_009901.1 3927359 3928261 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_3641 transcriptional regulator, LysR family; LysR family transcriptional regulator 3927359..3928261 Shewanella pealeana ATCC 700345 5663592 YP_001503055.1 CDS Spea_3204 NC_009901.1 3928312 3929040 R PFAM: Metal-dependent hydrolase HDOD; KEGG: slo:Shew_2988 putative signal transduction protein; putative signal transduction protein complement(3928312..3929040) Shewanella pealeana ATCC 700345 5663593 YP_001503056.1 CDS Spea_3205 NC_009901.1 3929626 3930231 R PFAM: lipolytic protein G-D-S-L family; KEGG: saz:Sama_2630 lipolytic enzyme, G-D-S-L; GDSL family lipase complement(3929626..3930231) Shewanella pealeana ATCC 700345 5663594 YP_001503057.1 CDS Spea_3206 NC_009901.1 3930329 3932182 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_1162 TonB-dependent vitamin B12 receptor; TonB-dependent receptor plug complement(3930329..3932182) Shewanella pealeana ATCC 700345 5663595 YP_001503058.1 CDS Spea_3207 NC_009901.1 3932761 3933408 R KEGG: sbl:Sbal_0662 hypothetical protein; hypothetical protein complement(3932761..3933408) Shewanella pealeana ATCC 700345 5663596 YP_001503059.1 CDS Spea_3208 NC_009901.1 3933667 3934044 D PFAM: Penicillinase repressor; KEGG: slo:Shew_2994 transcriptional repressor, CopY family; CopY family transcriptional regulator 3933667..3934044 Shewanella pealeana ATCC 700345 5663597 YP_001503060.1 CDS Spea_3209 NC_009901.1 3934041 3935234 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; peptidase M56 BlaR1; KEGG: slo:Shew_2995 TonB family protein; TonB family protein 3934041..3935234 Shewanella pealeana ATCC 700345 5663598 YP_001503061.1 CDS Spea_3210 NC_009901.1 3935332 3936117 R KEGG: cps:CPS_3036 hypothetical protein; hypothetical protein complement(3935332..3936117) Shewanella pealeana ATCC 700345 5663599 YP_001503062.1 CDS Spea_3211 NC_009901.1 3936609 3937130 R PFAM: NADPH-dependent FMN reductase; KEGG: cps:CPS_1243 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase complement(3936609..3937130) Shewanella pealeana ATCC 700345 5663600 YP_001503063.1 CDS Spea_3212 NC_009901.1 3937337 3938230 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cps:CPS_1244 transcriptional regulator, LysR family; LysR family transcriptional regulator 3937337..3938230 Shewanella pealeana ATCC 700345 5663601 YP_001503064.1 CDS Spea_3213 NC_009901.1 3938389 3940557 D SMART: extracellular solute-binding protein family 3; KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3938389..3940557 Shewanella pealeana ATCC 700345 5663602 YP_001503065.1 CDS Spea_3214 NC_009901.1 3940661 3941380 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mmw:Mmwyl1_1893 pseudouridine synthase; pseudouridine synthase complement(3940661..3941380) Shewanella pealeana ATCC 700345 5663603 YP_001503066.1 CDS Spea_3215 NC_009901.1 3941581 3942618 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3941581..3942618 Shewanella pealeana ATCC 700345 5663604 YP_001503067.1 CDS Spea_3216 NC_009901.1 3942888 3943232 D KEGG: slo:Shew_2639 hypothetical protein; hypothetical protein 3942888..3943232 Shewanella pealeana ATCC 700345 5663605 YP_001503068.1 CDS Spea_3217 NC_009901.1 3943326 3944105 R KEGG: slo:Shew_3002 hypothetical protein; hypothetical protein complement(3943326..3944105) Shewanella pealeana ATCC 700345 5663606 YP_001503069.1 CDS Spea_3218 NC_009901.1 3944366 3944644 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: slo:Shew_3008 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3944366..3944644 Shewanella pealeana ATCC 700345 5663607 YP_001503070.1 CDS Spea_3219 NC_009901.1 3944934 3946013 R PFAM: glucose sorbosone dehydrogenase; KEGG: ppr:PBPRB1412 hypothetical glucose dehydrogenase; glucose sorbosone dehydrogenase complement(3944934..3946013) Shewanella pealeana ATCC 700345 5663608 YP_001503071.1 CDS Spea_3220 NC_009901.1 3946456 3948450 R PFAM: protein of unknown function DUF1704; KEGG: slo:Shew_2900 protein of unknown function DUF1704; hypothetical protein complement(3946456..3948450) Shewanella pealeana ATCC 700345 5663609 YP_001503072.1 CDS Spea_3221 NC_009901.1 3948434 3949453 R The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(3948434..3949453) Shewanella pealeana ATCC 700345 5663610 YP_001503073.1 CDS Spea_3222 NC_009901.1 3949982 3950770 D KEGG: slo:Shew_0733 hypothetical protein; hypothetical protein 3949982..3950770 Shewanella pealeana ATCC 700345 5663611 YP_001503074.1 CDS Spea_3223 NC_009901.1 3950863 3951894 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VV2684 GGDEF family protein; diguanylate cyclase complement(3950863..3951894) Shewanella pealeana ATCC 700345 5663612 YP_001503075.1 CDS Spea_3224 NC_009901.1 3952171 3953280 R TIGRFAM: putative outer membrane adhesin like proteiin; KEGG: prw:PsycPRwf_1167 putative outer membrane adhesin like proteiin; outer membrane adhesin-like protein complement(3952171..3953280) Shewanella pealeana ATCC 700345 5663613 YP_001503076.1 CDS Spea_3225 NC_009901.1 3953305 3954198 R hypothetical protein complement(3953305..3954198) Shewanella pealeana ATCC 700345 5663614 YP_001503077.1 CDS Spea_3226 NC_009901.1 3954297 3954941 R PFAM: LVIVD repeat protein; LVIVD repeat-containing protein complement(3954297..3954941) Shewanella pealeana ATCC 700345 5663615 YP_001503078.1 CDS Spea_3227 NC_009901.1 3955205 3956749 D PFAM: ferredoxin-dependent glutamate synthase; SMART: zinc finger CDGSH-type domain protein; KEGG: vpa:VPA0765 putative glutamate synthetase; ferredoxin-dependent glutamate synthase 3955205..3956749 Shewanella pealeana ATCC 700345 5663616 YP_001503079.1 CDS Spea_3228 NC_009901.1 3956915 3957505 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: sbl:Sbal_1573 HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD family hydrolase complement(3956915..3957505) Shewanella pealeana ATCC 700345 5663617 YP_001503080.1 CDS Spea_3229 NC_009901.1 3957552 3960125 R KEGG: sfr:Sfri_0910 UTP-GlnB uridylyltransferase, GlnD; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; GlnD PII-uridylyltransferase; protein-P-II uridylyltransferase complement(3957552..3960125) Shewanella pealeana ATCC 700345 5663618 YP_001503081.1 CDS Spea_3230 NC_009901.1 3960539 3960952 D KEGG: sdn:Sden_2069 hypothetical protein; hypothetical protein 3960539..3960952 Shewanella pealeana ATCC 700345 5663619 YP_001503082.1 CDS Spea_3231 NC_009901.1 3960980 3961939 R KEGG: pin:Ping_2245 hypothetical protein; hypothetical protein complement(3960980..3961939) Shewanella pealeana ATCC 700345 5663620 YP_001503083.1 CDS Spea_3232 NC_009901.1 3962085 3963554 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: slo:Shew_3327 RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein complement(3962085..3963554) Shewanella pealeana ATCC 700345 5663621 YP_001503084.1 CDS Spea_3233 NC_009901.1 3963814 3965004 R KEGG: slo:Shew_2655 hypothetical protein; hypothetical protein complement(3963814..3965004) Shewanella pealeana ATCC 700345 5663622 YP_001503085.1 CDS Spea_3234 NC_009901.1 3965497 3965745 D KEGG: ppr:PBPRB0452 hypothetical protein; hypothetical protein 3965497..3965745 Shewanella pealeana ATCC 700345 5663623 YP_001503086.1 CDS Spea_3235 NC_009901.1 3965819 3967702 R PFAM: Curlin associated repeat protein; KEGG: sfr:Sfri_1516 curlin associated repeat protein; curlin-associated protein complement(3965819..3967702) Shewanella pealeana ATCC 700345 5663624 YP_001503087.1 CDS Spea_3236 NC_009901.1 3968235 3969122 D PFAM: band 7 protein; KEGG: slo:Shew_0978 band 7 protein; hypothetical protein 3968235..3969122 Shewanella pealeana ATCC 700345 5663625 YP_001503088.1 CDS Spea_3237 NC_009901.1 3969372 3971117 D KEGG: vha:VIBHAR_05537 hypothetical protein; hypothetical protein 3969372..3971117 Shewanella pealeana ATCC 700345 5663626 YP_001503089.1 CDS Spea_3238 NC_009901.1 3971380 3972459 D PFAM: PepSY-associated TM helix domain protein; KEGG: sde:Sde_2820 hypothetical protein; PepSY-associated TM helix domain-containing protein 3971380..3972459 Shewanella pealeana ATCC 700345 5663627 YP_001503090.1 CDS Spea_3239 NC_009901.1 3972694 3974772 D PFAM: peptidase M13 neprilysin; peptidase M13; KEGG: sfr:Sfri_1958 endothelin-converting enzyme 1; endothelin-converting protein 1 3972694..3974772 Shewanella pealeana ATCC 700345 5663628 YP_001503091.1 CDS Spea_3240 NC_009901.1 3975003 3975860 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3975003..3975860 Shewanella pealeana ATCC 700345 5663629 YP_001503092.1 CDS Spea_3241 NC_009901.1 3975935 3976420 R PFAM: protein of unknown function DUF985; KEGG: spc:Sputcn32_3190 protein of unknown function DUF985; hypothetical protein complement(3975935..3976420) Shewanella pealeana ATCC 700345 5663630 YP_001503093.1 CDS Spea_3242 NC_009901.1 3976644 3976892 R KEGG: slo:Shew_3030 hypothetical protein; hypothetical protein complement(3976644..3976892) Shewanella pealeana ATCC 700345 5663631 YP_001503094.1 CDS Spea_3243 NC_009901.1 3977193 3978557 D KEGG: vfi:VFA0969 guanine deaminase; TIGRFAM: Guanine deaminase; PFAM: amidohydrolase; guanine deaminase 3977193..3978557 Shewanella pealeana ATCC 700345 5663632 YP_001503095.1 CDS Spea_3244 NC_009901.1 3978674 3980059 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aha:AHA_0949 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease complement(3978674..3980059) Shewanella pealeana ATCC 700345 5663633 YP_001503096.1 CDS Spea_3245 NC_009901.1 3980467 3981219 D PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM family protein 3980467..3981219 Shewanella pealeana ATCC 700345 5663634 YP_001503097.1 CDS Spea_3246 NC_009901.1 3981385 3982539 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_3855 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein complement(3981385..3982539) Shewanella pealeana ATCC 700345 5663635 YP_001503098.1 CDS Spea_3247 NC_009901.1 3982544 3984142 R PFAM: BCCT transporter; KEGG: oih:OB0704 choline transporter; BCCT transporter complement(3982544..3984142) Shewanella pealeana ATCC 700345 5663636 YP_001503099.1 CDS Spea_3248 NC_009901.1 3984241 3985596 R PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: rpa:RPA2340 hypothetical protein; FAD dependent oxidoreductase complement(3984241..3985596) Shewanella pealeana ATCC 700345 5663637 YP_001503100.1 CDS Spea_3249 NC_009901.1 3985774 3986421 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rru:Rru_A3003 transcriptional regulator, GntR family; GntR family transcriptional regulator 3985774..3986421 Shewanella pealeana ATCC 700345 5663638 YP_001503101.1 CDS Spea_3250 NC_009901.1 3986699 3987394 R KEGG: dme:Dmel_CG2839 CG2839; hypothetical protein complement(3986699..3987394) Shewanella pealeana ATCC 700345 5663639 YP_001503102.1 CDS Spea_3251 NC_009901.1 3987774 3988997 D PFAM: sodium/glutamate symporter; KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter 3987774..3988997 Shewanella pealeana ATCC 700345 5663640 YP_001503103.1 CDS Spea_3252 NC_009901.1 3989316 3990227 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: vfi:VFA0117 transporter, drug/metabolite exporter family; hypothetical protein complement(3989316..3990227) Shewanella pealeana ATCC 700345 5663641 YP_001503104.1 CDS Spea_3253 NC_009901.1 3990520 3992706 R PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: sbl:Sbal_0643 protein of unknown function DUF181; hypothetical protein complement(3990520..3992706) Shewanella pealeana ATCC 700345 5663642 YP_001503105.1 CDS Spea_3254 NC_009901.1 3992926 3993156 R KEGG: sbm:Shew185_3665 hypothetical protein; hypothetical protein complement(3992926..3993156) Shewanella pealeana ATCC 700345 5663643 YP_001503106.1 CDS Spea_3255 NC_009901.1 3993335 3994522 R PFAM: Ankyrin; KEGG: tva:TVAG_291510 ankyrin repeat protein, putative Pfam: Ank Clathrin PROSITE: ANK_REPEAT ANK_REP_REGION; ankyrin complement(3993335..3994522) Shewanella pealeana ATCC 700345 5663644 YP_001503107.1 CDS Spea_3256 NC_009901.1 3994737 3995138 R KEGG: spc:Sputcn32_3202 hypothetical protein; hypothetical protein complement(3994737..3995138) Shewanella pealeana ATCC 700345 5663645 YP_001503108.1 CDS Spea_3257 NC_009901.1 3995265 3996017 R PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit complement(3995265..3996017) Shewanella pealeana ATCC 700345 5663646 YP_001503109.1 CDS Spea_3258 NC_009901.1 3996101 3996499 R KEGG: mmw:Mmwyl1_3491 transposase; transposase complement(3996101..3996499) Shewanella pealeana ATCC 700345 5663647 YP_001503110.1 CDS Spea_3259 NC_009901.1 3996613 3998196 R PFAM: Na+/H+ antiporter NhaC; KEGG: asa:ASA_1781 Na+/H+ antiporter; Na+/H+ antiporter NhaC complement(3996613..3998196) Shewanella pealeana ATCC 700345 5663648 YP_001503111.1 CDS Spea_3260 NC_009901.1 3998909 3999097 D KEGG: slo:Shew_1222 hypothetical protein; hypothetical protein 3998909..3999097 Shewanella pealeana ATCC 700345 5663649 YP_001503112.1 CDS Spea_3261 NC_009901.1 3999616 3999825 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB1929 putative Cold shock-like protein; cold-shock DNA-binding domain-containing protein 3999616..3999825 Shewanella pealeana ATCC 700345 5663650 YP_001503113.1 CDS Spea_3262 NC_009901.1 4000195 4000404 D KEGG: vfi:VFA1093 hypothetical protein; hypothetical protein 4000195..4000404 Shewanella pealeana ATCC 700345 5663651 YP_001503114.1 CDS Spea_3263 NC_009901.1 4000859 4002826 R KEGG: slo:Shew_2580 hypothetical protein; hypothetical protein complement(4000859..4002826) Shewanella pealeana ATCC 700345 5663652 YP_001503115.1 CDS Spea_3264 NC_009901.1 4004145 4005233 R KEGG: son:SO_2929 hypothetical protein; hypothetical protein complement(4004145..4005233) Shewanella pealeana ATCC 700345 5663653 YP_001503116.1 CDS Spea_3266 NC_009901.1 4006097 4007728 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aha:AHA_3197 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4006097..4007728) Shewanella pealeana ATCC 700345 5664821 YP_001503117.1 CDS Spea_3267 NC_009901.1 4008015 4009160 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase complement(4008015..4009160) Shewanella pealeana ATCC 700345 5663655 YP_001503118.1 CDS Spea_3268 NC_009901.1 4009692 4010615 R KEGG: vfi:VF1097 BAX protein; BAX protein complement(4009692..4010615) Shewanella pealeana ATCC 700345 5663656 YP_001503119.1 CDS Spea_3269 NC_009901.1 4010800 4011078 R KEGG: sdn:Sden_0849 hypothetical protein; hypothetical protein complement(4010800..4011078) Shewanella pealeana ATCC 700345 5663657 YP_001503120.1 CDS Spea_3270 NC_009901.1 4011330 4011917 D PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_3270 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4011330..4011917 Shewanella pealeana ATCC 700345 5663658 YP_001503121.1 CDS Spea_3271 NC_009901.1 4012150 4013388 D KEGG: vvu:VV2_0542 Mn2+ and Fe2+ transporter of the NRAMP family; manganese transporter NRAMP 4012150..4013388 Shewanella pealeana ATCC 700345 5663659 YP_001503122.1 CDS Spea_3272 NC_009901.1 4013808 4015235 D PFAM: Citrate transporter; KEGG: ppr:PBPRB0793 putative Na+/H+ antiporter; citrate transporter 4013808..4015235 Shewanella pealeana ATCC 700345 5663660 YP_001503123.1 CDS Spea_3273 NC_009901.1 4015304 4015570 R hypothetical protein complement(4015304..4015570) Shewanella pealeana ATCC 700345 5663661 YP_001503124.1 CDS Spea_3274 NC_009901.1 4015714 4017126 D KEGG: stp:Strop_2134 hypothetical protein; hypothetical protein 4015714..4017126 Shewanella pealeana ATCC 700345 5663662 YP_001503125.1 CDS Spea_3275 NC_009901.1 4017075 4019033 R PFAM: sulfatase; KEGG: tbd:Tbd_0306 arylsulfatase; sulfatase complement(4017075..4019033) Shewanella pealeana ATCC 700345 5663663 YP_001503126.1 CDS Spea_3276 NC_009901.1 4019346 4020491 R TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vfi:VFA0004 tripeptidase T; peptidase T-like protein complement(4019346..4020491) Shewanella pealeana ATCC 700345 5663664 YP_001503127.1 CDS Spea_3277 NC_009901.1 4020681 4021115 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: slo:Shew_3055 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 4020681..4021115 Shewanella pealeana ATCC 700345 5663665 YP_001503128.1 CDS Spea_3278 NC_009901.1 4021659 4022090 D hypothetical protein 4021659..4022090 Shewanella pealeana ATCC 700345 5663666 YP_001503129.1 CDS Spea_3279 NC_009901.1 4022170 4022703 D PFAM: cation antiporter; KEGG: sfr:Sfri_2281 cation antiporter; cation antiporter 4022170..4022703 Shewanella pealeana ATCC 700345 5663667 YP_001503130.1 CDS Spea_3280 NC_009901.1 4022700 4022999 D PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 4022700..4022999 Shewanella pealeana ATCC 700345 5663668 YP_001503131.1 CDS Spea_3281 NC_009901.1 4022996 4023322 D TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: hne:HNE_0731 monovalent cation/proton antiporter, MnhG/PhaG family; monovalent cation/proton antiporter subunit MnhG/PhaG 4022996..4023322 Shewanella pealeana ATCC 700345 5663669 YP_001503132.1 CDS Spea_3282 NC_009901.1 4023415 4024452 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 4023415..4024452 Shewanella pealeana ATCC 700345 5663670 YP_001503133.1 CDS Spea_3283 NC_009901.1 4024452 4024814 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: pla:Plav_2968 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L 4024452..4024814 Shewanella pealeana ATCC 700345 5663671 YP_001503134.1 CDS Spea_3284 NC_009901.1 4024814 4026292 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 4024814..4026292 Shewanella pealeana ATCC 700345 5663672 YP_001503135.1 CDS Spea_3285 NC_009901.1 4026289 4027779 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pla:Plav_2966 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 4026289..4027779 Shewanella pealeana ATCC 700345 5663673 YP_001503136.1 CDS Spea_3286 NC_009901.1 4027769 4028188 D KEGG: smd:Smed_3627 hypothetical protein; hypothetical protein 4027769..4028188 Shewanella pealeana ATCC 700345 5663674 YP_001503137.1 CDS Spea_3287 NC_009901.1 4028175 4029875 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 4028175..4029875 Shewanella pealeana ATCC 700345 5663675 YP_001503138.1 CDS Spea_3288 NC_009901.1 4030159 4031469 D KEGG: bcz:BCZK0821 hypothetical protein; hypothetical protein 4030159..4031469 Shewanella pealeana ATCC 700345 5663676 YP_001503139.1 CDS Spea_3289 NC_009901.1 4032075 4032794 R hypothetical protein complement(4032075..4032794) Shewanella pealeana ATCC 700345 5663677 YP_001503140.1 CDS Spea_3290 NC_009901.1 4032794 4033429 R hypothetical protein complement(4032794..4033429) Shewanella pealeana ATCC 700345 5663678 YP_001503141.1 CDS Spea_3291 NC_009901.1 4033597 4034154 D KEGG: vpa:VP1418 hypothetical protein; hypothetical protein 4033597..4034154 Shewanella pealeana ATCC 700345 5663679 YP_001503142.1 CDS Spea_3292 NC_009901.1 4034230 4034568 D hypothetical protein 4034230..4034568 Shewanella pealeana ATCC 700345 5663680 YP_001503143.1 CDS Spea_3293 NC_009901.1 4034878 4035372 R hypothetical protein complement(4034878..4035372) Shewanella pealeana ATCC 700345 5663681 YP_001503144.1 CDS Spea_3294 NC_009901.1 4035688 4036263 D KEGG: cps:CPS_0790 hypothetical protein; hypothetical protein 4035688..4036263 Shewanella pealeana ATCC 700345 5663682 YP_001503145.1 CDS Spea_3295 NC_009901.1 4036322 4037014 D PFAM: protein of unknown function DUF1568; KEGG: mfa:Mfla_0477 protein of unknown function DUF1568; hypothetical protein 4036322..4037014 Shewanella pealeana ATCC 700345 5663683 YP_001503146.1 CDS Spea_3296 NC_009901.1 4037281 4037850 R hypothetical protein complement(4037281..4037850) Shewanella pealeana ATCC 700345 5663684 YP_001503147.1 CDS Spea_3297 NC_009901.1 4038030 4038560 R hypothetical protein complement(4038030..4038560) Shewanella pealeana ATCC 700345 5663685 YP_001503148.1 CDS Spea_3298 NC_009901.1 4038644 4040521 R KEGG: shm:Shewmr7_0430 NTPase (NACHT family)-like protein; NACHT family-like NTPase complement(4038644..4040521) Shewanella pealeana ATCC 700345 5663686 YP_001503149.1 CDS Spea_3299 NC_009901.1 4040831 4041472 D PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein 4040831..4041472 Shewanella pealeana ATCC 700345 5663687 YP_001503150.1 CDS Spea_3300 NC_009901.1 4041469 4041918 R KEGG: slo:Shew_3059 hypothetical protein; hypothetical protein complement(4041469..4041918) Shewanella pealeana ATCC 700345 5663688 YP_001503151.1 CDS Spea_3301 NC_009901.1 4042194 4045082 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(4042194..4045082) Shewanella pealeana ATCC 700345 5663689 YP_001503152.1 CDS Spea_3302 NC_009901.1 4045342 4045731 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(4045342..4045731) Shewanella pealeana ATCC 700345 5663690 YP_001503153.1 CDS gcvT NC_009901.1 4046160 4047254 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(4046160..4047254) Shewanella pealeana ATCC 700345 5663691 YP_001503154.1 CDS Spea_3304 NC_009901.1 4047593 4048813 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: slo:Shew_3065 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(4047593..4048813) Shewanella pealeana ATCC 700345 5663692 YP_001503155.1 CDS Spea_3305 NC_009901.1 4048910 4050190 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; KEGG: slo:Shew_3066 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase complement(4048910..4050190) Shewanella pealeana ATCC 700345 5663693 YP_001503156.1 CDS Spea_3306 NC_009901.1 4050287 4050862 R TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shw:Sputw3181_0727 YecA family protein; yecA family protein complement(4050287..4050862) Shewanella pealeana ATCC 700345 5663694 YP_001503157.1 CDS Spea_3307 NC_009901.1 4050895 4051140 R hypothetical protein complement(4050895..4051140) Shewanella pealeana ATCC 700345 5663695 YP_001503158.1 CDS Spea_3308 NC_009901.1 4051244 4051564 D PFAM: protein of unknown function DUF710; KEGG: slo:Shew_3068 protein of unknown function DUF710; hypothetical protein 4051244..4051564 Shewanella pealeana ATCC 700345 5663696 YP_001503159.1 CDS Spea_3309 NC_009901.1 4052297 4053148 R KEGG: ckl:CKL_1941 hypothetical protein; hypothetical protein complement(4052297..4053148) Shewanella pealeana ATCC 700345 5663697 YP_001503160.1 CDS Spea_3310 NC_009901.1 4053181 4053567 R hypothetical protein complement(4053181..4053567) Shewanella pealeana ATCC 700345 5663698 YP_001503161.1 CDS Spea_3311 NC_009901.1 4053775 4054404 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: slo:Shew_3069 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 4053775..4054404 Shewanella pealeana ATCC 700345 5663699 YP_001503162.1 CDS Spea_3312 NC_009901.1 4054610 4055230 D PFAM: protein of unknown function DUF1326; KEGG: cps:CPS_2422 hypothetical protein; hypothetical protein 4054610..4055230 Shewanella pealeana ATCC 700345 5663700 YP_001503163.1 CDS Spea_3313 NC_009901.1 4055275 4056012 D KEGG: cps:CPS_2421 hypothetical protein; hypothetical protein 4055275..4056012 Shewanella pealeana ATCC 700345 5663701 YP_001503164.1 CDS Spea_3314 NC_009901.1 4056093 4056761 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(4056093..4056761) Shewanella pealeana ATCC 700345 5663702 YP_001503165.1 CDS Spea_3315 NC_009901.1 4057017 4057574 D KEGG: slo:Shew_3074 pilin, putative; pilin 4057017..4057574 Shewanella pealeana ATCC 700345 5663703 YP_001503166.1 CDS Spea_3316 NC_009901.1 4057654 4058187 D KEGG: sfr:Sfri_3092 methylation site containing protein; methylation site containing protein 4057654..4058187 Shewanella pealeana ATCC 700345 5663704 YP_001503167.1 CDS Spea_3317 NC_009901.1 4058262 4058582 D KEGG: slo:Shew_3075 hypothetical protein; hypothetical protein 4058262..4058582 Shewanella pealeana ATCC 700345 5663705 YP_001503168.1 CDS Spea_3318 NC_009901.1 4058662 4059276 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_3076 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(4058662..4059276) Shewanella pealeana ATCC 700345 5663706 YP_001503169.1 CDS Spea_3319 NC_009901.1 4059695 4060237 D KEGG: sbl:Sbal_0960 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 4059695..4060237 Shewanella pealeana ATCC 700345 5663707 YP_001503170.1 CDS Spea_3320 NC_009901.1 4060373 4061827 D KEGG: she:Shewmr4_0887 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; Fis family transcriptional regulator 4060373..4061827 Shewanella pealeana ATCC 700345 5663708 YP_001503171.1 CDS Spea_3321 NC_009901.1 4062138 4063604 D TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbl:Sbal_0957 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type accessory protein FixG 4062138..4063604 Shewanella pealeana ATCC 700345 5663709 YP_001503172.1 CDS Spea_3322 NC_009901.1 4064078 4065676 D PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_0883 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4064078..4065676 Shewanella pealeana ATCC 700345 5663710 YP_001503173.1 CDS Spea_3323 NC_009901.1 4065793 4066161 R hypothetical protein complement(4065793..4066161) Shewanella pealeana ATCC 700345 5663711 YP_001503174.1 CDS Spea_3324 NC_009901.1 4066318 4068360 R KEGG: slo:Shew_3087 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(4066318..4068360) Shewanella pealeana ATCC 700345 5663712 YP_001503175.1 CDS Spea_3325 NC_009901.1 4068513 4069082 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: shw:Sputw3181_3199 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(4068513..4069082) Shewanella pealeana ATCC 700345 5663713 YP_001503176.1 CDS Spea_3326 NC_009901.1 4069120 4069644 R PFAM: protein of unknown function DUF1008; KEGG: spc:Sputcn32_0967 protein of unknown function DUF1008; hypothetical protein complement(4069120..4069644) Shewanella pealeana ATCC 700345 5663714 YP_001503177.1 CDS Spea_3327 NC_009901.1 4069772 4071838 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_3201 TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent heme/hemoglobin receptor family protein complement(4069772..4071838) Shewanella pealeana ATCC 700345 5663715 YP_001503178.1 CDS Spea_3328 NC_009901.1 4072167 4072925 D TIGRFAM: TonB family protein; KEGG: sbm:Shew185_1020 TonB family protein; TonB family protein 4072167..4072925 Shewanella pealeana ATCC 700345 5663716 YP_001503179.1 CDS Spea_3329 NC_009901.1 4073100 4073876 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbm:Shew185_1019 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4073100..4073876 Shewanella pealeana ATCC 700345 5663717 YP_001503180.1 CDS Spea_3330 NC_009901.1 4073873 4074286 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbl:Sbal_0949 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4073873..4074286 Shewanella pealeana ATCC 700345 5663718 YP_001503181.1 CDS Spea_3331 NC_009901.1 4074481 4075419 D PFAM: periplasmic binding protein; KEGG: sbm:Shew185_1017 periplasmic binding protein; periplasmic-binding protein 4074481..4075419 Shewanella pealeana ATCC 700345 5663719 YP_001503182.1 CDS Spea_3332 NC_009901.1 4075478 4076494 D PFAM: transport system permease protein; KEGG: sbm:Shew185_1016 transport system permease protein; transport system permease 4075478..4076494 Shewanella pealeana ATCC 700345 5663720 YP_001503183.1 CDS hmuV NC_009901.1 4076508 4077314 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 4076508..4077314 Shewanella pealeana ATCC 700345 5663721 YP_001503184.1 CDS Spea_3334 NC_009901.1 4077402 4077959 R PFAM: regulatory protein TetR; KEGG: vfi:VF1676 hypothetical protein; TetR family transcriptional regulator complement(4077402..4077959) Shewanella pealeana ATCC 700345 5663722 YP_001503185.1 CDS Spea_3335 NC_009901.1 4078095 4078628 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: vvu:VV2_1034 dihydrofolate reductase; deaminase-reductase domain-containing protein 4078095..4078628 Shewanella pealeana ATCC 700345 5663723 YP_001503186.1 CDS Spea_3336 NC_009901.1 4078765 4079262 D PFAM: protein of unknown function DUF218; KEGG: bpe:BP2323 hypothetical protein; hypothetical protein 4078765..4079262 Shewanella pealeana ATCC 700345 5663724 YP_001503187.1 CDS Spea_3337 NC_009901.1 4079315 4080220 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pha:PSHAb0015 putative transcriptional regulatory protein (LysR family); LysR family transcriptional regulator complement(4079315..4080220) Shewanella pealeana ATCC 700345 5663725 YP_001503188.1 CDS Spea_3338 NC_009901.1 4080372 4080797 D PFAM: transmembrane pair domain protein; KEGG: vfi:VFA1143 hypothetical membrane spanning protein; transmembrane pair domain-containing protein 4080372..4080797 Shewanella pealeana ATCC 700345 5663726 YP_001503189.1 CDS Spea_3339 NC_009901.1 4081047 4082486 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4081047..4082486 Shewanella pealeana ATCC 700345 5663727 YP_001503190.1 CDS Spea_3340 NC_009901.1 4082569 4082958 D KEGG: vha:VIBHAR_03179 hypothetical protein; hypothetical protein 4082569..4082958 Shewanella pealeana ATCC 700345 5663728 YP_001503191.1 CDS Spea_3341 NC_009901.1 4083261 4083431 D PFAM: periplasmic nitrate reductase NapE; KEGG: sbl:Sbal_3211 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 4083261..4083431 Shewanella pealeana ATCC 700345 5663729 YP_001503192.1 CDS Spea_3342 NC_009901.1 4083472 4084650 D TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO_1233 tetraheme cytochrome c; trimethylamine-N-oxide reductase c-type cytochrome TorC 4083472..4084650 Shewanella pealeana ATCC 700345 5663730 YP_001503193.1 CDS Spea_3343 NC_009901.1 4084665 4087157 D TIGRFAM: trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; trimethylamine-N-oxide reductase TorA 4084665..4087157 Shewanella pealeana ATCC 700345 5663731 YP_001503194.1 CDS torD NC_009901.1 4087154 4087819 D TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4087154..4087819 Shewanella pealeana ATCC 700345 5663732 YP_001503195.1 CDS Spea_3345 NC_009901.1 4087918 4091034 R TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase; Hpt sensor hybrid histidine kinase complement(4087918..4091034) Shewanella pealeana ATCC 700345 5663733 YP_001503196.1 CDS Spea_3346 NC_009901.1 4091116 4092180 D periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 4091116..4092180 Shewanella pealeana ATCC 700345 5663734 YP_001503197.1 CDS Spea_3347 NC_009901.1 4092267 4092977 R response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR complement(4092267..4092977) Shewanella pealeana ATCC 700345 5663735 YP_001503198.1 CDS Spea_3348 NC_009901.1 4093171 4093908 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0030 hypothetical protein; hypothetical protein complement(4093171..4093908) Shewanella pealeana ATCC 700345 5663736 YP_001503199.1 CDS Spea_3349 NC_009901.1 4094050 4094874 R PFAM: Ion transport protein; KEGG: pha:PSHAb0529 putative cation transporter component; Ion transport protein complement(4094050..4094874) Shewanella pealeana ATCC 700345 5663737 YP_001503200.1 CDS Spea_3350 NC_009901.1 4095283 4095579 R KEGG: shw:Sputw3181_0969 hypothetical protein; hypothetical protein complement(4095283..4095579) Shewanella pealeana ATCC 700345 5663738 YP_001503201.1 CDS Spea_3351 NC_009901.1 4095763 4096413 D PFAM: membrane-flanked domain; KEGG: slo:Shew_3091 membrane-flanked domain protein; membrane-flanked domain-containing protein 4095763..4096413 Shewanella pealeana ATCC 700345 5663739 YP_001503202.1 CDS Spea_3352 NC_009901.1 4096403 4097917 D PFAM: membrane-flanked domain; KEGG: slo:Shew_3092 membrane-flanked domain protein; membrane-flanked domain-containing protein 4096403..4097917 Shewanella pealeana ATCC 700345 5663740 YP_001503203.1 CDS Spea_3353 NC_009901.1 4097920 4098498 D PFAM: protein of unknown function DUF924; KEGG: sbl:Sbal_3327 protein of unknown function DUF924; hypothetical protein 4097920..4098498 Shewanella pealeana ATCC 700345 5663741 YP_001503204.1 CDS Spea_3354 NC_009901.1 4098674 4099117 R PFAM: UspA domain protein; KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein complement(4098674..4099117) Shewanella pealeana ATCC 700345 5663742 YP_001503205.1 CDS Spea_3355 NC_009901.1 4099203 4099634 R PFAM: UspA domain protein; KEGG: slo:Shew_3101 UspA domain protein; UspA domain-containing protein complement(4099203..4099634) Shewanella pealeana ATCC 700345 5663743 YP_001503206.1 CDS Spea_3356 NC_009901.1 4099763 4100143 R KEGG: slo:Shew_3102 hypothetical protein; hypothetical protein complement(4099763..4100143) Shewanella pealeana ATCC 700345 5663744 YP_001503207.1 CDS Spea_3357 NC_009901.1 4100337 4101764 D PFAM: aldehyde dehydrogenase; KEGG: sbl:Sbal_3332 aldehyde dehydrogenase; aldehyde dehydrogenase 4100337..4101764 Shewanella pealeana ATCC 700345 5663745 YP_001503208.1 CDS Spea_3358 NC_009901.1 4101787 4102359 D PFAM: regulatory protein TetR; KEGG: slo:Shew_3104 transcriptional regulator, TetR family; TetR family transcriptional regulator 4101787..4102359 Shewanella pealeana ATCC 700345 5663746 YP_001503209.1 CDS Spea_3360 NC_009901.1 4102730 4104094 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: slo:Shew_0727 integral membrane sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(4102730..4104094) Shewanella pealeana ATCC 700345 5664822 YP_001503210.1 CDS Spea_3361 NC_009901.1 4104098 4105627 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: slo:Shew_0726 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator complement(4104098..4105627) Shewanella pealeana ATCC 700345 5663748 YP_001503211.1 CDS Spea_3362 NC_009901.1 4105762 4106973 R PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_3157 protein of unknown function DUF214; hypothetical protein complement(4105762..4106973) Shewanella pealeana ATCC 700345 5663749 YP_001503212.1 CDS Spea_3363 NC_009901.1 4107001 4108302 R PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_3158 protein of unknown function DUF214; hypothetical protein complement(4107001..4108302) Shewanella pealeana ATCC 700345 5663750 YP_001503213.1 CDS Spea_3364 NC_009901.1 4108324 4109055 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbm:Shew185_0998 ABC transporter related; ABC transporter-like protein complement(4108324..4109055) Shewanella pealeana ATCC 700345 5663751 YP_001503214.1 CDS Spea_3365 NC_009901.1 4109473 4110735 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: slo:Shew_0721 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4109473..4110735) Shewanella pealeana ATCC 700345 5663752 YP_001503215.1 CDS Spea_3366 NC_009901.1 4111275 4112432 D PFAM: porin Gram-negative type; KEGG: slo:Shew_2283 porin, gram-negative type; porin 4111275..4112432 Shewanella pealeana ATCC 700345 5663753 YP_001503216.1 CDS Spea_3367 NC_009901.1 4112640 4114166 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: slo:Shew_2282 transcriptional regulator, fis family; response regulator receiver protein complement(4112640..4114166) Shewanella pealeana ATCC 700345 5663754 YP_001503217.1 CDS Spea_3368 NC_009901.1 4115174 4116733 D KEGG: slo:Shew_2281 flavocytochrome c; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; flavocytochrome c 4115174..4116733 Shewanella pealeana ATCC 700345 5663755 YP_001503218.1 CDS Spea_3369 NC_009901.1 4116764 4118449 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_2280 phenylalanine/histidine ammonia-lyase; phenylalanine/histidine ammonia-lyase 4116764..4118449 Shewanella pealeana ATCC 700345 5663756 YP_001503219.1 CDS Spea_3370 NC_009901.1 4118643 4119023 D KEGG: slo:Shew_2279 tetraheme cytochrome c; tetraheme cytochrome c 4118643..4119023 Shewanella pealeana ATCC 700345 5663757 YP_001503220.1 CDS Spea_3371 NC_009901.1 4119421 4119804 R KEGG: shn:Shewana3_3269 hypothetical protein; hypothetical protein complement(4119421..4119804) Shewanella pealeana ATCC 700345 5663758 YP_001503221.1 CDS Spea_3372 NC_009901.1 4120060 4120617 R KEGG: ppr:PBPRB0735 hypothetical protein; hypothetical protein complement(4120060..4120617) Shewanella pealeana ATCC 700345 5663759 YP_001503222.1 CDS Spea_3373 NC_009901.1 4120838 4121347 D KEGG: mma:MM_0051 hypothetical protein; hypothetical protein 4120838..4121347 Shewanella pealeana ATCC 700345 5663760 YP_001503223.1 CDS Spea_3374 NC_009901.1 4121391 4122227 R PFAM: periplasmic binding protein; KEGG: shn:Shewana3_3272 periplasmic binding protein; periplasmic-binding protein complement(4121391..4122227) Shewanella pealeana ATCC 700345 5663761 YP_001503224.1 CDS Spea_3375 NC_009901.1 4123161 4123682 R hypothetical protein complement(4123161..4123682) Shewanella pealeana ATCC 700345 5663762 YP_001503225.1 CDS Spea_3376 NC_009901.1 4123998 4124615 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(4123998..4124615) Shewanella pealeana ATCC 700345 5663763 YP_001503226.1 CDS Spea_3377 NC_009901.1 4124766 4126376 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(4124766..4126376) Shewanella pealeana ATCC 700345 5663764 YP_001503227.1 CDS Spea_3378 NC_009901.1 4126388 4126936 R PFAM: cobalbumin biosynthesis protein; KEGG: shn:Shewana3_3276 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein complement(4126388..4126936) Shewanella pealeana ATCC 700345 5663765 YP_001503228.1 CDS Spea_3379 NC_009901.1 4126933 4127712 R TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: son:SO_1036 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase complement(4126933..4127712) Shewanella pealeana ATCC 700345 5663766 YP_001503229.1 CDS cobT NC_009901.1 4128090 4129121 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(4128090..4129121) Shewanella pealeana ATCC 700345 5663767 YP_001503230.1 CDS Spea_3381 NC_009901.1 4129167 4130222 R PFAM: transport system permease protein; KEGG: slo:Shew_0713 transport system permease protein; transport system permease complement(4129167..4130222) Shewanella pealeana ATCC 700345 5663768 YP_001503231.1 CDS Spea_3382 NC_009901.1 4130215 4131141 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0712 ABC transporter-related protein; ABC transporter-like protein complement(4130215..4131141) Shewanella pealeana ATCC 700345 5663769 YP_001503232.1 CDS Spea_3383 NC_009901.1 4131919 4132533 R PFAM: Phosphoglycerate mutase; KEGG: slo:Shew_0711 phosphoglycerate mutase; phosphoglycerate mutase complement(4131919..4132533) Shewanella pealeana ATCC 700345 5663770 YP_001503233.1 CDS metH NC_009901.1 4132917 4136549 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4132917..4136549 Shewanella pealeana ATCC 700345 5663771 YP_001503234.1 CDS Spea_3385 NC_009901.1 4136672 4139404 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: saz:Sama_1252 TonB-dependent receptor; TonB-dependent receptor complement(4136672..4139404) Shewanella pealeana ATCC 700345 5663772 YP_001503235.1 CDS Spea_3386 NC_009901.1 4139622 4140368 R hypothetical protein complement(4139622..4140368) Shewanella pealeana ATCC 700345 5663773 YP_001503236.1 CDS Spea_3387 NC_009901.1 4140714 4141322 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(4140714..4141322) Shewanella pealeana ATCC 700345 5663774 YP_001503237.1 CDS Spea_3388 NC_009901.1 4141616 4142674 R KEGG: gfo:GFO_0080 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4141616..4142674) Shewanella pealeana ATCC 700345 5663775 YP_001503238.1 CDS Spea_3389 NC_009901.1 4142944 4143585 D hypothetical protein 4142944..4143585 Shewanella pealeana ATCC 700345 5663776 YP_001503239.1 CDS Spea_3390 NC_009901.1 4143630 4146215 D PFAM: MscS Mechanosensitive ion channel; KEGG: vvu:VV1_0007 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 4143630..4146215 Shewanella pealeana ATCC 700345 5663777 YP_001503240.1 CDS Spea_3391 NC_009901.1 4146436 4146708 D KEGG: sdn:Sden_0577 hypothetical protein; hypothetical protein 4146436..4146708 Shewanella pealeana ATCC 700345 5663778 YP_001503241.1 CDS Spea_3392 NC_009901.1 4147086 4148081 D catalyzes the formation of inosine from adenosine; adenosine deaminase 4147086..4148081 Shewanella pealeana ATCC 700345 5663779 YP_001503242.1 CDS Spea_3393 NC_009901.1 4148597 4148938 D PFAM: TM2 domain containing protein?; KEGG: ppd:Ppro_2995 TM2 domain containing protein+B7201; TM2 domain-containing protein 4148597..4148938 Shewanella pealeana ATCC 700345 5663780 YP_001503243.1 CDS Spea_3394 NC_009901.1 4149053 4150357 R KEGG: shn:Shewana3_0174 hypothetical protein; hypothetical protein complement(4149053..4150357) Shewanella pealeana ATCC 700345 5663781 YP_001503244.1 CDS Spea_3395 NC_009901.1 4150415 4151089 R PFAM: RDD domain containing protein; KEGG: shm:Shewmr7_2450 RDD domain containing protein; RDD domain-containing protein complement(4150415..4151089) Shewanella pealeana ATCC 700345 5663782 YP_001503245.1 CDS Spea_3397 NC_009901.1 4151994 4152731 D PFAM: extracellular solute-binding protein family 3; KEGG: son:SO_1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 4151994..4152731 Shewanella pealeana ATCC 700345 5664823 YP_001503246.1 CDS Spea_3398 NC_009901.1 4152739 4153419 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_3165 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 4152739..4153419 Shewanella pealeana ATCC 700345 5663784 YP_001503247.1 CDS Spea_3399 NC_009901.1 4153412 4154137 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3164 ABC transporter-related protein; ABC transporter-like protein 4153412..4154137 Shewanella pealeana ATCC 700345 5663785 YP_001503248.1 CDS Spea_3400 NC_009901.1 4154263 4155177 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: csa:Csal_1337 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4154263..4155177) Shewanella pealeana ATCC 700345 5663786 YP_001503249.1 CDS Spea_3401 NC_009901.1 4155333 4156553 D PFAM: S-adenosyl-L-homocysteine hydrolase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase/PNT domain protein; Acetohydroxy acid isomeroreductase catalytic domain protein; S-adenosyl-L-homocysteine hydrolase, NAD binding; KEGG: mja:MJ1388 S-adenosyl-L-homocysteine hydrolase; adenosylhomocysteinase 4155333..4156553 Shewanella pealeana ATCC 700345 5663787 YP_001503250.1 CDS Spea_3402 NC_009901.1 4156683 4157162 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: slo:Shew_0707 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4156683..4157162 Shewanella pealeana ATCC 700345 5663788 YP_001503251.1 CDS Spea_3403 NC_009901.1 4157423 4157941 D KEGG: shw:Sputw3181_2912 hypothetical protein; hypothetical protein 4157423..4157941 Shewanella pealeana ATCC 700345 5663789 YP_001503252.1 CDS Spea_3404 NC_009901.1 4158264 4158839 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: son:SO_4295 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 4158264..4158839 Shewanella pealeana ATCC 700345 5663790 YP_001503253.1 CDS Spea_3405 NC_009901.1 4158870 4160117 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO_4296 NupC family protein; Na+ dependent nucleoside transporter 4158870..4160117 Shewanella pealeana ATCC 700345 5663791 YP_001503254.1 CDS Spea_3406 NC_009901.1 4160440 4161102 D KEGG: ppr:PBPRB0398 hypothetical protein; putative periplasmic ligand-binding sensor protein 4160440..4161102 Shewanella pealeana ATCC 700345 5663792 YP_001503255.1 CDS Spea_3407 NC_009901.1 4161475 4163517 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4161475..4163517 Shewanella pealeana ATCC 700345 5663793 YP_001503256.1 CDS Spea_3408 NC_009901.1 4163596 4163961 R PFAM: protein of unknown function DUF805; KEGG: cte:CT1580 aminopeptidase C, putative; hypothetical protein complement(4163596..4163961) Shewanella pealeana ATCC 700345 5663794 YP_001503257.1 CDS Spea_3409 NC_009901.1 4164434 4168030 D hypothetical protein 4164434..4168030 Shewanella pealeana ATCC 700345 5663795 YP_001503258.1 CDS Spea_3410 NC_009901.1 4168141 4169985 R KEGG: fnu:FN2119 hypothetical exported 24-amino acid repeat protein; hypothetical protein complement(4168141..4169985) Shewanella pealeana ATCC 700345 5663796 YP_001503259.1 CDS Spea_3411 NC_009901.1 4170443 4171519 R PFAM: Choloylglycine hydrolase; KEGG: sdn:Sden_0442 choloylglycine hydrolase; choloylglycine hydrolase complement(4170443..4171519) Shewanella pealeana ATCC 700345 5663797 YP_001503260.1 CDS Spea_3412 NC_009901.1 4171620 4172660 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0443 GGDEF domain; diguanylate cyclase 4171620..4172660 Shewanella pealeana ATCC 700345 5663798 YP_001503261.1 CDS Spea_3413 NC_009901.1 4172886 4173182 D KEGG: sbm:Shew185_3407 hypothetical protein; hypothetical protein 4172886..4173182 Shewanella pealeana ATCC 700345 5663799 YP_001503262.1 CDS Spea_3414 NC_009901.1 4173340 4174641 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2195 NADH dehydrogenase; NADH dehydrogenase complement(4173340..4174641) Shewanella pealeana ATCC 700345 5663800 YP_001503263.1 CDS Spea_3415 NC_009901.1 4175059 4175442 D KEGG: vha:VIBHAR_04801 hypothetical protein; hypothetical protein 4175059..4175442 Shewanella pealeana ATCC 700345 5663801 YP_001503264.1 CDS Spea_3416 NC_009901.1 4175610 4176134 D hypothetical protein 4175610..4176134 Shewanella pealeana ATCC 700345 5663802 YP_001503265.1 CDS Spea_3417 NC_009901.1 4176241 4176768 R KEGG: sbm:Shew185_1422 lipoprotein, putative; putative lipoprotein complement(4176241..4176768) Shewanella pealeana ATCC 700345 5663803 YP_001503266.1 CDS Spea_3418 NC_009901.1 4176899 4177684 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_4378 helix-turn-helix-domain containing protein AraC type; AraC family transcriptional regulator complement(4176899..4177684) Shewanella pealeana ATCC 700345 5663804 YP_001503267.1 CDS Spea_3419 NC_009901.1 4177785 4179035 D PFAM: major facilitator superfamily MFS_1; KEGG: mms:mma_1047 transporter of the MFS superfamily; major facilitator transporter 4177785..4179035 Shewanella pealeana ATCC 700345 5663805 YP_001503268.1 CDS Spea_3420 NC_009901.1 4179110 4180168 R KEGG: ppr:PBPRB1341 hypothetical protein; hypothetical protein complement(4179110..4180168) Shewanella pealeana ATCC 700345 5663806 YP_001503269.1 CDS Spea_3421 NC_009901.1 4180221 4181288 R PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1340 putative secretion protein; secretion protein HlyD family protein complement(4180221..4181288) Shewanella pealeana ATCC 700345 5663807 YP_001503270.1 CDS Spea_3422 NC_009901.1 4181389 4182255 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1339 hypothetical transcriptional regulator; LysR family transcriptional regulator 4181389..4182255 Shewanella pealeana ATCC 700345 5663808 YP_001503271.1 CDS Spea_3423 NC_009901.1 4182331 4182795 R PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1874 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4182331..4182795) Shewanella pealeana ATCC 700345 5663809 YP_001503272.1 CDS Spea_3424 NC_009901.1 4182920 4185754 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: shw:Sputw3181_2351 TonB-dependent receptor; TonB-dependent receptor complement(4182920..4185754) Shewanella pealeana ATCC 700345 5663810 YP_001503273.1 CDS Spea_3425 NC_009901.1 4186107 4187489 R PFAM: Na+/H+ antiporter NhaC; KEGG: slo:Shew_0698 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(4186107..4187489) Shewanella pealeana ATCC 700345 5663811 YP_001503274.1 CDS Spea_3426 NC_009901.1 4187859 4188821 R KEGG: sbl:Sbal_3290 hypothetical protein; hypothetical protein complement(4187859..4188821) Shewanella pealeana ATCC 700345 5663812 YP_001503275.1 CDS Spea_3427 NC_009901.1 4189078 4190148 D PFAM: permease; KEGG: vha:VIBHAR_05267 hypothetical protein; permease 4189078..4190148 Shewanella pealeana ATCC 700345 5663813 YP_001503276.1 CDS Spea_3428 NC_009901.1 4190213 4191124 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF1072 transcriptional regulators, LysR family; LysR family transcriptional regulator complement(4190213..4191124) Shewanella pealeana ATCC 700345 5663814 YP_001503277.1 CDS Spea_3429 NC_009901.1 4191223 4192170 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2959 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4191223..4192170) Shewanella pealeana ATCC 700345 5663815 YP_001503278.1 CDS Spea_3430 NC_009901.1 4192692 4197641 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; protease-associated PA domain protein; KEGG: slo:Shew_0807 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 4192692..4197641 Shewanella pealeana ATCC 700345 5663816 YP_001503279.1 CDS Spea_3431 NC_009901.1 4197903 4198115 D PFAM: protein of unknown function DUF331; KEGG: slo:Shew_0695 protein of unknown function DUF331; hypothetical protein 4197903..4198115 Shewanella pealeana ATCC 700345 5663817 YP_001503280.1 CDS Spea_3432 NC_009901.1 4198175 4198702 R KEGG: mfa:Mfla_2466 hypothetical protein; hypothetical protein complement(4198175..4198702) Shewanella pealeana ATCC 700345 5663818 YP_001503281.1 CDS Spea_3433 NC_009901.1 4198741 4199619 R PFAM: 3'-5' exonuclease; KEGG: shm:Shewmr7_1014 3'-5' exonuclease; 3'-5' exonuclease complement(4198741..4199619) Shewanella pealeana ATCC 700345 5663819 YP_001503282.1 CDS Spea_3434 NC_009901.1 4199710 4200309 R hypothetical protein complement(4199710..4200309) Shewanella pealeana ATCC 700345 5663820 YP_001503283.1 CDS Spea_3435 NC_009901.1 4200542 4201819 D KEGG: shw:Sputw3181_2350 hypothetical protein; hypothetical protein 4200542..4201819 Shewanella pealeana ATCC 700345 5663821 YP_001503284.1 CDS Spea_3436 NC_009901.1 4202034 4202570 R KEGG: sfr:Sfri_3634 hypothetical protein; hypothetical protein complement(4202034..4202570) Shewanella pealeana ATCC 700345 5663822 YP_001503285.1 CDS Spea_3437 NC_009901.1 4202581 4203402 R KEGG: sfr:Sfri_3633 cytochrome c, putative; cytochrome c complement(4202581..4203402) Shewanella pealeana ATCC 700345 5663823 YP_001503286.1 CDS Spea_3438 NC_009901.1 4203857 4204609 D PFAM: transcriptional regulator domain protein; KEGG: sfr:Sfri_3632 response regulator receiver protein; winged helix family two component response transcriptional regulator 4203857..4204609 Shewanella pealeana ATCC 700345 5663824 YP_001503287.1 CDS Spea_3439 NC_009901.1 4204666 4205184 D KEGG: sfr:Sfri_3631 hypothetical protein; hypothetical protein 4204666..4205184 Shewanella pealeana ATCC 700345 5663825 YP_001503288.1 CDS Spea_3440 NC_009901.1 4205304 4206134 R KEGG: slo:Shew_0689 hypothetical protein; hypothetical protein complement(4205304..4206134) Shewanella pealeana ATCC 700345 5663826 YP_001503289.1 CDS Spea_3441 NC_009901.1 4206613 4207269 D PFAM: DSBA oxidoreductase; KEGG: sbm:Shew185_0941 DsbA oxidoreductase; DSBA oxidoreductase 4206613..4207269 Shewanella pealeana ATCC 700345 5663827 YP_001503290.1 CDS Spea_3442 NC_009901.1 4207352 4208365 R PFAM: glycosyl transferase group 1; KEGG: ana:all2291 glycosyltransferase; group 1 glycosyl transferase complement(4207352..4208365) Shewanella pealeana ATCC 700345 5663828 YP_001503291.1 CDS Spea_3443 NC_009901.1 4208569 4208961 R KEGG: spc:Sputcn32_0803 hypothetical protein; hypothetical protein complement(4208569..4208961) Shewanella pealeana ATCC 700345 5663829 YP_001503292.1 CDS Spea_3444 NC_009901.1 4209369 4210919 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4209369..4210919 Shewanella pealeana ATCC 700345 5663830 YP_001503293.1 CDS Spea_3445 NC_009901.1 4210948 4212420 D PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_0842 peptidase M16 domain protein; peptidase M16 domain-containing protein 4210948..4212420 Shewanella pealeana ATCC 700345 5663831 YP_001503294.1 CDS Spea_3446 NC_009901.1 4212420 4214021 D PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_0841 peptidase M16 domain protein; peptidase M16 domain-containing protein 4212420..4214021 Shewanella pealeana ATCC 700345 5663832 YP_001503295.1 CDS Spea_3447 NC_009901.1 4214219 4215232 D PFAM: StbA family protein; KEGG: ppr:PBPRA0050 hypothetical StbA plasmid stable inheritance protein; StbA family protein 4214219..4215232 Shewanella pealeana ATCC 700345 5663833 YP_001503296.1 CDS Spea_3448 NC_009901.1 4215242 4215982 D KEGG: ppr:PBPRA0051 hypothetical protein; hypothetical protein 4215242..4215982 Shewanella pealeana ATCC 700345 5663834 YP_001503297.1 CDS Spea_3449 NC_009901.1 4216206 4217531 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(4216206..4217531) Shewanella pealeana ATCC 700345 5663835 YP_001503298.1 CDS Spea_3450 NC_009901.1 4217550 4218887 R member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX complement(4217550..4218887) Shewanella pealeana ATCC 700345 5663836 YP_001503299.1 CDS Spea_3451 NC_009901.1 4219098 4220069 D regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 4219098..4220069 Shewanella pealeana ATCC 700345 5663837 YP_001503300.1 CDS Spea_3452 NC_009901.1 4220681 4221202 D KEGG: slo:Shew_0631 AFG1-family ATPase; ATPase-like protein 4220681..4221202 Shewanella pealeana ATCC 700345 5663838 YP_001503301.1 CDS Spea_3453 NC_009901.1 4221496 4222065 R hypothetical protein complement(4221496..4222065) Shewanella pealeana ATCC 700345 5663839 YP_001503302.1 CDS Spea_3454 NC_009901.1 4222148 4222978 R e14 prophage; cell death peptidase; inhibitor of T4 late gene expression; late inhibitor of T4; phage exclusion protein Lit complement(4222148..4222978) Shewanella pealeana ATCC 700345 5663840 YP_001503303.1 CDS Spea_3455 NC_009901.1 4223156 4223938 R KEGG: aba:Acid345_3545 hypothetical protein; hypothetical protein complement(4223156..4223938) Shewanella pealeana ATCC 700345 5663841 YP_001503304.1 CDS Spea_3456 NC_009901.1 4224105 4224530 R hypothetical protein complement(4224105..4224530) Shewanella pealeana ATCC 700345 5663842 YP_001503305.1 CDS Spea_3457 NC_009901.1 4225001 4225207 R PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein; XRE family transcriptional regulator complement(4225001..4225207) Shewanella pealeana ATCC 700345 5663843 YP_001503306.1 CDS Spea_3458 NC_009901.1 4225336 4225875 D KEGG: sbm:Shew185_4272 hypothetical protein; hypothetical protein 4225336..4225875 Shewanella pealeana ATCC 700345 5663844 YP_001503307.1 CDS Spea_3459 NC_009901.1 4225881 4227299 D PFAM: helicase domain protein; type III restriction protein res subunit; KEGG: sbm:Shew185_4273 type III restriction protein res subunit; type III restriction protein res subunit 4225881..4227299 Shewanella pealeana ATCC 700345 5663845 YP_001503308.1 CDS Spea_3460 NC_009901.1 4227454 4228266 R KEGG: shn:Shewana3_1253 hypothetical protein; hypothetical protein complement(4227454..4228266) Shewanella pealeana ATCC 700345 5663846 YP_001503309.1 CDS Spea_3461 NC_009901.1 4228606 4228884 R hypothetical protein complement(4228606..4228884) Shewanella pealeana ATCC 700345 5663847 YP_001503310.1 CDS Spea_3462 NC_009901.1 4230224 4230607 R hypothetical protein complement(4230224..4230607) Shewanella pealeana ATCC 700345 5663848 YP_001503311.1 CDS Spea_3463 NC_009901.1 4230609 4232651 R PFAM: integrase family protein; KEGG: vch:VC0183 hypothetical protein; integrase family protein complement(4230609..4232651) Shewanella pealeana ATCC 700345 5663849 YP_001503312.1 CDS Spea_3464 NC_009901.1 4232651 4235341 R hypothetical protein complement(4232651..4235341) Shewanella pealeana ATCC 700345 5663850 YP_001503313.1 CDS Spea_3465 NC_009901.1 4235342 4236721 R PFAM: integrase family protein; KEGG: spc:Sputcn32_0163 hypothetical protein; integrase family protein complement(4235342..4236721) Shewanella pealeana ATCC 700345 5663851 YP_001503314.1 CDS Spea_3466 NC_009901.1 4236894 4237751 D PFAM: AFG1-family ATPase; KEGG: slo:Shew_0631 AFG1-family ATPase; AFG1 family ATPase 4236894..4237751 Shewanella pealeana ATCC 700345 5663852 YP_001503315.1 CDS Spea_3467 NC_009901.1 4238253 4239269 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(4238253..4239269) Shewanella pealeana ATCC 700345 5663853 YP_001503316.1 CDS Spea_3468 NC_009901.1 4239548 4239817 D KEGG: sfr:Sfri_2004 hypothetical protein; hypothetical protein 4239548..4239817 Shewanella pealeana ATCC 700345 5663854 YP_001503317.1 CDS Spea_3469 NC_009901.1 4239880 4240752 D KEGG: mmz:MmarC7_1679 tetratricopeptide TPR_2 repeat protein; hypothetical protein 4239880..4240752 Shewanella pealeana ATCC 700345 5663855 YP_001503318.1 CDS Spea_3470 NC_009901.1 4240876 4241586 R hypothetical protein complement(4240876..4241586) Shewanella pealeana ATCC 700345 5663856 YP_001503319.1 CDS Spea_3471 NC_009901.1 4241872 4242384 R KEGG: bbt:BBta_4307 putative membrane protein of unknown function; hypothetical protein complement(4241872..4242384) Shewanella pealeana ATCC 700345 5663857 YP_001503320.1 CDS Spea_3472 NC_009901.1 4242371 4242817 R KEGG: vha:VIBHAR_01968 hypothetical protein; hypothetical protein complement(4242371..4242817) Shewanella pealeana ATCC 700345 5663858 YP_001503321.1 CDS Spea_3473 NC_009901.1 4243039 4243737 R hypothetical protein complement(4243039..4243737) Shewanella pealeana ATCC 700345 5663859 YP_001503322.1 CDS Spea_3474 NC_009901.1 4244682 4244936 D hypothetical protein 4244682..4244936 Shewanella pealeana ATCC 700345 5663860 YP_001503323.1 CDS Spea_3475 NC_009901.1 4245221 4245562 R KEGG: vvy:VV2395 hypothetical protein; hypothetical protein complement(4245221..4245562) Shewanella pealeana ATCC 700345 5663861 YP_001503324.1 CDS Spea_3476 NC_009901.1 4246047 4246826 R KEGG: cph:Cpha266_2334 lipase, class 3; hypothetical protein complement(4246047..4246826) Shewanella pealeana ATCC 700345 5663862 YP_001503325.1 CDS Spea_3477 NC_009901.1 4247054 4249912 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(4247054..4249912) Shewanella pealeana ATCC 700345 5663863 YP_001503326.1 CDS Spea_3478 NC_009901.1 4250254 4251213 D KEGG: slo:Shew_0627 hypothetical protein; hypothetical protein 4250254..4251213 Shewanella pealeana ATCC 700345 5663864 YP_001503327.1 CDS Spea_3479 NC_009901.1 4251227 4252126 D KEGG: slo:Shew_0626 protein of unknown function DUF350; hypothetical protein 4251227..4252126 Shewanella pealeana ATCC 700345 5663865 YP_001503328.1 CDS Spea_3480 NC_009901.1 4252242 4253969 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4252242..4253969 Shewanella pealeana ATCC 700345 5663866 YP_001503329.1 CDS Spea_3481 NC_009901.1 4254061 4254474 D KEGG: slo:Shew_0624 hypothetical protein; hypothetical protein 4254061..4254474 Shewanella pealeana ATCC 700345 5663867 YP_001503330.1 CDS Spea_3482 NC_009901.1 4254487 4255176 D PFAM: PspA/IM30 family protein; KEGG: sdn:Sden_0697 PspA/IM30; phage shock protein A 4254487..4255176 Shewanella pealeana ATCC 700345 5663868 YP_001503331.1 CDS Spea_3483 NC_009901.1 4255188 4255838 D KEGG: shm:Shewmr7_0857 hypothetical protein; hypothetical protein 4255188..4255838 Shewanella pealeana ATCC 700345 5663869 YP_001503332.1 CDS Spea_3484 NC_009901.1 4255955 4256284 D KEGG: slo:Shew_0621 hypothetical protein; hypothetical protein 4255955..4256284 Shewanella pealeana ATCC 700345 5663870 YP_001503333.1 CDS Spea_3485 NC_009901.1 4256343 4257140 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO_3768 ion transporter; Ion transport 2 domain-containing protein 4256343..4257140 Shewanella pealeana ATCC 700345 5663871 YP_001503334.1 CDS Spea_3486 NC_009901.1 4257245 4258732 R PFAM: adenylate cyclase; KEGG: slo:Shew_0619 adenylate cyclase; adenylate cyclase complement(4257245..4258732) Shewanella pealeana ATCC 700345 5663872 YP_001503335.1 CDS Spea_3487 NC_009901.1 4258965 4259645 D PFAM: protein of unknown function DUF47; KEGG: slo:Shew_0618 protein of unknown function DUF47; hypothetical protein 4258965..4259645 Shewanella pealeana ATCC 700345 5663873 YP_001503336.1 CDS Spea_3488 NC_009901.1 4259670 4260938 D PFAM: phosphate transporter; KEGG: slo:Shew_0617 phosphate transporter; phosphate transporter 4259670..4260938 Shewanella pealeana ATCC 700345 5663874 YP_001503337.1 CDS Spea_3489 NC_009901.1 4261131 4261676 D PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: slo:Shew_0616 SH3 domain protein; SH3 type 3 domain-containing protein 4261131..4261676 Shewanella pealeana ATCC 700345 5663875 YP_001503338.1 CDS Spea_3490 NC_009901.1 4262331 4265525 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 4262331..4265525 Shewanella pealeana ATCC 700345 5663876 YP_001503339.1 CDS Spea_3491 NC_009901.1 4265879 4267759 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA3375 putative methyl-accepting chemotaxis protein; Cache sensor containing methyl-accepting chemotaxis sensory transducer 4265879..4267759 Shewanella pealeana ATCC 700345 5663877 YP_001503340.1 CDS Spea_3492 NC_009901.1 4268076 4269956 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRA3375 putative methyl-accepting chemotaxis protein; Cache sensor containing methyl-accepting chemotaxis sensory transducer 4268076..4269956 Shewanella pealeana ATCC 700345 5663878 YP_001503341.1 CDS Spea_3493 NC_009901.1 4270023 4271762 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(4270023..4271762) Shewanella pealeana ATCC 700345 5663879 YP_001503342.1 CDS Spea_3494 NC_009901.1 4271762 4273627 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(4271762..4273627) Shewanella pealeana ATCC 700345 5663880 YP_001503343.1 CDS Spea_3495 NC_009901.1 4273937 4274278 R KEGG: slo:Shew_0605 hypothetical protein; hypothetical protein complement(4273937..4274278) Shewanella pealeana ATCC 700345 5663881 YP_001503344.1 CDS Spea_3496 NC_009901.1 4274483 4274683 R KEGG: sdn:Sden_1261 hypothetical protein; hypothetical protein complement(4274483..4274683) Shewanella pealeana ATCC 700345 5663882 YP_001503345.1 CDS Spea_3497 NC_009901.1 4275090 4276625 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: slo:Shew_0604 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 4275090..4276625 Shewanella pealeana ATCC 700345 5663883 YP_001503346.1 CDS Spea_3498 NC_009901.1 4276820 4278229 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(4276820..4278229) Shewanella pealeana ATCC 700345 5663884 YP_001503347.1 CDS Spea_3499 NC_009901.1 4278571 4279266 R KEGG: dvl:Dvul_0140 lipoprotein, putative; hypothetical protein complement(4278571..4279266) Shewanella pealeana ATCC 700345 5663885 YP_001503348.1 CDS Spea_3500 NC_009901.1 4279432 4279641 R PFAM: conserved hypothetical protein; KEGG: shw:Sputw3181_0827 hypothetical protein; hypothetical protein complement(4279432..4279641) Shewanella pealeana ATCC 700345 5663886 YP_001503349.1 CDS Spea_3501 NC_009901.1 4279723 4281693 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shw:Sputw3181_0826 ABC transporter related; ABC transporter-like protein 4279723..4281693 Shewanella pealeana ATCC 700345 5663887 YP_001503350.1 CDS Spea_3502 NC_009901.1 4281835 4282308 D PFAM: conserved hypothetical protein; KEGG: slo:Shew_0592 hypothetical protein; hypothetical protein 4281835..4282308 Shewanella pealeana ATCC 700345 5663888 YP_001503351.1 CDS Spea_3503 NC_009901.1 4282427 4284022 R PFAM: glucose-methanol-choline oxidoreductase; KEGG: slo:Shew_0591 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(4282427..4284022) Shewanella pealeana ATCC 700345 5663889 YP_001503352.1 CDS Spea_3504 NC_009901.1 4284204 4284722 R KEGG: slo:Shew_0590 hypothetical protein; hypothetical protein complement(4284204..4284722) Shewanella pealeana ATCC 700345 5663890 YP_001503353.1 CDS Spea_3505 NC_009901.1 4284889 4285869 D PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3286 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4284889..4285869 Shewanella pealeana ATCC 700345 5663891 YP_001503354.1 CDS Spea_3506 NC_009901.1 4285863 4286117 D PFAM: protein of unknown function UPF0270; KEGG: saz:Sama_3001 protein of unknown function UPF0270; hypothetical protein 4285863..4286117 Shewanella pealeana ATCC 700345 5663892 YP_001503355.1 CDS Spea_3507 NC_009901.1 4286248 4287135 D PFAM: phosphoribulokinase/uridine kinase; KEGG: slo:Shew_0587 phosphoribulokinase; phosphoribulokinase 4286248..4287135 Shewanella pealeana ATCC 700345 5663893 YP_001503356.1 CDS Spea_3508 NC_009901.1 4287870 4288652 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: sbl:Sbal_0579 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4287870..4288652) Shewanella pealeana ATCC 700345 5663894 YP_001503357.1 CDS Spea_3509 NC_009901.1 4289106 4289741 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4289106..4289741 Shewanella pealeana ATCC 700345 5663895 YP_001503358.1 CDS Spea_3510 NC_009901.1 4289849 4290157 D KEGG: shn:Shewana3_0616 hypothetical protein; hypothetical protein 4289849..4290157 Shewanella pealeana ATCC 700345 5663896 YP_001503359.1 CDS Spea_3511 NC_009901.1 4290267 4290941 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0583 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4290267..4290941 Shewanella pealeana ATCC 700345 5663897 YP_001503360.1 CDS Spea_3512 NC_009901.1 4290938 4292263 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0582 integral membrane sensor signal transduction histidine kinase; histidine kinase 4290938..4292263 Shewanella pealeana ATCC 700345 5663898 YP_001503361.1 CDS Spea_3513 NC_009901.1 4292335 4293135 R KEGG: shw:Sputw3181_3526 hypothetical protein; hypothetical protein complement(4292335..4293135) Shewanella pealeana ATCC 700345 5663899 YP_001503362.1 CDS astD NC_009901.1 4293558 4295018 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(4293558..4295018) Shewanella pealeana ATCC 700345 5663900 YP_001503363.1 CDS Spea_3515 NC_009901.1 4295028 4296047 R PFAM: arginine N-succinyltransferase beta subunit; KEGG: slo:Shew_0579 arginine N-succinyltransferase; arginine N-succinyltransferase complement(4295028..4296047) Shewanella pealeana ATCC 700345 5663901 YP_001503364.1 CDS argD NC_009901.1 4296183 4297400 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4296183..4297400) Shewanella pealeana ATCC 700345 5663902 YP_001503365.1 CDS Spea_3517 NC_009901.1 4298066 4299208 R PFAM: Metal-dependent hydrolase HDOD; KEGG: shn:Shewana3_0608 putative signal transduction protein; metal-dependent hydrolase HDOD complement(4298066..4299208) Shewanella pealeana ATCC 700345 5663903 YP_001503366.1 CDS Spea_3518 NC_009901.1 4299821 4302316 R PFAM: peptidase S15; peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: slo:Shew_0576 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(4299821..4302316) Shewanella pealeana ATCC 700345 5663904 YP_001503367.1 CDS Spea_3519 NC_009901.1 4303008 4303580 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: shn:Shewana3_0606 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase complement(4303008..4303580) Shewanella pealeana ATCC 700345 5663905 YP_001503368.1 CDS Spea_3520 NC_009901.1 4303710 4305074 R KEGG: dps:DP2970 hypothetical protein; hypothetical protein complement(4303710..4305074) Shewanella pealeana ATCC 700345 5663906 YP_001503369.1 CDS Spea_3521 NC_009901.1 4305077 4305715 R TIGRFAM: TonB family protein; KEGG: dps:DP2971 similar to TonB protein; TonB family protein complement(4305077..4305715) Shewanella pealeana ATCC 700345 5663907 YP_001503370.1 CDS Spea_3522 NC_009901.1 4305715 4306116 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dps:DP2972 biopolymer transport protein (ExbD2); biopolymer transport protein ExbD/TolR complement(4305715..4306116) Shewanella pealeana ATCC 700345 5663908 YP_001503371.1 CDS Spea_3523 NC_009901.1 4306109 4306627 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: vpa:VPA0153 TonB system transport protein ExbB2; MotA/TolQ/ExbB proton channel complement(4306109..4306627) Shewanella pealeana ATCC 700345 5663909 YP_001503372.1 CDS Spea_3524 NC_009901.1 4306614 4308023 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dps:DP2974 similar to transport protein TolQ; MotA/TolQ/ExbB proton channel complement(4306614..4308023) Shewanella pealeana ATCC 700345 5663910 YP_001503373.1 CDS Spea_3525 NC_009901.1 4308023 4308805 R KEGG: dps:DP2975 hypothetical protein; hypothetical protein complement(4308023..4308805) Shewanella pealeana ATCC 700345 5663911 YP_001503374.1 CDS Spea_3526 NC_009901.1 4308799 4309626 R KEGG: dps:DP2976 hypothetical protein; hypothetical protein complement(4308799..4309626) Shewanella pealeana ATCC 700345 5663912 YP_001503375.1 CDS Spea_3527 NC_009901.1 4309623 4310315 R KEGG: dps:DP2977 hypothetical protein; hypothetical protein complement(4309623..4310315) Shewanella pealeana ATCC 700345 5663913 YP_001503376.1 CDS Spea_3528 NC_009901.1 4310312 4311646 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP2978 related to iron (III) ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4310312..4311646) Shewanella pealeana ATCC 700345 5663914 YP_001503377.1 CDS Spea_3529 NC_009901.1 4311646 4312692 R PFAM: transport system permease protein; KEGG: dps:DP2979 probable iron (III) ABC transporter, permease protein; transport system permease complement(4311646..4312692) Shewanella pealeana ATCC 700345 5663915 YP_001503378.1 CDS Spea_3530 NC_009901.1 4312683 4313681 R PFAM: periplasmic binding protein; KEGG: dps:DP2980 probable iron (III) ABC transporter, periplasmic-binding protein; periplasmic-binding protein complement(4312683..4313681) Shewanella pealeana ATCC 700345 5663916 YP_001503379.1 CDS Spea_3531 NC_009901.1 4313691 4315727 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dps:DP2981 related to TonB dependent outer membrane receptor; TonB-dependent receptor plug complement(4313691..4315727) Shewanella pealeana ATCC 700345 5663917 YP_001503380.1 CDS Spea_3532 NC_009901.1 4316129 4316590 R PFAM: Stringent starvation protein B; KEGG: slo:Shew_0574 stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(4316129..4316590) Shewanella pealeana ATCC 700345 5663918 YP_001503381.1 CDS sspA NC_009901.1 4316590 4317219 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(4316590..4317219) Shewanella pealeana ATCC 700345 5663919 YP_001503382.1 CDS Spea_3534 NC_009901.1 4317329 4318024 R PFAM: cytochrome c1; KEGG: saz:Sama_3019 ubiquinol-cytochrome c reductase cytochrome c1 subunit; cytochrome c1 complement(4317329..4318024) Shewanella pealeana ATCC 700345 5663920 YP_001503383.1 CDS Spea_3535 NC_009901.1 4318024 4319238 R PFAM: Cytochrome b/b6 domain; KEGG: slo:Shew_0571 cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein complement(4318024..4319238) Shewanella pealeana ATCC 700345 5663921 YP_001503384.1 CDS Spea_3536 NC_009901.1 4319238 4319879 R KEGG: slo:Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(4319238..4319879) Shewanella pealeana ATCC 700345 5663922 YP_001503385.1 CDS Spea_3537 NC_009901.1 4320239 4321117 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shn:Shewana3_0600 HflC protein; HflC protein complement(4320239..4321117) Shewanella pealeana ATCC 700345 5663923 YP_001503386.1 CDS Spea_3538 NC_009901.1 4321121 4322272 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: sbm:Shew185_3765 HflK protein; HflK protein complement(4321121..4322272) Shewanella pealeana ATCC 700345 5663924 YP_001503387.1 CDS Spea_3539 NC_009901.1 4322322 4323617 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: slo:Shew_0567 GTP-binding protein, HSR1-related; small GTP-binding protein complement(4322322..4323617) Shewanella pealeana ATCC 700345 5663925 YP_001503388.1 CDS Spea_3540 NC_009901.1 4323638 4323916 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: slo:Shew_0566 RNA chaperone Hfq; RNA chaperone Hfq complement(4323638..4323916) Shewanella pealeana ATCC 700345 5663926 YP_001503389.1 CDS miaA NC_009901.1 4324010 4324900 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4324010..4324900) Shewanella pealeana ATCC 700345 5663927 YP_001503390.1 CDS mutL NC_009901.1 4324926 4326812 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(4324926..4326812) Shewanella pealeana ATCC 700345 5663928 YP_001503391.1 CDS Spea_3543 NC_009901.1 4326832 4328154 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: slo:Shew_0563 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(4326832..4328154) Shewanella pealeana ATCC 700345 5663929 YP_001503392.1 CDS Spea_3544 NC_009901.1 4328138 4328620 R PFAM: protein of unknown function UPF0079; KEGG: shn:Shewana3_0593 protein of unknown function UPF0079; hypothetical protein complement(4328138..4328620) Shewanella pealeana ATCC 700345 5663930 YP_001503393.1 CDS Spea_3545 NC_009901.1 4328695 4330173 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: spc:Sputcn32_3285 carbohydrate kinase, YjeF related protein; carbohydrate kinase complement(4328695..4330173) Shewanella pealeana ATCC 700345 5663931 YP_001503394.1 CDS Spea_3546 NC_009901.1 4330369 4330824 R KEGG: saz:Sama_3031 hypothetical protein; hypothetical protein complement(4330369..4330824) Shewanella pealeana ATCC 700345 5663932 YP_001503395.1 CDS Spea_3547 NC_009901.1 4332460 4333005 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(4332460..4333005) Shewanella pealeana ATCC 700345 5664829 YP_001503396.1 CDS Spea_3548 NC_009901.1 4333117 4334181 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4333117..4334181 Shewanella pealeana ATCC 700345 5663934 YP_001503397.1 CDS psd NC_009901.1 4334347 4335210 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4334347..4335210 Shewanella pealeana ATCC 700345 5663935 YP_001503398.1 CDS Spea_3550 NC_009901.1 4335226 4336104 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_0548 protein of unknown function DUF6, transmembrane; hypothetical protein 4335226..4336104 Shewanella pealeana ATCC 700345 5663936 YP_001503399.1 CDS Spea_3551 NC_009901.1 4336174 4339362 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_0555 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4336174..4339362 Shewanella pealeana ATCC 700345 5663937 YP_001503400.1 CDS Spea_3552 NC_009901.1 4339387 4340088 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: she:Shewmr4_0586 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4339387..4340088 Shewanella pealeana ATCC 700345 5663938 YP_001503401.1 CDS Spea_3553 NC_009901.1 4340168 4340512 R KEGG: son:SO_0586 hypothetical protein; hypothetical protein complement(4340168..4340512) Shewanella pealeana ATCC 700345 5663939 YP_001503402.1 CDS Spea_3554 NC_009901.1 4340562 4341488 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: slo:Shew_0553 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4340562..4341488 Shewanella pealeana ATCC 700345 5663940 YP_001503403.1 CDS Spea_3555 NC_009901.1 4341669 4341860 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: shn:Shewana3_0581 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 4341669..4341860 Shewanella pealeana ATCC 700345 5663941 YP_001503404.1 CDS Spea_3556 NC_009901.1 4342294 4344561 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(4342294..4344561) Shewanella pealeana ATCC 700345 5663942 YP_001503405.1 CDS Spea_3557 NC_009901.1 4344561 4345703 R KEGG: slo:Shew_0550 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase complement(4344561..4345703) Shewanella pealeana ATCC 700345 5663943 YP_001503406.1 CDS Spea_3558 NC_009901.1 4345741 4347636 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(4345741..4347636) Shewanella pealeana ATCC 700345 5663944 YP_001503407.1 CDS Spea_3559 NC_009901.1 4347683 4348255 R PFAM: protein of unknown function UPF0227; KEGG: slo:Shew_0548 protein of unknown function UPF0227; hypothetical protein complement(4347683..4348255) Shewanella pealeana ATCC 700345 5663945 YP_001503408.1 CDS Spea_3560 NC_009901.1 4348283 4349122 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: shm:Shewmr7_0756 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase domain-containing protein complement(4348283..4349122) Shewanella pealeana ATCC 700345 5663946 YP_001503409.1 CDS Spea_3561 NC_009901.1 4349144 4349578 R PFAM: protein of unknown function DUF1249; KEGG: shw:Sputw3181_3405 protein of unknown function DUF1249; hypothetical protein complement(4349144..4349578) Shewanella pealeana ATCC 700345 5663947 YP_001503410.1 CDS Spea_3562 NC_009901.1 4349626 4350237 R PFAM: NUDIX hydrolase; KEGG: slo:Shew_0545 ADP-ribose diphosphatase; NUDIX hydrolase complement(4349626..4350237) Shewanella pealeana ATCC 700345 5663948 YP_001503411.1 CDS tolC NC_009901.1 4350531 4351835 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 4350531..4351835 Shewanella pealeana ATCC 700345 5663949 YP_001503412.1 CDS Spea_3564 NC_009901.1 4351942 4352679 R KEGG: sbm:Shew185_0780 hypothetical protein; hypothetical protein complement(4351942..4352679) Shewanella pealeana ATCC 700345 5663950 YP_001503413.1 CDS Spea_3565 NC_009901.1 4352682 4353653 R KEGG: slo:Shew_0542 hypothetical protein; hypothetical protein complement(4352682..4353653) Shewanella pealeana ATCC 700345 5663951 YP_001503414.1 CDS Spea_3566 NC_009901.1 4353666 4354145 R PFAM: protein of unknown function DUF461; KEGG: spc:Sputcn32_0765 protein of unknown function DUF461; hypothetical protein complement(4353666..4354145) Shewanella pealeana ATCC 700345 5663952 YP_001503415.1 CDS Spea_3567 NC_009901.1 4354179 4354916 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shn:Shewana3_0721 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4354179..4354916 Shewanella pealeana ATCC 700345 5663953 YP_001503416.1 CDS Spea_3568 NC_009901.1 4355124 4355324 R PFAM: PspC domain protein; KEGG: slo:Shew_0538 phage shock protein C, PspC; phage shock protein C complement(4355124..4355324) Shewanella pealeana ATCC 700345 5663954 YP_001503417.1 CDS Spea_3569 NC_009901.1 4355453 4355758 R KEGG: slo:Shew_0537 hypothetical protein; hypothetical protein complement(4355453..4355758) Shewanella pealeana ATCC 700345 5663955 YP_001503418.1 CDS Spea_3570 NC_009901.1 4356098 4357084 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: slo:Shew_0536 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A complement(4356098..4357084) Shewanella pealeana ATCC 700345 5663956 YP_001503419.1 CDS Spea_3571 NC_009901.1 4357309 4358259 R PFAM: regulatory protein LysR; KEGG: shw:Sputw3181_3897 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4357309..4358259) Shewanella pealeana ATCC 700345 5663957 YP_001503420.1 CDS Spea_3572 NC_009901.1 4358243 4359220 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbl:Sbal_0179 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4358243..4359220) Shewanella pealeana ATCC 700345 5663958 YP_001503421.1 CDS Spea_3573 NC_009901.1 4359631 4361781 D KEGG: son:SO_1779 decaheme cytochrome c; decaheme cytochrome c 4359631..4361781 Shewanella pealeana ATCC 700345 5663959 YP_001503422.1 CDS Spea_3574 NC_009901.1 4362382 4364142 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; KEGG: shw:Sputw3181_0118 flavocytochrome c; flavocytochrome c complement(4362382..4364142) Shewanella pealeana ATCC 700345 5663960 YP_001503423.1 CDS Spea_3575 NC_009901.1 4364337 4366013 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: spc:Sputcn32_2431 phenylalanine/histidine ammonia-lyase; phenylalanine/histidine ammonia-lyase complement(4364337..4366013) Shewanella pealeana ATCC 700345 5663961 YP_001503424.1 CDS Spea_3576 NC_009901.1 4366442 4367662 R PFAM: histidine kinase A domain protein; KEGG: shn:Shewana3_4006 histidine kinase A domain protein; histidine kinase A domain-containing protein complement(4366442..4367662) Shewanella pealeana ATCC 700345 5663962 YP_001503425.1 CDS Spea_3577 NC_009901.1 4367649 4368323 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO_4623 DNA-binding response regulator; two component transcriptional regulator complement(4367649..4368323) Shewanella pealeana ATCC 700345 5663963 YP_001503426.1 CDS Spea_3578 NC_009901.1 4368327 4369094 R PFAM: regulatory protein LuxR; KEGG: son:SO_4624 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(4368327..4369094) Shewanella pealeana ATCC 700345 5663964 YP_001503427.1 CDS Spea_3579 NC_009901.1 4369592 4370854 R KEGG: slo:Shew_3276 hypothetical protein; hypothetical protein complement(4369592..4370854) Shewanella pealeana ATCC 700345 5663965 YP_001503428.1 CDS alr NC_009901.1 4370968 4372044 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(4370968..4372044) Shewanella pealeana ATCC 700345 5663966 YP_001503429.1 CDS Spea_3581 NC_009901.1 4372138 4373544 R KEGG: slo:Shew_3278 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(4372138..4373544) Shewanella pealeana ATCC 700345 5663967 YP_001503430.1 CDS Spea_3582 NC_009901.1 4373668 4375899 D KEGG: slo:Shew_3279 hypothetical protein; hypothetical protein 4373668..4375899 Shewanella pealeana ATCC 700345 5663968 YP_001503431.1 CDS rplI NC_009901.1 4376534 4376986 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(4376534..4376986) Shewanella pealeana ATCC 700345 5663969 YP_001503432.1 CDS rpsR NC_009901.1 4377014 4377241 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(4377014..4377241) Shewanella pealeana ATCC 700345 5663970 YP_001503433.1 CDS Spea_3585 NC_009901.1 4377253 4377558 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(4377253..4377558) Shewanella pealeana ATCC 700345 5663971 YP_001503434.1 CDS rpsF NC_009901.1 4377567 4377980 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(4377567..4377980) Shewanella pealeana ATCC 700345 5663972 YP_001503435.1 CDS Spea_3587 NC_009901.1 4378304 4379047 D PFAM: protein of unknown function DUF481; KEGG: sbm:Shew185_0710 protein of unknown function DUF481; hypothetical protein 4378304..4379047 Shewanella pealeana ATCC 700345 5663973 YP_001503436.1 CDS Spea_3588 NC_009901.1 4379122 4381209 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sfr:Sfri_3635 prolyl oligopeptidase; prolyl oligopeptidase complement(4379122..4381209) Shewanella pealeana ATCC 700345 5663974 YP_001503437.1 CDS Spea_3589 NC_009901.1 4381422 4382162 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(4381422..4382162) Shewanella pealeana ATCC 700345 5663975 YP_001503438.1 CDS Spea_3590 NC_009901.1 4382163 4384622 R KEGG: slo:Shew_3289 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(4382163..4384622) Shewanella pealeana ATCC 700345 5663976 YP_001503439.1 CDS Spea_3591 NC_009901.1 4384665 4385288 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3290 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4384665..4385288) Shewanella pealeana ATCC 700345 5663977 YP_001503440.1 CDS Spea_3592 NC_009901.1 4385473 4386768 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(4385473..4386768) Shewanella pealeana ATCC 700345 5663978 YP_001503441.1 CDS Spea_3593 NC_009901.1 4386835 4387023 R KEGG: slo:Shew_3292 hypothetical protein; hypothetical protein complement(4386835..4387023) Shewanella pealeana ATCC 700345 5663979 YP_001503442.1 CDS rpsI NC_009901.1 4387288 4387680 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4387288..4387680) Shewanella pealeana ATCC 700345 5663980 YP_001503443.1 CDS rplM NC_009901.1 4387695 4388126 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4387695..4388126) Shewanella pealeana ATCC 700345 5663981 YP_001503444.1 CDS Spea_3596 NC_009901.1 4388492 4389595 R PFAM: AFG1-family ATPase; KEGG: slo:Shew_3295 AFG1-family ATPase; AFG1 family ATPase complement(4388492..4389595) Shewanella pealeana ATCC 700345 5663982 YP_001503445.1 CDS Spea_3597 NC_009901.1 4389886 4390242 D hypothetical protein 4389886..4390242 Shewanella pealeana ATCC 700345 5663983 YP_001503446.1 CDS Spea_3598 NC_009901.1 4390475 4391830 D KEGG: slo:Shew_3296 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 4390475..4391830 Shewanella pealeana ATCC 700345 5663984 YP_001503447.1 CDS Spea_3599 NC_009901.1 4391967 4393049 D KEGG: son:SO_3943 protease DegS; TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; periplasmic serine protease DegS 4391967..4393049 Shewanella pealeana ATCC 700345 5663985 YP_001503448.1 CDS Spea_3600 NC_009901.1 4393686 4395356 R KEGG: ppd:Ppro_3498 hypothetical protein; hypothetical protein complement(4393686..4395356) Shewanella pealeana ATCC 700345 5663986 YP_001503449.1 CDS Spea_3601 NC_009901.1 4395511 4396185 R PFAM: response regulator receiver; KEGG: vha:VIBHAR_05158 hypothetical protein; response regulator receiver protein complement(4395511..4396185) Shewanella pealeana ATCC 700345 5663987 YP_001503450.1 CDS Spea_3602 NC_009901.1 4396185 4397579 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: vha:VIBHAR_05159 hypothetical protein; histidine kinase complement(4396185..4397579) Shewanella pealeana ATCC 700345 5663988 YP_001503451.1 CDS Spea_3603 NC_009901.1 4397724 4398986 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4397724..4398986) Shewanella pealeana ATCC 700345 5663989 YP_001503452.1 CDS Spea_3604 NC_009901.1 4399008 4399259 R PFAM: BolA family protein; KEGG: slo:Shew_3299 BolA family protein; BolA family protein complement(4399008..4399259) Shewanella pealeana ATCC 700345 5663990 YP_001503453.1 CDS Spea_3605 NC_009901.1 4399273 4399566 R KEGG: shn:Shewana3_0682 SpoIIAA family protein; SpoIIAA family protein complement(4399273..4399566) Shewanella pealeana ATCC 700345 5663991 YP_001503454.1 CDS Spea_3606 NC_009901.1 4399566 4400237 R PFAM: toluene tolerance family protein; KEGG: sbl:Sbal_3659 toluene tolerance family protein; toluene tolerance family protein complement(4399566..4400237) Shewanella pealeana ATCC 700345 5663992 YP_001503455.1 CDS Spea_3607 NC_009901.1 4400270 4400740 R PFAM: Mammalian cell entry related domain protein; KEGG: shw:Sputw3181_3450 mammalian cell entry related domain protein; hypothetical protein complement(4400270..4400740) Shewanella pealeana ATCC 700345 5663993 YP_001503456.1 CDS Spea_3608 NC_009901.1 4400813 4401598 R PFAM: protein of unknown function DUF140; KEGG: slo:Shew_3303 protein of unknown function DUF140; hypothetical protein complement(4400813..4401598) Shewanella pealeana ATCC 700345 5663994 YP_001503457.1 CDS Spea_3609 NC_009901.1 4401585 4402397 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3304 ABC transporter-related protein; ABC transporter-like protein complement(4401585..4402397) Shewanella pealeana ATCC 700345 5663995 YP_001503458.1 CDS Spea_3610 NC_009901.1 4402573 4403532 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: slo:Shew_3305 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4402573..4403532 Shewanella pealeana ATCC 700345 5663996 YP_001503459.1 CDS Spea_3611 NC_009901.1 4403579 4404556 D KEGG: slo:Shew_3306 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4403579..4404556 Shewanella pealeana ATCC 700345 5663997 YP_001503460.1 CDS Spea_3612 NC_009901.1 4404558 4405109 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4404558..4405109 Shewanella pealeana ATCC 700345 5663998 YP_001503461.1 CDS Spea_3613 NC_009901.1 4405106 4405663 D PFAM: protein of unknown function DUF1239; KEGG: slo:Shew_3308 protein of unknown function DUF1239; hypothetical protein 4405106..4405663 Shewanella pealeana ATCC 700345 5663999 YP_001503462.1 CDS Spea_3614 NC_009901.1 4405734 4406273 D TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; KEGG: slo:Shew_3309 OstA family protein; cell envelope biogenesis YhbN 4405734..4406273 Shewanella pealeana ATCC 700345 5664000 YP_001503463.1 CDS Spea_3615 NC_009901.1 4406270 4407001 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3310 ABC transporter-related protein; ABC transporter-like protein 4406270..4407001 Shewanella pealeana ATCC 700345 5664001 YP_001503464.1 CDS Spea_3616 NC_009901.1 4407138 4408601 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4407138..4408601 Shewanella pealeana ATCC 700345 5664002 YP_001503465.1 CDS Spea_3617 NC_009901.1 4408632 4408919 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: saz:Sama_3089 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30EA 4408632..4408919 Shewanella pealeana ATCC 700345 5664003 YP_001503466.1 CDS Spea_3618 NC_009901.1 4408922 4409365 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: slo:Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4408922..4409365 Shewanella pealeana ATCC 700345 5664004 YP_001503467.1 CDS Spea_3621 NC_009901.1 4410427 4410702 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: shw:Sputw3181_3462 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 4410427..4410702 Shewanella pealeana ATCC 700345 5664006 YP_001503468.1 CDS Spea_3622 NC_009901.1 4410799 4412163 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: slo:Shew_3316 magnesium transporter; magnesium transporter 4410799..4412163 Shewanella pealeana ATCC 700345 5664007 YP_001503469.1 CDS Spea_3623 NC_009901.1 4412232 4413035 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: slo:Shew_2687 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter periplasmic molybdate-binding protein complement(4412232..4413035) Shewanella pealeana ATCC 700345 5664008 YP_001503470.1 CDS Spea_3624 NC_009901.1 4413299 4413973 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: slo:Shew_0908 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(4413299..4413973) Shewanella pealeana ATCC 700345 5664009 YP_001503471.1 CDS Spea_3625 NC_009901.1 4414420 4414641 D KEGG: spc:Sputcn32_0707 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4414420..4414641 Shewanella pealeana ATCC 700345 5664010 YP_001503472.1 CDS Spea_3626 NC_009901.1 4414841 4416376 R KEGG: cps:CPS_0069 putative FG-GAP repeat lipoprotein; FG-GAP repeat-containing protein complement(4414841..4416376) Shewanella pealeana ATCC 700345 5664011 YP_001503473.1 CDS Spea_3627 NC_009901.1 4416487 4416837 R PFAM: GtrA family protein; GtrA family protein complement(4416487..4416837) Shewanella pealeana ATCC 700345 5664012 YP_001503474.1 CDS Spea_3628 NC_009901.1 4416924 4418363 R PFAM: glycosyl transferase family 39; KEGG: vha:VIBHAR_02790 hypothetical protein; glycosyl transferase family protein complement(4416924..4418363) Shewanella pealeana ATCC 700345 5664013 YP_001503475.1 CDS Spea_3629 NC_009901.1 4418363 4419400 R PFAM: glycosyl transferase family 2; KEGG: vha:VIBHAR_02791 hypothetical protein; glycosyl transferase family protein complement(4418363..4419400) Shewanella pealeana ATCC 700345 5664014 YP_001503476.1 CDS Spea_3630 NC_009901.1 4419509 4420210 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_3317 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4419509..4420210 Shewanella pealeana ATCC 700345 5664015 YP_001503477.1 CDS Spea_3631 NC_009901.1 4420213 4421562 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3318 integral membrane sensor signal transduction histidine kinase; histidine kinase 4420213..4421562 Shewanella pealeana ATCC 700345 5664016 YP_001503478.1 CDS Spea_3632 NC_009901.1 4421588 4422163 R PFAM: Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: slo:Shew_3323 lipase-like; PGAP1 family protein complement(4421588..4422163) Shewanella pealeana ATCC 700345 5664017 YP_001503479.1 CDS Spea_3633 NC_009901.1 4422365 4423417 D KEGG: sbl:Sbal_2332 hypothetical protein; hypothetical protein 4422365..4423417 Shewanella pealeana ATCC 700345 5664018 YP_001503480.1 CDS Spea_3634 NC_009901.1 4424025 4425194 D PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1259 transport protein of the major facilitator; major facilitator transporter 4424025..4425194 Shewanella pealeana ATCC 700345 5664019 YP_001503481.1 CDS rumB NC_009901.1 4425503 4426579 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 4425503..4426579 Shewanella pealeana ATCC 700345 5664020 YP_001503482.1 CDS Spea_3636 NC_009901.1 4426884 4427093 D PFAM: TOBE domain protein; KEGG: slo:Shew_3338 TOBE domain protein; TOBE domain-containing protein 4426884..4427093 Shewanella pealeana ATCC 700345 5664021 YP_001503483.1 CDS Spea_3637 NC_009901.1 4427213 4427536 R hypothetical protein complement(4427213..4427536) Shewanella pealeana ATCC 700345 5664022 YP_001503484.1 CDS Spea_3638 NC_009901.1 4427644 4428192 R KEGG: shw:Sputw3181_3482 hypothetical protein; hypothetical protein complement(4427644..4428192) Shewanella pealeana ATCC 700345 5664023 YP_001503485.1 CDS Spea_3639 NC_009901.1 4428195 4428485 R PFAM: protein of unknown function DUF134; KEGG: shw:Sputw3181_3483 protein of unknown function DUF134; hypothetical protein complement(4428195..4428485) Shewanella pealeana ATCC 700345 5664024 YP_001503486.1 CDS Spea_3640 NC_009901.1 4428728 4429324 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0677 putative dipeptide ABC transporter; ABC transporter-like protein complement(4428728..4429324) Shewanella pealeana ATCC 700345 5664025 YP_001503487.1 CDS Spea_3641 NC_009901.1 4429308 4430015 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0678 oligopeptide transport ATP-binding protein OppD; ABC transporter-like protein complement(4429308..4430015) Shewanella pealeana ATCC 700345 5664026 YP_001503488.1 CDS Spea_3642 NC_009901.1 4430009 4430839 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF0679 oligopeptide transport system permease protein OppC; binding-protein-dependent transport system inner membrane protein complement(4430009..4430839) Shewanella pealeana ATCC 700345 5664027 YP_001503489.1 CDS Spea_3643 NC_009901.1 4430832 4431809 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aha:AHA_2519 ABC nickel/di-oligopepetide transporter, permease subunit; binding-protein-dependent transport system inner membrane protein complement(4430832..4431809) Shewanella pealeana ATCC 700345 5664028 YP_001503490.1 CDS Spea_3644 NC_009901.1 4431806 4433338 R PFAM: extracellular solute-binding protein family 5; KEGG: vfi:VF0681 oligopeptide-binding protein OppA; extracellular solute-binding protein complement(4431806..4433338) Shewanella pealeana ATCC 700345 5664029 YP_001503491.1 CDS Spea_3645 NC_009901.1 4433525 4433935 D PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: ccv:CCV52592_1897 NikR C nickel binding domain family; CopG family transcriptional regulator 4433525..4433935 Shewanella pealeana ATCC 700345 5664030 YP_001503492.1 CDS Spea_3646 NC_009901.1 4434120 4434788 D PFAM: protein of unknown function DUF1275; KEGG: mmw:Mmwyl1_2095 protein of unknown function DUF1275; hypothetical protein 4434120..4434788 Shewanella pealeana ATCC 700345 5664031 YP_001503493.1 CDS Spea_3647 NC_009901.1 4434861 4435352 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ppr:PBPRA1266 putative peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(4434861..4435352) Shewanella pealeana ATCC 700345 5664032 YP_001503494.1 CDS Spea_3648 NC_009901.1 4435713 4437098 D PFAM: aminotransferase class V; KEGG: ppr:PBPRB0227 putative ScrA; class V aminotransferase 4435713..4437098 Shewanella pealeana ATCC 700345 5664033 YP_001503495.1 CDS Spea_3649 NC_009901.1 4437204 4439573 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ppr:PBPRB0229 hypothetical ScrC (sensory box/GGDEF familyprotein) (involved in swarmer cell regulation); diguanylate cyclase/phosphodiesterase complement(4437204..4439573) Shewanella pealeana ATCC 700345 5664034 YP_001503496.1 CDS Spea_3650 NC_009901.1 4439560 4440486 R SMART: extracellular solute-binding protein family 3; KEGG: ppr:PBPRB0228 putative ScrB; extracellular solute-binding protein complement(4439560..4440486) Shewanella pealeana ATCC 700345 5664035 YP_001503497.1 CDS Spea_3651 NC_009901.1 4440929 4442098 R catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase complement(4440929..4442098) Shewanella pealeana ATCC 700345 5664036 YP_001503498.1 CDS Spea_3652 NC_009901.1 4442100 4443581 R detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin complement(4442100..4443581) Shewanella pealeana ATCC 700345 5664037 YP_001503499.1 CDS Spea_3653 NC_009901.1 4443930 4445042 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(4443930..4445042) Shewanella pealeana ATCC 700345 5664038 YP_001503500.1 CDS Spea_3654 NC_009901.1 4445229 4446464 R PFAM: aminotransferase class I and II; KEGG: pcr:Pcryo_0738 aminotransferase, class I and II; class I/II aminotransferase complement(4445229..4446464) Shewanella pealeana ATCC 700345 5664039 YP_001503501.1 CDS Spea_3655 NC_009901.1 4446808 4448991 R PFAM: glycoside hydrolase family 18; Carbohydrate-binding family V/XII; SMART: chitinase II; KEGG: son:SO_4085 chitinase A; glycoside hydrolase family protein complement(4446808..4448991) Shewanella pealeana ATCC 700345 5664040 YP_001503502.1 CDS Spea_3656 NC_009901.1 4449202 4449489 R hypothetical protein complement(4449202..4449489) Shewanella pealeana ATCC 700345 5664041 YP_001503503.1 CDS Spea_3657 NC_009901.1 4449630 4449893 D KEGG: vvy:VVA1355 hypothetical protein; hypothetical protein 4449630..4449893 Shewanella pealeana ATCC 700345 5664042 YP_001503504.1 CDS Spea_3658 NC_009901.1 4449890 4450921 D KEGG: vvy:VVA1354 multidrug resistance efflux pump; multidrug resistance efflux pump 4449890..4450921 Shewanella pealeana ATCC 700345 5664043 YP_001503505.1 CDS Spea_3659 NC_009901.1 4451017 4451697 R KEGG: shn:Shewana3_0129 response regulator receiver protein; response regulator receiver protein complement(4451017..4451697) Shewanella pealeana ATCC 700345 5664044 YP_001503506.1 CDS Spea_3660 NC_009901.1 4451980 4452231 D KEGG: slo:Shew_0491 hypothetical protein; hypothetical protein 4451980..4452231 Shewanella pealeana ATCC 700345 5664045 YP_001503507.1 CDS Spea_3661 NC_009901.1 4452358 4453680 R KEGG: son:SO_1002 hypothetical protein; hypothetical protein complement(4452358..4453680) Shewanella pealeana ATCC 700345 5664046 YP_001503508.1 CDS Spea_3662 NC_009901.1 4454085 4455455 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: bha:BH0608 hypothetical protein; xanthine/uracil/vitamin C permease 4454085..4455455 Shewanella pealeana ATCC 700345 5664047 YP_001503509.1 CDS Spea_3663 NC_009901.1 4455524 4457056 R PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: aha:AHA_2651 inner membrane protein YoaE; integral membrane protein TerC complement(4455524..4457056) Shewanella pealeana ATCC 700345 5664048 YP_001503510.1 CDS Spea_3664 NC_009901.1 4457438 4460005 R KEGG: pin:Ping_2564 PKD domain containing protein; hypothetical protein complement(4457438..4460005) Shewanella pealeana ATCC 700345 5664049 YP_001503511.1 CDS Spea_3665 NC_009901.1 4460379 4461155 R KEGG: slo:Shew_0483 hypothetical protein; hypothetical protein complement(4460379..4461155) Shewanella pealeana ATCC 700345 5664050 YP_001503512.1 CDS Spea_3666 NC_009901.1 4461179 4462345 R KEGG: slo:Shew_0482 hypothetical protein; hypothetical protein complement(4461179..4462345) Shewanella pealeana ATCC 700345 5664051 YP_001503513.1 CDS Spea_3667 NC_009901.1 4462614 4465922 R PFAM: histidine kinase HAMP region domain protein; SMART: extracellular solute-binding protein family 3; metal-dependent phosphohydrolase HD region; KEGG: slo:Shew_3366 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4462614..4465922) Shewanella pealeana ATCC 700345 5664052 YP_001503514.1 CDS Spea_3668 NC_009901.1 4466206 4466487 D PFAM: protein of unknown function DUF1255; KEGG: maq:Maqu_2862 protein of unknown function DUF1255; hypothetical protein 4466206..4466487 Shewanella pealeana ATCC 700345 5664053 YP_001503515.1 CDS Spea_3669 NC_009901.1 4466598 4467002 R KEGG: slo:Shew_0481 hypothetical protein; hypothetical protein complement(4466598..4467002) Shewanella pealeana ATCC 700345 5664054 YP_001503516.1 CDS Spea_3670 NC_009901.1 4467090 4467386 R KEGG: ecc:c5321 putative conserved protein; hypothetical protein complement(4467090..4467386) Shewanella pealeana ATCC 700345 5664055 YP_001503517.1 CDS Spea_3671 NC_009901.1 4467837 4468493 R PFAM: pentapeptide repeat protein; KEGG: ppr:PBPRB0957 hypothetical protein; pentapeptide repeat-containing protein complement(4467837..4468493) Shewanella pealeana ATCC 700345 5664056 YP_001503518.1 CDS Spea_3672 NC_009901.1 4469014 4470873 D PFAM: chemotaxis sensory transducer; KEGG: vfi:VF1138 TcpI, toxin-coregulated pilus biosynthesis gene; methyl-accepting chemotaxis sensory transducer 4469014..4470873 Shewanella pealeana ATCC 700345 5664057 YP_001503519.1 CDS Spea_3673 NC_009901.1 4471189 4471545 D hypothetical protein 4471189..4471545 Shewanella pealeana ATCC 700345 5664058 YP_001503520.1 CDS Spea_3674 NC_009901.1 4471892 4473541 R PFAM: BCCT transporter; KEGG: vha:VIBHAR_06536 hypothetical protein; BCCT transporter complement(4471892..4473541) Shewanella pealeana ATCC 700345 5664059 YP_001503521.1 CDS Spea_3675 NC_009901.1 4473931 4474434 R KEGG: slo:Shew_2884 glycine cleavage system regulatory protein-like protein; glycine cleavage system regulatory protein-like protein complement(4473931..4474434) Shewanella pealeana ATCC 700345 5664060 YP_001503522.1 CDS Spea_3676 NC_009901.1 4475976 4478126 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: aha:AHA_0559 2',3'-cyclic-nucleotide 2'-phosphodiesterase; metallophosphoesterase 4475976..4478126 Shewanella pealeana ATCC 700345 5664061 YP_001503523.1 CDS Spea_3677 NC_009901.1 4478257 4479435 R KEGG: ppd:Ppro_2456 hypothetical protein; hypothetical protein complement(4478257..4479435) Shewanella pealeana ATCC 700345 5664062 YP_001503524.1 CDS Spea_3678 NC_009901.1 4479729 4480295 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: she:Shewmr4_3373 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 4479729..4480295 Shewanella pealeana ATCC 700345 5664063 YP_001503525.1 CDS Spea_3679 NC_009901.1 4480637 4481197 D hypothetical protein 4480637..4481197 Shewanella pealeana ATCC 700345 5664064 YP_001503526.1 CDS Spea_3680 NC_009901.1 4481199 4481636 D hypothetical protein 4481199..4481636 Shewanella pealeana ATCC 700345 5664065 YP_001503527.1 CDS Spea_3681 NC_009901.1 4481991 4482962 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(4481991..4482962) Shewanella pealeana ATCC 700345 5664066 YP_001503528.1 CDS Spea_3682 NC_009901.1 4482999 4483595 R PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_0135 protein of unknown function DUF1568; hypothetical protein complement(4482999..4483595) Shewanella pealeana ATCC 700345 5664067 YP_001503529.1 CDS Spea_3683 NC_009901.1 4483910 4484209 D hypothetical protein 4483910..4484209 Shewanella pealeana ATCC 700345 5664068 YP_001503530.1 CDS Spea_3684 NC_009901.1 4484231 4484401 R KEGG: son:SO_0115 hypothetical protein; hypothetical protein complement(4484231..4484401) Shewanella pealeana ATCC 700345 5664069 YP_001503531.1 CDS Spea_3685 NC_009901.1 4484795 4485856 D PFAM: NERD domain protein; KEGG: shn:Shewana3_0647 NERD domain protein; NERD domain-containing protein 4484795..4485856 Shewanella pealeana ATCC 700345 5664070 YP_001503532.1 CDS Spea_3686 NC_009901.1 4485983 4487062 D KEGG: vfi:VF2039 hypothetical protein; hypothetical protein 4485983..4487062 Shewanella pealeana ATCC 700345 5664071 YP_001503533.1 CDS Spea_3687 NC_009901.1 4487059 4487409 D KEGG: vfi:VF2040 hypothetical protein; hypothetical protein 4487059..4487409 Shewanella pealeana ATCC 700345 5664072 YP_001503534.1 CDS Spea_3688 NC_009901.1 4487609 4487944 D hypothetical protein 4487609..4487944 Shewanella pealeana ATCC 700345 5664073 YP_001503535.1 CDS groEL NC_009901.1 4488521 4490164 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4488521..4490164) Shewanella pealeana ATCC 700345 5664074 YP_001503536.1 CDS groES NC_009901.1 4490254 4490544 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4490254..4490544) Shewanella pealeana ATCC 700345 5664075 YP_001503537.1 CDS Spea_3691 NC_009901.1 4490794 4492155 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: slo:Shew_0470 MATE efflux family protein; MATE efflux family protein 4490794..4492155 Shewanella pealeana ATCC 700345 5664076 YP_001503538.1 CDS Spea_3692 NC_009901.1 4492257 4492913 D PFAM: pentapeptide repeat protein; KEGG: slo:Shew_0469 pentapeptide repeat protein; pentapeptide repeat-containing protein 4492257..4492913 Shewanella pealeana ATCC 700345 5664077 YP_001503539.1 CDS Spea_3693 NC_009901.1 4493083 4493481 D KEGG: slo:Shew_0465 hypothetical protein; hypothetical protein 4493083..4493481 Shewanella pealeana ATCC 700345 5664078 YP_001503540.1 CDS Spea_3694 NC_009901.1 4493594 4494544 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_0468 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4493594..4494544) Shewanella pealeana ATCC 700345 5664079 YP_001503541.1 CDS Spea_3695 NC_009901.1 4494740 4495822 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0467 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4494740..4495822 Shewanella pealeana ATCC 700345 5664080 YP_001503542.1 CDS Spea_3696 NC_009901.1 4495885 4498962 D PFAM: acriflavin resistance protein; KEGG: slo:Shew_0466 acriflavin resistance protein; acriflavin resistance protein 4495885..4498962 Shewanella pealeana ATCC 700345 5664081 YP_001503543.1 CDS Spea_3697 NC_009901.1 4499165 4499536 D KEGG: slo:Shew_0464 hypothetical protein; hypothetical protein 4499165..4499536 Shewanella pealeana ATCC 700345 5664082 YP_001503544.1 CDS Spea_3698 NC_009901.1 4499588 4499941 D KEGG: slo:Shew_0463 hypothetical protein; hypothetical protein 4499588..4499941 Shewanella pealeana ATCC 700345 5664083 YP_001503545.1 CDS Spea_3699 NC_009901.1 4500018 4500335 R KEGG: slo:Shew_0462 hypothetical protein; hypothetical protein complement(4500018..4500335) Shewanella pealeana ATCC 700345 5664084 YP_001503546.1 CDS Spea_3700 NC_009901.1 4500473 4500910 R KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein complement(4500473..4500910) Shewanella pealeana ATCC 700345 5664085 YP_001503547.1 CDS Spea_3701 NC_009901.1 4501060 4503465 R KEGG: slo:Shew_0460 hypothetical protein; hypothetical protein complement(4501060..4503465) Shewanella pealeana ATCC 700345 5664086 YP_001503548.1 CDS Spea_3702 NC_009901.1 4503657 4507361 R KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(4503657..4507361) Shewanella pealeana ATCC 700345 5664087 YP_001503549.1 CDS Spea_3703 NC_009901.1 4507542 4508936 R PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein PINc; KEGG: slo:Shew_0458 PhoH family protein; PhoH family protein complement(4507542..4508936) Shewanella pealeana ATCC 700345 5664088 YP_001503550.1 CDS Spea_3704 NC_009901.1 4509266 4512172 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4509266..4512172 Shewanella pealeana ATCC 700345 5664089 YP_001503551.1 CDS Spea_3705 NC_009901.1 4512299 4513237 D KEGG: slo:Shew_0456 hypothetical protein; hypothetical protein 4512299..4513237 Shewanella pealeana ATCC 700345 5664090 YP_001503552.1 CDS Spea_3706 NC_009901.1 4513295 4513693 D KEGG: mmw:Mmwyl1_3491 transposase; transposase 4513295..4513693 Shewanella pealeana ATCC 700345 5664091 YP_001503553.1 CDS Spea_3707 NC_009901.1 4513777 4514529 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3340 integrase, catalytic region; integrase catalytic subunit 4513777..4514529 Shewanella pealeana ATCC 700345 5664092 YP_001503554.1 CDS Spea_3708 NC_009901.1 4514577 4515137 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0455 uncharacterized protein UPF0114; hypothetical protein complement(4514577..4515137) Shewanella pealeana ATCC 700345 5664093 YP_001503555.1 CDS Spea_3709 NC_009901.1 4515241 4516047 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4515241..4516047) Shewanella pealeana ATCC 700345 5664094 YP_001503556.1 CDS Spea_3710 NC_009901.1 4516323 4517318 D PFAM: response regulator receiver; KEGG: slo:Shew_0453 response regulator receiver protein; MCP methylation inhibitor CheC 4516323..4517318 Shewanella pealeana ATCC 700345 5664095 YP_001503557.1 CDS Spea_3711 NC_009901.1 4517320 4518282 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_0452 diguanylate cyclase; diguanylate cyclase 4517320..4518282 Shewanella pealeana ATCC 700345 5664096 YP_001503558.1 CDS Spea_3712 NC_009901.1 4518384 4518797 R PFAM: protein of unknown function DUF1260; KEGG: sfr:Sfri_3513 protein of unknown function DUF1260; hypothetical protein complement(4518384..4518797) Shewanella pealeana ATCC 700345 5664097 YP_001503559.1 CDS Spea_3713 NC_009901.1 4518827 4519555 R KEGG: slo:Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(4518827..4519555) Shewanella pealeana ATCC 700345 5664098 YP_001503560.1 CDS Spea_3714 NC_009901.1 4519808 4520599 R PFAM: ABC-3 protein; KEGG: sbm:Shew185_3797 ABC-3 protein; ABC-3 protein complement(4519808..4520599) Shewanella pealeana ATCC 700345 5664099 YP_001503561.1 CDS Spea_3715 NC_009901.1 4520710 4521633 R PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute-binding protein complement(4520710..4521633) Shewanella pealeana ATCC 700345 5664100 YP_001503562.1 CDS Spea_3716 NC_009901.1 4521617 4522804 R KEGG: slo:Shew_0447 hypothetical protein; hypothetical protein complement(4521617..4522804) Shewanella pealeana ATCC 700345 5664101 YP_001503563.1 CDS Spea_3717 NC_009901.1 4522881 4523162 R KEGG: sbm:Shew185_3800 hypothetical protein; hypothetical protein complement(4522881..4523162) Shewanella pealeana ATCC 700345 5664102 YP_001503564.1 CDS Spea_3718 NC_009901.1 4523599 4523934 R KEGG: slo:Shew_0445 hypothetical protein; hypothetical protein complement(4523599..4523934) Shewanella pealeana ATCC 700345 5664103 YP_001503565.1 CDS Spea_3719 NC_009901.1 4524112 4525728 D PFAM: MscS Mechanosensitive ion channel; KEGG: slo:Shew_0444 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4524112..4525728 Shewanella pealeana ATCC 700345 5664104 YP_001503566.1 CDS Spea_3720 NC_009901.1 4525807 4527519 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(4525807..4527519) Shewanella pealeana ATCC 700345 5664105 YP_001503567.1 CDS Spea_3721 NC_009901.1 4528026 4528892 R PFAM: MaoC domain protein dehydratase; KEGG: shn:Shewana3_0558 MaoC domain protein dehydratase; dehydratase complement(4528026..4528892) Shewanella pealeana ATCC 700345 5664106 YP_001503568.1 CDS Spea_3722 NC_009901.1 4528997 4529881 R PFAM: GumN family protein; KEGG: slo:Shew_0438 GumN family protein; GumN family protein complement(4528997..4529881) Shewanella pealeana ATCC 700345 5664107 YP_001503569.1 CDS Spea_3723 NC_009901.1 4529927 4530238 D KEGG: slo:Shew_0437 hypothetical protein; hypothetical protein 4529927..4530238 Shewanella pealeana ATCC 700345 5664108 YP_001503570.1 CDS Spea_3724 NC_009901.1 4530343 4532085 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shn:Shewana3_0554 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4530343..4532085 Shewanella pealeana ATCC 700345 5664109 YP_001503571.1 CDS Spea_3725 NC_009901.1 4532149 4532673 R KEGG: sbm:Shew185_3811 hypothetical protein; hypothetical protein complement(4532149..4532673) Shewanella pealeana ATCC 700345 5664110 YP_001503572.1 CDS Spea_3726 NC_009901.1 4532953 4533258 D KEGG: slo:Shew_0434 hypothetical protein; hypothetical protein 4532953..4533258 Shewanella pealeana ATCC 700345 5664111 YP_001503573.1 CDS Spea_3727 NC_009901.1 4533559 4533867 D KEGG: slo:Shew_0433 hypothetical protein; hypothetical protein 4533559..4533867 Shewanella pealeana ATCC 700345 5664112 YP_001503574.1 CDS Spea_3728 NC_009901.1 4533981 4534490 R KEGG: sbm:Shew185_3814 hypothetical protein; hypothetical protein complement(4533981..4534490) Shewanella pealeana ATCC 700345 5664113 YP_001503575.1 CDS Spea_3729 NC_009901.1 4534657 4535052 D KEGG: slo:Shew_0431 hypothetical protein; hypothetical protein 4534657..4535052 Shewanella pealeana ATCC 700345 5664114 YP_001503576.1 CDS Spea_3730 NC_009901.1 4535148 4535945 D PFAM: response regulator receiver; KEGG: shw:Sputw3181_0617 response regulator receiver protein; response regulator receiver protein 4535148..4535945 Shewanella pealeana ATCC 700345 5664115 YP_001503577.1 CDS Spea_3731 NC_009901.1 4536082 4536354 D PFAM: histone family protein DNA-binding protein; KEGG: slo:Shew_0430 histone family protein DNA-binding protein; histone family protein DNA-binding protein 4536082..4536354 Shewanella pealeana ATCC 700345 5664116 YP_001503578.1 CDS Spea_3732 NC_009901.1 4536602 4537294 D PFAM: conserved hypothetical protein; KEGG: she:Shewmr4_0547 hypothetical protein; hypothetical protein 4536602..4537294 Shewanella pealeana ATCC 700345 5664117 YP_001503579.1 CDS Spea_3733 NC_009901.1 4537627 4537806 D KEGG: sbm:Shew185_3823 hypothetical protein; hypothetical protein 4537627..4537806 Shewanella pealeana ATCC 700345 5664118 YP_001503580.1 CDS Spea_3734 NC_009901.1 4537898 4539277 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: slo:Shew_0424 amino acid carrier protein; amino acid carrier protein complement(4537898..4539277) Shewanella pealeana ATCC 700345 5664119 YP_001503581.1 CDS Spea_3735 NC_009901.1 4539764 4540978 R PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_3494 major facilitator superfamily MFS_1; major facilitator transporter complement(4539764..4540978) Shewanella pealeana ATCC 700345 5664120 YP_001503582.1 CDS Spea_3736 NC_009901.1 4541128 4542141 R KEGG: spc:Sputcn32_3815 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(4541128..4542141) Shewanella pealeana ATCC 700345 5664121 YP_001503583.1 CDS Spea_3737 NC_009901.1 4542253 4543290 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: slo:Shew_0418 arsenical-resistance protein; arsenical-resistance protein complement(4542253..4543290) Shewanella pealeana ATCC 700345 5664122 YP_001503584.1 CDS Spea_3738 NC_009901.1 4543336 4543686 R PFAM: regulatory protein ArsR; KEGG: shm:Shewmr7_3499 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(4543336..4543686) Shewanella pealeana ATCC 700345 5664123 YP_001503585.1 CDS Spea_3739 NC_009901.1 4543915 4545162 D PFAM: PGAP1 family protein; KEGG: azo:azo0052 hypothetical secreted protein; PGAP1 family protein 4543915..4545162 Shewanella pealeana ATCC 700345 5664124 YP_001503586.1 CDS Spea_3740 NC_009901.1 4545683 4547065 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sbm:Shew185_0512 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(4545683..4547065) Shewanella pealeana ATCC 700345 5664125 YP_001503587.1 CDS Spea_3741 NC_009901.1 4547231 4547773 D PFAM: protein of unknown function DUF615; KEGG: slo:Shew_0415 protein of unknown function DUF615; hypothetical protein 4547231..4547773 Shewanella pealeana ATCC 700345 5664126 YP_001503588.1 CDS Spea_3742 NC_009901.1 4547931 4550486 D PFAM: Ig domain protein group 1 domain protein; KEGG: sbl:Sbal_3807 Ig domain protein, group 1 domain protein; Ig domain-containing protein 4547931..4550486 Shewanella pealeana ATCC 700345 5664127 YP_001503589.1 CDS Spea_3743 NC_009901.1 4551044 4552198 R PFAM: ABC-2 type transporter; KEGG: son:SO_4087 conserved hypothetical protein; ABC-2 type transporter complement(4551044..4552198) Shewanella pealeana ATCC 700345 5664128 YP_001503590.1 CDS Spea_3744 NC_009901.1 4552200 4553363 R PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3462 ABC-2 type transporter; ABC-2 type transporter complement(4552200..4553363) Shewanella pealeana ATCC 700345 5664129 YP_001503591.1 CDS Spea_3745 NC_009901.1 4553394 4554365 R PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_3639 secretion protein HlyD family protein; secretion protein HlyD family protein complement(4553394..4554365) Shewanella pealeana ATCC 700345 5664130 YP_001503592.1 CDS Spea_3746 NC_009901.1 4554355 4555746 R PFAM: outer membrane efflux protein; KEGG: slo:Shew_0411 outer membrane efflux protein; outer membrane efflux protein complement(4554355..4555746) Shewanella pealeana ATCC 700345 5664131 YP_001503593.1 CDS Spea_3747 NC_009901.1 4555864 4557345 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: slo:Shew_0410 peptidase U62, modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase complement(4555864..4557345) Shewanella pealeana ATCC 700345 5664132 YP_001503594.1 CDS Spea_3748 NC_009901.1 4557422 4558261 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spc:Sputcn32_0580 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4557422..4558261) Shewanella pealeana ATCC 700345 5664133 YP_001503595.1 CDS Spea_3749 NC_009901.1 4558185 4562504 R KEGG: slo:Shew_0408 hypothetical protein; hypothetical protein complement(4558185..4562504) Shewanella pealeana ATCC 700345 5664134 YP_001503596.1 CDS Spea_3750 NC_009901.1 4562504 4564012 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4562504..4564012) Shewanella pealeana ATCC 700345 5664135 YP_001503597.1 CDS Spea_3751 NC_009901.1 4564171 4564767 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: slo:Shew_0406 maf protein; maf protein complement(4564171..4564767) Shewanella pealeana ATCC 700345 5664136 YP_001503598.1 CDS Spea_3752 NC_009901.1 4564847 4565335 R PFAM: Rod shape-determining protein MreD; KEGG: slo:Shew_0405 rod shape-determining protein MreD; rod shape-determining protein MreD complement(4564847..4565335) Shewanella pealeana ATCC 700345 5664137 YP_001503599.1 CDS Spea_3753 NC_009901.1 4565332 4566219 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4565332..4566219) Shewanella pealeana ATCC 700345 5664138 YP_001503600.1 CDS Spea_3754 NC_009901.1 4566261 4567310 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4566261..4567310) Shewanella pealeana ATCC 700345 5664139 YP_001503601.1 CDS Spea_3755 NC_009901.1 4567483 4571631 R SMART: PA14-related domain protein; KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ; PA14 domain-containing protein complement(4567483..4571631) Shewanella pealeana ATCC 700345 5664140 YP_001503602.1 CDS Spea_3756 NC_009901.1 4571624 4572124 R KEGG: slo:Shew_0401 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP complement(4571624..4572124) Shewanella pealeana ATCC 700345 5664141 YP_001503603.1 CDS Spea_3757 NC_009901.1 4572114 4573001 R KEGG: slo:Shew_0400 methylation site containing protein; methylation site containing protein complement(4572114..4573001) Shewanella pealeana ATCC 700345 5664142 YP_001503604.1 CDS Spea_3758 NC_009901.1 4573001 4573576 R KEGG: shw:Sputw3181_3602 methylation site containing protein; methylation site containing protein complement(4573001..4573576) Shewanella pealeana ATCC 700345 5664143 YP_001503605.1 CDS Spea_3759 NC_009901.1 4573563 4574039 R KEGG: spc:Sputcn32_0569 MSHA pilin protein MshC; MSHA pilin protein MshC complement(4573563..4574039) Shewanella pealeana ATCC 700345 5664144 YP_001503606.1 CDS Spea_3760 NC_009901.1 4574362 4574892 R KEGG: shm:Shewmr7_0473 methylation site containing protein; methylation site containing protein complement(4574362..4574892) Shewanella pealeana ATCC 700345 5664145 YP_001503607.1 CDS Spea_3761 NC_009901.1 4574913 4575449 R KEGG: son:SO_4105 MSHA pilin protein MshA; MSHA pilin protein MshA complement(4574913..4575449) Shewanella pealeana ATCC 700345 5664146 YP_001503608.1 CDS Spea_3762 NC_009901.1 4575587 4576195 R KEGG: shn:Shewana3_3657 methylation site containing protein; methylation site containing protein complement(4575587..4576195) Shewanella pealeana ATCC 700345 5664147 YP_001503609.1 CDS Spea_3763 NC_009901.1 4576275 4576766 R KEGG: shn:Shewana3_3658 hypothetical protein; hypothetical protein complement(4576275..4576766) Shewanella pealeana ATCC 700345 5664148 YP_001503610.1 CDS Spea_3764 NC_009901.1 4576785 4578005 R PFAM: type II secretion system protein; KEGG: shw:Sputw3181_3608 type II secretion system protein; type II secretion system protein complement(4576785..4578005) Shewanella pealeana ATCC 700345 5664149 YP_001503611.1 CDS Spea_3765 NC_009901.1 4578008 4579741 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: slo:Shew_0392 type II secretion system protein E; type II secretion system protein E complement(4578008..4579741) Shewanella pealeana ATCC 700345 5664150 YP_001503612.1 CDS Spea_3766 NC_009901.1 4579741 4581027 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_3484 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(4579741..4581027) Shewanella pealeana ATCC 700345 5664151 YP_001503613.1 CDS Spea_3767 NC_009901.1 4581024 4581932 R KEGG: sbm:Shew185_0485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM complement(4581024..4581932) Shewanella pealeana ATCC 700345 5664152 YP_001503614.1 CDS Spea_3768 NC_009901.1 4581935 4583605 R TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain; KEGG: slo:Shew_0389 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL complement(4581935..4583605) Shewanella pealeana ATCC 700345 5664153 YP_001503615.1 CDS Spea_3769 NC_009901.1 4583607 4583945 R KEGG: shn:Shewana3_3664 MSHA biogenesis protein MshK; hypothetical protein complement(4583607..4583945) Shewanella pealeana ATCC 700345 5664154 YP_001503616.1 CDS Spea_3770 NC_009901.1 4583926 4584582 R KEGG: slo:Shew_0387 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ complement(4583926..4584582) Shewanella pealeana ATCC 700345 5664155 YP_001503617.1 CDS Spea_3771 NC_009901.1 4584579 4585187 R PFAM: Fimbrial assembly family protein; KEGG: slo:Shew_0386 fimbrial assembly family protein; fimbrial assembly family protein complement(4584579..4585187) Shewanella pealeana ATCC 700345 5664156 YP_001503618.1 CDS Spea_3772 NC_009901.1 4585184 4586065 R KEGG: sbm:Shew185_0480 conserved hypothetical biogenesis protein MshI; biogenesis protein MshI complement(4585184..4586065) Shewanella pealeana ATCC 700345 5664157 YP_001503619.1 CDS Spea_3773 NC_009901.1 4586457 4588364 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(4586457..4588364) Shewanella pealeana ATCC 700345 5664158 YP_001503620.1 CDS Spea_3774 NC_009901.1 4588590 4589840 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: slo:Shew_0383 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase complement(4588590..4589840) Shewanella pealeana ATCC 700345 5664159 YP_001503621.1 CDS Spea_3775 NC_009901.1 4590045 4590818 R PFAM: nuclease (SNase domain protein); KEGG: slo:Shew_0382 nuclease (SNase domain protein); nuclease complement(4590045..4590818) Shewanella pealeana ATCC 700345 5664160 YP_001503622.1 CDS rpmE NC_009901.1 4591015 4591227 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(4591015..4591227) Shewanella pealeana ATCC 700345 5664161 YP_001503623.1 CDS Spea_3777 NC_009901.1 4591447 4592175 R KEGG: slo:Shew_0380 hypothetical protein; hypothetical protein complement(4591447..4592175) Shewanella pealeana ATCC 700345 5664162 YP_001503624.1 CDS Spea_3778 NC_009901.1 4592443 4594638 D KEGG: slo:Shew_0379 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 4592443..4594638 Shewanella pealeana ATCC 700345 5664163 YP_001503625.1 CDS argS NC_009901.1 4594763 4596508 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4594763..4596508 Shewanella pealeana ATCC 700345 5664164 YP_001503626.1 CDS Spea_3780 NC_009901.1 4596519 4597094 D PFAM: Sporulation domain protein; KEGG: slo:Shew_0377 sporulation domain protein; sporulation domain-containing protein 4596519..4597094 Shewanella pealeana ATCC 700345 5664165 YP_001503627.1 CDS Spea_3781 NC_009901.1 4597245 4597769 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4597245..4597769 Shewanella pealeana ATCC 700345 5664166 YP_001503628.1 CDS hslU NC_009901.1 4597819 4599144 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4597819..4599144 Shewanella pealeana ATCC 700345 5664167 YP_001503629.1 CDS Spea_3783 NC_009901.1 4599274 4599669 D PFAM: protein of unknown function DUF971; KEGG: slo:Shew_0373 protein of unknown function DUF971; hypothetical protein 4599274..4599669 Shewanella pealeana ATCC 700345 5664168 YP_001503630.1 CDS Spea_3784 NC_009901.1 4599888 4600592 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4599888..4600592 Shewanella pealeana ATCC 700345 5664169 YP_001503631.1 CDS Spea_3785 NC_009901.1 4600689 4601861 D PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_2502 major facilitator superfamily MFS_1; hypothetical protein 4600689..4601861 Shewanella pealeana ATCC 700345 5664170 YP_001503632.1 CDS Spea_3786 NC_009901.1 4602071 4602742 R PFAM: cyclic nucleotide-binding; KEGG: shn:Shewana3_2501 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(4602071..4602742) Shewanella pealeana ATCC 700345 5664171 YP_001503633.1 CDS Spea_3787 NC_009901.1 4602924 4603979 R KEGG: sbm:Shew185_0424 hypothetical protein; hypothetical protein complement(4602924..4603979) Shewanella pealeana ATCC 700345 5664172 YP_001503634.1 CDS Spea_3788 NC_009901.1 4603988 4604497 R PFAM: phosphoesterase PA-phosphatase related; KEGG: shn:Shewana3_3721 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(4603988..4604497) Shewanella pealeana ATCC 700345 5664173 YP_001503635.1 CDS Spea_3789 NC_009901.1 4604704 4604955 R KEGG: slo:Shew_3369 hypothetical protein; hypothetical protein complement(4604704..4604955) Shewanella pealeana ATCC 700345 5664174 YP_001503636.1 CDS Spea_3790 NC_009901.1 4605294 4605779 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4605294..4605779 Shewanella pealeana ATCC 700345 5664175 YP_001503637.1 CDS Spea_3791 NC_009901.1 4605923 4606957 D PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: slo:Shew_3372 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 4605923..4606957 Shewanella pealeana ATCC 700345 5664176 YP_001503638.1 CDS Spea_3792 NC_009901.1 4607161 4607916 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_3373 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 4607161..4607916 Shewanella pealeana ATCC 700345 5664177 YP_001503639.1 CDS Spea_3793 NC_009901.1 4607928 4608551 D PFAM: Sterol-binding domain protein; KEGG: slo:Shew_3374 protein of unknown function DUF1243; sterol-binding domain-containing protein 4607928..4608551 Shewanella pealeana ATCC 700345 5664178 YP_001503640.1 CDS Spea_3794 NC_009901.1 4608548 4610197 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: slo:Shew_3375 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 4608548..4610197 Shewanella pealeana ATCC 700345 5664179 YP_001503641.1 CDS Spea_3795 NC_009901.1 4610258 4610527 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: slo:Shew_3376 twin-arginine translocation protein, TatA/E family subunit; twin arginine-targeting protein translocase 4610258..4610527 Shewanella pealeana ATCC 700345 5664180 YP_001503642.1 CDS Spea_3796 NC_009901.1 4610534 4610929 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: slo:Shew_3377 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 4610534..4610929 Shewanella pealeana ATCC 700345 5664181 YP_001503643.1 CDS Spea_3797 NC_009901.1 4610933 4611694 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: slo:Shew_3378 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4610933..4611694 Shewanella pealeana ATCC 700345 5664182 YP_001503644.1 CDS Spea_3798 NC_009901.1 4611885 4612388 D KEGG: shm:Shewmr7_0399 hypothetical protein; hypothetical protein 4611885..4612388 Shewanella pealeana ATCC 700345 5664183 YP_001503645.1 CDS Spea_3799 NC_009901.1 4612388 4613182 D PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease 4612388..4613182 Shewanella pealeana ATCC 700345 5664184 YP_001503646.1 CDS Spea_3800 NC_009901.1 4613182 4615047 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: slo:Shew_3381 diguanylate cyclase; diguanylate cyclase 4613182..4615047 Shewanella pealeana ATCC 700345 5664185 YP_001503647.1 CDS Spea_3801 NC_009901.1 4615072 4616082 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4615072..4616082 Shewanella pealeana ATCC 700345 5664186 YP_001503648.1 CDS Spea_3803 NC_009901.1 4623827 4626550 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4623827..4626550) Shewanella pealeana ATCC 700345 5664835 YP_001503649.1 CDS Spea_3804 NC_009901.1 4626611 4627510 R PFAM: peptidase M23B; KEGG: slo:Shew_3446 peptidase M23B; peptidase M23B complement(4626611..4627510) Shewanella pealeana ATCC 700345 5664188 YP_001503650.1 CDS Spea_3805 NC_009901.1 4627538 4627990 D KEGG: slo:Shew_3447 hypothetical protein; hypothetical protein 4627538..4627990 Shewanella pealeana ATCC 700345 5664189 YP_001503651.1 CDS lpxC NC_009901.1 4627998 4628918 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4627998..4628918) Shewanella pealeana ATCC 700345 5664190 YP_001503652.1 CDS Spea_3807 NC_009901.1 4629096 4630283 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4629096..4630283) Shewanella pealeana ATCC 700345 5664191 YP_001503653.1 CDS Spea_3808 NC_009901.1 4630315 4631550 R PFAM: cell division protein FtsA; KEGG: slo:Shew_3450 cell division protein FtsA; cell division protein FtsA complement(4630315..4631550) Shewanella pealeana ATCC 700345 5664192 YP_001503654.1 CDS Spea_3809 NC_009901.1 4631554 4632342 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: slo:Shew_3451 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein complement(4631554..4632342) Shewanella pealeana ATCC 700345 5664193 YP_001503655.1 CDS murC NC_009901.1 4632424 4633893 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4632424..4633893) Shewanella pealeana ATCC 700345 5664194 YP_001503656.1 CDS murG NC_009901.1 4633895 4634992 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4633895..4634992) Shewanella pealeana ATCC 700345 5664195 YP_001503657.1 CDS Spea_3812 NC_009901.1 4635004 4636221 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: slo:Shew_3454 cell division protein FtsW; cell division protein FtsW complement(4635004..4636221) Shewanella pealeana ATCC 700345 5664196 YP_001503658.1 CDS murD NC_009901.1 4636211 4637530 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4636211..4637530) Shewanella pealeana ATCC 700345 5664197 YP_001503659.1 CDS mraY NC_009901.1 4637581 4638663 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4637581..4638663) Shewanella pealeana ATCC 700345 5664198 YP_001503660.1 CDS Spea_3815 NC_009901.1 4638663 4640042 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: son:SO_4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(4638663..4640042) Shewanella pealeana ATCC 700345 5664199 YP_001503661.1 CDS murE NC_009901.1 4640039 4641505 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4640039..4641505) Shewanella pealeana ATCC 700345 5664200 YP_001503662.1 CDS Spea_3817 NC_009901.1 4641505 4643241 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: slo:Shew_3459 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(4641505..4643241) Shewanella pealeana ATCC 700345 5664201 YP_001503663.1 CDS Spea_3818 NC_009901.1 4643238 4643552 R PFAM: cell division protein FtsL; KEGG: slo:Shew_3460 cell division protein FtsL; cell division protein FtsL complement(4643238..4643552) Shewanella pealeana ATCC 700345 5664202 YP_001503664.1 CDS mraW NC_009901.1 4643569 4644516 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: slo:Shew_3461 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(4643569..4644516) Shewanella pealeana ATCC 700345 5664203 YP_001503665.1 CDS Spea_3820 NC_009901.1 4644547 4645005 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4644547..4645005) Shewanella pealeana ATCC 700345 5664204 YP_001503666.1 CDS Spea_3821 NC_009901.1 4645522 4645866 D KEGG: slo:Shew_3465 hypothetical protein; hypothetical protein 4645522..4645866 Shewanella pealeana ATCC 700345 5664205 YP_001503667.1 CDS Spea_3822 NC_009901.1 4645886 4647367 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: slo:Shew_3466 glycerol kinase; glycerol kinase complement(4645886..4647367) Shewanella pealeana ATCC 700345 5664206 YP_001503668.1 CDS Spea_3823 NC_009901.1 4647380 4647913 R KEGG: slo:Shew_3467 hypothetical protein; hypothetical protein complement(4647380..4647913) Shewanella pealeana ATCC 700345 5664207 YP_001503669.1 CDS Spea_3824 NC_009901.1 4648523 4649809 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO_4232 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein complement(4648523..4649809) Shewanella pealeana ATCC 700345 5664208 YP_001503670.1 CDS leuD NC_009901.1 4650323 4650928 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(4650323..4650928) Shewanella pealeana ATCC 700345 5664209 YP_001503671.1 CDS Spea_3826 NC_009901.1 4650938 4652338 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(4650938..4652338) Shewanella pealeana ATCC 700345 5664210 YP_001503672.1 CDS Spea_3827 NC_009901.1 4652341 4653435 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(4652341..4653435) Shewanella pealeana ATCC 700345 5664211 YP_001503673.1 CDS Spea_3828 NC_009901.1 4653521 4655092 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(4653521..4655092) Shewanella pealeana ATCC 700345 5664212 YP_001503674.1 CDS Spea_3829 NC_009901.1 4655617 4657407 D KEGG: sbl:Sbal_0385 response regulator receiver protein; response regulator receiver protein 4655617..4657407 Shewanella pealeana ATCC 700345 5664213 YP_001503675.1 CDS Spea_3830 NC_009901.1 4657473 4659296 R KEGG: shw:Sputw3181_0372 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(4657473..4659296) Shewanella pealeana ATCC 700345 5664214 YP_001503676.1 CDS Spea_3831 NC_009901.1 4659468 4659932 D PFAM: thioesterase superfamily protein; KEGG: son:SO_4242 hypothetical protein; hypothetical protein 4659468..4659932 Shewanella pealeana ATCC 700345 5664215 YP_001503677.1 CDS Spea_3832 NC_009901.1 4660109 4660996 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbl:Sbal_0382 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein 4660109..4660996 Shewanella pealeana ATCC 700345 5664216 YP_001503678.1 CDS Spea_3833 NC_009901.1 4661049 4661561 R KEGG: shw:Sputw3181_0369 hypothetical protein; hypothetical protein complement(4661049..4661561) Shewanella pealeana ATCC 700345 5664217 YP_001503679.1 CDS Spea_3834 NC_009901.1 4661631 4662953 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(4661631..4662953) Shewanella pealeana ATCC 700345 5664218 YP_001503680.1 CDS rpmG NC_009901.1 4663527 4663700 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(4663527..4663700) Shewanella pealeana ATCC 700345 5664219 YP_001503681.1 CDS rpmB NC_009901.1 4663707 4663943 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(4663707..4663943) Shewanella pealeana ATCC 700345 5664220 YP_001503682.1 CDS radC NC_009901.1 4664069 4664746 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(4664069..4664746) Shewanella pealeana ATCC 700345 5664221 YP_001503683.1 CDS Spea_3838 NC_009901.1 4664896 4666089 D KEGG: sfr:Sfri_3829 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 4664896..4666089 Shewanella pealeana ATCC 700345 5664222 YP_001503684.1 CDS dut NC_009901.1 4666089 4666547 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4666089..4666547 Shewanella pealeana ATCC 700345 5664223 YP_001503685.1 CDS slmA NC_009901.1 4666647 4667240 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4666647..4667240 Shewanella pealeana ATCC 700345 5664224 YP_001503686.1 CDS Spea_3841 NC_009901.1 4667377 4669341 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: slo:Shew_3485 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 4667377..4669341 Shewanella pealeana ATCC 700345 5664225 YP_001503687.1 CDS folE NC_009901.1 4669611 4670270 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4669611..4670270 Shewanella pealeana ATCC 700345 5664226 YP_001503688.1 CDS pyrE NC_009901.1 4670794 4671435 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(4670794..4671435) Shewanella pealeana ATCC 700345 5664227 YP_001503689.1 CDS rph NC_009901.1 4671555 4672268 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(4671555..4672268) Shewanella pealeana ATCC 700345 5664228 YP_001503690.1 CDS Spea_3845 NC_009901.1 4672541 4673404 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: slo:Shew_3489 YicC N-terminal domain protein; hypothetical protein 4672541..4673404 Shewanella pealeana ATCC 700345 5664229 YP_001503691.1 CDS Spea_3846 NC_009901.1 4673505 4674824 R PFAM: HipA domain protein; KEGG: sdn:Sden_0307 HipA-like protein; HipA domain-containing protein complement(4673505..4674824) Shewanella pealeana ATCC 700345 5664230 YP_001503692.1 CDS Spea_3847 NC_009901.1 4674824 4675105 R PFAM: helix-turn-helix domain protein; KEGG: sbm:Shew185_0365 helix-turn-helix domain protein; helix-turn-helix domain-containing protein complement(4674824..4675105) Shewanella pealeana ATCC 700345 5664231 YP_001503693.1 CDS Spea_3848 NC_009901.1 4675467 4675730 D PFAM: domain of unknown function DUF1732; KEGG: slo:Shew_3489 YicC N-terminal domain protein; hypothetical protein 4675467..4675730 Shewanella pealeana ATCC 700345 5664232 YP_001503694.1 CDS Spea_3849 NC_009901.1 4675864 4677174 R KEGG: xcb:XC_3913 hypothetical protein; hypothetical protein complement(4675864..4677174) Shewanella pealeana ATCC 700345 5664233 YP_001503695.1 CDS Spea_3850 NC_009901.1 4677747 4678586 D PFAM: purine or other phosphorylase family 1; KEGG: son:SO_3705 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase, putative; purine phosphorylase family 1 4677747..4678586 Shewanella pealeana ATCC 700345 5664234 YP_001503696.1 CDS Spea_3851 NC_009901.1 4678747 4680015 D TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO_3706 NupC family protein; nucleoside transporter 4678747..4680015 Shewanella pealeana ATCC 700345 5664235 YP_001503697.1 CDS Spea_3852 NC_009901.1 4680141 4683110 R KEGG: shn:Shewana3_1612 hypothetical protein; hypothetical protein complement(4680141..4683110) Shewanella pealeana ATCC 700345 5664236 YP_001503698.1 CDS Spea_3853 NC_009901.1 4683269 4683919 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reu:Reut_B4119 regulatory protein GntR, HTH:GntR, C-terminal; GntR family transcriptional regulator complement(4683269..4683919) Shewanella pealeana ATCC 700345 5664237 YP_001503699.1 CDS Spea_3854 NC_009901.1 4684001 4684903 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_C7696 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4684001..4684903) Shewanella pealeana ATCC 700345 5664238 YP_001503700.1 CDS Spea_3855 NC_009901.1 4684997 4686178 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: cdf:CD3002 probable carbohydrate hydrolase; D-galactarate dehydratase/Altronate hydrolase domain-containing protein complement(4684997..4686178) Shewanella pealeana ATCC 700345 5664239 YP_001503701.1 CDS Spea_3856 NC_009901.1 4686175 4686510 R KEGG: reh:H16_A1259 D-galactarate dehydratase; D-galactarate dehydratase complement(4686175..4686510) Shewanella pealeana ATCC 700345 5664240 YP_001503702.1 CDS Spea_3857 NC_009901.1 4686977 4688623 D member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; putative transporter 4686977..4688623 Shewanella pealeana ATCC 700345 5664241 YP_001503703.1 CDS Spea_3858 NC_009901.1 4688627 4689748 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_3855 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 4688627..4689748 Shewanella pealeana ATCC 700345 5664242 YP_001503704.1 CDS Spea_3859 NC_009901.1 4690418 4691281 D TIGRFAM: cytochrome C family protein; PFAM: multihaem cytochrome; KEGG: son:SO_1777 decaheme cytochrome c MtrA; cytochrome C family protein 4690418..4691281 Shewanella pealeana ATCC 700345 5664243 YP_001503705.1 CDS Spea_3860 NC_009901.1 4691291 4693012 D KEGG: sfr:Sfri_3685 outer membrane protein; hypothetical protein 4691291..4693012 Shewanella pealeana ATCC 700345 5664244 YP_001503706.1 CDS Spea_3861 NC_009901.1 4693023 4695473 D TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; anaerobic dimethyl sulfoxide reductase subunit A 4693023..4695473 Shewanella pealeana ATCC 700345 5664245 YP_001503707.1 CDS Spea_3862 NC_009901.1 4695484 4696101 D TIGRFAM: Dimethylsulfoxide reductase chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: vpa:VP1448 anaerobic dimethyl sulfoxide reductase, subunit B; dimethylsulfoxide reductase subunit B 4695484..4696101 Shewanella pealeana ATCC 700345 5664246 YP_001503708.1 CDS Spea_3863 NC_009901.1 4696103 4698190 D KEGG: son:SO_4356 hypothetical protein; hypothetical protein 4696103..4698190 Shewanella pealeana ATCC 700345 5664247 YP_001503709.1 CDS Spea_3864 NC_009901.1 4698245 4698865 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 4698245..4698865 Shewanella pealeana ATCC 700345 5664248 YP_001503710.1 CDS Spea_3865 NC_009901.1 4698856 4699221 D hypothetical protein 4698856..4699221 Shewanella pealeana ATCC 700345 5664249 YP_001503711.1 CDS Spea_3866 NC_009901.1 4699284 4699976 R PFAM: regulatory protein TetR; KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4699284..4699976) Shewanella pealeana ATCC 700345 5664250 YP_001503712.1 CDS Spea_3867 NC_009901.1 4700246 4701979 D TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: pst:PSPTO_0148 oligopeptide transporter, OPT family; OPT family oligopeptide transporter 4700246..4701979 Shewanella pealeana ATCC 700345 5664251 YP_001503713.1 CDS Spea_3868 NC_009901.1 4702004 4703218 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sfr:Sfri_2899 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(4702004..4703218) Shewanella pealeana ATCC 700345 5664252 YP_001503714.1 CDS Spea_3869 NC_009901.1 4703226 4714676 R TIGRFAM: conserved repeat domain; putative outer membrane adhesin like proteiin; PFAM: protein of unknown function DUF11; KEGG: shn:Shewana3_0168 Ig family protein; outer membrane adhesin-like protein complement(4703226..4714676) Shewanella pealeana ATCC 700345 5664253 YP_001503715.1 CDS Spea_3870 NC_009901.1 4715208 4715642 R KEGG: ppr:PBPRB1867 hypothetical protein; hypothetical protein complement(4715208..4715642) Shewanella pealeana ATCC 700345 5664254 YP_001503716.1 CDS Spea_3871 NC_009901.1 4715680 4717122 R PFAM: Pyridoxal-dependent decarboxylase; KEGG: ppr:PBPRB0277 hypothetical amino acid decarboxylase; pyridoxal-dependent decarboxylase complement(4715680..4717122) Shewanella pealeana ATCC 700345 5664255 YP_001503717.1 CDS Spea_3872 NC_009901.1 4717313 4718572 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: vha:VIBHAR_06184 hypothetical protein; amidohydrolase complement(4717313..4718572) Shewanella pealeana ATCC 700345 5664256 YP_001503718.1 CDS Spea_3873 NC_009901.1 4718783 4719481 D PFAM: protein of unknown function DUF159; KEGG: maq:Maqu_3372 protein of unknown function DUF159; hypothetical protein 4718783..4719481 Shewanella pealeana ATCC 700345 5664257 YP_001503719.1 CDS Spea_3874 NC_009901.1 4719497 4720564 R PFAM: aminoglycoside phosphotransferase; KEGG: shn:Shewana3_3807 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(4719497..4720564) Shewanella pealeana ATCC 700345 5664258 YP_001503720.1 CDS Spea_3875 NC_009901.1 4720662 4721567 R KEGG: shn:Shewana3_3808 hypothetical protein; hypothetical protein complement(4720662..4721567) Shewanella pealeana ATCC 700345 5664259 YP_001503721.1 CDS Spea_3876 NC_009901.1 4721695 4722822 R KEGG: slo:Shew_3496 hypothetical protein; hypothetical protein complement(4721695..4722822) Shewanella pealeana ATCC 700345 5664260 YP_001503722.1 CDS gmk NC_009901.1 4723151 4723783 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4723151..4723783 Shewanella pealeana ATCC 700345 5664261 YP_001503723.1 CDS rpoZ NC_009901.1 4723845 4724129 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4723845..4724129 Shewanella pealeana ATCC 700345 5664262 YP_001503724.1 CDS Spea_3879 NC_009901.1 4724143 4726248 D KEGG: slo:Shew_3499 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4724143..4726248 Shewanella pealeana ATCC 700345 5664263 YP_001503725.1 CDS Spea_3880 NC_009901.1 4726276 4726659 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: slo:Shew_3500 putative endoribonuclease L-PSP; putative endoribonuclease L-PSP 4726276..4726659 Shewanella pealeana ATCC 700345 5664264 YP_001503726.1 CDS Spea_3881 NC_009901.1 4726801 4727487 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 4726801..4727487 Shewanella pealeana ATCC 700345 5664265 YP_001503727.1 CDS Spea_3882 NC_009901.1 4727800 4729455 D PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_3502 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4727800..4729455 Shewanella pealeana ATCC 700345 5664266 YP_001503728.1 CDS Spea_3883 NC_009901.1 4729636 4730559 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shw:Sputw3181_3775 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4729636..4730559 Shewanella pealeana ATCC 700345 5664267 YP_001503729.1 CDS Spea_3884 NC_009901.1 4730762 4732852 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4730762..4732852 Shewanella pealeana ATCC 700345 5664268 YP_001503730.1 CDS Spea_3885 NC_009901.1 4732994 4733857 D KEGG: slo:Shew_3508 hypothetical protein; hypothetical protein 4732994..4733857 Shewanella pealeana ATCC 700345 5664269 YP_001503731.1 CDS Spea_3886 NC_009901.1 4734113 4734838 D KEGG: shm:Shewmr7_3674 hypothetical protein; hypothetical protein 4734113..4734838 Shewanella pealeana ATCC 700345 5664270 YP_001503732.1 CDS Spea_3887 NC_009901.1 4734831 4735649 D PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_3510 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4734831..4735649 Shewanella pealeana ATCC 700345 5664271 YP_001503733.1 CDS Spea_3888 NC_009901.1 4735646 4735900 D KEGG: slo:Shew_3511 acyl carrier protein, putative; acyl carrier protein 4735646..4735900 Shewanella pealeana ATCC 700345 5664272 YP_001503734.1 CDS Spea_3889 NC_009901.1 4735909 4736157 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4735909..4736157 Shewanella pealeana ATCC 700345 5664273 YP_001503735.1 CDS Spea_3890 NC_009901.1 4736157 4736705 D KEGG: slo:Shew_3513 hypothetical protein; hypothetical protein 4736157..4736705 Shewanella pealeana ATCC 700345 5664274 YP_001503736.1 CDS Spea_3891 NC_009901.1 4736702 4738081 D KEGG: slo:Shew_3514 hypothetical protein; hypothetical protein 4736702..4738081 Shewanella pealeana ATCC 700345 5664275 YP_001503737.1 CDS Spea_3892 NC_009901.1 4738078 4738464 D PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sbm:Shew185_0336 thioester dehydrase family protein; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 4738078..4738464 Shewanella pealeana ATCC 700345 5664276 YP_001503738.1 CDS Spea_3893 NC_009901.1 4738464 4740221 D PFAM: glycosyl transferase family 2; lipid A biosynthesis acyltransferase; KEGG: slo:Shew_3516 glycosyl transferase, family 2; glycosyl transferase family protein 4738464..4740221 Shewanella pealeana ATCC 700345 5664277 YP_001503739.1 CDS Spea_3894 NC_009901.1 4740218 4741780 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: slo:Shew_3517 histidine ammonia-lyase; histidine ammonia-lyase 4740218..4741780 Shewanella pealeana ATCC 700345 5664278 YP_001503740.1 CDS Spea_3895 NC_009901.1 4741780 4742229 D KEGG: shn:Shewana3_0334 conserved hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 4741780..4742229 Shewanella pealeana ATCC 700345 5664279 YP_001503741.1 CDS Spea_3896 NC_009901.1 4742226 4742972 D KEGG: slo:Shew_3519 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 4742226..4742972 Shewanella pealeana ATCC 700345 5664280 YP_001503742.1 CDS Spea_3897 NC_009901.1 4742972 4745386 D KEGG: spc:Sputcn32_0437 hypothetical protein; hypothetical protein 4742972..4745386 Shewanella pealeana ATCC 700345 5664281 YP_001503743.1 CDS Spea_3898 NC_009901.1 4745376 4746665 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; tryptophan halogenase 4745376..4746665 Shewanella pealeana ATCC 700345 5664282 YP_001503744.1 CDS Spea_3899 NC_009901.1 4746653 4747348 D KEGG: son:SO_4379 hypothetical protein; hypothetical protein 4746653..4747348 Shewanella pealeana ATCC 700345 5664283 YP_001503745.1 CDS Spea_3900 NC_009901.1 4747371 4748669 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4747371..4748669 Shewanella pealeana ATCC 700345 5664284 YP_001503746.1 CDS Spea_3901 NC_009901.1 4748662 4749138 D PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sfr:Sfri_0339 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 4748662..4749138 Shewanella pealeana ATCC 700345 5664285 YP_001503747.1 CDS fabG NC_009901.1 4749217 4749942 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4749217..4749942 Shewanella pealeana ATCC 700345 5664286 YP_001503748.1 CDS Spea_3903 NC_009901.1 4749939 4751186 D FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 4749939..4751186 Shewanella pealeana ATCC 700345 5664287 YP_001503749.1 CDS Spea_3904 NC_009901.1 4751801 4752127 D PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_0323 rhodanese domain protein; rhodanese domain-containing protein 4751801..4752127 Shewanella pealeana ATCC 700345 5664288 YP_001503750.1 CDS Spea_3905 NC_009901.1 4752145 4752594 R TIGRFAM: thioesterase domain, putative; PFAM: Thioesterase putative; KEGG: she:Shewmr4_0320 thioesterase domain, putative; thioesterase domain-containing protein complement(4752145..4752594) Shewanella pealeana ATCC 700345 5664289 YP_001503751.1 CDS Spea_3906 NC_009901.1 4752644 4753081 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(4752644..4753081) Shewanella pealeana ATCC 700345 5664290 YP_001503752.1 CDS Spea_3907 NC_009901.1 4753426 4754007 R KEGG: sbm:Shew185_0316 hypothetical protein; hypothetical protein complement(4753426..4754007) Shewanella pealeana ATCC 700345 5664291 YP_001503753.1 CDS Spea_3908 NC_009901.1 4754027 4754959 R PFAM: alpha/beta hydrolase fold; KEGG: slo:Shew_3544 alpha/beta hydrolase fold; prolyl aminopeptidase complement(4754027..4754959) Shewanella pealeana ATCC 700345 5664292 YP_001503754.1 CDS rbn NC_009901.1 4754959 4755981 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(4754959..4755981) Shewanella pealeana ATCC 700345 5664293 YP_001503755.1 CDS Spea_3910 NC_009901.1 4756115 4756342 D KEGG: slo:Shew_3546 hypothetical protein; hypothetical protein 4756115..4756342 Shewanella pealeana ATCC 700345 5664294 YP_001503756.1 CDS Spea_3911 NC_009901.1 4756373 4757020 D KEGG: sbm:Shew185_0312 hypothetical protein; hypothetical protein 4756373..4757020 Shewanella pealeana ATCC 700345 5664295 YP_001503757.1 CDS Spea_3912 NC_009901.1 4757204 4758418 D KEGG: slo:Shew_3549 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4757204..4758418 Shewanella pealeana ATCC 700345 5664296 YP_001503758.1 CDS Spea_3913 NC_009901.1 4758754 4759617 R TIGRFAM: pyridoxal kinase; KEGG: vfi:VF2056 pyridoxine kinase; pyridoxal kinase complement(4758754..4759617) Shewanella pealeana ATCC 700345 5664297 YP_001503759.1 CDS Spea_3914 NC_009901.1 4759907 4761361 R PFAM: Disulphide bond formation protein DsbB; KEGG: shm:Shewmr7_0287 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(4759907..4761361) Shewanella pealeana ATCC 700345 5664298 YP_001503760.1 CDS Spea_3915 NC_009901.1 4762221 4764050 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: saz:Sama_3415 virulence regulator BipA; GTP-binding protein TypA complement(4762221..4764050) Shewanella pealeana ATCC 700345 5664299 YP_001503761.1 CDS glnA NC_009901.1 4764725 4766134 D forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4764725..4766134 Shewanella pealeana ATCC 700345 5664300 YP_001503762.1 CDS Spea_3917 NC_009901.1 4766310 4767572 D PFAM: sodium:dicarboxylate symporter; KEGG: shn:Shewana3_0297 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 4766310..4767572 Shewanella pealeana ATCC 700345 5664301 YP_001503763.1 CDS Spea_3918 NC_009901.1 4767795 4768199 D KEGG: pha:PSHAa1478 hypothetical protein; hypothetical protein 4767795..4768199 Shewanella pealeana ATCC 700345 5664302 YP_001503764.1 CDS Spea_3919 NC_009901.1 4768245 4768559 D PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_1386 transcriptional regulator, XRE family; XRE family transcriptional regulator 4768245..4768559 Shewanella pealeana ATCC 700345 5664303 YP_001503765.1 CDS Spea_3920 NC_009901.1 4768626 4769636 R KEGG: sus:Acid_2127 glycosyl hydrolase, BNR repeat-containing protein; BNR repeat-containing glycosyl hydrolase complement(4768626..4769636) Shewanella pealeana ATCC 700345 5664304 YP_001503766.1 CDS Spea_3921 NC_009901.1 4769883 4770188 D hypothetical protein 4769883..4770188 Shewanella pealeana ATCC 700345 5664305 YP_001503767.1 CDS Spea_3922 NC_009901.1 4770233 4771348 R PFAM: aminotransferase class V; KEGG: sbm:Shew185_0300 aminotransferase class V; class V aminotransferase complement(4770233..4771348) Shewanella pealeana ATCC 700345 5664306 YP_001503768.1 CDS Spea_3923 NC_009901.1 4771353 4772525 R PFAM: Domain of unknown function DUF1864; KEGG: sbm:Shew185_0299 domain of unknown function DUF1864; hypothetical protein complement(4771353..4772525) Shewanella pealeana ATCC 700345 5664307 YP_001503769.1 CDS Spea_3924 NC_009901.1 4772696 4773148 D PFAM: regulatory protein AsnC/Lrp family; KEGG: slo:Shew_3558 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4772696..4773148 Shewanella pealeana ATCC 700345 5664308 YP_001503770.1 CDS Spea_3925 NC_009901.1 4773308 4774465 D PFAM: iron-containing alcohol dehydrogenase; KEGG: shw:Sputw3181_0227 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4773308..4774465 Shewanella pealeana ATCC 700345 5664309 YP_001503771.1 CDS Spea_3926 NC_009901.1 4774570 4775247 D PFAM: ThiJ/PfpI domain protein; KEGG: sbm:Shew185_0262 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 4774570..4775247 Shewanella pealeana ATCC 700345 5664310 YP_001503772.1 CDS Spea_3927 NC_009901.1 4775404 4776048 R KEGG: ppr:PBPRA1243 hypothetical protein; hypothetical protein complement(4775404..4776048) Shewanella pealeana ATCC 700345 5664311 YP_001503773.1 CDS Spea_3928 NC_009901.1 4776409 4776954 D KEGG: slo:Shew_3559 hypothetical protein; hypothetical protein 4776409..4776954 Shewanella pealeana ATCC 700345 5664312 YP_001503774.1 CDS Spea_3929 NC_009901.1 4777107 4778147 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sbl:Sbal_0267 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB 4777107..4778147 Shewanella pealeana ATCC 700345 5664313 YP_001503775.1 CDS Spea_3930 NC_009901.1 4778165 4779574 D KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 4778165..4779574 Shewanella pealeana ATCC 700345 5664314 YP_001503776.1 CDS Spea_3931 NC_009901.1 4779643 4780512 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(4779643..4780512) Shewanella pealeana ATCC 700345 5664315 YP_001503777.1 CDS Spea_3932 NC_009901.1 4780672 4781154 R PFAM: protein of unknown function Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein complement(4780672..4781154) Shewanella pealeana ATCC 700345 5664316 YP_001503778.1 CDS Spea_3933 NC_009901.1 4781386 4782069 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4781386..4782069 Shewanella pealeana ATCC 700345 5664317 YP_001503779.1 CDS Spea_3934 NC_009901.1 4782070 4783446 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3571 integral membrane sensor signal transduction histidine kinase; histidine kinase 4782070..4783446 Shewanella pealeana ATCC 700345 5664318 YP_001503780.1 CDS Spea_3935 NC_009901.1 4783462 4784109 R PFAM: regulatory protein TetR; KEGG: sbl:Sbal_0259 putative transcriptional regulator, TetR family; regulatory protein TetR complement(4783462..4784109) Shewanella pealeana ATCC 700345 5664319 YP_001503781.1 CDS Spea_3936 NC_009901.1 4784231 4785118 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: shm:Shewmr7_2226 transcriptional regulator, LysR family; LysR family transcriptional regulator 4784231..4785118 Shewanella pealeana ATCC 700345 5664320 YP_001503782.1 CDS Spea_3937 NC_009901.1 4785588 4786832 R KEGG: sbl:Sbal_0256 hypothetical protein; hypothetical protein complement(4785588..4786832) Shewanella pealeana ATCC 700345 5664321 YP_001503783.1 CDS Spea_3938 NC_009901.1 4787112 4787465 R KEGG: shm:Shewmr7_2229 tetraheme cytochrome c; tetraheme cytochrome c complement(4787112..4787465) Shewanella pealeana ATCC 700345 5664322 YP_001503784.1 CDS Spea_3939 NC_009901.1 4787494 4789014 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: spc:Sputcn32_3536 flavocytochrome c; flavocytochrome c complement(4787494..4789014) Shewanella pealeana ATCC 700345 5664323 YP_001503785.1 CDS Spea_3940 NC_009901.1 4789486 4790418 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vfi:VF0021 transcriptional regulators, LysR family; LysR family transcriptional regulator 4789486..4790418 Shewanella pealeana ATCC 700345 5664324 YP_001503786.1 CDS Spea_3941 NC_009901.1 4790736 4791716 R TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbl:Sbal_0250 alcohol dehydrogenase, zinc-binding domain protein; quinone oxidoreductase complement(4790736..4791716) Shewanella pealeana ATCC 700345 5664325 YP_001503787.1 CDS Spea_3942 NC_009901.1 4791974 4793494 D PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 4791974..4793494 Shewanella pealeana ATCC 700345 5664326 YP_001503788.1 CDS Spea_3943 NC_009901.1 4793708 4795261 D KEGG: son:SO_2407 hypothetical protein; hypothetical protein 4793708..4795261 Shewanella pealeana ATCC 700345 5664327 YP_001503789.1 CDS Spea_3944 NC_009901.1 4795292 4796170 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: sbm:Shew185_2284 radical SAM domain protein; radical SAM domain-containing protein 4795292..4796170 Shewanella pealeana ATCC 700345 5664328 YP_001503790.1 CDS Spea_3945 NC_009901.1 4798113 4799060 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbm:Shew185_2285 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4798113..4799060) Shewanella pealeana ATCC 700345 5664329 YP_001503791.1 CDS Spea_3946 NC_009901.1 4799324 4799785 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbm:Shew185_4126 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 4799324..4799785 Shewanella pealeana ATCC 700345 5664330 YP_001503792.1 CDS Spea_3947 NC_009901.1 4799885 4801330 R PFAM: peptidase M16 domain protein; KEGG: shn:Shewana3_3939 DNA-directed RNA polymerase; peptidase M16 domain-containing protein complement(4799885..4801330) Shewanella pealeana ATCC 700345 5664331 YP_001503793.1 CDS Spea_3948 NC_009901.1 4801327 4802658 R PFAM: peptidase M16 domain protein; KEGG: slo:Shew_3581 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(4801327..4802658) Shewanella pealeana ATCC 700345 5664332 YP_001503794.1 CDS Spea_3949 NC_009901.1 4802932 4803600 D PFAM: type IV pilus assembly PilZ; KEGG: slo:Shew_3582 hypothetical protein; type IV pilus assembly PilZ 4802932..4803600 Shewanella pealeana ATCC 700345 5664333 YP_001503795.1 CDS Spea_3950 NC_009901.1 4803675 4804667 R KEGG: bfs:BF1302 hypothetical protein; hypothetical protein complement(4803675..4804667) Shewanella pealeana ATCC 700345 5664334 YP_001503796.1 CDS Spea_3951 NC_009901.1 4804719 4805354 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: slo:Shew_3583 methyltransferase type 12; type 11 methyltransferase complement(4804719..4805354) Shewanella pealeana ATCC 700345 5664335 YP_001503797.1 CDS Spea_3952 NC_009901.1 4805393 4805707 R KEGG: slo:Shew_3584 hypothetical protein; hypothetical protein complement(4805393..4805707) Shewanella pealeana ATCC 700345 5664336 YP_001503798.1 CDS Spea_3953 NC_009901.1 4806122 4808266 D KEGG: shw:Sputw3181_3881 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4806122..4808266 Shewanella pealeana ATCC 700345 5664337 YP_001503799.1 CDS Spea_3954 NC_009901.1 4808529 4809200 R PFAM: DTW domain containing protein; KEGG: sbm:Shew185_4137 DTW domain containing protein; DTW domain-containing protein complement(4808529..4809200) Shewanella pealeana ATCC 700345 5664338 YP_001503800.1 CDS Spea_3955 NC_009901.1 4809422 4810438 D KEGG: slo:Shew_3587 hypothetical protein; hypothetical protein 4809422..4810438 Shewanella pealeana ATCC 700345 5664339 YP_001503801.1 CDS Spea_3956 NC_009901.1 4810554 4811756 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shn:Shewana3_3948 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(4810554..4811756) Shewanella pealeana ATCC 700345 5664340 YP_001503802.1 CDS Spea_3957 NC_009901.1 4811857 4812825 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbl:Sbal_0195 transcriptional regulator, LysR family; LysR family transcriptional regulator 4811857..4812825 Shewanella pealeana ATCC 700345 5664341 YP_001503803.1 CDS Spea_3958 NC_009901.1 4812990 4813319 D KEGG: slo:Shew_3590 hypothetical protein; hypothetical protein 4812990..4813319 Shewanella pealeana ATCC 700345 5664342 YP_001503804.1 CDS Spea_3959 NC_009901.1 4813337 4814605 R KEGG: slo:Shew_3591 hypothetical protein; hypothetical protein complement(4813337..4814605) Shewanella pealeana ATCC 700345 5664343 YP_001503805.1 CDS Spea_3960 NC_009901.1 4814948 4816369 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: slo:Shew_3592 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4814948..4816369) Shewanella pealeana ATCC 700345 5664344 YP_001503806.1 CDS Spea_3961 NC_009901.1 4816487 4817221 R KEGG: slo:Shew_3593 hypothetical protein; hypothetical protein complement(4816487..4817221) Shewanella pealeana ATCC 700345 5664345 YP_001503807.1 CDS Spea_3962 NC_009901.1 4817405 4817923 D KEGG: slo:Shew_3594 hypothetical protein; hypothetical protein 4817405..4817923 Shewanella pealeana ATCC 700345 5664346 YP_001503808.1 CDS Spea_3963 NC_009901.1 4818028 4818495 D PFAM: protein of unknown function DUF1332; KEGG: slo:Shew_3595 protein of unknown function DUF1332; hypothetical protein 4818028..4818495 Shewanella pealeana ATCC 700345 5664347 YP_001503809.1 CDS Spea_3964 NC_009901.1 4819023 4819313 R KEGG: shw:Sputw3181_2184 hypothetical protein; hypothetical protein complement(4819023..4819313) Shewanella pealeana ATCC 700345 5664348 YP_001503810.1 CDS Spea_3965 NC_009901.1 4819335 4820276 R PFAM: Polysulphide reductase NrfD; KEGG: shw:Sputw3181_3893 polysulphide reductase, NrfD; polysulfide reductase NrfD complement(4819335..4820276) Shewanella pealeana ATCC 700345 5664349 YP_001503811.1 CDS Spea_3966 NC_009901.1 4820273 4820956 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3894 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(4820273..4820956) Shewanella pealeana ATCC 700345 5664350 YP_001503812.1 CDS Spea_3967 NC_009901.1 4820971 4821441 R KEGG: shw:Sputw3181_3895 formate-dependent nitrite reductase; formate-dependent nitrite reductase complement(4820971..4821441) Shewanella pealeana ATCC 700345 5664351 YP_001503813.1 CDS Spea_3968 NC_009901.1 4821524 4822015 R KEGG: slo:Shew_3155 hypothetical protein; hypothetical protein complement(4821524..4822015) Shewanella pealeana ATCC 700345 5664352 YP_001503814.1 CDS Spea_3969 NC_009901.1 4822559 4823524 D PFAM: regulatory protein LysR; KEGG: shn:Shewana3_3964 transcriptional regulator, LysR family; LysR family transcriptional regulator 4822559..4823524 Shewanella pealeana ATCC 700345 5664353 YP_001503815.1 CDS Spea_3970 NC_009901.1 4823602 4824555 R PFAM: regulatory protein LysR; KEGG: slo:Shew_3153 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4823602..4824555) Shewanella pealeana ATCC 700345 5664354 YP_001503816.1 CDS Spea_3971 NC_009901.1 4824773 4826500 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4824773..4826500 Shewanella pealeana ATCC 700345 5664355 YP_001503817.1 CDS Spea_3972 NC_009901.1 4826500 4827285 D PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3768 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4826500..4827285 Shewanella pealeana ATCC 700345 5664356 YP_001503818.1 CDS Spea_3973 NC_009901.1 4827341 4828414 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4827341..4828414 Shewanella pealeana ATCC 700345 5664357 YP_001503819.1 CDS Spea_3974 NC_009901.1 4828495 4829949 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_3843 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 4828495..4829949 Shewanella pealeana ATCC 700345 5664358 YP_001503820.1 CDS Spea_3975 NC_009901.1 4830318 4830599 R hypothetical protein complement(4830318..4830599) Shewanella pealeana ATCC 700345 5664359 YP_001503821.1 CDS Spea_3976 NC_009901.1 4831284 4832300 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 4831284..4832300 Shewanella pealeana ATCC 700345 5664360 YP_001503822.1 CDS Spea_3977 NC_009901.1 4832882 4833739 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4832882..4833739) Shewanella pealeana ATCC 700345 5664361 YP_001503823.1 CDS Spea_3978 NC_009901.1 4833973 4834938 R PFAM: protein of unknown function DUF214; KEGG: slo:Shew_3604 protein of unknown function DUF214; hypothetical protein complement(4833973..4834938) Shewanella pealeana ATCC 700345 5664362 YP_001503824.1 CDS Spea_3979 NC_009901.1 4834948 4835640 R KEGG: sbm:Shew185_4163 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(4834948..4835640) Shewanella pealeana ATCC 700345 5664363 YP_001503825.1 CDS Spea_3980 NC_009901.1 4835734 4837665 R KEGG: sbm:Shew185_4164 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(4835734..4837665) Shewanella pealeana ATCC 700345 5664364 YP_001503826.1 CDS Spea_3981 NC_009901.1 4837891 4838520 D TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: sfr:Sfri_0274 putative methyltransferase; putative methyltransferase 4837891..4838520 Shewanella pealeana ATCC 700345 5664365 YP_001503827.1 CDS Spea_3982 NC_009901.1 4838521 4838802 D PFAM: protein of unknown function DUF1145; KEGG: spc:Sputcn32_0287 protein of unknown function DUF1145; hypothetical protein 4838521..4838802 Shewanella pealeana ATCC 700345 5664366 YP_001503828.1 CDS Spea_3983 NC_009901.1 4839432 4839995 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: slo:Shew_3540 NapC/NirT cytochrome c domain protein; NapC/NirT cytochrome c domain-containing protein complement(4839432..4839995) Shewanella pealeana ATCC 700345 5664367 YP_001503829.1 CDS Spea_3984 NC_009901.1 4840385 4840813 D KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein 4840385..4840813 Shewanella pealeana ATCC 700345 5664368 YP_001503830.1 CDS Spea_3985 NC_009901.1 4841018 4841437 D KEGG: sfr:Sfri_0591 hypothetical protein; hypothetical protein 4841018..4841437 Shewanella pealeana ATCC 700345 5664369 YP_001503831.1 CDS Spea_3986 NC_009901.1 4841556 4841972 D KEGG: slo:Shew_3537 hypothetical protein; hypothetical protein 4841556..4841972 Shewanella pealeana ATCC 700345 5664370 YP_001503832.1 CDS Spea_3987 NC_009901.1 4842116 4842730 D KEGG: slo:Shew_3536 hypothetical protein; hypothetical protein 4842116..4842730 Shewanella pealeana ATCC 700345 5664371 YP_001503833.1 CDS Spea_3988 NC_009901.1 4842755 4844677 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sfr:Sfri_0267 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 4842755..4844677 Shewanella pealeana ATCC 700345 5664372 YP_001503834.1 CDS Spea_3989 NC_009901.1 4844691 4847828 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sfr:Sfri_0266 heavy metal efflux pump, CzcA family protein; CzcA family heavy metal efflux protein 4844691..4847828 Shewanella pealeana ATCC 700345 5664373 YP_001503835.1 CDS Spea_3990 NC_009901.1 4848365 4849147 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: slo:Shew_3533 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4848365..4849147) Shewanella pealeana ATCC 700345 5664374 YP_001503836.1 CDS Spea_3991 NC_009901.1 4849339 4850529 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase 4849339..4850529 Shewanella pealeana ATCC 700345 5664375 YP_001503837.1 CDS Spea_3992 NC_009901.1 4850613 4851836 R PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRB1680 putative multidrug resistance efflux pump; secretion protein HlyD family protein complement(4850613..4851836) Shewanella pealeana ATCC 700345 5664376 YP_001503838.1 CDS Spea_3993 NC_009901.1 4851829 4852176 R KEGG: ppr:PBPRB1681 putative permease of the major facilitator superfamily; major facilitator superfamily permease complement(4851829..4852176) Shewanella pealeana ATCC 700345 5664377 YP_001503839.1 CDS Spea_3994 NC_009901.1 4852314 4853342 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ppr:PBPRB1682 hypothetical AraC-type transcriptional regulator; AraC family transcriptional regulator 4852314..4853342 Shewanella pealeana ATCC 700345 5664378 YP_001503840.1 CDS Spea_3995 NC_009901.1 4853380 4854636 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: slo:Shew_3531 aromatic amino acid transporter; aromatic amino acid transporter complement(4853380..4854636) Shewanella pealeana ATCC 700345 5664379 YP_001503841.1 CDS Spea_3996 NC_009901.1 4854636 4857059 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4854636..4857059) Shewanella pealeana ATCC 700345 5664380 YP_001503842.1 CDS Spea_3997 NC_009901.1 4857468 4858088 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4857468..4858088 Shewanella pealeana ATCC 700345 5664381 YP_001503843.1 CDS Spea_3998 NC_009901.1 4858085 4858633 D KEGG: sbm:Shew185_4179 hypothetical protein; hypothetical protein 4858085..4858633 Shewanella pealeana ATCC 700345 5664382 YP_001503844.1 CDS Spea_3999 NC_009901.1 4859111 4860685 D KEGG: slo:Shew_0125 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II 4859111..4860685 Shewanella pealeana ATCC 700345 5664383 YP_001503845.1 CDS Spea_4000 NC_009901.1 4860695 4862299 D KEGG: shn:Shewana3_3992 cytochrome c oxidase, subunit I; TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I type 4860695..4862299 Shewanella pealeana ATCC 700345 5664384 YP_001503846.1 CDS Spea_4001 NC_009901.1 4862302 4862877 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4862302..4862877 Shewanella pealeana ATCC 700345 5664385 YP_001503847.1 CDS Spea_4002 NC_009901.1 4862874 4863755 D PFAM: cytochrome c oxidase subunit III; KEGG: slo:Shew_0122 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 4862874..4863755 Shewanella pealeana ATCC 700345 5664386 YP_001503848.1 CDS Spea_4003 NC_009901.1 4863801 4864727 D KEGG: shw:Sputw3181_0129 hypothetical protein; hypothetical protein 4863801..4864727 Shewanella pealeana ATCC 700345 5664387 YP_001503849.1 CDS Spea_4004 NC_009901.1 4864923 4865465 D KEGG: slo:Shew_0119 hypothetical protein; hypothetical protein 4864923..4865465 Shewanella pealeana ATCC 700345 5664388 YP_001503850.1 CDS Spea_4005 NC_009901.1 4865611 4866594 D PFAM: cytochrome oxidase assembly; KEGG: sdn:Sden_3523 cytochrome oxidase assembly; cytochrome oxidase assembly 4865611..4866594 Shewanella pealeana ATCC 700345 5664389 YP_001503851.1 CDS Spea_4006 NC_009901.1 4866661 4867566 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4866661..4867566 Shewanella pealeana ATCC 700345 5664390 YP_001503852.1 CDS Spea_4007 NC_009901.1 4867601 4868230 D PFAM: electron transport protein SCO1/SenC; KEGG: slo:Shew_0116 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4867601..4868230 Shewanella pealeana ATCC 700345 5664391 YP_001503853.1 CDS Spea_4008 NC_009901.1 4868294 4869340 R PFAM: polysaccharide deacetylase; KEGG: sbl:Sbal_0145 polysaccharide deacetylase; polysaccharide deacetylase complement(4868294..4869340) Shewanella pealeana ATCC 700345 5664392 YP_001503854.1 CDS Spea_4009 NC_009901.1 4869359 4870690 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbl:Sbal_0144 MATE efflux family protein; MATE efflux family protein 4869359..4870690 Shewanella pealeana ATCC 700345 5664393 YP_001503855.1 CDS Spea_4010 NC_009901.1 4870783 4871361 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein complement(4870783..4871361) Shewanella pealeana ATCC 700345 5664394 YP_001503856.1 CDS Spea_4011 NC_009901.1 4871560 4874112 D PFAM: peptidase M14 carboxypeptidase A; KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A 4871560..4874112 Shewanella pealeana ATCC 700345 5664395 YP_001503857.1 CDS Spea_4012 NC_009901.1 4874147 4874896 R KEGG: shw:Sputw3181_0113 competence protein ComF; competence protein ComF complement(4874147..4874896) Shewanella pealeana ATCC 700345 5664396 YP_001503858.1 CDS Spea_4013 NC_009901.1 4874918 4875685 D KEGG: sbm:Shew185_4199 BioH protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; bioH protein 4874918..4875685 Shewanella pealeana ATCC 700345 5664397 YP_001503859.1 CDS Spea_4014 NC_009901.1 4875808 4876305 D KEGG: saz:Sama_3506 hypothetical protein; hypothetical protein 4875808..4876305 Shewanella pealeana ATCC 700345 5664398 YP_001503860.1 CDS Spea_4015 NC_009901.1 4876362 4878773 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: slo:Shew_3634 RNA binding S1 domain protein; RNA-binding S1 domain-containing protein complement(4876362..4878773) Shewanella pealeana ATCC 700345 5664399 YP_001503861.1 CDS Spea_4016 NC_009901.1 4878864 4879343 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: stm:STM3503 transcription elongation factor and transcript cleavage; transcription elongation factor GreB complement(4878864..4879343) Shewanella pealeana ATCC 700345 5664400 YP_001503862.1 CDS ompR NC_009901.1 4879682 4880407 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4879682..4880407 Shewanella pealeana ATCC 700345 5664401 YP_001503863.1 CDS envZ NC_009901.1 4880530 4881852 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4880530..4881852 Shewanella pealeana ATCC 700345 5664402 YP_001503864.1 CDS Spea_4019 NC_009901.1 4881979 4883919 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4881979..4883919 Shewanella pealeana ATCC 700345 5664403 YP_001503865.1 CDS Spea_4020 NC_009901.1 4884012 4884986 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: son:SO_3874 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4884012..4884986) Shewanella pealeana ATCC 700345 5664404 YP_001503866.1 CDS Spea_4021 NC_009901.1 4885169 4885927 R KEGG: son:SO_3873 hypothetical protein; hypothetical protein complement(4885169..4885927) Shewanella pealeana ATCC 700345 5664405 YP_001503867.1 CDS Spea_4022 NC_009901.1 4885978 4887768 R PFAM: Arylsulfotransferase; KEGG: son:SO_3872 arylsulfate sulfotransferase; arylsulfotransferase complement(4885978..4887768) Shewanella pealeana ATCC 700345 5664406 YP_001503868.1 CDS Spea_4023 NC_009901.1 4888490 4889101 D PFAM: DSBA oxidoreductase; KEGG: son:SO_3871 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 4888490..4889101 Shewanella pealeana ATCC 700345 5664407 YP_001503869.1 CDS Spea_4024 NC_009901.1 4889111 4889746 D PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO_3870 disulfide bond formation protein; disulfide bond formation protein DsbB 4889111..4889746 Shewanella pealeana ATCC 700345 5664408 YP_001503870.1 CDS Spea_4025 NC_009901.1 4889945 4890610 R PFAM: regulatory protein TetR; KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4889945..4890610) Shewanella pealeana ATCC 700345 5664409 YP_001503871.1 CDS Spea_4026 NC_009901.1 4890775 4891521 D KEGG: vfi:VF0719 putative sugar hydrolase; hypothetical protein 4890775..4891521 Shewanella pealeana ATCC 700345 5664410 YP_001503872.1 CDS Spea_4027 NC_009901.1 4891536 4893296 D PFAM: Arylsulfotransferase; KEGG: spt:SPA3941 hypothetical protein; arylsulfotransferase 4891536..4893296 Shewanella pealeana ATCC 700345 5664411 YP_001503873.1 CDS Spea_4028 NC_009901.1 4893365 4893976 D PFAM: DSBA oxidoreductase; KEGG: son:SO_3871 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 4893365..4893976 Shewanella pealeana ATCC 700345 5664412 YP_001503874.1 CDS Spea_4029 NC_009901.1 4893986 4894609 D PFAM: Disulphide bond formation protein DsbB; KEGG: son:SO_3870 disulfide bond formation protein; disulfide bond formation protein DsbB 4893986..4894609 Shewanella pealeana ATCC 700345 5664413 YP_001503875.1 CDS Spea_4030 NC_009901.1 4894801 4895691 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: slo:Shew_2670 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4894801..4895691) Shewanella pealeana ATCC 700345 5664414 YP_001503876.1 CDS Spea_4031 NC_009901.1 4895880 4896818 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: slo:Shew_2671 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(4895880..4896818) Shewanella pealeana ATCC 700345 5664415 YP_001503877.1 CDS Spea_4032 NC_009901.1 4896994 4897662 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(4896994..4897662) Shewanella pealeana ATCC 700345 5664416 YP_001503878.1 CDS Spea_4033 NC_009901.1 4897742 4898593 R PFAM: MaoC domain protein dehydratase; KEGG: drm:Dred_0577 MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(4897742..4898593) Shewanella pealeana ATCC 700345 5664417 YP_001503879.1 CDS Spea_4034 NC_009901.1 4898687 4899472 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(4898687..4899472) Shewanella pealeana ATCC 700345 5664418 YP_001503880.1 CDS caiC NC_009901.1 4899535 4901088 R PFAM: AMP-dependent synthetase and ligase; KEGG: slo:Shew_2673 AMP-dependent synthetase and ligase; putative crotonobetaine/carnitine-CoA ligase complement(4899535..4901088) Shewanella pealeana ATCC 700345 5664419 YP_001503881.1 CDS Spea_4036 NC_009901.1 4901099 4902361 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase complement(4901099..4902361) Shewanella pealeana ATCC 700345 5664420 YP_001503882.1 CDS Spea_4037 NC_009901.1 4902556 4903692 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(4902556..4903692) Shewanella pealeana ATCC 700345 5664421 YP_001503883.1 CDS Spea_4038 NC_009901.1 4903734 4905293 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(4903734..4905293) Shewanella pealeana ATCC 700345 5664422 YP_001503884.1 CDS Spea_4039 NC_009901.1 4906269 4907042 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 4906269..4907042 Shewanella pealeana ATCC 700345 5664423 YP_001503885.1 CDS Spea_4040 NC_009901.1 4907056 4907997 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 4907056..4907997 Shewanella pealeana ATCC 700345 5664424 YP_001503886.1 CDS Spea_4041 NC_009901.1 4908089 4909378 D PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_2679 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4908089..4909378 Shewanella pealeana ATCC 700345 5664425 YP_001503887.1 CDS Spea_4042 NC_009901.1 4909375 4909662 D KEGG: slo:Shew_2680 putative ferredoxin; putative ferredoxin 4909375..4909662 Shewanella pealeana ATCC 700345 5664426 YP_001503888.1 CDS Spea_4043 NC_009901.1 4909938 4911296 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: slo:Shew_2681 general substrate transporter; general substrate transporter 4909938..4911296 Shewanella pealeana ATCC 700345 5664427 YP_001503889.1 CDS Spea_4044 NC_009901.1 4911516 4912655 D KEGG: slo:Shew_2682 hypothetical protein; hypothetical protein 4911516..4912655 Shewanella pealeana ATCC 700345 5664428 YP_001503890.1 CDS Spea_4045 NC_009901.1 4913065 4914483 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: sdn:Sden_2551 magnesium transporter; magnesium transporter 4913065..4914483 Shewanella pealeana ATCC 700345 5664429 YP_001503891.1 CDS Spea_4046 NC_009901.1 4914603 4915862 R hypothetical protein complement(4914603..4915862) Shewanella pealeana ATCC 700345 5664430 YP_001503892.1 CDS Spea_4047 NC_009901.1 4916115 4916876 R PFAM: protein of unknown function DUF548; KEGG: sfr:Sfri_3857 protein of unknown function DUF548; hypothetical protein complement(4916115..4916876) Shewanella pealeana ATCC 700345 5664431 YP_001503893.1 CDS Spea_4048 NC_009901.1 4917157 4919451 D KEGG: slo:Shew_2521 decaheme cytochrome c MtrF; hypothetical protein 4917157..4919451 Shewanella pealeana ATCC 700345 5664432 YP_001503894.1 CDS Spea_4049 NC_009901.1 4919772 4921013 D PFAM: transcriptional regulator domain protein; KEGG: sbm:Shew185_3867 transcriptional regulator, CadC; transcriptional regulator CadC 4919772..4921013 Shewanella pealeana ATCC 700345 5664433 YP_001503895.1 CDS Spea_4050 NC_009901.1 4921070 4921912 D PFAM: protein of unknown function DUF519; KEGG: spc:Sputcn32_0098 protein of unknown function DUF519; hypothetical protein 4921070..4921912 Shewanella pealeana ATCC 700345 5664434 YP_001503896.1 CDS Spea_4051 NC_009901.1 4922094 4922333 R KEGG: son:SO_4342 hypothetical protein; hypothetical protein complement(4922094..4922333) Shewanella pealeana ATCC 700345 5664435 YP_001503897.1 CDS Spea_4052 NC_009901.1 4922889 4923767 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppr:PBPRB1939 hypothetical transcriptional regulator; LysR family transcriptional regulator complement(4922889..4923767) Shewanella pealeana ATCC 700345 5664436 YP_001503898.1 CDS vmrA NC_009901.1 4924017 4925414 D sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; multidrug efflux pump VmrA 4924017..4925414 Shewanella pealeana ATCC 700345 5664437 YP_001503899.1 CDS Spea_4054 NC_009901.1 4925574 4926317 R PFAM: Lytic transglycosylase catalytic; KEGG: shm:Shewmr7_3923 lytic transglycosylase, catalytic; lytic transglycosylase complement(4925574..4926317) Shewanella pealeana ATCC 700345 5664438 YP_001503900.1 CDS Spea_4055 NC_009901.1 4926314 4927336 R KEGG: slo:Shew_3651 hypothetical protein; hypothetical protein complement(4926314..4927336) Shewanella pealeana ATCC 700345 5664439 YP_001503901.1 CDS Spea_4056 NC_009901.1 4927424 4927993 R PFAM: LemA family protein; KEGG: slo:Shew_3652 LemA family protein; LemA family protein complement(4927424..4927993) Shewanella pealeana ATCC 700345 5664440 YP_001503902.1 CDS Spea_4057 NC_009901.1 4929085 4930704 D PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: slo:Shew_3654 AbgT putative transporter; putative transporter AbgT 4929085..4930704 Shewanella pealeana ATCC 700345 5664441 YP_001503903.1 CDS Spea_4058 NC_009901.1 4931239 4932858 D PFAM: AbgT putative transporter; KEGG: saz:Sama_3559 putative efflux pump component MtrF; putative transporter AbgT 4931239..4932858 Shewanella pealeana ATCC 700345 5664442 YP_001503904.1 CDS Spea_4059 NC_009901.1 4933159 4933716 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: kpn:KPN_02690 phosphodiesterase; phosphodiesterase 4933159..4933716 Shewanella pealeana ATCC 700345 5664443 YP_001503905.1 CDS Spea_4060 NC_009901.1 4934084 4937242 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: slo:Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4934084..4937242) Shewanella pealeana ATCC 700345 5664444 YP_001503906.1 CDS Spea_4061 NC_009901.1 4937252 4938403 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: slo:Shew_0031 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4937252..4938403) Shewanella pealeana ATCC 700345 5664445 YP_001503907.1 CDS Spea_4062 NC_009901.1 4938769 4939458 R KEGG: sbl:Sbal_0127 conserved hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase complement(4938769..4939458) Shewanella pealeana ATCC 700345 5664446 YP_001503908.1 CDS Spea_4063 NC_009901.1 4939601 4940302 D PFAM: Glutathione S-transferase domain; KEGG: son:SO_4697 glutathione S-transferase; glutathione S-transferase domain-containing protein 4939601..4940302 Shewanella pealeana ATCC 700345 5664447 YP_001503909.1 CDS Spea_4064 NC_009901.1 4940533 4941105 R KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein complement(4940533..4941105) Shewanella pealeana ATCC 700345 5664448 YP_001503910.1 CDS Spea_4065 NC_009901.1 4941228 4943267 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: slo:Shew_3657 oligopeptidase A; oligopeptidase A complement(4941228..4943267) Shewanella pealeana ATCC 700345 5664449 YP_001503911.1 CDS Spea_4066 NC_009901.1 4943450 4944325 D KEGG: slo:Shew_3658 hypothetical protein; hypothetical protein 4943450..4944325 Shewanella pealeana ATCC 700345 5664450 YP_001503912.1 CDS Spea_4067 NC_009901.1 4944484 4944966 D KEGG: sbm:Shew185_4258 hypothetical protein; hypothetical protein 4944484..4944966 Shewanella pealeana ATCC 700345 5664451 YP_001503913.1 CDS Spea_4068 NC_009901.1 4945269 4946624 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4945269..4946624 Shewanella pealeana ATCC 700345 5664452 YP_001503914.1 CDS Spea_4069 NC_009901.1 4946724 4947107 D KEGG: sfr:Sfri_3563 transposase; transposase 4946724..4947107 Shewanella pealeana ATCC 700345 5664453 YP_001503915.1 CDS Spea_4070 NC_009901.1 4947224 4947952 D PFAM: Integrase catalytic region; KEGG: sfr:Sfri_3562 integrase, catalytic region; integrase catalytic subunit 4947224..4947952 Shewanella pealeana ATCC 700345 5664454 YP_001503916.1 CDS Spea_4071 NC_009901.1 4948040 4949992 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF1121 BCCT family transporter; choline/carnitine/betaine transporter complement(4948040..4949992) Shewanella pealeana ATCC 700345 5664455 YP_001503917.1 CDS Spea_4072 NC_009901.1 4950560 4951660 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ppr:PBPRB1413 putative NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase complement(4950560..4951660) Shewanella pealeana ATCC 700345 5664456 YP_001503918.1 CDS Spea_4073 NC_009901.1 4952031 4953134 D KEGG: shw:Sputw3181_0952 hypothetical protein; hypothetical protein 4952031..4953134 Shewanella pealeana ATCC 700345 5664457 YP_001503919.1 CDS Spea_4074 NC_009901.1 4954050 4955204 R KEGG: pin:Ping_2027 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; amidohydrolase complement(4954050..4955204) Shewanella pealeana ATCC 700345 5664458 YP_001503920.1 CDS Spea_4075 NC_009901.1 4955287 4956273 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: rci:RCIX1169 hypothetical protein; hypothetical protein complement(4955287..4956273) Shewanella pealeana ATCC 700345 5664459 YP_001503921.1 CDS Spea_4076 NC_009901.1 4956313 4957143 R PFAM: Asp/Glu racemase; KEGG: pin:Ping_2031 Asp/Glu racemase; Asp/Glu racemase complement(4956313..4957143) Shewanella pealeana ATCC 700345 5664460 YP_001503922.1 CDS Spea_4077 NC_009901.1 4957158 4958324 R PFAM: creatinase; peptidase M24; KEGG: pin:Ping_2026 peptidase M24; peptidase M24 complement(4957158..4958324) Shewanella pealeana ATCC 700345 5664461 YP_001503923.1 CDS Spea_4078 NC_009901.1 4958664 4959344 D PFAM: YheO domain protein; KEGG: sfr:Sfri_0689 YheO domain protein; YheO domain-containing protein 4958664..4959344 Shewanella pealeana ATCC 700345 5664462 YP_001503924.1 CDS Spea_4079 NC_009901.1 4959364 4959747 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vha:VIBHAR_02784 hypothetical protein; putative endoribonuclease L-PSP 4959364..4959747 Shewanella pealeana ATCC 700345 5664463 YP_001503925.1 CDS Spea_4080 NC_009901.1 4959855 4961033 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 4959855..4961033 Shewanella pealeana ATCC 700345 5664464 YP_001503926.1 CDS Spea_4081 NC_009901.1 4961634 4962614 D PFAM: conserved hypothetical protein; KEGG: sbm:Shew185_4296 conserved hypothetical protein 698; hypothetical protein 4961634..4962614 Shewanella pealeana ATCC 700345 5664465 YP_001503927.1 CDS Spea_4082 NC_009901.1 4963119 4963832 R PFAM: ThiJ/PfpI domain protein; KEGG: slo:Shew_3669 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(4963119..4963832) Shewanella pealeana ATCC 700345 5664466 YP_001503928.1 CDS Spea_4083 NC_009901.1 4964040 4965224 R PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: son:SO_4711 HD domain protein; metal dependent phosphohydrolase complement(4964040..4965224) Shewanella pealeana ATCC 700345 5664467 YP_001503929.1 CDS Spea_4084 NC_009901.1 4965704 4966462 R KEGG: slo:Shew_3672 hypothetical protein; hypothetical protein complement(4965704..4966462) Shewanella pealeana ATCC 700345 5664468 YP_001503930.1 CDS Spea_4085 NC_009901.1 4966547 4967083 R KEGG: sbm:Shew185_4307 hypothetical protein; hypothetical protein complement(4966547..4967083) Shewanella pealeana ATCC 700345 5664469 YP_001503931.1 CDS Spea_4086 NC_009901.1 4967080 4967751 R PFAM: cobalt transport protein; KEGG: sbl:Sbal_0091 cobalt transport protein; cobalt transport protein complement(4967080..4967751) Shewanella pealeana ATCC 700345 5664470 YP_001503932.1 CDS Spea_4087 NC_009901.1 4967741 4969105 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3959 ABC transporter related; ABC transporter-like protein complement(4967741..4969105) Shewanella pealeana ATCC 700345 5664471 YP_001503933.1 CDS Spea_4088 NC_009901.1 4969123 4971075 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbl:Sbal_0089 TonB-dependent receptor, plug; TonB-dependent receptor complement(4969123..4971075) Shewanella pealeana ATCC 700345 5664472 YP_001503934.1 CDS Spea_4089 NC_009901.1 4971514 4972872 D TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: slo:Shew_3677 isochorismate synthase; isochorismate synthase 4971514..4972872 Shewanella pealeana ATCC 700345 5664473 YP_001503935.1 CDS Spea_4090 NC_009901.1 4973090 4973749 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: shw:Sputw3181_0078 hypothetical protein; hypothetical protein 4973090..4973749 Shewanella pealeana ATCC 700345 5664474 YP_001503936.1 CDS Spea_4091 NC_009901.1 4973872 4974330 D PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_4074 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4973872..4974330 Shewanella pealeana ATCC 700345 5664475 YP_001503937.1 CDS Spea_4092 NC_009901.1 4975105 4977225 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_3681 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(4975105..4977225) Shewanella pealeana ATCC 700345 5664476 YP_001503938.1 CDS Spea_4093 NC_009901.1 4977275 4978648 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: slo:Shew_3682 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma54 specific transcriptional regulator complement(4977275..4978648) Shewanella pealeana ATCC 700345 5664477 YP_001503939.1 CDS Spea_4094 NC_009901.1 4978937 4979749 D KEGG: slo:Shew_3683 extracellular solute-binding protein, family 1; extracellular solute-binding protein 4978937..4979749 Shewanella pealeana ATCC 700345 5664478 YP_001503940.1 CDS Spea_4095 NC_009901.1 4979746 4980453 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: slo:Shew_3684 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4979746..4980453 Shewanella pealeana ATCC 700345 5664479 YP_001503941.1 CDS Spea_4096 NC_009901.1 4980459 4981205 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3685 ABC transporter-related protein; ABC transporter-like protein 4980459..4981205 Shewanella pealeana ATCC 700345 5664480 YP_001503942.1 CDS Spea_4097 NC_009901.1 4981258 4981860 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: slo:Shew_3686 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 4981258..4981860 Shewanella pealeana ATCC 700345 5664481 YP_001503943.1 CDS Spea_4098 NC_009901.1 4981869 4983668 D TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: slo:Shew_3687 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4981869..4983668 Shewanella pealeana ATCC 700345 5664482 YP_001503944.1 CDS Spea_4099 NC_009901.1 4983689 4984675 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4983689..4984675 Shewanella pealeana ATCC 700345 5664483 YP_001503945.1 CDS Spea_4100 NC_009901.1 4984821 4985825 R KEGG: vvu:VV2_1156 membrane-fusion protein; membrane-fusion protein complement(4984821..4985825) Shewanella pealeana ATCC 700345 5664484 YP_001503946.1 CDS Spea_4101 NC_009901.1 4986700 4988730 R SMART: Ig domain protein group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein complement(4986700..4988730) Shewanella pealeana ATCC 700345 5664485 YP_001503947.1 CDS Spea_4102 NC_009901.1 4989087 4989473 R hypothetical protein complement(4989087..4989473) Shewanella pealeana ATCC 700345 5664486 YP_001503948.1 CDS Spea_4103 NC_009901.1 4990869 4991327 D KEGG: shw:Sputw3181_0068 hypothetical protein; hypothetical protein 4990869..4991327 Shewanella pealeana ATCC 700345 5664487 YP_001503949.1 CDS Spea_4104 NC_009901.1 4991397 4992212 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4991397..4992212 Shewanella pealeana ATCC 700345 5664488 YP_001503950.1 CDS Spea_4105 NC_009901.1 4992251 4992916 R PFAM: SNARE associated Golgi protein; KEGG: shm:Shewmr7_3976 hypothetical protein; hypothetical protein complement(4992251..4992916) Shewanella pealeana ATCC 700345 5664489 YP_001503951.1 CDS Spea_4106 NC_009901.1 4993008 4994507 R KEGG: sfr:Sfri_3925 hypothetical protein; hypothetical protein complement(4993008..4994507) Shewanella pealeana ATCC 700345 5664490 YP_001503952.1 CDS coaD NC_009901.1 4994514 4994993 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(4994514..4994993) Shewanella pealeana ATCC 700345 5664491 YP_001503953.1 CDS Spea_4108 NC_009901.1 4995189 4995878 R TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: sbl:Sbal_0295 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein complement(4995189..4995878) Shewanella pealeana ATCC 700345 5664492 YP_001503954.1 CDS Spea_4109 NC_009901.1 4995928 4997265 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: slo:Shew_0098 integral membrane sensor signal transduction histidine kinase; histidine kinase complement(4995928..4997265) Shewanella pealeana ATCC 700345 5664493 YP_001503955.1 CDS Spea_4110 NC_009901.1 4997234 4997911 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(4997234..4997911) Shewanella pealeana ATCC 700345 5664494 YP_001503956.1 CDS Spea_4111 NC_009901.1 4997915 4998436 R KEGG: shw:Sputw3181_0250 hypothetical protein; hypothetical protein complement(4997915..4998436) Shewanella pealeana ATCC 700345 5664495 YP_001503957.1 CDS Spea_4112 NC_009901.1 4998479 4998829 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_0095 conserved hypothetical protein 156; hypothetical protein complement(4998479..4998829) Shewanella pealeana ATCC 700345 5664496 YP_001503958.1 CDS Spea_4113 NC_009901.1 4998961 5000067 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_0094 ABC transporter-related protein; ABC transporter-like protein complement(4998961..5000067) Shewanella pealeana ATCC 700345 5664497 YP_001503959.1 CDS Spea_4114 NC_009901.1 5000048 5000728 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbm:Shew185_0282 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(5000048..5000728) Shewanella pealeana ATCC 700345 5664498 YP_001503960.1 CDS Spea_4115 NC_009901.1 5000728 5001507 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: slo:Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(5000728..5001507) Shewanella pealeana ATCC 700345 5664499 YP_001503961.1 CDS Spea_4116 NC_009901.1 5001551 5001997 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein complement(5001551..5001997) Shewanella pealeana ATCC 700345 5664500 YP_001503962.1 CDS Spea_4117 NC_009901.1 5001999 5002250 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: shn:Shewana3_0276 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 complement(5001999..5002250) Shewanella pealeana ATCC 700345 5664501 YP_001503963.1 CDS moaC NC_009901.1 5002259 5002801 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(5002259..5002801) Shewanella pealeana ATCC 700345 5664502 YP_001503964.1 CDS Spea_4119 NC_009901.1 5002816 5003340 R TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: slo:Shew_0088 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(5002816..5003340) Shewanella pealeana ATCC 700345 5664503 YP_001503965.1 CDS moaA NC_009901.1 5003438 5004418 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(5003438..5004418) Shewanella pealeana ATCC 700345 5664504 YP_001503966.1 CDS Spea_4121 NC_009901.1 5004800 5006449 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: slo:Shew_0086 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 5004800..5006449 Shewanella pealeana ATCC 700345 5664505 YP_001503967.1 CDS Spea_4122 NC_009901.1 5006569 5006919 R KEGG: slo:Shew_0084 hypothetical protein; hypothetical protein complement(5006569..5006919) Shewanella pealeana ATCC 700345 5664506 YP_001503968.1 CDS Spea_4123 NC_009901.1 5006963 5007661 R PFAM: 3-alpha domain protein; MOSC domain containing protein; KEGG: shw:Sputw3181_0239 MOSC domain containing protein; MOSC domain-containing protein complement(5006963..5007661) Shewanella pealeana ATCC 700345 5664507 YP_001503969.1 CDS Spea_4124 NC_009901.1 5007771 5009228 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbl:Sbal_0279 diguanylate cyclase; diguanylate cyclase complement(5007771..5009228) Shewanella pealeana ATCC 700345 5664508 YP_001503970.1 CDS Spea_4125 NC_009901.1 5009988 5010830 R PFAM: PfkB domain protein; KEGG: she:Shewmr4_0267 PfkB domain protein; ribokinase-like domain-containing protein complement(5009988..5010830) Shewanella pealeana ATCC 700345 5664509 YP_001503971.1 CDS Spea_4126 NC_009901.1 5011375 5012703 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(5011375..5012703) Shewanella pealeana ATCC 700345 5664510 YP_001503972.1 CDS Spea_4127 NC_009901.1 5012969 5013952 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbm:Shew185_4112 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(5012969..5013952) Shewanella pealeana ATCC 700345 5664511 YP_001503973.1 CDS Spea_4128 NC_009901.1 5014033 5014602 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saz:Sama_3608 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin complement(5014033..5014602) Shewanella pealeana ATCC 700345 5664512 YP_001503974.1 CDS Spea_4129 NC_009901.1 5014632 5017505 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: saz:Sama_3609 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase complement(5014632..5017505) Shewanella pealeana ATCC 700345 5664513 YP_001503975.1 CDS Spea_4130 NC_009901.1 5017524 5017721 R TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0062 hypothetical protein; formate dehydrogenase region TAT target complement(5017524..5017721) Shewanella pealeana ATCC 700345 5664514 YP_001503976.1 CDS Spea_4131 NC_009901.1 5019053 5020033 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbm:Shew185_4112 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(5019053..5020033) Shewanella pealeana ATCC 700345 5664515 YP_001503977.1 CDS Spea_4132 NC_009901.1 5020109 5020678 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saz:Sama_3608 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin complement(5020109..5020678) Shewanella pealeana ATCC 700345 5664516 YP_001503978.1 CDS Spea_4133 NC_009901.1 5020708 5023563 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0063 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(5020708..5023563) Shewanella pealeana ATCC 700345 5664517 YP_001503979.1 CDS Spea_4134 NC_009901.1 5023582 5023779 R TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0062 hypothetical protein; formate dehydrogenase region TAT target complement(5023582..5023779) Shewanella pealeana ATCC 700345 5664518 YP_001503980.1 CDS Spea_4135 NC_009901.1 5024654 5025661 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: slo:Shew_0061 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(5024654..5025661) Shewanella pealeana ATCC 700345 5664519 YP_001503981.1 CDS Spea_4136 NC_009901.1 5025715 5026302 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: shw:Sputw3181_3872 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5025715..5026302) Shewanella pealeana ATCC 700345 5664520 YP_001503982.1 CDS Spea_4137 NC_009901.1 5026329 5029178 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: slo:Shew_0059 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(5026329..5029178) Shewanella pealeana ATCC 700345 5664521 YP_001503983.1 CDS Spea_4138 NC_009901.1 5029194 5029394 R TIGRFAM: Formate dehydrogenase region TAT target; KEGG: slo:Shew_0058 twin-arginine translocation pathway signal; formate dehydrogenase region TAT target complement(5029194..5029394) Shewanella pealeana ATCC 700345 5664522 YP_001503984.1 CDS Spea_4139 NC_009901.1 5029569 5030243 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: slo:Shew_0057 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(5029569..5030243) Shewanella pealeana ATCC 700345 5664523 YP_001503985.1 CDS Spea_4140 NC_009901.1 5030254 5031933 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5030254..5031933) Shewanella pealeana ATCC 700345 5664524 YP_001503986.1 CDS Spea_4141 NC_009901.1 5032081 5032731 R KEGG: spc:Sputcn32_0341 hypothetical protein; hypothetical protein complement(5032081..5032731) Shewanella pealeana ATCC 700345 5664525 YP_001503987.1 CDS Spea_4142 NC_009901.1 5032728 5033195 R KEGG: slo:Shew_0054 hypothetical protein; hypothetical protein complement(5032728..5033195) Shewanella pealeana ATCC 700345 5664526 YP_001503988.1 CDS Spea_4143 NC_009901.1 5033480 5034322 D PFAM: formate dehydrogenase subunit FdhD; KEGG: slo:Shew_0053 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 5033480..5034322 Shewanella pealeana ATCC 700345 5664527 YP_001503989.1 CDS Spea_4144 NC_009901.1 5034370 5035275 D KEGG: slo:Shew_0052 DNA binding domain, excisionase family; DNA-binding domain-containing protein 5034370..5035275 Shewanella pealeana ATCC 700345 5664528 YP_001503990.1 CDS Spea_4145 NC_009901.1 5035287 5035658 R KEGG: sdn:Sden_1152 hypothetical protein; hypothetical protein complement(5035287..5035658) Shewanella pealeana ATCC 700345 5664529 YP_001503991.1 CDS Spea_4146 NC_009901.1 5035780 5036922 R PFAM: protein of unknown function DUF890; KEGG: slo:Shew_3741 protein of unknown function DUF890; putative SAM-dependent methyltransferase complement(5035780..5036922) Shewanella pealeana ATCC 700345 5664530 YP_001503992.1 CDS Spea_4147 NC_009901.1 5036980 5037381 R PFAM: flagellar basal body-associated protein FliL; KEGG: sfr:Sfri_0049 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein complement(5036980..5037381) Shewanella pealeana ATCC 700345 5664531 YP_001503993.1 CDS Spea_4148 NC_009901.1 5037533 5038090 D PFAM: Chorismate lyase; KEGG: sbl:Sbal_4229 chorismate lyase; chorismate lyase 5037533..5038090 Shewanella pealeana ATCC 700345 5664532 YP_001503994.1 CDS Spea_4149 NC_009901.1 5038145 5040961 R PFAM: PKD domain containing protein; peptidase M6 immune inhibitor A; KEGG: slo:Shew_3744 peptidase M6, immune inhibitor A; peptidase M6 immune inhibitor A complement(5038145..5040961) Shewanella pealeana ATCC 700345 5664533 YP_001503995.1 CDS Spea_4150 NC_009901.1 5040963 5041262 R KEGG: sdn:Sden_0093 hypothetical protein; hypothetical protein complement(5040963..5041262) Shewanella pealeana ATCC 700345 5664534 YP_001503996.1 CDS Spea_4151 NC_009901.1 5041406 5043571 R PFAM: glycoside hydrolase family 37; KEGG: slo:Shew_3745 glycoside hydrolase, family 37; glycoside hydrolase family protein complement(5041406..5043571) Shewanella pealeana ATCC 700345 5664535 YP_001503997.1 CDS Spea_4152 NC_009901.1 5043761 5044357 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: slo:Shew_3746 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein complement(5043761..5044357) Shewanella pealeana ATCC 700345 5664536 YP_001503998.1 CDS Spea_4153 NC_009901.1 5044575 5046227 D KEGG: slo:Shew_3747 hypothetical protein; hypothetical protein 5044575..5046227 Shewanella pealeana ATCC 700345 5664537 YP_001503999.1 CDS Spea_4154 NC_009901.1 5046308 5047084 D PFAM: protein of unknown function DUF833; KEGG: slo:Shew_3748 protein of unknown function DUF833; hypothetical protein 5046308..5047084 Shewanella pealeana ATCC 700345 5664538 YP_001504000.1 CDS Spea_4155 NC_009901.1 5047314 5047736 R KEGG: slo:Shew_3749 hypothetical protein; hypothetical protein complement(5047314..5047736) Shewanella pealeana ATCC 700345 5664539 YP_001504001.1 CDS Spea_4156 NC_009901.1 5047871 5048422 D PFAM: phospholipid/glycerol acyltransferase; KEGG: slo:Shew_3750 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 5047871..5048422 Shewanella pealeana ATCC 700345 5664540 YP_001504002.1 CDS Spea_4157 NC_009901.1 5048487 5049113 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: slo:Shew_3751 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 5048487..5049113 Shewanella pealeana ATCC 700345 5664541 YP_001504003.1 CDS Spea_4158 NC_009901.1 5049203 5050462 R PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0112 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(5049203..5050462) Shewanella pealeana ATCC 700345 5664542 YP_001504004.1 CDS Spea_4159 NC_009901.1 5050651 5051187 D KEGG: slo:Shew_3753 hypothetical protein; hypothetical protein 5050651..5051187 Shewanella pealeana ATCC 700345 5664543 YP_001504005.1 CDS Spea_4160 NC_009901.1 5051557 5052708 D PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO_A0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 5051557..5052708 Shewanella pealeana ATCC 700345 5664544 YP_001504006.1 CDS Spea_4161 NC_009901.1 5052776 5053171 D KEGG: vfi:VF1351 hypothetical protein; hypothetical protein 5052776..5053171 Shewanella pealeana ATCC 700345 5664545 YP_001504007.1 CDS Spea_4162 NC_009901.1 5053349 5054011 D KEGG: slo:Shew_3754 hypothetical protein; hypothetical protein 5053349..5054011 Shewanella pealeana ATCC 700345 5664546 YP_001504008.1 CDS Spea_4163 NC_009901.1 5054242 5054982 D PFAM: protein of unknown function DUF81; KEGG: bce:BC1620 hypothetical membrane protein; hypothetical protein 5054242..5054982 Shewanella pealeana ATCC 700345 5664547 YP_001504009.1 CDS Spea_4164 NC_009901.1 5055063 5056082 D KEGG: bbr:BB4545 D-cysteine desulfhydrase; 1-aminocyclopropane-1-carboxylate deaminase 5055063..5056082 Shewanella pealeana ATCC 700345 5664548 YP_001504010.1 CDS Spea_4165 NC_009901.1 5056193 5057599 D PFAM: Na+/H+ antiporter NhaC; KEGG: dde:Dde_2580 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 5056193..5057599 Shewanella pealeana ATCC 700345 5664549 YP_001504011.1 CDS Spea_4166 NC_009901.1 5057672 5058058 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vha:VIBHAR_03649 hypothetical protein; putative endoribonuclease L-PSP 5057672..5058058 Shewanella pealeana ATCC 700345 5664550 YP_001504012.1 CDS Spea_4167 NC_009901.1 5058192 5059094 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sal:Sala_2416 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5058192..5059094) Shewanella pealeana ATCC 700345 5664551 YP_001504013.1 CDS Spea_4168 NC_009901.1 5059501 5061033 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(5059501..5061033) Shewanella pealeana ATCC 700345 5664552 YP_001504014.1 CDS Spea_4169 NC_009901.1 5061037 5062725 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(5061037..5062725) Shewanella pealeana ATCC 700345 5664553 YP_001504015.1 CDS Spea_4170 NC_009901.1 5062857 5063561 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: slo:Shew_3758 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor complement(5062857..5063561) Shewanella pealeana ATCC 700345 5664554 YP_001504016.1 CDS Spea_4171 NC_009901.1 5063725 5064969 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 5063725..5064969 Shewanella pealeana ATCC 700345 5664555 YP_001504017.1 CDS Spea_4172 NC_009901.1 5065347 5066006 R KEGG: vpa:VPA0799 hypothetical protein; hypothetical protein complement(5065347..5066006) Shewanella pealeana ATCC 700345 5664556 YP_001504018.1 CDS Spea_4173 NC_009901.1 5065999 5067246 R SMART: AAA ATPase; KEGG: vpa:VPA0800 hypothetical protein; ATPase AAA complement(5065999..5067246) Shewanella pealeana ATCC 700345 5664557 YP_001504019.1 CDS Spea_4174 NC_009901.1 5067715 5070093 R PFAM: protein of unknown function DUF214; KEGG: sus:Acid_5729 protein of unknown function DUF214; hypothetical protein complement(5067715..5070093) Shewanella pealeana ATCC 700345 5664558 YP_001504020.1 CDS Spea_4175 NC_009901.1 5070083 5070796 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_0308 ABC transporter ATP-binding protein; ABC transporter-like protein complement(5070083..5070796) Shewanella pealeana ATCC 700345 5664559 YP_001504021.1 CDS Spea_4176 NC_009901.1 5070783 5072054 R KEGG: cps:CPS_2118 efflux transporter, RND family, MFP subunit; hypothetical protein complement(5070783..5072054) Shewanella pealeana ATCC 700345 5664560 YP_001504022.1 CDS Spea_4177 NC_009901.1 5072226 5072699 D hypothetical protein 5072226..5072699 Shewanella pealeana ATCC 700345 5664561 YP_001504023.1 CDS Spea_4178 NC_009901.1 5072934 5073983 D PFAM: Lytic transglycosylase catalytic; KEGG: ilo:IL0198 membrane-bound lytic murein transglycosylase C; lytic transglycosylase 5072934..5073983 Shewanella pealeana ATCC 700345 5664562 YP_001504024.1 CDS Spea_4179 NC_009901.1 5074485 5075696 R KEGG: sfr:Sfri_3965 hypothetical protein; hypothetical protein complement(5074485..5075696) Shewanella pealeana ATCC 700345 5664563 YP_001504025.1 CDS Spea_4180 NC_009901.1 5076055 5076735 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0085 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 5076055..5076735 Shewanella pealeana ATCC 700345 5664564 YP_001504026.1 CDS Spea_4181 NC_009901.1 5076788 5077741 R KEGG: shw:Sputw3181_4009 hypothetical protein; hypothetical protein complement(5076788..5077741) Shewanella pealeana ATCC 700345 5664565 YP_001504027.1 CDS Spea_4182 NC_009901.1 5077868 5078629 R KEGG: ppr:PBPRB0920 hypothetical protein; hypothetical protein complement(5077868..5078629) Shewanella pealeana ATCC 700345 5664566 YP_001504028.1 CDS Spea_4183 NC_009901.1 5078750 5079178 D PFAM: thioesterase superfamily protein; KEGG: sdn:Sden_0074 thioesterase superfamily; thioesterase superfamily protein 5078750..5079178 Shewanella pealeana ATCC 700345 5664567 YP_001504029.1 CDS Spea_4184 NC_009901.1 5079259 5079507 D KEGG: son:SO_0079 hypothetical protein; hypothetical protein 5079259..5079507 Shewanella pealeana ATCC 700345 5664568 YP_001504030.1 CDS Spea_4185 NC_009901.1 5079545 5079949 R PFAM: thioesterase superfamily protein; KEGG: sfr:Sfri_3970 thioesterase superfamily protein; thioesterase superfamily protein complement(5079545..5079949) Shewanella pealeana ATCC 700345 5664569 YP_001504031.1 CDS Spea_4186 NC_009901.1 5080306 5082102 R PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_0078 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(5080306..5082102) Shewanella pealeana ATCC 700345 5664570 YP_001504032.1 CDS Spea_4187 NC_009901.1 5082393 5083697 R KEGG: slo:Shew_3777 hypothetical protein; hypothetical protein complement(5082393..5083697) Shewanella pealeana ATCC 700345 5664571 YP_001504033.1 CDS Spea_4188 NC_009901.1 5083694 5084536 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdn:Sden_0070 ABC transporter related; ABC transporter-like protein complement(5083694..5084536) Shewanella pealeana ATCC 700345 5664572 YP_001504034.1 CDS Spea_4189 NC_009901.1 5084582 5084956 R PFAM: regulatory protein GntR HTH; KEGG: slo:Shew_3779 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5084582..5084956) Shewanella pealeana ATCC 700345 5664573 YP_001504035.1 CDS Spea_4190 NC_009901.1 5085047 5086606 D PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: slo:Shew_3780 TAP domain protein; TAP domain-containing protein 5085047..5086606 Shewanella pealeana ATCC 700345 5664574 YP_001504036.1 CDS Spea_4191 NC_009901.1 5086617 5087351 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: slo:Shew_3781 ABC transporter-related protein; ABC transporter-like protein 5086617..5087351 Shewanella pealeana ATCC 700345 5664575 YP_001504037.1 CDS Spea_4192 NC_009901.1 5087376 5088521 D KEGG: slo:Shew_3782 ABC-2 type transporter; ABC-2 type transporter 5087376..5088521 Shewanella pealeana ATCC 700345 5664576 YP_001504038.1 CDS Spea_4193 NC_009901.1 5088600 5088830 D KEGG: shw:Sputw3181_4024 hypothetical protein; hypothetical protein 5088600..5088830 Shewanella pealeana ATCC 700345 5664577 YP_001504039.1 CDS Spea_4194 NC_009901.1 5088869 5089876 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: slo:Shew_3785 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5088869..5089876) Shewanella pealeana ATCC 700345 5664578 YP_001504040.1 CDS Spea_4195 NC_009901.1 5090092 5090274 D KEGG: slo:Shew_3786 hypothetical protein; hypothetical protein 5090092..5090274 Shewanella pealeana ATCC 700345 5664579 YP_001504041.1 CDS Spea_4196 NC_009901.1 5090334 5091992 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2343 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis sensory transducer complement(5090334..5091992) Shewanella pealeana ATCC 700345 5664580 YP_001504042.1 CDS mogA NC_009901.1 5092682 5093215 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(5092682..5093215) Shewanella pealeana ATCC 700345 5664581 YP_001504043.1 CDS Spea_4198 NC_009901.1 5093613 5094890 D KEGG: bth:BT_1162 hypothetical protein; hypothetical protein 5093613..5094890 Shewanella pealeana ATCC 700345 5664582 YP_001504044.1 CDS Spea_4199 NC_009901.1 5094913 5095860 D KEGG: vpa:VP1357 hypothetical protein; hypothetical protein 5094913..5095860 Shewanella pealeana ATCC 700345 5664583 YP_001504045.1 CDS Spea_4200 NC_009901.1 5095957 5096427 R PFAM: NLP/P60 protein; KEGG: sbm:Shew185_0058 NLP/P60 protein; NLP/P60 protein complement(5095957..5096427) Shewanella pealeana ATCC 700345 5664584 YP_001504046.1 CDS Spea_4201 NC_009901.1 5097036 5098181 R PFAM: ABC-2 type transporter; KEGG: cps:CPS_1248 ABC transporter, permease protein; ABC-2 type transporter complement(5097036..5098181) Shewanella pealeana ATCC 700345 5664585 YP_001504047.1 CDS Spea_4202 NC_009901.1 5098178 5099185 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1249 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5098178..5099185) Shewanella pealeana ATCC 700345 5664586 YP_001504048.1 CDS Spea_4203 NC_009901.1 5099182 5100132 R KEGG: cps:CPS_1250 conserved hypothetical protein; hypothetical protein complement(5099182..5100132) Shewanella pealeana ATCC 700345 5664587 YP_001504049.1 CDS Spea_4204 NC_009901.1 5100691 5101287 R KEGG: vvy:VVA0335 outer membrane protein; outer membrane protein complement(5100691..5101287) Shewanella pealeana ATCC 700345 5664588 YP_001504050.1 CDS Spea_4205 NC_009901.1 5101289 5102584 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: vvy:VVA0334 agglutination protein; TolC family type I secretion outer membrane protein complement(5101289..5102584) Shewanella pealeana ATCC 700345 5664589 YP_001504051.1 CDS Spea_4206 NC_009901.1 5102597 5103910 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: vvu:VV2_1516 secretion protein, HlyD family; HlyD family type I secretion membrane fusion protein complement(5102597..5103910) Shewanella pealeana ATCC 700345 5664590 YP_001504052.1 CDS Spea_4207 NC_009901.1 5103907 5106027 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VVA0332 putative RTX toxin secretion ATP-binding protein; ABC transporter-like protein complement(5103907..5106027) Shewanella pealeana ATCC 700345 5664591 YP_001504053.1 CDS Spea_4208 NC_009901.1 5106024 5116025 R KEGG: vvu:VV2_1514 autotransporter adhesin; autotransporter adhesin complement(5106024..5116025) Shewanella pealeana ATCC 700345 5664592 YP_001504054.1 CDS Spea_4209 NC_009901.1 5116263 5117177 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vpa:VPA0216 putative transcription regulator protein; LysR family transcriptional regulator complement(5116263..5117177) Shewanella pealeana ATCC 700345 5664593 YP_001504055.1 CDS Spea_4210 NC_009901.1 5117312 5117770 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_1566 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5117312..5117770 Shewanella pealeana ATCC 700345 5664594 YP_001504056.1 CDS Spea_4211 NC_009901.1 5117802 5118182 D KEGG: cps:CPS_3499 hypothetical protein; hypothetical protein 5117802..5118182 Shewanella pealeana ATCC 700345 5664595 YP_001504057.1 CDS Spea_4212 NC_009901.1 5118290 5119474 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: slo:Shew_3802 HI0933 family protein; hypothetical protein complement(5118290..5119474) Shewanella pealeana ATCC 700345 5664596 YP_001504058.1 CDS Spea_4213 NC_009901.1 5119732 5120748 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: sdn:Sden_3445 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 5119732..5120748 Shewanella pealeana ATCC 700345 5664597 YP_001504059.1 CDS gpsA NC_009901.1 5121506 5122525 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(5121506..5122525) Shewanella pealeana ATCC 700345 5664598 YP_001504060.1 CDS Spea_4215 NC_009901.1 5122530 5123015 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(5122530..5123015) Shewanella pealeana ATCC 700345 5664599 YP_001504061.1 CDS Spea_4216 NC_009901.1 5123240 5123674 R PFAM: Rhodanese domain protein; KEGG: slo:Shew_3805 rhodanese domain protein; rhodanese domain-containing protein complement(5123240..5123674) Shewanella pealeana ATCC 700345 5664600 YP_001504062.1 CDS Spea_4217 NC_009901.1 5123913 5125457 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5123913..5125457 Shewanella pealeana ATCC 700345 5664601 YP_001504063.1 CDS Spea_4218 NC_009901.1 5125468 5126601 D PFAM: peptidase M23B; KEGG: slo:Shew_3807 peptidase M23B; peptidase M23B 5125468..5126601 Shewanella pealeana ATCC 700345 5664602 YP_001504064.1 CDS Spea_4219 NC_009901.1 5126635 5127840 D KEGG: slo:Shew_3808 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; SMART: PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 5126635..5127840 Shewanella pealeana ATCC 700345 5664603 YP_001504065.1 CDS Spea_4220 NC_009901.1 5127847 5128602 D PFAM: protein of unknown function DUF610 YibQ; KEGG: slo:Shew_3809 protein of unknown function DUF610, YibQ; hypothetical protein 5127847..5128602 Shewanella pealeana ATCC 700345 5664604 YP_001504066.1 CDS Spea_4221 NC_009901.1 5128588 5129037 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: shn:Shewana3_0047 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(5128588..5129037) Shewanella pealeana ATCC 700345 5664605 YP_001504067.1 CDS Spea_4222 NC_009901.1 5129088 5129342 R PFAM: protein of unknown function UPF0153; KEGG: slo:Shew_3811 protein of unknown function UPF0153; hypothetical protein complement(5129088..5129342) Shewanella pealeana ATCC 700345 5664606 YP_001504068.1 CDS Spea_4223 NC_009901.1 5135594 5137015 R TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; KEGG: slo:Shew_3812 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type accessory protein FixG complement(5135594..5137015) Shewanella pealeana ATCC 700345 5664839 YP_001504069.1 CDS Spea_4224 NC_009901.1 5137104 5137457 D KEGG: sbm:Shew185_4357 hypothetical protein; hypothetical protein 5137104..5137457 Shewanella pealeana ATCC 700345 5664608 YP_001504070.1 CDS Spea_4225 NC_009901.1 5137610 5138512 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 5137610..5138512 Shewanella pealeana ATCC 700345 5664609 YP_001504071.1 CDS Spea_4226 NC_009901.1 5138714 5138911 D KEGG: saz:Sama_3636 hypothetical protein; hypothetical protein 5138714..5138911 Shewanella pealeana ATCC 700345 5664610 YP_001504072.1 CDS Spea_4227 NC_009901.1 5138920 5140116 R PFAM: sodium/hydrogen exchanger; KEGG: slo:Shew_3170 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(5138920..5140116) Shewanella pealeana ATCC 700345 5664611 YP_001504073.1 CDS Spea_4228 NC_009901.1 5140657 5141466 D TIGRFAM: phosphate binding protein; KEGG: son:SO_4292 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate-binding protein 5140657..5141466 Shewanella pealeana ATCC 700345 5664612 YP_001504074.1 CDS Spea_4229 NC_009901.1 5141544 5142449 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO_4291 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5141544..5142449 Shewanella pealeana ATCC 700345 5664613 YP_001504075.1 CDS Spea_4230 NC_009901.1 5142449 5143300 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO_4290 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5142449..5143300 Shewanella pealeana ATCC 700345 5664614 YP_001504076.1 CDS Spea_4231 NC_009901.1 5143311 5144060 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 5143311..5144060 Shewanella pealeana ATCC 700345 5664615 YP_001504077.1 CDS Spea_4232 NC_009901.1 5144238 5144513 D KEGG: cps:CPS_2434 hypothetical protein; hypothetical protein 5144238..5144513 Shewanella pealeana ATCC 700345 5664616 YP_001504078.1 CDS Spea_4233 NC_009901.1 5144832 5145875 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 5144832..5145875 Shewanella pealeana ATCC 700345 5664617 YP_001504079.1 CDS Spea_4234 NC_009901.1 5146047 5147876 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5146047..5147876) Shewanella pealeana ATCC 700345 5664618 YP_001504080.1 CDS Spea_4235 NC_009901.1 5147965 5148771 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: she:Shewmr4_3921 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(5147965..5148771) Shewanella pealeana ATCC 700345 5664619 YP_001504081.1 CDS Spea_4236 NC_009901.1 5148872 5151004 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: slo:Shew_3841 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5148872..5151004) Shewanella pealeana ATCC 700345 5664620 YP_001504082.1 CDS Spea_4237 NC_009901.1 5151269 5152633 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: slo:Shew_3842 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(5151269..5152633) Shewanella pealeana ATCC 700345 5664621 YP_001504083.1 CDS Spea_4238 NC_009901.1 5152750 5153106 R PFAM: DsrE family protein; KEGG: slo:Shew_3843 DsrE family protein; DsrE family protein complement(5152750..5153106) Shewanella pealeana ATCC 700345 5664622 YP_001504084.1 CDS atpC NC_009901.1 5153462 5153890 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5153462..5153890) Shewanella pealeana ATCC 700345 5664623 YP_001504085.1 CDS Spea_4240 NC_009901.1 5153922 5155298 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5153922..5155298) Shewanella pealeana ATCC 700345 5664624 YP_001504086.1 CDS Spea_4241 NC_009901.1 5155334 5156194 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5155334..5156194) Shewanella pealeana ATCC 700345 5664625 YP_001504087.1 CDS Spea_4242 NC_009901.1 5156243 5157784 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5156243..5157784) Shewanella pealeana ATCC 700345 5664626 YP_001504088.1 CDS Spea_4243 NC_009901.1 5157799 5158332 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(5157799..5158332) Shewanella pealeana ATCC 700345 5664627 YP_001504089.1 CDS Spea_4244 NC_009901.1 5158349 5158819 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5158349..5158819) Shewanella pealeana ATCC 700345 5664628 YP_001504090.1 CDS Spea_4245 NC_009901.1 5158847 5159104 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5158847..5159104) Shewanella pealeana ATCC 700345 5664629 YP_001504091.1 CDS Spea_4246 NC_009901.1 5159138 5159968 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5159138..5159968) Shewanella pealeana ATCC 700345 5664630 YP_001504092.1 CDS Spea_4247 NC_009901.1 5159981 5160364 R PFAM: ATP synthase I chain; KEGG: slo:Shew_3852 ATP synthase I chain; ATP synthase I chain complement(5159981..5160364) Shewanella pealeana ATCC 700345 5664631 YP_001504093.1 CDS Spea_4248 NC_009901.1 5160588 5161472 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: saz:Sama_3652 ParB family protein; parB-like partition protein complement(5160588..5161472) Shewanella pealeana ATCC 700345 5664632 YP_001504094.1 CDS Spea_4249 NC_009901.1 5161482 5162270 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: slo:Shew_3854 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(5161482..5162270) Shewanella pealeana ATCC 700345 5664633 YP_001504095.1 CDS gidB NC_009901.1 5162498 5163121 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(5162498..5163121) Shewanella pealeana ATCC 700345 5664634 YP_001504096.1 CDS Spea_4251 NC_009901.1 5163240 5165129 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5163240..5165129) Shewanella pealeana ATCC 700345 5664635 YP_001504097.1 CDS Spea_4252 NC_009901.1 5165587 5166027 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(5165587..5166027) Shewanella pealeana ATCC 700345 5664636 YP_001504098.1 CDS Spea_4253 NC_009901.1 5166414 5167382 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ppr:PBPRB1417 hypothetical inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 5166414..5167382 Shewanella pealeana ATCC 700345 5664637 YP_001504099.1 CDS Spea_4254 NC_009901.1 5167442 5168086 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sfr:Sfri_3118 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(5167442..5168086) Shewanella pealeana ATCC 700345 5664638 YP_001504100.1 CDS Spea_4255 NC_009901.1 5168386 5168916 D KEGG: slo:Shew_0364 MshA, mannose-sensitive haemaglutinin; MshA, mannose-sensitive hemaglutinin 5168386..5168916 Shewanella pealeana ATCC 700345 5664639 YP_001504101.1 CDS trmE NC_009901.1 5170510 5171871 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5170510..5171871) Shewanella pealeana ATCC 700345 5664640 YP_001504102.1 CDS Spea_4257 NC_009901.1 5171988 5173625 R PFAM: 60 kDa inner membrane insertion protein; KEGG: slo:Shew_3866 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(5171988..5173625) Shewanella pealeana ATCC 700345 5664641 YP_001504103.1 CDS Spea_4258 NC_009901.1 5173629 5173883 R PFAM: protein of unknown function DUF37; KEGG: shw:Sputw3181_4093 protein of unknown function DUF37; hypothetical protein complement(5173629..5173883) Shewanella pealeana ATCC 700345 5664642 YP_001504104.1 CDS rnpA NC_009901.1 5173850 5174212 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(5173850..5174212) Shewanella pealeana ATCC 700345 5664643 YP_001504105.1 CDS rpmH NC_009901.1 5174221 5174358 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(5174221..5174358) Shewanella pealeana ATCC 700345 5664644 Spea_R0008 tRNA Spea_R0008 NC_009901.1 183892 183968 D tRNA-Ile 183892..183968 Shewanella pealeana ATCC 700345 5664651 Spea_R0009 tRNA Spea_R0009 NC_009901.1 184034 184109 D tRNA-Ala 184034..184109 Shewanella pealeana ATCC 700345 5664652 Spea_R0012 tRNA Spea_R0012 NC_009901.1 187724 187800 D tRNA-Asp 187724..187800 Shewanella pealeana ATCC 700345 5664655 Spea_R0013 tRNA Spea_R0013 NC_009901.1 191614 191689 D tRNA-Thr 191614..191689 Shewanella pealeana ATCC 700345 5660571 Spea_R0014 tRNA Spea_R0014 NC_009901.1 191698 191782 D tRNA-Tyr 191698..191782 Shewanella pealeana ATCC 700345 5664657 Spea_R0015 tRNA Spea_R0015 NC_009901.1 191818 191891 D tRNA-Gly 191818..191891 Shewanella pealeana ATCC 700345 5664658 Spea_R0022 tRNA Spea_R0022 NC_009901.1 248738 248813 D tRNA-Thr 248738..248813 Shewanella pealeana ATCC 700345 5664666 Spea_R0025 tRNA Spea_R0025 NC_009901.1 416766 416842 D tRNA-Arg 416766..416842 Shewanella pealeana ATCC 700345 5660762 Spea_R0026 tRNA Spea_R0026 NC_009901.1 416882 416957 D tRNA-His 416882..416957 Shewanella pealeana ATCC 700345 5664670 Spea_R0027 tRNA Spea_R0027 NC_009901.1 416999 417075 D tRNA-Pro 416999..417075 Shewanella pealeana ATCC 700345 5664671 Spea_R0028 tRNA Spea_R0028 NC_009901.1 417134 417210 D tRNA-Pro 417134..417210 Shewanella pealeana ATCC 700345 5664672 Spea_R0032 tRNA Spea_R0032 NC_009901.1 552634 552724 R tRNA-Sec complement(552634..552724) Shewanella pealeana ATCC 700345 5660844 Spea_R0033 tRNA Spea_R0033 NC_009901.1 641376 641466 D tRNA-Ser 641376..641466 Shewanella pealeana ATCC 700345 5660927 Spea_R0034 tRNA Spea_R0034 NC_009901.1 642639 642729 D tRNA-Ser 642639..642729 Shewanella pealeana ATCC 700345 5664678 Spea_R0036 tRNA Spea_R0036 NC_009901.1 647468 647544 D tRNA-Ile 647468..647544 Shewanella pealeana ATCC 700345 5664680 Spea_R0037 tRNA Spea_R0037 NC_009901.1 647610 647685 D tRNA-Ala 647610..647685 Shewanella pealeana ATCC 700345 5664681 Spea_R0040 tRNA Spea_R0040 NC_009901.1 728115 728199 D tRNA-Leu 728115..728199 Shewanella pealeana ATCC 700345 5660994 Spea_R0041 tRNA Spea_R0041 NC_009901.1 1168942 1169018 R tRNA-Met complement(1168942..1169018) Shewanella pealeana ATCC 700345 5661357 Spea_R0042 tRNA Spea_R0042 NC_009901.1 1339706 1339781 R tRNA-Thr complement(1339706..1339781) Shewanella pealeana ATCC 700345 5661504 Spea_R0043 tRNA Spea_R0043 NC_009901.1 1339834 1339909 R tRNA-Phe complement(1339834..1339909) Shewanella pealeana ATCC 700345 5664688 Spea_R0044 tRNA Spea_R0044 NC_009901.1 1340449 1340524 R tRNA-Thr complement(1340449..1340524) Shewanella pealeana ATCC 700345 5664689 Spea_R0045 tRNA Spea_R0045 NC_009901.1 1340577 1340652 R tRNA-Phe complement(1340577..1340652) Shewanella pealeana ATCC 700345 5664690 Spea_R0046 tRNA Spea_R0046 NC_009901.1 1342467 1342542 R tRNA-Thr complement(1342467..1342542) Shewanella pealeana ATCC 700345 5661506 Spea_R0047 tRNA Spea_R0047 NC_009901.1 1342595 1342670 R tRNA-Phe complement(1342595..1342670) Shewanella pealeana ATCC 700345 5664692 Spea_R0048 tRNA Spea_R0048 NC_009901.1 1456724 1456815 D tRNA-Ser 1456724..1456815 Shewanella pealeana ATCC 700345 5661597 Spea_R0049 tRNA Spea_R0049 NC_009901.1 1456837 1456913 D tRNA-Arg 1456837..1456913 Shewanella pealeana ATCC 700345 5664694 Spea_R0050 tRNA Spea_R0050 NC_009901.1 1456944 1457020 D tRNA-Arg 1456944..1457020 Shewanella pealeana ATCC 700345 5664695 Spea_R0051 tRNA Spea_R0051 NC_009901.1 1457053 1457129 D tRNA-Arg 1457053..1457129 Shewanella pealeana ATCC 700345 5664696 Spea_R0052 tRNA Spea_R0052 NC_009901.1 1457160 1457236 D tRNA-Arg 1457160..1457236 Shewanella pealeana ATCC 700345 5664697 Spea_R0053 tRNA Spea_R0053 NC_009901.1 1457270 1457346 D tRNA-Arg 1457270..1457346 Shewanella pealeana ATCC 700345 5664698 Spea_R0054 tRNA Spea_R0054 NC_009901.1 1457356 1457447 D tRNA-Ser 1457356..1457447 Shewanella pealeana ATCC 700345 5664699 Spea_R0055 tRNA Spea_R0055 NC_009901.1 1457524 1457600 D tRNA-Arg 1457524..1457600 Shewanella pealeana ATCC 700345 5664700 Spea_R0056 tRNA Spea_R0056 NC_009901.1 1457636 1457712 D tRNA-Arg 1457636..1457712 Shewanella pealeana ATCC 700345 5664701 Spea_R0057 tRNA Spea_R0057 NC_009901.1 1457722 1457813 D tRNA-Ser 1457722..1457813 Shewanella pealeana ATCC 700345 5664702 Spea_R0059 tRNA Spea_R0059 NC_009901.1 1627363 1627438 R tRNA-Arg complement(1627363..1627438) Shewanella pealeana ATCC 700345 5661731 Spea_R0060 tRNA Spea_R0060 NC_009901.1 1770483 1770558 R tRNA-Val complement(1770483..1770558) Shewanella pealeana ATCC 700345 5661853 Spea_R0061 tRNA Spea_R0061 NC_009901.1 1770596 1770671 R tRNA-Val complement(1770596..1770671) Shewanella pealeana ATCC 700345 5664708 Spea_R0062 tRNA Spea_R0062 NC_009901.1 1770709 1770784 R tRNA-Val complement(1770709..1770784) Shewanella pealeana ATCC 700345 5664709 Spea_R0063 tRNA Spea_R0063 NC_009901.1 1770822 1770897 R tRNA-Val complement(1770822..1770897) Shewanella pealeana ATCC 700345 5664710 Spea_R0064 tRNA Spea_R0064 NC_009901.1 1770935 1771010 R tRNA-Val complement(1770935..1771010) Shewanella pealeana ATCC 700345 5664711 Spea_R0065 tRNA Spea_R0065 NC_009901.1 1771048 1771123 R tRNA-Val complement(1771048..1771123) Shewanella pealeana ATCC 700345 5664712 Spea_R0066 tRNA Spea_R0066 NC_009901.1 1771161 1771236 R tRNA-Val complement(1771161..1771236) Shewanella pealeana ATCC 700345 5664713 Spea_R0067 tRNA Spea_R0067 NC_009901.1 1771274 1771349 R tRNA-Val complement(1771274..1771349) Shewanella pealeana ATCC 700345 5664714 Spea_R0068 tRNA Spea_R0068 NC_009901.1 1771387 1771462 R tRNA-Val complement(1771387..1771462) Shewanella pealeana ATCC 700345 5664715 Spea_R0069 tRNA Spea_R0069 NC_009901.1 1771500 1771575 R tRNA-Val complement(1771500..1771575) Shewanella pealeana ATCC 700345 5664716 Spea_R0070 tRNA Spea_R0070 NC_009901.1 1771615 1771690 R tRNA-Val complement(1771615..1771690) Shewanella pealeana ATCC 700345 5664717 Spea_R0071 tRNA Spea_R0071 NC_009901.1 1773910 1773985 D tRNA-Ala 1773910..1773985 Shewanella pealeana ATCC 700345 5661854 Spea_R0072 tRNA Spea_R0072 NC_009901.1 1774066 1774141 D tRNA-Glu 1774066..1774141 Shewanella pealeana ATCC 700345 5664719 Spea_R0073 tRNA Spea_R0073 NC_009901.1 1774244 1774319 D tRNA-Glu 1774244..1774319 Shewanella pealeana ATCC 700345 5664720 Spea_R0074 tRNA Spea_R0074 NC_009901.1 1774422 1774497 D tRNA-Glu 1774422..1774497 Shewanella pealeana ATCC 700345 5664721 Spea_R0075 tRNA Spea_R0075 NC_009901.1 1774600 1774675 D tRNA-Glu 1774600..1774675 Shewanella pealeana ATCC 700345 5664722 Spea_R0076 tRNA Spea_R0076 NC_009901.1 1774778 1774853 D tRNA-Glu 1774778..1774853 Shewanella pealeana ATCC 700345 5664723 Spea_R0077 tRNA Spea_R0077 NC_009901.1 1774956 1775031 D tRNA-Glu 1774956..1775031 Shewanella pealeana ATCC 700345 5664724 Spea_R0078 tRNA Spea_R0078 NC_009901.1 1775134 1775209 D tRNA-Glu 1775134..1775209 Shewanella pealeana ATCC 700345 5664725 Spea_R0079 tRNA Spea_R0079 NC_009901.1 1775312 1775387 D tRNA-Glu 1775312..1775387 Shewanella pealeana ATCC 700345 5664726 Spea_R0080 tRNA Spea_R0080 NC_009901.1 1775641 1775716 D tRNA-Glu 1775641..1775716 Shewanella pealeana ATCC 700345 5664727 Spea_R0081 tRNA Spea_R0081 NC_009901.1 1775819 1775894 D tRNA-Glu 1775819..1775894 Shewanella pealeana ATCC 700345 5664728 Spea_R0082 tRNA Spea_R0082 NC_009901.1 1775997 1776072 D tRNA-Glu 1775997..1776072 Shewanella pealeana ATCC 700345 5664729 Spea_R0083 tRNA Spea_R0083 NC_009901.1 1776175 1776250 D tRNA-Glu 1776175..1776250 Shewanella pealeana ATCC 700345 5664730 Spea_R0084 tRNA Spea_R0084 NC_009901.1 1776353 1776428 D tRNA-Glu 1776353..1776428 Shewanella pealeana ATCC 700345 5664731 Spea_R0085 tRNA Spea_R0085 NC_009901.1 1776476 1776551 D tRNA-Ala 1776476..1776551 Shewanella pealeana ATCC 700345 5664732 Spea_R0089 tRNA Spea_R0089 NC_009901.1 2143274 2143350 R tRNA-Pro complement(2143274..2143350) Shewanella pealeana ATCC 700345 5662158 Spea_R0090 tRNA Spea_R0090 NC_009901.1 2366164 2366240 R tRNA-Met complement(2366164..2366240) Shewanella pealeana ATCC 700345 5662340 Spea_R0091 tRNA Spea_R0091 NC_009901.1 2366281 2366357 R tRNA-Met complement(2366281..2366357) Shewanella pealeana ATCC 700345 5664741 Spea_R0092 tRNA Spea_R0092 NC_009901.1 2366398 2366474 R tRNA-Met complement(2366398..2366474) Shewanella pealeana ATCC 700345 5664742 Spea_R0093 tRNA Spea_R0093 NC_009901.1 2366515 2366591 R tRNA-Met complement(2366515..2366591) Shewanella pealeana ATCC 700345 5664743 Spea_R0094 tRNA Spea_R0094 NC_009901.1 2376218 2376308 D tRNA-Ser 2376218..2376308 Shewanella pealeana ATCC 700345 5662347 Spea_R0095 tRNA Spea_R0095 NC_009901.1 2379767 2379842 D tRNA-Gly 2379767..2379842 Shewanella pealeana ATCC 700345 5662350 Spea_R0096 tRNA Spea_R0096 NC_009901.1 2379856 2379929 D tRNA-Cys 2379856..2379929 Shewanella pealeana ATCC 700345 5664746 Spea_R0097 tRNA Spea_R0097 NC_009901.1 2380015 2380100 D tRNA-Leu 2380015..2380100 Shewanella pealeana ATCC 700345 5664747 Spea_R0098 tRNA Spea_R0098 NC_009901.1 2550857 2550932 D tRNA-Gly 2550857..2550932 Shewanella pealeana ATCC 700345 5662500 Spea_R0099 tRNA Spea_R0099 NC_009901.1 2550946 2551019 D tRNA-Cys 2550946..2551019 Shewanella pealeana ATCC 700345 5664749 Spea_R0100 tRNA Spea_R0100 NC_009901.1 2551115 2551200 D tRNA-Leu 2551115..2551200 Shewanella pealeana ATCC 700345 5664750 Spea_R0101 tRNA Spea_R0101 NC_009901.1 2551835 2551908 D tRNA-Cys 2551835..2551908 Shewanella pealeana ATCC 700345 5664751 Spea_R0102 tRNA Spea_R0102 NC_009901.1 2552004 2552089 D tRNA-Leu 2552004..2552089 Shewanella pealeana ATCC 700345 5664752 Spea_R0103 tRNA Spea_R0103 NC_009901.1 2552569 2552642 D tRNA-Cys 2552569..2552642 Shewanella pealeana ATCC 700345 5664753 Spea_R0104 tRNA Spea_R0104 NC_009901.1 2552775 2552860 D tRNA-Leu 2552775..2552860 Shewanella pealeana ATCC 700345 5664754 Spea_R0105 tRNA Spea_R0105 NC_009901.1 2558019 2558109 D tRNA-Ser 2558019..2558109 Shewanella pealeana ATCC 700345 5662507 Spea_R0106 tRNA Spea_R0106 NC_009901.1 2717566 2717655 R tRNA-Ser complement(2717566..2717655) Shewanella pealeana ATCC 700345 5662635 Spea_R0107 tRNA Spea_R0107 NC_009901.1 2759730 2759806 R tRNA-Met complement(2759730..2759806) Shewanella pealeana ATCC 700345 5662672 Spea_R0108 tRNA Spea_R0108 NC_009901.1 2759996 2760072 R tRNA-Met complement(2759996..2760072) Shewanella pealeana ATCC 700345 5664758 Spea_R0109 tRNA Spea_R0109 NC_009901.1 2760118 2760194 R tRNA-Val complement(2760118..2760194) Shewanella pealeana ATCC 700345 5664759 Spea_R0110 tRNA Spea_R0110 NC_009901.1 2760197 2760273 R tRNA-Met complement(2760197..2760273) Shewanella pealeana ATCC 700345 5664760 Spea_R0111 tRNA Spea_R0111 NC_009901.1 2760309 2760385 R tRNA-Val complement(2760309..2760385) Shewanella pealeana ATCC 700345 5664761 Spea_R0112 tRNA Spea_R0112 NC_009901.1 2760399 2760475 R tRNA-Met complement(2760399..2760475) Shewanella pealeana ATCC 700345 5664762 Spea_R0113 tRNA Spea_R0113 NC_009901.1 2858823 2858907 D tRNA-Tyr 2858823..2858907 Shewanella pealeana ATCC 700345 5662740 Spea_R0114 tRNA Spea_R0114 NC_009901.1 2858938 2859022 D tRNA-Tyr 2858938..2859022 Shewanella pealeana ATCC 700345 5664764 Spea_R0115 tRNA Spea_R0115 NC_009901.1 2859108 2859192 D tRNA-Tyr 2859108..2859192 Shewanella pealeana ATCC 700345 5664765 Spea_R0116 tRNA Spea_R0116 NC_009901.1 2859300 2859384 D tRNA-Tyr 2859300..2859384 Shewanella pealeana ATCC 700345 5664766 Spea_R0117 tRNA Spea_R0117 NC_009901.1 2859492 2859576 D tRNA-Tyr 2859492..2859576 Shewanella pealeana ATCC 700345 5664767 Spea_R0118 tRNA Spea_R0118 NC_009901.1 2866268 2866343 D tRNA-Asn 2866268..2866343 Shewanella pealeana ATCC 700345 5662745 Spea_R0119 tRNA Spea_R0119 NC_009901.1 2866389 2866464 D tRNA-Asn 2866389..2866464 Shewanella pealeana ATCC 700345 5664769 Spea_R0120 tRNA Spea_R0120 NC_009901.1 2866506 2866581 D tRNA-Asn 2866506..2866581 Shewanella pealeana ATCC 700345 5664770 Spea_R0121 tRNA Spea_R0121 NC_009901.1 2866608 2866683 D tRNA-Asn 2866608..2866683 Shewanella pealeana ATCC 700345 5664771 Spea_R0122 tRNA Spea_R0122 NC_009901.1 2866716 2866791 D tRNA-Asn 2866716..2866791 Shewanella pealeana ATCC 700345 5664772 Spea_R0123 tRNA Spea_R0123 NC_009901.1 2866825 2866900 D tRNA-Asn 2866825..2866900 Shewanella pealeana ATCC 700345 5664773 Spea_R0124 tRNA Spea_R0124 NC_009901.1 2866941 2867016 D tRNA-Asn 2866941..2867016 Shewanella pealeana ATCC 700345 5664774 Spea_R0125 tRNA Spea_R0125 NC_009901.1 2929429 2929505 R tRNA-Asp complement(2929429..2929505) Shewanella pealeana ATCC 700345 5662794 Spea_R0126 tRNA Spea_R0126 NC_009901.1 2929603 2929679 R tRNA-Asp complement(2929603..2929679) Shewanella pealeana ATCC 700345 5664776 Spea_R0127 tRNA Spea_R0127 NC_009901.1 2929777 2929853 R tRNA-Asp complement(2929777..2929853) Shewanella pealeana ATCC 700345 5664777 Spea_R0128 tRNA Spea_R0128 NC_009901.1 2929937 2930013 R tRNA-Asp complement(2929937..2930013) Shewanella pealeana ATCC 700345 5664778 Spea_R0129 tRNA Spea_R0129 NC_009901.1 3120289 3120364 R tRNA-Lys complement(3120289..3120364) Shewanella pealeana ATCC 700345 5662955 Spea_R0130 tRNA Spea_R0130 NC_009901.1 3120423 3120498 R tRNA-Lys complement(3120423..3120498) Shewanella pealeana ATCC 700345 5664780 Spea_R0131 tRNA Spea_R0131 NC_009901.1 3120557 3120632 R tRNA-Lys complement(3120557..3120632) Shewanella pealeana ATCC 700345 5664781 Spea_R0132 tRNA Spea_R0132 NC_009901.1 3120691 3120766 R tRNA-Lys complement(3120691..3120766) Shewanella pealeana ATCC 700345 5664782 Spea_R0133 tRNA Spea_R0133 NC_009901.1 3120826 3120901 R tRNA-Lys complement(3120826..3120901) Shewanella pealeana ATCC 700345 5664783 Spea_R0134 tRNA Spea_R0134 NC_009901.1 3120959 3121034 R tRNA-Lys complement(3120959..3121034) Shewanella pealeana ATCC 700345 5664784 Spea_R0135 tRNA Spea_R0135 NC_009901.1 3121093 3121168 R tRNA-Lys complement(3121093..3121168) Shewanella pealeana ATCC 700345 5664785 Spea_R0136 tRNA Spea_R0136 NC_009901.1 3121227 3121302 R tRNA-Lys complement(3121227..3121302) Shewanella pealeana ATCC 700345 5664786 Spea_R0137 tRNA Spea_R0137 NC_009901.1 3121362 3121437 R tRNA-Lys complement(3121362..3121437) Shewanella pealeana ATCC 700345 5664787 Spea_R0138 tRNA Spea_R0138 NC_009901.1 3121496 3121571 R tRNA-Lys complement(3121496..3121571) Shewanella pealeana ATCC 700345 5664788 Spea_R0139 tRNA Spea_R0139 NC_009901.1 3121631 3121706 R tRNA-Lys complement(3121631..3121706) Shewanella pealeana ATCC 700345 5664789 Spea_R0140 tRNA Spea_R0140 NC_009901.1 3121766 3121841 R tRNA-Lys complement(3121766..3121841) Shewanella pealeana ATCC 700345 5664790 Spea_R0142 tRNA Spea_R0142 NC_009901.1 3269860 3269935 R tRNA-His complement(3269860..3269935) Shewanella pealeana ATCC 700345 5663076 Spea_R0143 tRNA Spea_R0143 NC_009901.1 3269944 3270020 R tRNA-Arg complement(3269944..3270020) Shewanella pealeana ATCC 700345 5664793 Spea_R0144 tRNA Spea_R0144 NC_009901.1 3270084 3270160 R tRNA-Pro complement(3270084..3270160) Shewanella pealeana ATCC 700345 5664794 Spea_R0145 tRNA Spea_R0145 NC_009901.1 3757983 3758059 R tRNA-Met complement(3757983..3758059) Shewanella pealeana ATCC 700345 5663453 Spea_R0146 tRNA Spea_R0146 NC_009901.1 3758163 3758249 R tRNA-Leu complement(3758163..3758249) Shewanella pealeana ATCC 700345 5664799 Spea_R0147 tRNA Spea_R0147 NC_009901.1 3835257 3835331 R tRNA-Gln complement(3835257..3835331) Shewanella pealeana ATCC 700345 5663522 Spea_R0148 tRNA Spea_R0148 NC_009901.1 3835383 3835467 R tRNA-Leu complement(3835383..3835467) Shewanella pealeana ATCC 700345 5664802 Spea_R0149 tRNA Spea_R0149 NC_009901.1 3835599 3835673 R tRNA-Gln complement(3835599..3835673) Shewanella pealeana ATCC 700345 5664803 Spea_R0150 tRNA Spea_R0150 NC_009901.1 3835694 3835778 R tRNA-Leu complement(3835694..3835778) Shewanella pealeana ATCC 700345 5664804 Spea_R0151 tRNA Spea_R0151 NC_009901.1 3835875 3835949 R tRNA-Gln complement(3835875..3835949) Shewanella pealeana ATCC 700345 5664805 Spea_R0152 tRNA Spea_R0152 NC_009901.1 3835999 3836083 R tRNA-Leu complement(3835999..3836083) Shewanella pealeana ATCC 700345 5664806 Spea_R0153 tRNA Spea_R0153 NC_009901.1 3836295 3836371 R tRNA-Met complement(3836295..3836371) Shewanella pealeana ATCC 700345 5664807 Spea_R0154 tRNA Spea_R0154 NC_009901.1 3836377 3836451 R tRNA-Gln complement(3836377..3836451) Shewanella pealeana ATCC 700345 5664808 Spea_R0155 tRNA Spea_R0155 NC_009901.1 3836499 3836583 R tRNA-Leu complement(3836499..3836583) Shewanella pealeana ATCC 700345 5664809 Spea_R0156 tRNA Spea_R0156 NC_009901.1 3836639 3836715 R tRNA-Met complement(3836639..3836715) Shewanella pealeana ATCC 700345 5664810 Spea_R0157 tRNA Spea_R0157 NC_009901.1 3836721 3836795 R tRNA-Gln complement(3836721..3836795) Shewanella pealeana ATCC 700345 5664811 Spea_R0158 tRNA Spea_R0158 NC_009901.1 3836843 3836927 R tRNA-Leu complement(3836843..3836927) Shewanella pealeana ATCC 700345 5664812 Spea_R0159 tRNA Spea_R0159 NC_009901.1 3836983 3837059 R tRNA-Met complement(3836983..3837059) Shewanella pealeana ATCC 700345 5664813 Spea_R0160 tRNA Spea_R0160 NC_009901.1 3862885 3862961 R tRNA-Trp complement(3862885..3862961) Shewanella pealeana ATCC 700345 5663548 Spea_R0161 tRNA Spea_R0161 NC_009901.1 3863129 3863205 R tRNA-Trp complement(3863129..3863205) Shewanella pealeana ATCC 700345 5664815 Spea_R0165 tRNA Spea_R0165 NC_009901.1 3882154 3882229 D tRNA-Phe 3882154..3882229 Shewanella pealeana ATCC 700345 5663558 Spea_R0166 tRNA Spea_R0166 NC_009901.1 4331488 4331563 R tRNA-Gly complement(4331488..4331563) Shewanella pealeana ATCC 700345 5663933 Spea_R0167 tRNA Spea_R0167 NC_009901.1 4331694 4331769 R tRNA-Gly complement(4331694..4331769) Shewanella pealeana ATCC 700345 5664824 Spea_R0168 tRNA Spea_R0168 NC_009901.1 4331817 4331892 R tRNA-Gly complement(4331817..4331892) Shewanella pealeana ATCC 700345 5664825 Spea_R0169 tRNA Spea_R0169 NC_009901.1 4332055 4332130 R tRNA-Gly complement(4332055..4332130) Shewanella pealeana ATCC 700345 5664826 Spea_R0170 tRNA Spea_R0170 NC_009901.1 4332147 4332222 R tRNA-Gly complement(4332147..4332222) Shewanella pealeana ATCC 700345 5664827 Spea_R0171 tRNA Spea_R0171 NC_009901.1 4332271 4332346 R tRNA-Gly complement(4332271..4332346) Shewanella pealeana ATCC 700345 5664828 Spea_R0174 tRNA Spea_R0174 NC_009901.1 4620395 4620470 R tRNA-Ala complement(4620395..4620470) Shewanella pealeana ATCC 700345 5664831 Spea_R0175 tRNA Spea_R0175 NC_009901.1 4620536 4620612 R tRNA-Ile complement(4620536..4620612) Shewanella pealeana ATCC 700345 5664832 Spea_R0177 tRNA Spea_R0177 NC_009901.1 5129770 5129846 R tRNA-Asp complement(5129770..5129846) Shewanella pealeana ATCC 700345 5664607 Spea_R0001 rRNA Spea_R0001 NC_009901.1 45147 46681 D 16S ribosomal RNA 45147..46681 Shewanella pealeana ATCC 700345 5660444 Spea_R0002 rRNA Spea_R0002 NC_009901.1 47032 49926 D 23S ribosomal RNA 47032..49926 Shewanella pealeana ATCC 700345 5664645 Spea_R0003 rRNA Spea_R0003 NC_009901.1 50059 50174 D 5S ribosomal RNA 50059..50174 Shewanella pealeana ATCC 700345 5664646 Spea_R0004 rRNA Spea_R0004 NC_009901.1 51501 53035 D 16S ribosomal RNA 51501..53035 Shewanella pealeana ATCC 700345 5664647 Spea_R0005 rRNA Spea_R0005 NC_009901.1 53386 56280 D 23S ribosomal RNA 53386..56280 Shewanella pealeana ATCC 700345 5664648 Spea_R0006 rRNA Spea_R0006 NC_009901.1 56413 56528 D 5S ribosomal RNA 56413..56528 Shewanella pealeana ATCC 700345 5664649 Spea_R0007 rRNA Spea_R0007 NC_009901.1 182282 183816 D 16S ribosomal RNA 182282..183816 Shewanella pealeana ATCC 700345 5660568 Spea_R0010 rRNA Spea_R0010 NC_009901.1 184481 187375 D 23S ribosomal RNA 184481..187375 Shewanella pealeana ATCC 700345 5664653 Spea_R0011 rRNA Spea_R0011 NC_009901.1 187508 187623 D 5S ribosomal RNA 187508..187623 Shewanella pealeana ATCC 700345 5664654 Spea_R0016 rRNA Spea_R0016 NC_009901.1 235193 236727 D 16S ribosomal RNA 235193..236727 Shewanella pealeana ATCC 700345 5660622 Spea_R0017 rRNA Spea_R0017 NC_009901.1 237113 240007 D 23S ribosomal RNA 237113..240007 Shewanella pealeana ATCC 700345 5664661 Spea_R0018 rRNA Spea_R0018 NC_009901.1 240140 240255 D 5S ribosomal RNA 240140..240255 Shewanella pealeana ATCC 700345 5664662 Spea_R0019 rRNA Spea_R0019 NC_009901.1 243642 245176 D 16S ribosomal RNA 243642..245176 Shewanella pealeana ATCC 700345 5660623 Spea_R0020 rRNA Spea_R0020 NC_009901.1 245526 248420 D 23S ribosomal RNA 245526..248420 Shewanella pealeana ATCC 700345 5664664 Spea_R0021 rRNA Spea_R0021 NC_009901.1 248554 248669 D 5S ribosomal RNA 248554..248669 Shewanella pealeana ATCC 700345 5664665 Spea_R0023 rRNA Spea_R0023 NC_009901.1 248831 248946 D 5S ribosomal RNA 248831..248946 Shewanella pealeana ATCC 700345 5664667 Spea_R0029 rRNA Spea_R0029 NC_009901.1 493722 495256 D 16S ribosomal RNA 493722..495256 Shewanella pealeana ATCC 700345 5660806 Spea_R0030 rRNA Spea_R0030 NC_009901.1 495607 498501 D 23S ribosomal RNA 495607..498501 Shewanella pealeana ATCC 700345 5664674 Spea_R0031 rRNA Spea_R0031 NC_009901.1 498634 498749 D 5S ribosomal RNA 498634..498749 Shewanella pealeana ATCC 700345 5664675 Spea_R0035 rRNA Spea_R0035 NC_009901.1 645858 647392 D 16S ribosomal RNA 645858..647392 Shewanella pealeana ATCC 700345 5660928 Spea_R0038 rRNA Spea_R0038 NC_009901.1 648022 650916 D 23S ribosomal RNA 648022..650916 Shewanella pealeana ATCC 700345 5664682 Spea_R0039 rRNA Spea_R0039 NC_009901.1 651094 651209 D 5S ribosomal RNA 651094..651209 Shewanella pealeana ATCC 700345 5664683 Spea_R0086 rRNA Spea_R0086 NC_009901.1 2081308 2082842 D 16S ribosomal RNA 2081308..2082842 Shewanella pealeana ATCC 700345 5662109 Spea_R0087 rRNA Spea_R0087 NC_009901.1 2083192 2086086 D 23S ribosomal RNA 2083192..2086086 Shewanella pealeana ATCC 700345 5664735 Spea_R0088 rRNA Spea_R0088 NC_009901.1 2086219 2086334 D 5S ribosomal RNA 2086219..2086334 Shewanella pealeana ATCC 700345 5664736 Spea_R0162 rRNA Spea_R0162 NC_009901.1 3867049 3867164 R 5S ribosomal RNA complement(3867049..3867164) Shewanella pealeana ATCC 700345 5663551 Spea_R0163 rRNA Spea_R0163 NC_009901.1 3867297 3870191 R 23S ribosomal RNA complement(3867297..3870191) Shewanella pealeana ATCC 700345 5664817 Spea_R0164 rRNA Spea_R0164 NC_009901.1 3870541 3872075 R 16S ribosomal RNA complement(3870541..3872075) Shewanella pealeana ATCC 700345 5664818 Spea_R0172 rRNA Spea_R0172 NC_009901.1 4616881 4616996 R 5S ribosomal RNA complement(4616881..4616996) Shewanella pealeana ATCC 700345 5664187 Spea_R0173 rRNA Spea_R0173 NC_009901.1 4617129 4620023 R 23S ribosomal RNA complement(4617129..4620023) Shewanella pealeana ATCC 700345 5664830 Spea_R0176 rRNA Spea_R0176 NC_009901.1 4620688 4622222 R 16S ribosomal RNA complement(4620688..4622222) Shewanella pealeana ATCC 700345 5664833 Spea_R0178 rRNA Spea_R0178 NC_009901.1 5129947 5130062 R 5S ribosomal RNA complement(5129947..5130062) Shewanella pealeana ATCC 700345 5664836 Spea_R0179 rRNA Spea_R0179 NC_009901.1 5130196 5133090 R 23S ribosomal RNA complement(5130196..5133090) Shewanella pealeana ATCC 700345 5664837 Spea_R0180 rRNA Spea_R0180 NC_009901.1 5133441 5134975 R 16S ribosomal RNA complement(5133441..5134975) Shewanella pealeana ATCC 700345 5664838