-- dump date   	20140620_064446
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_009438.1	PROVISIONAL REFSEQ: This record has not yet been subject to finalPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681.PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.govPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim FredricksonPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov)PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org)PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for thePROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by thePROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativePROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376)PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeatPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeat unit is 552 bps in length.  Each copy of the repeat unit differs byPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeat unit is 552 bps in length.  Each copy of the repeat unit differs by 3 SNPs. We have resolved this tandem making the assumption thatPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeat unit is 552 bps in length.  Each copy of the repeat unit differs by 3 SNPs. We have resolved this tandem making the assumption that there are 14 copies.  However, it is unresolved on the number ofPROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeat unit is 552 bps in length.  Each copy of the repeat unit differs by 3 SNPs. We have resolved this tandem making the assumption that there are 14 copies.  However, it is unresolved on the number of copies. The tandem is located from 4171003-4178703.PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org)           James Tiedje (tiedjej@msu.edu)           Jim Fredrickson (Jim.fredrickson@pnl.gov)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeat unit is 552 bps in length.  Each copy of the repeat unit differs by 3 SNPs. We have resolved this tandem making the assumption that there are 14 copies.  However, it is unresolved on the number of copies. The tandem is located from 4171003-4178703. COMPLETENESS: full length.