-- dump date 20140620_064446 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 319224000001 SEQ_END SEQ_END NC_009438.1 4659220 4659220 DR NC_009438.1; contig end 4659220..4659220 Shewanella putrefaciens CN-32 YP_001181536.1 CDS dnaA NC_009438.1 147 1532 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 147..1532 Shewanella putrefaciens CN-32 5079955 YP_001181537.1 CDS Sputcn32_0002 NC_009438.1 1553 2653 D KEGG: shm:Shewmr7_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1553..2653 Shewanella putrefaciens CN-32 5081515 YP_001181538.1 CDS recF NC_009438.1 2850 3932 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2850..3932 Shewanella putrefaciens CN-32 5081478 YP_001181539.1 CDS Sputcn32_0004 NC_009438.1 3949 6366 D KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3949..6366 Shewanella putrefaciens CN-32 5081479 YP_001181540.1 CDS Sputcn32_0005 NC_009438.1 6568 7614 D PFAM: HDOD; KEGG: shm:Shewmr7_0007 putative signal transduction protein; putative signal transduction protein 6568..7614 Shewanella putrefaciens CN-32 5081480 YP_001181541.1 CDS glyS NC_009438.1 7702 9771 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(7702..9771) Shewanella putrefaciens CN-32 5081481 YP_001181542.1 CDS glyQ NC_009438.1 9782 10687 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(9782..10687) Shewanella putrefaciens CN-32 5081482 YP_001181543.1 CDS Sputcn32_0008 NC_009438.1 10805 11401 D KEGG: shm:Shewmr7_0010 DNA-3-methyladenine glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 10805..11401 Shewanella putrefaciens CN-32 5081483 YP_001181544.1 CDS Sputcn32_0009 NC_009438.1 11525 14713 R PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: she:Shewmr4_0011 amidohydrolase; amidohydrolase complement(11525..14713) Shewanella putrefaciens CN-32 5081484 YP_001181545.1 CDS Sputcn32_0010 NC_009438.1 14935 15387 R KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein complement(14935..15387) Shewanella putrefaciens CN-32 5081485 YP_001181546.1 CDS Sputcn32_0011 NC_009438.1 15432 15677 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(15432..15677) Shewanella putrefaciens CN-32 5081486 YP_001181547.1 CDS fadA NC_009438.1 15908 17071 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(15908..17071) Shewanella putrefaciens CN-32 5081487 YP_001181548.1 CDS fadB NC_009438.1 17094 19244 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(17094..19244) Shewanella putrefaciens CN-32 5081488 YP_001181549.1 CDS Sputcn32_0014 NC_009438.1 19735 21057 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 19735..21057 Shewanella putrefaciens CN-32 5081489 YP_001181550.1 CDS Sputcn32_0015 NC_009438.1 21085 21699 D PFAM: protein of unknown function UPF0029; KEGG: shm:Shewmr7_0018 protein of unknown function UPF0029; hypothetical protein 21085..21699 Shewanella putrefaciens CN-32 5081490 YP_001181551.1 CDS Sputcn32_0016 NC_009438.1 21777 23234 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: she:Shewmr4_0021 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 21777..23234 Shewanella putrefaciens CN-32 5081491 YP_001181552.1 CDS Sputcn32_0017 NC_009438.1 23237 23761 D KEGG: shm:Shewmr7_0020 protoporphyrinogen oxidase; protoporphyrinogen oxidase 23237..23761 Shewanella putrefaciens CN-32 5081492 YP_001181553.1 CDS Sputcn32_0018 NC_009438.1 23811 24119 R PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_0021 transcriptional regulator, ArsR family; regulatory protein ArsR complement(23811..24119) Shewanella putrefaciens CN-32 5081493 YP_001181554.1 CDS Sputcn32_0019 NC_009438.1 24322 24876 D KEGG: she:Shewmr4_0024 protoporphyrinogen oxidase; protoporphyrinogen oxidase 24322..24876 Shewanella putrefaciens CN-32 5081494 YP_001181555.1 CDS Sputcn32_0020 NC_009438.1 24916 26358 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: she:Shewmr4_0025 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(24916..26358) Shewanella putrefaciens CN-32 5081495 YP_001181556.1 CDS trkA NC_009438.1 26379 27788 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(26379..27788) Shewanella putrefaciens CN-32 5081496 YP_001181557.1 CDS Sputcn32_0022 NC_009438.1 27804 29093 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: she:Shewmr4_0027 sun protein; sun protein complement(27804..29093) Shewanella putrefaciens CN-32 5081497 YP_001181558.1 CDS Sputcn32_0023 NC_009438.1 29096 30052 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: shm:Shewmr7_0026 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(29096..30052) Shewanella putrefaciens CN-32 5081498 YP_001181559.1 CDS def NC_009438.1 30062 30574 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(30062..30574) Shewanella putrefaciens CN-32 5081499 YP_001181560.1 CDS Sputcn32_0025 NC_009438.1 30700 31824 D PFAM: Peptidoglycan-binding LysM; KEGG: shm:Shewmr7_0028 peptidoglycan-binding LysM; peptidoglycan-binding LysM 30700..31824 Shewanella putrefaciens CN-32 5081500 YP_001181561.1 CDS Sputcn32_0026 NC_009438.1 31903 32925 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: she:Shewmr4_0031 DNA protecting protein DprA; DNA protecting protein DprA 31903..32925 Shewanella putrefaciens CN-32 5081501 YP_001181562.1 CDS Sputcn32_0027 NC_009438.1 32928 33401 D PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 32928..33401 Shewanella putrefaciens CN-32 5081502 YP_001181563.1 CDS Sputcn32_0028 NC_009438.1 33515 34084 D PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: shm:Shewmr7_0031 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 33515..34084 Shewanella putrefaciens CN-32 5081503 YP_001181564.1 CDS Sputcn32_0029 NC_009438.1 34232 34798 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 34232..34798 Shewanella putrefaciens CN-32 5078752 YP_001181565.1 CDS Sputcn32_0030 NC_009438.1 34824 35732 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 34824..35732 Shewanella putrefaciens CN-32 5078753 YP_001181566.1 CDS Sputcn32_0031 NC_009438.1 35767 36204 R PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin complement(35767..36204) Shewanella putrefaciens CN-32 5078754 YP_001181567.1 CDS aroE NC_009438.1 36358 37206 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 36358..37206 Shewanella putrefaciens CN-32 5078755 YP_001181568.1 CDS Sputcn32_0033 NC_009438.1 37212 37487 D PFAM: protein of unknown function DUF1488; KEGG: shm:Shewmr7_0036 protein of unknown function DUF1488; hypothetical protein 37212..37487 Shewanella putrefaciens CN-32 5078756 YP_001181569.1 CDS Sputcn32_0034 NC_009438.1 37621 38169 R KEGG: shm:Shewmr7_0037 carbonic anhydrase, family 3; carbonic anhydrase complement(37621..38169) Shewanella putrefaciens CN-32 5078757 YP_001181570.1 CDS Sputcn32_0035 NC_009438.1 44241 44495 D PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein 44241..44495 Shewanella putrefaciens CN-32 5078762 YP_001181571.1 CDS Sputcn32_0036 NC_009438.1 44518 44973 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: she:Shewmr4_0041 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 44518..44973 Shewanella putrefaciens CN-32 5078763 YP_001181572.1 CDS Sputcn32_0037 NC_009438.1 44959 45702 R PFAM: protein of unknown function DUF610, YibQ; KEGG: shm:Shewmr7_0040 protein of unknown function DUF610, YibQ; hypothetical protein complement(44959..45702) Shewanella putrefaciens CN-32 5078764 YP_001181573.1 CDS Sputcn32_0038 NC_009438.1 45712 46920 R KEGG: she:Shewmr4_0043 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(45712..46920) Shewanella putrefaciens CN-32 5078765 YP_001181574.1 CDS Sputcn32_0039 NC_009438.1 46950 48083 R PFAM: peptidase M23B; KEGG: shm:Shewmr7_0042 peptidase M23B; peptidase M23B complement(46950..48083) Shewanella putrefaciens CN-32 5078766 YP_001181575.1 CDS Sputcn32_0040 NC_009438.1 48094 49638 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(48094..49638) Shewanella putrefaciens CN-32 5078767 YP_001181576.1 CDS Sputcn32_0041 NC_009438.1 49905 50339 D PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_0044 rhodanese domain protein; rhodanese domain-containing protein 49905..50339 Shewanella putrefaciens CN-32 5078768 YP_001181577.1 CDS Sputcn32_0042 NC_009438.1 50598 51083 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 50598..51083 Shewanella putrefaciens CN-32 5078769 YP_001181578.1 CDS gpsA NC_009438.1 51088 52104 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 51088..52104 Shewanella putrefaciens CN-32 5078770 YP_001181579.1 CDS Sputcn32_0044 NC_009438.1 52525 53709 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_0049 HI0933 family protein; hypothetical protein 52525..53709 Shewanella putrefaciens CN-32 5078771 YP_001181580.1 CDS Sputcn32_0045 NC_009438.1 53783 54247 R KEGG: sde:Sde_2764 hypothetical protein; hypothetical protein complement(53783..54247) Shewanella putrefaciens CN-32 5078772 YP_001181581.1 CDS Sputcn32_0046 NC_009438.1 54548 55912 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: shm:Shewmr7_0049 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(54548..55912) Shewanella putrefaciens CN-32 5078773 YP_001181582.1 CDS Sputcn32_0047 NC_009438.1 55914 56612 R PFAM: TrkA-N domain protein; KEGG: shm:Shewmr7_0050 TrkA-N domain protein; TrkA domain-containing protein complement(55914..56612) Shewanella putrefaciens CN-32 5078774 YP_001181583.1 CDS Sputcn32_0048 NC_009438.1 56655 57344 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE; two component transcriptional regulator complement(56655..57344) Shewanella putrefaciens CN-32 5078775 YP_001181584.1 CDS Sputcn32_0049 NC_009438.1 57345 58391 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_0052 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(57345..58391) Shewanella putrefaciens CN-32 5078776 YP_001181585.1 CDS Sputcn32_0050 NC_009438.1 58629 59552 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: shm:Shewmr7_0053 pirin domain protein domain protein; pirin domain-containing protein complement(58629..59552) Shewanella putrefaciens CN-32 5078777 YP_001181586.1 CDS Sputcn32_0051 NC_009438.1 59840 61030 D KEGG: eca:ECA0549 putative plasmid transfer protein; putative plasmid transfer protein 59840..61030 Shewanella putrefaciens CN-32 5078778 YP_001181587.1 CDS Sputcn32_0052 NC_009438.1 61217 61681 D PFAM: NLP/P60 protein; KEGG: shm:Shewmr7_0059 NLP/P60 protein; NLP/P60 protein 61217..61681 Shewanella putrefaciens CN-32 5078779 YP_001181588.1 CDS mogA NC_009438.1 61972 62505 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 61972..62505 Shewanella putrefaciens CN-32 5078780 YP_001181589.1 CDS Sputcn32_0054 NC_009438.1 62578 62826 R KEGG: son:SO0068 hypothetical protein; hypothetical protein complement(62578..62826) Shewanella putrefaciens CN-32 5078781 YP_001181590.1 CDS Sputcn32_0055 NC_009438.1 62906 64045 R KEGG: son:SO0069 transport protein, putative; transporter complement(62906..64045) Shewanella putrefaciens CN-32 5078782 YP_001181591.1 CDS Sputcn32_0056 NC_009438.1 64128 64862 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein complement(64128..64862) Shewanella putrefaciens CN-32 5078783 YP_001181592.1 CDS Sputcn32_0057 NC_009438.1 64866 66506 R PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: she:Shewmr4_0074 TAP domain protein; TAP domain-containing protein complement(64866..66506) Shewanella putrefaciens CN-32 5078784 YP_001181593.1 CDS Sputcn32_0058 NC_009438.1 66600 66971 D PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; regulatory protein GntR 66600..66971 Shewanella putrefaciens CN-32 5078785 YP_001181594.1 CDS Sputcn32_0059 NC_009438.1 67014 67877 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter-like protein 67014..67877 Shewanella putrefaciens CN-32 5078786 YP_001181595.1 CDS Sputcn32_0060 NC_009438.1 67874 69190 D KEGG: son:SO0074 hypothetical protein; hypothetical protein 67874..69190 Shewanella putrefaciens CN-32 5078787 YP_001181596.1 CDS Sputcn32_0061 NC_009438.1 69383 71179 D PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_0078 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 69383..71179 Shewanella putrefaciens CN-32 5078788 YP_001181597.1 CDS Sputcn32_0062 NC_009438.1 71323 73779 D KEGG: she:Shewmr4_0079 MORN variant repeat protein; MORN repeat-containing protein 71323..73779 Shewanella putrefaciens CN-32 5078789 YP_001181598.1 CDS Sputcn32_0063 NC_009438.1 73905 74315 D PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0078 thioesterase superfamily protein; thioesterase superfamily protein 73905..74315 Shewanella putrefaciens CN-32 5078790 YP_001181599.1 CDS Sputcn32_0064 NC_009438.1 74439 74987 D PFAM: HPP family protein+B94; KEGG: shm:Shewmr7_0079 HPP family protein; HPP family protein 74439..74987 Shewanella putrefaciens CN-32 5078791 YP_001181600.1 CDS Sputcn32_0065 NC_009438.1 74984 75250 R KEGG: she:Shewmr4_0083 hypothetical protein; hypothetical protein complement(74984..75250) Shewanella putrefaciens CN-32 5078792 YP_001181601.1 CDS Sputcn32_0066 NC_009438.1 75320 75760 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0081 thioesterase superfamily protein; thioesterase superfamily protein complement(75320..75760) Shewanella putrefaciens CN-32 5078793 YP_001181602.1 CDS Sputcn32_0067 NC_009438.1 75872 76267 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: shm:Shewmr7_0084 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 75872..76267 Shewanella putrefaciens CN-32 5078794 YP_001181603.1 CDS Sputcn32_0068 NC_009438.1 76603 77727 D KEGG: sdn:Sden_0075 hypothetical protein; hypothetical protein 76603..77727 Shewanella putrefaciens CN-32 5078843 YP_001181604.1 CDS Sputcn32_0069 NC_009438.1 77797 78477 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(77797..78477) Shewanella putrefaciens CN-32 5078844 YP_001181605.1 CDS Sputcn32_0070 NC_009438.1 78858 79286 D KEGG: son:SO0085 hypothetical protein; hypothetical protein 78858..79286 Shewanella putrefaciens CN-32 5078845 YP_001181606.1 CDS Sputcn32_0071 NC_009438.1 79288 81111 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: csa:Csal_2061 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(79288..81111) Shewanella putrefaciens CN-32 5078846 YP_001181607.1 CDS Sputcn32_0072 NC_009438.1 81271 81615 D hypothetical protein 81271..81615 Shewanella putrefaciens CN-32 5078847 YP_001181608.1 CDS Sputcn32_0073 NC_009438.1 81838 82374 D KEGG: son:SO0090 hypothetical protein; hypothetical protein 81838..82374 Shewanella putrefaciens CN-32 5078848 YP_001181609.1 CDS Sputcn32_0074 NC_009438.1 82489 82845 D KEGG: shm:Shewmr7_0143 hypothetical protein; hypothetical protein 82489..82845 Shewanella putrefaciens CN-32 5078849 YP_001181610.1 CDS Sputcn32_0075 NC_009438.1 83012 83443 D PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_0090 transcriptional regulator, MarR family; MarR family transcriptional regulator 83012..83443 Shewanella putrefaciens CN-32 5078850 YP_001181611.1 CDS Sputcn32_0076 NC_009438.1 83522 84277 D PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: shm:Shewmr7_0091 FAD-binding 9, siderophore-interacting domain protein; siderophore-interacting protein 83522..84277 Shewanella putrefaciens CN-32 5078851 YP_001181612.1 CDS Sputcn32_0077 NC_009438.1 84375 85601 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(84375..85601) Shewanella putrefaciens CN-32 5078852 YP_001181613.1 CDS Sputcn32_0078 NC_009438.1 85836 86543 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: she:Shewmr4_0098 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor 85836..86543 Shewanella putrefaciens CN-32 5078853 YP_001181614.1 CDS Sputcn32_0079 NC_009438.1 86685 88352 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 86685..88352 Shewanella putrefaciens CN-32 5078854 YP_001181615.1 CDS Sputcn32_0080 NC_009438.1 88405 89946 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 88405..89946 Shewanella putrefaciens CN-32 5078855 YP_001181616.1 CDS Sputcn32_0081 NC_009438.1 90072 91319 R TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: shm:Shewmr7_3942 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase complement(90072..91319) Shewanella putrefaciens CN-32 5078856 YP_001181617.1 CDS Sputcn32_0082 NC_009438.1 91337 92437 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(91337..92437) Shewanella putrefaciens CN-32 5078857 YP_001181618.1 CDS Sputcn32_0083 NC_009438.1 92446 93942 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_3940 sodium/proline symporter; sodium/proline symporter complement(92446..93942) Shewanella putrefaciens CN-32 5078858 YP_001181619.1 CDS Sputcn32_0084 NC_009438.1 94554 95909 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(94554..95909) Shewanella putrefaciens CN-32 5078859 YP_001181620.1 CDS Sputcn32_0085 NC_009438.1 96040 96594 R KEGG: son:SO4701 hypothetical protein; hypothetical protein complement(96040..96594) Shewanella putrefaciens CN-32 5078860 YP_001181621.1 CDS Sputcn32_0086 NC_009438.1 96810 97508 R KEGG: son:SO4700 hypothetical protein; hypothetical protein complement(96810..97508) Shewanella putrefaciens CN-32 5078861 YP_001181622.1 CDS Sputcn32_0087 NC_009438.1 97818 99857 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A 97818..99857 Shewanella putrefaciens CN-32 5078862 YP_001181623.1 CDS Sputcn32_0088 NC_009438.1 100033 100563 D KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein 100033..100563 Shewanella putrefaciens CN-32 5078863 YP_001181624.1 CDS Sputcn32_0089 NC_009438.1 100589 101236 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: she:Shewmr4_3840 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein complement(100589..101236) Shewanella putrefaciens CN-32 5078864 YP_001181625.1 CDS Sputcn32_0090 NC_009438.1 102007 103152 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_3837 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 102007..103152 Shewanella putrefaciens CN-32 5078865 YP_001181626.1 CDS Sputcn32_0091 NC_009438.1 103162 106296 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 103162..106296 Shewanella putrefaciens CN-32 5078866 YP_001181627.1 CDS Sputcn32_0092 NC_009438.1 106425 106712 D KEGG: she:Shewmr4_3835 hypothetical protein; hypothetical protein 106425..106712 Shewanella putrefaciens CN-32 5078867 YP_001181628.1 CDS Sputcn32_0093 NC_009438.1 106745 107065 D KEGG: shm:Shewmr7_3927 hypothetical protein; hypothetical protein 106745..107065 Shewanella putrefaciens CN-32 5078868 YP_001181629.1 CDS Sputcn32_0094 NC_009438.1 107146 108681 R PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: she:Shewmr4_3833 AbgT putative transporter; transporter AbgT complement(107146..108681) Shewanella putrefaciens CN-32 5078869 YP_001181630.1 CDS Sputcn32_0095 NC_009438.1 109245 109808 D PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein 109245..109808 Shewanella putrefaciens CN-32 5078870 YP_001181631.1 CDS Sputcn32_0096 NC_009438.1 109915 110664 D PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic 109915..110664 Shewanella putrefaciens CN-32 5078871 YP_001181632.1 CDS Sputcn32_0097 NC_009438.1 110661 110825 R KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein complement(110661..110825) Shewanella putrefaciens CN-32 5078872 YP_001181633.1 CDS Sputcn32_0098 NC_009438.1 110989 111834 R PFAM: protein of unknown function DUF519; KEGG: shm:Shewmr7_3922 protein of unknown function DUF519; hypothetical protein complement(110989..111834) Shewanella putrefaciens CN-32 5078873 YP_001181634.1 CDS Sputcn32_0099 NC_009438.1 111971 114235 R PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pat:Patl_2246 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(111971..114235) Shewanella putrefaciens CN-32 5078874 YP_001181635.1 CDS Sputcn32_0100 NC_009438.1 114456 115235 D PFAM: protein of unknown function DUF548; KEGG: shm:Shewmr7_3921 protein of unknown function DUF548; hypothetical protein 114456..115235 Shewanella putrefaciens CN-32 5078875 YP_001181636.1 CDS Sputcn32_0101 NC_009438.1 115816 116181 D hypothetical protein 115816..116181 Shewanella putrefaciens CN-32 5078876 YP_001181637.1 CDS Sputcn32_0102 NC_009438.1 116375 116800 D KEGG: pol:Bpro_1650 hypothetical protein; hypothetical protein 116375..116800 Shewanella putrefaciens CN-32 5078877 YP_001181638.1 CDS Sputcn32_0103 NC_009438.1 116931 117221 D hypothetical protein 116931..117221 Shewanella putrefaciens CN-32 5078878 YP_001181639.1 CDS Sputcn32_0104 NC_009438.1 117266 120436 R PFAM: acriflavin resistance protein; KEGG: csa:Csal_2405 acriflavin resistance protein; acriflavin resistance protein complement(117266..120436) Shewanella putrefaciens CN-32 5078879 YP_001181640.1 CDS Sputcn32_0105 NC_009438.1 120441 121487 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: hne:HNE_2191 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(120441..121487) Shewanella putrefaciens CN-32 5078880 YP_001181641.1 CDS Sputcn32_0106 NC_009438.1 121532 123718 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rru:Rru_A1440 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(121532..123718) Shewanella putrefaciens CN-32 5078881 YP_001181642.1 CDS Sputcn32_0107 NC_009438.1 124135 125457 R PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease; peptidase M48, Ste24p complement(124135..125457) Shewanella putrefaciens CN-32 5078882 YP_001181643.1 CDS Sputcn32_0108 NC_009438.1 125794 126432 D KEGG: shm:Shewmr7_0108 hypothetical protein; hypothetical protein 125794..126432 Shewanella putrefaciens CN-32 5078883 YP_001181644.1 CDS Sputcn32_0109 NC_009438.1 126451 126882 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRA1918 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 126451..126882 Shewanella putrefaciens CN-32 5078884 YP_001181645.1 CDS Sputcn32_0110 NC_009438.1 126879 127505 R KEGG: shm:Shewmr7_0110 hypothetical protein; hypothetical protein complement(126879..127505) Shewanella putrefaciens CN-32 5078885 YP_001181646.1 CDS Sputcn32_0111 NC_009438.1 127621 128583 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: yps:YPTB1207 putative transcriptional regulator, LysR family; LysR family transcriptional regulator complement(127621..128583) Shewanella putrefaciens CN-32 5078886 YP_001181647.1 CDS fabG NC_009438.1 128733 129482 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 128733..129482 Shewanella putrefaciens CN-32 5078887 YP_001181648.1 CDS Sputcn32_0113 NC_009438.1 129778 130188 D hypothetical protein 129778..130188 Shewanella putrefaciens CN-32 5078888 YP_001181649.1 CDS Sputcn32_0114 NC_009438.1 130468 132579 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: vpa:VP2006 putative suppressor for copper-sensitivity B precursor; cytochrome c biogenesis protein, transmembrane region 130468..132579 Shewanella putrefaciens CN-32 5078889 YP_001181650.1 CDS Sputcn32_0115 NC_009438.1 132749 133573 D PFAM: DSBA oxidoreductase; KEGG: vfi:VF2492 copper sensitivity protein ScsC; DSBA oxidoreductase 132749..133573 Shewanella putrefaciens CN-32 5078890 YP_001181651.1 CDS Sputcn32_0116 NC_009438.1 133599 134123 D PFAM: Redoxin domain protein; KEGG: ppr:PBPRB1492 hypothetical thioredoxin; redoxin domain-containing protein 133599..134123 Shewanella putrefaciens CN-32 5078891 YP_001181652.1 CDS Sputcn32_0117 NC_009438.1 134168 134560 D PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein; hypothetical protein 134168..134560 Shewanella putrefaciens CN-32 5078892 YP_001181653.1 CDS Sputcn32_0118 NC_009438.1 134709 135977 D PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_0112 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 134709..135977 Shewanella putrefaciens CN-32 5078944 YP_001181654.1 CDS Sputcn32_0119 NC_009438.1 135974 136597 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_0113 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(135974..136597) Shewanella putrefaciens CN-32 5078945 YP_001181655.1 CDS Sputcn32_0120 NC_009438.1 136618 137181 R PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_0114 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(136618..137181) Shewanella putrefaciens CN-32 5078946 YP_001181656.1 CDS Sputcn32_0121 NC_009438.1 137302 137754 D KEGG: shm:Shewmr7_0115 hypothetical protein; hypothetical protein 137302..137754 Shewanella putrefaciens CN-32 5078947 YP_001181657.1 CDS Sputcn32_0122 NC_009438.1 137763 138545 R PFAM: protein of unknown function DUF833; KEGG: shm:Shewmr7_0116 protein of unknown function DUF833; hypothetical protein complement(137763..138545) Shewanella putrefaciens CN-32 5078948 YP_001181658.1 CDS Sputcn32_0123 NC_009438.1 138608 140221 R KEGG: shm:Shewmr7_0117 hypothetical protein; hypothetical protein complement(138608..140221) Shewanella putrefaciens CN-32 5078949 YP_001181659.1 CDS Sputcn32_0124 NC_009438.1 140628 141221 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 140628..141221 Shewanella putrefaciens CN-32 5078950 YP_001181660.1 CDS Sputcn32_0125 NC_009438.1 141509 144118 D PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: shm:Shewmr7_0119 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A 141509..144118 Shewanella putrefaciens CN-32 5078951 YP_001181661.1 CDS Sputcn32_0126 NC_009438.1 144195 144755 R PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase complement(144195..144755) Shewanella putrefaciens CN-32 5078952 YP_001181662.1 CDS Sputcn32_0127 NC_009438.1 144870 145292 D PFAM: flagellar basal body-associated protein FliL; KEGG: she:Shewmr4_0127 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 144870..145292 Shewanella putrefaciens CN-32 5078953 YP_001181663.1 CDS Sputcn32_0128 NC_009438.1 145349 146422 D PFAM: protein of unknown function DUF890; KEGG: shm:Shewmr7_0122 protein of unknown function DUF890; putative SAM-dependent methyltransferase 145349..146422 Shewanella putrefaciens CN-32 5078954 YP_001181664.1 CDS Sputcn32_0129 NC_009438.1 146543 147205 R KEGG: she:Shewmr4_0130 hypothetical protein; hypothetical protein complement(146543..147205) Shewanella putrefaciens CN-32 5078955 YP_001181665.1 CDS Sputcn32_0130 NC_009438.1 147273 148031 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(147273..148031) Shewanella putrefaciens CN-32 5078956 YP_001181666.1 CDS Sputcn32_0131 NC_009438.1 148044 149297 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: shm:Shewmr7_0126 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein complement(148044..149297) Shewanella putrefaciens CN-32 5078957 YP_001181667.1 CDS Sputcn32_0132 NC_009438.1 149639 150175 D PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin; Ferritin, Dps family protein 149639..150175 Shewanella putrefaciens CN-32 5078958 YP_001181668.1 CDS Sputcn32_0133 NC_009438.1 150238 153471 R KEGG: shm:Shewmr7_0128 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(150238..153471) Shewanella putrefaciens CN-32 5078959 YP_001181669.1 CDS ribB NC_009438.1 154012 154665 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(154012..154665) Shewanella putrefaciens CN-32 5078960 YP_001181670.1 CDS Sputcn32_0135 NC_009438.1 155253 157388 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: she:Shewmr4_0136 oligopeptidase B; oligopeptidase B 155253..157388 Shewanella putrefaciens CN-32 5078961 YP_001181671.1 CDS Sputcn32_0136 NC_009438.1 157399 157842 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: shm:Shewmr7_0131 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 157399..157842 Shewanella putrefaciens CN-32 5078962 YP_001181672.1 CDS Sputcn32_0137 NC_009438.1 158259 159137 D KEGG: she:Shewmr4_2140 hypothetical protein; hypothetical protein 158259..159137 Shewanella putrefaciens CN-32 5078963 YP_001181673.1 CDS Sputcn32_0138 NC_009438.1 159624 160316 R hypothetical protein complement(159624..160316) Shewanella putrefaciens CN-32 5078964 YP_001181674.1 CDS Sputcn32_0139 NC_009438.1 160379 160621 R KEGG: shm:Shewmr7_0137 hypothetical protein; hypothetical protein complement(160379..160621) Shewanella putrefaciens CN-32 5078965 YP_001181675.1 CDS Sputcn32_0140 NC_009438.1 160649 160849 R KEGG: shm:Shewmr7_0137 hypothetical protein; hypothetical protein complement(160649..160849) Shewanella putrefaciens CN-32 5078966 YP_001181676.1 CDS Sputcn32_0141 NC_009438.1 161124 161897 R KEGG: shm:Shewmr7_0138 lipoprotein, putative; putative lipoprotein complement(161124..161897) Shewanella putrefaciens CN-32 5078967 YP_001181677.1 CDS Sputcn32_0142 NC_009438.1 162172 162939 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0139 methyltransferase type 11; type 12 methyltransferase 162172..162939 Shewanella putrefaciens CN-32 5078968 YP_001181678.1 CDS Sputcn32_0143 NC_009438.1 162965 164956 R PFAM: peptidase M14, carboxypeptidase A; KEGG: she:Shewmr4_0145 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A complement(162965..164956) Shewanella putrefaciens CN-32 5078969 YP_001181679.1 CDS Sputcn32_0144 NC_009438.1 165116 166231 R KEGG: shm:Shewmr7_0141 hypothetical protein; hypothetical protein complement(165116..166231) Shewanella putrefaciens CN-32 5078970 YP_001181680.1 CDS Sputcn32_0145 NC_009438.1 166470 167720 R PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(166470..167720) Shewanella putrefaciens CN-32 5078971 YP_001181681.1 CDS Sputcn32_0146 NC_009438.1 168175 168672 R hypothetical protein complement(168175..168672) Shewanella putrefaciens CN-32 5078972 YP_001181682.1 CDS Sputcn32_0147 NC_009438.1 168674 170233 R PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative; transporter AbgT complement(168674..170233) Shewanella putrefaciens CN-32 5078973 YP_001181683.1 CDS Sputcn32_0148 NC_009438.1 170535 172130 D KEGG: gme:Gmet_1465 hypothetical protein; hypothetical protein 170535..172130 Shewanella putrefaciens CN-32 5078974 YP_001181684.1 CDS Sputcn32_0149 NC_009438.1 172225 175374 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(172225..175374) Shewanella putrefaciens CN-32 5078975 YP_001181685.1 CDS Sputcn32_0150 NC_009438.1 175384 176913 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SOA0154 heavy metal efflux protein, putative; RND family efflux transporter MFP subunit complement(175384..176913) Shewanella putrefaciens CN-32 5078976 YP_001181686.1 CDS Sputcn32_0151 NC_009438.1 176935 177195 R KEGG: she:Shewmr4_3781 copper-transporting ATPase domain protein; copper-transporting ATPase domain-containing protein complement(176935..177195) Shewanella putrefaciens CN-32 5078977 YP_001181687.1 CDS Sputcn32_0152 NC_009438.1 177414 177911 R KEGG: son:SOA0156 hypothetical protein; hypothetical protein complement(177414..177911) Shewanella putrefaciens CN-32 5078978 YP_001181688.1 CDS Sputcn32_0153 NC_009438.1 177983 178408 R KEGG: cps:CPS_2062 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase complement(177983..178408) Shewanella putrefaciens CN-32 5078979 YP_001181689.1 CDS Sputcn32_0154 NC_009438.1 178519 179223 D KEGG: neu:NE0385 site-specific DNA-methyltransferase, type I modification; site-specific DNA-methyltransferase, type I modification 178519..179223 Shewanella putrefaciens CN-32 5078980 YP_001181690.1 CDS Sputcn32_0155 NC_009438.1 179220 180854 R SMART: AAA ATPase; KEGG: bps:BPSL3342 putative bacteriophage protein; ATPase AAA complement(179220..180854) Shewanella putrefaciens CN-32 5078981 YP_001181691.1 CDS Sputcn32_0156 NC_009438.1 180847 181659 R PFAM: protein of unknown function DUF45; KEGG: yps:YPTB3878 putative predicted metal-dependent hydrolase; hypothetical protein complement(180847..181659) Shewanella putrefaciens CN-32 5078982 YP_001181692.1 CDS Sputcn32_0157 NC_009438.1 181665 184955 R KEGG: yps:YPTB3879 possible type I restriction enzyme (restriction subunit); TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease complement(181665..184955) Shewanella putrefaciens CN-32 5078983 YP_001181693.1 CDS Sputcn32_0158 NC_009438.1 184966 186303 R PFAM: KAP P-loop domain protein; KEGG: vpa:VP2903 hypothetical protein; KAP P-loop domain-containing protein complement(184966..186303) Shewanella putrefaciens CN-32 5078984 YP_001181694.1 CDS Sputcn32_0159 NC_009438.1 186313 187701 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(186313..187701) Shewanella putrefaciens CN-32 5078985 YP_001181695.1 CDS Sputcn32_0160 NC_009438.1 187701 188900 R PFAM: restriction modification system DNA specificity domain; KEGG: tde:TDE0368 type I restriction-modification system, S subunit, putative; restriction modification system DNA specificity subunit complement(187701..188900) Shewanella putrefaciens CN-32 5078986 YP_001181696.1 CDS Sputcn32_0161 NC_009438.1 188890 190410 R TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: dvu:DVU1709 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit complement(188890..190410) Shewanella putrefaciens CN-32 5079038 YP_001181697.1 CDS Sputcn32_0162 NC_009438.1 190451 191065 R KEGG: xcb:XC_1208 hypothetical protein; hypothetical protein complement(190451..191065) Shewanella putrefaciens CN-32 5079039 YP_001181698.1 CDS Sputcn32_0163 NC_009438.1 191300 191968 D hypothetical protein 191300..191968 Shewanella putrefaciens CN-32 5079040 YP_001181699.1 CDS Sputcn32_0164 NC_009438.1 192103 192444 R KEGG: ana:alr8025 unknown protein; hypothetical protein complement(192103..192444) Shewanella putrefaciens CN-32 5079041 YP_001181700.1 CDS Sputcn32_0165 NC_009438.1 192454 193425 R SMART: AAA ATPase; KEGG: psp:PSPPH_B0059 ExeA-like protein; ATPase AAA complement(192454..193425) Shewanella putrefaciens CN-32 5079042 YP_001181701.1 CDS Sputcn32_0166 NC_009438.1 193415 195076 R KEGG: stm:PSLT044 putative integrase protein; putative integrase protein complement(193415..195076) Shewanella putrefaciens CN-32 5079043 YP_001181702.1 CDS Sputcn32_0167 NC_009438.1 195081 195671 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: xac:XACb0071 Tn5045 resolvase; resolvase domain-containing protein complement(195081..195671) Shewanella putrefaciens CN-32 5079044 YP_001181703.1 CDS Sputcn32_0168 NC_009438.1 195909 197561 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: sfr:Sfri_3488 mercuric reductase; putative mercuric reductase complement(195909..197561) Shewanella putrefaciens CN-32 5079045 YP_001181704.1 CDS Sputcn32_0169 NC_009438.1 197674 197949 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sfr:Sfri_3490 mercuric transport protein periplasmic component; mercuric transport periplasmic protein complement(197674..197949) Shewanella putrefaciens CN-32 5079046 YP_001181705.1 CDS Sputcn32_0170 NC_009438.1 198002 198349 R PFAM: Mercuric transport protein MerT; KEGG: sfr:Sfri_3491 mercuric transport protein MerT; mercuric transporter MerT complement(198002..198349) Shewanella putrefaciens CN-32 5079047 YP_001181706.1 CDS Sputcn32_0171 NC_009438.1 198429 198833 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_3492 transcriptional regulator, MerR family protein; MerR family transcriptional regulator complement(198429..198833) Shewanella putrefaciens CN-32 5079048 YP_001181707.1 CDS Sputcn32_0172 NC_009438.1 199130 199786 R PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-repair protein complement(199130..199786) Shewanella putrefaciens CN-32 5079049 YP_001181708.1 CDS Sputcn32_0173 NC_009438.1 199833 200648 R PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit complement(199833..200648) Shewanella putrefaciens CN-32 5079050 YP_001181709.1 CDS Sputcn32_0174 NC_009438.1 200699 200983 R PFAM: transposase IS3/IS911 family protein; KEGG: vpa:VP1788 putative transposase; transposase IS3/IS911 family protein complement(200699..200983) Shewanella putrefaciens CN-32 5079051 YP_001181710.1 CDS Sputcn32_0175 NC_009438.1 201013 201438 R PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor complement(201013..201438) Shewanella putrefaciens CN-32 5079052 YP_001181711.1 CDS Sputcn32_0176 NC_009438.1 201597 201944 R KEGG: psp:PSPPH_A0095 plasmid stabilization system protein, RelE/ParE family; hypothetical protein complement(201597..201944) Shewanella putrefaciens CN-32 5079053 YP_001181712.1 CDS Sputcn32_0177 NC_009438.1 201946 202203 R TIGRFAM: prevent-host-death family protein; KEGG: vpa:VP1886 hypothetical protein; prevent-host-death family protein complement(201946..202203) Shewanella putrefaciens CN-32 5079054 YP_001181713.1 CDS Sputcn32_0178 NC_009438.1 202826 203458 R PFAM: phage integrase family protein; KEGG: jan:Jann_1536 phage integrase; phage integrase family protein complement(202826..203458) Shewanella putrefaciens CN-32 5079055 YP_001181714.1 CDS Sputcn32_0179 NC_009438.1 203703 204530 R KEGG: gme:Gmet_2490 hypothetical protein; hypothetical protein complement(203703..204530) Shewanella putrefaciens CN-32 5079056 YP_001181715.1 CDS Sputcn32_0180 NC_009438.1 204634 205059 R hypothetical protein complement(204634..205059) Shewanella putrefaciens CN-32 5079057 YP_001181716.1 CDS Sputcn32_0181 NC_009438.1 205738 206073 D KEGG: son:SOA0069 hypothetical protein; hypothetical protein 205738..206073 Shewanella putrefaciens CN-32 5079058 YP_001181717.1 CDS Sputcn32_0182 NC_009438.1 206070 206357 D KEGG: son:SOA0068 putative transcriptional regulator; putative transcriptional regulator 206070..206357 Shewanella putrefaciens CN-32 5079059 YP_001181718.1 CDS Sputcn32_0183 NC_009438.1 206732 207031 R hypothetical protein complement(206732..207031) Shewanella putrefaciens CN-32 5079060 YP_001181719.1 CDS Sputcn32_0184 NC_009438.1 207047 207349 R hypothetical protein complement(207047..207349) Shewanella putrefaciens CN-32 5079061 YP_001181720.1 CDS Sputcn32_0185 NC_009438.1 207856 208014 D KEGG: eca:ECA2757 hypothetical protein; hypothetical protein 207856..208014 Shewanella putrefaciens CN-32 5079062 YP_001181721.1 CDS Sputcn32_0186 NC_009438.1 208506 209996 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter 208506..209996 Shewanella putrefaciens CN-32 5079063 YP_001181722.1 CDS Sputcn32_0187 NC_009438.1 210031 210885 D PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein 210031..210885 Shewanella putrefaciens CN-32 5079064 YP_001181723.1 CDS Sputcn32_0188 NC_009438.1 210976 211308 D KEGG: sil:SPO2248 DnaK suppressor protein, putative; TraR/DksA family transcriptional regulator 210976..211308 Shewanella putrefaciens CN-32 5079065 YP_001181724.1 CDS Sputcn32_0189 NC_009438.1 211426 212046 R PFAM: Resolvase, N-terminal domain; KEGG: sfr:Sfri_3477 resolvase, N-terminal domain protein; resolvase domain-containing protein complement(211426..212046) Shewanella putrefaciens CN-32 5079066 YP_001181725.1 CDS Sputcn32_0190 NC_009438.1 212216 212476 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sfr:Sfri_3472 prevent-host-death family protein; prevent-host-death family protein 212216..212476 Shewanella putrefaciens CN-32 5079067 YP_001181726.1 CDS Sputcn32_0191 NC_009438.1 212476 212787 D PFAM: plasmid stabilization system; KEGG: sfr:Sfri_3471 plasmid stabilization system; plasmid stabilization system protein 212476..212787 Shewanella putrefaciens CN-32 5079068 YP_001181727.1 CDS Sputcn32_0192 NC_009438.1 212811 215891 D PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3470 transposase Tn3 family protein; transposase Tn3 family protein 212811..215891 Shewanella putrefaciens CN-32 5079069 YP_001181728.1 CDS Sputcn32_0193 NC_009438.1 215929 216621 D KEGG: pol:Bpro_2488 cointegrate resolution protein T; cointegrate resolution protein T 215929..216621 Shewanella putrefaciens CN-32 5079070 YP_001181729.1 CDS Sputcn32_0194 NC_009438.1 216839 217246 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(216839..217246) Shewanella putrefaciens CN-32 5079071 YP_001181730.1 CDS Sputcn32_0195 NC_009438.1 217342 218238 D KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 217342..218238 Shewanella putrefaciens CN-32 5079072 YP_001181731.1 CDS Sputcn32_0196 NC_009438.1 218242 218754 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 218242..218754 Shewanella putrefaciens CN-32 5079073 YP_001181732.1 CDS Sputcn32_0197 NC_009438.1 218776 220065 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 218776..220065 Shewanella putrefaciens CN-32 5079074 YP_001181733.1 CDS Sputcn32_0198 NC_009438.1 220338 221450 R PFAM: iron-containing alcohol dehydrogenase; KEGG: sec:SC2060 propanediol utilization: propanol dehydrogenase; iron-containing alcohol dehydrogenase complement(220338..221450) Shewanella putrefaciens CN-32 5079075 YP_001181734.1 CDS Sputcn32_0199 NC_009438.1 221466 222860 R PFAM: aldehyde dehydrogenase; KEGG: stm:STM2051 CoA-dependent propionaldehyde dehydrogenase; aldehyde dehydrogenase complement(221466..222860) Shewanella putrefaciens CN-32 5079076 YP_001181735.1 CDS Sputcn32_0200 NC_009438.1 222857 223366 R KEGG: ccr:CC2181 GlcG protein, putative; hypothetical protein complement(222857..223366) Shewanella putrefaciens CN-32 5079077 YP_001181736.1 CDS Sputcn32_0201 NC_009438.1 223399 223677 R PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ssn:SSO_2069 putative propanediol utilization protein: polyhedral bodies; ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(223399..223677) Shewanella putrefaciens CN-32 5079078 YP_001181737.1 CDS Sputcn32_0202 NC_009438.1 223682 224161 R KEGG: sec:SC2056 propanediol utilization; propanediol utilization complement(223682..224161) Shewanella putrefaciens CN-32 5079079 YP_001181738.1 CDS Sputcn32_0203 NC_009438.1 224175 224810 R PFAM: Propanediol utilization protein; KEGG: sec:SC2055 propanediol utilization; propanediol utilization protein complement(224175..224810) Shewanella putrefaciens CN-32 5079080 YP_001181739.1 CDS Sputcn32_0204 NC_009438.1 224815 225681 R PFAM: microcompartments protein; KEGG: stt:t0828 putative propanediol utilization protein PduK; microcompartments protein complement(224815..225681) Shewanella putrefaciens CN-32 5079081 YP_001181740.1 CDS Sputcn32_0205 NC_009438.1 225709 225999 R PFAM: microcompartments protein; KEGG: ssn:SSO_2065 putative propanediol utilization protein: polyhedral bodies; microcompartments protein complement(225709..225999) Shewanella putrefaciens CN-32 5079082 YP_001181741.1 CDS Sputcn32_0206 NC_009438.1 226071 226898 R TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: stm:STM2037 Propanediol utilization: propanediol diffusion facilitator; MIP family channel protein complement(226071..226898) Shewanella putrefaciens CN-32 5079083 YP_001181742.1 CDS Sputcn32_0207 NC_009438.1 226933 227853 R TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: ecc:c4538 putative pyruvate formate-lyase 3 activating enzyme; glycyl-radical activating family protein complement(226933..227853) Shewanella putrefaciens CN-32 5079084 YP_001181743.1 CDS Sputcn32_0208 NC_009438.1 227992 230535 R KEGG: ctc:CTC00936 formate acetyltransferase 2; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; pyruvate formate-lyase complement(227992..230535) Shewanella putrefaciens CN-32 5079085 YP_001181744.1 CDS Sputcn32_0209 NC_009438.1 230560 231375 R PFAM: microcompartments protein; KEGG: sec:SC2047 propanediol utilization: polyhedral bodies; microcompartments protein complement(230560..231375) Shewanella putrefaciens CN-32 5079086 YP_001181745.1 CDS Sputcn32_0210 NC_009438.1 231372 231674 R PFAM: microcompartments protein; KEGG: ssn:SSO_2058 putative propanediol utilization protein: polyhedral bodies; microcompartments protein complement(231372..231674) Shewanella putrefaciens CN-32 5079087 YP_001181746.1 CDS Sputcn32_0211 NC_009438.1 232687 233547 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: bsu:BG10319 PTS fructose-specific enzyme IID component; PTS system mannose/fructose/sorbose family transporter subunit IID complement(232687..233547) Shewanella putrefaciens CN-32 5079137 YP_001181747.1 CDS Sputcn32_0212 NC_009438.1 233558 234355 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS, sorbose-specific IIC subunit; KEGG: bld:BLi02829 PTS fructose-specific enzyme IIC component; RBL00186; PTS system mannose/fructose/sorbose family transporter subunit IIC complement(233558..234355) Shewanella putrefaciens CN-32 5079138 YP_001181748.1 CDS Sputcn32_0213 NC_009438.1 234371 234685 R PFAM: PTS system sorbose subfamily IIB component; KEGG: bsu:BG10317 PTS fructose-specific enzyme IIB component; PTS system sorbose subfamily transporter subunit IIB complement(234371..234685) Shewanella putrefaciens CN-32 5079139 YP_001181749.1 CDS Sputcn32_0214 NC_009438.1 234751 235674 R PFAM: transposase, IS4 family protein; KEGG: sgl:SG1040 transposase; transposase, IS4 family protein complement(234751..235674) Shewanella putrefaciens CN-32 5079140 YP_001181750.1 CDS Sputcn32_0215 NC_009438.1 235737 236078 R PFAM: IS1 transposase; KEGG: sec:SC1834 IS1 transposase; IS1 transposase complement(235737..236078) Shewanella putrefaciens CN-32 5079141 YP_001181751.1 CDS Sputcn32_0216 NC_009438.1 235997 236272 R PFAM: Insertion element protein; KEGG: sec:SC062 transposition protein; insertion element protein complement(235997..236272) Shewanella putrefaciens CN-32 5079142 YP_001181752.1 CDS Sputcn32_0217 NC_009438.1 236424 237026 D PFAM: phage integrase family protein; KEGG: ecc:c0291 hypothetical protein; phage integrase family protein 236424..237026 Shewanella putrefaciens CN-32 5079143 YP_001181753.1 CDS Sputcn32_0218 NC_009438.1 237269 238300 D KEGG: sbo:SBO_P069 IS630 ORF; IS630 orf 237269..238300 Shewanella putrefaciens CN-32 5079144 YP_001181754.1 CDS Sputcn32_0219 NC_009438.1 238827 239708 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: stm:STM2036 Propanediol utilization: transcriptional regulation, AraC family; helix-turn-helix domain-containing protein complement(238827..239708) Shewanella putrefaciens CN-32 5079145 YP_001181755.1 CDS Sputcn32_0220 NC_009438.1 239957 240364 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(239957..240364) Shewanella putrefaciens CN-32 5079146 YP_001181756.1 CDS Sputcn32_0221 NC_009438.1 240460 241356 D KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 240460..241356 Shewanella putrefaciens CN-32 5079147 YP_001181757.1 CDS Sputcn32_0222 NC_009438.1 241360 241872 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 241360..241872 Shewanella putrefaciens CN-32 5079148 YP_001181758.1 CDS Sputcn32_0223 NC_009438.1 241894 243183 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: bxe:Bxe_C0885 transposase, TnpA; transposase, IS204/IS1001/IS1096/IS1165 family protein 241894..243183 Shewanella putrefaciens CN-32 5079149 YP_001181759.1 CDS Sputcn32_0224 NC_009438.1 243253 243663 D KEGG: sdn:Sden_0608 hypothetical protein; hypothetical protein 243253..243663 Shewanella putrefaciens CN-32 5079150 YP_001181760.1 CDS Sputcn32_0225 NC_009438.1 243729 246851 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sde:Sde_1955 cation efflux system protein; CzcA family heavy metal efflux protein complement(243729..246851) Shewanella putrefaciens CN-32 5079151 YP_001181761.1 CDS Sputcn32_0226 NC_009438.1 246861 247907 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_1956 hypothetical protein; biotin/lipoyl attachment domain-containing protein complement(246861..247907) Shewanella putrefaciens CN-32 5079152 YP_001181762.1 CDS Sputcn32_0227 NC_009438.1 247986 249230 R PFAM: outer membrane efflux protein; KEGG: sde:Sde_1958 aconitate hydratase 1; outer membrane efflux protein complement(247986..249230) Shewanella putrefaciens CN-32 5079153 YP_001181763.1 CDS Sputcn32_0228 NC_009438.1 249282 249647 R hypothetical protein complement(249282..249647) Shewanella putrefaciens CN-32 5079154 YP_001181764.1 CDS Sputcn32_0229 NC_009438.1 249734 250639 R KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease complement(249734..250639) Shewanella putrefaciens CN-32 5079155 YP_001181765.1 CDS Sputcn32_0230 NC_009438.1 250662 251126 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 250662..251126 Shewanella putrefaciens CN-32 5079156 YP_001181766.1 CDS Sputcn32_0231 NC_009438.1 251158 252066 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tcx:Tcr_1429 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 251158..252066 Shewanella putrefaciens CN-32 5079157 YP_001181767.1 CDS Sputcn32_0232 NC_009438.1 252041 252394 D PFAM: protein of unknown function UPF0060; KEGG: abo:ABO_1373 hypothetical protein; hypothetical protein 252041..252394 Shewanella putrefaciens CN-32 5079158 YP_001181768.1 CDS Sputcn32_0233 NC_009438.1 252538 252927 D hypothetical protein 252538..252927 Shewanella putrefaciens CN-32 5079159 YP_001181769.1 CDS Sputcn32_0234 NC_009438.1 252957 253367 D hypothetical protein 252957..253367 Shewanella putrefaciens CN-32 5079160 YP_001181770.1 CDS Sputcn32_0235 NC_009438.1 253541 254446 R KEGG: ppr:PBPRA1708 hypothetical protein; hypothetical protein complement(253541..254446) Shewanella putrefaciens CN-32 5079161 YP_001181771.1 CDS Sputcn32_0236 NC_009438.1 254455 254817 R hypothetical protein complement(254455..254817) Shewanella putrefaciens CN-32 5079162 YP_001181772.1 CDS Sputcn32_0237 NC_009438.1 254905 255900 R PFAM: phage integrase family protein; KEGG: ppr:PBPRB0929 hypothetical protein; phage integrase family protein complement(254905..255900) Shewanella putrefaciens CN-32 5079163 YP_001181773.1 CDS Sputcn32_0238 NC_009438.1 255998 256582 R KEGG: shm:Shewmr7_2032 hypothetical protein; hypothetical protein complement(255998..256582) Shewanella putrefaciens CN-32 5079164 YP_001181774.1 CDS Sputcn32_0239 NC_009438.1 256659 257336 R hypothetical protein complement(256659..257336) Shewanella putrefaciens CN-32 5079165 YP_001181775.1 CDS Sputcn32_0240 NC_009438.1 257841 258257 R hypothetical protein complement(257841..258257) Shewanella putrefaciens CN-32 5079166 YP_001181776.1 CDS Sputcn32_0241 NC_009438.1 258257 258649 R hypothetical protein complement(258257..258649) Shewanella putrefaciens CN-32 5079167 YP_001181777.1 CDS Sputcn32_0242 NC_009438.1 258732 260468 R hypothetical protein complement(258732..260468) Shewanella putrefaciens CN-32 5079168 YP_001181778.1 CDS Sputcn32_0243 NC_009438.1 261081 261644 R KEGG: son:SO2875 ISSod10, transposase OrfB; ISSod10, transposase OrfB complement(261081..261644) Shewanella putrefaciens CN-32 5079169 YP_001181779.1 CDS Sputcn32_0244 NC_009438.1 261628 262107 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(261628..262107) Shewanella putrefaciens CN-32 5079170 YP_001181780.1 CDS Sputcn32_0246 NC_009438.1 262745 263848 R PFAM: transposase, IS4 family protein; KEGG: plu:plu3796 hypothetical protein; transposase, IS4 family protein complement(262745..263848) Shewanella putrefaciens CN-32 5079172 YP_001181781.1 CDS Sputcn32_0247 NC_009438.1 264071 264493 D KEGG: sfr:Sfri_1967 hypothetical protein; hypothetical protein 264071..264493 Shewanella putrefaciens CN-32 5079173 YP_001181782.1 CDS Sputcn32_0248 NC_009438.1 264630 265145 D PFAM: protein of unknown function DUF411; KEGG: sfr:Sfri_1968 protein of unknown function DUF411; hypothetical protein 264630..265145 Shewanella putrefaciens CN-32 5079174 YP_001181783.1 CDS Sputcn32_0249 NC_009438.1 265142 267160 D TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: sfr:Sfri_1969 copper-resistance protein, CopA family protein; CopA family copper resistance protein 265142..267160 Shewanella putrefaciens CN-32 5079175 YP_001181784.1 CDS Sputcn32_0250 NC_009438.1 267172 267885 D PFAM: copper resistance B precursor; KEGG: sfr:Sfri_1970 copper resistance B precursor; copper resistance B 267172..267885 Shewanella putrefaciens CN-32 5079176 YP_001181785.1 CDS Sputcn32_0251 NC_009438.1 268001 268423 D PFAM: copper resistance protein CopC; KEGG: sfr:Sfri_1971 copper resistance protein CopC; copper resistance protein CopC 268001..268423 Shewanella putrefaciens CN-32 5081078 YP_001181786.1 CDS Sputcn32_0252 NC_009438.1 268438 269334 D PFAM: copper resistance D domain protein; KEGG: sfr:Sfri_1972 copper resistance D domain protein; copper resistance D domain-containing protein 268438..269334 Shewanella putrefaciens CN-32 5081079 YP_001181787.1 CDS Sputcn32_0253 NC_009438.1 269410 269853 D KEGG: sfr:Sfri_1973 putative orphan protein; hypothetical protein 269410..269853 Shewanella putrefaciens CN-32 5081080 YP_001181788.1 CDS Sputcn32_0254 NC_009438.1 270036 270587 R KEGG: oih:OB3301 hypothetical protein; hypothetical protein complement(270036..270587) Shewanella putrefaciens CN-32 5081081 YP_001181789.1 CDS Sputcn32_0255 NC_009438.1 271015 272235 D PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein; outer membrane porin 271015..272235 Shewanella putrefaciens CN-32 5081082 YP_001181790.1 CDS Sputcn32_0256 NC_009438.1 272702 272983 D KEGG: son:SO2129 transposase, putative; hypothetical protein 272702..272983 Shewanella putrefaciens CN-32 5081083 YP_001181791.1 CDS Sputcn32_0257 NC_009438.1 273165 274640 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ecs:ECs0608 putative 2-component sensor protein; sensor kinase CusS complement(273165..274640) Shewanella putrefaciens CN-32 5081084 YP_001181792.1 CDS Sputcn32_0258 NC_009438.1 274633 275313 R response regulator in two-component regulatory system with CusS; regulates the copper efflux system; DNA-binding transcriptional activator CusR complement(274633..275313) Shewanella putrefaciens CN-32 5081085 YP_001181793.1 CDS Sputcn32_0259 NC_009438.1 275503 276888 D with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system outer membrane protein CusC 275503..276888 Shewanella putrefaciens CN-32 5081086 YP_001181794.1 CDS Sputcn32_0260 NC_009438.1 276917 277270 D KEGG: ecj:JW0562 periplasmic copper-binding protein; copper-binding protein 276917..277270 Shewanella putrefaciens CN-32 5081087 YP_001181795.1 CDS Sputcn32_0261 NC_009438.1 277384 278676 D with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system membrane fusion protein CusB 277384..278676 Shewanella putrefaciens CN-32 5081088 YP_001181796.1 CDS Sputcn32_0262 NC_009438.1 278687 281833 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ecp:ECP_0606 putative cation efflux system protein CusA; CzcA family heavy metal efflux protein 278687..281833 Shewanella putrefaciens CN-32 5081089 YP_001181797.1 CDS Sputcn32_0263 NC_009438.1 281929 282360 D PFAM: protein of unknown function DUF411; KEGG: mca:MCA0560 hypothetical protein; hypothetical protein 281929..282360 Shewanella putrefaciens CN-32 5081090 YP_001181798.1 CDS Sputcn32_0264 NC_009438.1 282487 284934 D KEGG: sal:Sala_2544 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 282487..284934 Shewanella putrefaciens CN-32 5081091 YP_001181799.1 CDS Sputcn32_0265 NC_009438.1 284975 285172 D KEGG: cvi:CV3215 hypothetical protein; hypothetical protein 284975..285172 Shewanella putrefaciens CN-32 5081092 YP_001181800.1 CDS Sputcn32_0266 NC_009438.1 285206 285943 R PFAM: peptidase M23B; KEGG: stm:STM1890 putative peptidase; peptidase M23B complement(285206..285943) Shewanella putrefaciens CN-32 5081093 YP_001181801.1 CDS Sputcn32_0267 NC_009438.1 286232 286681 R KEGG: spt:SPA2166 possible copper-binding protein; hypothetical protein complement(286232..286681) Shewanella putrefaciens CN-32 5081094 YP_001181802.1 CDS Sputcn32_0269 NC_009438.1 287569 287919 R KEGG: sfr:Sfri_0213 likely secreted protein containing plastocyanin domain; plastocyanin domain-containing protein complement(287569..287919) Shewanella putrefaciens CN-32 5081096 YP_001181803.1 CDS Sputcn32_0270 NC_009438.1 287930 290176 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_0212 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(287930..290176) Shewanella putrefaciens CN-32 5081097 YP_001181804.1 CDS Sputcn32_0271 NC_009438.1 290176 290646 R PFAM: regulatory protein, MerR; KEGG: sfr:Sfri_0211 transcriptional regulator, MerR family protein; MerR family transcriptional regulator complement(290176..290646) Shewanella putrefaciens CN-32 5081098 YP_001181805.1 CDS Sputcn32_0272 NC_009438.1 290767 291201 R KEGG: sfr:Sfri_1966 hypothetical protein; hypothetical protein complement(290767..291201) Shewanella putrefaciens CN-32 5081099 YP_001181806.1 CDS Sputcn32_0273 NC_009438.1 291293 291637 R KEGG: sfr:Sfri_1965 hypothetical protein; hypothetical protein complement(291293..291637) Shewanella putrefaciens CN-32 5081100 YP_001181807.1 CDS Sputcn32_0275 NC_009438.1 292164 293228 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: sme:SMb21045 putative reverse transcriptasematurase protein; RNA-directed DNA polymerase complement(292164..293228) Shewanella putrefaciens CN-32 5081102 YP_001181808.1 CDS Sputcn32_0276 NC_009438.1 293225 294058 R PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit complement(293225..294058) Shewanella putrefaciens CN-32 5081103 YP_001181809.1 CDS Sputcn32_0277 NC_009438.1 294097 294408 R PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein complement(294097..294408) Shewanella putrefaciens CN-32 5081104 YP_001181810.1 CDS Sputcn32_0278 NC_009438.1 294467 295090 R KEGG: ade:Adeh_2330 hypothetical protein; hypothetical protein complement(294467..295090) Shewanella putrefaciens CN-32 5081105 YP_001181811.1 CDS Sputcn32_0279 NC_009438.1 295147 295320 R KEGG: vfi:VFA1085 hypothetical protein; hypothetical protein complement(295147..295320) Shewanella putrefaciens CN-32 5081106 YP_001181812.1 CDS Sputcn32_0280 NC_009438.1 295331 295531 R KEGG: cps:CPS_2062 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase complement(295331..295531) Shewanella putrefaciens CN-32 5081107 YP_001181813.1 CDS Sputcn32_0281 NC_009438.1 295616 296953 D KEGG: gme:Gmet_1465 hypothetical protein; hypothetical protein 295616..296953 Shewanella putrefaciens CN-32 5081108 YP_001181814.1 CDS Sputcn32_0282 NC_009438.1 297048 300197 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(297048..300197) Shewanella putrefaciens CN-32 5081109 YP_001181815.1 CDS Sputcn32_0283 NC_009438.1 300207 301745 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SOA0154 heavy metal efflux protein, putative; RND family efflux transporter MFP subunit complement(300207..301745) Shewanella putrefaciens CN-32 5081110 YP_001181816.1 CDS Sputcn32_0284 NC_009438.1 301767 302027 R KEGG: son:SOA0155 hypothetical protein; hypothetical protein complement(301767..302027) Shewanella putrefaciens CN-32 5081111 YP_001181817.1 CDS Sputcn32_0285 NC_009438.1 302279 302719 R KEGG: son:SOA0156 hypothetical protein; hypothetical protein complement(302279..302719) Shewanella putrefaciens CN-32 5081112 YP_001181818.1 CDS Sputcn32_0286 NC_009438.1 303207 303770 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein 303207..303770 Shewanella putrefaciens CN-32 5081113 YP_001181819.1 CDS Sputcn32_0287 NC_009438.1 303844 304119 R PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein; hypothetical protein complement(303844..304119) Shewanella putrefaciens CN-32 5081114 YP_001181820.1 CDS Sputcn32_0288 NC_009438.1 304103 304768 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_3775 putative methyltransferase; putative methyltransferase complement(304103..304768) Shewanella putrefaciens CN-32 5081115 YP_001181821.1 CDS Sputcn32_0289 NC_009438.1 304982 306430 D KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 304982..306430 Shewanella putrefaciens CN-32 5081116 YP_001181822.1 CDS Sputcn32_0290 NC_009438.1 306434 307150 D KEGG: shm:Shewmr7_3846 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 306434..307150 Shewanella putrefaciens CN-32 5081117 YP_001181823.1 CDS Sputcn32_0291 NC_009438.1 307147 308112 D PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_3772 protein of unknown function DUF214; hypothetical protein 307147..308112 Shewanella putrefaciens CN-32 5081118 YP_001181824.1 CDS Sputcn32_0292 NC_009438.1 308360 309217 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 308360..309217 Shewanella putrefaciens CN-32 5081119 YP_001181825.1 CDS Sputcn32_0293 NC_009438.1 310518 311060 D PFAM: Fimbrial protein; KEGG: bam:Bamb_2833 fimbrial protein; fimbrial protein 310518..311060 Shewanella putrefaciens CN-32 5081120 YP_001181826.1 CDS Sputcn32_0295 NC_009438.1 311981 313354 D KEGG: yps:YPTB0157 hypothetical protein; hypothetical protein 311981..313354 Shewanella putrefaciens CN-32 5081122 YP_001181827.1 CDS Sputcn32_0296 NC_009438.1 313743 314063 D hypothetical protein 313743..314063 Shewanella putrefaciens CN-32 5081123 YP_001181828.1 CDS Sputcn32_0297 NC_009438.1 314187 315530 D KEGG: pau:PA14_59750 fimbrial subunit; fimbrial subunit 314187..315530 Shewanella putrefaciens CN-32 5081124 YP_001181829.1 CDS Sputcn32_0298 NC_009438.1 315969 316511 D PFAM: Fimbrial protein; KEGG: bam:Bamb_2833 fimbrial protein; fimbrial protein 315969..316511 Shewanella putrefaciens CN-32 5081125 YP_001181830.1 CDS Sputcn32_0299 NC_009438.1 316590 317318 D PFAM: pili assembly chaperone; KEGG: ypn:YPN_0086 fimbrial chaperone; pili assembly chaperone 316590..317318 Shewanella putrefaciens CN-32 5081126 YP_001181831.1 CDS Sputcn32_0300 NC_009438.1 317329 319881 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pae:PA2130 probable fimbrial biogenesis usher protein; fimbrial biogenesis outer membrane usher protein 317329..319881 Shewanella putrefaciens CN-32 5081127 YP_001181832.1 CDS Sputcn32_0301 NC_009438.1 319895 321265 D KEGG: pau:PA14_59750 fimbrial subunit; fimbrial subunit 319895..321265 Shewanella putrefaciens CN-32 5081180 YP_001181833.1 CDS Sputcn32_0302 NC_009438.1 321427 322161 D PFAM: pili assembly chaperone; KEGG: rme:Rmet_1663 pili assembly chaperone; pili assembly chaperone 321427..322161 Shewanella putrefaciens CN-32 5081181 YP_001181834.1 CDS Sputcn32_0303 NC_009438.1 322756 326346 R KEGG: psb:Psyr_2113 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; extracellular solute-binding protein, family 3; multi-sensor hybrid histidine kinase complement(322756..326346) Shewanella putrefaciens CN-32 5081182 YP_001181835.1 CDS Sputcn32_0304 NC_009438.1 326343 326966 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pfo:Pfl_4515 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(326343..326966) Shewanella putrefaciens CN-32 5081183 YP_001181836.1 CDS Sputcn32_0305 NC_009438.1 327334 328572 D PFAM: EAL domain protein; response regulator receiver; KEGG: pau:PA14_12810 probable two-component response regulator; response regulator receiver modulated diguanylate phosphodiesterase 327334..328572 Shewanella putrefaciens CN-32 5081184 YP_001181837.1 CDS Sputcn32_0306 NC_009438.1 328682 329380 D KEGG: she:Shewmr4_2113 hypothetical protein; hypothetical protein 328682..329380 Shewanella putrefaciens CN-32 5081185 YP_001181838.1 CDS Sputcn32_0307 NC_009438.1 329452 330870 R TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase complement(329452..330870) Shewanella putrefaciens CN-32 5081186 YP_001181839.1 CDS Sputcn32_0308 NC_009438.1 330872 331966 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(330872..331966) Shewanella putrefaciens CN-32 5081187 YP_001181840.1 CDS Sputcn32_0309 NC_009438.1 331994 332782 R PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3768 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(331994..332782) Shewanella putrefaciens CN-32 5081188 YP_001181841.1 CDS Sputcn32_0310 NC_009438.1 332782 334503 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(332782..334503) Shewanella putrefaciens CN-32 5081189 YP_001181842.1 CDS Sputcn32_0311 NC_009438.1 334686 335654 R PFAM: regulatory protein, LysR; KEGG: shm:Shewmr7_3839 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(334686..335654) Shewanella putrefaciens CN-32 5081190 YP_001181843.1 CDS Sputcn32_0312 NC_009438.1 336066 336542 D KEGG: she:Shewmr4_3765 hypothetical protein; hypothetical protein 336066..336542 Shewanella putrefaciens CN-32 5081191 YP_001181844.1 CDS Sputcn32_0313 NC_009438.1 336620 337084 D KEGG: she:Shewmr4_3764 formate-dependent nitrite reductase; formate-dependent nitrite reductase 336620..337084 Shewanella putrefaciens CN-32 5081192 YP_001181845.1 CDS Sputcn32_0314 NC_009438.1 337089 337775 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal; 4Fe-4S ferredoxin 337089..337775 Shewanella putrefaciens CN-32 5081193 YP_001181846.1 CDS Sputcn32_0315 NC_009438.1 337772 338713 D PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase, NrfD 337772..338713 Shewanella putrefaciens CN-32 5081194 YP_001181847.1 CDS Sputcn32_0316 NC_009438.1 338992 339423 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(338992..339423) Shewanella putrefaciens CN-32 5081195 YP_001181848.1 CDS Sputcn32_0317 NC_009438.1 339673 340935 D uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 339673..340935 Shewanella putrefaciens CN-32 5081196 YP_001181849.1 CDS Sputcn32_0318 NC_009438.1 340918 341376 R PFAM: protein of unknown function DUF1332; KEGG: shm:Shewmr7_3830 protein of unknown function DUF1332; hypothetical protein complement(340918..341376) Shewanella putrefaciens CN-32 5081197 YP_001181850.1 CDS Sputcn32_0319 NC_009438.1 341474 342004 R KEGG: she:Shewmr4_3756 hypothetical protein; hypothetical protein complement(341474..342004) Shewanella putrefaciens CN-32 5081198 YP_001181851.1 CDS Sputcn32_0320 NC_009438.1 342194 342901 D KEGG: shm:Shewmr7_3828 hypothetical protein; hypothetical protein 342194..342901 Shewanella putrefaciens CN-32 5081199 YP_001181852.1 CDS Sputcn32_0321 NC_009438.1 342936 344390 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: she:Shewmr4_3754 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 342936..344390 Shewanella putrefaciens CN-32 5081200 YP_001181853.1 CDS Sputcn32_0322 NC_009438.1 344400 344729 R KEGG: shm:Shewmr7_3826 hypothetical protein; hypothetical protein complement(344400..344729) Shewanella putrefaciens CN-32 5081201 YP_001181854.1 CDS Sputcn32_0323 NC_009438.1 345092 346963 D PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 345092..346963 Shewanella putrefaciens CN-32 5081202 YP_001181855.1 CDS Sputcn32_0324 NC_009438.1 347066 348037 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(347066..348037) Shewanella putrefaciens CN-32 5081203 YP_001181856.1 CDS Sputcn32_0325 NC_009438.1 348151 349359 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter 348151..349359 Shewanella putrefaciens CN-32 5081204 YP_001181857.1 CDS Sputcn32_0326 NC_009438.1 349483 350088 D PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein 349483..350088 Shewanella putrefaciens CN-32 5081205 YP_001181858.1 CDS Sputcn32_0327 NC_009438.1 350449 352569 R KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(350449..352569) Shewanella putrefaciens CN-32 5081206 YP_001181859.1 CDS Sputcn32_0328 NC_009438.1 352876 353229 D KEGG: she:Shewmr4_3747 hypothetical protein; hypothetical protein 352876..353229 Shewanella putrefaciens CN-32 5081207 YP_001181860.1 CDS Sputcn32_0329 NC_009438.1 353300 353938 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3819 methyltransferase type 11; type 11 methyltransferase 353300..353938 Shewanella putrefaciens CN-32 5081208 YP_001181861.1 CDS Sputcn32_0330 NC_009438.1 354269 356326 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3798 TonB-dependent receptor; TonB-dependent receptor 354269..356326 Shewanella putrefaciens CN-32 5081209 YP_001181862.1 CDS Sputcn32_0331 NC_009438.1 356420 357403 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: she:Shewmr4_3726 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(356420..357403) Shewanella putrefaciens CN-32 5081210 YP_001181863.1 CDS Sputcn32_0332 NC_009438.1 357483 358052 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3796 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(357483..358052) Shewanella putrefaciens CN-32 5081211 YP_001181864.1 CDS Sputcn32_0333 NC_009438.1 358082 360934 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3795 twin-arginine translocation pathway signal; molybdopterin oxidoreductase complement(358082..360934) Shewanella putrefaciens CN-32 5081212 YP_001181865.1 CDS Sputcn32_0334 NC_009438.1 360952 361152 R KEGG: shm:Shewmr7_3794 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(360952..361152) Shewanella putrefaciens CN-32 5081213 YP_001181866.1 CDS Sputcn32_0335 NC_009438.1 361537 362565 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: shm:Shewmr7_3793 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(361537..362565) Shewanella putrefaciens CN-32 5081214 YP_001181867.1 CDS Sputcn32_0336 NC_009438.1 362615 363211 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin complement(362615..363211) Shewanella putrefaciens CN-32 5081215 YP_001181868.1 CDS Sputcn32_0337 NC_009438.1 363238 366087 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase complement(363238..366087) Shewanella putrefaciens CN-32 5081216 YP_001181869.1 CDS Sputcn32_0338 NC_009438.1 366106 366336 R KEGG: son:SO4508 hypothetical protein; hypothetical protein complement(366106..366336) Shewanella putrefaciens CN-32 5081217 YP_001181870.1 CDS Sputcn32_0339 NC_009438.1 366463 367140 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: shm:Shewmr7_3789 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(366463..367140) Shewanella putrefaciens CN-32 5081218 YP_001181871.1 CDS Sputcn32_0340 NC_009438.1 367151 368812 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(367151..368812) Shewanella putrefaciens CN-32 5081219 YP_001181872.1 CDS Sputcn32_0341 NC_009438.1 369000 369656 R KEGG: shm:Shewmr7_3787 hypothetical protein; hypothetical protein complement(369000..369656) Shewanella putrefaciens CN-32 5081220 YP_001181873.1 CDS Sputcn32_0342 NC_009438.1 369656 370120 R KEGG: son:SO4504 hypothetical protein; hypothetical protein complement(369656..370120) Shewanella putrefaciens CN-32 5081221 YP_001181874.1 CDS Sputcn32_0343 NC_009438.1 370426 371322 D PFAM: formate dehydrogenase, subunit FdhD; KEGG: she:Shewmr4_3714 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 370426..371322 Shewanella putrefaciens CN-32 5081222 YP_001181875.1 CDS Sputcn32_0344 NC_009438.1 371385 372290 D TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_3713 DNA binding domain, excisionase family; DNA binding domain-containing protein 371385..372290 Shewanella putrefaciens CN-32 5081223 YP_001181876.1 CDS Sputcn32_0345 NC_009438.1 378641 379153 D KEGG: shm:Shewmr7_3783 hypothetical protein; hypothetical protein 378641..379153 Shewanella putrefaciens CN-32 5081279 YP_001181877.1 CDS Sputcn32_0346 NC_009438.1 379564 379773 D KEGG: son:SO4490 hypothetical protein; hypothetical protein 379564..379773 Shewanella putrefaciens CN-32 5081280 YP_001181878.1 CDS Sputcn32_0347 NC_009438.1 380239 381642 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: bsu:BG12951 similar to 2-oxoglutarate/malate translocator; anion transporter 380239..381642 Shewanella putrefaciens CN-32 5081281 YP_001181879.1 CDS Sputcn32_0348 NC_009438.1 381710 383218 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: ppr:PBPRA2409 putative fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 381710..383218 Shewanella putrefaciens CN-32 5081282 YP_001181880.1 CDS Sputcn32_0349 NC_009438.1 383302 383979 R PFAM: response regulator receiver; Helix-turn-helix, type 11 domain protein; KEGG: vpa:VP1711 response regulator; response regulator receiver complement(383302..383979) Shewanella putrefaciens CN-32 5081283 YP_001181881.1 CDS Sputcn32_0350 NC_009438.1 383969 385636 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: bld:BLi01245 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism complement(383969..385636) Shewanella putrefaciens CN-32 5081284 YP_001181882.1 CDS Sputcn32_0351 NC_009438.1 385820 386185 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(385820..386185) Shewanella putrefaciens CN-32 5081285 YP_001181883.1 CDS Sputcn32_0352 NC_009438.1 386198 386581 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(386198..386581) Shewanella putrefaciens CN-32 5081286 YP_001181884.1 CDS Sputcn32_0353 NC_009438.1 386583 387323 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(386583..387323) Shewanella putrefaciens CN-32 5081287 YP_001181885.1 CDS Sputcn32_0354 NC_009438.1 387323 389098 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(387323..389098) Shewanella putrefaciens CN-32 5081288 YP_001181886.1 CDS Sputcn32_0355 NC_009438.1 389401 389970 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4489 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(389401..389970) Shewanella putrefaciens CN-32 5081289 YP_001181887.1 CDS Sputcn32_0356 NC_009438.1 389991 391307 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(389991..391307) Shewanella putrefaciens CN-32 5081290 YP_001181888.1 CDS Sputcn32_0357 NC_009438.1 391312 391971 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator; two component transcriptional regulator complement(391312..391971) Shewanella putrefaciens CN-32 5081291 YP_001181889.1 CDS Sputcn32_0358 NC_009438.1 391971 392237 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: shm:Shewmr7_3780 propeptide, PepSY amd peptidase M4; peptidase complement(391971..392237) Shewanella putrefaciens CN-32 5081292 YP_001181890.1 CDS Sputcn32_0359 NC_009438.1 392230 392793 R KEGG: son:SO4485 diheme cytochrome c; diheme cytochrome c complement(392230..392793) Shewanella putrefaciens CN-32 5081293 YP_001181891.1 CDS Sputcn32_0360 NC_009438.1 392884 393330 R KEGG: shm:Shewmr7_3778 cytochrome c-type protein Shp; cytochrome c-type protein Shp complement(392884..393330) Shewanella putrefaciens CN-32 5081294 YP_001181892.1 CDS Sputcn32_0361 NC_009438.1 393384 393971 R PFAM: cytochrome B561; KEGG: she:Shewmr4_0244 cytochrome b561; cytochrome B561 complement(393384..393971) Shewanella putrefaciens CN-32 5081295 YP_001181893.1 CDS Sputcn32_0362 NC_009438.1 394188 394652 D KEGG: she:Shewmr4_0245 hypothetical protein; hypothetical protein 394188..394652 Shewanella putrefaciens CN-32 5081296 YP_001181894.1 CDS Sputcn32_0363 NC_009438.1 394733 395236 D KEGG: son:SO4481 hypothetical protein; hypothetical protein 394733..395236 Shewanella putrefaciens CN-32 5081297 YP_001181895.1 CDS Sputcn32_0364 NC_009438.1 395402 396922 R PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase complement(395402..396922) Shewanella putrefaciens CN-32 5081298 YP_001181896.1 CDS Sputcn32_0365 NC_009438.1 397183 399084 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3771 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 397183..399084 Shewanella putrefaciens CN-32 5081299 YP_001181897.1 CDS Sputcn32_0366 NC_009438.1 399127 400476 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; integral membrane sensor signal transduction histidine kinase complement(399127..400476) Shewanella putrefaciens CN-32 5081300 YP_001181898.1 CDS Sputcn32_0367 NC_009438.1 400491 401177 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator complement(400491..401177) Shewanella putrefaciens CN-32 5081301 YP_001181899.1 CDS Sputcn32_0368 NC_009438.1 401444 401935 D PFAM: protein of unknown function, Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein 401444..401935 Shewanella putrefaciens CN-32 5081302 YP_001181900.1 CDS Sputcn32_0369 NC_009438.1 401986 402867 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_3767 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 401986..402867 Shewanella putrefaciens CN-32 5081303 YP_001181901.1 CDS Sputcn32_0370 NC_009438.1 402886 403347 D KEGG: she:Shewmr4_0255 hypothetical protein; hypothetical protein 402886..403347 Shewanella putrefaciens CN-32 5081304 YP_001181902.1 CDS Sputcn32_0371 NC_009438.1 403434 404846 R KEGG: shm:Shewmr7_3764 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family complement(403434..404846) Shewanella putrefaciens CN-32 5081305 YP_001181903.1 CDS Sputcn32_0372 NC_009438.1 404884 405930 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: shm:Shewmr7_3763 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(404884..405930) Shewanella putrefaciens CN-32 5081306 YP_001181904.1 CDS Sputcn32_0373 NC_009438.1 406052 406591 R KEGG: shm:Shewmr7_3762 hypothetical protein; hypothetical protein complement(406052..406591) Shewanella putrefaciens CN-32 5081307 YP_001181905.1 CDS Sputcn32_0374 NC_009438.1 406777 407139 R KEGG: sdn:Sden_1385 glutathione S-transferase-like protein; glutathione S-transferase-like protein complement(406777..407139) Shewanella putrefaciens CN-32 5081308 YP_001181906.1 CDS Sputcn32_0375 NC_009438.1 407300 407665 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: vvu:VV20508 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(407300..407665) Shewanella putrefaciens CN-32 5081309 YP_001181907.1 CDS Sputcn32_0376 NC_009438.1 407799 408491 R PFAM: ThiJ/PfpI domain protein; KEGG: psb:Psyr_3319 ThiJ/PfpI; ThiJ/PfpI domain-containing protein complement(407799..408491) Shewanella putrefaciens CN-32 5081310 YP_001181908.1 CDS Sputcn32_0377 NC_009438.1 408563 409720 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(408563..409720) Shewanella putrefaciens CN-32 5081311 YP_001181909.1 CDS Sputcn32_0378 NC_009438.1 409863 410471 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_3760 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(409863..410471) Shewanella putrefaciens CN-32 5081312 YP_001181910.1 CDS Sputcn32_0379 NC_009438.1 410754 411065 R PFAM: protein of unknown function DUF1255; KEGG: shm:Shewmr7_3759 protein of unknown function DUF1255; hypothetical protein complement(410754..411065) Shewanella putrefaciens CN-32 5081313 YP_001181911.1 CDS Sputcn32_0380 NC_009438.1 411424 413379 D PFAM: chemotaxis sensory transducer; KEGG: shm:Shewmr7_3758 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 411424..413379 Shewanella putrefaciens CN-32 5081314 YP_001181912.1 CDS Sputcn32_0381 NC_009438.1 413512 415629 R PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_3757 protein of unknown function DUF323; hypothetical protein complement(413512..415629) Shewanella putrefaciens CN-32 5081315 YP_001181913.1 CDS Sputcn32_0382 NC_009438.1 415995 416390 D KEGG: she:Shewmr4_0265 hypothetical protein; hypothetical protein 415995..416390 Shewanella putrefaciens CN-32 5081316 YP_001181914.1 CDS Sputcn32_0383 NC_009438.1 416767 417621 D PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 416767..417621 Shewanella putrefaciens CN-32 5081317 YP_001181915.1 CDS Sputcn32_0384 NC_009438.1 417926 419386 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 417926..419386 Shewanella putrefaciens CN-32 5081318 YP_001181916.1 CDS Sputcn32_0385 NC_009438.1 419515 420210 D PFAM: 3-alpha; MOSC domain containing protein; KEGG: she:Shewmr4_0269 MOSC domain containing protein; MOSC domain-containing protein 419515..420210 Shewanella putrefaciens CN-32 5081319 YP_001181917.1 CDS Sputcn32_0386 NC_009438.1 420247 420603 D KEGG: shm:Shewmr7_3751 hypothetical protein; hypothetical protein 420247..420603 Shewanella putrefaciens CN-32 5081320 YP_001181918.1 CDS Sputcn32_0387 NC_009438.1 420671 422587 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3750 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(420671..422587) Shewanella putrefaciens CN-32 5081321 YP_001181919.1 CDS Sputcn32_0388 NC_009438.1 422933 424582 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: shm:Shewmr7_3749 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(422933..424582) Shewanella putrefaciens CN-32 5081322 YP_001181920.1 CDS moaA NC_009438.1 424919 425932 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 424919..425932 Shewanella putrefaciens CN-32 5081323 YP_001181921.1 CDS moaC NC_009438.1 426030 426506 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 426030..426506 Shewanella putrefaciens CN-32 5081324 YP_001181922.1 CDS Sputcn32_0391 NC_009438.1 426530 426781 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 426530..426781 Shewanella putrefaciens CN-32 5081325 YP_001181923.1 CDS Sputcn32_0392 NC_009438.1 426783 427244 D PFAM: molybdopterin biosynthesis MoaE; KEGG: she:Shewmr4_0276 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE 426783..427244 Shewanella putrefaciens CN-32 5081326 YP_001181924.1 CDS Sputcn32_0393 NC_009438.1 427301 428113 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0277 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 427301..428113 Shewanella putrefaciens CN-32 5081377 YP_001181925.1 CDS Sputcn32_0394 NC_009438.1 428110 428793 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3743 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 428110..428793 Shewanella putrefaciens CN-32 5081378 YP_001181926.1 CDS Sputcn32_0395 NC_009438.1 428774 429877 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3742 ABC transporter related; ABC transporter-like protein 428774..429877 Shewanella putrefaciens CN-32 5081379 YP_001181927.1 CDS Sputcn32_0396 NC_009438.1 430094 430615 D KEGG: shm:Shewmr7_3741 hypothetical protein; hypothetical protein 430094..430615 Shewanella putrefaciens CN-32 5081380 YP_001181928.1 CDS Sputcn32_0397 NC_009438.1 430657 431334 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator 430657..431334 Shewanella putrefaciens CN-32 5081381 YP_001181929.1 CDS Sputcn32_0398 NC_009438.1 431384 432640 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 431384..432640 Shewanella putrefaciens CN-32 5081382 YP_001181930.1 CDS Sputcn32_0399 NC_009438.1 432674 433363 D TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: she:Shewmr4_0283 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase Rlu family protein 432674..433363 Shewanella putrefaciens CN-32 5081383 YP_001181931.1 CDS Sputcn32_0400 NC_009438.1 433484 433651 D PFAM: protein of unknown function UPF0057; KEGG: shm:Shewmr7_3736 protein of unknown function UPF0057; hypothetical protein 433484..433651 Shewanella putrefaciens CN-32 5081384 YP_001181932.1 CDS Sputcn32_0401 NC_009438.1 433725 435896 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0286 TonB-dependent receptor; TonB-dependent receptor complement(433725..435896) Shewanella putrefaciens CN-32 5081385 YP_001181933.1 CDS Sputcn32_0402 NC_009438.1 436216 436380 D KEGG: son:SO4421 hypothetical protein; hypothetical protein 436216..436380 Shewanella putrefaciens CN-32 5081386 YP_001181934.1 CDS Sputcn32_0403 NC_009438.1 436397 436909 R PFAM: peptidase M23B; KEGG: son:SO4420 peptidase, M23/M37 family; peptidase M23B complement(436397..436909) Shewanella putrefaciens CN-32 5081387 YP_001181935.1 CDS Sputcn32_0404 NC_009438.1 436949 437527 R KEGG: son:SO4419 hypothetical protein; hypothetical protein complement(436949..437527) Shewanella putrefaciens CN-32 5081388 YP_001181936.1 CDS Sputcn32_0405 NC_009438.1 437533 438180 R PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein; CHAP domain-containing protein complement(437533..438180) Shewanella putrefaciens CN-32 5081389 YP_001181937.1 CDS Sputcn32_0406 NC_009438.1 438489 439667 D KEGG: she:Shewmr4_0294 hypothetical protein; hypothetical protein 438489..439667 Shewanella putrefaciens CN-32 5081390 YP_001181938.1 CDS Sputcn32_0407 NC_009438.1 439672 440793 D PFAM: aminotransferase, class V; KEGG: shm:Shewmr7_3724 aminotransferase, class V; class V aminotransferase 439672..440793 Shewanella putrefaciens CN-32 5081391 YP_001181939.1 CDS Sputcn32_0408 NC_009438.1 440882 441205 R KEGG: son:SO4412 hypothetical protein; hypothetical protein complement(440882..441205) Shewanella putrefaciens CN-32 5081392 YP_001181940.1 CDS Sputcn32_0409 NC_009438.1 441571 441765 D KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein 441571..441765 Shewanella putrefaciens CN-32 5081393 YP_001181941.1 CDS Sputcn32_0410 NC_009438.1 441963 442835 D KEGG: vch:VCA0021 hypothetical protein; hypothetical protein 441963..442835 Shewanella putrefaciens CN-32 5081394 YP_001181942.1 CDS Sputcn32_0411 NC_009438.1 443018 443890 D KEGG: vch:VCA0021 hypothetical protein; hypothetical protein 443018..443890 Shewanella putrefaciens CN-32 5081395 YP_001181943.1 CDS glnA NC_009438.1 444209 445618 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(444209..445618) Shewanella putrefaciens CN-32 5081396 YP_001181944.1 CDS Sputcn32_0413 NC_009438.1 446653 448464 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA 446653..448464 Shewanella putrefaciens CN-32 5081397 YP_001181945.1 CDS Sputcn32_0414 NC_009438.1 448536 449576 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4407 GGDEF family protein; diguanylate cyclase complement(448536..449576) Shewanella putrefaciens CN-32 5081398 YP_001181946.1 CDS Sputcn32_0415 NC_009438.1 449985 452171 D KEGG: she:Shewmr4_0311 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 449985..452171 Shewanella putrefaciens CN-32 5081399 YP_001181947.1 CDS Sputcn32_0416 NC_009438.1 452242 453456 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3712 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(452242..453456) Shewanella putrefaciens CN-32 5081400 YP_001181948.1 CDS Sputcn32_0417 NC_009438.1 453975 454196 R KEGG: shm:Shewmr7_3709 hypothetical protein; hypothetical protein complement(453975..454196) Shewanella putrefaciens CN-32 5081401 YP_001181949.1 CDS rbn NC_009438.1 454278 455162 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 454278..455162 Shewanella putrefaciens CN-32 5081402 YP_001181950.1 CDS Sputcn32_0419 NC_009438.1 455234 455671 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 455234..455671 Shewanella putrefaciens CN-32 5081403 YP_001181951.1 CDS Sputcn32_0420 NC_009438.1 455761 456210 D TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 455761..456210 Shewanella putrefaciens CN-32 5081404 YP_001181952.1 CDS Sputcn32_0421 NC_009438.1 456367 457587 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: mag:amb2240 TPR repeat; peptidase S1 and S6, chymotrypsin/Hap 456367..457587 Shewanella putrefaciens CN-32 5081405 YP_001181953.1 CDS Sputcn32_0422 NC_009438.1 457599 458132 D hypothetical protein 457599..458132 Shewanella putrefaciens CN-32 5081406 YP_001181954.1 CDS Sputcn32_0423 NC_009438.1 458321 458917 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 458321..458917 Shewanella putrefaciens CN-32 5081407 YP_001181955.1 CDS Sputcn32_0424 NC_009438.1 459054 459620 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_3700 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(459054..459620) Shewanella putrefaciens CN-32 5081408 YP_001181956.1 CDS Sputcn32_0425 NC_009438.1 459784 460971 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: shm:Shewmr7_3699 benzoate transporter; benzoate transporter 459784..460971 Shewanella putrefaciens CN-32 5081409 YP_001181957.1 CDS Sputcn32_0426 NC_009438.1 461022 461498 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_3696 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(461022..461498) Shewanella putrefaciens CN-32 5081410 YP_001181958.1 CDS Sputcn32_0427 NC_009438.1 461819 462571 D KEGG: she:Shewmr4_3023 hypothetical protein; hypothetical protein 461819..462571 Shewanella putrefaciens CN-32 5081411 YP_001181959.1 CDS Sputcn32_0428 NC_009438.1 463101 463400 R PFAM: plasmid stabilization system; KEGG: she:Shewmr4_0332 plasmid stabilization system; plasmid stabilization system protein complement(463101..463400) Shewanella putrefaciens CN-32 5081412 YP_001181960.1 CDS Sputcn32_0429 NC_009438.1 463409 463651 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: shm:Shewmr7_3693 prevent-host-death family protein; prevent-host-death family protein complement(463409..463651) Shewanella putrefaciens CN-32 5081413 YP_001181961.1 CDS Sputcn32_0430 NC_009438.1 463931 464674 R KEGG: she:Shewmr4_0334 hypothetical protein; hypothetical protein complement(463931..464674) Shewanella putrefaciens CN-32 5081414 YP_001181962.1 CDS Sputcn32_0431 NC_009438.1 464706 465965 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(464706..465965) Shewanella putrefaciens CN-32 5081415 YP_001181963.1 CDS fabG NC_009438.1 465966 466691 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(465966..466691) Shewanella putrefaciens CN-32 5081416 YP_001181964.1 CDS Sputcn32_0433 NC_009438.1 466804 467337 R KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein complement(466804..467337) Shewanella putrefaciens CN-32 5081417 YP_001181965.1 CDS Sputcn32_0434 NC_009438.1 467342 468559 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(467342..468559) Shewanella putrefaciens CN-32 5081418 YP_001181966.1 CDS Sputcn32_0435 NC_009438.1 468588 469352 R KEGG: she:Shewmr4_0339 hypothetical protein; hypothetical protein complement(468588..469352) Shewanella putrefaciens CN-32 5081419 YP_001181967.1 CDS Sputcn32_0436 NC_009438.1 469357 470646 R PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein; FAD dependent oxidoreductase complement(469357..470646) Shewanella putrefaciens CN-32 5081420 YP_001181968.1 CDS Sputcn32_0437 NC_009438.1 470670 473111 R KEGG: she:Shewmr4_0341 hypothetical protein; hypothetical protein complement(470670..473111) Shewanella putrefaciens CN-32 5081421 YP_001181969.1 CDS Sputcn32_0438 NC_009438.1 473114 473881 R KEGG: son:SO4376 hypothetical protein; hypothetical protein complement(473114..473881) Shewanella putrefaciens CN-32 5081422 YP_001181970.1 CDS Sputcn32_0439 NC_009438.1 473878 474312 R PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_3683 thioesterase superfamily protein; thioesterase superfamily protein complement(473878..474312) Shewanella putrefaciens CN-32 5081423 YP_001181971.1 CDS Sputcn32_0440 NC_009438.1 474309 475883 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: she:Shewmr4_0344 histidine ammonia-lyase; histidine ammonia-lyase complement(474309..475883) Shewanella putrefaciens CN-32 5081424 YP_001181972.1 CDS Sputcn32_0441 NC_009438.1 475880 477769 R PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: shm:Shewmr7_3681 glycosyl transferase, family 2; glycosyl transferase family protein complement(475880..477769) Shewanella putrefaciens CN-32 5081425 YP_001181973.1 CDS Sputcn32_0442 NC_009438.1 477763 478176 R KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein complement(477763..478176) Shewanella putrefaciens CN-32 5081426 YP_001181974.1 CDS Sputcn32_0443 NC_009438.1 478169 479533 R KEGG: shm:Shewmr7_3679 hypothetical protein; hypothetical protein complement(478169..479533) Shewanella putrefaciens CN-32 5080698 YP_001181975.1 CDS Sputcn32_0444 NC_009438.1 479530 480078 R KEGG: son:SO4370 hypothetical protein; hypothetical protein complement(479530..480078) Shewanella putrefaciens CN-32 5080699 YP_001181976.1 CDS Sputcn32_0445 NC_009438.1 480078 480326 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(480078..480326) Shewanella putrefaciens CN-32 5080700 YP_001181977.1 CDS Sputcn32_0446 NC_009438.1 480336 480590 R KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein complement(480336..480590) Shewanella putrefaciens CN-32 5080701 YP_001181978.1 CDS Sputcn32_0447 NC_009438.1 480574 481449 R PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_0351 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(480574..481449) Shewanella putrefaciens CN-32 5080702 YP_001181979.1 CDS Sputcn32_0448 NC_009438.1 481442 482185 R KEGG: she:Shewmr4_0352 hypothetical protein; hypothetical protein complement(481442..482185) Shewanella putrefaciens CN-32 5080703 YP_001181980.1 CDS Sputcn32_0449 NC_009438.1 482525 483424 R KEGG: son:SO4365 hypothetical protein; hypothetical protein complement(482525..483424) Shewanella putrefaciens CN-32 5080704 YP_001181981.1 CDS Sputcn32_0450 NC_009438.1 483607 485697 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(483607..485697) Shewanella putrefaciens CN-32 5080705 YP_001181982.1 CDS Sputcn32_0451 NC_009438.1 485930 486643 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 485930..486643 Shewanella putrefaciens CN-32 5080706 YP_001181983.1 CDS Sputcn32_0452 NC_009438.1 486761 488206 R PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_0916 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(486761..488206) Shewanella putrefaciens CN-32 5080707 YP_001181984.1 CDS Sputcn32_0453 NC_009438.1 488359 488712 D hypothetical protein 488359..488712 Shewanella putrefaciens CN-32 5080708 YP_001181985.1 CDS Sputcn32_0454 NC_009438.1 489267 489623 D hypothetical protein 489267..489623 Shewanella putrefaciens CN-32 5080709 YP_001181986.1 CDS Sputcn32_0455 NC_009438.1 489949 490812 R PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: shm:Shewmr7_0351 hypothetical protein; hypothetical protein complement(489949..490812) Shewanella putrefaciens CN-32 5080710 YP_001181987.1 CDS rph NC_009438.1 491350 492063 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 491350..492063 Shewanella putrefaciens CN-32 5080711 YP_001181988.1 CDS pyrE NC_009438.1 492231 492872 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 492231..492872 Shewanella putrefaciens CN-32 5080712 YP_001181989.1 CDS folE NC_009438.1 492931 493575 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(492931..493575) Shewanella putrefaciens CN-32 5080713 YP_001181990.1 CDS slmA NC_009438.1 493799 494392 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(493799..494392) Shewanella putrefaciens CN-32 5080714 YP_001181991.1 CDS dut NC_009438.1 494425 494883 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(494425..494883) Shewanella putrefaciens CN-32 5080715 YP_001181992.1 CDS Sputcn32_0461 NC_009438.1 494880 496100 R KEGG: shm:Shewmr7_0358 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(494880..496100) Shewanella putrefaciens CN-32 5080716 YP_001181993.1 CDS radC NC_009438.1 496223 496900 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 496223..496900 Shewanella putrefaciens CN-32 5080717 YP_001181994.1 CDS rpmB NC_009438.1 497022 497258 D required for 70S ribosome assembly; 50S ribosomal protein L28 497022..497258 Shewanella putrefaciens CN-32 5080718 YP_001181995.1 CDS rpmG NC_009438.1 497265 497438 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 497265..497438 Shewanella putrefaciens CN-32 5080719 YP_001181996.1 CDS Sputcn32_0465 NC_009438.1 497762 499081 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 497762..499081 Shewanella putrefaciens CN-32 5080720 YP_001181997.1 CDS Sputcn32_0466 NC_009438.1 499197 499715 D KEGG: son:SO4244 hypothetical protein; hypothetical protein 499197..499715 Shewanella putrefaciens CN-32 5080721 YP_001181998.1 CDS Sputcn32_0467 NC_009438.1 499762 500646 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein complement(499762..500646) Shewanella putrefaciens CN-32 5080722 YP_001181999.1 CDS Sputcn32_0468 NC_009438.1 500839 501303 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: she:Shewmr4_3591 uncharacterized domain 1; hypothetical protein complement(500839..501303) Shewanella putrefaciens CN-32 5080723 YP_001182000.1 CDS Sputcn32_0469 NC_009438.1 501600 503423 D KEGG: she:Shewmr4_3590 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 501600..503423 Shewanella putrefaciens CN-32 5080724 YP_001182001.1 CDS Sputcn32_0470 NC_009438.1 503405 505183 R SMART: Tetratricopeptide domain protein; KEGG: she:Shewmr4_3589 response regulator receiver protein; hypothetical protein complement(503405..505183) Shewanella putrefaciens CN-32 5080725 YP_001182002.1 CDS Sputcn32_0471 NC_009438.1 505691 507259 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 505691..507259 Shewanella putrefaciens CN-32 5080726 YP_001182003.1 CDS Sputcn32_0472 NC_009438.1 507330 508424 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 507330..508424 Shewanella putrefaciens CN-32 5080727 YP_001182004.1 CDS Sputcn32_0473 NC_009438.1 508424 509848 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 508424..509848 Shewanella putrefaciens CN-32 5080728 YP_001182005.1 CDS leuD NC_009438.1 509876 510481 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 509876..510481 Shewanella putrefaciens CN-32 5080729 YP_001182006.1 CDS Sputcn32_0475 NC_009438.1 511001 512356 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: shm:Shewmr7_0372 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 511001..512356 Shewanella putrefaciens CN-32 5080730 YP_001182007.1 CDS Sputcn32_0476 NC_009438.1 512536 514020 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase 512536..514020 Shewanella putrefaciens CN-32 5080731 YP_001182008.1 CDS Sputcn32_0477 NC_009438.1 514127 514456 R KEGG: shm:Shewmr7_0374 hypothetical protein; hypothetical protein complement(514127..514456) Shewanella putrefaciens CN-32 5080732 YP_001182009.1 CDS Sputcn32_0478 NC_009438.1 514915 515373 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 514915..515373 Shewanella putrefaciens CN-32 5080733 YP_001182010.1 CDS mraW NC_009438.1 515405 516346 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: shm:Shewmr7_0378 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 515405..516346 Shewanella putrefaciens CN-32 5080734 YP_001182011.1 CDS Sputcn32_0480 NC_009438.1 516357 516671 D PFAM: cell division protein FtsL; KEGG: she:Shewmr4_3577 cell division protein FtsL; cell division protein FtsL 516357..516671 Shewanella putrefaciens CN-32 5080735 YP_001182012.1 CDS Sputcn32_0481 NC_009438.1 516685 518436 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase 516685..518436 Shewanella putrefaciens CN-32 5080736 YP_001182013.1 CDS murE NC_009438.1 518433 519935 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 518433..519935 Shewanella putrefaciens CN-32 5080737 YP_001182014.1 CDS Sputcn32_0483 NC_009438.1 519932 521314 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 519932..521314 Shewanella putrefaciens CN-32 5080738 YP_001182015.1 CDS mraY NC_009438.1 521315 522397 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 521315..522397 Shewanella putrefaciens CN-32 5080739 YP_001182016.1 CDS murD NC_009438.1 522404 523723 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 522404..523723 Shewanella putrefaciens CN-32 5080740 YP_001182017.1 CDS Sputcn32_0486 NC_009438.1 523713 524924 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW 523713..524924 Shewanella putrefaciens CN-32 5080741 YP_001182018.1 CDS murG NC_009438.1 524924 526012 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 524924..526012 Shewanella putrefaciens CN-32 5080742 YP_001182019.1 CDS murC NC_009438.1 526015 527481 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 526015..527481 Shewanella putrefaciens CN-32 5080743 YP_001182020.1 CDS Sputcn32_0489 NC_009438.1 527633 528382 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: shm:Shewmr7_0388 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 527633..528382 Shewanella putrefaciens CN-32 5080744 YP_001182021.1 CDS Sputcn32_0490 NC_009438.1 528363 529598 D PFAM: cell division protein FtsA; KEGG: shm:Shewmr7_0389 cell division protein FtsA; cell division protein FtsA 528363..529598 Shewanella putrefaciens CN-32 5080745 YP_001182022.1 CDS Sputcn32_0491 NC_009438.1 529632 530819 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 529632..530819 Shewanella putrefaciens CN-32 5080746 YP_001182023.1 CDS lpxC NC_009438.1 531000 531920 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 531000..531920 Shewanella putrefaciens CN-32 5080747 YP_001182024.1 CDS Sputcn32_0493 NC_009438.1 531932 532378 R KEGG: shm:Shewmr7_0392 hypothetical protein; hypothetical protein complement(531932..532378) Shewanella putrefaciens CN-32 5078434 YP_001182025.1 CDS Sputcn32_0494 NC_009438.1 532406 533305 D PFAM: peptidase M23B; KEGG: shm:Shewmr7_0393 peptidase M23B; peptidase M23B 532406..533305 Shewanella putrefaciens CN-32 5078435 YP_001182026.1 CDS Sputcn32_0495 NC_009438.1 533366 536095 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 533366..536095 Shewanella putrefaciens CN-32 5078436 YP_001182027.1 CDS Sputcn32_0496 NC_009438.1 542884 543285 R KEGG: sfr:Sfri_1559 ISSod10, transposase OrfB; hypothetical protein complement(542884..543285) Shewanella putrefaciens CN-32 5078444 YP_001182028.1 CDS Sputcn32_0497 NC_009438.1 543297 544304 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(543297..544304) Shewanella putrefaciens CN-32 5078445 YP_001182029.1 CDS Sputcn32_0498 NC_009438.1 544314 546188 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase complement(544314..546188) Shewanella putrefaciens CN-32 5078446 YP_001182030.1 CDS Sputcn32_0499 NC_009438.1 546181 546984 R PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease complement(546181..546984) Shewanella putrefaciens CN-32 5078447 YP_001182031.1 CDS Sputcn32_0500 NC_009438.1 546984 547511 R KEGG: son:SO4205 hypothetical protein; hypothetical protein complement(546984..547511) Shewanella putrefaciens CN-32 5078448 YP_001182032.1 CDS Sputcn32_0501 NC_009438.1 547558 548307 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: she:Shewmr4_3556 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC complement(547558..548307) Shewanella putrefaciens CN-32 5078449 YP_001182033.1 CDS Sputcn32_0502 NC_009438.1 548311 548787 R TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: shm:Shewmr7_0401 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB complement(548311..548787) Shewanella putrefaciens CN-32 5078450 YP_001182034.1 CDS Sputcn32_0503 NC_009438.1 548795 549034 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: shm:Shewmr7_0402 twin-arginine translocation protein, TatA/E family subunit; twin arginine-targeting protein translocase complement(548795..549034) Shewanella putrefaciens CN-32 5078451 YP_001182035.1 CDS Sputcn32_0504 NC_009438.1 549094 550743 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: shm:Shewmr7_0403 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase complement(549094..550743) Shewanella putrefaciens CN-32 5078452 YP_001182036.1 CDS Sputcn32_0505 NC_009438.1 550740 551360 R PFAM: protein of unknown function DUF1243; KEGG: she:Shewmr4_3552 protein of unknown function DUF1243; hypothetical protein complement(550740..551360) Shewanella putrefaciens CN-32 5078453 YP_001182037.1 CDS Sputcn32_0506 NC_009438.1 551360 552115 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; ubiquinone/menaquinone biosynthesis methyltransferase complement(551360..552115) Shewanella putrefaciens CN-32 5078454 YP_001182038.1 CDS Sputcn32_0507 NC_009438.1 552360 553424 R PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: she:Shewmr4_3550 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase complement(552360..553424) Shewanella putrefaciens CN-32 5078455 YP_001182039.1 CDS Sputcn32_0508 NC_009438.1 553552 554037 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(553552..554037) Shewanella putrefaciens CN-32 5078456 YP_001182040.1 CDS Sputcn32_0509 NC_009438.1 554356 554610 D KEGG: shm:Shewmr7_0408 hypothetical protein; hypothetical protein 554356..554610 Shewanella putrefaciens CN-32 5078457 YP_001182041.1 CDS Sputcn32_0510 NC_009438.1 554971 555483 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase 554971..555483 Shewanella putrefaciens CN-32 5078036 YP_001182042.1 CDS Sputcn32_0511 NC_009438.1 555557 556597 D KEGG: shm:Shewmr7_0410 hypothetical protein; hypothetical protein 555557..556597 Shewanella putrefaciens CN-32 5078037 YP_001182043.1 CDS Sputcn32_0512 NC_009438.1 556739 558157 D KEGG: she:Shewmr4_3545 hypothetical protein; hypothetical protein 556739..558157 Shewanella putrefaciens CN-32 5078038 YP_001182044.1 CDS Sputcn32_0513 NC_009438.1 558265 559893 R PFAM: chemotaxis sensory transducer; KEGG: ilo:IL1068 methyl-accepting chemotaxis protein with ligand-binding sensor domain and HAMP domain; methyl-accepting chemotaxis sensory transducer complement(558265..559893) Shewanella putrefaciens CN-32 5078039 YP_001182045.1 CDS Sputcn32_0514 NC_009438.1 560099 560713 R KEGG: shm:Shewmr7_0412 DedA family protein; DedA family protein complement(560099..560713) Shewanella putrefaciens CN-32 5078040 YP_001182046.1 CDS Sputcn32_0515 NC_009438.1 560912 561832 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(560912..561832) Shewanella putrefaciens CN-32 5078041 YP_001182047.1 CDS Sputcn32_0516 NC_009438.1 561969 562430 R PFAM: conserved hypothetical protein 22; KEGG: shm:Shewmr7_0414 conserved hypothetical protein 22; hypothetical protein complement(561969..562430) Shewanella putrefaciens CN-32 5078042 YP_001182048.1 CDS Sputcn32_0517 NC_009438.1 562566 565019 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3540 TonB-dependent receptor; TonB-dependent receptor complement(562566..565019) Shewanella putrefaciens CN-32 5078043 YP_001182049.1 CDS Sputcn32_0518 NC_009438.1 565272 565847 D KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La 565272..565847 Shewanella putrefaciens CN-32 5078044 YP_001182050.1 CDS Sputcn32_0519 NC_009438.1 565901 566818 D PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0418 pseudouridine synthase; pseudouridine synthase 565901..566818 Shewanella putrefaciens CN-32 5078045 YP_001182051.1 CDS Sputcn32_0520 NC_009438.1 566933 568237 D PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: she:Shewmr4_3530 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 566933..568237 Shewanella putrefaciens CN-32 5078046 YP_001182052.1 CDS Sputcn32_0521 NC_009438.1 568234 568785 D PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: she:Shewmr4_3529 response regulator receiver protein; two component Fis family transcriptional regulator 568234..568785 Shewanella putrefaciens CN-32 5078047 YP_001182053.1 CDS Sputcn32_0522 NC_009438.1 568817 569293 D KEGG: she:Shewmr4_3528 hypothetical protein; hypothetical protein 568817..569293 Shewanella putrefaciens CN-32 5078048 YP_001182054.1 CDS Sputcn32_0523 NC_009438.1 569342 570049 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_3527 short-chain dehydrogenase/reductase SDR; C factor cell-cell signaling protein complement(569342..570049) Shewanella putrefaciens CN-32 5078049 YP_001182055.1 CDS Sputcn32_0524 NC_009438.1 570093 571658 R PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein; deoxyribodipyrimidine photolyase-like protein complement(570093..571658) Shewanella putrefaciens CN-32 5078050 YP_001182056.1 CDS Sputcn32_0525 NC_009438.1 572243 572953 D hypothetical protein 572243..572953 Shewanella putrefaciens CN-32 5078051 YP_001182057.1 CDS Sputcn32_0526 NC_009438.1 573432 574019 R KEGG: shm:Shewmr7_0431 hypothetical protein; hypothetical protein complement(573432..574019) Shewanella putrefaciens CN-32 5078052 YP_001182058.1 CDS Sputcn32_0527 NC_009438.1 574118 574504 R PFAM: protein of unknown function DUF971; KEGG: she:Shewmr4_3523 protein of unknown function DUF971; hypothetical protein complement(574118..574504) Shewanella putrefaciens CN-32 5078053 YP_001182059.1 CDS hslU NC_009438.1 574711 576039 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(574711..576039) Shewanella putrefaciens CN-32 5078054 YP_001182060.1 CDS Sputcn32_0529 NC_009438.1 576059 576583 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(576059..576583) Shewanella putrefaciens CN-32 5078055 YP_001182061.1 CDS Sputcn32_0530 NC_009438.1 576734 577312 R KEGG: son:SO4159 hypothetical protein; hypothetical protein complement(576734..577312) Shewanella putrefaciens CN-32 5078056 YP_001182062.1 CDS Sputcn32_0531 NC_009438.1 577478 578029 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: lpn:lpg1988 dihydrofolate reductase; deaminase-reductase domain-containing protein complement(577478..578029) Shewanella putrefaciens CN-32 5078057 YP_001182063.1 CDS Sputcn32_0532 NC_009438.1 578040 578321 R KEGG: she:Shewmr4_3518 hypothetical protein; hypothetical protein complement(578040..578321) Shewanella putrefaciens CN-32 5078058 YP_001182064.1 CDS Sputcn32_0533 NC_009438.1 578755 579939 R KEGG: son:SO4160 flagellar biosynthesis protein, putative; flagellar biosynthesis protein complement(578755..579939) Shewanella putrefaciens CN-32 5078059 YP_001182065.1 CDS Sputcn32_0534 NC_009438.1 580151 580753 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_0436 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(580151..580753) Shewanella putrefaciens CN-32 5078060 YP_001182066.1 CDS Sputcn32_0535 NC_009438.1 581017 582825 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3516 histidine kinase; histidine kinase 581017..582825 Shewanella putrefaciens CN-32 5078061 YP_001182067.1 CDS Sputcn32_0536 NC_009438.1 582855 584012 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO4150 transporter, putative; sulfate transporter complement(582855..584012) Shewanella putrefaciens CN-32 5078062 YP_001182068.1 CDS Sputcn32_0537 NC_009438.1 584204 584995 R KEGG: pat:Patl_1924 hypothetical protein; hypothetical protein complement(584204..584995) Shewanella putrefaciens CN-32 5078063 YP_001182069.1 CDS Sputcn32_0538 NC_009438.1 585195 586733 R KEGG: son:SO4139 hypothetical protein; hypothetical protein complement(585195..586733) Shewanella putrefaciens CN-32 5078064 YP_001182070.1 CDS Sputcn32_0539 NC_009438.1 586850 587686 R PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_3509 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(586850..587686) Shewanella putrefaciens CN-32 5078065 YP_001182071.1 CDS Sputcn32_0540 NC_009438.1 587856 588335 D KEGG: shm:Shewmr7_0444 hypothetical protein; hypothetical protein 587856..588335 Shewanella putrefaciens CN-32 5078066 YP_001182072.1 CDS Sputcn32_0541 NC_009438.1 588679 589854 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; diaminopimelate decarboxylase 588679..589854 Shewanella putrefaciens CN-32 5078067 YP_001182073.1 CDS Sputcn32_0542 NC_009438.1 589917 590129 R PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein complement(589917..590129) Shewanella putrefaciens CN-32 5078068 YP_001182074.1 CDS Sputcn32_0543 NC_009438.1 590665 591423 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 590665..591423 Shewanella putrefaciens CN-32 5078069 YP_001182075.1 CDS Sputcn32_0544 NC_009438.1 591526 592278 R KEGG: shm:Shewmr7_0448 hypothetical protein; hypothetical protein complement(591526..592278) Shewanella putrefaciens CN-32 5078070 YP_001182076.1 CDS Sputcn32_0545 NC_009438.1 592755 593225 D PFAM: protein of unknown function DUF107; KEGG: shm:Shewmr7_0449 protein of unknown function DUF107; hypothetical protein 592755..593225 Shewanella putrefaciens CN-32 5078071 YP_001182077.1 CDS Sputcn32_0546 NC_009438.1 593237 594172 D PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein 593237..594172 Shewanella putrefaciens CN-32 5078072 YP_001182078.1 CDS Sputcn32_0547 NC_009438.1 594172 595116 D PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein 594172..595116 Shewanella putrefaciens CN-32 5078073 YP_001182079.1 CDS Sputcn32_0548 NC_009438.1 595307 595531 R KEGG: son:SO4126 hypothetical protein; hypothetical protein complement(595307..595531) Shewanella putrefaciens CN-32 5078074 YP_001182080.1 CDS Sputcn32_0549 NC_009438.1 595826 596518 R PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein complement(595826..596518) Shewanella putrefaciens CN-32 5078075 YP_001182081.1 CDS argS NC_009438.1 596522 598267 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(596522..598267) Shewanella putrefaciens CN-32 5078076 YP_001182082.1 CDS Sputcn32_0551 NC_009438.1 598378 600573 R KEGG: she:Shewmr4_3495 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' complement(598378..600573) Shewanella putrefaciens CN-32 5078077 YP_001182083.1 CDS Sputcn32_0552 NC_009438.1 600641 601543 D KEGG: son:SO4121 hypothetical protein; hypothetical protein 600641..601543 Shewanella putrefaciens CN-32 5078078 YP_001182084.2 CDS rpmE NC_009438.1 601722 601934 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 601722..601934 Shewanella putrefaciens CN-32 5078079 YP_001182085.1 CDS Sputcn32_0554 NC_009438.1 602448 603692 D PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: shm:Shewmr7_0460 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase 602448..603692 Shewanella putrefaciens CN-32 5078080 YP_001182086.1 CDS Sputcn32_0555 NC_009438.1 603879 605783 D regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 603879..605783 Shewanella putrefaciens CN-32 5078081 YP_001182087.1 CDS Sputcn32_0556 NC_009438.1 606009 606887 D KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI 606009..606887 Shewanella putrefaciens CN-32 5078082 YP_001182088.1 CDS Sputcn32_0557 NC_009438.1 606884 607486 D KEGG: shm:Shewmr7_0463 hypothetical protein; hypothetical protein 606884..607486 Shewanella putrefaciens CN-32 5078083 YP_001182089.1 CDS Sputcn32_0558 NC_009438.1 607483 608133 D KEGG: shm:Shewmr7_0464 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 607483..608133 Shewanella putrefaciens CN-32 5078084 YP_001182090.1 CDS Sputcn32_0559 NC_009438.1 608120 608437 D KEGG: shm:Shewmr7_0465 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 608120..608437 Shewanella putrefaciens CN-32 5078085 YP_001182091.1 CDS Sputcn32_0560 NC_009438.1 608452 610128 D TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3486 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 608452..610128 Shewanella putrefaciens CN-32 5080598 YP_001182092.1 CDS Sputcn32_0561 NC_009438.1 610135 611061 D KEGG: she:Shewmr4_3485 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 610135..611061 Shewanella putrefaciens CN-32 5080599 YP_001182093.1 CDS Sputcn32_0562 NC_009438.1 611058 612248 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; hypothetical protein 611058..612248 Shewanella putrefaciens CN-32 5080600 YP_001182094.1 CDS Sputcn32_0563 NC_009438.1 612245 614005 D PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: shm:Shewmr7_0469 type II secretion system protein E; type II secretion system protein E 612245..614005 Shewanella putrefaciens CN-32 5080601 YP_001182095.1 CDS Sputcn32_0564 NC_009438.1 614008 615228 D PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein 614008..615228 Shewanella putrefaciens CN-32 5080602 YP_001182096.1 CDS Sputcn32_0565 NC_009438.1 615272 615766 D KEGG: son:SO4107 hypothetical protein; hypothetical protein 615272..615766 Shewanella putrefaciens CN-32 5080603 YP_001182097.1 CDS Sputcn32_0566 NC_009438.1 615843 616460 D KEGG: son:SO4106 MSHA pilin protein MshB; MSHA pilin protein MshB 615843..616460 Shewanella putrefaciens CN-32 5080604 YP_001182098.1 CDS Sputcn32_0567 NC_009438.1 616512 617021 D KEGG: she:Shewmr4_3479 methylation site containing protein; methylation site containing protein 616512..617021 Shewanella putrefaciens CN-32 5080605 YP_001182099.1 CDS Sputcn32_0568 NC_009438.1 617035 617544 D KEGG: she:Shewmr4_3478 methylation site containing protein; methylation site containing protein 617035..617544 Shewanella putrefaciens CN-32 5080606 YP_001182100.1 CDS Sputcn32_0569 NC_009438.1 617752 618240 D KEGG: son:SO4104 MSHA pilin protein MshC; MSHA pilin protein MshC 617752..618240 Shewanella putrefaciens CN-32 5080607 YP_001182101.1 CDS Sputcn32_0570 NC_009438.1 618230 618778 D KEGG: shm:Shewmr7_0475 methylation site containing protein; methylation site containing protein 618230..618778 Shewanella putrefaciens CN-32 5080608 YP_001182102.1 CDS Sputcn32_0571 NC_009438.1 618778 619623 D KEGG: son:SO4102 MSHA biogenesis protein MshO; MSHA biogenesis protein MshO 618778..619623 Shewanella putrefaciens CN-32 5080609 YP_001182103.1 CDS Sputcn32_0572 NC_009438.1 619658 620101 D KEGG: shm:Shewmr7_0477 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 619658..620101 Shewanella putrefaciens CN-32 5080610 YP_001182104.1 CDS Sputcn32_0573 NC_009438.1 620094 623870 D KEGG: shm:Shewmr7_0478 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 620094..623870 Shewanella putrefaciens CN-32 5080611 YP_001182105.1 CDS Sputcn32_0574 NC_009438.1 624214 625263 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 624214..625263 Shewanella putrefaciens CN-32 5080612 YP_001182106.1 CDS Sputcn32_0575 NC_009438.1 625307 626311 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 625307..626311 Shewanella putrefaciens CN-32 5080613 YP_001182107.1 CDS Sputcn32_0576 NC_009438.1 626311 626799 D PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD 626311..626799 Shewanella putrefaciens CN-32 5080614 YP_001182108.1 CDS Sputcn32_0577 NC_009438.1 626802 627398 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: shm:Shewmr7_0482 maf protein; maf protein 626802..627398 Shewanella putrefaciens CN-32 5080615 YP_001182109.1 CDS Sputcn32_0578 NC_009438.1 627580 629088 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 627580..629088 Shewanella putrefaciens CN-32 5080616 YP_001182110.1 CDS Sputcn32_0579 NC_009438.1 629088 633239 D KEGG: she:Shewmr4_3467 hypothetical protein; hypothetical protein 629088..633239 Shewanella putrefaciens CN-32 5080617 YP_001182111.1 CDS Sputcn32_0580 NC_009438.1 633163 633993 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 633163..633993 Shewanella putrefaciens CN-32 5080618 YP_001182112.1 CDS Sputcn32_0581 NC_009438.1 634127 635575 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; C69 family peptidase 634127..635575 Shewanella putrefaciens CN-32 5080619 YP_001182113.1 CDS Sputcn32_0582 NC_009438.1 635694 637088 D PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_0487 outer membrane efflux protein; outer membrane efflux protein 635694..637088 Shewanella putrefaciens CN-32 5080620 YP_001182114.1 CDS Sputcn32_0583 NC_009438.1 637078 638052 D PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein 637078..638052 Shewanella putrefaciens CN-32 5080621 YP_001182115.1 CDS Sputcn32_0584 NC_009438.1 638121 639347 D PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein; ABC transporter 638121..639347 Shewanella putrefaciens CN-32 5080622 YP_001182116.1 CDS Sputcn32_0585 NC_009438.1 639349 640497 D PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3461 ABC-2 type transporter; ABC transporter 639349..640497 Shewanella putrefaciens CN-32 5080623 YP_001182117.1 CDS Sputcn32_0586 NC_009438.1 640729 641616 D PFAM: Ion transport protein; KEGG: sde:Sde_1761 cold shock protein; Ion transport protein 640729..641616 Shewanella putrefaciens CN-32 5080624 YP_001182118.1 CDS Sputcn32_0587 NC_009438.1 642040 643371 D PFAM: amino acid permease-associated region; KEGG: she:Shewmr4_3458 amino acid permease-associated region; amino acid permease-associated protein 642040..643371 Shewanella putrefaciens CN-32 5080625 YP_001182119.1 CDS Sputcn32_0588 NC_009438.1 643572 644642 R KEGG: pfo:Pfl_3517 hypothetical protein; hypothetical protein complement(643572..644642) Shewanella putrefaciens CN-32 5080626 YP_001182120.1 CDS Sputcn32_0589 NC_009438.1 644791 645411 R KEGG: bam:Bamb_5633 hypothetical protein; hypothetical protein complement(644791..645411) Shewanella putrefaciens CN-32 5080627 YP_001182121.1 CDS Sputcn32_0590 NC_009438.1 645496 647880 R PFAM: Catalase domain protein; KEGG: nmu:Nmul_A1515 catalase; catalase complement(645496..647880) Shewanella putrefaciens CN-32 5080628 YP_001182122.1 CDS Sputcn32_0591 NC_009438.1 648173 648640 D PFAM: MgtC/SapB transporter; KEGG: pcr:Pcryo_2508 MgtC/SapB transporter; MgtC/SapB transporter 648173..648640 Shewanella putrefaciens CN-32 5080629 YP_001182123.1 CDS Sputcn32_0592 NC_009438.1 648789 651311 R PFAM: Ig domain protein, group 1 domain protein; KEGG: shm:Shewmr7_0493 Ig domain protein, group 1 domain protein; Ig domain-containing protein complement(648789..651311) Shewanella putrefaciens CN-32 5080630 YP_001182124.1 CDS Sputcn32_0593 NC_009438.1 651341 651877 R PFAM: protein of unknown function DUF615; KEGG: shm:Shewmr7_0494 protein of unknown function DUF615; hypothetical protein complement(651341..651877) Shewanella putrefaciens CN-32 5080631 YP_001182125.1 CDS Sputcn32_0594 NC_009438.1 652064 653407 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: she:Shewmr4_3455 peptidase U62, modulator of DNA gyrase; C69 family peptidase 652064..653407 Shewanella putrefaciens CN-32 5080632 YP_001182126.1 CDS Sputcn32_0595 NC_009438.1 653587 655728 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor complement(653587..655728) Shewanella putrefaciens CN-32 5080633 YP_001182127.1 CDS Sputcn32_0596 NC_009438.1 655894 656742 R KEGG: shm:Shewmr7_0497 hypothetical protein; hypothetical protein complement(655894..656742) Shewanella putrefaciens CN-32 5080634 YP_001182128.1 CDS Sputcn32_0597 NC_009438.1 656981 657217 D PFAM: protein of unknown function DUF331; KEGG: shm:Shewmr7_0498 protein of unknown function DUF331; hypothetical protein 656981..657217 Shewanella putrefaciens CN-32 5080635 YP_001182129.1 CDS Sputcn32_0598 NC_009438.1 657426 658829 D TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: chu:CHU_3664 fumarate hydratase/aspartate ammonia-lyase; class II fumarate hydratase 657426..658829 Shewanella putrefaciens CN-32 5080636 YP_001182130.1 CDS rimO NC_009438.1 658973 660391 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(658973..660391) Shewanella putrefaciens CN-32 5080637 YP_001182131.1 CDS Sputcn32_0600 NC_009438.1 660773 661486 D PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_0500 protein of unknown function DUF541; hypothetical protein 660773..661486 Shewanella putrefaciens CN-32 5080638 YP_001182132.1 CDS Sputcn32_0601 NC_009438.1 661690 662466 D PFAM: EAL domain protein; KEGG: ilo:IL0500 Signalling protein containing EAL domain; diguanylate phosphodiesterase 661690..662466 Shewanella putrefaciens CN-32 5080639 YP_001182133.1 CDS Sputcn32_0602 NC_009438.1 662607 663398 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_0501 methyltransferase type 11; type 11 methyltransferase 662607..663398 Shewanella putrefaciens CN-32 5080640 YP_001182134.1 CDS Sputcn32_0603 NC_009438.1 663442 665592 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3717 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(663442..665592) Shewanella putrefaciens CN-32 5080641 YP_001182135.1 CDS Sputcn32_0604 NC_009438.1 666155 666733 D PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein 666155..666733 Shewanella putrefaciens CN-32 5080642 YP_001182136.1 CDS Sputcn32_0605 NC_009438.1 667327 668202 D PFAM: MORN variant repeat protein; KEGG: fnu:FN2119 hypothetical exported 24-amino acid repeat protein; MORN repeat-containing protein 667327..668202 Shewanella putrefaciens CN-32 5080643 YP_001182137.1 CDS Sputcn32_0606 NC_009438.1 668546 669523 R PFAM: protein of unknown function DUF1568; KEGG: son:SO1241 hypothetical protein; hypothetical protein complement(668546..669523) Shewanella putrefaciens CN-32 5080644 YP_001182138.1 CDS Sputcn32_0607 NC_009438.1 669635 669937 D PFAM: transposase Tn5, dimerisation domain protein; KEGG: plu:plu4494 transposase, IS4 family; transposase Tn5 dimerisation subunit 669635..669937 Shewanella putrefaciens CN-32 5080645 YP_001182139.1 CDS Sputcn32_0608 NC_009438.1 670021 671124 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(670021..671124) Shewanella putrefaciens CN-32 5080646 YP_001182140.1 CDS Sputcn32_0609 NC_009438.1 671111 671527 R KEGG: shm:Shewmr7_0505 hypothetical protein; hypothetical protein complement(671111..671527) Shewanella putrefaciens CN-32 5080647 YP_001182141.1 CDS Sputcn32_0610 NC_009438.1 671645 672262 D KEGG: she:Shewmr4_3445 pentapeptide repeat protein; pentapeptide repeat-containing protein 671645..672262 Shewanella putrefaciens CN-32 5080400 YP_001182142.1 CDS Sputcn32_0612 NC_009438.1 674937 675503 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin 674937..675503 Shewanella putrefaciens CN-32 5080402 YP_001182143.1 CDS Sputcn32_0613 NC_009438.1 675506 676453 D PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase, NrfD 675506..676453 Shewanella putrefaciens CN-32 5080403 YP_001182144.1 CDS Sputcn32_0614 NC_009438.1 676559 677302 R PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein complement(676559..677302) Shewanella putrefaciens CN-32 5080404 YP_001182145.1 CDS Sputcn32_0615 NC_009438.1 677445 677759 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(677445..677759) Shewanella putrefaciens CN-32 5080405 YP_001182146.1 CDS Sputcn32_0616 NC_009438.1 677972 679135 D KEGG: son:SO4056 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine (thiol)-lyase 677972..679135 Shewanella putrefaciens CN-32 5080406 YP_001182147.1 CDS metL NC_009438.1 679147 681540 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 679147..681540 Shewanella putrefaciens CN-32 5080407 YP_001182148.1 CDS metF NC_009438.1 681777 682664 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 681777..682664 Shewanella putrefaciens CN-32 5080408 YP_001182149.1 CDS Sputcn32_0619 NC_009438.1 682727 684631 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(682727..684631) Shewanella putrefaciens CN-32 5080409 YP_001182150.1 CDS Sputcn32_0620 NC_009438.1 684819 685325 D PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_3435 transcriptional regulator, MarR family; MarR family transcriptional regulator 684819..685325 Shewanella putrefaciens CN-32 5080410 YP_001182151.1 CDS Sputcn32_0621 NC_009438.1 685334 686392 D PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0517 secretion protein HlyD family protein; secretion protein HlyD family protein 685334..686392 Shewanella putrefaciens CN-32 5080411 YP_001182152.1 CDS Sputcn32_0622 NC_009438.1 686560 687588 D KEGG: she:Shewmr4_3433 hypothetical protein; hypothetical protein 686560..687588 Shewanella putrefaciens CN-32 5080412 YP_001182153.1 CDS Sputcn32_0623 NC_009438.1 687731 688357 D KEGG: shm:Shewmr7_0519 cytochrome c family protein; cytochrome c family protein 687731..688357 Shewanella putrefaciens CN-32 5080413 YP_001182154.1 CDS Sputcn32_0624 NC_009438.1 688368 689435 D PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein; cytochrome c, class I 688368..689435 Shewanella putrefaciens CN-32 5080414 YP_001182155.1 CDS Sputcn32_0626 NC_009438.1 691195 693183 D KEGG: son:SO1428 outer membrane protein; outer membrane protein 691195..693183 Shewanella putrefaciens CN-32 5080416 YP_001182156.1 CDS Sputcn32_0627 NC_009438.1 693203 695713 D TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO1429 anaerobic dimethyl sulfoxide reductase, A subunit; anaerobic dimethyl sulfoxide reductase subunit A 693203..695713 Shewanella putrefaciens CN-32 5080417 YP_001182157.1 CDS Sputcn32_0628 NC_009438.1 695727 696401 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; 4Fe-4S ferredoxin 695727..696401 Shewanella putrefaciens CN-32 5080418 YP_001182158.1 CDS Sputcn32_0629 NC_009438.1 696458 697123 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO1431 hypothetical protein; cytoplasmic chaperone TorD family protein 696458..697123 Shewanella putrefaciens CN-32 5080419 YP_001182159.1 CDS Sputcn32_0630 NC_009438.1 697134 697601 D KEGG: son:SO1432 hypothetical protein; hypothetical protein 697134..697601 Shewanella putrefaciens CN-32 5080420 YP_001182160.1 CDS Sputcn32_0631 NC_009438.1 697828 698157 D KEGG: son:SO4044 hypothetical protein; hypothetical protein 697828..698157 Shewanella putrefaciens CN-32 5080421 YP_001182161.1 CDS Sputcn32_0632 NC_009438.1 698197 699309 R TIGRFAM: TonB family protein; KEGG: son:SO4043 TonB domain protein; TonB family protein complement(698197..699309) Shewanella putrefaciens CN-32 5080422 YP_001182162.1 CDS Sputcn32_0633 NC_009438.1 699489 700295 R KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein complement(699489..700295) Shewanella putrefaciens CN-32 5080423 YP_001182163.1 CDS Sputcn32_0634 NC_009438.1 700568 701587 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein 700568..701587 Shewanella putrefaciens CN-32 5080424 YP_001182164.1 CDS Sputcn32_0635 NC_009438.1 701617 702231 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 701617..702231 Shewanella putrefaciens CN-32 5080425 YP_001182165.1 CDS Sputcn32_0636 NC_009438.1 702228 702599 R KEGG: she:Shewmr4_3425 hypothetical protein; hypothetical protein complement(702228..702599) Shewanella putrefaciens CN-32 5080426 YP_001182166.1 CDS Sputcn32_0637 NC_009438.1 702738 704660 R PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase complement(702738..704660) Shewanella putrefaciens CN-32 5080427 YP_001182167.1 CDS Sputcn32_0638 NC_009438.1 704965 707841 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(704965..707841) Shewanella putrefaciens CN-32 5080428 YP_001182168.1 CDS Sputcn32_0639 NC_009438.1 708241 709608 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator superfamily transporter 708241..709608 Shewanella putrefaciens CN-32 5080429 YP_001182169.1 CDS Sputcn32_0640 NC_009438.1 709716 710426 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 709716..710426 Shewanella putrefaciens CN-32 5080430 YP_001182170.1 CDS Sputcn32_0641 NC_009438.1 710545 711123 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: she:Shewmr4_0607 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase 710545..711123 Shewanella putrefaciens CN-32 5080431 YP_001182171.1 CDS Sputcn32_0642 NC_009438.1 711290 713770 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3422 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 711290..713770 Shewanella putrefaciens CN-32 5080432 YP_001182172.1 CDS Sputcn32_0643 NC_009438.1 713958 715103 D PFAM: HDOD; KEGG: she:Shewmr4_0609 putative signal transduction protein; putative signal transduction protein 713958..715103 Shewanella putrefaciens CN-32 5080433 YP_001182173.1 CDS Sputcn32_0644 NC_009438.1 715151 716062 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: shm:Shewmr7_3420 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 715151..716062 Shewanella putrefaciens CN-32 5080434 YP_001182174.1 CDS argD NC_009438.1 716371 717588 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 716371..717588 Shewanella putrefaciens CN-32 5080435 YP_001182175.1 CDS Sputcn32_0646 NC_009438.1 717715 718734 D PFAM: arginine N-succinyltransferase beta subunit; KEGG: shm:Shewmr7_3418 arginine N-succinyltransferase; arginine N-succinyltransferase 717715..718734 Shewanella putrefaciens CN-32 5080436 YP_001182176.1 CDS astD NC_009438.1 718745 720205 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 718745..720205 Shewanella putrefaciens CN-32 5080437 YP_001182177.1 CDS Sputcn32_0648 NC_009438.1 720401 721204 D KEGG: she:Shewmr4_0614 hypothetical protein; hypothetical protein 720401..721204 Shewanella putrefaciens CN-32 5080438 YP_001182178.1 CDS Sputcn32_0649 NC_009438.1 721289 722617 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3415 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(721289..722617) Shewanella putrefaciens CN-32 5080439 YP_001182179.1 CDS Sputcn32_0650 NC_009438.1 722614 723288 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3414 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(722614..723288) Shewanella putrefaciens CN-32 5080440 YP_001182180.1 CDS Sputcn32_0651 NC_009438.1 723269 723616 R KEGG: shm:Shewmr7_3413 hypothetical protein; hypothetical protein complement(723269..723616) Shewanella putrefaciens CN-32 5080441 YP_001182181.1 CDS Sputcn32_0652 NC_009438.1 723699 724334 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(723699..724334) Shewanella putrefaciens CN-32 5080442 YP_001182182.1 CDS Sputcn32_0653 NC_009438.1 724757 725536 D KEGG: son:SO0625 hypothetical protein; hypothetical protein 724757..725536 Shewanella putrefaciens CN-32 5080443 YP_001182183.1 CDS Sputcn32_0654 NC_009438.1 725815 728022 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 725815..728022 Shewanella putrefaciens CN-32 5080444 YP_001182184.1 CDS Sputcn32_0655 NC_009438.1 728080 730620 D KEGG: shm:Shewmr7_3407 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB 728080..730620 Shewanella putrefaciens CN-32 5080445 YP_001182185.1 CDS Sputcn32_0656 NC_009438.1 730663 733002 D KEGG: she:Shewmr4_0624 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 730663..733002 Shewanella putrefaciens CN-32 5080446 YP_001182186.1 CDS Sputcn32_0657 NC_009438.1 733153 733431 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 733153..733431 Shewanella putrefaciens CN-32 5080447 YP_001182187.1 CDS Sputcn32_0658 NC_009438.1 733511 733906 D KEGG: shm:Shewmr7_3401 hypothetical protein; hypothetical protein 733511..733906 Shewanella putrefaciens CN-32 5080448 YP_001182188.1 CDS Sputcn32_0659 NC_009438.1 734051 734281 D KEGG: son:SO4012 hypothetical protein; hypothetical protein 734051..734281 Shewanella putrefaciens CN-32 5080449 YP_001182189.1 CDS Sputcn32_0660 NC_009438.1 734481 735182 D KEGG: son:SO4011 hypothetical protein; hypothetical protein 734481..735182 Shewanella putrefaciens CN-32 5082068 YP_001182190.1 CDS Sputcn32_0661 NC_009438.1 735271 736578 R KEGG: she:Shewmr4_0632 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer complement(735271..736578) Shewanella putrefaciens CN-32 5082069 YP_001182191.1 CDS Sputcn32_0662 NC_009438.1 736897 740004 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: she:Shewmr4_0633 molydopterin dinucleotide-binding region; molybdopterin oxidoreductase complement(736897..740004) Shewanella putrefaciens CN-32 5082070 YP_001182192.1 CDS Sputcn32_0663 NC_009438.1 740040 741122 R PFAM: Polysulphide reductase, NrfD; KEGG: she:Shewmr4_0634 polysulphide reductase, NrfD; polysulfide reductase, NrfD complement(740040..741122) Shewanella putrefaciens CN-32 5082071 YP_001182193.1 CDS Sputcn32_0664 NC_009438.1 741112 741894 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: she:Shewmr4_0635 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(741112..741894) Shewanella putrefaciens CN-32 5082072 YP_001182194.1 CDS Sputcn32_0665 NC_009438.1 742175 744187 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_0636 periplasmic sensor signal transduction histidine kinase; histidine kinase 742175..744187 Shewanella putrefaciens CN-32 5082073 YP_001182195.1 CDS Sputcn32_0666 NC_009438.1 744187 744798 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_0637 two component transcriptional regulator, LuxR family; response regulator receiver protein 744187..744798 Shewanella putrefaciens CN-32 5082074 YP_001182196.1 CDS Sputcn32_0667 NC_009438.1 745115 748786 D KEGG: she:Shewmr4_0638 hypothetical protein; hypothetical protein 745115..748786 Shewanella putrefaciens CN-32 5082075 YP_001182197.1 CDS Sputcn32_0668 NC_009438.1 748899 749552 D KEGG: shm:Shewmr7_3381 hypothetical protein; hypothetical protein 748899..749552 Shewanella putrefaciens CN-32 5082076 YP_001182198.1 CDS Sputcn32_0669 NC_009438.1 749601 750821 D KEGG: shm:Shewmr7_3380 hypothetical protein; hypothetical protein 749601..750821 Shewanella putrefaciens CN-32 5082077 YP_001182199.1 CDS Sputcn32_0670 NC_009438.1 750809 751681 D KEGG: son:SO4005 hypothetical protein; hypothetical protein 750809..751681 Shewanella putrefaciens CN-32 5082078 YP_001182200.1 CDS Sputcn32_0671 NC_009438.1 752073 753317 D PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_0642 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 752073..753317 Shewanella putrefaciens CN-32 5082079 YP_001182201.1 CDS Sputcn32_0672 NC_009438.1 753633 755339 D PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: pha:PSHAa2387 chemotaxis sensory protein; methyl-accepting chemotaxis sensory transducer 753633..755339 Shewanella putrefaciens CN-32 5082080 YP_001182202.1 CDS Sputcn32_0673 NC_009438.1 755675 756163 R PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein complement(755675..756163) Shewanella putrefaciens CN-32 5082081 YP_001182203.1 CDS Sputcn32_0674 NC_009438.1 756443 756790 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: nmu:Nmul_A1193 transport-associated; transport-associated 756443..756790 Shewanella putrefaciens CN-32 5082082 YP_001182204.1 CDS Sputcn32_0675 NC_009438.1 757789 758778 R PFAM: NERD domain protein; KEGG: she:Shewmr4_0648 NERD domain protein; NERD domain-containing protein complement(757789..758778) Shewanella putrefaciens CN-32 5082083 YP_001182205.1 CDS Sputcn32_0676 NC_009438.1 759468 760460 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(759468..760460) Shewanella putrefaciens CN-32 5082084 YP_001182206.1 CDS Sputcn32_0677 NC_009438.1 760765 763047 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3372 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 760765..763047 Shewanella putrefaciens CN-32 5082085 YP_001182207.1 CDS Sputcn32_0678 NC_009438.1 763112 763828 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3371 two component transcriptional regulator, winged helix family; two-component response regulator complement(763112..763828) Shewanella putrefaciens CN-32 5082086 YP_001182208.1 CDS Sputcn32_0679 NC_009438.1 764412 764846 D KEGG: son:SO3987 hypothetical protein; hypothetical protein 764412..764846 Shewanella putrefaciens CN-32 5082087 YP_001182209.1 CDS Sputcn32_0680 NC_009438.1 765270 766625 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 765270..766625 Shewanella putrefaciens CN-32 5082088 YP_001182210.1 CDS Sputcn32_0681 NC_009438.1 766705 767697 R PFAM: Mg2+ transporter protein, CorA family protein; KEGG: shm:Shewmr7_3367 Mg2 transporter protein, CorA family protein; Mg2+ transporter protein, CorA family protein complement(766705..767697) Shewanella putrefaciens CN-32 5082089 YP_001182211.1 CDS Sputcn32_0682 NC_009438.1 767861 768235 D PFAM: Uncharacterized conserved protein UCP006287; KEGG: she:Shewmr4_0656 uncharacterized conserved protein UCP006287; hypothetical protein 767861..768235 Shewanella putrefaciens CN-32 5082090 YP_001182212.1 CDS Sputcn32_0683 NC_009438.1 768324 768953 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: shm:Shewmr7_3365 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(768324..768953) Shewanella putrefaciens CN-32 5082091 YP_001182213.1 CDS Sputcn32_0684 NC_009438.1 768946 770748 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: shm:Shewmr7_3364 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ complement(768946..770748) Shewanella putrefaciens CN-32 5082092 YP_001182214.1 CDS nrfA NC_009438.1 770990 772393 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 770990..772393 Shewanella putrefaciens CN-32 5082093 YP_001182215.1 CDS Sputcn32_0686 NC_009438.1 772579 774057 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_3377 ABC transporter related; ABC transporter-like protein 772579..774057 Shewanella putrefaciens CN-32 5082094 YP_001182216.1 CDS Sputcn32_0687 NC_009438.1 774345 774641 D PFAM: protein of unknown function DUF134; Sigma-70, region 4 type 2; KEGG: son:SO0727 hypothetical protein; hypothetical protein 774345..774641 Shewanella putrefaciens CN-32 5082095 YP_001182217.1 CDS Sputcn32_0688 NC_009438.1 774638 775150 D KEGG: son:SO0728 hypothetical protein; hypothetical protein 774638..775150 Shewanella putrefaciens CN-32 5082096 YP_001182218.1 CDS Sputcn32_0689 NC_009438.1 775169 775534 R KEGG: she:Shewmr4_3375 thioredoxin domain; thioredoxin domain-containing protein complement(775169..775534) Shewanella putrefaciens CN-32 5082097 YP_001182219.1 CDS Sputcn32_0690 NC_009438.1 775871 776269 D PFAM: transcriptional regulator PadR family protein; KEGG: son:SO0734 hypothetical protein; PadR-like family transcriptional regulator 775871..776269 Shewanella putrefaciens CN-32 5082098 YP_001182220.1 CDS Sputcn32_0691 NC_009438.1 776271 777209 D KEGG: son:SO0735 hypothetical protein; hypothetical protein 776271..777209 Shewanella putrefaciens CN-32 5082099 YP_001182221.1 CDS Sputcn32_0692 NC_009438.1 777433 779469 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0737 TonB-dependent receptor, putative; TonB-dependent receptor 777433..779469 Shewanella putrefaciens CN-32 5082100 YP_001182222.1 CDS Sputcn32_0693 NC_009438.1 779641 780471 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: shm:Shewmr7_0586 transcriptional regulator, AraC family; AraC family transcriptional regulator 779641..780471 Shewanella putrefaciens CN-32 5082101 YP_001182223.1 CDS Sputcn32_0694 NC_009438.1 780581 781264 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: she:Shewmr4_3366 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 780581..781264 Shewanella putrefaciens CN-32 5082102 YP_001182224.1 CDS Sputcn32_0695 NC_009438.1 781334 782179 D KEGG: son:SO0764 hypothetical protein; hypothetical protein 781334..782179 Shewanella putrefaciens CN-32 5082103 YP_001182225.1 CDS Sputcn32_0696 NC_009438.1 782287 785370 R PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_0550 acriflavin resistance protein; acriflavin resistance protein complement(782287..785370) Shewanella putrefaciens CN-32 5082104 YP_001182226.1 CDS Sputcn32_0697 NC_009438.1 785374 786453 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_0551 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(785374..786453) Shewanella putrefaciens CN-32 5082105 YP_001182227.1 CDS Sputcn32_0698 NC_009438.1 786580 787569 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; LysR family transcriptional regulator 786580..787569 Shewanella putrefaciens CN-32 5082106 YP_001182228.1 CDS Sputcn32_0699 NC_009438.1 787572 788942 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein complement(787572..788942) Shewanella putrefaciens CN-32 5082107 YP_001182229.1 CDS groES NC_009438.1 789168 789458 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 789168..789458 Shewanella putrefaciens CN-32 5082108 YP_001182230.1 CDS groEL NC_009438.1 789516 791153 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 789516..791153 Shewanella putrefaciens CN-32 5082109 YP_001182231.1 CDS Sputcn32_0702 NC_009438.1 791324 791572 D hypothetical protein 791324..791572 Shewanella putrefaciens CN-32 5082110 YP_001182232.1 CDS Sputcn32_0703 NC_009438.1 791844 794150 R hypothetical protein complement(791844..794150) Shewanella putrefaciens CN-32 5082111 YP_001182233.1 CDS Sputcn32_0704 NC_009438.1 794232 795038 R PFAM: protein of unknown function DUF88; KEGG: sfr:Sfri_3658 protein of unknown function DUF88; hypothetical protein complement(794232..795038) Shewanella putrefaciens CN-32 5082112 YP_001182234.1 CDS Sputcn32_0705 NC_009438.1 795726 796274 R KEGG: shm:Shewmr7_3360 hypothetical protein; hypothetical protein complement(795726..796274) Shewanella putrefaciens CN-32 5082113 YP_001182235.1 CDS Sputcn32_0706 NC_009438.1 796632 797489 D PFAM: protein of unknown function RIO1; KEGG: shm:Shewmr7_3358 protein of unknown function RIO1; hypothetical protein 796632..797489 Shewanella putrefaciens CN-32 5082114 YP_001182236.1 CDS Sputcn32_0707 NC_009438.1 798332 798565 R PFAM: transposase IS3/IS911 family protein; KEGG: shm:Shewmr7_3357 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(798332..798565) Shewanella putrefaciens CN-32 5082115 YP_001182237.1 CDS Sputcn32_0708 NC_009438.1 799204 799890 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: she:Shewmr4_0666 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 799204..799890 Shewanella putrefaciens CN-32 5082116 YP_001182238.1 CDS Sputcn32_0709 NC_009438.1 800125 800949 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: she:Shewmr4_0667 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdate ABC transporter substrate-binding protein 800125..800949 Shewanella putrefaciens CN-32 5082117 YP_001182239.1 CDS Sputcn32_0710 NC_009438.1 801062 802426 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter complement(801062..802426) Shewanella putrefaciens CN-32 5082018 YP_001182240.1 CDS Sputcn32_0711 NC_009438.1 802639 802914 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: she:Shewmr4_0669 phosphocarrier, HPr family; phosphotransferase system, phosphocarrier protein HPr complement(802639..802914) Shewanella putrefaciens CN-32 5082019 YP_001182241.1 CDS Sputcn32_0712 NC_009438.1 802901 803755 R PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: shm:Shewmr7_3352 uncharacterized P-loop ATPase protein UPF0042; hypothetical protein complement(802901..803755) Shewanella putrefaciens CN-32 5082020 YP_001182242.1 CDS Sputcn32_0713 NC_009438.1 803752 804195 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: shm:Shewmr7_3351 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(803752..804195) Shewanella putrefaciens CN-32 5082021 YP_001182243.1 CDS Sputcn32_0714 NC_009438.1 804198 804485 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_3350 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(804198..804485) Shewanella putrefaciens CN-32 5082022 YP_001182244.1 CDS Sputcn32_0715 NC_009438.1 804514 805989 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(804514..805989) Shewanella putrefaciens CN-32 5082023 YP_001182245.1 CDS Sputcn32_0716 NC_009438.1 806093 806824 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3348 ABC transporter related; ABC transporter-like protein complement(806093..806824) Shewanella putrefaciens CN-32 5082024 YP_001182246.1 CDS Sputcn32_0717 NC_009438.1 806821 807375 R PFAM: OstA family protein; KEGG: shm:Shewmr7_3347 OstA family protein; OstA family protein complement(806821..807375) Shewanella putrefaciens CN-32 5082025 YP_001182247.1 CDS Sputcn32_0718 NC_009438.1 807362 807922 R PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein complement(807362..807922) Shewanella putrefaciens CN-32 5082026 YP_001182248.1 CDS Sputcn32_0719 NC_009438.1 807919 808470 R forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(807919..808470) Shewanella putrefaciens CN-32 5082027 YP_001182249.1 CDS Sputcn32_0720 NC_009438.1 808470 809447 R KEGG: shm:Shewmr7_3344 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(808470..809447) Shewanella putrefaciens CN-32 5082028 YP_001182250.1 CDS Sputcn32_0721 NC_009438.1 810101 810919 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3343 ABC transporter related; ABC transporter-like protein 810101..810919 Shewanella putrefaciens CN-32 5082029 YP_001182251.1 CDS Sputcn32_0722 NC_009438.1 810916 811701 D PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein 810916..811701 Shewanella putrefaciens CN-32 5082030 YP_001182252.1 CDS Sputcn32_0723 NC_009438.1 811758 812231 D PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein 811758..812231 Shewanella putrefaciens CN-32 5082031 YP_001182253.1 CDS Sputcn32_0724 NC_009438.1 812243 812908 D PFAM: toluene tolerance family protein; KEGG: shm:Shewmr7_3340 toluene tolerance family protein; toluene tolerance family protein 812243..812908 Shewanella putrefaciens CN-32 5082032 YP_001182254.1 CDS Sputcn32_0725 NC_009438.1 812905 813189 D KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein 812905..813189 Shewanella putrefaciens CN-32 5082033 YP_001182255.1 CDS Sputcn32_0726 NC_009438.1 813209 813466 D PFAM: BolA family protein; KEGG: shm:Shewmr7_3338 BolA family protein; BolA family protein 813209..813466 Shewanella putrefaciens CN-32 5082034 YP_001182256.1 CDS Sputcn32_0727 NC_009438.1 813476 814735 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 813476..814735 Shewanella putrefaciens CN-32 5082035 YP_001182257.1 CDS Sputcn32_0728 NC_009438.1 815165 816169 D PFAM: 2OG-Fe(II) oxygenase; KEGG: ilo:IL0163 2OG-Fe(II) oxygenase superfamily protein; 2OG-Fe(II) oxygenase 815165..816169 Shewanella putrefaciens CN-32 5082036 YP_001182258.1 CDS Sputcn32_0729 NC_009438.1 816188 817348 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: dge:Dgeo_0011 methionine gamma-lyase; methionine gamma-lyase 816188..817348 Shewanella putrefaciens CN-32 5082037 YP_001182259.1 CDS Sputcn32_0730 NC_009438.1 817447 818511 R KEGG: son:SO4655 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(817447..818511) Shewanella putrefaciens CN-32 5082038 YP_001182260.1 CDS Sputcn32_0731 NC_009438.1 818539 819390 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4654 sulfate ABC transporter, permease protein; sulfate ABC transporter permease complement(818539..819390) Shewanella putrefaciens CN-32 5082039 YP_001182261.1 CDS Sputcn32_0732 NC_009438.1 819395 820219 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4653 sulfate ABC transporter, permease protein; sulfate ABC transporter permease complement(819395..820219) Shewanella putrefaciens CN-32 5082040 YP_001182262.1 CDS Sputcn32_0733 NC_009438.1 820288 821301 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4652 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(820288..821301) Shewanella putrefaciens CN-32 5082041 YP_001182263.1 CDS Sputcn32_0734 NC_009438.1 821390 821563 R KEGG: son:SO4651 hypothetical protein; hypothetical protein complement(821390..821563) Shewanella putrefaciens CN-32 5082042 YP_001182264.1 CDS Sputcn32_0735 NC_009438.1 821633 822283 R PFAM: protein of unknown function DUF1234; KEGG: son:SO4650 hypothetical protein; hypothetical protein complement(821633..822283) Shewanella putrefaciens CN-32 5082043 YP_001182265.1 CDS Sputcn32_0736 NC_009438.1 822794 823099 D hypothetical protein 822794..823099 Shewanella putrefaciens CN-32 5082044 YP_001182266.1 CDS Sputcn32_0737 NC_009438.1 823099 824541 D PFAM: Radical SAM domain protein; KEGG: vpa:VPA0442 hypothetical protein; radical SAM domain-containing protein 823099..824541 Shewanella putrefaciens CN-32 5082045 YP_001182267.1 CDS Sputcn32_0738 NC_009438.1 824545 825378 R PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit complement(824545..825378) Shewanella putrefaciens CN-32 5082046 YP_001182268.1 CDS Sputcn32_0739 NC_009438.1 825417 825728 R PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein complement(825417..825728) Shewanella putrefaciens CN-32 5082047 YP_001182269.1 CDS Sputcn32_0740 NC_009438.1 825842 827044 D PFAM: Radical SAM domain protein; KEGG: vpa:VPA0443 hypothetical protein; radical SAM domain-containing protein 825842..827044 Shewanella putrefaciens CN-32 5082048 YP_001182270.1 CDS Sputcn32_0741 NC_009438.1 827850 828932 R TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; periplasmic serine protease DegS complement(827850..828932) Shewanella putrefaciens CN-32 5082049 YP_001182271.1 CDS Sputcn32_0742 NC_009438.1 829060 830415 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_3271 protease Do; protease Do complement(829060..830415) Shewanella putrefaciens CN-32 5082050 YP_001182272.1 CDS Sputcn32_0743 NC_009438.1 830834 831946 D PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3270 AFG1-family ATPase; AFG1 family ATPase 830834..831946 Shewanella putrefaciens CN-32 5082051 YP_001182273.1 CDS rplM NC_009438.1 832235 832663 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 832235..832663 Shewanella putrefaciens CN-32 5082052 YP_001182274.1 CDS rpsI NC_009438.1 832678 833070 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 832678..833070 Shewanella putrefaciens CN-32 5082053 YP_001182275.1 CDS Sputcn32_0746 NC_009438.1 833164 833364 D KEGG: shm:Shewmr7_0680 hypothetical protein; hypothetical protein 833164..833364 Shewanella putrefaciens CN-32 5082054 YP_001182276.1 CDS Sputcn32_0747 NC_009438.1 833431 834726 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 833431..834726 Shewanella putrefaciens CN-32 5082055 YP_001182277.1 CDS Sputcn32_0748 NC_009438.1 834836 835492 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: shm:Shewmr7_0682 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 834836..835492 Shewanella putrefaciens CN-32 5082056 YP_001182278.1 CDS Sputcn32_0749 NC_009438.1 835532 837955 D KEGG: shm:Shewmr7_0683 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 835532..837955 Shewanella putrefaciens CN-32 5082057 YP_001182279.1 CDS Sputcn32_0750 NC_009438.1 837956 838696 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 837956..838696 Shewanella putrefaciens CN-32 5082058 YP_001182280.1 CDS Sputcn32_0751 NC_009438.1 838761 840206 R PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_3262 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(838761..840206) Shewanella putrefaciens CN-32 5082059 YP_001182281.1 CDS Sputcn32_0752 NC_009438.1 840527 841270 R PFAM: protein of unknown function DUF481; KEGG: she:Shewmr4_3261 protein of unknown function DUF481; hypothetical protein complement(840527..841270) Shewanella putrefaciens CN-32 5082060 YP_001182282.1 CDS rpsF NC_009438.1 841484 841879 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 841484..841879 Shewanella putrefaciens CN-32 5082061 YP_001182283.1 CDS Sputcn32_0754 NC_009438.1 841888 842193 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 841888..842193 Shewanella putrefaciens CN-32 5082062 YP_001182284.1 CDS rpsR NC_009438.1 842205 842432 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 842205..842432 Shewanella putrefaciens CN-32 5082063 YP_001182285.1 CDS rplI NC_009438.1 842469 842921 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 842469..842921 Shewanella putrefaciens CN-32 5082064 YP_001182286.1 CDS Sputcn32_0757 NC_009438.1 843162 845360 R KEGG: shm:Shewmr7_0691 hypothetical protein; hypothetical protein complement(843162..845360) Shewanella putrefaciens CN-32 5082065 YP_001182287.1 CDS Sputcn32_0758 NC_009438.1 845479 846885 D KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 845479..846885 Shewanella putrefaciens CN-32 5082066 YP_001182288.1 CDS alr NC_009438.1 847028 848104 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 847028..848104 Shewanella putrefaciens CN-32 5082067 YP_001182289.1 CDS Sputcn32_0760 NC_009438.1 848178 848642 R KEGG: shm:Shewmr7_0696 putative chemotaxis protein CheX; putative chemotaxis protein CheX complement(848178..848642) Shewanella putrefaciens CN-32 5081969 YP_001182290.1 CDS Sputcn32_0761 NC_009438.1 849155 850186 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: she:Shewmr4_3243 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 849155..850186 Shewanella putrefaciens CN-32 5081970 YP_001182291.1 CDS Sputcn32_0762 NC_009438.1 850384 850674 D KEGG: shm:Shewmr7_0747 hypothetical protein; hypothetical protein 850384..850674 Shewanella putrefaciens CN-32 5081971 YP_001182292.1 CDS Sputcn32_0763 NC_009438.1 850828 851028 D KEGG: she:Shewmr4_3241 phage shock protein C, PspC; phage shock protein C, PspC 850828..851028 Shewanella putrefaciens CN-32 5081972 YP_001182293.1 CDS Sputcn32_0764 NC_009438.1 851141 851878 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_0749 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(851141..851878) Shewanella putrefaciens CN-32 5081973 YP_001182294.1 CDS Sputcn32_0765 NC_009438.1 851913 852398 D PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein 851913..852398 Shewanella putrefaciens CN-32 5081974 YP_001182295.1 CDS Sputcn32_0766 NC_009438.1 852410 853378 D KEGG: shm:Shewmr7_0751 hypothetical protein; hypothetical protein 852410..853378 Shewanella putrefaciens CN-32 5081975 YP_001182296.1 CDS Sputcn32_0767 NC_009438.1 853423 854118 D KEGG: she:Shewmr4_3237 hypothetical protein; hypothetical protein 853423..854118 Shewanella putrefaciens CN-32 5081976 YP_001182297.1 CDS tolC NC_009438.1 854186 855493 R trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein complement(854186..855493) Shewanella putrefaciens CN-32 5081977 YP_001182298.1 CDS Sputcn32_0769 NC_009438.1 855737 856339 D PFAM: NUDIX hydrolase; KEGG: son:SO3903 ADP-ribose pyrophosphatase; ADP-ribose diphosphatase 855737..856339 Shewanella putrefaciens CN-32 5081978 YP_001182299.1 CDS Sputcn32_0770 NC_009438.1 856352 856792 D PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein 856352..856792 Shewanella putrefaciens CN-32 5081979 YP_001182300.1 CDS Sputcn32_0771 NC_009438.1 856809 857648 D PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: she:Shewmr4_3233 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein 856809..857648 Shewanella putrefaciens CN-32 5081980 YP_001182301.1 CDS Sputcn32_0772 NC_009438.1 857675 858250 D PFAM: protein of unknown function UPF0227; KEGG: she:Shewmr4_3232 protein of unknown function UPF0227; hypothetical protein 857675..858250 Shewanella putrefaciens CN-32 5081981 YP_001182302.1 CDS Sputcn32_0773 NC_009438.1 858307 860193 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 858307..860193 Shewanella putrefaciens CN-32 5081982 YP_001182303.1 CDS Sputcn32_0774 NC_009438.1 860246 861421 D KEGG: shm:Shewmr7_0759 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 860246..861421 Shewanella putrefaciens CN-32 5081983 YP_001182304.1 CDS Sputcn32_0775 NC_009438.1 861414 863690 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 861414..863690 Shewanella putrefaciens CN-32 5081984 YP_001182305.1 CDS Sputcn32_0776 NC_009438.1 864127 865707 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(864127..865707) Shewanella putrefaciens CN-32 5081986 YP_001182306.1 CDS Sputcn32_0777 NC_009438.1 866011 866142 D KEGG: sfr:Sfri_0507 hypothetical protein; hypothetical protein 866011..866142 Shewanella putrefaciens CN-32 5081987 YP_001182307.1 CDS Sputcn32_0778 NC_009438.1 866259 866870 R KEGG: she:Shewmr4_3224 hypothetical protein; hypothetical protein complement(866259..866870) Shewanella putrefaciens CN-32 5081988 YP_001182308.1 CDS Sputcn32_0779 NC_009438.1 867040 868686 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 867040..868686 Shewanella putrefaciens CN-32 5081989 YP_001182309.1 CDS Sputcn32_0780 NC_009438.1 868704 869516 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: she:Shewmr4_3226 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(868704..869516) Shewanella putrefaciens CN-32 5081990 YP_001182310.1 CDS Sputcn32_0781 NC_009438.1 870454 871515 D PFAM: porin, Gram-negative type; KEGG: shm:Shewmr7_0761 porin, gram-negative type; porin 870454..871515 Shewanella putrefaciens CN-32 5081991 YP_001182311.1 CDS Sputcn32_0782 NC_009438.1 871620 872822 R TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: shm:Shewmr7_0771 putative iron-sulfur cluster binding protein; putative iron-sulfur cluster binding protein complement(871620..872822) Shewanella putrefaciens CN-32 5081992 YP_001182312.1 CDS Sputcn32_0783 NC_009438.1 873052 873486 D KEGG: son:SO3856 hypothetical protein; hypothetical protein 873052..873486 Shewanella putrefaciens CN-32 5081993 YP_001182313.1 CDS Sputcn32_0784 NC_009438.1 873652 875340 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(873652..875340) Shewanella putrefaciens CN-32 5081994 YP_001182314.1 CDS Sputcn32_0785 NC_009438.1 875609 876079 R PFAM: protein of unknown function DUF1456; KEGG: shm:Shewmr7_0779 protein of unknown function DUF1456; hypothetical protein complement(875609..876079) Shewanella putrefaciens CN-32 5081995 YP_001182315.1 CDS Sputcn32_0786 NC_009438.1 876223 877497 R KEGG: she:Shewmr4_3186 putative manganese transporter; putative manganese transporter complement(876223..877497) Shewanella putrefaciens CN-32 5081996 YP_001182316.1 CDS Sputcn32_0787 NC_009438.1 877556 878086 R PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein complement(877556..878086) Shewanella putrefaciens CN-32 5081997 YP_001182317.1 CDS Sputcn32_0788 NC_009438.1 878593 879093 R KEGG: shm:Shewmr7_0784 hypothetical protein; hypothetical protein complement(878593..879093) Shewanella putrefaciens CN-32 5081998 YP_001182318.1 CDS Sputcn32_0789 NC_009438.1 879124 879531 R KEGG: she:Shewmr4_3181 hypothetical protein; hypothetical protein complement(879124..879531) Shewanella putrefaciens CN-32 5081999 YP_001182319.1 CDS Sputcn32_0790 NC_009438.1 879687 880472 R KEGG: she:Shewmr4_3180 hypothetical protein; hypothetical protein complement(879687..880472) Shewanella putrefaciens CN-32 5082000 YP_001182320.1 CDS Sputcn32_0791 NC_009438.1 880692 882776 R PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: she:Shewmr4_3179 endothelin-converting enzyme 1; endothelin-converting protein 1 complement(880692..882776) Shewanella putrefaciens CN-32 5082001 YP_001182321.1 CDS Sputcn32_0792 NC_009438.1 883169 883858 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0788 pseudouridine synthase, Rsu; pseudouridine synthase 883169..883858 Shewanella putrefaciens CN-32 5082002 YP_001182322.1 CDS Sputcn32_0793 NC_009438.1 883933 884889 R KEGG: she:Shewmr4_3177 hypothetical protein; hypothetical protein complement(883933..884889) Shewanella putrefaciens CN-32 5082003 YP_001182323.1 CDS Sputcn32_0794 NC_009438.1 884886 885461 R KEGG: she:Shewmr4_3176 hypothetical protein; hypothetical protein complement(884886..885461) Shewanella putrefaciens CN-32 5082004 YP_001182324.1 CDS Sputcn32_0795 NC_009438.1 885461 885994 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(885461..885994) Shewanella putrefaciens CN-32 5082005 YP_001182325.1 CDS Sputcn32_0796 NC_009438.1 886409 888271 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_0792 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 886409..888271 Shewanella putrefaciens CN-32 5082006 YP_001182326.1 CDS Sputcn32_0797 NC_009438.1 888334 889281 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(888334..889281) Shewanella putrefaciens CN-32 5082007 YP_001182327.1 CDS ipk NC_009438.1 889392 890246 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(889392..890246) Shewanella putrefaciens CN-32 5082008 YP_001182328.1 CDS Sputcn32_0799 NC_009438.1 890248 890892 R PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB complement(890248..890892) Shewanella putrefaciens CN-32 5082009 YP_001182329.1 CDS hemA NC_009438.1 891145 892395 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 891145..892395 Shewanella putrefaciens CN-32 5082010 YP_001182330.1 CDS prfA NC_009438.1 892410 893501 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 892410..893501 Shewanella putrefaciens CN-32 5082011 YP_001182331.1 CDS Sputcn32_0802 NC_009438.1 893504 894352 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: she:Shewmr4_3168 modification methylase, HemK family; HemK family modification methylase 893504..894352 Shewanella putrefaciens CN-32 5082012 YP_001182332.1 CDS Sputcn32_0803 NC_009438.1 894746 895189 D KEGG: cgb:cg1190 hypothetical protein; hypothetical protein 894746..895189 Shewanella putrefaciens CN-32 5082013 YP_001182333.1 CDS Sputcn32_0804 NC_009438.1 895244 895573 D hypothetical protein 895244..895573 Shewanella putrefaciens CN-32 5082014 YP_001182334.1 CDS Sputcn32_0805 NC_009438.1 895827 896246 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_0799 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(895827..896246) Shewanella putrefaciens CN-32 5082015 YP_001182335.1 CDS Sputcn32_0806 NC_009438.1 896360 896755 D PFAM: Invasion gene expression up-regulator, SirB; KEGG: shm:Shewmr7_0800 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB 896360..896755 Shewanella putrefaciens CN-32 5082016 YP_001182336.1 CDS Sputcn32_0807 NC_009438.1 896755 897543 D KEGG: shm:Shewmr7_0801 hypothetical protein; hypothetical protein 896755..897543 Shewanella putrefaciens CN-32 5082017 YP_001182337.1 CDS Sputcn32_0808 NC_009438.1 897705 898952 D PFAM: protein of unknown function DUF819; KEGG: shm:Shewmr7_0802 protein of unknown function DUF819; hypothetical protein 897705..898952 Shewanella putrefaciens CN-32 5081919 YP_001182338.1 CDS Sputcn32_0809 NC_009438.1 899008 899856 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 899008..899856 Shewanella putrefaciens CN-32 5081920 YP_001182339.1 CDS Sputcn32_0810 NC_009438.1 900070 901839 R TIGRFAM: flavocytochrome c; PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_2586 flavocytochrome c; flavocytochrome c complement(900070..901839) Shewanella putrefaciens CN-32 5081921 YP_001182340.1 CDS Sputcn32_0811 NC_009438.1 902064 903092 D KEGG: she:Shewmr4_3227 outer membrane porin, putative; outer membrane porin 902064..903092 Shewanella putrefaciens CN-32 5081922 YP_001182341.1 CDS Sputcn32_0812 NC_009438.1 903216 904112 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2588 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 903216..904112 Shewanella putrefaciens CN-32 5081923 YP_001182342.1 CDS Sputcn32_0813 NC_009438.1 904135 905361 D PFAM: protein of unknown function DUF819; KEGG: sfr:Sfri_2589 protein of unknown function DUF819; hypothetical protein 904135..905361 Shewanella putrefaciens CN-32 5081924 YP_001182343.1 CDS Sputcn32_0814 NC_009438.1 905477 907021 D PFAM: EAL domain protein; KEGG: son:SO3821 rtn protein; EAL domain-containing protein 905477..907021 Shewanella putrefaciens CN-32 5081925 YP_001182344.1 CDS Sputcn32_0815 NC_009438.1 907056 907466 R PFAM: nitrogen regulatory protein P-II; KEGG: shm:Shewmr7_0808 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(907056..907466) Shewanella putrefaciens CN-32 5081926 YP_001182345.1 CDS Sputcn32_0816 NC_009438.1 907578 908540 R KEGG: she:Shewmr4_3158 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(907578..908540) Shewanella putrefaciens CN-32 5081927 YP_001182346.1 CDS Sputcn32_0817 NC_009438.1 908585 908944 R PFAM: VanZ family protein; KEGG: she:Shewmr4_3157 VanZ family protein; VanZ family protein complement(908585..908944) Shewanella putrefaciens CN-32 5081928 YP_001182347.1 CDS Sputcn32_0818 NC_009438.1 909108 909593 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 909108..909593 Shewanella putrefaciens CN-32 5081929 YP_001182348.1 CDS Sputcn32_0819 NC_009438.1 909701 911116 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator superfamily transporter complement(909701..911116) Shewanella putrefaciens CN-32 5081930 YP_001182349.1 CDS Sputcn32_0820 NC_009438.1 911309 911629 R KEGG: shm:Shewmr7_0813 hypothetical protein; hypothetical protein complement(911309..911629) Shewanella putrefaciens CN-32 5081931 YP_001182350.1 CDS Sputcn32_0821 NC_009438.1 911697 912281 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_0814 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(911697..912281) Shewanella putrefaciens CN-32 5081932 YP_001182351.1 CDS Sputcn32_0822 NC_009438.1 912312 912878 R PFAM: Uncharacterized lipoprotein; KEGG: shm:Shewmr7_0815 uncharacterized lipoprotein; hypothetical protein complement(912312..912878) Shewanella putrefaciens CN-32 5081933 YP_001182352.1 CDS Sputcn32_0823 NC_009438.1 913296 913871 D PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: son:SO3810 OmpA-like transmembrane domain protein; OmpA domain-containing protein 913296..913871 Shewanella putrefaciens CN-32 5081934 YP_001182353.1 CDS Sputcn32_0824 NC_009438.1 914094 915125 D KEGG: she:Shewmr4_3150 hypothetical protein; hypothetical protein 914094..915125 Shewanella putrefaciens CN-32 5081935 YP_001182354.1 CDS Sputcn32_0825 NC_009438.1 915260 916123 D KEGG: shm:Shewmr7_0818 sterol desaturase family protein; sterol desaturase family protein 915260..916123 Shewanella putrefaciens CN-32 5081936 YP_001182355.1 CDS Sputcn32_0826 NC_009438.1 916272 916907 D KEGG: she:Shewmr4_3148 hypothetical protein; hypothetical protein 916272..916907 Shewanella putrefaciens CN-32 5081937 YP_001182356.1 CDS Sputcn32_0827 NC_009438.1 917076 918470 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: shm:Shewmr7_0820 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 917076..918470 Shewanella putrefaciens CN-32 5081938 YP_001182357.1 CDS Sputcn32_0828 NC_009438.1 918472 919131 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: shm:Shewmr7_0821 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 918472..919131 Shewanella putrefaciens CN-32 5081939 YP_001182358.1 CDS Sputcn32_0829 NC_009438.1 919139 919669 D KEGG: shm:Shewmr7_0822 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 919139..919669 Shewanella putrefaciens CN-32 5081940 YP_001182359.1 CDS Sputcn32_0830 NC_009438.1 919807 920745 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein 919807..920745 Shewanella putrefaciens CN-32 5081941 YP_001182360.1 CDS Sputcn32_0831 NC_009438.1 920742 921512 D PFAM: ABC-2 type transporter; KEGG: she:Shewmr4_3143 ABC-2 type transporter; ABC transporter 920742..921512 Shewanella putrefaciens CN-32 5081942 YP_001182361.1 CDS Sputcn32_0832 NC_009438.1 921581 925459 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO1915 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(921581..925459) Shewanella putrefaciens CN-32 5081943 YP_001182362.1 CDS Sputcn32_0833 NC_009438.1 925659 926153 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(925659..926153) Shewanella putrefaciens CN-32 5081944 YP_001182363.1 CDS Sputcn32_0834 NC_009438.1 926216 926896 R PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridylate synthase complement(926216..926896) Shewanella putrefaciens CN-32 5081945 YP_001182364.1 CDS Sputcn32_0835 NC_009438.1 927099 929015 D PFAM: peptidase U32; KEGG: shm:Shewmr7_0828 peptidase U32; peptidase U32 927099..929015 Shewanella putrefaciens CN-32 5081946 YP_001182365.1 CDS Sputcn32_0836 NC_009438.1 929084 931324 R KEGG: shm:Shewmr7_0831 hypothetical protein; hypothetical protein complement(929084..931324) Shewanella putrefaciens CN-32 5081947 YP_001182366.1 CDS Sputcn32_0837 NC_009438.1 931476 931793 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_0832 cupin 2, conserved barrel domain protein; cupin 931476..931793 Shewanella putrefaciens CN-32 5081948 YP_001182367.1 CDS Sputcn32_0838 NC_009438.1 931803 932969 R PFAM: peptidase M19, renal dipeptidase; KEGG: shm:Shewmr7_0834 twin-arginine translocation pathway signal; peptidase M19 complement(931803..932969) Shewanella putrefaciens CN-32 5081949 YP_001182368.1 CDS Sputcn32_0839 NC_009438.1 933088 933534 R PFAM: Fe-S metabolism associated SufE; KEGG: she:Shewmr4_3132 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(933088..933534) Shewanella putrefaciens CN-32 5081950 YP_001182369.1 CDS Sputcn32_0840 NC_009438.1 933609 934922 R TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: son:SO3789 aminotransferase, class V; SufS subfamily cysteine desulfurase complement(933609..934922) Shewanella putrefaciens CN-32 5081951 YP_001182370.1 CDS Sputcn32_0842 NC_009438.1 935404 936249 D PFAM: MltA-interacting MipA family protein; KEGG: sfr:Sfri_3064 MltA-interacting MipA family protein; MltA-interacting MipA family protein 935404..936249 Shewanella putrefaciens CN-32 5081953 YP_001182371.1 CDS Sputcn32_0843 NC_009438.1 936259 936648 D KEGG: sfr:Sfri_3063 hypothetical protein; hypothetical protein 936259..936648 Shewanella putrefaciens CN-32 5081954 YP_001182372.1 CDS Sputcn32_0844 NC_009438.1 936650 937345 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdn:Sden_0557 response regulator receiver; two component transcriptional regulator 936650..937345 Shewanella putrefaciens CN-32 5081955 YP_001182373.1 CDS Sputcn32_0845 NC_009438.1 937351 938646 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: sdn:Sden_0558 ATP-binding region, ATPase-like protein; integral membrane sensor signal transduction histidine kinase 937351..938646 Shewanella putrefaciens CN-32 5081956 YP_001182374.1 CDS Sputcn32_0846 NC_009438.1 938762 939220 R KEGG: sfr:Sfri_3059 hypothetical protein; hypothetical protein complement(938762..939220) Shewanella putrefaciens CN-32 5081957 YP_001182375.1 CDS Sputcn32_0847 NC_009438.1 939242 940015 R PFAM: MltA-interacting MipA family protein; KEGG: sfr:Sfri_3058 MltA-interacting MipA family protein; MltA-interacting MipA family protein complement(939242..940015) Shewanella putrefaciens CN-32 5081958 YP_001182376.1 CDS Sputcn32_0848 NC_009438.1 940249 941289 R PFAM: aldo/keto reductase; KEGG: shm:Shewmr7_3273 aldo/keto reductase; aldo/keto reductase complement(940249..941289) Shewanella putrefaciens CN-32 5081959 YP_001182377.1 CDS Sputcn32_0849 NC_009438.1 941744 943114 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 941744..943114 Shewanella putrefaciens CN-32 5081960 YP_001182378.1 CDS Sputcn32_0850 NC_009438.1 943114 944346 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 943114..944346 Shewanella putrefaciens CN-32 5081961 YP_001182379.1 CDS Sputcn32_0851 NC_009438.1 944336 945130 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 944336..945130 Shewanella putrefaciens CN-32 5081962 YP_001182380.1 CDS Sputcn32_0852 NC_009438.1 945127 945747 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 945127..945747 Shewanella putrefaciens CN-32 5081963 YP_001182381.1 CDS Sputcn32_0853 NC_009438.1 945757 946365 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 945757..946365 Shewanella putrefaciens CN-32 5081964 YP_001182382.1 CDS Sputcn32_0854 NC_009438.1 946443 947660 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 946443..947660 Shewanella putrefaciens CN-32 5081965 YP_001182383.1 CDS Sputcn32_0855 NC_009438.1 947779 948117 R PFAM: Ankyrin; KEGG: son:SO0908 hypothetical protein; ankyrin complement(947779..948117) Shewanella putrefaciens CN-32 5081966 YP_001182384.1 CDS Sputcn32_0856 NC_009438.1 948535 949734 D PFAM: beta-lactamase; KEGG: son:SO0914 hypothetical protein; beta-lactamase 948535..949734 Shewanella putrefaciens CN-32 5081967 YP_001182385.1 CDS Sputcn32_0857 NC_009438.1 949872 950309 R hypothetical protein complement(949872..950309) Shewanella putrefaciens CN-32 5081968 YP_001182386.1 CDS Sputcn32_0858 NC_009438.1 950728 951690 R PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: shm:Shewmr7_3265 transcriptional regulator, MarR family with acetyltransferase activity; MarR family transcriptional regulator complement(950728..951690) Shewanella putrefaciens CN-32 5081869 YP_001182387.1 CDS Sputcn32_0859 NC_009438.1 951813 952367 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(951813..952367) Shewanella putrefaciens CN-32 5081870 YP_001182388.1 CDS Sputcn32_0860 NC_009438.1 952626 955190 D PFAM: peptidase S45, penicillin amidase; KEGG: shm:Shewmr7_3263 peptidase S45, penicillin amidase; peptidase S45, penicillin amidase 952626..955190 Shewanella putrefaciens CN-32 5081871 YP_001182389.1 CDS Sputcn32_0861 NC_009438.1 955657 956952 D PFAM: aromatic amino acid permease; KEGG: son:SO0919 serine transporter, putative; aromatic amino acid permease 955657..956952 Shewanella putrefaciens CN-32 5081872 YP_001182390.1 CDS Sputcn32_0862 NC_009438.1 957046 957489 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_3261 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(957046..957489) Shewanella putrefaciens CN-32 5081873 YP_001182391.1 CDS Sputcn32_0863 NC_009438.1 957829 959160 D PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3259 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 957829..959160 Shewanella putrefaciens CN-32 5081874 YP_001182392.1 CDS Sputcn32_0864 NC_009438.1 959260 959676 R PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: shm:Shewmr7_3258 protein of unknown function DUF306, MetA and HslJ; hypothetical protein complement(959260..959676) Shewanella putrefaciens CN-32 5081875 YP_001182393.1 CDS Sputcn32_0865 NC_009438.1 959748 959972 D KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein 959748..959972 Shewanella putrefaciens CN-32 5081876 YP_001182394.1 CDS Sputcn32_0866 NC_009438.1 960057 960629 D KEGG: shm:Shewmr7_3255 acetyltransferase, GNAT family; acetyltransferase 960057..960629 Shewanella putrefaciens CN-32 5081877 YP_001182395.1 CDS Sputcn32_0867 NC_009438.1 960696 961046 D KEGG: shm:Shewmr7_3253 hypothetical protein; hypothetical protein 960696..961046 Shewanella putrefaciens CN-32 5081878 YP_001182396.1 CDS Sputcn32_0868 NC_009438.1 961201 962235 R PFAM: protein of unknown function DUF1568; KEGG: shm:Shewmr7_1178 protein of unknown function DUF1568; hypothetical protein complement(961201..962235) Shewanella putrefaciens CN-32 5081879 YP_001182397.1 CDS Sputcn32_0869 NC_009438.1 962609 963199 D KEGG: bfr:BF2853 hypothetical protein; hypothetical protein 962609..963199 Shewanella putrefaciens CN-32 5081880 YP_001182398.1 CDS Sputcn32_0870 NC_009438.1 964410 964895 R KEGG: shm:Shewmr7_3252 hypothetical protein; hypothetical protein complement(964410..964895) Shewanella putrefaciens CN-32 5081881 YP_001182399.1 CDS Sputcn32_0871 NC_009438.1 965027 966178 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(965027..966178) Shewanella putrefaciens CN-32 5081882 YP_001182400.1 CDS Sputcn32_0872 NC_009438.1 966657 968651 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 966657..968651 Shewanella putrefaciens CN-32 5081883 YP_001182401.1 CDS Sputcn32_0873 NC_009438.1 968768 969784 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 968768..969784 Shewanella putrefaciens CN-32 5081884 YP_001182402.1 CDS pgk NC_009438.1 969912 971087 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 969912..971087 Shewanella putrefaciens CN-32 5081885 YP_001182403.1 CDS Sputcn32_0875 NC_009438.1 971301 972368 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 971301..972368 Shewanella putrefaciens CN-32 5081886 YP_001182404.1 CDS Sputcn32_0876 NC_009438.1 972565 973302 D PFAM: protein of unknown function DUF481; KEGG: shm:Shewmr7_3246 protein of unknown function DUF481; hypothetical protein 972565..973302 Shewanella putrefaciens CN-32 5081887 YP_001182405.1 CDS Sputcn32_0877 NC_009438.1 973516 974952 D KEGG: she:Shewmr4_0778 Na+/H+ antiporter; Na+/H+ antiporter 973516..974952 Shewanella putrefaciens CN-32 5081888 YP_001182406.1 CDS Sputcn32_0878 NC_009438.1 975036 975566 R KEGG: she:Shewmr4_0781 hypothetical protein; hypothetical protein complement(975036..975566) Shewanella putrefaciens CN-32 5081889 YP_001182407.1 CDS Sputcn32_0879 NC_009438.1 975577 976398 R KEGG: shm:Shewmr7_3241 cytochrome c, putative; cytochrome c complement(975577..976398) Shewanella putrefaciens CN-32 5081890 YP_001182408.1 CDS Sputcn32_0880 NC_009438.1 976845 977588 D PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; transcriptional regulator CadC 976845..977588 Shewanella putrefaciens CN-32 5081891 YP_001182409.1 CDS Sputcn32_0881 NC_009438.1 977581 978111 D KEGG: she:Shewmr4_0784 hypothetical protein; hypothetical protein 977581..978111 Shewanella putrefaciens CN-32 5081892 YP_001182410.1 CDS Sputcn32_0882 NC_009438.1 978207 979610 D KEGG: shm:Shewmr7_3238 hypothetical protein; hypothetical protein 978207..979610 Shewanella putrefaciens CN-32 5081893 YP_001182411.1 CDS Sputcn32_0883 NC_009438.1 979591 981828 R KEGG: she:Shewmr4_0786 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein complement(979591..981828) Shewanella putrefaciens CN-32 5081894 YP_001182412.1 CDS Sputcn32_0884 NC_009438.1 981997 982704 R PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein complement(981997..982704) Shewanella putrefaciens CN-32 5081895 YP_001182413.1 CDS Sputcn32_0885 NC_009438.1 982880 986071 R PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3235 acriflavin resistance protein; acriflavin resistance protein complement(982880..986071) Shewanella putrefaciens CN-32 5081896 YP_001182414.1 CDS Sputcn32_0886 NC_009438.1 986071 987282 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3234 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(986071..987282) Shewanella putrefaciens CN-32 5081897 YP_001182415.1 CDS Sputcn32_0887 NC_009438.1 987648 988907 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(987648..988907) Shewanella putrefaciens CN-32 5081898 YP_001182416.1 CDS Sputcn32_0888 NC_009438.1 989021 989737 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_0793 methyltransferase small; type 12 methyltransferase complement(989021..989737) Shewanella putrefaciens CN-32 5081899 YP_001182417.1 CDS Sputcn32_0889 NC_009438.1 990269 991672 D PFAM: branched-chain amino acid transport system II carrier protein; KEGG: she:Shewmr4_0794 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 990269..991672 Shewanella putrefaciens CN-32 5081900 YP_001182418.1 CDS Sputcn32_0890 NC_009438.1 991762 992664 D TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: shm:Shewmr7_3228 tyrosine recombinase XerD; tyrosine recombinase XerD 991762..992664 Shewanella putrefaciens CN-32 5081901 YP_001182419.1 CDS Sputcn32_0891 NC_009438.1 992798 993523 D KEGG: shm:Shewmr7_3227 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 992798..993523 Shewanella putrefaciens CN-32 5081902 YP_001182420.1 CDS Sputcn32_0892 NC_009438.1 993587 995341 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: shm:Shewmr7_3226 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 993587..995341 Shewanella putrefaciens CN-32 5081903 YP_001182421.1 CDS Sputcn32_0893 NC_009438.1 995365 995694 D KEGG: son:SO0953 hypothetical protein; hypothetical protein 995365..995694 Shewanella putrefaciens CN-32 5081904 YP_001182422.1 CDS Sputcn32_0894 NC_009438.1 995730 996158 D PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0799 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 995730..996158 Shewanella putrefaciens CN-32 5081905 YP_001182423.1 CDS Sputcn32_0895 NC_009438.1 996227 997798 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin; KEGG: she:Shewmr4_0800 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(996227..997798) Shewanella putrefaciens CN-32 5081906 YP_001182424.1 CDS Sputcn32_0896 NC_009438.1 997909 998478 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase complement(997909..998478) Shewanella putrefaciens CN-32 5081907 YP_001182425.1 CDS Sputcn32_0897 NC_009438.1 998854 1000410 R PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_3221 leucyl aminopeptidase; leucyl aminopeptidase complement(998854..1000410) Shewanella putrefaciens CN-32 5081908 YP_001182426.1 CDS Sputcn32_0898 NC_009438.1 1000500 1001243 R PFAM: Spermine synthase; KEGG: shm:Shewmr7_3220 spermine synthase; spermine synthase complement(1000500..1001243) Shewanella putrefaciens CN-32 5081909 YP_001182427.1 CDS Sputcn32_0899 NC_009438.1 1001347 1001892 D KEGG: shm:Shewmr7_3219 hypothetical protein; hypothetical protein 1001347..1001892 Shewanella putrefaciens CN-32 5081910 YP_001182428.1 CDS Sputcn32_0900 NC_009438.1 1001909 1002352 D KEGG: psb:Psyr_4989 hypothetical protein; hypothetical protein 1001909..1002352 Shewanella putrefaciens CN-32 5081911 YP_001182429.1 CDS Sputcn32_0901 NC_009438.1 1002444 1002905 D hypothetical protein 1002444..1002905 Shewanella putrefaciens CN-32 5081912 YP_001182430.1 CDS Sputcn32_0902 NC_009438.1 1003044 1003331 R hypothetical protein complement(1003044..1003331) Shewanella putrefaciens CN-32 5081913 YP_001182431.1 CDS Sputcn32_0903 NC_009438.1 1003382 1004119 R PFAM: dienelactone hydrolase; KEGG: she:Shewmr4_0806 dienelactone hydrolase; dienelactone hydrolase complement(1003382..1004119) Shewanella putrefaciens CN-32 5081914 YP_001182432.1 CDS Sputcn32_0904 NC_009438.1 1004188 1005177 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3216 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase complement(1004188..1005177) Shewanella putrefaciens CN-32 5081915 YP_001182433.1 CDS Sputcn32_0905 NC_009438.1 1005433 1007226 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c complement(1005433..1007226) Shewanella putrefaciens CN-32 5081916 YP_001182434.1 CDS Sputcn32_0906 NC_009438.1 1007724 1008134 D KEGG: she:Shewmr4_0809 hypothetical protein; hypothetical protein 1007724..1008134 Shewanella putrefaciens CN-32 5081917 YP_001182435.1 CDS Sputcn32_0907 NC_009438.1 1008134 1008664 D PFAM: Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein; type 12 methyltransferase 1008134..1008664 Shewanella putrefaciens CN-32 5081918 YP_001182436.1 CDS Sputcn32_0908 NC_009438.1 1008725 1009015 D KEGG: son:SO0973 hypothetical protein; hypothetical protein 1008725..1009015 Shewanella putrefaciens CN-32 5081820 YP_001182437.1 CDS Sputcn32_0909 NC_009438.1 1009072 1010643 D PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein; rhomboid family protein 1009072..1010643 Shewanella putrefaciens CN-32 5081821 YP_001182438.1 CDS Sputcn32_0910 NC_009438.1 1010682 1011779 R PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO1001 calcium/proton antiporter; sodium/calcium exchanger membrane region complement(1010682..1011779) Shewanella putrefaciens CN-32 5081822 YP_001182439.1 CDS Sputcn32_0911 NC_009438.1 1012008 1012325 D hypothetical protein 1012008..1012325 Shewanella putrefaciens CN-32 5081823 YP_001182440.1 CDS Sputcn32_0912 NC_009438.1 1012474 1014216 R KEGG: son:SO1003 hypothetical protein; hypothetical protein complement(1012474..1014216) Shewanella putrefaciens CN-32 5081824 YP_001182441.1 CDS Sputcn32_0913 NC_009438.1 1014226 1016499 R KEGG: son:SO1004 hypothetical protein; hypothetical protein complement(1014226..1016499) Shewanella putrefaciens CN-32 5081825 YP_001182442.1 CDS Sputcn32_0914 NC_009438.1 1016700 1017254 R PFAM: protein of unknown function UPF0016; KEGG: she:Shewmr4_3028 protein of unknown function UPF0016; hypothetical protein complement(1016700..1017254) Shewanella putrefaciens CN-32 5081826 YP_001182443.1 CDS Sputcn32_0915 NC_009438.1 1017493 1017762 D hypothetical protein 1017493..1017762 Shewanella putrefaciens CN-32 5081827 YP_001182444.1 CDS Sputcn32_0916 NC_009438.1 1017958 1019145 D PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: shm:Shewmr7_0948 aromatic amino acid permease; aromatic amino acid permease 1017958..1019145 Shewanella putrefaciens CN-32 5081828 YP_001182445.1 CDS Sputcn32_0917 NC_009438.1 1019408 1021564 D KEGG: shm:Shewmr7_0949 hypothetical protein; hypothetical protein 1019408..1021564 Shewanella putrefaciens CN-32 5081829 YP_001182446.1 CDS Sputcn32_0918 NC_009438.1 1022344 1022547 R KEGG: son:SO4411 hypothetical protein; hypothetical protein complement(1022344..1022547) Shewanella putrefaciens CN-32 5081830 YP_001182447.1 CDS Sputcn32_0919 NC_009438.1 1023125 1023823 R KEGG: son:SOA0150 hypothetical protein; hypothetical protein complement(1023125..1023823) Shewanella putrefaciens CN-32 5081831 YP_001182448.1 CDS Sputcn32_0920 NC_009438.1 1024314 1024775 R hypothetical protein complement(1024314..1024775) Shewanella putrefaciens CN-32 5081832 YP_001182449.1 CDS Sputcn32_0921 NC_009438.1 1025306 1025560 R KEGG: son:SO0729 hypothetical protein; hypothetical protein complement(1025306..1025560) Shewanella putrefaciens CN-32 5081833 YP_001182450.1 CDS Sputcn32_0922 NC_009438.1 1025836 1026564 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_0952 pseudouridine synthase, Rsu; pseudouridine synthase complement(1025836..1026564) Shewanella putrefaciens CN-32 5081834 YP_001182451.1 CDS Sputcn32_0923 NC_009438.1 1026573 1027271 R KEGG: she:Shewmr4_0918 hypothetical protein; hypothetical protein complement(1026573..1027271) Shewanella putrefaciens CN-32 5081835 YP_001182452.1 CDS Sputcn32_0924 NC_009438.1 1027449 1028786 R PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_0954 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(1027449..1028786) Shewanella putrefaciens CN-32 5081836 YP_001182453.1 CDS Sputcn32_0925 NC_009438.1 1029132 1030763 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0924 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1029132..1030763) Shewanella putrefaciens CN-32 5081837 YP_001182454.1 CDS Sputcn32_0926 NC_009438.1 1030921 1031808 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein; hypothetical protein complement(1030921..1031808) Shewanella putrefaciens CN-32 5081838 YP_001182455.1 CDS Sputcn32_0927 NC_009438.1 1031991 1032770 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: shm:Shewmr7_0961 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 1031991..1032770 Shewanella putrefaciens CN-32 5081839 YP_001182456.1 CDS Sputcn32_0928 NC_009438.1 1033389 1033796 R KEGG: son:SO1094 hypothetical transcription elongation factor; GreA/GreB family elongation factor complement(1033389..1033796) Shewanella putrefaciens CN-32 5081840 YP_001182457.1 CDS Sputcn32_0929 NC_009438.1 1034498 1035505 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: shm:Shewmr7_0963 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II complement(1034498..1035505) Shewanella putrefaciens CN-32 5081841 YP_001182458.1 CDS Sputcn32_0930 NC_009438.1 1035566 1036900 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_0964 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(1035566..1036900) Shewanella putrefaciens CN-32 5081842 YP_001182459.1 CDS Sputcn32_0931 NC_009438.1 1037059 1038498 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: shm:Shewmr7_0965 transcriptional regulator, GntR family; GntR family transcriptional regulator 1037059..1038498 Shewanella putrefaciens CN-32 5081843 YP_001182460.1 CDS Sputcn32_0932 NC_009438.1 1038622 1039920 D KEGG: shm:Shewmr7_0966 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 1038622..1039920 Shewanella putrefaciens CN-32 5081844 YP_001182461.1 CDS Sputcn32_0933 NC_009438.1 1040041 1043232 R KEGG: son:SO1096 hypothetical protein; hypothetical protein complement(1040041..1043232) Shewanella putrefaciens CN-32 5081845 YP_001182462.1 CDS Sputcn32_0934 NC_009438.1 1043437 1044645 R PFAM: methyltransferase small; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; rRNA (guanine-N(2)-)-methyltransferase complement(1043437..1044645) Shewanella putrefaciens CN-32 5081846 YP_001182463.1 CDS Sputcn32_0935 NC_009438.1 1044657 1045271 D PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_0969 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 1044657..1045271 Shewanella putrefaciens CN-32 5081847 YP_001182464.1 CDS Sputcn32_0936 NC_009438.1 1045397 1045717 D PFAM: BolA family protein; KEGG: shm:Shewmr7_0970 BolA family protein; BolA family protein 1045397..1045717 Shewanella putrefaciens CN-32 5081848 YP_001182465.1 CDS Sputcn32_0937 NC_009438.1 1045916 1047025 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_0971 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter- DctP subunit 1045916..1047025 Shewanella putrefaciens CN-32 5081849 YP_001182466.1 CDS Sputcn32_0938 NC_009438.1 1047152 1047661 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1047152..1047661 Shewanella putrefaciens CN-32 5081850 YP_001182467.1 CDS Sputcn32_0939 NC_009438.1 1047827 1049878 D PFAM: TonB-dependent receptor; KEGG: she:Shewmr4_0935 TonB-dependent receptor; TonB-dependent receptor 1047827..1049878 Shewanella putrefaciens CN-32 5081851 YP_001182468.1 CDS Sputcn32_0940 NC_009438.1 1050280 1051614 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1050280..1051614 Shewanella putrefaciens CN-32 5081852 YP_001182469.1 CDS Sputcn32_0941 NC_009438.1 1051614 1052813 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1051614..1052813 Shewanella putrefaciens CN-32 5081853 YP_001182470.1 CDS Sputcn32_0942 NC_009438.1 1052806 1053594 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1052806..1053594 Shewanella putrefaciens CN-32 5081854 YP_001182471.1 CDS Sputcn32_0943 NC_009438.1 1053594 1054226 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1053594..1054226 Shewanella putrefaciens CN-32 5081855 YP_001182472.1 CDS Sputcn32_0944 NC_009438.1 1054232 1054840 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1054232..1054840 Shewanella putrefaciens CN-32 5081856 YP_001182473.1 CDS Sputcn32_0945 NC_009438.1 1054887 1056143 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1054887..1056143 Shewanella putrefaciens CN-32 5081857 YP_001182474.1 CDS Sputcn32_0946 NC_009438.1 1056243 1057286 D PFAM: ApbE family lipoprotein; KEGG: she:Shewmr4_0942 ApbE family lipoprotein; ApbE family lipoprotein 1056243..1057286 Shewanella putrefaciens CN-32 5081858 YP_001182475.1 CDS Sputcn32_0947 NC_009438.1 1057298 1057522 D PFAM: protein of unknown function DUF539; KEGG: shm:Shewmr7_0981 protein of unknown function DUF539; hypothetical protein 1057298..1057522 Shewanella putrefaciens CN-32 5081859 YP_001182476.1 CDS Sputcn32_0948 NC_009438.1 1057767 1058240 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_0982 bacterioferritin; bacterioferritin 1057767..1058240 Shewanella putrefaciens CN-32 5081860 YP_001182477.1 CDS Sputcn32_0949 NC_009438.1 1058250 1058717 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 1058250..1058717 Shewanella putrefaciens CN-32 5081861 YP_001182478.1 CDS Sputcn32_0950 NC_009438.1 1059013 1061016 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0946 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1059013..1061016 Shewanella putrefaciens CN-32 5081862 YP_001182479.1 CDS Sputcn32_0951 NC_009438.1 1061087 1062226 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1061087..1062226 Shewanella putrefaciens CN-32 5081863 YP_001182480.1 CDS Sputcn32_0952 NC_009438.1 1062269 1063168 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ilo:IL2190 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1062269..1063168) Shewanella putrefaciens CN-32 5081864 YP_001182481.1 CDS Sputcn32_0953 NC_009438.1 1063261 1064193 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2191 predicted permease, DMT superfamily; hypothetical protein 1063261..1064193 Shewanella putrefaciens CN-32 5081865 YP_001182482.1 CDS Sputcn32_0954 NC_009438.1 1064349 1065824 R KEGG: she:Shewmr4_0948 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase complement(1064349..1065824) Shewanella putrefaciens CN-32 5081866 YP_001182483.1 CDS Sputcn32_0955 NC_009438.1 1066029 1067567 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: shm:Shewmr7_0987 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17, leucyl aminopeptidase domain-containing protein 1066029..1067567 Shewanella putrefaciens CN-32 5081867 YP_001182484.1 CDS Sputcn32_0956 NC_009438.1 1067851 1068027 D KEGG: sfr:Sfri_0964 hypothetical protein; hypothetical protein 1067851..1068027 Shewanella putrefaciens CN-32 5081868 YP_001182485.1 CDS Sputcn32_0957 NC_009438.1 1068434 1069411 D PFAM: protein of unknown function DUF1568; KEGG: son:SO1890 hypothetical protein; hypothetical protein 1068434..1069411 Shewanella putrefaciens CN-32 5081770 YP_001182486.1 CDS Sputcn32_0958 NC_009438.1 1069768 1070139 D KEGG: sdn:Sden_1152 hypothetical protein; hypothetical protein 1069768..1070139 Shewanella putrefaciens CN-32 5081771 YP_001182487.1 CDS Sputcn32_0959 NC_009438.1 1070643 1070987 R KEGG: son:SO3676 hypothetical protein; hypothetical protein complement(1070643..1070987) Shewanella putrefaciens CN-32 5081772 YP_001182488.1 CDS hmuV NC_009438.1 1071101 1071925 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(1071101..1071925) Shewanella putrefaciens CN-32 5081773 YP_001182489.1 CDS Sputcn32_0961 NC_009438.1 1071938 1072969 R PFAM: transport system permease protein; KEGG: son:SO3674 hemin ABC transporter, permease protein; transport system permease complement(1071938..1072969) Shewanella putrefaciens CN-32 5081774 YP_001182490.1 CDS Sputcn32_0962 NC_009438.1 1072981 1074027 R PFAM: periplasmic binding protein; KEGG: son:SO3673 hemin ABC transporter, periplasmic hemin-binding protein; periplasmic binding protein complement(1072981..1074027) Shewanella putrefaciens CN-32 5081775 YP_001182491.1 CDS Sputcn32_0963 NC_009438.1 1074113 1074550 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO3672 TonB system transport protein ExbD1; biopolymer transport protein ExbD/TolR complement(1074113..1074550) Shewanella putrefaciens CN-32 5081776 YP_001182492.1 CDS Sputcn32_0964 NC_009438.1 1074547 1075281 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO3671 TonB system transport protein ExbB1; MotA/TolQ/ExbB proton channel complement(1074547..1075281) Shewanella putrefaciens CN-32 5081777 YP_001182493.1 CDS Sputcn32_0965 NC_009438.1 1075344 1076195 R TIGRFAM: TonB family protein; KEGG: son:SO3670 TonB1 protein; TonB family protein complement(1075344..1076195) Shewanella putrefaciens CN-32 5081778 YP_001182494.1 CDS Sputcn32_0966 NC_009438.1 1076428 1078518 D TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3669 heme transport protein; TonB-dependent heme/hemoglobin receptor family protein 1076428..1078518 Shewanella putrefaciens CN-32 5081779 YP_001182495.1 CDS Sputcn32_0967 NC_009438.1 1078545 1079117 D PFAM: protein of unknown function DUF1008; KEGG: son:SO3668 hypothetical protein; hypothetical protein 1078545..1079117 Shewanella putrefaciens CN-32 5081780 YP_001182496.1 CDS Sputcn32_0968 NC_009438.1 1079153 1079710 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: son:SO3667 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1079153..1079710 Shewanella putrefaciens CN-32 5081781 YP_001182497.1 CDS Sputcn32_0969 NC_009438.1 1079902 1081743 D KEGG: she:Shewmr4_0882 lipid A ABC exporter family, fused ATPase and inner membrane subunits; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1079902..1081743 Shewanella putrefaciens CN-32 5081782 YP_001182498.1 CDS Sputcn32_0970 NC_009438.1 1081844 1083445 R PFAM: AMP-dependent synthetase and ligase; KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1081844..1083445) Shewanella putrefaciens CN-32 5081783 YP_001182499.1 CDS Sputcn32_0971 NC_009438.1 1083852 1085315 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_3136 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1083852..1085315) Shewanella putrefaciens CN-32 5081784 YP_001182500.1 CDS Sputcn32_0972 NC_009438.1 1085486 1086952 R KEGG: she:Shewmr4_0887 transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; Fis family transcriptional regulator complement(1085486..1086952) Shewanella putrefaciens CN-32 5081785 YP_001182501.1 CDS Sputcn32_0973 NC_009438.1 1087167 1087766 R KEGG: she:Shewmr4_0888 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein complement(1087167..1087766) Shewanella putrefaciens CN-32 5081786 YP_001182502.1 CDS Sputcn32_0974 NC_009438.1 1087949 1088563 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_3132 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1087949..1088563 Shewanella putrefaciens CN-32 5081787 YP_001182503.1 CDS Sputcn32_0975 NC_009438.1 1088629 1088952 R KEGG: son:SO3656 hypothetical protein; hypothetical protein complement(1088629..1088952) Shewanella putrefaciens CN-32 5081788 YP_001182504.1 CDS Sputcn32_0976 NC_009438.1 1089026 1089568 R KEGG: son:SO3655 pilin, putative; pilin complement(1089026..1089568) Shewanella putrefaciens CN-32 5081789 YP_001182505.1 CDS Sputcn32_0977 NC_009438.1 1089752 1090417 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1089752..1090417 Shewanella putrefaciens CN-32 5081790 YP_001182506.1 CDS Sputcn32_0978 NC_009438.1 1090480 1091475 R PFAM: Polyprenyl synthetase; KEGG: shm:Shewmr7_3126 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase complement(1090480..1091475) Shewanella putrefaciens CN-32 5081791 YP_001182507.1 CDS rplU NC_009438.1 1091727 1092038 D PFAM: ribosomal protein L21; KEGG: sdn:Sden_2927 ribosomal protein L21; 50S ribosomal protein L21 1091727..1092038 Shewanella putrefaciens CN-32 5081792 YP_001182508.1 CDS rpmA NC_009438.1 1092053 1092307 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1092053..1092307 Shewanella putrefaciens CN-32 5081793 YP_001182509.1 CDS obgE NC_009438.1 1092523 1093689 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1092523..1093689 Shewanella putrefaciens CN-32 5081794 YP_001182510.1 CDS Sputcn32_0982 NC_009438.1 1093717 1094478 D PFAM: protein of unknown function DUF1212; KEGG: she:Shewmr4_0898 protein of unknown function DUF1212; hypothetical protein 1093717..1094478 Shewanella putrefaciens CN-32 5081795 YP_001182511.1 CDS Sputcn32_0983 NC_009438.1 1094475 1094948 D KEGG: son:SO3647 hypothetical protein; hypothetical protein 1094475..1094948 Shewanella putrefaciens CN-32 5081796 YP_001182512.1 CDS Sputcn32_0984 NC_009438.1 1094978 1095460 D PFAM: dihydrofolate reductase region; KEGG: shm:Shewmr7_3120 dihydrofolate reductase; dihydrofolate reductase 1094978..1095460 Shewanella putrefaciens CN-32 5081797 YP_001182513.1 CDS Sputcn32_0985 NC_009438.1 1095676 1096092 D KEGG: son:SO3645 hypothetical protein; hypothetical protein 1095676..1096092 Shewanella putrefaciens CN-32 5081798 YP_001182514.1 CDS Sputcn32_0986 NC_009438.1 1096277 1098298 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_0902 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1096277..1098298) Shewanella putrefaciens CN-32 5081799 YP_001182515.1 CDS apaH NC_009438.1 1098394 1099218 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1098394..1099218) Shewanella putrefaciens CN-32 5081800 YP_001182516.1 CDS apaG NC_009438.1 1099240 1099620 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(1099240..1099620) Shewanella putrefaciens CN-32 5081801 YP_001182517.1 CDS ksgA NC_009438.1 1099672 1100478 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1099672..1100478) Shewanella putrefaciens CN-32 5081802 YP_001182518.1 CDS pdxA NC_009438.1 1100494 1101480 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1100494..1101480) Shewanella putrefaciens CN-32 5081803 YP_001182519.1 CDS Sputcn32_0991 NC_009438.1 1101487 1102791 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_0907 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1101487..1102791) Shewanella putrefaciens CN-32 5081804 YP_001182520.1 CDS Sputcn32_0992 NC_009438.1 1103035 1105332 R PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: shm:Shewmr7_3112 organic solvent tolerance protein; organic solvent tolerance protein complement(1103035..1105332) Shewanella putrefaciens CN-32 5081805 YP_001182521.1 CDS Sputcn32_0993 NC_009438.1 1105449 1106528 D PFAM: aminoglycoside phosphotransferase; KEGG: she:Shewmr4_0909 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1105449..1106528 Shewanella putrefaciens CN-32 5081759 YP_001182522.1 CDS Sputcn32_0994 NC_009438.1 1106529 1107206 D PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase 1106529..1107206 Shewanella putrefaciens CN-32 5081760 YP_001182523.1 CDS djlA NC_009438.1 1107273 1108061 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1107273..1108061 Shewanella putrefaciens CN-32 5081761 YP_001182524.1 CDS Sputcn32_0996 NC_009438.1 1108103 1108741 D KEGG: shm:Shewmr7_3108 hypothetical protein; hypothetical protein 1108103..1108741 Shewanella putrefaciens CN-32 5081762 YP_001182525.1 CDS Sputcn32_0997 NC_009438.1 1108766 1109719 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: shm:Shewmr7_3107 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase 1108766..1109719 Shewanella putrefaciens CN-32 5081763 YP_001182526.1 CDS Sputcn32_0998 NC_009438.1 1109789 1112062 R PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_3103 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1109789..1112062) Shewanella putrefaciens CN-32 5081764 YP_001182527.1 CDS Sputcn32_0999 NC_009438.1 1112052 1113533 R KEGG: she:Shewmr4_3021 hypothetical protein; hypothetical protein complement(1112052..1113533) Shewanella putrefaciens CN-32 5081765 YP_001182528.1 CDS Sputcn32_1000 NC_009438.1 1113688 1115412 R PFAM: pseudouridine synthase; KEGG: sdn:Sden_0688 pseudouridine synthase; pseudouridine synthase complement(1113688..1115412) Shewanella putrefaciens CN-32 5081766 YP_001182529.1 CDS purT NC_009438.1 1115663 1116838 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(1115663..1116838) Shewanella putrefaciens CN-32 5081767 YP_001182530.1 CDS Sputcn32_1002 NC_009438.1 1117161 1118291 R KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(1117161..1118291) Shewanella putrefaciens CN-32 5081768 YP_001182531.1 CDS Sputcn32_1003 NC_009438.1 1118288 1119157 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein; sulfate ABC transporter permease complement(1118288..1119157) Shewanella putrefaciens CN-32 5081769 YP_001182532.1 CDS Sputcn32_1004 NC_009438.1 1119167 1120012 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein; sulfate ABC transporter permease complement(1119167..1120012) Shewanella putrefaciens CN-32 5081806 YP_001182533.1 CDS Sputcn32_1005 NC_009438.1 1120199 1121206 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3012 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(1120199..1121206) Shewanella putrefaciens CN-32 5081807 YP_001182534.1 CDS cysM NC_009438.1 1121418 1122296 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1121418..1122296 Shewanella putrefaciens CN-32 5081808 YP_001182535.1 CDS Sputcn32_1007 NC_009438.1 1122372 1122908 R KEGG: she:Shewmr4_3009 hypothetical protein; hypothetical protein complement(1122372..1122908) Shewanella putrefaciens CN-32 5081809 YP_001182536.1 CDS Sputcn32_1008 NC_009438.1 1123080 1123388 D PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_3089 protein of unknown function DUF1289; hypothetical protein 1123080..1123388 Shewanella putrefaciens CN-32 5081810 YP_001182537.1 CDS Sputcn32_1009 NC_009438.1 1123488 1124756 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_3007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1123488..1124756) Shewanella putrefaciens CN-32 5081811 YP_001182538.1 CDS Sputcn32_1010 NC_009438.1 1124766 1125479 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3087 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1124766..1125479) Shewanella putrefaciens CN-32 5081812 YP_001182539.1 CDS Sputcn32_1011 NC_009438.1 1125479 1125892 R KEGG: shm:Shewmr7_3086 hypothetical protein; hypothetical protein complement(1125479..1125892) Shewanella putrefaciens CN-32 5081813 YP_001182540.1 CDS Sputcn32_1012 NC_009438.1 1125898 1126764 R PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein complement(1125898..1126764) Shewanella putrefaciens CN-32 5081814 YP_001182541.1 CDS Sputcn32_1013 NC_009438.1 1127143 1127379 R KEGG: shm:Shewmr7_3084 hypothetical protein; hypothetical protein complement(1127143..1127379) Shewanella putrefaciens CN-32 5081815 YP_001182542.1 CDS Sputcn32_1014 NC_009438.1 1128142 1128705 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein 1128142..1128705 Shewanella putrefaciens CN-32 5081816 YP_001182543.1 CDS Sputcn32_1015 NC_009438.1 1128759 1129229 R KEGG: son:SO3587 hypothetical protein; hypothetical protein complement(1128759..1129229) Shewanella putrefaciens CN-32 5081817 YP_001182544.1 CDS Sputcn32_1016 NC_009438.1 1129424 1129840 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_3081 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1129424..1129840) Shewanella putrefaciens CN-32 5081818 YP_001182545.1 CDS Sputcn32_1017 NC_009438.1 1129897 1130511 R PFAM: NADPH-dependent FMN reductase; KEGG: shm:Shewmr7_3080 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1129897..1130511) Shewanella putrefaciens CN-32 5081819 YP_001182546.1 CDS Sputcn32_1018 NC_009438.1 1130658 1131290 D PFAM: Helix-turn-helix, type 11 domain protein; KEGG: she:Shewmr4_2998 putative transcriptional regulator; putative transcriptional regulator 1130658..1131290 Shewanella putrefaciens CN-32 5081714 YP_001182547.1 CDS Sputcn32_1019 NC_009438.1 1131352 1132062 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: she:Shewmr4_2997 pseudouridine synthase, Rsu; pseudouridine synthase 1131352..1132062 Shewanella putrefaciens CN-32 5081715 YP_001182548.1 CDS Sputcn32_1020 NC_009438.1 1132084 1133709 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3076 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1132084..1133709) Shewanella putrefaciens CN-32 5081716 YP_001182549.1 CDS Sputcn32_1021 NC_009438.1 1134461 1135222 R KEGG: shm:Shewmr7_3075 putative lipoprotein; putative lipoprotein complement(1134461..1135222) Shewanella putrefaciens CN-32 5081720 YP_001182550.1 CDS Sputcn32_1022 NC_009438.1 1135345 1136319 D KEGG: shm:Shewmr7_3074 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1135345..1136319 Shewanella putrefaciens CN-32 5081721 YP_001182551.1 CDS Sputcn32_1023 NC_009438.1 1136320 1137054 D PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein 1136320..1137054 Shewanella putrefaciens CN-32 5081722 YP_001182552.1 CDS Sputcn32_1024 NC_009438.1 1137253 1139826 D PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_3072 ATPase AAA-2 domain protein; ATPase 1137253..1139826 Shewanella putrefaciens CN-32 5081723 YP_001182553.1 CDS Sputcn32_1025 NC_009438.1 1139930 1140397 R KEGG: shm:Shewmr7_3071 hypothetical protein; hypothetical protein complement(1139930..1140397) Shewanella putrefaciens CN-32 5081724 YP_001182554.1 CDS Sputcn32_1026 NC_009438.1 1140493 1141344 D KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1140493..1141344 Shewanella putrefaciens CN-32 5081725 YP_001182555.1 CDS Sputcn32_1028 NC_009438.1 1147970 1148344 D KEGG: sfr:Sfri_1559 ISSod10, transposase OrfB; ISSod10, transposase OrfB 1147970..1148344 Shewanella putrefaciens CN-32 5081730 YP_001182556.1 CDS Sputcn32_1029 NC_009438.1 1148793 1149059 D TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: she:Shewmr4_2987 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase subunit gamma 1148793..1149059 Shewanella putrefaciens CN-32 5081731 YP_001182557.1 CDS Sputcn32_1030 NC_009438.1 1149071 1150897 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1149071..1150897 Shewanella putrefaciens CN-32 5081732 YP_001182558.1 CDS Sputcn32_1031 NC_009438.1 1150906 1152036 D KEGG: she:Shewmr4_2985 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 1150906..1152036 Shewanella putrefaciens CN-32 5081733 YP_001182559.1 CDS Sputcn32_1032 NC_009438.1 1152077 1152244 R KEGG: shm:Shewmr7_3066 hypothetical protein; hypothetical protein complement(1152077..1152244) Shewanella putrefaciens CN-32 5081734 YP_001182560.1 CDS Sputcn32_1033 NC_009438.1 1152418 1153677 R PFAM: sodium:dicarboxylate symporter; KEGG: shm:Shewmr7_3065 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1152418..1153677) Shewanella putrefaciens CN-32 5081735 YP_001182561.1 CDS Sputcn32_1034 NC_009438.1 1154052 1154477 D KEGG: she:Shewmr4_2982 hypothetical protein; hypothetical protein 1154052..1154477 Shewanella putrefaciens CN-32 5081736 YP_001182562.1 CDS Sputcn32_1035 NC_009438.1 1154627 1157461 D PFAM: peptidase M16 domain protein; KEGG: she:Shewmr4_2981 peptidase M16 domain protein; peptidase M16 domain-containing protein 1154627..1157461 Shewanella putrefaciens CN-32 5081737 YP_001182563.1 CDS Sputcn32_1036 NC_009438.1 1157647 1159296 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1157647..1159296 Shewanella putrefaciens CN-32 5081738 YP_001182564.1 CDS Sputcn32_1037 NC_009438.1 1159314 1159757 D KEGG: shm:Shewmr7_3061 hypothetical protein; hypothetical protein 1159314..1159757 Shewanella putrefaciens CN-32 5081739 YP_001182565.1 CDS Sputcn32_1038 NC_009438.1 1159765 1160382 D KEGG: she:Shewmr4_2978 hypothetical protein; hypothetical protein 1159765..1160382 Shewanella putrefaciens CN-32 5081740 YP_001182566.1 CDS Sputcn32_1039 NC_009438.1 1160475 1161743 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_3059 diguanylate cyclase with GAF sensor; diguanylate cyclase complement(1160475..1161743) Shewanella putrefaciens CN-32 5081741 YP_001182567.1 CDS Sputcn32_1040 NC_009438.1 1161896 1162993 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1161896..1162993) Shewanella putrefaciens CN-32 5081742 YP_001182568.1 CDS Sputcn32_1041 NC_009438.1 1162993 1163484 R KEGG: she:Shewmr4_2975 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1162993..1163484) Shewanella putrefaciens CN-32 5081743 YP_001182569.1 CDS Sputcn32_1042 NC_009438.1 1163764 1165521 R putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM complement(1163764..1165521) Shewanella putrefaciens CN-32 5081744 YP_001182570.1 CDS Sputcn32_1043 NC_009438.1 1165724 1167625 D PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein 1165724..1167625 Shewanella putrefaciens CN-32 5081745 YP_001182571.1 CDS Sputcn32_1044 NC_009438.1 1167712 1168317 D PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: shm:Shewmr7_3054 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1167712..1168317 Shewanella putrefaciens CN-32 5081746 YP_001182572.1 CDS Sputcn32_1045 NC_009438.1 1168310 1169065 D KEGG: she:Shewmr4_2971 hypothetical protein; hypothetical protein 1168310..1169065 Shewanella putrefaciens CN-32 5081747 YP_001182573.1 CDS Sputcn32_1046 NC_009438.1 1169287 1169823 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shm:Shewmr7_3052 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 1169287..1169823 Shewanella putrefaciens CN-32 5081748 YP_001182574.1 CDS Sputcn32_1047 NC_009438.1 1169917 1170102 R KEGG: shm:Shewmr7_3051 hypothetical protein; hypothetical protein complement(1169917..1170102) Shewanella putrefaciens CN-32 5081749 YP_001182575.1 CDS pgi NC_009438.1 1170319 1171956 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1170319..1171956) Shewanella putrefaciens CN-32 5081750 YP_001182576.1 CDS Sputcn32_1049 NC_009438.1 1171977 1172933 R KEGG: shm:Shewmr7_3049 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(1171977..1172933) Shewanella putrefaciens CN-32 5081751 YP_001182577.1 CDS Sputcn32_1050 NC_009438.1 1173183 1174283 R PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein complement(1173183..1174283) Shewanella putrefaciens CN-32 5081752 YP_001182578.1 CDS Sputcn32_1051 NC_009438.1 1174537 1176903 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase complement(1174537..1176903) Shewanella putrefaciens CN-32 5081753 YP_001182579.1 CDS Sputcn32_1052 NC_009438.1 1177331 1178776 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: she:Shewmr4_2964 amino acid carrier protein; amino acid carrier protein 1177331..1178776 Shewanella putrefaciens CN-32 5081754 YP_001182580.1 CDS Sputcn32_1053 NC_009438.1 1178906 1179679 D PFAM: protein of unknown function DUF328; KEGG: shm:Shewmr7_3045 protein of unknown function DUF328; hypothetical protein 1178906..1179679 Shewanella putrefaciens CN-32 5081755 YP_001182581.1 CDS Sputcn32_1054 NC_009438.1 1179739 1181148 R PFAM: peptidase M20; peptidase M28; KEGG: she:Shewmr4_2962 peptidase M28; peptidase M28 complement(1179739..1181148) Shewanella putrefaciens CN-32 5081756 YP_001182582.1 CDS Sputcn32_1055 NC_009438.1 1181284 1181580 D PFAM: regulatory protein, ArsR; KEGG: shm:Shewmr7_3043 transcriptional regulator, ArsR family; regulatory protein ArsR 1181284..1181580 Shewanella putrefaciens CN-32 5081757 YP_001182583.1 CDS rpsT NC_009438.1 1181636 1181902 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1181636..1181902) Shewanella putrefaciens CN-32 5081758 YP_001182584.1 CDS Sputcn32_1057 NC_009438.1 1182155 1183714 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: she:Shewmr4_2959 integral membrane protein MviN; integral membrane protein MviN 1182155..1183714 Shewanella putrefaciens CN-32 5081665 YP_001182585.1 CDS Sputcn32_1058 NC_009438.1 1183780 1184715 D KEGG: she:Shewmr4_2958 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin biosynthesis protein RibF 1183780..1184715 Shewanella putrefaciens CN-32 5081666 YP_001182586.1 CDS ileS NC_009438.1 1184748 1187570 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1184748..1187570 Shewanella putrefaciens CN-32 5081667 YP_001182587.1 CDS lspA NC_009438.1 1187580 1188095 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1187580..1188095 Shewanella putrefaciens CN-32 5081668 YP_001182588.1 CDS Sputcn32_1061 NC_009438.1 1188092 1188514 D KEGG: shm:Shewmr7_3037 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1188092..1188514 Shewanella putrefaciens CN-32 5081669 YP_001182589.1 CDS ispH NC_009438.1 1188516 1189472 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1188516..1189472 Shewanella putrefaciens CN-32 5081670 YP_001182590.1 CDS Sputcn32_1063 NC_009438.1 1189689 1190240 D TIGRFAM: type IV pilus modification protein PilV; KEGG: shm:Shewmr7_3035 type IV pilus modification protein PilV; type IV pilus modification protein PilV 1189689..1190240 Shewanella putrefaciens CN-32 5081671 YP_001182591.1 CDS Sputcn32_1064 NC_009438.1 1190241 1191224 D KEGG: shm:Shewmr7_3034 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 1190241..1191224 Shewanella putrefaciens CN-32 5081672 YP_001182592.1 CDS Sputcn32_1065 NC_009438.1 1191237 1191671 D KEGG: she:Shewmr4_2951 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1191237..1191671 Shewanella putrefaciens CN-32 5081673 YP_001182593.1 CDS Sputcn32_1066 NC_009438.1 1191676 1195173 D KEGG: she:Shewmr4_2950 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein 1191676..1195173 Shewanella putrefaciens CN-32 5081674 YP_001182594.1 CDS Sputcn32_1067 NC_009438.1 1195180 1195572 D KEGG: shm:Shewmr7_3031 methylation site containing protein; methylation site containing protein 1195180..1195572 Shewanella putrefaciens CN-32 5081675 YP_001182595.1 CDS Sputcn32_1068 NC_009438.1 1195569 1195865 D KEGG: she:Shewmr4_2948 hypothetical protein; hypothetical protein 1195569..1195865 Shewanella putrefaciens CN-32 5081676 YP_001182596.1 CDS Sputcn32_1069 NC_009438.1 1195969 1196454 R KEGG: shm:Shewmr7_3029 methylation site containing protein; methylation site containing protein complement(1195969..1196454) Shewanella putrefaciens CN-32 5081677 YP_001182597.1 CDS Sputcn32_1070 NC_009438.1 1196604 1197116 R KEGG: shm:Shewmr7_3028 methylation site containing protein; methylation site containing protein complement(1196604..1197116) Shewanella putrefaciens CN-32 5081678 YP_001182598.1 CDS Sputcn32_1071 NC_009438.1 1197367 1197705 D PFAM: nitrogen regulatory protein P-II; KEGG: shm:Shewmr7_3027 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1197367..1197705 Shewanella putrefaciens CN-32 5081679 YP_001182599.1 CDS Sputcn32_1072 NC_009438.1 1197893 1199182 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shm:Shewmr7_3026 NADH dehydrogenase; NADH dehydrogenase 1197893..1199182 Shewanella putrefaciens CN-32 5081680 YP_001182600.1 CDS Sputcn32_1073 NC_009438.1 1199246 1200262 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_3025 transcriptional regulator, LacI family; regulatory protein, LacI complement(1199246..1200262) Shewanella putrefaciens CN-32 5081681 YP_001182601.1 CDS Sputcn32_1074 NC_009438.1 1200687 1203305 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor; TonB-dependent receptor 1200687..1203305 Shewanella putrefaciens CN-32 5081682 YP_001182602.1 CDS Sputcn32_1075 NC_009438.1 1203560 1206262 D PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: she:Shewmr4_2936 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1203560..1206262 Shewanella putrefaciens CN-32 5081683 YP_001182603.1 CDS Sputcn32_1076 NC_009438.1 1206463 1207419 D PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: shm:Shewmr7_3017 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 1206463..1207419 Shewanella putrefaciens CN-32 5081684 YP_001182604.1 CDS Sputcn32_1077 NC_009438.1 1207437 1208435 D PFAM: sugar isomerase (SIS); KEGG: shm:Shewmr7_3016 glutamine--fructose-6-phosphate transaminase (isomerizing); glutamine--fructose-6-phosphate transaminase (isomerizing) 1207437..1208435 Shewanella putrefaciens CN-32 5081685 YP_001182605.1 CDS Sputcn32_1078 NC_009438.1 1208569 1209738 D KEGG: she:Shewmr4_2933 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1208569..1209738 Shewanella putrefaciens CN-32 5081686 YP_001182606.1 CDS Sputcn32_1079 NC_009438.1 1209895 1211049 D KEGG: she:Shewmr4_2932 hypothetical protein; hypothetical protein 1209895..1211049 Shewanella putrefaciens CN-32 5081687 YP_001182607.1 CDS Sputcn32_1080 NC_009438.1 1211367 1212665 D TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter; glucose/galactose transporter 1211367..1212665 Shewanella putrefaciens CN-32 5081688 YP_001182608.1 CDS Sputcn32_1081 NC_009438.1 1212789 1213511 R KEGG: shm:Shewmr7_3012 hypothetical protein; hypothetical protein complement(1212789..1213511) Shewanella putrefaciens CN-32 5081689 YP_001182609.1 CDS Sputcn32_1082 NC_009438.1 1213695 1214060 R PFAM: protein of unknown function DUF861, cupin_3; KEGG: shm:Shewmr7_3011 protein of unknown function DUF861, cupin_3; hypothetical protein complement(1213695..1214060) Shewanella putrefaciens CN-32 5081690 YP_001182610.1 CDS Sputcn32_1083 NC_009438.1 1214091 1215581 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1214091..1215581) Shewanella putrefaciens CN-32 5081691 YP_001182611.1 CDS Sputcn32_1084 NC_009438.1 1215651 1216988 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1215651..1216988) Shewanella putrefaciens CN-32 5081692 YP_001182612.1 CDS Sputcn32_1085 NC_009438.1 1217269 1218765 D PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2926 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 1217269..1218765 Shewanella putrefaciens CN-32 5081693 YP_001182613.1 CDS Sputcn32_1086 NC_009438.1 1219469 1219672 D KEGG: son:SO4411 hypothetical protein; hypothetical protein 1219469..1219672 Shewanella putrefaciens CN-32 5081694 YP_001182614.1 CDS Sputcn32_1087 NC_009438.1 1220859 1221272 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: shm:Shewmr7_3007 rare lipoprotein A; rare lipoprotein A 1220859..1221272 Shewanella putrefaciens CN-32 5081695 YP_001182615.1 CDS Sputcn32_1088 NC_009438.1 1221466 1222323 D PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 1221466..1222323 Shewanella putrefaciens CN-32 5081696 YP_001182616.1 CDS Sputcn32_1089 NC_009438.1 1222383 1222892 D KEGG: son:SO1262 hypothetical protein; hypothetical protein 1222383..1222892 Shewanella putrefaciens CN-32 5081697 YP_001182617.1 CDS Sputcn32_1090 NC_009438.1 1223019 1224326 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase complement(1223019..1224326) Shewanella putrefaciens CN-32 5081698 YP_001182618.1 CDS Sputcn32_1091 NC_009438.1 1224563 1225111 D PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator 1224563..1225111 Shewanella putrefaciens CN-32 5081699 YP_001182619.1 CDS Sputcn32_1092 NC_009438.1 1225519 1226280 D PFAM: peptidase C26; KEGG: she:Shewmr4_2920 peptidase C26; peptidase C26 1225519..1226280 Shewanella putrefaciens CN-32 5081700 YP_001182620.1 CDS Sputcn32_1093 NC_009438.1 1226283 1227638 D PFAM: glutamine synthetase, catalytic region; KEGG: she:Shewmr4_2919 glutamate--ammonia ligase; glutamate--ammonia ligase 1226283..1227638 Shewanella putrefaciens CN-32 5081701 YP_001182621.1 CDS Sputcn32_1094 NC_009438.1 1228259 1229359 D PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_2918 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1228259..1229359 Shewanella putrefaciens CN-32 5081702 YP_001182622.1 CDS Sputcn32_1095 NC_009438.1 1229534 1230670 D KEGG: shm:Shewmr7_2999 spermidine/putrescine ABC transporter ATPase subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1229534..1230670 Shewanella putrefaciens CN-32 5081703 YP_001182623.1 CDS Sputcn32_1096 NC_009438.1 1230667 1231572 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2998 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1230667..1231572 Shewanella putrefaciens CN-32 5081704 YP_001182624.1 CDS Sputcn32_1097 NC_009438.1 1231569 1232384 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2997 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1231569..1232384 Shewanella putrefaciens CN-32 5081705 YP_001182625.1 CDS Sputcn32_1098 NC_009438.1 1232642 1233928 D PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2996 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1232642..1233928 Shewanella putrefaciens CN-32 5081706 YP_001182626.1 CDS Sputcn32_1099 NC_009438.1 1233979 1235427 D KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 1233979..1235427 Shewanella putrefaciens CN-32 5081707 YP_001182627.1 CDS Sputcn32_1100 NC_009438.1 1235460 1236737 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1235460..1236737 Shewanella putrefaciens CN-32 5081708 YP_001182628.1 CDS Sputcn32_1101 NC_009438.1 1236884 1237891 R PFAM: luciferase family protein; KEGG: she:Shewmr4_2911 luciferase family protein; luciferase family protein complement(1236884..1237891) Shewanella putrefaciens CN-32 5081709 YP_001182629.1 CDS Sputcn32_1102 NC_009438.1 1238409 1240049 R TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_2992 amino acid/peptide transporter; amino acid/peptide transporter complement(1238409..1240049) Shewanella putrefaciens CN-32 5081710 YP_001182630.1 CDS Sputcn32_1103 NC_009438.1 1240308 1242428 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2991 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1240308..1242428 Shewanella putrefaciens CN-32 5081711 YP_001182631.1 CDS Sputcn32_1104 NC_009438.1 1242929 1244779 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: she:Shewmr4_2908 RNA polymerase, sigma 70 subunit, RpoD; RpoD family RNA polymerase sigma factor complement(1242929..1244779) Shewanella putrefaciens CN-32 5081713 YP_001182632.1 CDS Sputcn32_1105 NC_009438.1 1244910 1246634 R KEGG: shm:Shewmr7_2989 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase complement(1244910..1246634) Shewanella putrefaciens CN-32 5081615 YP_001182633.1 CDS Sputcn32_1106 NC_009438.1 1246718 1247161 R PFAM: GatB/Yqey domain protein; KEGG: she:Shewmr4_2906 GatB/YqeY domain protein; GatB/Yqey domain-containing protein complement(1246718..1247161) Shewanella putrefaciens CN-32 5081616 YP_001182634.1 CDS rpsU NC_009438.1 1247168 1247383 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1247168..1247383) Shewanella putrefaciens CN-32 5081617 YP_001182635.1 CDS Sputcn32_1108 NC_009438.1 1247602 1248618 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1247602..1248618 Shewanella putrefaciens CN-32 5081618 YP_001182636.1 CDS Sputcn32_1109 NC_009438.1 1248697 1249308 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1248697..1249308) Shewanella putrefaciens CN-32 5081619 YP_001182637.1 CDS Sputcn32_1110 NC_009438.1 1249577 1249927 D TIGRFAM: dihydroneopterin aldolase; KEGG: shm:Shewmr7_2984 dihydroneopterin aldolase; dihydroneopterin aldolase 1249577..1249927 Shewanella putrefaciens CN-32 5081620 YP_001182638.1 CDS Sputcn32_1111 NC_009438.1 1250012 1250515 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: she:Shewmr4_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1250012..1250515 Shewanella putrefaciens CN-32 5081621 YP_001182639.1 CDS Sputcn32_1112 NC_009438.1 1250534 1251334 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1250534..1251334 Shewanella putrefaciens CN-32 5081622 YP_001182640.1 CDS Sputcn32_1113 NC_009438.1 1251419 1252276 D KEGG: shm:Shewmr7_2981 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 1251419..1252276 Shewanella putrefaciens CN-32 5081623 YP_001182641.1 CDS Sputcn32_1114 NC_009438.1 1252482 1252748 R KEGG: shm:Shewmr7_2980 major outer membrane lipoprotein, putative; major outer membrane lipoprotein complement(1252482..1252748) Shewanella putrefaciens CN-32 5081624 YP_001182642.1 CDS Sputcn32_1115 NC_009438.1 1252995 1254257 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: shm:Shewmr7_2979 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1252995..1254257) Shewanella putrefaciens CN-32 5081625 YP_001182643.1 CDS Sputcn32_1116 NC_009438.1 1254412 1256091 D PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2896 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 1254412..1256091 Shewanella putrefaciens CN-32 5081626 YP_001182644.1 CDS Sputcn32_1117 NC_009438.1 1256091 1257158 D KEGG: she:Shewmr4_2895 general secretion pathway protein B; general secretion pathway protein B 1256091..1257158 Shewanella putrefaciens CN-32 5081627 YP_001182645.1 CDS Sputcn32_1118 NC_009438.1 1257219 1258466 R PFAM: Citrate transporter; KEGG: she:Shewmr4_2894 citrate transporter; citrate transporter complement(1257219..1258466) Shewanella putrefaciens CN-32 5081628 YP_001182646.1 CDS Sputcn32_1119 NC_009438.1 1258880 1260172 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1258880..1260172) Shewanella putrefaciens CN-32 5081629 YP_001182647.1 CDS Sputcn32_1120 NC_009438.1 1260199 1261218 R Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase complement(1260199..1261218) Shewanella putrefaciens CN-32 5081630 YP_001182648.1 CDS Sputcn32_1121 NC_009438.1 1261442 1263166 R PFAM: Cl- channel, voltage-gated family protein; KEGG: shm:Shewmr7_2973 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein complement(1261442..1263166) Shewanella putrefaciens CN-32 5081631 YP_001182649.1 CDS Sputcn32_1122 NC_009438.1 1263240 1264046 D KEGG: she:Shewmr4_2890 hypothetical protein; hypothetical protein 1263240..1264046 Shewanella putrefaciens CN-32 5081632 YP_001182650.1 CDS Sputcn32_1123 NC_009438.1 1264039 1264389 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1264039..1264389 Shewanella putrefaciens CN-32 5081633 YP_001182651.1 CDS Sputcn32_1124 NC_009438.1 1264487 1264930 R KEGG: she:Shewmr4_2888 hypothetical protein; hypothetical protein complement(1264487..1264930) Shewanella putrefaciens CN-32 5081634 YP_001182652.1 CDS Sputcn32_1125 NC_009438.1 1264959 1265339 R KEGG: shm:Shewmr7_2969 hypothetical protein; hypothetical protein complement(1264959..1265339) Shewanella putrefaciens CN-32 5081635 YP_001182653.1 CDS anmK NC_009438.1 1265593 1266702 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1265593..1266702) Shewanella putrefaciens CN-32 5081636 YP_001182654.1 CDS Sputcn32_1127 NC_009438.1 1266724 1268130 R PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: she:Shewmr4_2881 peptidase M23B; peptidase M23B complement(1266724..1268130) Shewanella putrefaciens CN-32 5081637 YP_001182655.1 CDS Sputcn32_1128 NC_009438.1 1268257 1269450 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1268257..1269450 Shewanella putrefaciens CN-32 5081638 YP_001182656.1 CDS Sputcn32_1129 NC_009438.1 1269573 1270001 R KEGG: son:SO1317 hypothetical protein; hypothetical protein complement(1269573..1270001) Shewanella putrefaciens CN-32 5081639 YP_001182657.1 CDS Sputcn32_1130 NC_009438.1 1270122 1270583 R KEGG: she:Shewmr4_2878 hypothetical protein; hypothetical protein complement(1270122..1270583) Shewanella putrefaciens CN-32 5081640 YP_001182658.1 CDS Sputcn32_1131 NC_009438.1 1270615 1271241 R PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_2959 protein of unknown function UPF0126; hypothetical protein complement(1270615..1271241) Shewanella putrefaciens CN-32 5081641 YP_001182659.1 CDS Sputcn32_1132 NC_009438.1 1271238 1271615 R KEGG: shm:Shewmr7_2958 hypothetical protein; hypothetical protein complement(1271238..1271615) Shewanella putrefaciens CN-32 5081642 YP_001182660.1 CDS Sputcn32_1133 NC_009438.1 1271671 1272660 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein; cobalamin biosynthesis protein CbiB complement(1271671..1272660) Shewanella putrefaciens CN-32 5081643 YP_001182661.1 CDS Sputcn32_1134 NC_009438.1 1272698 1273393 R PFAM: purine and other phosphorylases, family 1; KEGG: she:Shewmr4_2874 methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase complement(1272698..1273393) Shewanella putrefaciens CN-32 5081644 YP_001182662.1 CDS gltD NC_009438.1 1273725 1275131 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1273725..1275131) Shewanella putrefaciens CN-32 5081645 YP_001182663.1 CDS gltB NC_009438.1 1275138 1279586 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(1275138..1279586) Shewanella putrefaciens CN-32 5081646 YP_001182664.1 CDS Sputcn32_1137 NC_009438.1 1280171 1281100 D KEGG: shm:Shewmr7_2952 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 1280171..1281100 Shewanella putrefaciens CN-32 5081647 YP_001182665.1 CDS Sputcn32_1138 NC_009438.1 1281291 1281656 D PFAM: Hpt domain protein; KEGG: shm:Shewmr7_2951 Hpt protein; Hpt protein 1281291..1281656 Shewanella putrefaciens CN-32 5081648 YP_001182666.1 CDS Sputcn32_1139 NC_009438.1 1282022 1282933 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2950 transcriptional regulator, LysR family; LysR family transcriptional regulator 1282022..1282933 Shewanella putrefaciens CN-32 5081649 YP_001182667.1 CDS Sputcn32_1140 NC_009438.1 1282988 1284055 R KEGG: shm:Shewmr7_2949 putative adenylate/guanylate cyclase; putative adenylate/guanylate cyclase complement(1282988..1284055) Shewanella putrefaciens CN-32 5081650 YP_001182668.1 CDS Sputcn32_1141 NC_009438.1 1284178 1284849 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1284178..1284849) Shewanella putrefaciens CN-32 5081651 YP_001182669.1 CDS Sputcn32_1142 NC_009438.1 1285537 1286061 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1285537..1286061 Shewanella putrefaciens CN-32 5081652 YP_001182670.1 CDS Sputcn32_1143 NC_009438.1 1286084 1288318 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: she:Shewmr4_2864 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1286084..1288318 Shewanella putrefaciens CN-32 5081653 YP_001182671.1 CDS Sputcn32_1144 NC_009438.1 1288377 1289177 D PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein 1288377..1289177 Shewanella putrefaciens CN-32 5081654 YP_001182672.1 CDS Sputcn32_1145 NC_009438.1 1289217 1290023 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1289217..1290023 Shewanella putrefaciens CN-32 5081655 YP_001182673.1 CDS thyA NC_009438.1 1290023 1290817 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1290023..1290817 Shewanella putrefaciens CN-32 5081656 YP_001182674.1 CDS nhaA NC_009438.1 1290934 1292109 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1290934..1292109 Shewanella putrefaciens CN-32 5081657 YP_001182675.1 CDS Sputcn32_1148 NC_009438.1 1292106 1292492 D KEGG: son:SO1337 hypothetical protein; hypothetical protein 1292106..1292492 Shewanella putrefaciens CN-32 5081658 YP_001182676.1 CDS nhaR NC_009438.1 1292600 1293508 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1292600..1293508 Shewanella putrefaciens CN-32 5081659 YP_001182677.1 CDS Sputcn32_1150 NC_009438.1 1293603 1293842 D PFAM: protein of unknown function DUF339; KEGG: shm:Shewmr7_2939 protein of unknown function DUF339; hypothetical protein 1293603..1293842 Shewanella putrefaciens CN-32 5081660 YP_001182678.1 CDS Sputcn32_1151 NC_009438.1 1293892 1294263 D KEGG: son:SO1340 hypothetical protein; hypothetical protein 1293892..1294263 Shewanella putrefaciens CN-32 5081661 YP_001182679.1 CDS Sputcn32_1152 NC_009438.1 1294300 1295913 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1294300..1295913) Shewanella putrefaciens CN-32 5081662 YP_001182680.1 CDS Sputcn32_1153 NC_009438.1 1296103 1296681 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1296103..1296681 Shewanella putrefaciens CN-32 5081663 YP_001182681.1 CDS Sputcn32_1154 NC_009438.1 1296708 1297328 D PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: she:Shewmr4_2853 anti sigma-E protein, RseA; anti sigma-E protein, RseA 1296708..1297328 Shewanella putrefaciens CN-32 5081664 YP_001182682.1 CDS Sputcn32_1155 NC_009438.1 1297341 1298273 D PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein MucB/RseB 1297341..1298273 Shewanella putrefaciens CN-32 5081565 YP_001182683.1 CDS Sputcn32_1156 NC_009438.1 1298284 1298757 D PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: she:Shewmr4_2851 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC 1298284..1298757 Shewanella putrefaciens CN-32 5081566 YP_001182684.1 CDS Sputcn32_1157 NC_009438.1 1298924 1300714 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1298924..1300714 Shewanella putrefaciens CN-32 5081567 YP_001182685.1 CDS Sputcn32_1158 NC_009438.1 1300887 1301804 D KEGG: shm:Shewmr7_2931 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 1300887..1301804 Shewanella putrefaciens CN-32 5081568 YP_001182686.1 CDS rnc NC_009438.1 1301806 1302486 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1301806..1302486 Shewanella putrefaciens CN-32 5081569 YP_001182687.1 CDS era NC_009438.1 1302483 1303499 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1302483..1303499 Shewanella putrefaciens CN-32 5081570 YP_001182688.1 CDS Sputcn32_1161 NC_009438.1 1303527 1304237 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO 1303527..1304237 Shewanella putrefaciens CN-32 5081571 YP_001182689.1 CDS Sputcn32_1162 NC_009438.1 1304329 1305066 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1304329..1305066 Shewanella putrefaciens CN-32 5081572 YP_001182690.1 CDS acpS NC_009438.1 1305066 1305449 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1305066..1305449 Shewanella putrefaciens CN-32 5081573 YP_001182691.1 CDS Sputcn32_1164 NC_009438.1 1305637 1306161 D PFAM: protein of unknown function DUF962; KEGG: shm:Shewmr7_2925 protein of unknown function DUF962; hypothetical protein 1305637..1306161 Shewanella putrefaciens CN-32 5081574 YP_001182692.1 CDS Sputcn32_1165 NC_009438.1 1306226 1307497 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: she:Shewmr4_2841 protein of unknown function DUF21; hypothetical protein complement(1306226..1307497) Shewanella putrefaciens CN-32 5081575 YP_001182693.1 CDS Sputcn32_1166 NC_009438.1 1307598 1308386 R PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_2922 cytochrome c assembly protein; cytochrome c assembly protein complement(1307598..1308386) Shewanella putrefaciens CN-32 5081576 YP_001182694.1 CDS Sputcn32_1167 NC_009438.1 1308715 1310088 D with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1308715..1310088 Shewanella putrefaciens CN-32 5081577 YP_001182695.1 CDS rpsP NC_009438.1 1310307 1310558 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1310307..1310558 Shewanella putrefaciens CN-32 5081578 YP_001182696.1 CDS rimM NC_009438.1 1310579 1311109 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1310579..1311109 Shewanella putrefaciens CN-32 5081579 YP_001182697.1 CDS trmD NC_009438.1 1311125 1311871 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1311125..1311871 Shewanella putrefaciens CN-32 5081580 YP_001182698.1 CDS rplS NC_009438.1 1311906 1312259 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1311906..1312259 Shewanella putrefaciens CN-32 5081581 YP_001182699.1 CDS Sputcn32_1172 NC_009438.1 1312512 1313603 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1312512..1313603 Shewanella putrefaciens CN-32 5081582 YP_001182700.1 CDS tyrA NC_009438.1 1313619 1314770 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1313619..1314770 Shewanella putrefaciens CN-32 5081583 YP_001182701.1 CDS Sputcn32_1174 NC_009438.1 1314988 1316652 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1314988..1316652 Shewanella putrefaciens CN-32 5081584 YP_001182702.1 CDS Sputcn32_1175 NC_009438.1 1316729 1317844 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: shm:Shewmr7_2913 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1316729..1317844 Shewanella putrefaciens CN-32 5081585 YP_001182703.1 CDS Sputcn32_1176 NC_009438.1 1317986 1318321 D KEGG: she:Shewmr4_2830 hypothetical protein; hypothetical protein 1317986..1318321 Shewanella putrefaciens CN-32 5081586 YP_001182704.1 CDS Sputcn32_1177 NC_009438.1 1318450 1320429 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: she:Shewmr4_2828 chorismate mutase; chorismate mutase complement(1318450..1320429) Shewanella putrefaciens CN-32 5081587 YP_001182705.1 CDS Sputcn32_1178 NC_009438.1 1320779 1322287 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1320779..1322287) Shewanella putrefaciens CN-32 5081588 YP_001182706.1 CDS Sputcn32_1179 NC_009438.1 1322544 1323656 D PFAM: permease YjgP/YjgQ family protein; KEGG: she:Shewmr4_2826 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1322544..1323656 Shewanella putrefaciens CN-32 5081589 YP_001182707.1 CDS Sputcn32_1180 NC_009438.1 1323653 1324711 D PFAM: permease YjgP/YjgQ family protein; KEGG: shm:Shewmr7_2907 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1323653..1324711 Shewanella putrefaciens CN-32 5081590 YP_001182708.1 CDS Sputcn32_1181 NC_009438.1 1324787 1325296 R PFAM: RDD domain containing protein; KEGG: she:Shewmr4_2823 RDD domain containing protein; RDD domain-containing protein complement(1324787..1325296) Shewanella putrefaciens CN-32 5081591 YP_001182709.1 CDS Sputcn32_1182 NC_009438.1 1325343 1325600 R KEGG: shm:Shewmr7_2905 hypothetical protein; hypothetical protein complement(1325343..1325600) Shewanella putrefaciens CN-32 5081592 YP_001182710.1 CDS Sputcn32_1183 NC_009438.1 1325619 1325969 R PFAM: protein of unknown function DUF486; KEGG: she:Shewmr4_2821 protein of unknown function DUF486; hypothetical protein complement(1325619..1325969) Shewanella putrefaciens CN-32 5081593 YP_001182711.1 CDS Sputcn32_1184 NC_009438.1 1325972 1326463 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1325972..1326463) Shewanella putrefaciens CN-32 5081594 YP_001182712.1 CDS Sputcn32_1185 NC_009438.1 1326852 1327484 D PFAM: protein of unknown function DUF1449; KEGG: shm:Shewmr7_2900 protein of unknown function DUF1449; hypothetical protein 1326852..1327484 Shewanella putrefaciens CN-32 5081595 YP_001182713.1 CDS Sputcn32_1186 NC_009438.1 1327521 1329293 D PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein 1327521..1329293 Shewanella putrefaciens CN-32 5081596 YP_001182714.1 CDS Sputcn32_1187 NC_009438.1 1329431 1331767 R KEGG: shm:Shewmr7_2577 decaheme cytochrome c; hypothetical protein complement(1329431..1331767) Shewanella putrefaciens CN-32 5081597 YP_001182715.1 CDS Sputcn32_1188 NC_009438.1 1332117 1332761 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin 1332117..1332761 Shewanella putrefaciens CN-32 5081598 YP_001182716.1 CDS Sputcn32_1189 NC_009438.1 1332778 1334901 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: ecj:JW5272 predicted oxidoreductase; putative oxidoreductase 1332778..1334901 Shewanella putrefaciens CN-32 5081599 YP_001182717.1 CDS Sputcn32_1190 NC_009438.1 1334920 1335441 D hypothetical protein 1334920..1335441 Shewanella putrefaciens CN-32 5081600 YP_001182718.1 CDS Sputcn32_1191 NC_009438.1 1335618 1336181 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein; PfpI family intracellular peptidase 1335618..1336181 Shewanella putrefaciens CN-32 5081601 YP_001182719.1 CDS Sputcn32_1192 NC_009438.1 1336347 1336664 D KEGG: son:SO1379 hypothetical protein; hypothetical protein 1336347..1336664 Shewanella putrefaciens CN-32 5081602 YP_001182720.1 CDS Sputcn32_1193 NC_009438.1 1336763 1337398 R KEGG: shm:Shewmr7_2895 hypothetical protein; hypothetical protein complement(1336763..1337398) Shewanella putrefaciens CN-32 5081603 YP_001182721.1 CDS Sputcn32_1194 NC_009438.1 1337613 1338503 D KEGG: shm:Shewmr7_2893 hypothetical protein; hypothetical protein 1337613..1338503 Shewanella putrefaciens CN-32 5081604 YP_001182722.1 CDS Sputcn32_1195 NC_009438.1 1338622 1339923 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2892 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1338622..1339923) Shewanella putrefaciens CN-32 5081605 YP_001182723.1 CDS Sputcn32_1196 NC_009438.1 1340248 1341816 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: shm:Shewmr7_2891 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer complement(1340248..1341816) Shewanella putrefaciens CN-32 5081606 YP_001182724.1 CDS Sputcn32_1197 NC_009438.1 1342379 1342573 D KEGG: son:SO1387 HD domain protein; hypothetical protein 1342379..1342573 Shewanella putrefaciens CN-32 5081607 YP_001182725.1 CDS Sputcn32_1198 NC_009438.1 1342715 1344502 R PFAM: peptidase M24; KEGG: shm:Shewmr7_2890 peptidase M24; peptidase M24 complement(1342715..1344502) Shewanella putrefaciens CN-32 5081608 YP_001182726.1 CDS Sputcn32_1199 NC_009438.1 1344868 1345653 D PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein 1344868..1345653 Shewanella putrefaciens CN-32 5081609 YP_001182727.1 CDS Sputcn32_1200 NC_009438.1 1345724 1346194 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(1345724..1346194) Shewanella putrefaciens CN-32 5081610 YP_001182728.1 CDS Sputcn32_1201 NC_009438.1 1346436 1347779 D PFAM: short chain fatty acid transporter; KEGG: shm:Shewmr7_2886 short chain fatty acid transporter; short chain fatty acid transporter 1346436..1347779 Shewanella putrefaciens CN-32 5081611 YP_001182729.1 CDS Sputcn32_1202 NC_009438.1 1347860 1348288 R PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein complement(1347860..1348288) Shewanella putrefaciens CN-32 5081612 YP_001182730.1 CDS Sputcn32_1203 NC_009438.1 1348316 1349512 R PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein complement(1348316..1349512) Shewanella putrefaciens CN-32 5081613 YP_001182731.1 CDS Sputcn32_1204 NC_009438.1 1349662 1350099 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase; cytosine deaminase complement(1349662..1350099) Shewanella putrefaciens CN-32 5081614 YP_001182732.1 CDS Sputcn32_1205 NC_009438.1 1350234 1350725 R KEGG: shm:Shewmr7_2880 hypothetical protein; hypothetical protein complement(1350234..1350725) Shewanella putrefaciens CN-32 5081516 YP_001182733.1 CDS Sputcn32_1206 NC_009438.1 1350963 1351877 D PFAM: protein of unknown function DUF368; KEGG: shm:Shewmr7_2879 protein of unknown function DUF368; hypothetical protein 1350963..1351877 Shewanella putrefaciens CN-32 5081517 YP_001182734.1 CDS Sputcn32_1207 NC_009438.1 1352106 1353707 D KEGG: shm:Shewmr7_2878 hypothetical protein; hypothetical protein 1352106..1353707 Shewanella putrefaciens CN-32 5081518 YP_001182735.1 CDS Sputcn32_1208 NC_009438.1 1353761 1354444 R PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein; YheO domain-containing protein complement(1353761..1354444) Shewanella putrefaciens CN-32 5081519 YP_001182736.1 CDS Sputcn32_1209 NC_009438.1 1354492 1355766 R PFAM: protein of unknown function DUF1063; KEGG: shm:Shewmr7_2876 protein of unknown function DUF1063; hypothetical protein complement(1354492..1355766) Shewanella putrefaciens CN-32 5081520 YP_001182737.1 CDS Sputcn32_1210 NC_009438.1 1356001 1356309 D PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; regulatory protein ArsR 1356001..1356309 Shewanella putrefaciens CN-32 5081521 YP_001182738.1 CDS Sputcn32_1211 NC_009438.1 1356370 1356612 D TIGRFAM: redox-active disulfide protein 2; KEGG: plt:Plut_1705 redox-active disulfide protein 2; redox-active disulfide protein 2 1356370..1356612 Shewanella putrefaciens CN-32 5081522 YP_001182739.1 CDS Sputcn32_1212 NC_009438.1 1356631 1357119 D KEGG: mhu:Mhun_0869 hypothetical protein; hypothetical protein 1356631..1357119 Shewanella putrefaciens CN-32 5081523 YP_001182740.1 CDS Sputcn32_1213 NC_009438.1 1357112 1357816 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: bth:BT0800 hypothetical protein; cytochrome c biogenesis protein, transmembrane region 1357112..1357816 Shewanella putrefaciens CN-32 5081524 YP_001182741.1 CDS Sputcn32_1214 NC_009438.1 1357900 1358355 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sbo:SBO_3501 arsenate reductase; arsenate reductase complement(1357900..1358355) Shewanella putrefaciens CN-32 5081525 YP_001182742.1 CDS Sputcn32_1215 NC_009438.1 1358436 1359719 R TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein complement(1358436..1359719) Shewanella putrefaciens CN-32 5081526 YP_001182743.1 CDS Sputcn32_1216 NC_009438.1 1359922 1361349 R PFAM: glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase complement(1359922..1361349) Shewanella putrefaciens CN-32 5081527 YP_001182744.1 CDS Sputcn32_1217 NC_009438.1 1361526 1362524 R PFAM: permease; KEGG: son:SO0503 hypothetical protein; permease complement(1361526..1362524) Shewanella putrefaciens CN-32 5081528 YP_001182745.1 CDS Sputcn32_1218 NC_009438.1 1362748 1363050 D PFAM: regulatory protein, ArsR; KEGG: son:SO0502 transcriptional regulator, ArsR family; regulatory protein ArsR 1362748..1363050 Shewanella putrefaciens CN-32 5081529 YP_001182746.1 CDS Sputcn32_1219 NC_009438.1 1363148 1363564 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfr:Sfri_4004 transcriptional regulator, ArsR family protein; protein tyrosine phosphatase 1363148..1363564 Shewanella putrefaciens CN-32 5081530 YP_001182747.1 CDS Sputcn32_1220 NC_009438.1 1363557 1363904 D PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; regulatory protein ArsR 1363557..1363904 Shewanella putrefaciens CN-32 5081531 YP_001182748.1 CDS Sputcn32_1221 NC_009438.1 1363996 1364994 D PFAM: permease; KEGG: sfr:Sfri_1725 permease; permease 1363996..1364994 Shewanella putrefaciens CN-32 5081532 YP_001182749.1 CDS Sputcn32_1222 NC_009438.1 1365007 1365243 D KEGG: cps:CPS_3356 redox-active disulfide protein 2; redox-active disulfide protein 2 1365007..1365243 Shewanella putrefaciens CN-32 5081533 YP_001182750.1 CDS Sputcn32_1223 NC_009438.1 1365382 1366392 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1365382..1366392 Shewanella putrefaciens CN-32 5081534 YP_001182751.1 CDS Sputcn32_1224 NC_009438.1 1366398 1367636 D PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_4001 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1366398..1367636 Shewanella putrefaciens CN-32 5081535 YP_001182752.1 CDS Sputcn32_1225 NC_009438.1 1367768 1368043 D KEGG: hch:HCH_00506 hypothetical protein; hypothetical protein 1367768..1368043 Shewanella putrefaciens CN-32 5081536 YP_001182753.1 CDS Sputcn32_1226 NC_009438.1 1368484 1369974 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter 1368484..1369974 Shewanella putrefaciens CN-32 5081537 YP_001182754.1 CDS Sputcn32_1227 NC_009438.1 1370008 1370862 D PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein 1370008..1370862 Shewanella putrefaciens CN-32 5081538 YP_001182755.1 CDS Sputcn32_1228 NC_009438.1 1370901 1371173 R hypothetical protein complement(1370901..1371173) Shewanella putrefaciens CN-32 5081539 YP_001182756.1 CDS smpB NC_009438.1 1371649 1372140 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1371649..1372140) Shewanella putrefaciens CN-32 5081541 YP_001182757.1 CDS Sputcn32_1230 NC_009438.1 1372415 1372852 D PFAM: cyclase/dehydrase; KEGG: shm:Shewmr7_2853 cyclase/dehydrase; cyclase/dehydrase 1372415..1372852 Shewanella putrefaciens CN-32 5081542 YP_001182758.1 CDS Sputcn32_1231 NC_009438.1 1372842 1373174 D PFAM: protein of unknown function UPF0125; KEGG: shm:Shewmr7_2852 protein of unknown function UPF0125; hypothetical protein 1372842..1373174 Shewanella putrefaciens CN-32 5081543 YP_001182759.1 CDS Sputcn32_1232 NC_009438.1 1373253 1373777 R PFAM: SmpA/OmlA domain protein; KEGG: shm:Shewmr7_2851 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein complement(1373253..1373777) Shewanella putrefaciens CN-32 5081544 YP_001182760.1 CDS Sputcn32_1233 NC_009438.1 1374352 1375143 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: she:Shewmr4_2772 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1374352..1375143 Shewanella putrefaciens CN-32 5081545 YP_001182761.1 CDS Sputcn32_1234 NC_009438.1 1375189 1375401 D KEGG: shm:Shewmr7_2849 hypothetical protein; hypothetical protein 1375189..1375401 Shewanella putrefaciens CN-32 5081546 YP_001182762.1 CDS Sputcn32_1235 NC_009438.1 1375465 1377198 D KEGG: she:Shewmr4_2770 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase 1375465..1377198 Shewanella putrefaciens CN-32 5081547 YP_001182763.1 CDS Sputcn32_1236 NC_009438.1 1377460 1379229 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: shm:Shewmr7_2847 potassium efflux system protein; potassium efflux system protein 1377460..1379229 Shewanella putrefaciens CN-32 5081548 YP_001182764.1 CDS Sputcn32_1237 NC_009438.1 1379302 1381746 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor, plug complement(1379302..1381746) Shewanella putrefaciens CN-32 5081549 YP_001182765.1 CDS Sputcn32_1238 NC_009438.1 1382530 1384257 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1382530..1384257 Shewanella putrefaciens CN-32 5081550 YP_001182766.1 CDS Sputcn32_1239 NC_009438.1 1384392 1385714 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase 1384392..1385714 Shewanella putrefaciens CN-32 5081551 YP_001182767.1 CDS Sputcn32_1240 NC_009438.1 1386107 1386475 D PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2843 thioesterase superfamily protein; thioesterase superfamily protein 1386107..1386475 Shewanella putrefaciens CN-32 5081552 YP_001182768.1 CDS Sputcn32_1241 NC_009438.1 1386543 1386764 R KEGG: son:SO1487 hypothetical protein; hypothetical protein complement(1386543..1386764) Shewanella putrefaciens CN-32 5081553 YP_001182769.1 CDS Sputcn32_1242 NC_009438.1 1386855 1388153 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sfr:Sfri_3431 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1386855..1388153) Shewanella putrefaciens CN-32 5081554 YP_001182770.1 CDS Sputcn32_1243 NC_009438.1 1388531 1388902 R KEGG: shm:Shewmr7_2841 hypothetical protein; hypothetical protein complement(1388531..1388902) Shewanella putrefaciens CN-32 5081555 YP_001182771.1 CDS Sputcn32_1244 NC_009438.1 1389665 1390813 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase complement(1389665..1390813) Shewanella putrefaciens CN-32 5081556 YP_001182772.1 CDS Sputcn32_1245 NC_009438.1 1391151 1391627 D PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_2761 transcriptional regulator, MarR family; MarR family transcriptional regulator 1391151..1391627 Shewanella putrefaciens CN-32 5081557 YP_001182773.1 CDS Sputcn32_1246 NC_009438.1 1391723 1392355 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: shm:Shewmr7_2838 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1391723..1392355) Shewanella putrefaciens CN-32 5081558 YP_001182774.1 CDS Sputcn32_1247 NC_009438.1 1392868 1395105 D KEGG: shm:Shewmr7_2837 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 1392868..1395105 Shewanella putrefaciens CN-32 5081559 YP_001182775.1 CDS Sputcn32_1248 NC_009438.1 1395170 1397407 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 1395170..1397407 Shewanella putrefaciens CN-32 5081560 YP_001182776.1 CDS Sputcn32_1249 NC_009438.1 1397404 1399611 D KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 1397404..1399611 Shewanella putrefaciens CN-32 5081561 YP_001182777.1 CDS Sputcn32_1250 NC_009438.1 1399614 1402142 D KEGG: she:Shewmr4_2756 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 1399614..1402142 Shewanella putrefaciens CN-32 5081562 YP_001182778.1 CDS glgC NC_009438.1 1402193 1403455 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1402193..1403455 Shewanella putrefaciens CN-32 5081563 YP_001182779.1 CDS Sputcn32_1252 NC_009438.1 1403526 1405133 D PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: shm:Shewmr7_2832 starch synthase; starch synthase 1403526..1405133 Shewanella putrefaciens CN-32 5081564 YP_001182780.1 CDS Sputcn32_1253 NC_009438.1 1405242 1408298 D KEGG: shm:Shewmr7_2831 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1405242..1408298 Shewanella putrefaciens CN-32 5080980 YP_001182781.1 CDS Sputcn32_1254 NC_009438.1 1408419 1409864 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1408419..1409864 Shewanella putrefaciens CN-32 5080981 YP_001182782.1 CDS Sputcn32_1255 NC_009438.1 1409979 1411061 D PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K 1409979..1411061 Shewanella putrefaciens CN-32 5080982 YP_001182783.1 CDS Sputcn32_1256 NC_009438.1 1411075 1411836 R KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative; ABC transporter substrate-binding protein complement(1411075..1411836) Shewanella putrefaciens CN-32 5080983 YP_001182784.1 CDS Sputcn32_1257 NC_009438.1 1412201 1412722 D KEGG: son:SO1504 hypothetical protein; hypothetical protein 1412201..1412722 Shewanella putrefaciens CN-32 5080984 YP_001182785.1 CDS Sputcn32_1258 NC_009438.1 1412801 1414342 R PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_2748 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1412801..1414342) Shewanella putrefaciens CN-32 5080985 YP_001182786.1 CDS Sputcn32_1259 NC_009438.1 1414742 1416091 D PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; multi anti extrusion protein MatE 1414742..1416091 Shewanella putrefaciens CN-32 5080986 YP_001182787.1 CDS Sputcn32_1260 NC_009438.1 1416336 1417847 D KEGG: shm:Shewmr7_2824 hypothetical protein; hypothetical protein 1416336..1417847 Shewanella putrefaciens CN-32 5080987 YP_001182788.1 CDS Sputcn32_1261 NC_009438.1 1417967 1418437 D hypothetical protein 1417967..1418437 Shewanella putrefaciens CN-32 5080988 YP_001182789.1 CDS Sputcn32_1262 NC_009438.1 1418726 1419139 D hypothetical protein 1418726..1419139 Shewanella putrefaciens CN-32 5080989 YP_001182790.1 CDS Sputcn32_1263 NC_009438.1 1419270 1420004 D KEGG: bpa:BPP0522 hypothetical protein; hypothetical protein 1419270..1420004 Shewanella putrefaciens CN-32 5080990 YP_001182791.1 CDS Sputcn32_1264 NC_009438.1 1420167 1421144 D PFAM: protein of unknown function DUF1568; KEGG: son:SO1890 hypothetical protein; hypothetical protein 1420167..1421144 Shewanella putrefaciens CN-32 5080991 YP_001182792.1 CDS Sputcn32_1265 NC_009438.1 1421491 1422354 D PFAM: putative esterase; KEGG: sdn:Sden_3719 putative esterase; putative esterase 1421491..1422354 Shewanella putrefaciens CN-32 5080992 YP_001182793.1 CDS Sputcn32_1266 NC_009438.1 1422460 1422957 D PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3086 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1422460..1422957 Shewanella putrefaciens CN-32 5080993 YP_001182794.1 CDS Sputcn32_1267 NC_009438.1 1423427 1424605 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2812 AAA ATPase, central domain protein; ATPase central domain-containing protein complement(1423427..1424605) Shewanella putrefaciens CN-32 5080994 YP_001182795.1 CDS Sputcn32_1268 NC_009438.1 1425170 1425739 R PFAM: protein of unknown function DUF162; KEGG: she:Shewmr4_2738 protein of unknown function DUF162; hypothetical protein complement(1425170..1425739) Shewanella putrefaciens CN-32 5080995 YP_001182796.1 CDS Sputcn32_1269 NC_009438.1 1425741 1427135 R KEGG: shm:Shewmr7_2810 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1425741..1427135) Shewanella putrefaciens CN-32 5080996 YP_001182797.1 CDS Sputcn32_1270 NC_009438.1 1427146 1427889 R PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: she:Shewmr4_2736 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(1427146..1427889) Shewanella putrefaciens CN-32 5080997 YP_001182798.1 CDS Sputcn32_1271 NC_009438.1 1428202 1431006 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein complement(1428202..1431006) Shewanella putrefaciens CN-32 5080998 YP_001182799.1 CDS Sputcn32_1272 NC_009438.1 1431086 1432729 R PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease complement(1431086..1432729) Shewanella putrefaciens CN-32 5080999 YP_001182800.1 CDS ppnK NC_009438.1 1433576 1434505 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1433576..1434505) Shewanella putrefaciens CN-32 5081000 YP_001182801.1 CDS Sputcn32_1274 NC_009438.1 1434555 1435175 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 1434555..1435175 Shewanella putrefaciens CN-32 5081001 YP_001182802.1 CDS Sputcn32_1275 NC_009438.1 1435280 1437148 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1435280..1437148) Shewanella putrefaciens CN-32 5081002 YP_001182803.1 CDS Sputcn32_1276 NC_009438.1 1437170 1438051 R PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; polyprenyl synthetase complement(1437170..1438051) Shewanella putrefaciens CN-32 5081003 YP_001182804.1 CDS Sputcn32_1277 NC_009438.1 1438054 1438293 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: shm:Shewmr7_2802 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit complement(1438054..1438293) Shewanella putrefaciens CN-32 5081004 YP_001182805.1 CDS Sputcn32_1278 NC_009438.1 1438605 1439372 D Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA 1438605..1439372 Shewanella putrefaciens CN-32 5081005 YP_001182806.1 CDS motB NC_009438.1 1439376 1440302 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 1439376..1440302 Shewanella putrefaciens CN-32 5081006 YP_001182807.1 CDS Sputcn32_1280 NC_009438.1 1440516 1441970 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1440516..1441970 Shewanella putrefaciens CN-32 5081007 YP_001182808.1 CDS Sputcn32_1281 NC_009438.1 1442056 1442295 R KEGG: shm:Shewmr7_2796 hypothetical protein; hypothetical protein complement(1442056..1442295) Shewanella putrefaciens CN-32 5081008 YP_001182809.1 CDS Sputcn32_1282 NC_009438.1 1442473 1443384 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 1442473..1443384 Shewanella putrefaciens CN-32 5081009 YP_001182810.1 CDS Sputcn32_1283 NC_009438.1 1443365 1444039 D KEGG: shm:Shewmr7_2794 hypothetical protein; hypothetical protein 1443365..1444039 Shewanella putrefaciens CN-32 5081010 YP_001182811.1 CDS Sputcn32_1284 NC_009438.1 1444068 1444460 D PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein 1444068..1444460 Shewanella putrefaciens CN-32 5081011 YP_001182812.1 CDS Sputcn32_1285 NC_009438.1 1444638 1445723 D KEGG: she:Shewmr4_2721 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 1444638..1445723 Shewanella putrefaciens CN-32 5081012 YP_001182813.1 CDS Sputcn32_1286 NC_009438.1 1445822 1446832 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(1445822..1446832) Shewanella putrefaciens CN-32 5081013 YP_001182814.1 CDS Sputcn32_1287 NC_009438.1 1447086 1449911 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2719 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 1447086..1449911 Shewanella putrefaciens CN-32 5081014 YP_001182815.1 CDS Sputcn32_1288 NC_009438.1 1449994 1450419 R KEGG: she:Shewmr4_2717 hypothetical protein; hypothetical protein complement(1449994..1450419) Shewanella putrefaciens CN-32 5081015 YP_001182816.1 CDS xni NC_009438.1 1450530 1451318 R has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX complement(1450530..1451318) Shewanella putrefaciens CN-32 5081016 YP_001182817.1 CDS Sputcn32_1290 NC_009438.1 1451340 1452695 R PFAM: conserved hypothetical protein 730; KEGG: shm:Shewmr7_2783 conserved hypothetical protein 730; hypothetical protein complement(1451340..1452695) Shewanella putrefaciens CN-32 5081017 YP_001182818.1 CDS Sputcn32_1291 NC_009438.1 1452751 1454307 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2782 diguanylate cyclase; diguanylate cyclase complement(1452751..1454307) Shewanella putrefaciens CN-32 5081018 YP_001182819.1 CDS Sputcn32_1292 NC_009438.1 1454460 1456631 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2781 TPR repeat-containing protein; hypothetical protein complement(1454460..1456631) Shewanella putrefaciens CN-32 5081019 YP_001182820.1 CDS Sputcn32_1293 NC_009438.1 1456786 1458597 D PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: she:Shewmr4_2712 peptidase M61 domain protein; peptidase M61 domain-containing protein 1456786..1458597 Shewanella putrefaciens CN-32 5081020 YP_001182821.1 CDS rdgC NC_009438.1 1458679 1459593 R Required for efficient pilin antigenic variation; recombination associated protein complement(1458679..1459593) Shewanella putrefaciens CN-32 5081021 YP_001182822.1 CDS Sputcn32_1295 NC_009438.1 1459885 1460835 D PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2710 porin, gram-negative type; porin 1459885..1460835 Shewanella putrefaciens CN-32 5081022 YP_001182823.1 CDS Sputcn32_1296 NC_009438.1 1461022 1461711 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_2777 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1461022..1461711 Shewanella putrefaciens CN-32 5081023 YP_001182824.1 CDS Sputcn32_1297 NC_009438.1 1461791 1463089 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 1461791..1463089 Shewanella putrefaciens CN-32 5081024 YP_001182825.1 CDS Sputcn32_1298 NC_009438.1 1463316 1464287 D TIGRFAM: phosphate binding protein; KEGG: she:Shewmr4_2707 phosphate binding protein; phosphate binding protein 1463316..1464287 Shewanella putrefaciens CN-32 5081025 YP_001182826.1 CDS Sputcn32_1299 NC_009438.1 1464754 1466592 D PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 1464754..1466592 Shewanella putrefaciens CN-32 5081026 YP_001182827.1 CDS Sputcn32_1300 NC_009438.1 1467157 1467642 R PFAM: glutathione peroxidase; KEGG: she:Shewmr4_2705 glutathione peroxidase; glutathione peroxidase complement(1467157..1467642) Shewanella putrefaciens CN-32 5081027 YP_001182828.1 CDS Sputcn32_1301 NC_009438.1 1467706 1469160 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: she:Shewmr4_2704 MgtE intracellular region; magnesium transporter 1467706..1469160 Shewanella putrefaciens CN-32 5081028 YP_001182829.1 CDS Sputcn32_1302 NC_009438.1 1469205 1469726 D PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2703 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1469205..1469726 Shewanella putrefaciens CN-32 5081029 YP_001182830.1 CDS Sputcn32_1303 NC_009438.1 1469891 1470430 D PFAM: YfaZ family protein; KEGG: she:Shewmr4_2702 YfaZ family protein; hypothetical protein 1469891..1470430 Shewanella putrefaciens CN-32 5080930 YP_001182831.1 CDS Sputcn32_1304 NC_009438.1 1470728 1470925 R KEGG: she:Shewmr4_2698 hypothetical protein; hypothetical protein complement(1470728..1470925) Shewanella putrefaciens CN-32 5080931 YP_001182832.1 CDS Sputcn32_1305 NC_009438.1 1471175 1472566 R PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein complement(1471175..1472566) Shewanella putrefaciens CN-32 5080932 YP_001182833.1 CDS Sputcn32_1306 NC_009438.1 1472805 1473473 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: shm:Shewmr7_2764 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein complement(1472805..1473473) Shewanella putrefaciens CN-32 5080933 YP_001182834.1 CDS Sputcn32_1307 NC_009438.1 1473491 1474204 R KEGG: she:Shewmr4_2693 hypothetical protein; hypothetical protein complement(1473491..1474204) Shewanella putrefaciens CN-32 5080934 YP_001182835.1 CDS Sputcn32_1308 NC_009438.1 1474519 1476732 D TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1580 TonB-dependent heme receptor; TonB-dependent heme/hemoglobin receptor family protein 1474519..1476732 Shewanella putrefaciens CN-32 5080935 YP_001182836.1 CDS Sputcn32_1309 NC_009438.1 1476867 1477430 D PFAM: PhnA protein-like; SMART: PhnA protein N-terminal, proteobacterial; KEGG: son:SO1581 PhnA protein; PhnA-like protein 1476867..1477430 Shewanella putrefaciens CN-32 5080936 YP_001182837.1 CDS Sputcn32_1310 NC_009438.1 1477529 1478734 R PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_03550 putative MFS transporter; major facilitator superfamily transporter complement(1477529..1478734) Shewanella putrefaciens CN-32 5080937 YP_001182838.1 CDS Sputcn32_1311 NC_009438.1 1478965 1479543 D PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_2759 transcriptional regulator, MarR family; MarR family transcriptional regulator 1478965..1479543 Shewanella putrefaciens CN-32 5080938 YP_001182839.1 CDS Sputcn32_1312 NC_009438.1 1479669 1480682 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 1479669..1480682 Shewanella putrefaciens CN-32 5080939 YP_001182840.1 CDS Sputcn32_1313 NC_009438.1 1480688 1482715 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sdn:Sden_2638 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1480688..1482715) Shewanella putrefaciens CN-32 5080940 YP_001182841.1 CDS Sputcn32_1314 NC_009438.1 1482887 1483513 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1482887..1483513 Shewanella putrefaciens CN-32 5080941 YP_001182842.1 CDS Sputcn32_1315 NC_009438.1 1483624 1483866 R KEGG: she:Shewmr4_2686 hypothetical protein; hypothetical protein complement(1483624..1483866) Shewanella putrefaciens CN-32 5080942 YP_001182843.1 CDS Sputcn32_1316 NC_009438.1 1484197 1484985 D KEGG: son:SO1589 hypothetical protein; hypothetical protein 1484197..1484985 Shewanella putrefaciens CN-32 5080943 YP_001182844.1 CDS Sputcn32_1317 NC_009438.1 1485147 1485692 R PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_2744 transport-associated; transport-associated complement(1485147..1485692) Shewanella putrefaciens CN-32 5080944 YP_001182845.1 CDS Sputcn32_1318 NC_009438.1 1485920 1486369 R KEGG: shm:Shewmr7_2743 hypothetical protein; hypothetical protein complement(1485920..1486369) Shewanella putrefaciens CN-32 5080945 YP_001182846.1 CDS Sputcn32_1319 NC_009438.1 1486605 1487978 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2742 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 1486605..1487978 Shewanella putrefaciens CN-32 5080946 YP_001182847.1 CDS Sputcn32_1320 NC_009438.1 1488056 1489738 R PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: she:Shewmr4_2673 dual specificity protein phosphatase; hypothetical protein complement(1488056..1489738) Shewanella putrefaciens CN-32 5080947 YP_001182848.1 CDS Sputcn32_1321 NC_009438.1 1489890 1490084 R KEGG: shm:Shewmr7_2740 hypothetical protein; hypothetical protein complement(1489890..1490084) Shewanella putrefaciens CN-32 5080948 YP_001182849.1 CDS Sputcn32_1322 NC_009438.1 1490109 1490285 R PFAM: protein of unknown function DUF1328; KEGG: shm:Shewmr7_2739 protein of unknown function DUF1328; hypothetical protein complement(1490109..1490285) Shewanella putrefaciens CN-32 5080949 YP_001182850.1 CDS Sputcn32_1323 NC_009438.1 1490597 1492255 R KEGG: shm:Shewmr7_2736 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(1490597..1492255) Shewanella putrefaciens CN-32 5080950 YP_001182851.1 CDS Sputcn32_1324 NC_009438.1 1492360 1498317 R PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: she:Shewmr4_2668 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ complement(1492360..1498317) Shewanella putrefaciens CN-32 5080951 YP_001182852.1 CDS Sputcn32_1325 NC_009438.1 1498314 1500623 R KEGG: shm:Shewmr7_2734 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB complement(1498314..1500623) Shewanella putrefaciens CN-32 5080952 YP_001182853.1 CDS Sputcn32_1326 NC_009438.1 1500620 1508548 R PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_2733 beta-ketoacyl synthase; erythronolide synthase complement(1500620..1508548) Shewanella putrefaciens CN-32 5080953 YP_001182854.1 CDS Sputcn32_1327 NC_009438.1 1508545 1509414 R KEGG: shm:Shewmr7_2732 transcriptional regulator, putative; transcriptional regulator complement(1508545..1509414) Shewanella putrefaciens CN-32 5080954 YP_001182855.1 CDS Sputcn32_1328 NC_009438.1 1509807 1510730 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: shm:Shewmr7_2731 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 1509807..1510730 Shewanella putrefaciens CN-32 5080955 YP_001182856.1 CDS queF NC_009438.1 1510835 1511725 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1510835..1511725) Shewanella putrefaciens CN-32 5080956 YP_001182857.1 CDS Sputcn32_1330 NC_009438.1 1511752 1512402 D putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 1511752..1512402 Shewanella putrefaciens CN-32 5080957 YP_001182858.1 CDS Sputcn32_1331 NC_009438.1 1512520 1513293 R KEGG: son:SO1610 hypothetical protein; hypothetical protein complement(1512520..1513293) Shewanella putrefaciens CN-32 5080958 YP_001182859.1 CDS Sputcn32_1332 NC_009438.1 1513293 1513676 R KEGG: shm:Shewmr7_2725 hypothetical protein; hypothetical protein complement(1513293..1513676) Shewanella putrefaciens CN-32 5080959 YP_001182860.1 CDS Sputcn32_1333 NC_009438.1 1513822 1514217 D KEGG: shm:Shewmr7_2724 hypothetical protein; hypothetical protein 1513822..1514217 Shewanella putrefaciens CN-32 5080960 YP_001182861.1 CDS Sputcn32_1334 NC_009438.1 1514249 1514482 R KEGG: son:SO1613 hypothetical protein; hypothetical protein complement(1514249..1514482) Shewanella putrefaciens CN-32 5080961 YP_001182862.1 CDS Sputcn32_1335 NC_009438.1 1514633 1515271 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1514633..1515271 Shewanella putrefaciens CN-32 5080962 YP_001182863.1 CDS Sputcn32_1336 NC_009438.1 1516543 1516929 R KEGG: son:SO1617 hypothetical protein; hypothetical protein complement(1516543..1516929) Shewanella putrefaciens CN-32 5080963 YP_001182864.1 CDS Sputcn32_1337 NC_009438.1 1516926 1517939 R KEGG: she:Shewmr4_2652 hypothetical protein; hypothetical protein complement(1516926..1517939) Shewanella putrefaciens CN-32 5080964 YP_001182865.1 CDS Sputcn32_1338 NC_009438.1 1518089 1518409 D PFAM: protein of unknown function DUF446; KEGG: shm:Shewmr7_2718 protein of unknown function DUF446; hypothetical protein 1518089..1518409 Shewanella putrefaciens CN-32 5080965 YP_001182866.1 CDS Sputcn32_1339 NC_009438.1 1518411 1519238 D PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_2717 pseudouridylate synthase; pseudouridylate synthase 1518411..1519238 Shewanella putrefaciens CN-32 5080966 YP_001182867.1 CDS Sputcn32_1340 NC_009438.1 1519322 1519504 R hypothetical protein complement(1519322..1519504) Shewanella putrefaciens CN-32 5080967 YP_001182868.1 CDS Sputcn32_1341 NC_009438.1 1519629 1520093 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1519629..1520093 Shewanella putrefaciens CN-32 5080968 YP_001182869.1 CDS Sputcn32_1342 NC_009438.1 1520045 1521526 D TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: shm:Shewmr7_2715 PTS system, glucose-like IIB subunint; PTS system glucose-like transporter subunit IIB 1520045..1521526 Shewanella putrefaciens CN-32 5080969 YP_001182870.1 CDS purU NC_009438.1 1521641 1522591 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1521641..1522591 Shewanella putrefaciens CN-32 5080970 YP_001182871.1 CDS Sputcn32_1344 NC_009438.1 1522765 1524696 D KEGG: shm:Shewmr7_2713 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1522765..1524696 Shewanella putrefaciens CN-32 5080971 YP_001182872.1 CDS dapD NC_009438.1 1524766 1525590 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1524766..1525590) Shewanella putrefaciens CN-32 5080972 YP_001182873.1 CDS Sputcn32_1346 NC_009438.1 1525616 1528198 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1525616..1528198) Shewanella putrefaciens CN-32 5080973 YP_001182874.1 CDS Sputcn32_1347 NC_009438.1 1528221 1529057 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1528221..1529057) Shewanella putrefaciens CN-32 5080974 YP_001182875.1 CDS rpsB NC_009438.1 1529330 1530058 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1529330..1530058 Shewanella putrefaciens CN-32 5080975 YP_001182876.1 CDS tsf NC_009438.1 1530179 1531030 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1530179..1531030 Shewanella putrefaciens CN-32 5080976 YP_001182877.1 CDS pyrH NC_009438.1 1531099 1531836 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1531099..1531836 Shewanella putrefaciens CN-32 5080977 YP_001182878.1 CDS frr NC_009438.1 1531858 1532415 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1531858..1532415 Shewanella putrefaciens CN-32 5080978 YP_001182879.1 CDS Sputcn32_1352 NC_009438.1 1532498 1533325 D KEGG: son:SO1633 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1532498..1533325 Shewanella putrefaciens CN-32 5080979 YP_001182880.1 CDS Sputcn32_1353 NC_009438.1 1533346 1534203 D PFAM: phosphatidate cytidylyltransferase; KEGG: shm:Shewmr7_2703 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1533346..1534203 Shewanella putrefaciens CN-32 5080548 YP_001182881.1 CDS Sputcn32_1354 NC_009438.1 1534217 1535398 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1534217..1535398 Shewanella putrefaciens CN-32 5080549 YP_001182882.1 CDS Sputcn32_1355 NC_009438.1 1535441 1536811 D TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: shm:Shewmr7_2701 putative membrane-associated zinc metalloprotease; putative membrane-associated zinc metalloprotease 1535441..1536811 Shewanella putrefaciens CN-32 5080550 YP_001182883.1 CDS Sputcn32_1356 NC_009438.1 1536843 1539323 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: shm:Shewmr7_2700 surface antigen (D15); surface antigen (D15) 1536843..1539323 Shewanella putrefaciens CN-32 5080551 YP_001182884.1 CDS Sputcn32_1357 NC_009438.1 1539388 1539885 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: shm:Shewmr7_2699 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 1539388..1539885 Shewanella putrefaciens CN-32 5080552 YP_001182885.1 CDS lpxD NC_009438.1 1539889 1540914 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1539889..1540914 Shewanella putrefaciens CN-32 5080553 YP_001182886.1 CDS fabZ NC_009438.1 1540944 1541408 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1540944..1541408 Shewanella putrefaciens CN-32 5080554 YP_001182887.1 CDS Sputcn32_1360 NC_009438.1 1541405 1542175 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1541405..1542175 Shewanella putrefaciens CN-32 5080555 YP_001182888.1 CDS lpxB NC_009438.1 1542298 1543452 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1542298..1543452 Shewanella putrefaciens CN-32 5080556 YP_001182889.1 CDS rnhB NC_009438.1 1543455 1544084 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1543455..1544084 Shewanella putrefaciens CN-32 5080557 YP_001182890.1 CDS dnaE NC_009438.1 1544202 1547675 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1544202..1547675 Shewanella putrefaciens CN-32 5080558 YP_001182891.1 CDS Sputcn32_1364 NC_009438.1 1547735 1549132 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: she:Shewmr4_2625 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 1547735..1549132 Shewanella putrefaciens CN-32 5080559 YP_001182892.1 CDS Sputcn32_1365 NC_009438.1 1549195 1550073 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase complement(1549195..1550073) Shewanella putrefaciens CN-32 5080560 YP_001182893.1 CDS Sputcn32_1366 NC_009438.1 1550427 1550636 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2689 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(1550427..1550636) Shewanella putrefaciens CN-32 5080561 YP_001182894.1 CDS Sputcn32_1367 NC_009438.1 1551413 1553257 D PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2621 protein of unknown function DUF885; hypothetical protein 1551413..1553257 Shewanella putrefaciens CN-32 5080562 YP_001182895.1 CDS Sputcn32_1368 NC_009438.1 1553486 1556707 D PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2687 SNF2-related protein; SNF2-like protein 1553486..1556707 Shewanella putrefaciens CN-32 5080563 YP_001182896.1 CDS Sputcn32_1369 NC_009438.1 1556756 1557511 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: she:Shewmr4_2619 PHP C-terminal domain protein; putative hydrolase 1556756..1557511 Shewanella putrefaciens CN-32 5080564 YP_001182897.1 CDS Sputcn32_1370 NC_009438.1 1557605 1558426 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_2684 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 1557605..1558426 Shewanella putrefaciens CN-32 5080565 YP_001182898.1 CDS Sputcn32_1371 NC_009438.1 1558499 1559416 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1558499..1559416 Shewanella putrefaciens CN-32 5080566 YP_001182899.1 CDS Sputcn32_1372 NC_009438.1 1559564 1560259 D PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein 1559564..1560259 Shewanella putrefaciens CN-32 5080567 YP_001182900.1 CDS Sputcn32_1373 NC_009438.1 1560263 1560937 D KEGG: shm:Shewmr7_2681 hypothetical protein; hypothetical protein 1560263..1560937 Shewanella putrefaciens CN-32 5080568 YP_001182901.1 CDS Sputcn32_1374 NC_009438.1 1560984 1561253 D KEGG: son:SO0729 hypothetical protein; hypothetical protein 1560984..1561253 Shewanella putrefaciens CN-32 5080569 YP_001182902.1 CDS Sputcn32_1375 NC_009438.1 1561833 1562270 D PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_0928 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1561833..1562270 Shewanella putrefaciens CN-32 5080570 YP_001182903.1 CDS Sputcn32_1376 NC_009438.1 1562351 1563238 D KEGG: ccr:CC3235 hypothetical protein; hypothetical protein 1562351..1563238 Shewanella putrefaciens CN-32 5080571 YP_001182904.1 CDS Sputcn32_1378 NC_009438.1 1564622 1565065 D KEGG: son:SO2212 transposase, IS91 family, putative; IS91 family transposase 1564622..1565065 Shewanella putrefaciens CN-32 5080573 YP_001182905.1 CDS Sputcn32_1379 NC_009438.1 1565786 1566019 D hypothetical protein 1565786..1566019 Shewanella putrefaciens CN-32 5080574 YP_001182906.1 CDS Sputcn32_1380 NC_009438.1 1566825 1569122 R KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c complement(1566825..1569122) Shewanella putrefaciens CN-32 5080575 YP_001182907.1 CDS Sputcn32_1381 NC_009438.1 1569530 1570504 R PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1569530..1570504) Shewanella putrefaciens CN-32 5080576 YP_001182908.1 CDS Sputcn32_1382 NC_009438.1 1570820 1571233 R PFAM: protein of unknown function DUF583; KEGG: shm:Shewmr7_2678 protein of unknown function DUF583; hypothetical protein complement(1570820..1571233) Shewanella putrefaciens CN-32 5080577 YP_001182909.1 CDS Sputcn32_1383 NC_009438.1 1571322 1571828 R TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_2677 ferredoxin-type protein NapF; ferredoxin-type protein NapF complement(1571322..1571828) Shewanella putrefaciens CN-32 5080578 YP_001182910.1 CDS Sputcn32_1384 NC_009438.1 1571899 1572912 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: she:Shewmr4_2609 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1571899..1572912) Shewanella putrefaciens CN-32 5080579 YP_001182911.1 CDS Sputcn32_1385 NC_009438.1 1572912 1573820 R KEGG: shm:Shewmr7_2675 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase GalU complement(1572912..1573820) Shewanella putrefaciens CN-32 5080580 YP_001182912.1 CDS phhA NC_009438.1 1574132 1574932 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1574132..1574932 Shewanella putrefaciens CN-32 5080581 YP_001182913.1 CDS phhB NC_009438.1 1575027 1575365 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1575027..1575365 Shewanella putrefaciens CN-32 5080582 YP_001182914.1 CDS Sputcn32_1388 NC_009438.1 1575624 1577162 D PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_2672 transcriptional regulator, TyrR; transcriptional regulator TyrR 1575624..1577162 Shewanella putrefaciens CN-32 5080583 YP_001182915.1 CDS Sputcn32_1389 NC_009438.1 1577543 1578529 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1577543..1578529 Shewanella putrefaciens CN-32 5080584 YP_001182916.1 CDS Sputcn32_1390 NC_009438.1 1578616 1579266 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase 1578616..1579266 Shewanella putrefaciens CN-32 5080585 YP_001182917.1 CDS Sputcn32_1391 NC_009438.1 1579296 1579949 D PFAM: protein of unknown function DUF925; KEGG: she:Shewmr4_2602 protein of unknown function DUF925; hypothetical protein 1579296..1579949 Shewanella putrefaciens CN-32 5080586 YP_001182918.1 CDS Sputcn32_1392 NC_009438.1 1580321 1580968 D receptor for colicin S4; outer membrane protein W 1580321..1580968 Shewanella putrefaciens CN-32 5080587 YP_001182919.1 CDS Sputcn32_1393 NC_009438.1 1581048 1581791 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1674 short chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR complement(1581048..1581791) Shewanella putrefaciens CN-32 5080588 YP_001182920.1 CDS Sputcn32_1394 NC_009438.1 1581909 1582343 D KEGG: shm:Shewmr7_2666 hypothetical protein; hypothetical protein 1581909..1582343 Shewanella putrefaciens CN-32 5080589 YP_001182921.1 CDS Sputcn32_1395 NC_009438.1 1582410 1583366 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1582410..1583366 Shewanella putrefaciens CN-32 5080590 YP_001182922.1 CDS Sputcn32_1396 NC_009438.1 1583431 1585077 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VCA0220 hemolysin secretion protein HylB; methyl-accepting chemotaxis sensory transducer complement(1583431..1585077) Shewanella putrefaciens CN-32 5080591 YP_001182923.1 CDS Sputcn32_1397 NC_009438.1 1585513 1586703 D KEGG: shm:Shewmr7_2664 acetyl-CoA acetyltransferases; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 1585513..1586703 Shewanella putrefaciens CN-32 5080592 YP_001182924.1 CDS Sputcn32_1398 NC_009438.1 1586836 1588335 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2596 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1586836..1588335 Shewanella putrefaciens CN-32 5080593 YP_001182925.1 CDS Sputcn32_1399 NC_009438.1 1588423 1589580 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: shm:Shewmr7_2662 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1588423..1589580 Shewanella putrefaciens CN-32 5080594 YP_001182926.1 CDS Sputcn32_1400 NC_009438.1 1589640 1590413 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1589640..1590413 Shewanella putrefaciens CN-32 5080595 YP_001182927.1 CDS Sputcn32_1401 NC_009438.1 1590413 1591582 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: shm:Shewmr7_2660 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1590413..1591582 Shewanella putrefaciens CN-32 5080596 YP_001182928.1 CDS Sputcn32_1402 NC_009438.1 1591717 1592619 D KEGG: shm:Shewmr7_2659 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1591717..1592619 Shewanella putrefaciens CN-32 5080597 YP_001182929.1 CDS fabG NC_009438.1 1592644 1593402 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1592644..1593402 Shewanella putrefaciens CN-32 5079653 YP_001182930.1 CDS Sputcn32_1405 NC_009438.1 1593874 1594116 D KEGG: shm:Shewmr7_2657 hypothetical protein; hypothetical protein 1593874..1594116 Shewanella putrefaciens CN-32 5079655 YP_001182931.1 CDS Sputcn32_1406 NC_009438.1 1594177 1596207 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: she:Shewmr4_2589 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 1594177..1596207 Shewanella putrefaciens CN-32 5079656 YP_001182932.1 CDS Sputcn32_1407 NC_009438.1 1596215 1596616 R PFAM: regulatory protein, MerR; KEGG: she:Shewmr4_2588 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1596215..1596616) Shewanella putrefaciens CN-32 5079657 YP_001182933.1 CDS Sputcn32_1408 NC_009438.1 1596747 1598981 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: she:Shewmr4_2587 copper-translocating P-type ATPase; copper-translocating P-type ATPase 1596747..1598981 Shewanella putrefaciens CN-32 5079658 YP_001182934.1 CDS Sputcn32_1409 NC_009438.1 1599281 1600921 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_2653 ABC transporter related; ABC transporter-like protein 1599281..1600921 Shewanella putrefaciens CN-32 5079659 YP_001182935.1 CDS Sputcn32_1410 NC_009438.1 1601028 1601543 R PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: son:SO1691 lipoprotein Blc; lipocalin family protein complement(1601028..1601543) Shewanella putrefaciens CN-32 5079660 YP_001182936.1 CDS Sputcn32_1411 NC_009438.1 1601732 1604407 R PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: shm:Shewmr7_2650 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(1601732..1604407) Shewanella putrefaciens CN-32 5079661 YP_001182937.1 CDS Sputcn32_1412 NC_009438.1 1604514 1605533 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: she:Shewmr4_2582 diguanylate cyclase; PAS/PAC sensor-containing diguanylate cyclase complement(1604514..1605533) Shewanella putrefaciens CN-32 5079662 YP_001182938.1 CDS Sputcn32_1414 NC_009438.1 1606607 1606981 R KEGG: she:Shewmr4_2581 hypothetical protein; hypothetical protein complement(1606607..1606981) Shewanella putrefaciens CN-32 5079664 YP_001182939.1 CDS Sputcn32_1415 NC_009438.1 1607003 1610281 R PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2647 transcriptional regulator, CadC; transcriptional regulator CadC complement(1607003..1610281) Shewanella putrefaciens CN-32 5079665 YP_001182940.1 CDS Sputcn32_1416 NC_009438.1 1610679 1612007 R KEGG: son:SO1700 hypothetical protein; hypothetical protein complement(1610679..1612007) Shewanella putrefaciens CN-32 5079666 YP_001182941.1 CDS Sputcn32_1417 NC_009438.1 1612019 1612882 R KEGG: shm:Shewmr7_2645 hypothetical protein; hypothetical protein complement(1612019..1612882) Shewanella putrefaciens CN-32 5079667 YP_001182942.1 CDS Sputcn32_1418 NC_009438.1 1613381 1613728 D KEGG: shm:Shewmr7_2644 hypothetical protein; hypothetical protein 1613381..1613728 Shewanella putrefaciens CN-32 5079668 YP_001182943.1 CDS Sputcn32_1419 NC_009438.1 1613914 1614612 D PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_2643 transcriptional regulator, TetR family; TetR family transcriptional regulator 1613914..1614612 Shewanella putrefaciens CN-32 5079669 YP_001182944.1 CDS Sputcn32_1420 NC_009438.1 1614612 1615610 D PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_2575 secretion protein HlyD family protein; secretion protein HlyD family protein 1614612..1615610 Shewanella putrefaciens CN-32 5079670 YP_001182945.1 CDS Sputcn32_1421 NC_009438.1 1615607 1616560 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_2574 ABC transporter related; ABC transporter-like protein 1615607..1616560 Shewanella putrefaciens CN-32 5079671 YP_001182946.1 CDS Sputcn32_1422 NC_009438.1 1616550 1617671 D PFAM: ABC-2 type transporter; KEGG: shm:Shewmr7_2640 ABC-2 type transporter; ABC transporter 1616550..1617671 Shewanella putrefaciens CN-32 5079672 YP_001182947.1 CDS Sputcn32_1423 NC_009438.1 1617936 1619222 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 1617936..1619222 Shewanella putrefaciens CN-32 5079673 YP_001182948.1 CDS Sputcn32_1424 NC_009438.1 1619408 1619881 D KEGG: son:SO1710 hypothetical protein; hypothetical protein 1619408..1619881 Shewanella putrefaciens CN-32 5079674 YP_001182949.1 CDS Sputcn32_1425 NC_009438.1 1620004 1620534 D KEGG: son:SO1711 hypothetical protein; hypothetical protein 1620004..1620534 Shewanella putrefaciens CN-32 5079675 YP_001182950.1 CDS Sputcn32_1426 NC_009438.1 1620857 1622761 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppu:PP_5020 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1620857..1622761 Shewanella putrefaciens CN-32 5079676 YP_001182951.1 CDS Sputcn32_1427 NC_009438.1 1622862 1623350 R hypothetical protein complement(1622862..1623350) Shewanella putrefaciens CN-32 5079677 YP_001182952.1 CDS Sputcn32_1428 NC_009438.1 1623423 1623977 R PFAM: protein of unknown function DUF1415; KEGG: shm:Shewmr7_2635 protein of unknown function DUF1415; hypothetical protein complement(1623423..1623977) Shewanella putrefaciens CN-32 5079678 YP_001182953.1 CDS Sputcn32_1429 NC_009438.1 1624004 1624597 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: shm:Shewmr7_2634 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1624004..1624597) Shewanella putrefaciens CN-32 5079679 YP_001182954.1 CDS Sputcn32_1430 NC_009438.1 1625047 1625445 D KEGG: shm:Shewmr7_2632 hypothetical protein; hypothetical protein 1625047..1625445 Shewanella putrefaciens CN-32 5079680 YP_001182955.1 CDS Sputcn32_1431 NC_009438.1 1625567 1626139 R hypothetical protein complement(1625567..1626139) Shewanella putrefaciens CN-32 5079681 YP_001182956.1 CDS Sputcn32_1432 NC_009438.1 1626454 1627278 R KEGG: shm:Shewmr7_2631 hypothetical protein; hypothetical protein complement(1626454..1627278) Shewanella putrefaciens CN-32 5079682 YP_001182957.1 CDS Sputcn32_1433 NC_009438.1 1627537 1628037 R PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; amino acid-binding ACT domain-containing protein complement(1627537..1628037) Shewanella putrefaciens CN-32 5079683 YP_001182958.1 CDS Sputcn32_1434 NC_009438.1 1628236 1630494 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2627 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1628236..1630494 Shewanella putrefaciens CN-32 5079684 YP_001182959.1 CDS Sputcn32_1435 NC_009438.1 1630554 1632212 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2559 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 1630554..1632212 Shewanella putrefaciens CN-32 5079685 YP_001182960.1 CDS Sputcn32_1436 NC_009438.1 1632246 1633064 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1632246..1633064 Shewanella putrefaciens CN-32 5079686 YP_001182961.1 CDS Sputcn32_1437 NC_009438.1 1633138 1633848 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1633138..1633848 Shewanella putrefaciens CN-32 5079687 YP_001182962.1 CDS Sputcn32_1438 NC_009438.1 1634393 1636015 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL0610 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis sensory transducer 1634393..1636015 Shewanella putrefaciens CN-32 5079688 YP_001182963.1 CDS Sputcn32_1439 NC_009438.1 1636231 1636626 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1636231..1636626) Shewanella putrefaciens CN-32 5079689 YP_001182964.1 CDS Sputcn32_1440 NC_009438.1 1636787 1637371 D KEGG: son:SO1736 hypothetical protein; hypothetical protein 1636787..1637371 Shewanella putrefaciens CN-32 5079690 YP_001182965.1 CDS Sputcn32_1441 NC_009438.1 1637766 1639742 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: she:Shewmr4_2552 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 1637766..1639742 Shewanella putrefaciens CN-32 5079691 YP_001182966.1 CDS Sputcn32_1442 NC_009438.1 1639878 1640240 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein 1639878..1640240 Shewanella putrefaciens CN-32 5079692 YP_001182967.1 CDS Sputcn32_1443 NC_009438.1 1640261 1640494 R PFAM: protein of unknown function DUF1289; KEGG: shm:Shewmr7_2617 protein of unknown function DUF1289; hypothetical protein complement(1640261..1640494) Shewanella putrefaciens CN-32 5079693 YP_001182968.1 CDS Sputcn32_1444 NC_009438.1 1640711 1642009 D KEGG: son:SO1741 hypothetical protein; hypothetical protein 1640711..1642009 Shewanella putrefaciens CN-32 5079694 YP_001182969.1 CDS Sputcn32_1445 NC_009438.1 1642262 1643311 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1642262..1643311 Shewanella putrefaciens CN-32 5079695 YP_001182970.1 CDS Sputcn32_1446 NC_009438.1 1643408 1644319 D PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_2547 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 1643408..1644319 Shewanella putrefaciens CN-32 5079696 YP_001182971.1 CDS Sputcn32_1447 NC_009438.1 1644319 1646145 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1644319..1646145 Shewanella putrefaciens CN-32 5079697 YP_001182972.1 CDS Sputcn32_1448 NC_009438.1 1646295 1647422 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: shm:Shewmr7_2612 3-beta hydroxysteroid dehydrogenase/isomerase; 3-beta hydroxysteroid dehydrogenase/isomerase 1646295..1647422 Shewanella putrefaciens CN-32 5079698 YP_001182973.1 CDS Sputcn32_1449 NC_009438.1 1647462 1649225 R KEGG: pfo:Pfl_2272 hypothetical protein; hypothetical protein complement(1647462..1649225) Shewanella putrefaciens CN-32 5079699 YP_001182974.1 CDS Sputcn32_1450 NC_009438.1 1649533 1649781 D KEGG: shm:Shewmr7_2611 hypothetical protein; hypothetical protein 1649533..1649781 Shewanella putrefaciens CN-32 5079700 YP_001182975.1 CDS Sputcn32_1451 NC_009438.1 1650049 1651035 D PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative; integral membrane protein TerC 1650049..1651035 Shewanella putrefaciens CN-32 5079701 YP_001182976.1 CDS Sputcn32_1452 NC_009438.1 1651524 1652402 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1750 ABC transporter, ATP-binding protein; ABC transporter-like protein 1651524..1652402 Shewanella putrefaciens CN-32 5079702 YP_001182977.1 CDS Sputcn32_1453 NC_009438.1 1652415 1655972 D KEGG: son:SO1751 hypothetical protein; hypothetical protein 1652415..1655972 Shewanella putrefaciens CN-32 5079605 YP_001182978.1 CDS Sputcn32_1454 NC_009438.1 1656145 1657866 D PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: she:Shewmr4_2541 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 1656145..1657866 Shewanella putrefaciens CN-32 5079606 YP_001182979.1 CDS Sputcn32_1455 NC_009438.1 1658041 1658424 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: shm:Shewmr7_2607 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1658041..1658424 Shewanella putrefaciens CN-32 5079607 YP_001182980.1 CDS Sputcn32_1456 NC_009438.1 1658511 1658975 D PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein; transcription activator, effector binding 1658511..1658975 Shewanella putrefaciens CN-32 5079608 YP_001182981.1 CDS Sputcn32_1457 NC_009438.1 1659028 1659705 D PFAM: Helix-turn-helix, type 11 domain protein; KEGG: she:Shewmr4_2538 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein 1659028..1659705 Shewanella putrefaciens CN-32 5079609 YP_001182982.1 CDS Sputcn32_1458 NC_009438.1 1659685 1659987 R PFAM: branched-chain amino acid transport; KEGG: she:Shewmr4_2529 branched-chain amino acid transport; branched-chain amino acid transport complement(1659685..1659987) Shewanella putrefaciens CN-32 5079610 YP_001182983.1 CDS Sputcn32_1459 NC_009438.1 1659984 1660865 R PFAM: AzlC family protein; KEGG: she:Shewmr4_2528 AzlC family protein; AzlC family protein complement(1659984..1660865) Shewanella putrefaciens CN-32 5079611 YP_001182984.1 CDS Sputcn32_1460 NC_009438.1 1660994 1661830 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(1660994..1661830) Shewanella putrefaciens CN-32 5079612 YP_001182985.1 CDS Sputcn32_1461 NC_009438.1 1662019 1662675 R PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1763 streptogramin A acetyl transferase; hexapaptide repeat-containing transferase complement(1662019..1662675) Shewanella putrefaciens CN-32 5079613 YP_001182986.1 CDS Sputcn32_1462 NC_009438.1 1662706 1663221 R PFAM: protein of unknown function DUF1706; KEGG: son:SO1764 hypothetical protein; hypothetical protein complement(1662706..1663221) Shewanella putrefaciens CN-32 5079614 YP_001182987.1 CDS Sputcn32_1463 NC_009438.1 1663279 1663638 R KEGG: son:SO1765 hypothetical protein; hypothetical protein complement(1663279..1663638) Shewanella putrefaciens CN-32 5079615 YP_001182988.1 CDS Sputcn32_1464 NC_009438.1 1663793 1664752 D KEGG: cps:CPS_2655 hypothetical protein; hypothetical protein 1663793..1664752 Shewanella putrefaciens CN-32 5079616 YP_001182989.1 CDS Sputcn32_1465 NC_009438.1 1665128 1665943 R PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit complement(1665128..1665943) Shewanella putrefaciens CN-32 5079617 YP_001182990.1 CDS Sputcn32_1466 NC_009438.1 1665994 1666278 R PFAM: transposase IS3/IS911 family protein; KEGG: vpa:VP1788 putative transposase; transposase IS3/IS911 family protein complement(1665994..1666278) Shewanella putrefaciens CN-32 5079618 YP_001182991.1 CDS Sputcn32_1467 NC_009438.1 1666241 1666498 R KEGG: son:SO1765 hypothetical protein; hypothetical protein complement(1666241..1666498) Shewanella putrefaciens CN-32 5079619 YP_001182992.1 CDS Sputcn32_1468 NC_009438.1 1666827 1669565 R KEGG: mxa:MXAN_2894 hypothetical protein; hypothetical protein complement(1666827..1669565) Shewanella putrefaciens CN-32 5079620 YP_001182993.1 CDS Sputcn32_1469 NC_009438.1 1670175 1671824 R PFAM: Pyridoxal-dependent decarboxylase; KEGG: she:Shewmr4_2520 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase complement(1670175..1671824) Shewanella putrefaciens CN-32 5079621 YP_001182994.1 CDS Sputcn32_1470 NC_009438.1 1672058 1673242 R PFAM: glycerate kinase; KEGG: shm:Shewmr7_2587 glycerate kinase; glycerate kinase complement(1672058..1673242) Shewanella putrefaciens CN-32 5079622 YP_001182995.1 CDS Sputcn32_1471 NC_009438.1 1673302 1674660 R PFAM: Gluconate transporter; Citrate transporter; KEGG: shm:Shewmr7_2586 gluconate transporter; gluconate transporter complement(1673302..1674660) Shewanella putrefaciens CN-32 5079623 YP_001182996.1 CDS Sputcn32_1472 NC_009438.1 1674956 1675963 R PFAM: Catalase domain protein; KEGG: she:Shewmr4_2517 catalase domain protein; catalase domain-containing protein complement(1674956..1675963) Shewanella putrefaciens CN-32 5079624 YP_001182997.1 CDS Sputcn32_1473 NC_009438.1 1676088 1677329 R PFAM: sugar diacid recognition domain protein; KEGG: shm:Shewmr7_2584 transcriptional regulator, CdaR; transcriptional regulator CdaR complement(1676088..1677329) Shewanella putrefaciens CN-32 5079625 YP_001182998.1 CDS Sputcn32_1474 NC_009438.1 1677338 1678024 R KEGG: shm:Shewmr7_2582 phage SPO1 DNA polymerase domain protein; phage SPO1 DNA polymerase domain-containing protein complement(1677338..1678024) Shewanella putrefaciens CN-32 5079626 YP_001182999.1 CDS Sputcn32_1475 NC_009438.1 1678057 1678662 R KEGG: she:Shewmr4_2513 hypothetical protein; hypothetical protein complement(1678057..1678662) Shewanella putrefaciens CN-32 5079627 YP_001183000.1 CDS Sputcn32_1476 NC_009438.1 1678847 1680961 R KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein MtrB complement(1678847..1680961) Shewanella putrefaciens CN-32 5079628 YP_001183001.1 CDS Sputcn32_1477 NC_009438.1 1680974 1681978 R TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein complement(1680974..1681978) Shewanella putrefaciens CN-32 5079629 YP_001183002.1 CDS Sputcn32_1478 NC_009438.1 1682048 1684039 R KEGG: shm:Shewmr7_2578 decaheme cytochrome c; decaheme cytochrome c complement(1682048..1684039) Shewanella putrefaciens CN-32 5079630 YP_001183003.1 CDS Sputcn32_1479 NC_009438.1 1684430 1686931 R KEGG: son:SO1779 decaheme cytochrome c; hypothetical protein complement(1684430..1686931) Shewanella putrefaciens CN-32 5079631 YP_001183004.1 CDS Sputcn32_1480 NC_009438.1 1687770 1688009 D PFAM: FeoA family protein; KEGG: shm:Shewmr7_2573 FeoA family protein; FeoA family protein 1687770..1688009 Shewanella putrefaciens CN-32 5079632 YP_001183005.1 CDS Sputcn32_1481 NC_009438.1 1688002 1690296 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B 1688002..1690296 Shewanella putrefaciens CN-32 5079633 YP_001183006.1 CDS Sputcn32_1482 NC_009438.1 1690487 1692157 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1690487..1692157 Shewanella putrefaciens CN-32 5079634 YP_001183007.1 CDS Sputcn32_1483 NC_009438.1 1692257 1692853 R PFAM: protein of unknown function DUF1282; KEGG: she:Shewmr4_2502 protein of unknown function DUF1282; hypothetical protein complement(1692257..1692853) Shewanella putrefaciens CN-32 5079635 YP_001183008.1 CDS Sputcn32_1484 NC_009438.1 1693091 1693900 D PFAM: tRNA--hydroxylase; KEGG: she:Shewmr4_2501 tRNA--hydroxylase; tRNA--hydroxylase 1693091..1693900 Shewanella putrefaciens CN-32 5079636 YP_001183009.1 CDS Sputcn32_1485 NC_009438.1 1693971 1694696 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1693971..1694696) Shewanella putrefaciens CN-32 5079637 YP_001183010.1 CDS Sputcn32_1486 NC_009438.1 1694706 1695200 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1694706..1695200) Shewanella putrefaciens CN-32 5079638 YP_001183011.1 CDS cysS NC_009438.1 1695335 1696720 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1695335..1696720 Shewanella putrefaciens CN-32 5079639 YP_001183012.1 CDS Sputcn32_1488 NC_009438.1 1696856 1697710 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1696856..1697710) Shewanella putrefaciens CN-32 5079640 YP_001183013.1 CDS tig NC_009438.1 1698687 1699991 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1698687..1699991 Shewanella putrefaciens CN-32 5079644 YP_001183014.1 CDS clpP NC_009438.1 1700081 1700689 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1700081..1700689 Shewanella putrefaciens CN-32 5079645 YP_001183015.1 CDS clpX NC_009438.1 1700775 1702055 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1700775..1702055 Shewanella putrefaciens CN-32 5079646 YP_001183016.1 CDS Sputcn32_1492 NC_009438.1 1702188 1704545 D KEGG: shm:Shewmr7_2561 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1702188..1704545 Shewanella putrefaciens CN-32 5079647 YP_001183017.1 CDS Sputcn32_1493 NC_009438.1 1704805 1705077 D PFAM: histone family protein DNA-binding protein; KEGG: shm:Shewmr7_2560 histone family protein DNA-binding protein; histone family protein DNA-binding protein 1704805..1705077 Shewanella putrefaciens CN-32 5079648 YP_001183018.1 CDS Sputcn32_1494 NC_009438.1 1705305 1707161 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: she:Shewmr4_2491 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1705305..1707161 Shewanella putrefaciens CN-32 5079649 YP_001183019.1 CDS Sputcn32_1495 NC_009438.1 1707744 1708949 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(1707744..1708949) Shewanella putrefaciens CN-32 5079650 YP_001183020.1 CDS Sputcn32_1496 NC_009438.1 1709055 1709840 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1709055..1709840) Shewanella putrefaciens CN-32 5079651 YP_001183021.1 CDS Sputcn32_1497 NC_009438.1 1709821 1710828 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: shm:Shewmr7_2555 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase complement(1709821..1710828) Shewanella putrefaciens CN-32 5079652 YP_001183022.1 CDS Sputcn32_1498 NC_009438.1 1710832 1711722 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2554 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1710832..1711722) Shewanella putrefaciens CN-32 5079556 YP_001183023.1 CDS Sputcn32_1499 NC_009438.1 1711709 1712740 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_2485 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1711709..1712740) Shewanella putrefaciens CN-32 5079557 YP_001183024.1 CDS Sputcn32_1500 NC_009438.1 1712740 1714365 R PFAM: extracellular solute-binding protein, family 5; KEGG: shm:Shewmr7_2552 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1712740..1714365) Shewanella putrefaciens CN-32 5079558 YP_001183025.1 CDS Sputcn32_1501 NC_009438.1 1714435 1715523 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2551 transcriptional regulator, fis family; Fis family transcriptional regulator complement(1714435..1715523) Shewanella putrefaciens CN-32 5079559 YP_001183026.1 CDS Sputcn32_1502 NC_009438.1 1715701 1716384 D PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA 1715701..1716384 Shewanella putrefaciens CN-32 5079560 YP_001183027.1 CDS pspB NC_009438.1 1716408 1716641 D acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1716408..1716641 Shewanella putrefaciens CN-32 5079561 YP_001183028.1 CDS Sputcn32_1504 NC_009438.1 1716628 1717014 D PFAM: PspC domain protein; KEGG: shm:Shewmr7_2548 phage shock protein C, PspC; phage shock protein C, PspC 1716628..1717014 Shewanella putrefaciens CN-32 5079562 YP_001183029.1 CDS Sputcn32_1505 NC_009438.1 1717096 1718568 D PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: shm:Shewmr7_2547 protein of unknown function DUF463, YcjX family protein; hypothetical protein 1717096..1718568 Shewanella putrefaciens CN-32 5079563 YP_001183030.1 CDS Sputcn32_1506 NC_009438.1 1718565 1719797 D PFAM: conserved hypothetical protein 1620; KEGG: she:Shewmr4_2478 conserved hypothetical protein 1620; hypothetical protein 1718565..1719797 Shewanella putrefaciens CN-32 5079564 YP_001183031.1 CDS Sputcn32_1507 NC_009438.1 1720141 1721334 D KEGG: she:Shewmr4_2477 methionine gamma-lyase; TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; methionine gamma-lyase 1720141..1721334 Shewanella putrefaciens CN-32 5079565 YP_001183032.1 CDS Sputcn32_1508 NC_009438.1 1721560 1721943 D KEGG: shm:Shewmr7_2544 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA 1721560..1721943 Shewanella putrefaciens CN-32 5079566 YP_001183033.1 CDS Sputcn32_1509 NC_009438.1 1722371 1722661 R KEGG: son:SO1814 hypothetical protein; hypothetical protein complement(1722371..1722661) Shewanella putrefaciens CN-32 5079568 YP_001183034.1 CDS Sputcn32_1510 NC_009438.1 1722960 1723664 R KEGG: she:Shewmr4_2473 hypothetical protein; hypothetical protein complement(1722960..1723664) Shewanella putrefaciens CN-32 5079569 YP_001183035.1 CDS Sputcn32_1511 NC_009438.1 1723674 1724336 R KEGG: she:Shewmr4_2472 primosomal replication protein N'', putative; primosomal replication protein N'' complement(1723674..1724336) Shewanella putrefaciens CN-32 5079570 YP_001183036.1 CDS Sputcn32_1512 NC_009438.1 1724333 1725106 R PFAM: protein of unknown function DUF81; KEGG: shm:Shewmr7_2539 protein of unknown function DUF81; hypothetical protein complement(1724333..1725106) Shewanella putrefaciens CN-32 5079571 YP_001183037.1 CDS dinG NC_009438.1 1725116 1727188 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(1725116..1727188) Shewanella putrefaciens CN-32 5079572 YP_001183038.1 CDS Sputcn32_1514 NC_009438.1 1727288 1729681 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 1727288..1729681 Shewanella putrefaciens CN-32 5079573 YP_001183039.1 CDS Sputcn32_1515 NC_009438.1 1729902 1731110 D PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2468 porin, gram-negative type; porin 1729902..1731110 Shewanella putrefaciens CN-32 5079574 YP_001183040.1 CDS Sputcn32_1516 NC_009438.1 1731880 1734681 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1822 TonB-dependent receptor, putative; TonB-dependent receptor 1731880..1734681 Shewanella putrefaciens CN-32 5079575 YP_001183041.1 CDS Sputcn32_1517 NC_009438.1 1735113 1735895 D KEGG: shm:Shewmr7_2534 hypothetical protein; hypothetical protein 1735113..1735895 Shewanella putrefaciens CN-32 5079576 YP_001183042.1 CDS Sputcn32_1518 NC_009438.1 1735895 1737250 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2533 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1735895..1737250 Shewanella putrefaciens CN-32 5079577 YP_001183043.1 CDS Sputcn32_1519 NC_009438.1 1737250 1737777 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: she:Shewmr4_2462 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1737250..1737777 Shewanella putrefaciens CN-32 5079578 YP_001183044.1 CDS Sputcn32_1520 NC_009438.1 1737791 1738195 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: shm:Shewmr7_2531 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1737791..1738195 Shewanella putrefaciens CN-32 5079579 YP_001183045.1 CDS Sputcn32_1521 NC_009438.1 1738197 1738817 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: shm:Shewmr7_2530 TonB family protein; TonB family protein 1738197..1738817 Shewanella putrefaciens CN-32 5079580 YP_001183046.1 CDS Sputcn32_1522 NC_009438.1 1738820 1740064 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2529 TPR repeat-containing protein; hypothetical protein 1738820..1740064 Shewanella putrefaciens CN-32 5079581 YP_001183047.1 CDS Sputcn32_1523 NC_009438.1 1740132 1740641 R PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein; diguanylate cyclase complement(1740132..1740641) Shewanella putrefaciens CN-32 5079582 YP_001183048.1 CDS Sputcn32_1524 NC_009438.1 1740721 1742550 D PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2457 protein of unknown function DUF885; hypothetical protein 1740721..1742550 Shewanella putrefaciens CN-32 5079583 YP_001183049.1 CDS Sputcn32_1525 NC_009438.1 1742728 1743006 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: shm:Shewmr7_2526 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1742728..1743006 Shewanella putrefaciens CN-32 5079584 YP_001183050.1 CDS Sputcn32_1526 NC_009438.1 1743074 1743610 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1743074..1743610 Shewanella putrefaciens CN-32 5079585 YP_001183051.1 CDS Sputcn32_1527 NC_009438.1 1743765 1744004 D KEGG: shm:Shewmr7_2524 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 1743765..1744004 Shewanella putrefaciens CN-32 5079586 YP_001183052.1 CDS Sputcn32_1528 NC_009438.1 1744027 1744416 D PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein 1744027..1744416 Shewanella putrefaciens CN-32 5079587 YP_001183053.1 CDS Sputcn32_1529 NC_009438.1 1744611 1745516 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2522 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1744611..1745516) Shewanella putrefaciens CN-32 5079588 YP_001183054.1 CDS Sputcn32_1530 NC_009438.1 1745674 1746447 D PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein 1745674..1746447 Shewanella putrefaciens CN-32 5079589 YP_001183055.1 CDS Sputcn32_1531 NC_009438.1 1746830 1747975 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: shm:Shewmr7_2520 nuclease SbcCD, D subunit; nuclease SbcCD subunit D 1746830..1747975 Shewanella putrefaciens CN-32 5079590 YP_001183056.1 CDS Sputcn32_1532 NC_009438.1 1747972 1751028 D PFAM: SMC domain protein; KEGG: she:Shewmr4_2449 SMC domain protein; SMC domain-containing protein 1747972..1751028 Shewanella putrefaciens CN-32 5079591 YP_001183057.1 CDS Sputcn32_1533 NC_009438.1 1751294 1752589 D PFAM: peptidase M23B; Opacity-associated protein A; KEGG: shm:Shewmr7_2518 peptidase M23B; peptidase M23B 1751294..1752589 Shewanella putrefaciens CN-32 5079592 YP_001183058.1 CDS Sputcn32_1534 NC_009438.1 1752914 1753384 R KEGG: son:SO2841 hypothetical protein; hypothetical protein complement(1752914..1753384) Shewanella putrefaciens CN-32 5079593 YP_001183059.1 CDS Sputcn32_1535 NC_009438.1 1753482 1753991 R PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein complement(1753482..1753991) Shewanella putrefaciens CN-32 5079594 YP_001183060.1 CDS Sputcn32_1536 NC_009438.1 1754033 1754470 R KEGG: son:SO2839 hypothetical protein; hypothetical protein complement(1754033..1754470) Shewanella putrefaciens CN-32 5079595 YP_001183061.1 CDS Sputcn32_1537 NC_009438.1 1754610 1755959 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: she:Shewmr4_2444 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1754610..1755959) Shewanella putrefaciens CN-32 5079596 YP_001183062.1 CDS Sputcn32_1538 NC_009438.1 1756206 1757168 D PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin 1756206..1757168 Shewanella putrefaciens CN-32 5079597 YP_001183063.1 CDS Sputcn32_1539 NC_009438.1 1757255 1757944 D KEGG: shm:Shewmr7_2512 hypothetical protein; hypothetical protein 1757255..1757944 Shewanella putrefaciens CN-32 5079598 YP_001183064.1 CDS Sputcn32_1540 NC_009438.1 1758212 1760329 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1758212..1760329 Shewanella putrefaciens CN-32 5079599 YP_001183065.1 CDS nrdG NC_009438.1 1760445 1760906 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1760445..1760906 Shewanella putrefaciens CN-32 5079600 YP_001183066.1 CDS Sputcn32_1542 NC_009438.1 1761021 1761377 D KEGG: she:Shewmr4_2439 hypothetical protein; hypothetical protein 1761021..1761377 Shewanella putrefaciens CN-32 5079601 YP_001183067.1 CDS ribA NC_009438.1 1761633 1762244 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1761633..1762244 Shewanella putrefaciens CN-32 5079602 YP_001183068.1 CDS Sputcn32_1544 NC_009438.1 1762341 1763207 D KEGG: son:SO2830 hypothetical protein; hypothetical protein 1762341..1763207 Shewanella putrefaciens CN-32 5079603 YP_001183069.1 CDS Sputcn32_1545 NC_009438.1 1763302 1763754 R KEGG: son:SO2829 hypothetical protein; hypothetical protein complement(1763302..1763754) Shewanella putrefaciens CN-32 5079604 YP_001183070.1 CDS Sputcn32_1546 NC_009438.1 1763907 1764275 R KEGG: she:Shewmr4_2434 hypothetical protein; hypothetical protein complement(1763907..1764275) Shewanella putrefaciens CN-32 5079506 YP_001183071.1 CDS Sputcn32_1547 NC_009438.1 1764414 1765862 R PFAM: carbon starvation protein CstA; KEGG: she:Shewmr4_2433 carbon starvation protein CstA; carbon starvation protein CstA complement(1764414..1765862) Shewanella putrefaciens CN-32 5079507 YP_001183072.1 CDS Sputcn32_1548 NC_009438.1 1766025 1766735 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(1766025..1766735) Shewanella putrefaciens CN-32 5079508 YP_001183073.1 CDS Sputcn32_1549 NC_009438.1 1766732 1768414 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS complement(1766732..1768414) Shewanella putrefaciens CN-32 5079509 YP_001183074.1 CDS Sputcn32_1550 NC_009438.1 1768543 1768785 D KEGG: shm:Shewmr7_2500 hypothetical protein; hypothetical protein 1768543..1768785 Shewanella putrefaciens CN-32 5079510 YP_001183075.1 CDS Sputcn32_1551 NC_009438.1 1768870 1769211 R KEGG: shm:Shewmr7_2499 RepA domain protein; RepA domain-containing protein complement(1768870..1769211) Shewanella putrefaciens CN-32 5079511 YP_001183076.1 CDS Sputcn32_1552 NC_009438.1 1769198 1769866 R KEGG: son:SO2808 hypothetical protein; hypothetical protein complement(1769198..1769866) Shewanella putrefaciens CN-32 5079512 YP_001183077.1 CDS Sputcn32_1553 NC_009438.1 1769944 1770246 R PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_2497 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1769944..1770246) Shewanella putrefaciens CN-32 5079513 YP_001183078.1 CDS Sputcn32_1554 NC_009438.1 1770401 1770805 R PFAM: phosphate-starvation-inducible E; KEGG: shm:Shewmr7_2496 phosphate-starvation-inducible E; phosphate-starvation-inducible E complement(1770401..1770805) Shewanella putrefaciens CN-32 5079514 YP_001183079.1 CDS Sputcn32_1555 NC_009438.1 1771089 1771598 R KEGG: shm:Shewmr7_2494 hypothetical protein; hypothetical protein complement(1771089..1771598) Shewanella putrefaciens CN-32 5079515 YP_001183080.1 CDS Sputcn32_1556 NC_009438.1 1771630 1773954 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: shm:Shewmr7_2493 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1771630..1773954 Shewanella putrefaciens CN-32 5079516 YP_001183081.1 CDS Sputcn32_1557 NC_009438.1 1773987 1775795 D KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 1773987..1775795 Shewanella putrefaciens CN-32 5079517 YP_001183082.1 CDS lpxK NC_009438.1 1775796 1776809 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1775796..1776809 Shewanella putrefaciens CN-32 5079518 YP_001183083.1 CDS Sputcn32_1559 NC_009438.1 1776796 1776975 D PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein 1776796..1776975 Shewanella putrefaciens CN-32 5079519 YP_001183084.1 CDS Sputcn32_1560 NC_009438.1 1777036 1777500 R KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein complement(1777036..1777500) Shewanella putrefaciens CN-32 5079520 YP_001183085.1 CDS Sputcn32_1561 NC_009438.1 1777651 1778340 D KEGG: she:Shewmr4_2418 hypothetical protein; hypothetical protein 1777651..1778340 Shewanella putrefaciens CN-32 5079521 YP_001183086.1 CDS Sputcn32_1562 NC_009438.1 1778398 1778754 R PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin complement(1778398..1778754) Shewanella putrefaciens CN-32 5079522 YP_001183087.1 CDS Sputcn32_1563 NC_009438.1 1779045 1782308 R PFAM: protein of unknown function DUF748; KEGG: she:Shewmr4_2416 protein of unknown function DUF748; hypothetical protein complement(1779045..1782308) Shewanella putrefaciens CN-32 5079523 YP_001183088.1 CDS Sputcn32_1564 NC_009438.1 1782544 1782924 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2795 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(1782544..1782924) Shewanella putrefaciens CN-32 5079524 YP_001183089.1 CDS Sputcn32_1565 NC_009438.1 1783296 1784000 D KEGG: she:Shewmr4_2414 hypothetical protein; hypothetical protein 1783296..1784000 Shewanella putrefaciens CN-32 5079525 YP_001183090.1 CDS Sputcn32_1566 NC_009438.1 1784102 1784452 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: she:Shewmr4_2413 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1784102..1784452 Shewanella putrefaciens CN-32 5079526 YP_001183091.1 CDS Sputcn32_1567 NC_009438.1 1784427 1784639 D PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein 1784427..1784639 Shewanella putrefaciens CN-32 5079527 YP_001183092.1 CDS Sputcn32_1568 NC_009438.1 1784679 1785569 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(1784679..1785569) Shewanella putrefaciens CN-32 5079528 YP_001183093.1 CDS sbcB NC_009438.1 1785735 1787147 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(1785735..1787147) Shewanella putrefaciens CN-32 5079529 YP_001183094.1 CDS Sputcn32_1570 NC_009438.1 1787326 1788126 D KEGG: son:SO2789 hypothetical protein; hypothetical protein 1787326..1788126 Shewanella putrefaciens CN-32 5079530 YP_001183095.1 CDS rrmA NC_009438.1 1788167 1788982 D methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1788167..1788982 Shewanella putrefaciens CN-32 5079531 YP_001183096.1 CDS Sputcn32_1572 NC_009438.1 1789282 1789491 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: shm:Shewmr7_2477 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 1789282..1789491 Shewanella putrefaciens CN-32 5079532 YP_001183097.1 CDS Sputcn32_1573 NC_009438.1 1790320 1793706 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: she:Shewmr4_2405 ribonuclease, Rne/Rng family; ribonuclease complement(1790320..1793706) Shewanella putrefaciens CN-32 5079533 YP_001183098.1 CDS Sputcn32_1574 NC_009438.1 1794215 1795207 D KEGG: shm:Shewmr7_2474 pseudouridine synthase, RluA family; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1794215..1795207 Shewanella putrefaciens CN-32 5079534 YP_001183099.1 CDS Sputcn32_1575 NC_009438.1 1795230 1795946 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_2403 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 1795230..1795946 Shewanella putrefaciens CN-32 5079535 YP_001183100.1 CDS Sputcn32_1576 NC_009438.1 1796110 1796724 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein complement(1796110..1796724) Shewanella putrefaciens CN-32 5079536 YP_001183101.1 CDS Sputcn32_1577 NC_009438.1 1796957 1797481 D PFAM: protein of unknown function DUF177; KEGG: shm:Shewmr7_2471 protein of unknown function DUF177; hypothetical protein 1796957..1797481 Shewanella putrefaciens CN-32 5079537 YP_001183102.1 CDS rpmF NC_009438.1 1797499 1797669 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1797499..1797669 Shewanella putrefaciens CN-32 5079538 YP_001183103.1 CDS Sputcn32_1579 NC_009438.1 1797685 1798713 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1797685..1798713 Shewanella putrefaciens CN-32 5079539 YP_001183104.1 CDS Sputcn32_1580 NC_009438.1 1798723 1799682 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1798723..1799682 Shewanella putrefaciens CN-32 5079540 YP_001183105.1 CDS Sputcn32_1581 NC_009438.1 1799770 1800696 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: shm:Shewmr7_2467 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 1799770..1800696 Shewanella putrefaciens CN-32 5079541 YP_001183106.1 CDS Sputcn32_1582 NC_009438.1 1800706 1801452 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1800706..1801452 Shewanella putrefaciens CN-32 5079542 YP_001183107.1 CDS acpP NC_009438.1 1801617 1801850 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1801617..1801850 Shewanella putrefaciens CN-32 5079543 YP_001183108.1 CDS Sputcn32_1584 NC_009438.1 1802076 1803314 D PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; beta-ketoacyl synthase 1802076..1803314 Shewanella putrefaciens CN-32 5079544 YP_001183109.1 CDS Sputcn32_1585 NC_009438.1 1803478 1803846 D KEGG: shm:Shewmr7_2463 hypothetical protein; hypothetical protein 1803478..1803846 Shewanella putrefaciens CN-32 5079545 YP_001183110.1 CDS Sputcn32_1586 NC_009438.1 1803965 1804444 D PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2462 thioesterase superfamily protein; thioesterase superfamily protein 1803965..1804444 Shewanella putrefaciens CN-32 5079546 YP_001183111.1 CDS Sputcn32_1587 NC_009438.1 1804752 1805627 D PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: she:Shewmr4_2391 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 1804752..1805627 Shewanella putrefaciens CN-32 5079547 YP_001183112.1 CDS Sputcn32_1588 NC_009438.1 1805746 1806594 R PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_2460 aldose 1-epimerase; aldose 1-epimerase complement(1805746..1806594) Shewanella putrefaciens CN-32 5079548 YP_001183113.1 CDS Sputcn32_1589 NC_009438.1 1806842 1808632 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: she:Shewmr4_2387 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1806842..1808632 Shewanella putrefaciens CN-32 5079549 YP_001183114.1 CDS Sputcn32_1590 NC_009438.1 1808942 1811155 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2386 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1808942..1811155 Shewanella putrefaciens CN-32 5079550 YP_001183115.1 CDS Sputcn32_1591 NC_009438.1 1811398 1812549 D PFAM: Patatin; KEGG: she:Shewmr4_2385 patatin; patatin 1811398..1812549 Shewanella putrefaciens CN-32 5079551 YP_001183116.1 CDS asnB NC_009438.1 1812741 1814405 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(1812741..1814405) Shewanella putrefaciens CN-32 5079552 YP_001183117.1 CDS Sputcn32_1593 NC_009438.1 1814988 1816661 R PFAM: peptidase M28; KEGG: shm:Shewmr7_2455 peptidase M28; peptidase M28 complement(1814988..1816661) Shewanella putrefaciens CN-32 5079553 YP_001183118.1 CDS Sputcn32_1594 NC_009438.1 1816862 1817608 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase complement(1816862..1817608) Shewanella putrefaciens CN-32 5079554 YP_001183119.1 CDS purN NC_009438.1 1817765 1818409 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1817765..1818409) Shewanella putrefaciens CN-32 5079555 YP_001183120.1 CDS Sputcn32_1596 NC_009438.1 1818409 1819446 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1818409..1819446) Shewanella putrefaciens CN-32 5079412 YP_001183121.1 CDS upp NC_009438.1 1819779 1820405 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1819779..1820405 Shewanella putrefaciens CN-32 5079413 YP_001183122.1 CDS Sputcn32_1598 NC_009438.1 1820531 1821850 R PFAM: Gluconate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC complement(1820531..1821850) Shewanella putrefaciens CN-32 5079414 YP_001183123.1 CDS Sputcn32_1599 NC_009438.1 1822237 1822842 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_2448 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 1822237..1822842 Shewanella putrefaciens CN-32 5079415 YP_001183124.1 CDS Sputcn32_1600 NC_009438.1 1822925 1823599 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1822925..1823599) Shewanella putrefaciens CN-32 5079416 YP_001183125.1 CDS Sputcn32_1601 NC_009438.1 1823742 1824611 D PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_2374 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1823742..1824611 Shewanella putrefaciens CN-32 5079417 YP_001183126.1 CDS Sputcn32_1602 NC_009438.1 1825167 1827356 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: shm:Shewmr7_2445 prolyl oligopeptidase; prolyl oligopeptidase 1825167..1827356 Shewanella putrefaciens CN-32 5079418 YP_001183127.1 CDS Sputcn32_1603 NC_009438.1 1827526 1827927 D TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2444 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 1827526..1827927 Shewanella putrefaciens CN-32 5079419 YP_001183128.1 CDS Sputcn32_1604 NC_009438.1 1827917 1828603 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: shm:Shewmr7_2443 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1827917..1828603 Shewanella putrefaciens CN-32 5079420 YP_001183129.1 CDS Sputcn32_1605 NC_009438.1 1828603 1829037 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: she:Shewmr4_2370 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1828603..1829037 Shewanella putrefaciens CN-32 5079421 YP_001183130.1 CDS Sputcn32_1606 NC_009438.1 1829038 1830027 D PFAM: TolA family protein; KEGG: she:Shewmr4_2369 TolA family protein; TolA family protein 1829038..1830027 Shewanella putrefaciens CN-32 5079422 YP_001183131.1 CDS tolB NC_009438.1 1830037 1831365 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1830037..1831365 Shewanella putrefaciens CN-32 5079423 YP_001183132.1 CDS Sputcn32_1608 NC_009438.1 1831412 1831948 D TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: shm:Shewmr7_2439 OmpA/MotB domain protein; OmpA domain-containing protein 1831412..1831948 Shewanella putrefaciens CN-32 5079424 YP_001183133.1 CDS Sputcn32_1609 NC_009438.1 1831973 1832722 D TIGRFAM: Tetratricopeptide domain protein; KEGG: shm:Shewmr7_2438 hypothetical protein; hypothetical protein 1831973..1832722 Shewanella putrefaciens CN-32 5079425 YP_001183134.1 CDS Sputcn32_1610 NC_009438.1 1833636 1834391 R KEGG: shm:Shewmr7_1590 hypothetical protein; hypothetical protein complement(1833636..1834391) Shewanella putrefaciens CN-32 5079432 YP_001183135.1 CDS cpdB NC_009438.1 1834595 1836661 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(1834595..1836661) Shewanella putrefaciens CN-32 5079433 YP_001183136.1 CDS Sputcn32_1612 NC_009438.1 1837369 1839513 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_1592 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 1837369..1839513 Shewanella putrefaciens CN-32 5079434 YP_001183137.1 CDS Sputcn32_1613 NC_009438.1 1839732 1840355 D SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: shm:Shewmr7_1593 prolyl 4-hydroxylase, alpha subunit; prolyl 4-hydroxylase subunit alpha 1839732..1840355 Shewanella putrefaciens CN-32 5079435 YP_001183138.1 CDS Sputcn32_1614 NC_009438.1 1840709 1841311 D PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1594 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1840709..1841311 Shewanella putrefaciens CN-32 5079436 YP_001183139.1 CDS Sputcn32_1615 NC_009438.1 1841344 1841808 D PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1595 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1841344..1841808 Shewanella putrefaciens CN-32 5079437 YP_001183140.1 CDS Sputcn32_1616 NC_009438.1 1841846 1842241 D KEGG: shm:Shewmr7_1596 hypothetical protein; hypothetical protein 1841846..1842241 Shewanella putrefaciens CN-32 5079438 YP_001183141.1 CDS Sputcn32_1617 NC_009438.1 1842397 1842795 D KEGG: shm:Shewmr7_1597 hypothetical protein; hypothetical protein 1842397..1842795 Shewanella putrefaciens CN-32 5079439 YP_001183142.1 CDS Sputcn32_1618 NC_009438.1 1842808 1843614 R KEGG: son:SO1839 hypothetical protein; hypothetical protein complement(1842808..1843614) Shewanella putrefaciens CN-32 5079440 YP_001183143.1 CDS Sputcn32_1619 NC_009438.1 1843751 1844842 D KEGG: son:SO1840 hypothetical protein; hypothetical protein 1843751..1844842 Shewanella putrefaciens CN-32 5079441 YP_001183144.1 CDS Sputcn32_1620 NC_009438.1 1844829 1845992 D KEGG: shm:Shewmr7_1599 hypothetical protein; hypothetical protein 1844829..1845992 Shewanella putrefaciens CN-32 5079442 YP_001183145.1 CDS Sputcn32_1621 NC_009438.1 1845992 1846507 D KEGG: shm:Shewmr7_1600 hypothetical protein; hypothetical protein 1845992..1846507 Shewanella putrefaciens CN-32 5079443 YP_001183146.1 CDS Sputcn32_1622 NC_009438.1 1846801 1849635 D PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; endonuclease/exonuclease/phosphatase 1846801..1849635 Shewanella putrefaciens CN-32 5079444 YP_001183147.1 CDS Sputcn32_1623 NC_009438.1 1849955 1850212 D hypothetical protein 1849955..1850212 Shewanella putrefaciens CN-32 5079445 YP_001183148.1 CDS Sputcn32_1624 NC_009438.1 1850457 1851164 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO2528 site-specific recombinase, phage integrase family; phage integrase family protein 1850457..1851164 Shewanella putrefaciens CN-32 5079446 YP_001183149.1 CDS Sputcn32_1625 NC_009438.1 1851299 1852360 D PFAM: putative transposase; KEGG: son:SO2212 transposase, IS91 family, putative; putative transposase 1851299..1852360 Shewanella putrefaciens CN-32 5079447 YP_001183150.1 CDS Sputcn32_1626 NC_009438.1 1853530 1853895 D hypothetical protein 1853530..1853895 Shewanella putrefaciens CN-32 5079448 YP_001183151.1 CDS Sputcn32_1627 NC_009438.1 1854700 1855092 D KEGG: son:SO1845 hypothetical protein; hypothetical protein 1854700..1855092 Shewanella putrefaciens CN-32 5079449 YP_001183152.1 CDS Sputcn32_1628 NC_009438.1 1855290 1856186 R KEGG: shm:Shewmr7_1603 hypothetical protein; hypothetical protein complement(1855290..1856186) Shewanella putrefaciens CN-32 5079450 YP_001183153.1 CDS Sputcn32_1629 NC_009438.1 1856198 1856956 R KEGG: she:Shewmr4_1537 hypothetical protein; hypothetical protein complement(1856198..1856956) Shewanella putrefaciens CN-32 5079451 YP_001183154.1 CDS Sputcn32_1630 NC_009438.1 1856956 1857486 R KEGG: son:SO1849 hypothetical protein; hypothetical protein complement(1856956..1857486) Shewanella putrefaciens CN-32 5079452 YP_001183155.1 CDS Sputcn32_1631 NC_009438.1 1857509 1857793 R PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(1857509..1857793) Shewanella putrefaciens CN-32 5079453 YP_001183156.1 CDS rlmL NC_009438.1 1859003 1861132 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1859003..1861132 Shewanella putrefaciens CN-32 5079374 YP_001183157.1 CDS Sputcn32_1633 NC_009438.1 1861125 1861388 D PFAM: glutaredoxin 2; KEGG: she:Shewmr4_1541 glutaredoxin 2; glutaredoxin 1861125..1861388 Shewanella putrefaciens CN-32 5079375 YP_001183158.1 CDS Sputcn32_1634 NC_009438.1 1861390 1863315 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1861390..1863315 Shewanella putrefaciens CN-32 5079376 YP_001183159.1 CDS Sputcn32_1635 NC_009438.1 1863344 1865173 D KEGG: shm:Shewmr7_1610 hypothetical protein; hypothetical protein 1863344..1865173 Shewanella putrefaciens CN-32 5079377 YP_001183160.1 CDS Sputcn32_1636 NC_009438.1 1865360 1865536 D PFAM: ribosome modulation factor; KEGG: shm:Shewmr7_1611 ribosome modulation factor; ribosome modulation factor 1865360..1865536 Shewanella putrefaciens CN-32 5079378 YP_001183161.1 CDS Sputcn32_1637 NC_009438.1 1865643 1866158 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1865643..1866158) Shewanella putrefaciens CN-32 5079379 YP_001183162.1 CDS Sputcn32_1638 NC_009438.1 1866233 1867966 R KEGG: shm:Shewmr7_1613 conserved hypothetical ATP-dependent protease; ATP-dependent protease complement(1866233..1867966) Shewanella putrefaciens CN-32 5079380 YP_001183163.1 CDS Sputcn32_1639 NC_009438.1 1869104 1869784 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1869104..1869784 Shewanella putrefaciens CN-32 5079383 YP_001183164.1 CDS uvrC NC_009438.1 1869851 1871680 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1869851..1871680 Shewanella putrefaciens CN-32 5079384 YP_001183165.1 CDS Sputcn32_1641 NC_009438.1 1871728 1872276 D KEGG: she:Shewmr4_1549 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1871728..1872276 Shewanella putrefaciens CN-32 5079385 YP_001183166.1 CDS Sputcn32_1642 NC_009438.1 1873595 1874521 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1873595..1874521) Shewanella putrefaciens CN-32 5079390 YP_001183167.1 CDS Sputcn32_1643 NC_009438.1 1874518 1875348 R KEGG: son:SO1866 hypothetical protein; hypothetical protein complement(1874518..1875348) Shewanella putrefaciens CN-32 5079391 YP_001183168.1 CDS Sputcn32_1644 NC_009438.1 1875421 1876086 R PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein complement(1875421..1876086) Shewanella putrefaciens CN-32 5079392 YP_001183169.1 CDS Sputcn32_1645 NC_009438.1 1876212 1877054 R KEGG: she:Shewmr4_1555 hypothetical protein; hypothetical protein complement(1876212..1877054) Shewanella putrefaciens CN-32 5079393 YP_001183170.1 CDS Sputcn32_1646 NC_009438.1 1877602 1877754 D KEGG: shm:Shewmr7_1631 hypothetical protein; hypothetical protein 1877602..1877754 Shewanella putrefaciens CN-32 5079394 YP_001183171.1 CDS Sputcn32_1647 NC_009438.1 1878226 1880139 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1878226..1880139 Shewanella putrefaciens CN-32 5079395 YP_001183172.1 CDS Sputcn32_1648 NC_009438.1 1880269 1881240 D PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; adenosylmethionine decarboxylase 1880269..1881240 Shewanella putrefaciens CN-32 5079396 YP_001183173.1 CDS Sputcn32_1649 NC_009438.1 1881429 1882067 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1881429..1882067 Shewanella putrefaciens CN-32 5079397 YP_001183174.1 CDS Sputcn32_1650 NC_009438.1 1882182 1882649 D PFAM: protein of unknown function DUF188; KEGG: she:Shewmr4_1560 protein of unknown function DUF188; hypothetical protein 1882182..1882649 Shewanella putrefaciens CN-32 5079398 YP_001183175.1 CDS Sputcn32_1651 NC_009438.1 1882770 1883345 D PFAM: YceI family protein; KEGG: shm:Shewmr7_1636 YceI family protein; hypothetical protein 1882770..1883345 Shewanella putrefaciens CN-32 5079399 YP_001183176.1 CDS Sputcn32_1652 NC_009438.1 1883523 1883876 D KEGG: shm:Shewmr7_1637 hypothetical protein; hypothetical protein 1883523..1883876 Shewanella putrefaciens CN-32 5079400 YP_001183177.1 CDS Sputcn32_1653 NC_009438.1 1883973 1885751 R PFAM: peptidase M61 domain protein; KEGG: shm:Shewmr7_2385 peptidase M61 domain protein; peptidase M61 domain-containing protein complement(1883973..1885751) Shewanella putrefaciens CN-32 5079401 YP_001183178.1 CDS Sputcn32_1654 NC_009438.1 1885896 1886252 D PFAM: histidine triad (HIT) protein; KEGG: shm:Shewmr7_2384 histidine triad (HIT) protein; histidine triad (HIT) protein 1885896..1886252 Shewanella putrefaciens CN-32 5079402 YP_001183179.1 CDS Sputcn32_1655 NC_009438.1 1886249 1887256 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_2383 uncharacterized domain 1; hypothetical protein 1886249..1887256 Shewanella putrefaciens CN-32 5079403 YP_001183180.1 CDS Sputcn32_1656 NC_009438.1 1887390 1887785 D PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein 1887390..1887785 Shewanella putrefaciens CN-32 5079404 YP_001183181.1 CDS Sputcn32_1657 NC_009438.1 1888340 1889044 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1888340..1889044 Shewanella putrefaciens CN-32 5079405 YP_001183182.1 CDS Sputcn32_1658 NC_009438.1 1889095 1890249 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2718 hypothetical protein; hypothetical protein 1889095..1890249 Shewanella putrefaciens CN-32 5079406 YP_001183183.1 CDS Sputcn32_1659 NC_009438.1 1890326 1891006 R PFAM: cyclic nucleotide-binding; KEGG: son:SO2717 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein complement(1890326..1891006) Shewanella putrefaciens CN-32 5079407 YP_001183184.1 CDS Sputcn32_1660 NC_009438.1 1891411 1893600 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor 1891411..1893600 Shewanella putrefaciens CN-32 5079408 YP_001183185.1 CDS Sputcn32_1661 NC_009438.1 1893703 1893963 D KEGG: son:SO2714 hypothetical protein; hypothetical protein 1893703..1893963 Shewanella putrefaciens CN-32 5079409 YP_001183186.1 CDS Sputcn32_1662 NC_009438.1 1893993 1894694 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: shm:Shewmr7_2378 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 1893993..1894694 Shewanella putrefaciens CN-32 5079410 YP_001183187.1 CDS Sputcn32_1663 NC_009438.1 1894725 1895828 D PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein; aminoglycoside phosphotransferase 1894725..1895828 Shewanella putrefaciens CN-32 5079411 YP_001183188.1 CDS Sputcn32_1664 NC_009438.1 1896027 1896908 D KEGG: son:SO2711 hypothetical protein; hypothetical protein 1896027..1896908 Shewanella putrefaciens CN-32 5079322 YP_001183189.1 CDS Sputcn32_1665 NC_009438.1 1897105 1897653 D PFAM: nitroreductase; KEGG: shm:Shewmr7_2374 nitroreductase; nitroreductase 1897105..1897653 Shewanella putrefaciens CN-32 5079323 YP_001183190.1 CDS Sputcn32_1666 NC_009438.1 1897675 1898187 D PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_2373 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1897675..1898187 Shewanella putrefaciens CN-32 5079324 YP_001183191.1 CDS Sputcn32_1667 NC_009438.1 1898462 1900201 R KEGG: shm:Shewmr7_2369 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(1898462..1900201) Shewanella putrefaciens CN-32 5079325 YP_001183192.1 CDS Sputcn32_1668 NC_009438.1 1900310 1901593 D PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein 1900310..1901593 Shewanella putrefaciens CN-32 5079326 YP_001183193.1 CDS Sputcn32_1669 NC_009438.1 1901668 1902291 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: she:Shewmr4_2295 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1901668..1902291) Shewanella putrefaciens CN-32 5079327 YP_001183194.1 CDS Sputcn32_1670 NC_009438.1 1902453 1903493 R KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(1902453..1903493) Shewanella putrefaciens CN-32 5079328 YP_001183195.1 CDS Sputcn32_1671 NC_009438.1 1903570 1904730 R PFAM: homogentisate 1,2-dioxygenase; KEGG: shm:Shewmr7_2363 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase complement(1903570..1904730) Shewanella putrefaciens CN-32 5079329 YP_001183196.1 CDS Sputcn32_1672 NC_009438.1 1904923 1905837 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator 1904923..1905837 Shewanella putrefaciens CN-32 5079330 YP_001183197.1 CDS Sputcn32_1673 NC_009438.1 1906038 1906832 D PFAM: protein of unknown function DUF124; KEGG: she:Shewmr4_2289 protein of unknown function DUF124; hypothetical protein 1906038..1906832 Shewanella putrefaciens CN-32 5079331 YP_001183198.1 CDS Sputcn32_1674 NC_009438.1 1906927 1909782 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2471 TonB-dependent receptor; TonB-dependent receptor complement(1906927..1909782) Shewanella putrefaciens CN-32 5079332 YP_001183199.1 CDS Sputcn32_1675 NC_009438.1 1910194 1911459 R KEGG: son:SO1967 hypothetical protein; hypothetical protein complement(1910194..1911459) Shewanella putrefaciens CN-32 5079333 YP_001183200.1 CDS Sputcn32_1676 NC_009438.1 1911770 1912108 R KEGG: shm:Shewmr7_2360 hypothetical protein; hypothetical protein complement(1911770..1912108) Shewanella putrefaciens CN-32 5079334 YP_001183201.1 CDS Sputcn32_1677 NC_009438.1 1912194 1912655 R PFAM: protein of unknown function DUF55; KEGG: son:SO1969 hypothetical protein; hypothetical protein complement(1912194..1912655) Shewanella putrefaciens CN-32 5079335 YP_001183202.1 CDS Sputcn32_1678 NC_009438.1 1912942 1913322 D KEGG: son:SO1970 hypothetical protein; hypothetical protein 1912942..1913322 Shewanella putrefaciens CN-32 5079336 YP_001183203.1 CDS Sputcn32_1679 NC_009438.1 1913462 1915174 D activates fatty acids by binding to coenzyme A; AMP-binding protein 1913462..1915174 Shewanella putrefaciens CN-32 5079337 YP_001183204.1 CDS Sputcn32_1680 NC_009438.1 1915276 1917915 R KEGG: she:Shewmr4_1565 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein complement(1915276..1917915) Shewanella putrefaciens CN-32 5079338 YP_001183205.1 CDS Sputcn32_1681 NC_009438.1 1918052 1918618 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(1918052..1918618) Shewanella putrefaciens CN-32 5079339 YP_001183206.1 CDS nhaB NC_009438.1 1918678 1920264 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(1918678..1920264) Shewanella putrefaciens CN-32 5079340 YP_001183207.1 CDS Sputcn32_1683 NC_009438.1 1920578 1921294 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1920578..1921294 Shewanella putrefaciens CN-32 5079341 YP_001183208.1 CDS Sputcn32_1684 NC_009438.1 1921381 1922898 R PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein complement(1921381..1922898) Shewanella putrefaciens CN-32 5079342 YP_001183209.1 CDS Sputcn32_1685 NC_009438.1 1922908 1924182 R PFAM: protein of unknown function DUF444; KEGG: shm:Shewmr7_1645 protein of unknown function DUF444; hypothetical protein complement(1922908..1924182) Shewanella putrefaciens CN-32 5079343 YP_001183210.1 CDS Sputcn32_1686 NC_009438.1 1924243 1926177 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: shm:Shewmr7_1646 putative serine protein kinase, PrkA; putative serine protein kinase PrkA complement(1924243..1926177) Shewanella putrefaciens CN-32 5079344 YP_001183211.1 CDS Sputcn32_1687 NC_009438.1 1926439 1927023 R PFAM: manganese and iron superoxide dismutase; KEGG: shm:Shewmr7_1647 superoxide dismutase; superoxide dismutase complement(1926439..1927023) Shewanella putrefaciens CN-32 5079345 YP_001183212.1 CDS Sputcn32_1688 NC_009438.1 1927249 1927581 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: shm:Shewmr7_1648 glutaredoxin-like protein; glutaredoxin-like protein 1927249..1927581 Shewanella putrefaciens CN-32 5079346 YP_001183213.1 CDS Sputcn32_1689 NC_009438.1 1927710 1928948 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease; uracil-xanthine permease complement(1927710..1928948) Shewanella putrefaciens CN-32 5079347 YP_001183214.1 CDS Sputcn32_1690 NC_009438.1 1929154 1930245 D KEGG: she:Shewmr4_1575 hypothetical protein; hypothetical protein 1929154..1930245 Shewanella putrefaciens CN-32 5079348 YP_001183215.1 CDS Sputcn32_1691 NC_009438.1 1930335 1931045 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1930335..1931045 Shewanella putrefaciens CN-32 5079349 YP_001183216.1 CDS Sputcn32_1692 NC_009438.1 1931127 1933076 R KEGG: son:SO2876 hypothetical protein; hypothetical protein complement(1931127..1933076) Shewanella putrefaciens CN-32 5079350 YP_001183217.1 CDS Sputcn32_1693 NC_009438.1 1933303 1933725 R KEGG: shm:Shewmr7_2421 hypothetical protein; hypothetical protein complement(1933303..1933725) Shewanella putrefaciens CN-32 5079351 YP_001183218.1 CDS Sputcn32_1694 NC_009438.1 1933729 1934079 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase complement(1933729..1934079) Shewanella putrefaciens CN-32 5079352 YP_001183219.1 CDS Sputcn32_1695 NC_009438.1 1934197 1935654 R PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_2419 peptidase M48, Ste24p; peptidase M48, Ste24p complement(1934197..1935654) Shewanella putrefaciens CN-32 5079353 YP_001183220.1 CDS Sputcn32_1696 NC_009438.1 1935782 1936015 D PFAM: SirA family protein; KEGG: shm:Shewmr7_2418 SirA family protein; SirA family protein 1935782..1936015 Shewanella putrefaciens CN-32 5079354 YP_001183221.1 CDS Sputcn32_1697 NC_009438.1 1936193 1937275 D PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_2417 protein of unknown function UPF0118; hypothetical protein 1936193..1937275 Shewanella putrefaciens CN-32 5079355 YP_001183222.1 CDS Sputcn32_1698 NC_009438.1 1937354 1938283 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(1937354..1938283) Shewanella putrefaciens CN-32 5079356 YP_001183223.1 CDS Sputcn32_1699 NC_009438.1 1938395 1939036 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative; lysine exporter protein LysE/YggA 1938395..1939036 Shewanella putrefaciens CN-32 5079357 YP_001183224.1 CDS bcp NC_009438.1 1939234 1939701 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(1939234..1939701) Shewanella putrefaciens CN-32 5079358 YP_001183225.1 CDS Sputcn32_1701 NC_009438.1 1939705 1940256 R KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor complement(1939705..1940256) Shewanella putrefaciens CN-32 5079359 YP_001183226.1 CDS Sputcn32_1702 NC_009438.1 1940429 1941313 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1940429..1941313 Shewanella putrefaciens CN-32 5079360 YP_001183227.1 CDS Sputcn32_1703 NC_009438.1 1941317 1942414 D PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein 1941317..1942414 Shewanella putrefaciens CN-32 5079361 YP_001183228.1 CDS Sputcn32_1704 NC_009438.1 1942770 1943855 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_2410 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1942770..1943855 Shewanella putrefaciens CN-32 5079362 YP_001183229.1 CDS Sputcn32_1705 NC_009438.1 1943852 1946947 D PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_2409 acriflavin resistance protein; acriflavin resistance protein 1943852..1946947 Shewanella putrefaciens CN-32 5079363 YP_001183230.1 CDS Sputcn32_1706 NC_009438.1 1947081 1947521 R PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2335 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1947081..1947521) Shewanella putrefaciens CN-32 5079364 YP_001183231.1 CDS Sputcn32_1707 NC_009438.1 1947629 1948795 R PFAM: glucose sorbosone dehydrogenase; KEGG: ilo:IL2579 glucose dehydrogenase, putative; glucose sorbosone dehydrogenase complement(1947629..1948795) Shewanella putrefaciens CN-32 5079365 YP_001183232.1 CDS Sputcn32_1708 NC_009438.1 1948912 1949670 R PFAM: protein of unknown function DUF81; KEGG: she:Shewmr4_2333 protein of unknown function DUF81; hypothetical protein complement(1948912..1949670) Shewanella putrefaciens CN-32 5079366 YP_001183233.1 CDS Sputcn32_1709 NC_009438.1 1949862 1950179 R KEGG: shm:Shewmr7_2405 hypothetical protein; hypothetical protein complement(1949862..1950179) Shewanella putrefaciens CN-32 5079367 YP_001183234.1 CDS Sputcn32_1710 NC_009438.1 1950218 1950820 R PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein; ThiJ/PfpI domain-containing protein complement(1950218..1950820) Shewanella putrefaciens CN-32 5079368 YP_001183235.1 CDS Sputcn32_1711 NC_009438.1 1950957 1951979 R hypothetical protein complement(1950957..1951979) Shewanella putrefaciens CN-32 5079369 YP_001183236.1 CDS Sputcn32_1712 NC_009438.1 1952170 1952487 D hypothetical protein 1952170..1952487 Shewanella putrefaciens CN-32 5079370 YP_001183237.1 CDS Sputcn32_1713 NC_009438.1 1952587 1953243 R KEGG: shm:Shewmr7_2400 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(1952587..1953243) Shewanella putrefaciens CN-32 5079371 YP_001183238.1 CDS Sputcn32_1714 NC_009438.1 1953372 1954076 R KEGG: son:SO1892 acetate CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(1953372..1954076) Shewanella putrefaciens CN-32 5079272 YP_001183239.1 CDS Sputcn32_1715 NC_009438.1 1954123 1955070 R PFAM: pyruvate carboxyltransferase; KEGG: shm:Shewmr7_2398 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(1954123..1955070) Shewanella putrefaciens CN-32 5079273 YP_001183240.1 CDS Sputcn32_1716 NC_009438.1 1955071 1957140 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; carbamoyl-phosphate synthase subunit L complement(1955071..1957140) Shewanella putrefaciens CN-32 5079274 YP_001183241.1 CDS Sputcn32_1717 NC_009438.1 1957140 1958006 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(1957140..1958006) Shewanella putrefaciens CN-32 5079275 YP_001183242.1 CDS Sputcn32_1718 NC_009438.1 1958068 1959675 R PFAM: carboxyl transferase; KEGG: she:Shewmr4_2323 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(1958068..1959675) Shewanella putrefaciens CN-32 5079276 YP_001183243.1 CDS Sputcn32_1719 NC_009438.1 1959779 1960948 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(1959779..1960948) Shewanella putrefaciens CN-32 5079277 YP_001183244.1 CDS Sputcn32_1720 NC_009438.1 1961101 1961505 R PFAM: regulatory protein, MerR; KEGG: shm:Shewmr7_2393 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1961101..1961505) Shewanella putrefaciens CN-32 5079278 YP_001183245.1 CDS Sputcn32_1721 NC_009438.1 1961785 1963743 D PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_2319 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1961785..1963743 Shewanella putrefaciens CN-32 5079279 YP_001183246.1 CDS Sputcn32_1722 NC_009438.1 1964041 1964355 D PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein; small multidrug resistance protein 1964041..1964355 Shewanella putrefaciens CN-32 5079280 YP_001183247.1 CDS Sputcn32_1723 NC_009438.1 1964506 1966032 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1964506..1966032 Shewanella putrefaciens CN-32 5079281 YP_001183248.1 CDS Sputcn32_1724 NC_009438.1 1966186 1967076 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1689 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1966186..1967076) Shewanella putrefaciens CN-32 5079282 YP_001183249.1 CDS Sputcn32_1725 NC_009438.1 1967422 1968234 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: shm:Shewmr7_1691 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 1967422..1968234 Shewanella putrefaciens CN-32 5079283 YP_001183250.1 CDS Sputcn32_1726 NC_009438.1 1968380 1969255 R TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1968380..1969255) Shewanella putrefaciens CN-32 5079284 YP_001183251.1 CDS Sputcn32_1727 NC_009438.1 1969652 1970593 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: she:Shewmr4_1618 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1969652..1970593 Shewanella putrefaciens CN-32 5079285 YP_001183252.1 CDS Sputcn32_1728 NC_009438.1 1970711 1971577 D KEGG: she:Shewmr4_1619 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 1970711..1971577 Shewanella putrefaciens CN-32 5079286 YP_001183253.1 CDS Sputcn32_1729 NC_009438.1 1971579 1971983 D KEGG: son:SO1913 hypothetical protein; hypothetical protein 1971579..1971983 Shewanella putrefaciens CN-32 5079287 YP_001183254.1 CDS Sputcn32_1730 NC_009438.1 1972030 1972911 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1621 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1972030..1972911) Shewanella putrefaciens CN-32 5079288 YP_001183255.1 CDS Sputcn32_1731 NC_009438.1 1973030 1974298 D PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1697 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1973030..1974298 Shewanella putrefaciens CN-32 5079289 YP_001183256.1 CDS Sputcn32_1732 NC_009438.1 1974433 1975986 R PFAM: Ppx/GppA phosphatase; KEGG: she:Shewmr4_2208 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(1974433..1975986) Shewanella putrefaciens CN-32 5079290 YP_001183257.1 CDS Sputcn32_1733 NC_009438.1 1976030 1978192 R PFAM: Polyphosphate kinase; KEGG: she:Shewmr4_2207 polyphosphate kinase; polyphosphate kinase complement(1976030..1978192) Shewanella putrefaciens CN-32 5079291 YP_001183258.1 CDS Sputcn32_1734 NC_009438.1 1978640 1980106 D KEGG: she:Shewmr4_2206 hypothetical protein; putative chaperone 1978640..1980106 Shewanella putrefaciens CN-32 5079292 YP_001183259.1 CDS Sputcn32_1735 NC_009438.1 1980138 1980626 D PFAM: CreA family protein; KEGG: she:Shewmr4_2205 CreA family protein; CreA family protein 1980138..1980626 Shewanella putrefaciens CN-32 5079293 YP_001183260.1 CDS Sputcn32_1736 NC_009438.1 1980741 1981940 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(1980741..1981940) Shewanella putrefaciens CN-32 5079294 YP_001183261.1 CDS Sputcn32_1737 NC_009438.1 1982162 1984321 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_2280 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1982162..1984321) Shewanella putrefaciens CN-32 5079295 YP_001183262.1 CDS Sputcn32_1738 NC_009438.1 1984354 1985046 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator complement(1984354..1985046) Shewanella putrefaciens CN-32 5079296 YP_001183263.1 CDS Sputcn32_1739 NC_009438.1 1985322 1987595 D KEGG: shm:Shewmr7_2277 vault protein inter-alpha-trypsin domain protein; TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; cell wall anchor domain-containing protein 1985322..1987595 Shewanella putrefaciens CN-32 5079297 YP_001183264.1 CDS Sputcn32_1740 NC_009438.1 1987608 1988222 D TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein 1987608..1988222 Shewanella putrefaciens CN-32 5079298 YP_001183265.1 CDS Sputcn32_1741 NC_009438.1 1988290 1989315 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: she:Shewmr4_2198 diguanylate cyclase; diguanylate cyclase complement(1988290..1989315) Shewanella putrefaciens CN-32 5079299 YP_001183266.1 CDS Sputcn32_1742 NC_009438.1 1989504 1991102 D PFAM: peptidase M28; KEGG: she:Shewmr4_2197 peptidase M28; peptidase M28 1989504..1991102 Shewanella putrefaciens CN-32 5079300 YP_001183267.1 CDS Sputcn32_1743 NC_009438.1 1991160 1992023 R KEGG: shm:Shewmr7_2273 hypothetical protein; hypothetical protein complement(1991160..1992023) Shewanella putrefaciens CN-32 5079301 YP_001183268.1 CDS Sputcn32_1744 NC_009438.1 1992349 1993344 R TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; alpha-L-glutamate ligase complement(1992349..1993344) Shewanella putrefaciens CN-32 5079302 YP_001183269.1 CDS Sputcn32_1745 NC_009438.1 1993365 1993811 R PFAM: protein of unknown function DUF413; KEGG: she:Shewmr4_2194 protein of unknown function DUF413; hypothetical protein complement(1993365..1993811) Shewanella putrefaciens CN-32 5079303 YP_001183270.1 CDS Sputcn32_1746 NC_009438.1 1993920 1994768 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator 1993920..1994768 Shewanella putrefaciens CN-32 5079304 YP_001183271.1 CDS Sputcn32_1747 NC_009438.1 1994848 1995219 R PFAM: diacylglycerol kinase; KEGG: shm:Shewmr7_2269 diacylglycerol kinase; diacylglycerol kinase complement(1994848..1995219) Shewanella putrefaciens CN-32 5079305 YP_001183272.1 CDS Sputcn32_1748 NC_009438.1 1995539 1996468 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1995539..1996468 Shewanella putrefaciens CN-32 5079306 YP_001183273.1 CDS Sputcn32_1749 NC_009438.1 1996522 1997004 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: she:Shewmr4_2189 protein tyrosine phosphatase; protein tyrosine phosphatase 1996522..1997004 Shewanella putrefaciens CN-32 5079307 YP_001183274.1 CDS Sputcn32_1750 NC_009438.1 1997068 1997370 D KEGG: shm:Shewmr7_3172 hypothetical protein; hypothetical protein 1997068..1997370 Shewanella putrefaciens CN-32 5079308 YP_001183275.1 CDS Sputcn32_1751 NC_009438.1 1997668 1998135 D PFAM: GCN5-related N-acetyltransferase; KEGG: ppr:PBPRB1061 hypothetical protein; N-acetyltransferase GCN5 1997668..1998135 Shewanella putrefaciens CN-32 5079309 YP_001183276.1 CDS rbgA NC_009438.1 1998526 1999467 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(1998526..1999467) Shewanella putrefaciens CN-32 5079310 YP_001183277.1 CDS Sputcn32_1753 NC_009438.1 1999618 2000457 R PFAM: 2OG-Fe(II) oxygenase; KEGG: shm:Shewmr7_2262 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(1999618..2000457) Shewanella putrefaciens CN-32 5079311 YP_001183278.1 CDS Sputcn32_1754 NC_009438.1 2000838 2001743 D this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 2000838..2001743 Shewanella putrefaciens CN-32 5079312 YP_001183279.1 CDS Sputcn32_1755 NC_009438.1 2001839 2002822 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2001839..2002822) Shewanella putrefaciens CN-32 5079313 YP_001183280.1 CDS Sputcn32_1756 NC_009438.1 2003214 2003924 D PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease 2003214..2003924 Shewanella putrefaciens CN-32 5079314 YP_001183281.1 CDS Sputcn32_1757 NC_009438.1 2004049 2004354 D KEGG: shm:Shewmr7_2258 hypothetical protein; hypothetical protein 2004049..2004354 Shewanella putrefaciens CN-32 5079315 YP_001183282.1 CDS Sputcn32_1758 NC_009438.1 2004347 2005063 D KEGG: she:Shewmr4_2180 hypothetical protein; hypothetical protein 2004347..2005063 Shewanella putrefaciens CN-32 5079316 YP_001183283.1 CDS Sputcn32_1759 NC_009438.1 2005266 2006078 D KEGG: shm:Shewmr7_2256 hypothetical protein; hypothetical protein 2005266..2006078 Shewanella putrefaciens CN-32 5079317 YP_001183284.1 CDS Sputcn32_1760 NC_009438.1 2006100 2006966 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2006100..2006966 Shewanella putrefaciens CN-32 5079318 YP_001183285.1 CDS Sputcn32_1761 NC_009438.1 2007165 2008838 D Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2007165..2008838 Shewanella putrefaciens CN-32 5079319 YP_001183286.1 CDS Sputcn32_1762 NC_009438.1 2008916 2010019 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: she:Shewmr4_2176 ribonuclease D; ribonuclease D 2008916..2010019 Shewanella putrefaciens CN-32 5079320 YP_001183287.1 CDS minE NC_009438.1 2010092 2010349 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2010092..2010349) Shewanella putrefaciens CN-32 5079321 YP_001183288.1 CDS Sputcn32_1764 NC_009438.1 2010352 2011161 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_2251 septum site-determining protein MinD; septum site-determining protein MinD complement(2010352..2011161) Shewanella putrefaciens CN-32 5079223 YP_001183289.1 CDS minC NC_009438.1 2011189 2011854 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2011189..2011854) Shewanella putrefaciens CN-32 5079224 YP_001183290.1 CDS Sputcn32_1766 NC_009438.1 2011978 2012256 D PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein 2011978..2012256 Shewanella putrefaciens CN-32 5079225 YP_001183291.1 CDS Sputcn32_1767 NC_009438.1 2012411 2012884 D PFAM: protein of unknown function UPF0153; KEGG: she:Shewmr4_2170 protein of unknown function UPF0153; hypothetical protein 2012411..2012884 Shewanella putrefaciens CN-32 5079226 YP_001183292.1 CDS Sputcn32_1768 NC_009438.1 2012952 2013446 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: she:Shewmr4_2169 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2012952..2013446) Shewanella putrefaciens CN-32 5079227 YP_001183293.1 CDS Sputcn32_1769 NC_009438.1 2013471 2014874 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(2013471..2014874) Shewanella putrefaciens CN-32 5079228 YP_001183294.1 CDS Sputcn32_1770 NC_009438.1 2015254 2017026 D PFAM: protein of unknown function DUF885; KEGG: son:SO2570 lipoprotein, putative; hypothetical protein 2015254..2017026 Shewanella putrefaciens CN-32 5079229 YP_001183295.1 CDS Sputcn32_1771 NC_009438.1 2017285 2017605 R KEGG: son:SO2569 hypothetical protein; hypothetical protein complement(2017285..2017605) Shewanella putrefaciens CN-32 5079230 YP_001183296.1 CDS Sputcn32_1772 NC_009438.1 2017839 2018333 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2017839..2018333 Shewanella putrefaciens CN-32 5079231 YP_001183297.1 CDS Sputcn32_1773 NC_009438.1 2018376 2020202 D PFAM: AsmA family protein; KEGG: shm:Shewmr7_2241 AsmA family protein; AsmA family protein 2018376..2020202 Shewanella putrefaciens CN-32 5079232 YP_001183298.1 CDS Sputcn32_1774 NC_009438.1 2020202 2020807 D KEGG: shm:Shewmr7_2240 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein 2020202..2020807 Shewanella putrefaciens CN-32 5079233 YP_001183299.1 CDS Sputcn32_1775 NC_009438.1 2020914 2022458 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: shm:Shewmr7_2239 MLTD_N domain protein; MltD domain-containing protein complement(2020914..2022458) Shewanella putrefaciens CN-32 5079234 YP_001183300.1 CDS Sputcn32_1776 NC_009438.1 2022701 2023504 R PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_2238 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(2022701..2023504) Shewanella putrefaciens CN-32 5079235 YP_001183301.1 CDS Sputcn32_1777 NC_009438.1 2023670 2024404 D PFAM: Methyltransferase type 11; KEGG: she:Shewmr4_2160 methyltransferase type 11; type 11 methyltransferase 2023670..2024404 Shewanella putrefaciens CN-32 5079236 YP_001183302.1 CDS Sputcn32_1778 NC_009438.1 2024428 2025324 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2236 transcriptional regulator, LysR family; LysR family transcriptional regulator 2024428..2025324 Shewanella putrefaciens CN-32 5079237 YP_001183303.1 CDS rnhA NC_009438.1 2025488 2025958 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(2025488..2025958) Shewanella putrefaciens CN-32 5079238 YP_001183304.1 CDS Sputcn32_1780 NC_009438.1 2026029 2026757 D KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2026029..2026757 Shewanella putrefaciens CN-32 5079239 YP_001183305.1 CDS Sputcn32_1781 NC_009438.1 2026768 2028135 D KEGG: shm:Shewmr7_2233 hypothetical protein; hypothetical protein 2026768..2028135 Shewanella putrefaciens CN-32 5079240 YP_001183306.1 CDS Sputcn32_1782 NC_009438.1 2028708 2029574 R PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_2042 OmpA/MotB; OmpA/MotB domain-containing protein complement(2028708..2029574) Shewanella putrefaciens CN-32 5079243 YP_001183307.1 CDS Sputcn32_1783 NC_009438.1 2029571 2029996 R KEGG: son:SO2554 hypothetical protein; hypothetical protein complement(2029571..2029996) Shewanella putrefaciens CN-32 5079244 YP_001183308.1 CDS Sputcn32_1784 NC_009438.1 2030112 2030939 R PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: son:SO2553 hyperosmotically inducible periplasmic protein; transport-associated complement(2030112..2030939) Shewanella putrefaciens CN-32 5079245 YP_001183309.1 CDS Sputcn32_1785 NC_009438.1 2031031 2031399 R KEGG: son:SO2552 hypothetical protein; hypothetical protein complement(2031031..2031399) Shewanella putrefaciens CN-32 5079246 YP_001183310.1 CDS Sputcn32_1786 NC_009438.1 2031780 2032547 R PFAM: cyclic nucleotide-binding; KEGG: son:SO2551 transcriptional regulator-related protein; cyclic nucleotide-binding protein complement(2031780..2032547) Shewanella putrefaciens CN-32 5079247 YP_001183311.1 CDS Sputcn32_1787 NC_009438.1 2032671 2033369 R KEGG: son:SO2550 transcriptional regulator-related protein; CRP/FNR family transcriptional regulator complement(2032671..2033369) Shewanella putrefaciens CN-32 5079248 YP_001183312.1 CDS Sputcn32_1788 NC_009438.1 2033506 2033817 R PFAM: transport-associated; KEGG: son:SO2549 hypothetical protein; transport-associated complement(2033506..2033817) Shewanella putrefaciens CN-32 5079249 YP_001183313.1 CDS Sputcn32_1789 NC_009438.1 2033860 2034069 R KEGG: rfr:Rfer_1879 hypothetical protein; hypothetical protein complement(2033860..2034069) Shewanella putrefaciens CN-32 5079250 YP_001183314.1 CDS Sputcn32_1790 NC_009438.1 2034311 2034730 D PFAM: PRC-barrel domain protein; KEGG: net:Neut_2352 PRC-barrel domain protein; PRC-barrel domain-containing protein 2034311..2034730 Shewanella putrefaciens CN-32 5079251 YP_001183315.1 CDS fadE NC_009438.1 2034992 2037439 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2034992..2037439) Shewanella putrefaciens CN-32 5079252 YP_001183316.1 CDS Sputcn32_1792 NC_009438.1 2037683 2038462 D PFAM: glutamine amidotransferase, class-II; KEGG: shm:Shewmr7_2222 glutamine amidotransferase, class-II; glutamine amidotransferase, class-II 2037683..2038462 Shewanella putrefaciens CN-32 5079253 YP_001183317.1 CDS Sputcn32_1793 NC_009438.1 2038627 2039517 R KEGG: son:SO2533 hypothetical protein; hypothetical protein complement(2038627..2039517) Shewanella putrefaciens CN-32 5079254 YP_001183318.1 CDS Sputcn32_1794 NC_009438.1 2039625 2040050 R PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: shm:Shewmr7_2220 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2039625..2040050) Shewanella putrefaciens CN-32 5079255 YP_001183319.1 CDS def NC_009438.1 2040319 2040810 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2040319..2040810 Shewanella putrefaciens CN-32 5079256 YP_001183320.1 CDS Sputcn32_1796 NC_009438.1 2041041 2041886 D KEGG: shm:Shewmr7_2218 hypothetical protein; hypothetical protein 2041041..2041886 Shewanella putrefaciens CN-32 5079257 YP_001183321.1 CDS Sputcn32_1797 NC_009438.1 2042029 2042469 D KEGG: cgb:cg2479 hypothetical protein; hypothetical protein 2042029..2042469 Shewanella putrefaciens CN-32 5079258 YP_001183322.1 CDS Sputcn32_1799 NC_009438.1 2042812 2044026 D PFAM: Fmu (Sun) domain protein; KEGG: she:Shewmr4_2131 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 2042812..2044026 Shewanella putrefaciens CN-32 5079260 YP_001183323.1 CDS Sputcn32_1800 NC_009438.1 2044164 2046413 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; KEGG: she:Shewmr4_2130 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2044164..2046413 Shewanella putrefaciens CN-32 5079261 YP_001183324.1 CDS ddl NC_009438.1 2046504 2047517 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(2046504..2047517) Shewanella putrefaciens CN-32 5079262 YP_001183325.1 CDS Sputcn32_1802 NC_009438.1 2047864 2048649 D SMART: extracellular solute-binding protein, family 3; KEGG: dvu:DVU0852 extracellular solute-binding protein, putative; extracellular solute-binding protein 2047864..2048649 Shewanella putrefaciens CN-32 5079263 YP_001183326.1 CDS asnC NC_009438.1 2048787 2050187 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2048787..2050187) Shewanella putrefaciens CN-32 5079264 YP_001183327.1 CDS Sputcn32_1804 NC_009438.1 2050338 2050673 D KEGG: shm:Shewmr7_2203 hypothetical protein; hypothetical protein 2050338..2050673 Shewanella putrefaciens CN-32 5079265 YP_001183328.1 CDS Sputcn32_1805 NC_009438.1 2050694 2051278 R PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_2126 NUDIX hydrolase; NUDIX hydrolase complement(2050694..2051278) Shewanella putrefaciens CN-32 5079266 YP_001183329.1 CDS Sputcn32_1806 NC_009438.1 2051318 2052718 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I complement(2051318..2052718) Shewanella putrefaciens CN-32 5079267 YP_001183330.1 CDS Sputcn32_1807 NC_009438.1 2052838 2054382 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 2052838..2054382 Shewanella putrefaciens CN-32 5079268 YP_001183331.1 CDS Sputcn32_1808 NC_009438.1 2054642 2056705 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: shm:Shewmr7_2199 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 2054642..2056705 Shewanella putrefaciens CN-32 5079269 YP_001183332.1 CDS Sputcn32_1809 NC_009438.1 2056901 2057359 D PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_2122 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2056901..2057359 Shewanella putrefaciens CN-32 5079270 YP_001183333.1 CDS Sputcn32_1810 NC_009438.1 2057430 2058365 D KEGG: she:Shewmr4_2121 hypothetical protein; hypothetical protein 2057430..2058365 Shewanella putrefaciens CN-32 5079271 YP_001183334.1 CDS Sputcn32_1811 NC_009438.1 2058566 2061178 R PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: she:Shewmr4_1683 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2058566..2061178) Shewanella putrefaciens CN-32 5079177 YP_001183335.1 CDS Sputcn32_1812 NC_009438.1 2061496 2062128 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 2061496..2062128 Shewanella putrefaciens CN-32 5079178 YP_001183336.1 CDS Sputcn32_1813 NC_009438.1 2062385 2064379 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: shm:Shewmr7_1760 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2062385..2064379 Shewanella putrefaciens CN-32 5079179 YP_001183337.1 CDS Sputcn32_1815 NC_009438.1 2065072 2066220 R PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A4906 major facilitator superfamily (MFS_1) transporter; major facilitator superfamily transporter complement(2065072..2066220) Shewanella putrefaciens CN-32 5079182 YP_001183338.1 CDS Sputcn32_1816 NC_009438.1 2066223 2067440 R PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_3980 major facilitator family transporter; major facilitator superfamily transporter complement(2066223..2067440) Shewanella putrefaciens CN-32 5079183 YP_001183339.1 CDS Sputcn32_1817 NC_009438.1 2067437 2068630 R PFAM: beta-lactamase; KEGG: pae:PA2315 hypothetical protein; beta-lactamase complement(2067437..2068630) Shewanella putrefaciens CN-32 5079184 YP_001183340.1 CDS Sputcn32_1818 NC_009438.1 2068767 2069660 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pae:PA2316 probable transcriptional regulator; LysR family transcriptional regulator 2068767..2069660 Shewanella putrefaciens CN-32 5079185 YP_001183341.1 CDS Sputcn32_1819 NC_009438.1 2070103 2071080 D TIGRFAM: CRISPR-associated protein Cas1; KEGG: ppr:PBPRB1995 hypothetical protein; CRISPR-associated Cas1 family protein 2070103..2071080 Shewanella putrefaciens CN-32 5079186 YP_001183342.1 CDS Sputcn32_1820 NC_009438.1 2071093 2074029 D SMART: DEAD-like helicases-like; KEGG: ppr:PBPRB1994 hypothetical protein; DEAD/DEAH box helicase 2071093..2074029 Shewanella putrefaciens CN-32 5079187 YP_001183343.1 CDS Sputcn32_1821 NC_009438.1 2074033 2074980 D KEGG: ppr:PBPRB1993 hypothetical protein; hypothetical protein 2074033..2074980 Shewanella putrefaciens CN-32 5079188 YP_001183344.1 CDS Sputcn32_1822 NC_009438.1 2074989 2075999 D KEGG: ppr:PBPRB1992 hypothetical protein; hypothetical protein 2074989..2075999 Shewanella putrefaciens CN-32 5079189 YP_001183345.1 CDS Sputcn32_1823 NC_009438.1 2076008 2076559 D TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: ppr:PBPRB1991 hypothetical protein; CRISPR-associated Csy4 family protein 2076008..2076559 Shewanella putrefaciens CN-32 5079190 YP_001183346.1 CDS Sputcn32_1824 NC_009438.1 2081819 2083813 D SMART: helicase c2; KEGG: shm:Shewmr7_2172 helicase C2; helicase c2 2081819..2083813 Shewanella putrefaciens CN-32 5079191 YP_001183347.1 CDS Sputcn32_1825 NC_009438.1 2083987 2084277 R KEGG: shm:Shewmr7_2388 cytochrome c3; cytochrome c3 complement(2083987..2084277) Shewanella putrefaciens CN-32 5079192 YP_001183348.1 CDS Sputcn32_1826 NC_009438.1 2084864 2086849 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_1806 TonB-dependent receptor; TonB-dependent receptor complement(2084864..2086849) Shewanella putrefaciens CN-32 5079193 YP_001183349.1 CDS Sputcn32_1827 NC_009438.1 2087039 2088547 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_2170 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2087039..2088547) Shewanella putrefaciens CN-32 5079194 YP_001183350.1 CDS pheS NC_009438.1 2089072 2090055 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2089072..2090055 Shewanella putrefaciens CN-32 5079195 YP_001183351.1 CDS pheT NC_009438.1 2090071 2092458 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2090071..2092458 Shewanella putrefaciens CN-32 5079196 YP_001183352.1 CDS ihfA NC_009438.1 2092462 2092758 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2092462..2092758 Shewanella putrefaciens CN-32 5079197 YP_001183353.1 CDS Sputcn32_1831 NC_009438.1 2092855 2093796 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2092855..2093796 Shewanella putrefaciens CN-32 5079198 YP_001183354.1 CDS Sputcn32_1832 NC_009438.1 2093933 2094280 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: shm:Shewmr7_2165 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA complement(2093933..2094280) Shewanella putrefaciens CN-32 5079199 YP_001183355.1 CDS Sputcn32_1833 NC_009438.1 2094280 2095296 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: shm:Shewmr7_2164 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2094280..2095296) Shewanella putrefaciens CN-32 5079200 YP_001183356.1 CDS Sputcn32_1834 NC_009438.1 2095289 2096428 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2095289..2096428) Shewanella putrefaciens CN-32 5079201 YP_001183357.1 CDS Sputcn32_1835 NC_009438.1 2096490 2096735 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF complement(2096490..2096735) Shewanella putrefaciens CN-32 5079202 YP_001183358.1 CDS Sputcn32_1836 NC_009438.1 2096735 2097517 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2096735..2097517) Shewanella putrefaciens CN-32 5079203 YP_001183359.1 CDS Sputcn32_1837 NC_009438.1 2097792 2100491 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: she:Shewmr4_2098 CoA-binding domain protein; CoA-binding domain-containing protein complement(2097792..2100491) Shewanella putrefaciens CN-32 5079204 YP_001183360.1 CDS Sputcn32_1838 NC_009438.1 2100693 2101280 D KEGG: pfl:PFL_3338 hypothetical protein; hypothetical protein 2100693..2101280 Shewanella putrefaciens CN-32 5079205 YP_001183361.1 CDS Sputcn32_1839 NC_009438.1 2101406 2103016 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2101406..2103016) Shewanella putrefaciens CN-32 5079206 YP_001183362.1 CDS Sputcn32_1840 NC_009438.1 2103228 2104016 D KEGG: shm:Shewmr7_1896 hypothetical protein; hypothetical protein 2103228..2104016 Shewanella putrefaciens CN-32 5079207 YP_001183363.1 CDS Sputcn32_1841 NC_009438.1 2104218 2106308 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2511 outer membrane receptor for ferric siderophore; TonB-dependent siderophore receptor complement(2104218..2106308) Shewanella putrefaciens CN-32 5079208 YP_001183364.1 CDS Sputcn32_1842 NC_009438.1 2106437 2107606 D PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1899 PepSY-associated TM helix domain protein; peptidase 2106437..2107606 Shewanella putrefaciens CN-32 5079209 YP_001183365.1 CDS Sputcn32_1843 NC_009438.1 2107606 2108073 D KEGG: she:Shewmr4_2075 hypothetical protein; hypothetical protein 2107606..2108073 Shewanella putrefaciens CN-32 5079210 YP_001183366.1 CDS Sputcn32_1844 NC_009438.1 2108124 2108765 R KEGG: she:Shewmr4_2070 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(2108124..2108765) Shewanella putrefaciens CN-32 5079211 YP_001183367.1 CDS Sputcn32_1845 NC_009438.1 2108781 2109479 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(2108781..2109479) Shewanella putrefaciens CN-32 5079212 YP_001183368.1 CDS Sputcn32_1846 NC_009438.1 2109472 2110098 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(2109472..2110098) Shewanella putrefaciens CN-32 5079213 YP_001183369.1 CDS rnfD NC_009438.1 2110165 2111214 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(2110165..2111214) Shewanella putrefaciens CN-32 5079214 YP_001183370.1 CDS Sputcn32_1848 NC_009438.1 2111280 2113661 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(2111280..2113661) Shewanella putrefaciens CN-32 5079215 YP_001183371.1 CDS Sputcn32_1849 NC_009438.1 2113655 2114254 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(2113655..2114254) Shewanella putrefaciens CN-32 5079216 YP_001183372.1 CDS Sputcn32_1850 NC_009438.1 2114256 2114834 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E complement(2114256..2114834) Shewanella putrefaciens CN-32 5079217 YP_001183373.1 CDS Sputcn32_1851 NC_009438.1 2114960 2116864 R PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1912 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(2114960..2116864) Shewanella putrefaciens CN-32 5079218 YP_001183374.1 CDS Sputcn32_1852 NC_009438.1 2118525 2120531 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2118525..2120531 Shewanella putrefaciens CN-32 5080160 YP_001183375.1 CDS Sputcn32_1853 NC_009438.1 2120613 2121179 R PFAM: Rhomboid family protein; KEGG: she:Shewmr4_2060 rhomboid family protein; rhomboid family protein complement(2120613..2121179) Shewanella putrefaciens CN-32 5080161 YP_001183376.1 CDS Sputcn32_1854 NC_009438.1 2121206 2121943 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC complement(2121206..2121943) Shewanella putrefaciens CN-32 5080162 YP_001183377.1 CDS Sputcn32_1855 NC_009438.1 2122115 2122783 D KEGG: son:SO2501 radical activating enzyme; radical activating enzyme 2122115..2122783 Shewanella putrefaciens CN-32 5080163 YP_001183378.1 CDS Sputcn32_1856 NC_009438.1 2123520 2124008 D KEGG: she:Shewmr4_2057 hypothetical protein; hypothetical protein 2123520..2124008 Shewanella putrefaciens CN-32 5080167 YP_001183379.1 CDS Sputcn32_1857 NC_009438.1 2124153 2124488 D KEGG: son:SO2499 hypothetical protein; hypothetical protein 2124153..2124488 Shewanella putrefaciens CN-32 5080168 YP_001183380.1 CDS Sputcn32_1858 NC_009438.1 2124679 2126862 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; KEGG: she:Shewmr4_2055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2124679..2126862 Shewanella putrefaciens CN-32 5080169 YP_001183381.1 CDS Sputcn32_1859 NC_009438.1 2126953 2127444 R PFAM: SEC-C motif domain protein; KEGG: shm:Shewmr7_1921 sec-C motif domain protein; SecC motif-containing protein complement(2126953..2127444) Shewanella putrefaciens CN-32 5080170 YP_001183382.1 CDS Sputcn32_1860 NC_009438.1 2127473 2128057 R KEGG: she:Shewmr4_2053 hypothetical protein; hypothetical protein complement(2127473..2128057) Shewanella putrefaciens CN-32 5080171 YP_001183383.1 CDS Sputcn32_1861 NC_009438.1 2128192 2128782 D PFAM: Smr protein/MutS2; KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 2128192..2128782 Shewanella putrefaciens CN-32 5080172 YP_001183384.1 CDS Sputcn32_1862 NC_009438.1 2129059 2129700 D PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1925 transcriptional regulator, TetR family; TetR family transcriptional regulator 2129059..2129700 Shewanella putrefaciens CN-32 5080173 YP_001183385.1 CDS Sputcn32_1863 NC_009438.1 2129713 2131992 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2129713..2131992 Shewanella putrefaciens CN-32 5080174 YP_001183386.1 CDS Sputcn32_1864 NC_009438.1 2132146 2133585 R PFAM: pyruvate kinase; KEGG: shm:Shewmr7_1927 pyruvate kinase; pyruvate kinase complement(2132146..2133585) Shewanella putrefaciens CN-32 5080175 YP_001183387.1 CDS Sputcn32_1865 NC_009438.1 2133770 2134624 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(2133770..2134624) Shewanella putrefaciens CN-32 5080176 YP_001183388.1 CDS Sputcn32_1866 NC_009438.1 2134935 2136407 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2134935..2136407 Shewanella putrefaciens CN-32 5080177 YP_001183389.1 CDS Sputcn32_1867 NC_009438.1 2136417 2137115 D TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase 2136417..2137115 Shewanella putrefaciens CN-32 5080178 YP_001183390.1 CDS Sputcn32_1868 NC_009438.1 2137125 2138966 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2137125..2138966 Shewanella putrefaciens CN-32 5080179 YP_001183391.1 CDS Sputcn32_1869 NC_009438.1 2138944 2139627 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2138944..2139627 Shewanella putrefaciens CN-32 5080180 YP_001183392.1 CDS Sputcn32_1870 NC_009438.1 2139817 2141166 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2139817..2141166) Shewanella putrefaciens CN-32 5080181 YP_001183393.1 CDS Sputcn32_1871 NC_009438.1 2141192 2141779 R KEGG: shm:Shewmr7_1934 metal dependent phosphohydrolase; hypothetical protein complement(2141192..2141779) Shewanella putrefaciens CN-32 5080182 YP_001183394.1 CDS Sputcn32_1872 NC_009438.1 2142062 2143276 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2142062..2143276) Shewanella putrefaciens CN-32 5080183 YP_001183395.1 CDS Sputcn32_1873 NC_009438.1 2144062 2145444 D PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1936 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 2144062..2145444 Shewanella putrefaciens CN-32 5080184 YP_001183396.1 CDS Sputcn32_1874 NC_009438.1 2145658 2146479 D KEGG: she:Shewmr4_1801 hypothetical protein; hypothetical protein 2145658..2146479 Shewanella putrefaciens CN-32 5080185 YP_001183397.1 CDS Sputcn32_1875 NC_009438.1 2146661 2147221 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2146661..2147221) Shewanella putrefaciens CN-32 5080186 YP_001183398.1 CDS Sputcn32_1876 NC_009438.1 2147266 2148444 R KEGG: shm:Shewmr7_1938 hypothetical protein; hypothetical protein complement(2147266..2148444) Shewanella putrefaciens CN-32 5080187 YP_001183399.1 CDS Sputcn32_1877 NC_009438.1 2148554 2149081 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2148554..2149081) Shewanella putrefaciens CN-32 5080188 YP_001183400.1 CDS Sputcn32_1878 NC_009438.1 2149138 2149410 R KEGG: shm:Shewmr7_1940 CopG domain protein DNA-binding domain protein; LexA regulated protein complement(2149138..2149410) Shewanella putrefaciens CN-32 5080189 YP_001183401.1 CDS Sputcn32_1879 NC_009438.1 2149422 2149643 R KEGG: shm:Shewmr7_1941 hypothetical protein; hypothetical protein complement(2149422..2149643) Shewanella putrefaciens CN-32 5080190 YP_001183402.1 CDS Sputcn32_1880 NC_009438.1 2149745 2150521 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: shm:Shewmr7_1942 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(2149745..2150521) Shewanella putrefaciens CN-32 5080191 YP_001183403.1 CDS Sputcn32_1881 NC_009438.1 2150804 2151361 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 2150804..2151361 Shewanella putrefaciens CN-32 5080192 YP_001183404.1 CDS Sputcn32_1882 NC_009438.1 2151408 2153060 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2151408..2153060 Shewanella putrefaciens CN-32 5080193 YP_001183405.1 CDS Sputcn32_1883 NC_009438.1 2153144 2153623 R KEGG: son:SO2337 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(2153144..2153623) Shewanella putrefaciens CN-32 5080194 YP_001183406.1 CDS Sputcn32_1884 NC_009438.1 2153920 2154954 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 2153920..2154954 Shewanella putrefaciens CN-32 5080195 YP_001183407.1 CDS Sputcn32_1885 NC_009438.1 2155117 2156295 D PFAM: dehydrogenase, E1 component; KEGG: shm:Shewmr7_1947 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase 2155117..2156295 Shewanella putrefaciens CN-32 5080196 YP_001183408.1 CDS Sputcn32_1886 NC_009438.1 2156299 2157276 D PFAM: Transketolase, central region; Transketolase domain protein; KEGG: shm:Shewmr7_1948 transketolase, central region; transketolase, central region 2156299..2157276 Shewanella putrefaciens CN-32 5080197 YP_001183409.1 CDS Sputcn32_1887 NC_009438.1 2157286 2158908 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1949 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase 2157286..2158908 Shewanella putrefaciens CN-32 5080198 YP_001183410.1 CDS Sputcn32_1888 NC_009438.1 2159041 2160123 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2159041..2160123 Shewanella putrefaciens CN-32 5080199 YP_001183411.1 CDS Sputcn32_1889 NC_009438.1 2160282 2161292 R KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2160282..2161292) Shewanella putrefaciens CN-32 5080200 YP_001183412.1 CDS Sputcn32_1890 NC_009438.1 2161499 2162344 R KEGG: she:Shewmr4_2022 hypothetical protein; hypothetical protein complement(2161499..2162344) Shewanella putrefaciens CN-32 5080201 YP_001183413.1 CDS Sputcn32_1891 NC_009438.1 2162590 2164023 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 2162590..2164023 Shewanella putrefaciens CN-32 5080202 YP_001183414.1 CDS Sputcn32_1892 NC_009438.1 2165570 2167024 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein 2165570..2167024 Shewanella putrefaciens CN-32 5078512 YP_001183415.1 CDS Sputcn32_1893 NC_009438.1 2167148 2167696 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; hypothetical protein 2167148..2167696 Shewanella putrefaciens CN-32 5078513 YP_001183416.1 CDS Sputcn32_1894 NC_009438.1 2167647 2168093 R KEGG: son:SO2111 hypothetical protein; hypothetical protein complement(2167647..2168093) Shewanella putrefaciens CN-32 5078514 YP_001183417.1 CDS Sputcn32_1895 NC_009438.1 2168383 2168670 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2168383..2168670 Shewanella putrefaciens CN-32 5078515 YP_001183418.1 CDS Sputcn32_1896 NC_009438.1 2168810 2172727 R PFAM: protein of unknown function DUF490; KEGG: she:Shewmr4_1835 protein of unknown function DUF490; hypothetical protein complement(2168810..2172727) Shewanella putrefaciens CN-32 5078516 YP_001183419.1 CDS Sputcn32_1897 NC_009438.1 2172724 2174589 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) complement(2172724..2174589) Shewanella putrefaciens CN-32 5078517 YP_001183420.1 CDS Sputcn32_1898 NC_009438.1 2174698 2175729 D PFAM: peptidase T2, asparaginase 2; KEGG: shm:Shewmr7_2140 peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 2174698..2175729 Shewanella putrefaciens CN-32 5078518 YP_001183421.1 CDS Sputcn32_1899 NC_009438.1 2175852 2176268 D PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_2139 putative signal transduction protein with CBS domains; signal transduction protein 2175852..2176268 Shewanella putrefaciens CN-32 5078519 YP_001183422.1 CDS Sputcn32_1900 NC_009438.1 2176363 2180244 D KEGG: shm:Shewmr7_2138 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 2176363..2180244 Shewanella putrefaciens CN-32 5078520 YP_001183423.1 CDS Sputcn32_1901 NC_009438.1 2180768 2180926 D PFAM: periplasmic nitrate reductase NapE; KEGG: shm:Shewmr7_2137 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 2180768..2180926 Shewanella putrefaciens CN-32 5078521 YP_001183424.1 CDS Sputcn32_1902 NC_009438.1 2180970 2181227 D PFAM: NapD family protein; KEGG: shm:Shewmr7_2136 NapD family protein; NapD family protein 2180970..2181227 Shewanella putrefaciens CN-32 5078522 YP_001183425.1 CDS Sputcn32_1903 NC_009438.1 2181230 2183719 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2181230..2183719 Shewanella putrefaciens CN-32 5078523 YP_001183426.1 CDS Sputcn32_1904 NC_009438.1 2183730 2184215 D PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: she:Shewmr4_1843 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 2183730..2184215 Shewanella putrefaciens CN-32 5078524 YP_001183427.1 CDS Sputcn32_1905 NC_009438.1 2184224 2184811 D TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: shm:Shewmr7_2133 periplasmic nitrate (or nitrite) reductase C-type cytochrome, NapC/NirT family; NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome 2184224..2184811 Shewanella putrefaciens CN-32 5078525 YP_001183428.1 CDS Sputcn32_1906 NC_009438.1 2184956 2185336 D KEGG: rba:RB11509 hypothetical protein; hypothetical protein 2184956..2185336 Shewanella putrefaciens CN-32 5078526 YP_001183429.1 CDS Sputcn32_1907 NC_009438.1 2185333 2185683 D KEGG: son:SO2234 hypothetical protein; hypothetical protein 2185333..2185683 Shewanella putrefaciens CN-32 5078527 YP_001183430.1 CDS Sputcn32_1908 NC_009438.1 2185771 2186931 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: cps:CPS_2133 hypothetical protein; cupin 4 family protein 2185771..2186931 Shewanella putrefaciens CN-32 5078528 YP_001183431.1 CDS Sputcn32_1909 NC_009438.1 2187050 2188441 R PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: shm:Shewmr7_2111 sodium/sulphate symporter; sodium/sulfate symporter complement(2187050..2188441) Shewanella putrefaciens CN-32 5078529 YP_001183432.1 CDS Sputcn32_1910 NC_009438.1 2188522 2189322 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: shm:Shewmr7_2110 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 2188522..2189322 Shewanella putrefaciens CN-32 5078530 YP_001183433.1 CDS Sputcn32_1911 NC_009438.1 2189376 2189669 D PFAM: YCII-related; KEGG: son:SO2457 hypothetical protein; hypothetical protein 2189376..2189669 Shewanella putrefaciens CN-32 5078531 YP_001183434.1 CDS Sputcn32_1912 NC_009438.1 2190283 2191248 D KEGG: son:SO2451 hypothetical protein; hypothetical protein 2190283..2191248 Shewanella putrefaciens CN-32 5078532 YP_001183435.1 CDS Sputcn32_1913 NC_009438.1 2191317 2191766 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: shm:Shewmr7_2104 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(2191317..2191766) Shewanella putrefaciens CN-32 5078533 YP_001183436.1 CDS Sputcn32_1914 NC_009438.1 2191804 2192700 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: she:Shewmr4_1875 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein complement(2191804..2192700) Shewanella putrefaciens CN-32 5078534 YP_001183437.1 CDS Sputcn32_1915 NC_009438.1 2192945 2193814 R PFAM: UspA domain protein; KEGG: sfr:Sfri_2734 hypothetical protein; UspA domain-containing protein complement(2192945..2193814) Shewanella putrefaciens CN-32 5078535 YP_001183438.1 CDS Sputcn32_1916 NC_009438.1 2194131 2194868 D KEGG: son:SO2449 hypothetical protein; hypothetical protein 2194131..2194868 Shewanella putrefaciens CN-32 5078536 YP_001183439.1 CDS Sputcn32_1917 NC_009438.1 2195123 2198209 D KEGG: cvi:CV2953 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2195123..2198209 Shewanella putrefaciens CN-32 5078537 YP_001183440.1 CDS Sputcn32_1918 NC_009438.1 2198330 2198863 D PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein; NUDIX hydrolase 2198330..2198863 Shewanella putrefaciens CN-32 5078538 YP_001183441.1 CDS Sputcn32_1919 NC_009438.1 2198919 2199413 D PFAM: DTW domain containing protein; KEGG: sfr:Sfri_1306 DTW domain containing protein; DTW domain-containing protein 2198919..2199413 Shewanella putrefaciens CN-32 5078539 YP_001183442.1 CDS Sputcn32_1920 NC_009438.1 2199464 2200147 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: she:Shewmr4_1879 channel protein, hemolysin III family; hemolysin III family channel protein complement(2199464..2200147) Shewanella putrefaciens CN-32 5078540 YP_001183443.1 CDS Sputcn32_1921 NC_009438.1 2200525 2201613 D KEGG: son:SO2446 hypothetical protein; hypothetical protein 2200525..2201613 Shewanella putrefaciens CN-32 5078541 YP_001183444.1 CDS Sputcn32_1922 NC_009438.1 2202079 2204217 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2202079..2204217 Shewanella putrefaciens CN-32 5078542 YP_001183445.1 CDS Sputcn32_1923 NC_009438.1 2204250 2206163 D KEGG: shm:Shewmr7_2096 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; thiamine-phosphate pyrophosphorylase 2204250..2206163 Shewanella putrefaciens CN-32 5078543 YP_001183446.1 CDS Sputcn32_1924 NC_009438.1 2206147 2207058 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: she:Shewmr4_1883 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2206147..2207058 Shewanella putrefaciens CN-32 5078544 YP_001183447.1 CDS Sputcn32_1925 NC_009438.1 2207060 2207263 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS 2207060..2207263 Shewanella putrefaciens CN-32 5078545 YP_001183448.1 CDS thiG NC_009438.1 2207265 2208029 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2207265..2208029 Shewanella putrefaciens CN-32 5078546 YP_001183449.1 CDS thiH NC_009438.1 2208026 2209141 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2208026..2209141 Shewanella putrefaciens CN-32 5078547 YP_001183450.1 CDS Sputcn32_1928 NC_009438.1 2209243 2209506 D KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2209243..2209506 Shewanella putrefaciens CN-32 5078548 YP_001183451.1 CDS Sputcn32_1929 NC_009438.1 2209512 2211308 D KEGG: she:Shewmr4_1888 SrpA-related protein; SrpA-like protein 2209512..2211308 Shewanella putrefaciens CN-32 5078549 YP_001183452.1 CDS Sputcn32_1930 NC_009438.1 2211352 2212263 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2211352..2212263) Shewanella putrefaciens CN-32 5078550 YP_001183453.1 CDS Sputcn32_1931 NC_009438.1 2212370 2214121 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_2087 hypothetical protein; peptidase M3A and M3B, thimet/oligopeptidase F complement(2212370..2214121) Shewanella putrefaciens CN-32 5078551 YP_001183454.1 CDS Sputcn32_1932 NC_009438.1 2214114 2215112 R TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: shm:Shewmr7_2083 putative methyltransferase; putative methyltransferase complement(2214114..2215112) Shewanella putrefaciens CN-32 5078552 YP_001183455.1 CDS Sputcn32_1933 NC_009438.1 2215109 2215840 R TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_1896 putative methyltransferase; putative methyltransferase complement(2215109..2215840) Shewanella putrefaciens CN-32 5078553 YP_001183456.1 CDS Sputcn32_1934 NC_009438.1 2215990 2218803 D KEGG: she:Shewmr4_1897 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 2215990..2218803 Shewanella putrefaciens CN-32 5078554 YP_001183457.1 CDS aspS NC_009438.1 2218988 2220766 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2218988..2220766 Shewanella putrefaciens CN-32 5078555 YP_001183458.1 CDS Sputcn32_1936 NC_009438.1 2221006 2221752 D PFAM: protein of unknown function DUF28; KEGG: shm:Shewmr7_2079 protein of unknown function DUF28; hypothetical protein 2221006..2221752 Shewanella putrefaciens CN-32 5078384 YP_001183459.1 CDS ruvC NC_009438.1 2221856 2222377 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2221856..2222377 Shewanella putrefaciens CN-32 5078385 YP_001183460.1 CDS ruvA NC_009438.1 2222374 2222991 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2222374..2222991 Shewanella putrefaciens CN-32 5078386 YP_001183461.1 CDS ruvB NC_009438.1 2223005 2224009 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2223005..2224009 Shewanella putrefaciens CN-32 5078387 YP_001183462.1 CDS Sputcn32_1940 NC_009438.1 2224931 2227447 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_1903 TonB-dependent receptor; TonB-dependent receptor 2224931..2227447 Shewanella putrefaciens CN-32 5078388 YP_001183463.1 CDS Sputcn32_1941 NC_009438.1 2227617 2228327 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator 2227617..2228327 Shewanella putrefaciens CN-32 5078389 YP_001183464.1 CDS Sputcn32_1942 NC_009438.1 2228523 2229650 D PFAM: peptidase M14, carboxypeptidase A; KEGG: shm:Shewmr7_2073 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2228523..2229650 Shewanella putrefaciens CN-32 5078390 YP_001183465.1 CDS Sputcn32_1943 NC_009438.1 2229662 2229979 D KEGG: shm:Shewmr7_2072 hypothetical protein; hypothetical protein 2229662..2229979 Shewanella putrefaciens CN-32 5078391 YP_001183466.1 CDS Sputcn32_1944 NC_009438.1 2229976 2230257 D PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein 2229976..2230257 Shewanella putrefaciens CN-32 5078392 YP_001183467.1 CDS Sputcn32_1945 NC_009438.1 2230560 2231753 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2230560..2231753 Shewanella putrefaciens CN-32 5078393 YP_001183468.1 CDS Sputcn32_1946 NC_009438.1 2231813 2232736 R PFAM: protein of unknown function UPF0052 and CofD; KEGG: shm:Shewmr7_1956 hypothetical protein; hypothetical protein complement(2231813..2232736) Shewanella putrefaciens CN-32 5078394 YP_001183469.1 CDS Sputcn32_1947 NC_009438.1 2233067 2233879 D KEGG: she:Shewmr4_2018 bax protein, putative; bax protein 2233067..2233879 Shewanella putrefaciens CN-32 5078395 YP_001183470.1 CDS Sputcn32_1948 NC_009438.1 2233866 2234495 D KEGG: son:SO2353 hypothetical protein; hypothetical protein 2233866..2234495 Shewanella putrefaciens CN-32 5078396 YP_001183471.1 CDS Sputcn32_1949 NC_009438.1 2234582 2235514 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(2234582..2235514) Shewanella putrefaciens CN-32 5078397 YP_001183472.1 CDS Sputcn32_1950 NC_009438.1 2235603 2236535 R with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE complement(2235603..2236535) Shewanella putrefaciens CN-32 5078398 YP_001183473.1 CDS Sputcn32_1951 NC_009438.1 2236711 2237463 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator complement(2236711..2237463) Shewanella putrefaciens CN-32 5078399 YP_001183474.1 CDS Sputcn32_1952 NC_009438.1 2237519 2238211 R KEGG: son:SO2357 hypothetical protein; hypothetical protein complement(2237519..2238211) Shewanella putrefaciens CN-32 5078400 YP_001183475.1 CDS Sputcn32_1953 NC_009438.1 2238208 2238456 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: shm:Shewmr7_1963 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(2238208..2238456) Shewanella putrefaciens CN-32 5078401 YP_001183476.1 CDS Sputcn32_1954 NC_009438.1 2238496 2240895 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: she:Shewmr4_2011 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(2238496..2240895) Shewanella putrefaciens CN-32 5078402 YP_001183477.1 CDS Sputcn32_1955 NC_009438.1 2240918 2241397 R KEGG: son:SO2360 hypothetical protein; hypothetical protein complement(2240918..2241397) Shewanella putrefaciens CN-32 5078403 YP_001183478.1 CDS Sputcn32_1956 NC_009438.1 2241506 2242474 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_1966 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III complement(2241506..2242474) Shewanella putrefaciens CN-32 5078404 YP_001183479.1 CDS Sputcn32_1957 NC_009438.1 2242474 2242650 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: shm:Shewmr7_1967 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit complement(2242474..2242650) Shewanella putrefaciens CN-32 5078405 YP_001183480.1 CDS Sputcn32_1958 NC_009438.1 2242662 2243288 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(2242662..2243288) Shewanella putrefaciens CN-32 5078406 YP_001183481.1 CDS Sputcn32_1959 NC_009438.1 2243301 2244737 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(2243301..2244737) Shewanella putrefaciens CN-32 5078407 YP_001183482.1 CDS Sputcn32_1960 NC_009438.1 2244994 2245449 D KEGG: son:SO2365 hypothetical protein; hypothetical protein 2244994..2245449 Shewanella putrefaciens CN-32 5078408 YP_001183483.1 CDS Sputcn32_1962 NC_009438.1 2245675 2248464 R PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3470 transposase Tn3 family protein; transposase Tn3 family protein complement(2245675..2248464) Shewanella putrefaciens CN-32 5078410 YP_001183484.1 CDS Sputcn32_1963 NC_009438.1 2248484 2248768 D PFAM: transposase IS3/IS911 family protein; KEGG: vpa:VP1788 putative transposase; transposase IS3/IS911 family protein 2248484..2248768 Shewanella putrefaciens CN-32 5078411 YP_001183485.1 CDS Sputcn32_1964 NC_009438.1 2248819 2249634 D PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit 2248819..2249634 Shewanella putrefaciens CN-32 5078412 YP_001183486.1 CDS Sputcn32_1965 NC_009438.1 2249791 2250759 R PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2614 putative efflux protein; bile acid:sodium symporter complement(2249791..2250759) Shewanella putrefaciens CN-32 5078413 YP_001183487.1 CDS Sputcn32_1966 NC_009438.1 2250873 2252921 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: chu:CHU_1510 cation-transporting ATPase; possible zinc-transporting ATPase; heavy metal translocating P-type ATPase complement(2250873..2252921) Shewanella putrefaciens CN-32 5078414 YP_001183488.1 CDS Sputcn32_1967 NC_009438.1 2252978 2253484 R hypothetical protein complement(2252978..2253484) Shewanella putrefaciens CN-32 5078415 YP_001183489.1 CDS Sputcn32_1968 NC_009438.1 2253506 2256628 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sde:Sde_1955 cation efflux system protein; CzcA family heavy metal efflux protein complement(2253506..2256628) Shewanella putrefaciens CN-32 5078416 YP_001183490.1 CDS Sputcn32_1969 NC_009438.1 2256638 2257657 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_1956 hypothetical protein; biotin/lipoyl attachment domain-containing protein complement(2256638..2257657) Shewanella putrefaciens CN-32 5078417 YP_001183491.1 CDS Sputcn32_1970 NC_009438.1 2257736 2258980 R PFAM: outer membrane efflux protein; KEGG: sde:Sde_1958 aconitate hydratase 1; outer membrane efflux protein complement(2257736..2258980) Shewanella putrefaciens CN-32 5078418 YP_001183492.1 CDS Sputcn32_1971 NC_009438.1 2259032 2259397 R hypothetical protein complement(2259032..2259397) Shewanella putrefaciens CN-32 5078419 YP_001183493.1 CDS Sputcn32_1972 NC_009438.1 2259451 2260356 R KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease complement(2259451..2260356) Shewanella putrefaciens CN-32 5078420 YP_001183494.1 CDS Sputcn32_1973 NC_009438.1 2260379 2260843 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 2260379..2260843 Shewanella putrefaciens CN-32 5078421 YP_001183495.1 CDS Sputcn32_1974 NC_009438.1 2260875 2261783 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tcx:Tcr_1429 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2260875..2261783 Shewanella putrefaciens CN-32 5078422 YP_001183496.1 CDS Sputcn32_1975 NC_009438.1 2261785 2262111 D PFAM: protein of unknown function UPF0060; KEGG: abo:ABO_1373 hypothetical protein; hypothetical protein 2261785..2262111 Shewanella putrefaciens CN-32 5078423 YP_001183497.1 CDS Sputcn32_1977 NC_009438.1 2262587 2262940 D hypothetical protein 2262587..2262940 Shewanella putrefaciens CN-32 5078425 YP_001183498.1 CDS Sputcn32_1978 NC_009438.1 2263084 2264721 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ilo:IL1649 membrane hydrolase of alkaline phosphatase superfamily; sulfatase complement(2263084..2264721) Shewanella putrefaciens CN-32 5078426 YP_001183499.1 CDS Sputcn32_1979 NC_009438.1 2265107 2267098 R PFAM: sulfatase; KEGG: mfa:Mfla_1399 sulfatase; sulfatase complement(2265107..2267098) Shewanella putrefaciens CN-32 5078427 YP_001183500.1 CDS Sputcn32_1980 NC_009438.1 2267201 2267557 D PFAM: diacylglycerol kinase; KEGG: sdy:SDY_4532 diacylglycerol kinase; diacylglycerol kinase 2267201..2267557 Shewanella putrefaciens CN-32 5078428 YP_001183501.1 CDS Sputcn32_1981 NC_009438.1 2267575 2268243 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ilo:IL1648 response regulator (CheY, wHTH domains); two component transcriptional regulator 2267575..2268243 Shewanella putrefaciens CN-32 5078429 YP_001183502.1 CDS Sputcn32_1982 NC_009438.1 2268233 2269627 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ilo:IL1647 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2268233..2269627 Shewanella putrefaciens CN-32 5078430 YP_001183503.1 CDS Sputcn32_1983 NC_009438.1 2269845 2270813 R PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2614 putative efflux protein; bile acid:sodium symporter complement(2269845..2270813) Shewanella putrefaciens CN-32 5078431 YP_001183504.1 CDS Sputcn32_1984 NC_009438.1 2271082 2272257 R KEGG: psp:PSPPH_2263 cointegrate resolution protein T; cointegrate resolution protein T complement(2271082..2272257) Shewanella putrefaciens CN-32 5078432 YP_001183505.1 CDS Sputcn32_1985 NC_009438.1 2272473 2272802 D KEGG: vch:VCA0486 hypothetical protein; hypothetical protein 2272473..2272802 Shewanella putrefaciens CN-32 5078433 YP_001183506.1 CDS Sputcn32_1986 NC_009438.1 2272803 2273318 D KEGG: vch:VCA0487 hypothetical protein; hypothetical protein 2272803..2273318 Shewanella putrefaciens CN-32 5078188 YP_001183507.1 CDS Sputcn32_1987 NC_009438.1 2273343 2274302 D PFAM: phage integrase family protein; KEGG: pfo:Pfl_2926 phage integrase; phage integrase family protein 2273343..2274302 Shewanella putrefaciens CN-32 5078189 YP_001183508.1 CDS Sputcn32_1988 NC_009438.1 2274417 2275730 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_1971 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase complement(2274417..2275730) Shewanella putrefaciens CN-32 5078190 YP_001183509.1 CDS Sputcn32_1989 NC_009438.1 2275768 2278848 R PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3470 transposase Tn3 family protein; transposase Tn3 family protein complement(2275768..2278848) Shewanella putrefaciens CN-32 5078191 YP_001183510.1 CDS Sputcn32_1990 NC_009438.1 2278872 2279183 R PFAM: plasmid stabilization system; KEGG: sfr:Sfri_3471 plasmid stabilization system; plasmid stabilization system protein complement(2278872..2279183) Shewanella putrefaciens CN-32 5078192 YP_001183511.1 CDS Sputcn32_1991 NC_009438.1 2279183 2279443 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sfr:Sfri_3472 prevent-host-death family protein; prevent-host-death family protein complement(2279183..2279443) Shewanella putrefaciens CN-32 5078193 YP_001183512.1 CDS Sputcn32_1992 NC_009438.1 2279613 2280233 D PFAM: Resolvase, N-terminal domain; KEGG: sfr:Sfri_3477 resolvase, N-terminal domain protein; resolvase domain-containing protein 2279613..2280233 Shewanella putrefaciens CN-32 5078194 YP_001183513.1 CDS Sputcn32_1993 NC_009438.1 2280351 2280683 R KEGG: sil:SPO2248 DnaK suppressor protein, putative; TraR/DksA family transcriptional regulator complement(2280351..2280683) Shewanella putrefaciens CN-32 5078195 YP_001183514.1 CDS Sputcn32_1994 NC_009438.1 2280774 2281628 R PFAM: UspA domain protein; KEGG: sfr:Sfri_0791 UspA domain protein; UspA domain-containing protein complement(2280774..2281628) Shewanella putrefaciens CN-32 5078196 YP_001183515.1 CDS Sputcn32_1995 NC_009438.1 2281663 2283153 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter; sulfate transporter complement(2281663..2283153) Shewanella putrefaciens CN-32 5078197 YP_001183516.1 CDS Sputcn32_1996 NC_009438.1 2283645 2283881 R KEGG: shm:Shewmr7_1971 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver protein complement(2283645..2283881) Shewanella putrefaciens CN-32 5078198 YP_001183517.1 CDS Sputcn32_1997 NC_009438.1 2284054 2284284 D KEGG: shm:Shewmr7_1972 hypothetical protein; hypothetical protein 2284054..2284284 Shewanella putrefaciens CN-32 5078199 YP_001183518.1 CDS Sputcn32_1998 NC_009438.1 2284546 2284731 R hypothetical protein complement(2284546..2284731) Shewanella putrefaciens CN-32 5078200 YP_001183519.1 CDS Sputcn32_1999 NC_009438.1 2285128 2286402 R uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC complement(2285128..2286402) Shewanella putrefaciens CN-32 5078202 YP_001183520.1 CDS Sputcn32_2000 NC_009438.1 2286431 2287420 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1974 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator 2286431..2287420 Shewanella putrefaciens CN-32 5078203 YP_001183521.1 CDS Sputcn32_2001 NC_009438.1 2287659 2288318 D PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein 2287659..2288318 Shewanella putrefaciens CN-32 5078204 YP_001183522.1 CDS Sputcn32_2002 NC_009438.1 2288379 2288768 D PFAM: DsrE family protein; KEGG: shm:Shewmr7_2004 DsrE family protein; DsrE family protein 2288379..2288768 Shewanella putrefaciens CN-32 5078205 YP_001183523.1 CDS Sputcn32_2003 NC_009438.1 2288783 2289139 D PFAM: DsrE family protein; KEGG: shm:Shewmr7_2005 DsrE family protein; DsrE family protein 2288783..2289139 Shewanella putrefaciens CN-32 5078206 YP_001183524.1 CDS Sputcn32_2004 NC_009438.1 2289139 2289420 D PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrH family protein 2289139..2289420 Shewanella putrefaciens CN-32 5078207 YP_001183525.1 CDS Sputcn32_2005 NC_009438.1 2289414 2289752 D PFAM: DsrC family protein; KEGG: she:Shewmr4_1969 DsrC family protein; DsrC family protein 2289414..2289752 Shewanella putrefaciens CN-32 5078208 YP_001183526.1 CDS Sputcn32_2006 NC_009438.1 2289858 2289980 R KEGG: shm:Shewmr7_2008 hypothetical protein; hypothetical protein complement(2289858..2289980) Shewanella putrefaciens CN-32 5078209 YP_001183527.1 CDS Sputcn32_2007 NC_009438.1 2289998 2291284 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2289998..2291284) Shewanella putrefaciens CN-32 5078210 YP_001183528.1 CDS Sputcn32_2008 NC_009438.1 2291303 2291677 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2291303..2291677) Shewanella putrefaciens CN-32 5078211 YP_001183529.1 CDS Sputcn32_2009 NC_009438.1 2291670 2293001 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA complement(2291670..2293001) Shewanella putrefaciens CN-32 5078212 YP_001183530.1 CDS Sputcn32_2010 NC_009438.1 2293010 2293636 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: shm:Shewmr7_2012 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(2293010..2293636) Shewanella putrefaciens CN-32 5078213 YP_001183531.1 CDS Sputcn32_2011 NC_009438.1 2293713 2296403 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: shm:Shewmr7_2013 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(2293713..2296403) Shewanella putrefaciens CN-32 5078214 YP_001183532.1 CDS Sputcn32_2012 NC_009438.1 2296733 2297239 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(2296733..2297239) Shewanella putrefaciens CN-32 5078215 YP_001183533.1 CDS Sputcn32_2013 NC_009438.1 2297419 2298534 D TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: shm:Shewmr7_2015 alanine dehydrogenase; alanine dehydrogenase 2297419..2298534 Shewanella putrefaciens CN-32 5078216 YP_001183534.1 CDS Sputcn32_2014 NC_009438.1 2298788 2299741 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase 2298788..2299741 Shewanella putrefaciens CN-32 5078217 YP_001183535.1 CDS rplT NC_009438.1 2299991 2300347 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2299991..2300347) Shewanella putrefaciens CN-32 5078218 YP_001183536.1 CDS rpmI NC_009438.1 2300364 2300558 R PFAM: ribosomal protein L35; KEGG: sfr:Sfri_2026 ribosomal protein L35; 50S ribosomal protein L35 complement(2300364..2300558) Shewanella putrefaciens CN-32 5078219 YP_001183537.1 CDS infC NC_009438.1 2300642 2301073 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(2300642..2301073) Shewanella putrefaciens CN-32 5078220 YP_001183538.1 CDS Sputcn32_2018 NC_009438.1 2301188 2303116 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(2301188..2303116) Shewanella putrefaciens CN-32 5078221 YP_001183539.1 CDS Sputcn32_2019 NC_009438.1 2303517 2303717 D KEGG: shm:Shewmr7_2023 hypothetical protein; hypothetical protein 2303517..2303717 Shewanella putrefaciens CN-32 5078222 YP_001183540.1 CDS Sputcn32_2020 NC_009438.1 2303714 2304343 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2303714..2304343) Shewanella putrefaciens CN-32 5078223 YP_001183541.1 CDS Sputcn32_2021 NC_009438.1 2304378 2305757 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_2025 MATE efflux family protein; MATE efflux family protein 2304378..2305757 Shewanella putrefaciens CN-32 5078224 YP_001183542.1 CDS Sputcn32_2022 NC_009438.1 2305757 2306008 D hypothetical protein 2305757..2306008 Shewanella putrefaciens CN-32 5078225 YP_001183543.1 CDS Sputcn32_2023 NC_009438.1 2306746 2307297 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2306746..2307297 Shewanella putrefaciens CN-32 5078228 YP_001183544.1 CDS Sputcn32_2024 NC_009438.1 2307378 2307653 R KEGG: vfi:VF0709 hypothetical protein; hypothetical protein complement(2307378..2307653) Shewanella putrefaciens CN-32 5078229 YP_001183545.1 CDS Sputcn32_2025 NC_009438.1 2307672 2309651 R KEGG: shm:Shewmr7_2030 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ complement(2307672..2309651) Shewanella putrefaciens CN-32 5078230 YP_001183546.1 CDS Sputcn32_2026 NC_009438.1 2309863 2310186 R KEGG: she:Shewmr4_1945 hypothetical protein; hypothetical protein complement(2309863..2310186) Shewanella putrefaciens CN-32 5078231 YP_001183547.1 CDS Sputcn32_2027 NC_009438.1 2310441 2312498 D PFAM: protein of unknown function DUF839; KEGG: shm:Shewmr7_2034 twin-arginine translocation pathway signal; hypothetical protein 2310441..2312498 Shewanella putrefaciens CN-32 5078232 YP_001183548.1 CDS Sputcn32_2028 NC_009438.1 2312593 2313363 R PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein complement(2312593..2313363) Shewanella putrefaciens CN-32 5078233 YP_001183549.1 CDS ampC NC_009438.1 2313524 2314708 D PFAM: beta-lactamase; KEGG: shm:Shewmr7_2039 beta-lactamase; beta-lactamase 2313524..2314708 Shewanella putrefaciens CN-32 5078234 YP_001183550.1 CDS emrD NC_009438.1 2315052 2316320 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 2315052..2316320 Shewanella putrefaciens CN-32 5079456 YP_001183551.1 CDS pssA NC_009438.1 2316377 2317690 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(2316377..2317690) Shewanella putrefaciens CN-32 5079457 YP_001183552.1 CDS Sputcn32_2032 NC_009438.1 2317702 2318034 R KEGG: shm:Shewmr7_2042 hypothetical protein; hypothetical protein complement(2317702..2318034) Shewanella putrefaciens CN-32 5079458 YP_001183553.1 CDS Sputcn32_2033 NC_009438.1 2318334 2318510 D KEGG: shm:Shewmr7_2043 hypothetical protein; hypothetical protein 2318334..2318510 Shewanella putrefaciens CN-32 5079459 YP_001183554.1 CDS Sputcn32_2034 NC_009438.1 2318536 2320050 D KEGG: shm:Shewmr7_2044 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 2318536..2320050 Shewanella putrefaciens CN-32 5079460 YP_001183555.1 CDS Sputcn32_2035 NC_009438.1 2320116 2321873 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: she:Shewmr4_1931 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2320116..2321873) Shewanella putrefaciens CN-32 5079461 YP_001183556.1 CDS Sputcn32_2036 NC_009438.1 2322088 2322630 R KEGG: she:Shewmr4_1930 hypothetical protein; hypothetical protein complement(2322088..2322630) Shewanella putrefaciens CN-32 5079462 YP_001183557.1 CDS Sputcn32_2037 NC_009438.1 2322701 2323522 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_2049 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2322701..2323522) Shewanella putrefaciens CN-32 5079463 YP_001183558.1 CDS Sputcn32_2038 NC_009438.1 2323574 2324269 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(2323574..2324269) Shewanella putrefaciens CN-32 5079464 YP_001183559.1 CDS Sputcn32_2039 NC_009438.1 2324315 2325475 R KEGG: son:SO2399 hypothetical protein; hypothetical protein complement(2324315..2325475) Shewanella putrefaciens CN-32 5079465 YP_001183560.1 CDS Sputcn32_2040 NC_009438.1 2325477 2325752 R PFAM: protein of unknown function DUF1049; KEGG: shm:Shewmr7_2052 protein of unknown function DUF1049; hypothetical protein complement(2325477..2325752) Shewanella putrefaciens CN-32 5079466 YP_001183561.1 CDS ihfB NC_009438.1 2325875 2326162 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(2325875..2326162) Shewanella putrefaciens CN-32 5079467 YP_001183562.1 CDS rpsA NC_009438.1 2326238 2327905 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2326238..2327905) Shewanella putrefaciens CN-32 5079468 YP_001183563.1 CDS cmk NC_009438.1 2328009 2328701 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2328009..2328701) Shewanella putrefaciens CN-32 5079469 YP_001183564.1 CDS Sputcn32_2044 NC_009438.1 2328887 2330167 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2328887..2330167) Shewanella putrefaciens CN-32 5079470 YP_001183565.1 CDS Sputcn32_2045 NC_009438.1 2330603 2331793 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2330603..2331793 Shewanella putrefaciens CN-32 5079471 YP_001183566.1 CDS Sputcn32_2046 NC_009438.1 2331841 2332749 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: shm:Shewmr7_1974 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(2331841..2332749) Shewanella putrefaciens CN-32 5079472 YP_001183567.1 CDS Sputcn32_2047 NC_009438.1 2332911 2336249 R PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1999 glycoside hydrolase, family 43; glycoside hydrolase complement(2332911..2336249) Shewanella putrefaciens CN-32 5079473 YP_001183568.1 CDS Sputcn32_2048 NC_009438.1 2336822 2339656 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_1977 TonB-dependent receptor; TonB-dependent receptor 2336822..2339656 Shewanella putrefaciens CN-32 5079474 YP_001183569.1 CDS Sputcn32_2049 NC_009438.1 2339911 2340675 D PFAM: protein of unknown function DUF81; KEGG: she:Shewmr4_1997 protein of unknown function DUF81; hypothetical protein 2339911..2340675 Shewanella putrefaciens CN-32 5079475 YP_001183570.1 CDS Sputcn32_2050 NC_009438.1 2340898 2342784 R PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1996 glycoside hydrolase, family 43; alpha-N-arabinofuranosidase complement(2340898..2342784) Shewanella putrefaciens CN-32 5079476 YP_001183571.1 CDS Sputcn32_2051 NC_009438.1 2342787 2343860 R PFAM: glycoside hydrolase, family 43; KEGG: shm:Shewmr7_1980 arabinan endo-1,5-alpha-L-arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase complement(2342787..2343860) Shewanella putrefaciens CN-32 5079477 YP_001183572.1 CDS Sputcn32_2052 NC_009438.1 2344074 2345489 D TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1994 sugar (glycoside-pentoside-hexuronide) transporter; sugar (glycoside-Pentoside-hexuronide) transporter 2344074..2345489 Shewanella putrefaciens CN-32 5079478 YP_001183573.1 CDS Sputcn32_2053 NC_009438.1 2345517 2346464 D PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0777 ribosomal protein L11 methyltransferase; alpha-N-arabinofuranosidase 2345517..2346464 Shewanella putrefaciens CN-32 5079479 YP_001183574.1 CDS Sputcn32_2054 NC_009438.1 2346523 2348142 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_1735 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2346523..2348142) Shewanella putrefaciens CN-32 5079480 YP_001183575.1 CDS Sputcn32_2055 NC_009438.1 2348364 2349473 R PFAM: glycoside hydrolase, family 43; KEGG: shm:Shewmr7_1984 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase complement(2348364..2349473) Shewanella putrefaciens CN-32 5079481 YP_001183576.1 CDS Sputcn32_2056 NC_009438.1 2349448 2350410 R membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF complement(2349448..2350410) Shewanella putrefaciens CN-32 5079482 YP_001183577.1 CDS Sputcn32_2057 NC_009438.1 2350407 2351525 R PFAM: inner-membrane translocator; KEGG: shm:Shewmr7_1986 inner-membrane translocator; inner-membrane translocator complement(2350407..2351525) Shewanella putrefaciens CN-32 5079483 YP_001183578.1 CDS Sputcn32_2058 NC_009438.1 2351526 2353025 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_1987 ABC transporter related; ABC transporter-like protein complement(2351526..2353025) Shewanella putrefaciens CN-32 5079484 YP_001183579.1 CDS Sputcn32_2059 NC_009438.1 2353059 2354000 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1988 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(2353059..2354000) Shewanella putrefaciens CN-32 5079485 YP_001183580.1 CDS Sputcn32_2060 NC_009438.1 2354124 2355179 R PFAM: Aldose 1-epimerase; KEGG: shm:Shewmr7_1989 aldose 1-epimerase; aldose 1-epimerase complement(2354124..2355179) Shewanella putrefaciens CN-32 5079486 YP_001183581.1 CDS Sputcn32_2061 NC_009438.1 2355282 2356052 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_1984 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2355282..2356052) Shewanella putrefaciens CN-32 5079487 YP_001183582.1 CDS Sputcn32_2062 NC_009438.1 2356112 2357845 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2356112..2357845) Shewanella putrefaciens CN-32 5079488 YP_001183583.1 CDS Sputcn32_2063 NC_009438.1 2358050 2358985 D PFAM: glycoside hydrolase, family 43; KEGG: she:Shewmr4_1982 glycoside hydrolase, family 43; glycoside hydrolase 2358050..2358985 Shewanella putrefaciens CN-32 5079489 YP_001183584.1 CDS Sputcn32_2064 NC_009438.1 2359059 2359775 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_1993 GntR domain protein; GntR family transcriptional regulator complement(2359059..2359775) Shewanella putrefaciens CN-32 5079490 YP_001183585.1 CDS Sputcn32_2065 NC_009438.1 2359979 2360584 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_1994 HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase complement(2359979..2360584) Shewanella putrefaciens CN-32 5079491 YP_001183586.1 CDS Sputcn32_2066 NC_009438.1 2360692 2362209 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(2360692..2362209) Shewanella putrefaciens CN-32 5079492 YP_001183587.1 CDS araD NC_009438.1 2362240 2362935 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(2362240..2362935) Shewanella putrefaciens CN-32 5079493 YP_001183588.1 CDS Sputcn32_2068 NC_009438.1 2362937 2364610 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(2362937..2364610) Shewanella putrefaciens CN-32 5079494 YP_001183589.1 CDS Sputcn32_2069 NC_009438.1 2364950 2366041 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2364950..2366041) Shewanella putrefaciens CN-32 5079495 YP_001183590.1 CDS Sputcn32_2070 NC_009438.1 2366144 2368897 R TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: she:Shewmr4_1919 DNA gyrase, A subunit; DNA gyrase subunit A complement(2366144..2368897) Shewanella putrefaciens CN-32 5079496 YP_001183591.1 CDS Sputcn32_2071 NC_009438.1 2369282 2369992 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2369282..2369992 Shewanella putrefaciens CN-32 5079497 YP_001183592.1 CDS Sputcn32_2072 NC_009438.1 2369994 2370662 D KEGG: shm:Shewmr7_2061 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2369994..2370662 Shewanella putrefaciens CN-32 5079498 YP_001183593.1 CDS Sputcn32_2073 NC_009438.1 2371056 2373344 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2371056..2373344 Shewanella putrefaciens CN-32 5079499 YP_001183594.1 CDS nrdB NC_009438.1 2373409 2374539 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2373409..2374539 Shewanella putrefaciens CN-32 5079500 YP_001183595.1 CDS Sputcn32_2075 NC_009438.1 2374551 2375006 D PFAM: ferredoxin; KEGG: shm:Shewmr7_2064 ferredoxin; ferredoxin 2374551..2375006 Shewanella putrefaciens CN-32 5079501 YP_001183596.1 CDS Sputcn32_2076 NC_009438.1 2375038 2375520 R KEGG: hne:HNE_0837 YCII domain protein; YCII domain-containing protein complement(2375038..2375520) Shewanella putrefaciens CN-32 5079502 YP_001183597.1 CDS Sputcn32_2077 NC_009438.1 2375681 2377699 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(2375681..2377699) Shewanella putrefaciens CN-32 5079503 YP_001183598.1 CDS Sputcn32_2078 NC_009438.1 2377865 2379712 D TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: she:Shewmr4_1909 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type 2377865..2379712 Shewanella putrefaciens CN-32 5079504 YP_001183599.1 CDS ansA NC_009438.1 2379852 2380865 D converts asparagine to aspartate and ammonia; asparaginase 2379852..2380865 Shewanella putrefaciens CN-32 5079505 YP_001183600.1 CDS Sputcn32_2080 NC_009438.1 2381039 2383222 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(2381039..2383222) Shewanella putrefaciens CN-32 5078285 YP_001183601.1 CDS mdoG NC_009438.1 2383246 2384880 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(2383246..2384880) Shewanella putrefaciens CN-32 5078286 YP_001183602.1 CDS Sputcn32_2082 NC_009438.1 2385329 2386723 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; integral membrane sensor signal transduction histidine kinase complement(2385329..2386723) Shewanella putrefaciens CN-32 5078287 YP_001183603.1 CDS Sputcn32_2083 NC_009438.1 2386795 2387454 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator complement(2386795..2387454) Shewanella putrefaciens CN-32 5078288 YP_001183604.1 CDS Sputcn32_2084 NC_009438.1 2387465 2388292 R PFAM: ApbE family lipoprotein; KEGG: shm:Shewmr7_2151 ApbE family lipoprotein; ApbE family lipoprotein complement(2387465..2388292) Shewanella putrefaciens CN-32 5078289 YP_001183605.1 CDS Sputcn32_2085 NC_009438.1 2388531 2389850 R KEGG: shm:Shewmr7_2152 hypothetical protein; hypothetical protein complement(2388531..2389850) Shewanella putrefaciens CN-32 5078290 YP_001183606.1 CDS Sputcn32_2086 NC_009438.1 2389929 2390147 R KEGG: shm:Shewmr7_2153 lipoprotein, putative; putative lipoprotein complement(2389929..2390147) Shewanella putrefaciens CN-32 5078291 YP_001183607.1 CDS Sputcn32_2087 NC_009438.1 2390151 2390618 R PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_2154 redoxin domain protein; redoxin domain-containing protein complement(2390151..2390618) Shewanella putrefaciens CN-32 5078292 YP_001183608.1 CDS Sputcn32_2088 NC_009438.1 2390983 2392119 D KEGG: son:SO2099 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 2390983..2392119 Shewanella putrefaciens CN-32 5078293 YP_001183609.1 CDS Sputcn32_2089 NC_009438.1 2392123 2393826 D PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit 2392123..2393826 Shewanella putrefaciens CN-32 5078294 YP_001183610.1 CDS Sputcn32_2090 NC_009438.1 2393846 2394520 D TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: shm:Shewmr7_2157 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 2393846..2394520 Shewanella putrefaciens CN-32 5078295 YP_001183611.1 CDS Sputcn32_2091 NC_009438.1 2394528 2395091 D TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein 2394528..2395091 Shewanella putrefaciens CN-32 5078296 YP_001183612.1 CDS Sputcn32_2092 NC_009438.1 2395072 2396925 D KEGG: son:SO2095 hypothetical protein; hypothetical protein 2395072..2396925 Shewanella putrefaciens CN-32 5078297 YP_001183613.1 CDS Sputcn32_2093 NC_009438.1 2396956 2399361 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2396956..2399361 Shewanella putrefaciens CN-32 5078298 YP_001183614.1 CDS Sputcn32_2094 NC_009438.1 2399585 2401210 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pat:Patl_2284 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2399585..2401210 Shewanella putrefaciens CN-32 5078299 YP_001183615.1 CDS Sputcn32_2095 NC_009438.1 2401241 2402203 D PFAM: UspA domain protein; KEGG: pat:Patl_2285 UspA; UspA domain-containing protein 2401241..2402203 Shewanella putrefaciens CN-32 5078300 YP_001183616.1 CDS Sputcn32_2096 NC_009438.1 2402272 2403378 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_1872 diguanylate cyclase; diguanylate cyclase complement(2402272..2403378) Shewanella putrefaciens CN-32 5078301 YP_001183617.1 CDS Sputcn32_2097 NC_009438.1 2403446 2405071 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: she:Shewmr4_2103 sulfatase; sulfatase complement(2403446..2405071) Shewanella putrefaciens CN-32 5078302 YP_001183618.1 CDS Sputcn32_2098 NC_009438.1 2405360 2407465 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; prolyl oligopeptidase complement(2405360..2407465) Shewanella putrefaciens CN-32 5078303 YP_001183619.1 CDS Sputcn32_2099 NC_009438.1 2407677 2408126 R PFAM: regulatory protein, MarR; KEGG: shm:Shewmr7_1869 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2407677..2408126) Shewanella putrefaciens CN-32 5078304 YP_001183620.1 CDS Sputcn32_2100 NC_009438.1 2408126 2409289 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: shm:Shewmr7_1868 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2408126..2409289) Shewanella putrefaciens CN-32 5078305 YP_001183621.1 CDS Sputcn32_2101 NC_009438.1 2409824 2410321 D KEGG: son:SO2044 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2409824..2410321 Shewanella putrefaciens CN-32 5078306 YP_001183622.1 CDS Sputcn32_2102 NC_009438.1 2410395 2411018 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(2410395..2411018) Shewanella putrefaciens CN-32 5078307 YP_001183623.1 CDS Sputcn32_2103 NC_009438.1 2411041 2412075 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(2411041..2412075) Shewanella putrefaciens CN-32 5078308 YP_001183624.1 CDS Sputcn32_2104 NC_009438.1 2412318 2413874 D PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 2412318..2413874 Shewanella putrefaciens CN-32 5078309 YP_001183625.1 CDS Sputcn32_2105 NC_009438.1 2413952 2415877 D PFAM: Lytic transglycosylase, catalytic; KEGG: shm:Shewmr7_1863 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 2413952..2415877 Shewanella putrefaciens CN-32 5078310 YP_001183626.1 CDS Sputcn32_2106 NC_009438.1 2416093 2416797 D PFAM: EAL domain protein; KEGG: she:Shewmr4_2112 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2416093..2416797 Shewanella putrefaciens CN-32 5078311 YP_001183627.1 CDS Sputcn32_2107 NC_009438.1 2416944 2417855 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase 2416944..2417855 Shewanella putrefaciens CN-32 5078312 YP_001183628.1 CDS Sputcn32_2108 NC_009438.1 2417927 2418991 D PFAM: protein of unknown function DUF58; KEGG: shm:Shewmr7_1855 protein of unknown function DUF58; hypothetical protein 2417927..2418991 Shewanella putrefaciens CN-32 5078313 YP_001183629.1 CDS Sputcn32_2109 NC_009438.1 2418988 2421117 D PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein 2418988..2421117 Shewanella putrefaciens CN-32 5078314 YP_001183630.1 CDS Sputcn32_2110 NC_009438.1 2421269 2424949 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: she:Shewmr4_1775 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2421269..2424949 Shewanella putrefaciens CN-32 5078315 YP_001183631.1 CDS Sputcn32_2111 NC_009438.1 2424967 2428722 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: shm:Shewmr7_1852 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2424967..2428722 Shewanella putrefaciens CN-32 5078316 YP_001183632.1 CDS Sputcn32_2112 NC_009438.1 2428719 2430779 D KEGG: shm:Shewmr7_1851 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; exodeoxyribonuclease V subunit alpha 2428719..2430779 Shewanella putrefaciens CN-32 5078317 YP_001183633.1 CDS Sputcn32_2113 NC_009438.1 2430792 2431184 D KEGG: son:SO2146 hypothetical protein; hypothetical protein 2430792..2431184 Shewanella putrefaciens CN-32 5078318 YP_001183634.1 CDS Sputcn32_2114 NC_009438.1 2431265 2431903 D KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2431265..2431903 Shewanella putrefaciens CN-32 5078319 YP_001183635.1 CDS Sputcn32_2115 NC_009438.1 2431976 2432698 R KEGG: son:SO2241 hypothetical protein; hypothetical protein complement(2431976..2432698) Shewanella putrefaciens CN-32 5078320 YP_001183636.1 CDS Sputcn32_2116 NC_009438.1 2433058 2434695 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_1845 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2433058..2434695 Shewanella putrefaciens CN-32 5078321 YP_001183637.1 CDS Sputcn32_2117 NC_009438.1 2434828 2435223 D KEGG: shm:Shewmr7_1844 hypothetical protein; hypothetical protein 2434828..2435223 Shewanella putrefaciens CN-32 5078322 YP_001183638.1 CDS Sputcn32_2118 NC_009438.1 2435246 2435503 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 2435246..2435503 Shewanella putrefaciens CN-32 5078323 YP_001183639.1 CDS Sputcn32_2119 NC_009438.1 2435547 2437250 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: she:Shewmr4_1764 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2435547..2437250 Shewanella putrefaciens CN-32 5078324 YP_001183640.1 CDS Sputcn32_2120 NC_009438.1 2437324 2437833 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2437324..2437833 Shewanella putrefaciens CN-32 5078325 YP_001183641.1 CDS Sputcn32_2121 NC_009438.1 2438150 2440018 D PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis protein domain protein; KEGG: vvu:VV21623 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2438150..2440018 Shewanella putrefaciens CN-32 5078326 YP_001183642.1 CDS Sputcn32_2122 NC_009438.1 2440069 2440476 D PFAM: arsenate reductase and related; KEGG: shm:Shewmr7_2120 hypothetical protein; arsenate reductase-like protein 2440069..2440476 Shewanella putrefaciens CN-32 5078327 YP_001183643.1 CDS Sputcn32_2123 NC_009438.1 2440476 2441615 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2440476..2441615 Shewanella putrefaciens CN-32 5078328 YP_001183644.1 CDS Sputcn32_2124 NC_009438.1 2441609 2442325 D PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 2441609..2442325 Shewanella putrefaciens CN-32 5078329 YP_001183645.1 CDS Sputcn32_2125 NC_009438.1 2442381 2443223 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2442381..2443223 Shewanella putrefaciens CN-32 5078330 YP_001183646.1 CDS Sputcn32_2126 NC_009438.1 2443343 2443960 D PFAM: carbonic anhydrase; KEGG: she:Shewmr4_1854 carbonate dehydratase; carbonate dehydratase 2443343..2443960 Shewanella putrefaciens CN-32 5078331 YP_001183647.1 CDS Sputcn32_2127 NC_009438.1 2444193 2444930 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2444193..2444930 Shewanella putrefaciens CN-32 5078332 YP_001183648.1 CDS Sputcn32_2128 NC_009438.1 2444966 2445217 D KEGG: son:SO2479 hypothetical protein; hypothetical protein 2444966..2445217 Shewanella putrefaciens CN-32 5078333 YP_001183649.1 CDS Sputcn32_2129 NC_009438.1 2445331 2445801 R KEGG: shm:Shewmr7_1839 hypothetical protein; hypothetical protein complement(2445331..2445801) Shewanella putrefaciens CN-32 5078334 YP_001183650.1 CDS Sputcn32_2130 NC_009438.1 2446001 2447005 R PFAM: Rhodanese domain protein; KEGG: she:Shewmr4_1760 rhodanese domain protein; hypothetical protein complement(2446001..2447005) Shewanella putrefaciens CN-32 5078335 YP_001183651.1 CDS Sputcn32_2131 NC_009438.1 2447409 2447615 D KEGG: shm:Shewmr7_1836 hypothetical protein; hypothetical protein 2447409..2447615 Shewanella putrefaciens CN-32 5080007 YP_001183652.1 CDS Sputcn32_2132 NC_009438.1 2447681 2449453 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: she:Shewmr4_1755 sulphate transporter; sulfate transporter complement(2447681..2449453) Shewanella putrefaciens CN-32 5080008 YP_001183653.1 CDS Sputcn32_2133 NC_009438.1 2449634 2450260 R KEGG: shm:Shewmr7_1834 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) complement(2449634..2450260) Shewanella putrefaciens CN-32 5080009 YP_001183654.1 CDS Sputcn32_2134 NC_009438.1 2450353 2451717 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: she:Shewmr4_1753 transcriptional regulator, GntR family; GntR family transcriptional regulator 2450353..2451717 Shewanella putrefaciens CN-32 5080010 YP_001183655.1 CDS Sputcn32_2135 NC_009438.1 2451844 2453718 R KEGG: she:Shewmr4_1752 alkaline phosphatase; alkaline phosphatase complement(2451844..2453718) Shewanella putrefaciens CN-32 5080011 YP_001183656.1 CDS Sputcn32_2136 NC_009438.1 2454190 2455410 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1751 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 2454190..2455410 Shewanella putrefaciens CN-32 5080012 YP_001183657.1 CDS Sputcn32_2137 NC_009438.1 2455456 2455692 D hypothetical protein 2455456..2455692 Shewanella putrefaciens CN-32 5080013 YP_001183658.1 CDS Sputcn32_2138 NC_009438.1 2455825 2457543 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: she:Shewmr4_1750 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase 3 catalytic subunit 2455825..2457543 Shewanella putrefaciens CN-32 5080014 YP_001183659.1 CDS ilvH NC_009438.1 2457543 2458037 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2457543..2458037 Shewanella putrefaciens CN-32 5080015 YP_001183660.1 CDS Sputcn32_2140 NC_009438.1 2458108 2458551 R PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 complement(2458108..2458551) Shewanella putrefaciens CN-32 5080016 YP_001183661.1 CDS ndk NC_009438.1 2458789 2459220 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2458789..2459220) Shewanella putrefaciens CN-32 5080017 YP_001183662.1 CDS Sputcn32_2142 NC_009438.1 2459816 2460013 R PFAM: protein of unknown function DUF528; KEGG: shm:Shewmr7_1826 protein of unknown function DUF528; hypothetical protein complement(2459816..2460013) Shewanella putrefaciens CN-32 5080018 YP_001183663.1 CDS Sputcn32_2143 NC_009438.1 2460085 2460990 R TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: shm:Shewmr7_1825 alpha-L-glutamate ligases, RimK family; alpha-L-glutamate ligase complement(2460085..2460990) Shewanella putrefaciens CN-32 5080019 YP_001183664.1 CDS Sputcn32_2144 NC_009438.1 2461149 2461487 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: shm:Shewmr7_1824 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system complement(2461149..2461487) Shewanella putrefaciens CN-32 5080020 YP_001183665.1 CDS hscA NC_009438.1 2461496 2463358 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2461496..2463358) Shewanella putrefaciens CN-32 5080021 YP_001183666.1 CDS hscB NC_009438.1 2463426 2463950 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2463426..2463950) Shewanella putrefaciens CN-32 5080022 YP_001183667.1 CDS Sputcn32_2147 NC_009438.1 2463967 2464290 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: shm:Shewmr7_1821 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(2463967..2464290) Shewanella putrefaciens CN-32 5080023 YP_001183668.1 CDS Sputcn32_2148 NC_009438.1 2464305 2464688 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: shm:Shewmr7_1820 FeS cluster assembly scaffold IscU; scaffold protein complement(2464305..2464688) Shewanella putrefaciens CN-32 5080024 YP_001183669.1 CDS Sputcn32_2149 NC_009438.1 2464727 2465941 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2464727..2465941) Shewanella putrefaciens CN-32 5080025 YP_001183670.1 CDS Sputcn32_2150 NC_009438.1 2466018 2466479 R TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator complement(2466018..2466479) Shewanella putrefaciens CN-32 5080026 YP_001183671.1 CDS Sputcn32_2151 NC_009438.1 2466829 2467650 R TIGRFAM: serine O-acetyltransferase; KEGG: shm:Shewmr7_1817 serine O-acetyltransferase; serine O-acetyltransferase complement(2466829..2467650) Shewanella putrefaciens CN-32 5080027 YP_001183672.1 CDS Sputcn32_2152 NC_009438.1 2467692 2468417 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase complement(2467692..2468417) Shewanella putrefaciens CN-32 5080028 YP_001183673.1 CDS Sputcn32_2153 NC_009438.1 2468571 2469374 D PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_1815 inositol-phosphate phosphatase; inositol-phosphate phosphatase 2468571..2469374 Shewanella putrefaciens CN-32 5080029 YP_001183674.1 CDS Sputcn32_2154 NC_009438.1 2469478 2470728 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: she:Shewmr4_1734 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(2469478..2470728) Shewanella putrefaciens CN-32 5080030 YP_001183675.1 CDS Sputcn32_2155 NC_009438.1 2470725 2471420 R KEGG: shm:Shewmr7_1813 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2470725..2471420) Shewanella putrefaciens CN-32 5080031 YP_001183676.1 CDS Sputcn32_2156 NC_009438.1 2471502 2472734 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: shm:Shewmr7_1812 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(2471502..2472734) Shewanella putrefaciens CN-32 5080032 YP_001183677.1 CDS Sputcn32_2157 NC_009438.1 2472829 2473434 D KEGG: son:SO2256 hypothetical protein; hypothetical protein 2472829..2473434 Shewanella putrefaciens CN-32 5080033 YP_001183678.1 CDS Sputcn32_2158 NC_009438.1 2473522 2477010 D KEGG: shm:Shewmr7_1810 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 2473522..2477010 Shewanella putrefaciens CN-32 5080034 YP_001183679.1 CDS Sputcn32_2159 NC_009438.1 2477010 2478020 D KEGG: son:SO2254 hypothetical protein; hypothetical protein 2477010..2478020 Shewanella putrefaciens CN-32 5080035 YP_001183680.1 CDS Sputcn32_2160 NC_009438.1 2478106 2478381 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(2478106..2478381) Shewanella putrefaciens CN-32 5080036 YP_001183681.1 CDS Sputcn32_2161 NC_009438.1 2479016 2480716 R KEGG: son:SO1425 hypothetical protein; hypothetical protein complement(2479016..2480716) Shewanella putrefaciens CN-32 5080037 YP_001183682.1 CDS Sputcn32_2162 NC_009438.1 2480726 2483002 R KEGG: son:SO1424 hypothetical protein; hypothetical protein complement(2480726..2483002) Shewanella putrefaciens CN-32 5080038 YP_001183683.1 CDS Sputcn32_2163 NC_009438.1 2483291 2483452 R KEGG: son:SO2209 hypothetical protein; hypothetical protein complement(2483291..2483452) Shewanella putrefaciens CN-32 5080039 YP_001183684.1 CDS Sputcn32_2164 NC_009438.1 2483589 2484185 D PFAM: phage integrase family protein; KEGG: shm:Shewmr7_3899 phage integrase family protein; phage integrase family protein 2483589..2484185 Shewanella putrefaciens CN-32 5080040 YP_001183685.1 CDS Sputcn32_2165 NC_009438.1 2484404 2491750 D TIGRFAM: YD repeat protein; PFAM: Fibronectin, type III domain protein; YD repeat-containing protein; FG-GAP repeat protein; KEGG: shm:Shewmr7_1124 YD repeat protein; YD repeat-containing protein 2484404..2491750 Shewanella putrefaciens CN-32 5080041 YP_001183686.1 CDS Sputcn32_2166 NC_009438.1 2491753 2492133 D hypothetical protein 2491753..2492133 Shewanella putrefaciens CN-32 5080042 YP_001183687.1 CDS Sputcn32_2167 NC_009438.1 2492217 2494085 D TIGRFAM: YD repeat protein; KEGG: shm:Shewmr7_1180 YD repeat protein; YD repeat-containing protein 2492217..2494085 Shewanella putrefaciens CN-32 5080043 YP_001183688.1 CDS Sputcn32_2168 NC_009438.1 2494063 2494596 D hypothetical protein 2494063..2494596 Shewanella putrefaciens CN-32 5080044 YP_001183689.1 CDS Sputcn32_2169 NC_009438.1 2495738 2496295 R PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein complement(2495738..2496295) Shewanella putrefaciens CN-32 5080045 YP_001183690.1 CDS Sputcn32_2170 NC_009438.1 2496353 2497381 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(2496353..2497381) Shewanella putrefaciens CN-32 5080046 YP_001183691.1 CDS Sputcn32_2171 NC_009438.1 2497771 2499147 D KEGG: shm:Shewmr7_1804 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 2497771..2499147 Shewanella putrefaciens CN-32 5080047 YP_001183692.1 CDS Sputcn32_2172 NC_009438.1 2499284 2500009 R KEGG: son:SO2247 hypothetical protein; hypothetical protein complement(2499284..2500009) Shewanella putrefaciens CN-32 5080048 YP_001183693.1 CDS Sputcn32_2173 NC_009438.1 2500211 2501053 R PFAM: putative esterase; KEGG: shm:Shewmr7_2190 carboxylesterase; carboxylesterase complement(2500211..2501053) Shewanella putrefaciens CN-32 5080049 YP_001183694.1 CDS Sputcn32_2174 NC_009438.1 2501193 2502332 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_2191 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(2501193..2502332) Shewanella putrefaciens CN-32 5080050 YP_001183695.1 CDS Sputcn32_2175 NC_009438.1 2502508 2503386 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2192 transcriptional regulator, LysR family; LysR family transcriptional regulator 2502508..2503386 Shewanella putrefaciens CN-32 5080051 YP_001183696.1 CDS Sputcn32_2176 NC_009438.1 2503439 2504728 R PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_2193 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2503439..2504728) Shewanella putrefaciens CN-32 5080052 YP_001183697.1 CDS Sputcn32_2177 NC_009438.1 2505233 2505868 D PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein 2505233..2505868 Shewanella putrefaciens CN-32 5080053 YP_001183698.1 CDS hisG NC_009438.1 2506275 2507270 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2506275..2507270 Shewanella putrefaciens CN-32 5080054 YP_001183699.1 CDS hisD NC_009438.1 2507274 2508575 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2507274..2508575 Shewanella putrefaciens CN-32 5080055 YP_001183700.1 CDS Sputcn32_2180 NC_009438.1 2508666 2509787 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2508666..2509787 Shewanella putrefaciens CN-32 5080056 YP_001183701.1 CDS Sputcn32_2181 NC_009438.1 2509817 2510908 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2509817..2510908 Shewanella putrefaciens CN-32 5080303 YP_001183702.1 CDS hisH NC_009438.1 2510940 2511767 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2510940..2511767 Shewanella putrefaciens CN-32 5080304 YP_001183703.1 CDS Sputcn32_2183 NC_009438.1 2511838 2512575 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2511838..2512575 Shewanella putrefaciens CN-32 5080305 YP_001183704.1 CDS Sputcn32_2184 NC_009438.1 2512557 2513330 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2512557..2513330 Shewanella putrefaciens CN-32 5080306 YP_001183705.1 CDS Sputcn32_2185 NC_009438.1 2513469 2514110 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2513469..2514110 Shewanella putrefaciens CN-32 5080307 YP_001183706.1 CDS Sputcn32_2186 NC_009438.1 2514628 2515815 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: she:Shewmr4_1792 aromatic amino acid transporter; aromatic amino acid transporter 2514628..2515815 Shewanella putrefaciens CN-32 5080308 YP_001183707.1 CDS Sputcn32_2187 NC_009438.1 2516119 2519445 D KEGG: she:Shewmr4_1791 hypothetical protein; hypothetical protein 2516119..2519445 Shewanella putrefaciens CN-32 5080309 YP_001183708.1 CDS Sputcn32_2188 NC_009438.1 2519459 2519677 D KEGG: son:SO2063 hypothetical protein; hypothetical protein 2519459..2519677 Shewanella putrefaciens CN-32 5080310 YP_001183709.1 CDS Sputcn32_2189 NC_009438.1 2519703 2520068 D PFAM: Uncharacterized conserved protein UCP025560; KEGG: shm:Shewmr7_2188 uncharacterized conserved protein UCP025560; hypothetical protein 2519703..2520068 Shewanella putrefaciens CN-32 5080311 YP_001183710.1 CDS Sputcn32_2190 NC_009438.1 2520384 2520896 R hypothetical protein complement(2520384..2520896) Shewanella putrefaciens CN-32 5080312 YP_001183711.1 CDS Sputcn32_2191 NC_009438.1 2520969 2521298 R hypothetical protein complement(2520969..2521298) Shewanella putrefaciens CN-32 5080313 YP_001183712.1 CDS Sputcn32_2192 NC_009438.1 2521482 2521574 D KEGG: vpa:VP1842 RelB protein; RelB protein 2521482..2521574 Shewanella putrefaciens CN-32 5080314 YP_001183713.1 CDS Sputcn32_2193 NC_009438.1 2521646 2522179 R PFAM: protein of unknown function DUF1379; KEGG: she:Shewmr4_1682 protein of unknown function DUF1379; hypothetical protein complement(2521646..2522179) Shewanella putrefaciens CN-32 5080315 YP_001183714.1 CDS Sputcn32_2194 NC_009438.1 2522380 2523399 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2522380..2523399) Shewanella putrefaciens CN-32 5080316 YP_001183715.1 CDS Sputcn32_2195 NC_009438.1 2523462 2528306 R PFAM: NAD-glutamate dehydrogenase; KEGG: shm:Shewmr7_1755 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(2523462..2528306) Shewanella putrefaciens CN-32 5080317 YP_001183716.1 CDS Sputcn32_2196 NC_009438.1 2528571 2530886 R KEGG: shm:Shewmr7_1754 hypothetical protein; hypothetical protein complement(2528571..2530886) Shewanella putrefaciens CN-32 5080318 YP_001183717.1 CDS Sputcn32_2197 NC_009438.1 2530919 2531932 R KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein complement(2530919..2531932) Shewanella putrefaciens CN-32 5080319 YP_001183718.1 CDS Sputcn32_2198 NC_009438.1 2531986 2533350 R PFAM: protein of unknown function DUF1329; KEGG: she:Shewmr4_1677 protein of unknown function DUF1329; hypothetical protein complement(2531986..2533350) Shewanella putrefaciens CN-32 5080320 YP_001183719.1 CDS Sputcn32_2199 NC_009438.1 2533364 2535406 R PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein complement(2533364..2535406) Shewanella putrefaciens CN-32 5080321 YP_001183720.1 CDS Sputcn32_2200 NC_009438.1 2535745 2535978 R KEGG: son:SO2598 hypothetical protein; hypothetical protein complement(2535745..2535978) Shewanella putrefaciens CN-32 5080322 YP_001183721.1 CDS pepN NC_009438.1 2536006 2538555 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_1749 aminopeptidase N; aminopeptidase N complement(2536006..2538555) Shewanella putrefaciens CN-32 5080323 YP_001183722.1 CDS Sputcn32_2202 NC_009438.1 2538638 2540683 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(2538638..2540683) Shewanella putrefaciens CN-32 5080324 YP_001183723.1 CDS Sputcn32_2203 NC_009438.1 2540712 2541353 R affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector complement(2540712..2541353) Shewanella putrefaciens CN-32 5080325 YP_001183724.1 CDS Sputcn32_2204 NC_009438.1 2541633 2542091 R PFAM: GAF domain protein; KEGG: shm:Shewmr7_1746 putative GAF sensor protein; putative GAF sensor protein complement(2541633..2542091) Shewanella putrefaciens CN-32 5080326 YP_001183725.1 CDS Sputcn32_2205 NC_009438.1 2542110 2542409 R PFAM: YebG family protein; KEGG: shm:Shewmr7_1745 YebG family protein; hypothetical protein complement(2542110..2542409) Shewanella putrefaciens CN-32 5080327 YP_001183726.1 CDS Sputcn32_2206 NC_009438.1 2542617 2543249 D PFAM: Paraquat-inducible protein A; KEGG: she:Shewmr4_1669 paraquat-inducible protein A; paraquat-inducible protein A 2542617..2543249 Shewanella putrefaciens CN-32 5080328 YP_001183727.1 CDS Sputcn32_2207 NC_009438.1 2543236 2543868 D PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_1743 paraquat-inducible protein A; paraquat-inducible protein A 2543236..2543868 Shewanella putrefaciens CN-32 5080329 YP_001183728.1 CDS Sputcn32_2208 NC_009438.1 2543855 2546500 D PFAM: Mammalian cell entry related domain protein; KEGG: she:Shewmr4_1667 mammalian cell entry related domain protein; hypothetical protein 2543855..2546500 Shewanella putrefaciens CN-32 5080330 YP_001183729.1 CDS Sputcn32_2209 NC_009438.1 2546597 2547823 R PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1666 nucleoside recognition domain protein; nucleoside recognition domain-containing protein complement(2546597..2547823) Shewanella putrefaciens CN-32 5080331 YP_001183730.1 CDS yebU NC_009438.1 2547988 2549505 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2547988..2549505 Shewanella putrefaciens CN-32 5080332 YP_001183731.1 CDS Sputcn32_2211 NC_009438.1 2549812 2550654 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_1739 hydrolase, TatD family; TatD family hydrolase complement(2549812..2550654) Shewanella putrefaciens CN-32 5080333 YP_001183732.1 CDS Sputcn32_2212 NC_009438.1 2550700 2551026 R KEGG: shm:Shewmr7_1738 type IV pilus biogenesis protein PilZ; type IV pilus biogenesis protein PilZ complement(2550700..2551026) Shewanella putrefaciens CN-32 5080334 YP_001183733.1 CDS Sputcn32_2213 NC_009438.1 2551033 2551989 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: she:Shewmr4_1662 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' complement(2551033..2551989) Shewanella putrefaciens CN-32 5080335 YP_001183734.1 CDS tmk NC_009438.1 2551983 2552609 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2551983..2552609) Shewanella putrefaciens CN-32 5080336 YP_001183735.1 CDS Sputcn32_2215 NC_009438.1 2552632 2553669 R PFAM: aminodeoxychorismate lyase; KEGG: shm:Shewmr7_1735 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(2552632..2553669) Shewanella putrefaciens CN-32 5080337 YP_001183736.1 CDS Sputcn32_2216 NC_009438.1 2553666 2554475 R PFAM: aminotransferase, class IV; KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminotransferase, class IV complement(2553666..2554475) Shewanella putrefaciens CN-32 5080338 YP_001183737.1 CDS dcd NC_009438.1 2554481 2555062 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2554481..2555062) Shewanella putrefaciens CN-32 5080339 YP_001183738.1 CDS Sputcn32_2218 NC_009438.1 2555094 2555732 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2555094..2555732) Shewanella putrefaciens CN-32 5080340 YP_001183739.1 CDS Sputcn32_2219 NC_009438.1 2555744 2556865 R KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein complement(2555744..2556865) Shewanella putrefaciens CN-32 5080341 YP_001183740.1 CDS metG NC_009438.1 2557020 2559089 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2557020..2559089 Shewanella putrefaciens CN-32 5080342 YP_001183741.1 CDS Sputcn32_2221 NC_009438.1 2559179 2560135 D PFAM: Auxin Efflux Carrier; KEGG: she:Shewmr4_1654 auxin efflux carrier; auxin efflux carrier 2559179..2560135 Shewanella putrefaciens CN-32 5080343 YP_001183742.1 CDS Sputcn32_2222 NC_009438.1 2560197 2560949 R PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein complement(2560197..2560949) Shewanella putrefaciens CN-32 5080344 YP_001183743.1 CDS Sputcn32_2223 NC_009438.1 2560993 2561463 R PFAM: 17 kDa surface antigen; KEGG: she:Shewmr4_1652 17 kDa surface antigen; 17 kDa surface antigen complement(2560993..2561463) Shewanella putrefaciens CN-32 5080345 YP_001183744.1 CDS aat NC_009438.1 2561518 2562228 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2561518..2562228 Shewanella putrefaciens CN-32 5080346 YP_001183745.1 CDS Sputcn32_2225 NC_009438.1 2562218 2562925 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2562218..2562925 Shewanella putrefaciens CN-32 5080347 YP_001183746.1 CDS infA NC_009438.1 2563017 2563235 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2563017..2563235 Shewanella putrefaciens CN-32 5080348 YP_001183747.1 CDS Sputcn32_2227 NC_009438.1 2563351 2565618 R KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(2563351..2565618) Shewanella putrefaciens CN-32 5080349 YP_001183748.1 CDS clpS NC_009438.1 2565662 2565970 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2565662..2565970) Shewanella putrefaciens CN-32 5080350 YP_001183749.1 CDS Sputcn32_2229 NC_009438.1 2566164 2566370 D KEGG: shm:Shewmr7_1721 cold-shock DNA-binding domain protein; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2566164..2566370 Shewanella putrefaciens CN-32 5080351 YP_001183750.1 CDS Sputcn32_2230 NC_009438.1 2566691 2568916 R KEGG: shm:Shewmr7_1681 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(2566691..2568916) Shewanella putrefaciens CN-32 5080352 YP_001183751.1 CDS Sputcn32_2231 NC_009438.1 2569233 2570045 D PFAM: pseudouridine synthase; KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridylate synthase 2569233..2570045 Shewanella putrefaciens CN-32 5080203 YP_001183752.1 CDS Sputcn32_2232 NC_009438.1 2570113 2570607 D PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase 2570113..2570607 Shewanella putrefaciens CN-32 5080204 YP_001183753.1 CDS mnmA NC_009438.1 2570820 2571938 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2570820..2571938 Shewanella putrefaciens CN-32 5080205 YP_001183754.1 CDS Sputcn32_2234 NC_009438.1 2571942 2572559 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2571942..2572559 Shewanella putrefaciens CN-32 5080206 YP_001183755.1 CDS Sputcn32_2235 NC_009438.1 2572589 2573959 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2572589..2573959 Shewanella putrefaciens CN-32 5080207 YP_001183756.1 CDS Sputcn32_2236 NC_009438.1 2574112 2575251 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: she:Shewmr4_1600 cupin 4 family protein; cupin 4 family protein 2574112..2575251 Shewanella putrefaciens CN-32 5080208 YP_001183757.1 CDS Sputcn32_2237 NC_009438.1 2575430 2575879 R KEGG: son:SO2637 hypothetical protein; hypothetical protein complement(2575430..2575879) Shewanella putrefaciens CN-32 5080209 YP_001183758.1 CDS Sputcn32_2238 NC_009438.1 2576160 2577194 D PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: she:Shewmr4_1598 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 2576160..2577194 Shewanella putrefaciens CN-32 5080210 YP_001183759.1 CDS Sputcn32_2239 NC_009438.1 2577386 2577730 D KEGG: shm:Shewmr7_1672 hypothetical protein; hypothetical protein 2577386..2577730 Shewanella putrefaciens CN-32 5080211 YP_001183760.1 CDS Sputcn32_2240 NC_009438.1 2577867 2578340 R PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2577867..2578340) Shewanella putrefaciens CN-32 5080212 YP_001183761.1 CDS Sputcn32_2241 NC_009438.1 2578428 2578901 R PFAM: protein of unknown function DUF1285; KEGG: son:SO2642 hypothetical protein; hypothetical protein complement(2578428..2578901) Shewanella putrefaciens CN-32 5080213 YP_001183762.1 CDS Sputcn32_2242 NC_009438.1 2579023 2582064 R PFAM: FAD linked oxidase domain protein; KEGG: she:Shewmr4_1593 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(2579023..2582064) Shewanella putrefaciens CN-32 5080214 YP_001183763.1 CDS Sputcn32_2243 NC_009438.1 2582162 2584531 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(2582162..2584531) Shewanella putrefaciens CN-32 5080215 YP_001183764.1 CDS Sputcn32_2244 NC_009438.1 2584656 2585468 D PFAM: protein of unknown function DUF299; KEGG: shm:Shewmr7_1666 protein of unknown function DUF299; hypothetical protein 2584656..2585468 Shewanella putrefaciens CN-32 5080216 YP_001183765.1 CDS Sputcn32_2245 NC_009438.1 2585651 2586724 D tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 2585651..2586724 Shewanella putrefaciens CN-32 5080217 YP_001183766.1 CDS Sputcn32_2246 NC_009438.1 2586879 2587310 D PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1664 thioesterase superfamily protein; thioesterase superfamily protein 2586879..2587310 Shewanella putrefaciens CN-32 5080218 YP_001183767.1 CDS Sputcn32_2247 NC_009438.1 2587532 2588194 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: she:Shewmr4_1588 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2587532..2588194 Shewanella putrefaciens CN-32 5080219 YP_001183768.1 CDS cysB NC_009438.1 2588277 2589254 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(2588277..2589254) Shewanella putrefaciens CN-32 5080220 YP_001183769.1 CDS Sputcn32_2249 NC_009438.1 2589483 2590262 D KEGG: she:Shewmr4_1586 hypothetical protein; hypothetical protein 2589483..2590262 Shewanella putrefaciens CN-32 5080221 YP_001183770.1 CDS Sputcn32_2250 NC_009438.1 2590448 2593090 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2590448..2593090) Shewanella putrefaciens CN-32 5080222 YP_001183771.1 CDS Sputcn32_2251 NC_009438.1 2593419 2594753 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2593419..2594753 Shewanella putrefaciens CN-32 5080223 YP_001183772.1 CDS Sputcn32_2252 NC_009438.1 2594815 2597370 R PFAM: Ig domain protein, group 1 domain protein; KEGG: sdn:Sden_2330 Ig-like, group 1; Ig domain-containing protein complement(2594815..2597370) Shewanella putrefaciens CN-32 5080224 YP_001183773.1 CDS Sputcn32_2253 NC_009438.1 2597587 2598912 D PFAM: sodium:dicarboxylate symporter; KEGG: she:Shewmr4_1582 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2597587..2598912 Shewanella putrefaciens CN-32 5080225 YP_001183774.1 CDS Sputcn32_2254 NC_009438.1 2599080 2599439 D KEGG: she:Shewmr4_1581 hypothetical protein; hypothetical protein 2599080..2599439 Shewanella putrefaciens CN-32 5080226 YP_001183775.1 CDS Sputcn32_2255 NC_009438.1 2599610 2600284 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_1655 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2599610..2600284 Shewanella putrefaciens CN-32 5080227 YP_001183776.1 CDS Sputcn32_2256 NC_009438.1 2600275 2601624 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase 2600275..2601624 Shewanella putrefaciens CN-32 5080228 YP_001183777.1 CDS Sputcn32_2257 NC_009438.1 2601641 2602336 R SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; prolyl 4-hydroxylase subunit alpha complement(2601641..2602336) Shewanella putrefaciens CN-32 5080229 YP_001183778.1 CDS Sputcn32_2258 NC_009438.1 2602452 2603714 D KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 2602452..2603714 Shewanella putrefaciens CN-32 5080230 YP_001183779.1 CDS Sputcn32_2259 NC_009438.1 2603774 2604721 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: shm:Shewmr7_1720 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(2603774..2604721) Shewanella putrefaciens CN-32 5080231 YP_001183780.1 CDS Sputcn32_2260 NC_009438.1 2604848 2605249 R KEGG: son:SO1940 hypothetical protein; hypothetical protein complement(2604848..2605249) Shewanella putrefaciens CN-32 5080232 YP_001183781.1 CDS Sputcn32_2261 NC_009438.1 2605367 2605816 R KEGG: she:Shewmr4_1643 hypothetical protein; hypothetical protein complement(2605367..2605816) Shewanella putrefaciens CN-32 5080233 YP_001183782.1 CDS Sputcn32_2262 NC_009438.1 2605813 2606547 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2605813..2606547) Shewanella putrefaciens CN-32 5080234 YP_001183783.1 CDS fur NC_009438.1 2606804 2607235 D negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 2606804..2607235 Shewanella putrefaciens CN-32 5080235 YP_001183784.1 CDS Sputcn32_2264 NC_009438.1 2607331 2607828 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2607331..2607828) Shewanella putrefaciens CN-32 5080236 YP_001183785.1 CDS Sputcn32_2265 NC_009438.1 2607894 2608301 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shm:Shewmr7_1714 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(2607894..2608301) Shewanella putrefaciens CN-32 5080237 YP_001183786.1 CDS Sputcn32_2266 NC_009438.1 2608703 2609575 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha complement(2608703..2609575) Shewanella putrefaciens CN-32 5080238 YP_001183787.1 CDS sucC NC_009438.1 2609575 2610741 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2609575..2610741) Shewanella putrefaciens CN-32 5080239 YP_001183788.1 CDS Sputcn32_2268 NC_009438.1 2610819 2612021 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: she:Shewmr4_1636 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(2610819..2612021) Shewanella putrefaciens CN-32 5080240 YP_001183789.1 CDS sucA NC_009438.1 2612053 2614872 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(2612053..2614872) Shewanella putrefaciens CN-32 5080241 YP_001183790.1 CDS sdhB NC_009438.1 2615088 2615795 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(2615088..2615795) Shewanella putrefaciens CN-32 5080242 YP_001183791.1 CDS sdhA NC_009438.1 2615807 2617573 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2615807..2617573) Shewanella putrefaciens CN-32 5080243 YP_001183792.1 CDS Sputcn32_2272 NC_009438.1 2617574 2617921 R KEGG: she:Shewmr4_1632 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; putative succinate dehydrogenase, hydrophobic subunit complement(2617574..2617921) Shewanella putrefaciens CN-32 5080244 YP_001183793.1 CDS Sputcn32_2273 NC_009438.1 2617915 2618310 R PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: shm:Shewmr7_1706 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome subunit B complement(2617915..2618310) Shewanella putrefaciens CN-32 5080245 YP_001183794.1 CDS gltA NC_009438.1 2618727 2620013 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2618727..2620013 Shewanella putrefaciens CN-32 5080246 YP_001183795.1 CDS Sputcn32_2275 NC_009438.1 2620337 2621401 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit 2620337..2621401 Shewanella putrefaciens CN-32 5080247 YP_001183796.1 CDS Sputcn32_2276 NC_009438.1 2621415 2624666 D PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1628 acriflavin resistance protein; acriflavin resistance protein 2621415..2624666 Shewanella putrefaciens CN-32 5080248 YP_001183797.1 CDS Sputcn32_2277 NC_009438.1 2624663 2627710 D PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1627 acriflavin resistance protein; acriflavin resistance protein 2624663..2627710 Shewanella putrefaciens CN-32 5080249 YP_001183798.1 CDS Sputcn32_2278 NC_009438.1 2627791 2628102 R PFAM: Uncharacterized conserved protein UCP029143; KEGG: she:Shewmr4_1625 uncharacterized conserved protein UCP029143; hypothetical protein complement(2627791..2628102) Shewanella putrefaciens CN-32 5080250 YP_001183799.1 CDS Sputcn32_2279 NC_009438.1 2628423 2628620 D KEGG: son:SO1921 hypothetical protein; hypothetical protein 2628423..2628620 Shewanella putrefaciens CN-32 5080251 YP_001183800.1 CDS Sputcn32_2280 NC_009438.1 2628715 2630310 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: she:Shewmr4_1623 MATE efflux family protein; MATE efflux family protein complement(2628715..2630310) Shewanella putrefaciens CN-32 5080252 YP_001183801.1 CDS Sputcn32_2281 NC_009438.1 2630353 2631222 R PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: she:Shewmr4_2209 ion transport protein; Ion transport protein complement(2630353..2631222) Shewanella putrefaciens CN-32 5080253 YP_001183802.1 CDS Sputcn32_2282 NC_009438.1 2631396 2631911 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: shm:Shewmr7_2287 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2631396..2631911 Shewanella putrefaciens CN-32 5080254 YP_001183803.1 CDS Sputcn32_2283 NC_009438.1 2632083 2632748 D PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein 2632083..2632748 Shewanella putrefaciens CN-32 5080255 YP_001183804.1 CDS Sputcn32_2284 NC_009438.1 2632826 2633086 D KEGG: shm:Shewmr7_2289 hypothetical protein; hypothetical protein 2632826..2633086 Shewanella putrefaciens CN-32 5080256 YP_001183805.1 CDS Sputcn32_2285 NC_009438.1 2633194 2634135 R PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B complement(2633194..2634135) Shewanella putrefaciens CN-32 5080257 YP_001183806.1 CDS Sputcn32_2286 NC_009438.1 2634193 2635074 R KEGG: shm:Shewmr7_2291 hypothetical protein; hypothetical protein complement(2634193..2635074) Shewanella putrefaciens CN-32 5080258 YP_001183807.1 CDS Sputcn32_2287 NC_009438.1 2635575 2636576 D PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase; cytochrome-c peroxidase 2635575..2636576 Shewanella putrefaciens CN-32 5080259 YP_001183808.1 CDS Sputcn32_2288 NC_009438.1 2636666 2637694 R PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA complement(2636666..2637694) Shewanella putrefaciens CN-32 5080260 YP_001183809.2 CDS Sputcn32_2289 NC_009438.1 2637772 2637990 D PFAM: protein of unknown function DUF1414; KEGG: shm:Shewmr7_2294 protein of unknown function DUF1414; hypothetical protein 2637772..2637990 Shewanella putrefaciens CN-32 5080261 YP_001183810.1 CDS Sputcn32_2290 NC_009438.1 2638054 2639832 D PFAM: sulfatase; KEGG: she:Shewmr4_2219 sulfatase; sulfatase 2638054..2639832 Shewanella putrefaciens CN-32 5080262 YP_001183811.1 CDS Sputcn32_2291 NC_009438.1 2639917 2641023 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: shm:Shewmr7_2296 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(2639917..2641023) Shewanella putrefaciens CN-32 5080263 YP_001183812.1 CDS Sputcn32_2292 NC_009438.1 2641136 2642002 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2297 transcriptional regulator, LysR family; LysR family transcriptional regulator 2641136..2642002 Shewanella putrefaciens CN-32 5080264 YP_001183813.1 CDS Sputcn32_2293 NC_009438.1 2642563 2643054 D KEGG: shm:Shewmr7_2317 hypothetical protein; hypothetical protein 2642563..2643054 Shewanella putrefaciens CN-32 5080266 YP_001183814.1 CDS nadE NC_009438.1 2643132 2643962 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2643132..2643962) Shewanella putrefaciens CN-32 5080267 YP_001183815.1 CDS Sputcn32_2295 NC_009438.1 2644169 2645473 R PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine kinase complement(2644169..2645473) Shewanella putrefaciens CN-32 5080268 YP_001183816.1 CDS hemH NC_009438.1 2645718 2646761 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(2645718..2646761) Shewanella putrefaciens CN-32 5080269 YP_001183817.1 CDS adk NC_009438.1 2646842 2647486 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2646842..2647486) Shewanella putrefaciens CN-32 5080270 YP_001183818.1 CDS Sputcn32_2298 NC_009438.1 2647628 2648491 R PFAM: Thioredoxin domain; KEGG: she:Shewmr4_2250 thioredoxin domain; thioredoxin domain-containing protein complement(2647628..2648491) Shewanella putrefaciens CN-32 5080271 YP_001183819.1 CDS Sputcn32_2299 NC_009438.1 2648736 2650649 R molecular chaperone; heat shock protein 90 complement(2648736..2650649) Shewanella putrefaciens CN-32 5080272 YP_001183820.1 CDS recR NC_009438.1 2650935 2651534 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(2650935..2651534) Shewanella putrefaciens CN-32 5080273 YP_001183821.1 CDS Sputcn32_2301 NC_009438.1 2651547 2651876 R PFAM: conserved hypothetical protein 103; KEGG: she:Shewmr4_2253 conserved hypothetical protein 103; hypothetical protein complement(2651547..2651876) Shewanella putrefaciens CN-32 5080274 YP_001183822.1 CDS Sputcn32_2302 NC_009438.1 2652046 2654919 R KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(2652046..2654919) Shewanella putrefaciens CN-32 5080275 YP_001183823.1 CDS Sputcn32_2303 NC_009438.1 2655038 2655592 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2655038..2655592) Shewanella putrefaciens CN-32 5080276 YP_001183824.1 CDS Sputcn32_2304 NC_009438.1 2655822 2656187 R PFAM: protein of unknown function DUF454; KEGG: she:Shewmr4_2256 protein of unknown function DUF454; hypothetical protein complement(2655822..2656187) Shewanella putrefaciens CN-32 5080277 YP_001183825.1 CDS Sputcn32_2305 NC_009438.1 2656269 2656391 R KEGG: shm:Shewmr7_2329 hypothetical protein; hypothetical protein complement(2656269..2656391) Shewanella putrefaciens CN-32 5080278 YP_001183826.1 CDS Sputcn32_2306 NC_009438.1 2656540 2657286 R KEGG: she:Shewmr4_2258 hypothetical protein; hypothetical protein complement(2656540..2657286) Shewanella putrefaciens CN-32 5080279 YP_001183827.1 CDS Sputcn32_2307 NC_009438.1 2657286 2658188 R PFAM: protein of unknown function DUF692; KEGG: son:SO2008 hypothetical protein; hypothetical protein complement(2657286..2658188) Shewanella putrefaciens CN-32 5080280 YP_001183828.1 CDS Sputcn32_2308 NC_009438.1 2658268 2658678 R KEGG: shm:Shewmr7_2332 hypothetical protein; hypothetical protein complement(2658268..2658678) Shewanella putrefaciens CN-32 5080281 YP_001183829.1 CDS Sputcn32_2309 NC_009438.1 2658923 2659876 D PFAM: dihydrouridine synthase, DuS; KEGG: shm:Shewmr7_2333 dihydrouridine synthase, DuS; dihydrouridine synthase, DuS 2658923..2659876 Shewanella putrefaciens CN-32 5080282 YP_001183830.1 CDS Sputcn32_2310 NC_009438.1 2660080 2660439 D KEGG: shm:Shewmr7_2334 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 2660080..2660439 Shewanella putrefaciens CN-32 5080283 YP_001183831.1 CDS ushA NC_009438.1 2660672 2662390 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2660672..2662390) Shewanella putrefaciens CN-32 5080284 YP_001183832.1 CDS Sputcn32_2312 NC_009438.1 2662755 2663426 R PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; carboxylesterase complement(2662755..2663426) Shewanella putrefaciens CN-32 5080285 YP_001183833.1 CDS Sputcn32_2313 NC_009438.1 2663515 2663742 R KEGG: shm:Shewmr7_2338 hypothetical protein; hypothetical protein complement(2663515..2663742) Shewanella putrefaciens CN-32 5080286 YP_001183834.1 CDS Sputcn32_2314 NC_009438.1 2663994 2665952 D PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_2339 peptidase M1, membrane alanine aminopeptidase; peptidase M1, membrane alanine aminopeptidase 2663994..2665952 Shewanella putrefaciens CN-32 5080287 YP_001183835.1 CDS Sputcn32_2315 NC_009438.1 2666072 2666563 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type complement(2666072..2666563) Shewanella putrefaciens CN-32 5080288 YP_001183836.1 CDS Sputcn32_2316 NC_009438.1 2666670 2667989 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: she:Shewmr4_2269 lytic murein transglycosylase; lytic murein transglycosylase complement(2666670..2667989) Shewanella putrefaciens CN-32 5080289 YP_001183837.1 CDS Sputcn32_2317 NC_009438.1 2668196 2668555 D KEGG: shm:Shewmr7_2342 hypothetical protein; hypothetical protein 2668196..2668555 Shewanella putrefaciens CN-32 5080290 YP_001183838.1 CDS Sputcn32_2318 NC_009438.1 2668607 2669245 D KEGG: shm:Shewmr7_2343 hypothetical protein; hypothetical protein 2668607..2669245 Shewanella putrefaciens CN-32 5080291 YP_001183839.1 CDS Sputcn32_2319 NC_009438.1 2669340 2670284 R PFAM: response regulator receiver; CheW domain protein; KEGG: she:Shewmr4_2272 response regulator receiver modulated CheW protein; putative CheW protein complement(2669340..2670284) Shewanella putrefaciens CN-32 5080292 YP_001183840.1 CDS Sputcn32_2320 NC_009438.1 2670548 2671165 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase; type 11 methyltransferase complement(2670548..2671165) Shewanella putrefaciens CN-32 5080293 YP_001183841.1 CDS Sputcn32_2321 NC_009438.1 2671262 2671813 D PFAM: peptidase S16, lon domain protein; KEGG: shm:Shewmr7_2346 peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 2671262..2671813 Shewanella putrefaciens CN-32 5080294 YP_001183842.1 CDS Sputcn32_2322 NC_009438.1 2671948 2672610 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2671948..2672610 Shewanella putrefaciens CN-32 5080295 YP_001183843.1 CDS Sputcn32_2323 NC_009438.1 2672603 2673310 D TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: she:Shewmr4_2276 anti-ECFsigma factor, ChrR; anti-ECF sigma factor ChrR 2672603..2673310 Shewanella putrefaciens CN-32 5080296 YP_001183844.1 CDS Sputcn32_2324 NC_009438.1 2673919 2674101 D KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein 2673919..2674101 Shewanella putrefaciens CN-32 5080297 YP_001183845.1 CDS Sputcn32_2325 NC_009438.1 2674402 2674662 D KEGG: shm:Shewmr7_2350 hypothetical protein; hypothetical protein 2674402..2674662 Shewanella putrefaciens CN-32 5080298 YP_001183846.1 CDS Sputcn32_2326 NC_009438.1 2674820 2676292 R PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: son:SO1981 hypothetical protein; putative nicotinate phosphoribosyltransferase complement(2674820..2676292) Shewanella putrefaciens CN-32 5080299 YP_001183847.1 CDS Sputcn32_2327 NC_009438.1 2676303 2677190 R KEGG: son:SO1980 phosphoribosyl transferase domain protein; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(2676303..2677190) Shewanella putrefaciens CN-32 5080300 YP_001183848.1 CDS Sputcn32_2328 NC_009438.1 2677546 2678259 R PFAM: NUDIX hydrolase; KEGG: son:SO1979 MutT/nudix family protein; NUDIX hydrolase complement(2677546..2678259) Shewanella putrefaciens CN-32 5080301 YP_001183849.1 CDS Sputcn32_2329 NC_009438.1 2678341 2679369 R KEGG: son:SO1978 hypothetical protein; hypothetical protein complement(2678341..2679369) Shewanella putrefaciens CN-32 5080302 YP_001183850.1 CDS Sputcn32_2330 NC_009438.1 2679637 2680044 D PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 2679637..2680044 Shewanella putrefaciens CN-32 5080353 YP_001183851.1 CDS Sputcn32_2331 NC_009438.1 2680139 2680516 R KEGG: son:SO2890 hypothetical protein; hypothetical protein complement(2680139..2680516) Shewanella putrefaciens CN-32 5080354 YP_001183852.1 CDS Sputcn32_2332 NC_009438.1 2680680 2681315 R PFAM: regulatory protein, LuxR; KEGG: shm:Shewmr7_2386 transcriptional regulator, LuxR family; response regulator receiver protein complement(2680680..2681315) Shewanella putrefaciens CN-32 5080355 YP_001183853.1 CDS Sputcn32_2333 NC_009438.1 2682053 2682403 R KEGG: shm:Shewmr7_2388 cytochrome c3; cytochrome c3 complement(2682053..2682403) Shewanella putrefaciens CN-32 5080356 YP_001183854.1 CDS Sputcn32_2334 NC_009438.1 2682806 2683669 R putative metalloprotease; heat shock protein HtpX complement(2682806..2683669) Shewanella putrefaciens CN-32 5080357 YP_001183855.1 CDS Sputcn32_2335 NC_009438.1 2683959 2684669 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2683959..2684669 Shewanella putrefaciens CN-32 5080358 YP_001183856.1 CDS mdoG NC_009438.1 2685026 2686615 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2685026..2686615 Shewanella putrefaciens CN-32 5080359 YP_001183857.1 CDS Sputcn32_2337 NC_009438.1 2687240 2688208 D KEGG: shm:Shewmr7_2427 hypothetical protein; hypothetical protein 2687240..2688208 Shewanella putrefaciens CN-32 5080360 YP_001183858.1 CDS Sputcn32_2338 NC_009438.1 2688547 2689161 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: mka:MK0066 biopolymer transport protein; MotA/TolQ/ExbB proton channel 2688547..2689161 Shewanella putrefaciens CN-32 5080361 YP_001183859.1 CDS Sputcn32_2339 NC_009438.1 2689158 2689496 D KEGG: mbu:Mbur_2259 hypothetical protein; hypothetical protein 2689158..2689496 Shewanella putrefaciens CN-32 5080362 YP_001183860.1 CDS Sputcn32_2340 NC_009438.1 2689483 2693439 D PFAM: CobN/magnesium chelatase; KEGG: mba:Mbar_A3731 cobalamin biosynthesis protein N; cobaltochelatase 2689483..2693439 Shewanella putrefaciens CN-32 5080363 YP_001183861.1 CDS Sputcn32_2341 NC_009438.1 2693457 2695751 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4029 TonB-dependent receptor; TonB-dependent receptor 2693457..2695751 Shewanella putrefaciens CN-32 5080364 YP_001183862.1 CDS bioD NC_009438.1 2695851 2696594 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2695851..2696594) Shewanella putrefaciens CN-32 5080365 YP_001183863.1 CDS Sputcn32_2343 NC_009438.1 2696634 2697443 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: she:Shewmr4_2357 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(2696634..2697443) Shewanella putrefaciens CN-32 5080366 YP_001183864.1 CDS Sputcn32_2344 NC_009438.1 2697582 2698793 R PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(2697582..2698793) Shewanella putrefaciens CN-32 5080367 YP_001183865.1 CDS Sputcn32_2345 NC_009438.1 2698798 2699850 R KEGG: shm:Shewmr7_2431 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2698798..2699850) Shewanella putrefaciens CN-32 5080368 YP_001183866.1 CDS Sputcn32_2346 NC_009438.1 2699974 2701314 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2699974..2701314 Shewanella putrefaciens CN-32 5080369 YP_001183867.1 CDS Sputcn32_2347 NC_009438.1 2701548 2703149 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: vch:VC1248 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2701548..2703149 Shewanella putrefaciens CN-32 5080370 YP_001183868.1 CDS Sputcn32_2348 NC_009438.1 2703205 2706642 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; integral membrane sensor hybrid histidine kinase complement(2703205..2706642) Shewanella putrefaciens CN-32 5080371 YP_001183869.1 CDS Sputcn32_2349 NC_009438.1 2706818 2708770 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2706818..2708770 Shewanella putrefaciens CN-32 5080372 YP_001183870.1 CDS Sputcn32_2350 NC_009438.1 2708918 2710726 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2435 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 2708918..2710726 Shewanella putrefaciens CN-32 5080373 YP_001183871.1 CDS grxA NC_009438.1 2710787 2711047 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 2710787..2711047 Shewanella putrefaciens CN-32 5080374 YP_001183872.1 CDS Sputcn32_2352 NC_009438.1 2711228 2711326 D KEGG: son:SO3573 hypothetical protein; hypothetical protein 2711228..2711326 Shewanella putrefaciens CN-32 5080375 YP_001183873.1 CDS Sputcn32_2353 NC_009438.1 2717503 2718054 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(2717503..2718054) Shewanella putrefaciens CN-32 5080381 YP_001183874.1 CDS Sputcn32_2354 NC_009438.1 2718359 2719060 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: she:Shewmr4_1521 transcriptional regulator, GntR family; GntR family transcriptional regulator 2718359..2719060 Shewanella putrefaciens CN-32 5080382 YP_001183875.1 CDS Sputcn32_2355 NC_009438.1 2719153 2720217 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase 2719153..2720217 Shewanella putrefaciens CN-32 5080383 YP_001183876.1 CDS Sputcn32_2356 NC_009438.1 2720415 2721086 R PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III; exonuclease complement(2720415..2721086) Shewanella putrefaciens CN-32 5080384 YP_001183877.1 CDS Sputcn32_2357 NC_009438.1 2721102 2722949 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: shm:Shewmr7_1582 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(2721102..2722949) Shewanella putrefaciens CN-32 5080385 YP_001183878.1 CDS Sputcn32_2358 NC_009438.1 2723092 2724828 R PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1581 Na+/solute symporter; Na+/solute symporter complement(2723092..2724828) Shewanella putrefaciens CN-32 5080386 YP_001183879.1 CDS Sputcn32_2359 NC_009438.1 2724840 2725106 R KEGG: son:SO2858 hypothetical protein; hypothetical protein complement(2724840..2725106) Shewanella putrefaciens CN-32 5080387 YP_001183880.1 CDS Sputcn32_2360 NC_009438.1 2725722 2726345 R PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase complement(2725722..2726345) Shewanella putrefaciens CN-32 5080388 YP_001183881.1 CDS Sputcn32_2361 NC_009438.1 2726459 2727319 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: shm:Shewmr7_1578 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2726459..2727319) Shewanella putrefaciens CN-32 5080389 YP_001183882.1 CDS Sputcn32_2362 NC_009438.1 2727376 2728584 R TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: she:Shewmr4_1510 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2727376..2728584) Shewanella putrefaciens CN-32 5080390 YP_001183883.1 CDS Sputcn32_2363 NC_009438.1 2728803 2729300 R KEGG: son:SO2863 hypothetical protein; hypothetical protein complement(2728803..2729300) Shewanella putrefaciens CN-32 5080391 YP_001183884.1 CDS Sputcn32_2364 NC_009438.1 2729465 2731522 R KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; NAD-dependent DNA ligase complement(2729465..2731522) Shewanella putrefaciens CN-32 5080392 YP_001183885.1 CDS Sputcn32_2365 NC_009438.1 2731621 2732649 R TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: she:Shewmr4_1507 cell division protein ZipA; cell division protein ZipA complement(2731621..2732649) Shewanella putrefaciens CN-32 5080393 YP_001183886.1 CDS Sputcn32_2366 NC_009438.1 2732673 2736110 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC complement(2732673..2736110) Shewanella putrefaciens CN-32 5080394 YP_001183887.1 CDS Sputcn32_2367 NC_009438.1 2736308 2737087 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 2736308..2737087 Shewanella putrefaciens CN-32 5080395 YP_001183888.1 CDS Sputcn32_2368 NC_009438.1 2737182 2738303 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2737182..2738303) Shewanella putrefaciens CN-32 5080396 YP_001183889.1 CDS Sputcn32_2369 NC_009438.1 2738300 2739496 R PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein; RDD domain-containing protein complement(2738300..2739496) Shewanella putrefaciens CN-32 5080397 YP_001183890.1 CDS Sputcn32_2370 NC_009438.1 2739748 2740716 D TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase A 2739748..2740716 Shewanella putrefaciens CN-32 5080398 YP_001183891.1 CDS Sputcn32_2371 NC_009438.1 2740915 2741994 D PFAM: O-methyltransferase, family 2; KEGG: shm:Shewmr7_1566 methyltransferase type 12; O-methyltransferase family protein 2740915..2741994 Shewanella putrefaciens CN-32 5080399 YP_001183892.1 CDS Sputcn32_2372 NC_009438.1 2742126 2743130 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 2742126..2743130 Shewanella putrefaciens CN-32 5080450 YP_001183893.1 CDS Sputcn32_2373 NC_009438.1 2743830 2746730 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2471 TonB-dependent receptor; TonB-dependent receptor 2743830..2746730 Shewanella putrefaciens CN-32 5080451 YP_001183894.1 CDS Sputcn32_2374 NC_009438.1 2746853 2748331 R PFAM: C4-dicarboxylate anaerobic carrier; KEGG: shm:Shewmr7_1563 C4-dicarboxylate anaerobic carrier; hypothetical protein complement(2746853..2748331) Shewanella putrefaciens CN-32 5080452 YP_001183895.1 CDS Sputcn32_2375 NC_009438.1 2748762 2749673 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sfr:Sfri_2469 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 2748762..2749673 Shewanella putrefaciens CN-32 5080453 YP_001183896.1 CDS Sputcn32_2376 NC_009438.1 2749753 2751366 R PFAM: formate/nitrite transporter; CBS domain containing protein; KEGG: sfr:Sfri_2470 formate/nitrite transporter; formate/nitrite transporter complement(2749753..2751366) Shewanella putrefaciens CN-32 5080454 YP_001183897.1 CDS Sputcn32_2377 NC_009438.1 2752283 2753815 D KEGG: sfr:Sfri_2472 hypothetical protein; hypothetical protein 2752283..2753815 Shewanella putrefaciens CN-32 5080455 YP_001183898.1 CDS Sputcn32_2378 NC_009438.1 2754460 2756742 D KEGG: son:SO2912 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; formate acetyltransferase 2754460..2756742 Shewanella putrefaciens CN-32 5080456 YP_001183899.1 CDS pflA NC_009438.1 2756806 2757546 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 2756806..2757546 Shewanella putrefaciens CN-32 5080457 YP_001183900.1 CDS Sputcn32_2380 NC_009438.1 2757591 2758073 R PFAM: protein of unknown function DUF412; KEGG: shm:Shewmr7_1559 protein of unknown function DUF412; hypothetical protein complement(2757591..2758073) Shewanella putrefaciens CN-32 5080458 YP_001183901.1 CDS Sputcn32_2381 NC_009438.1 2758175 2759377 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2758175..2759377 Shewanella putrefaciens CN-32 5080459 YP_001183902.1 CDS Sputcn32_2382 NC_009438.1 2759496 2761649 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2759496..2761649 Shewanella putrefaciens CN-32 5080460 YP_001183903.1 CDS Sputcn32_2383 NC_009438.1 2762132 2762560 D KEGG: son:SO2917 hypothetical protein; hypothetical protein 2762132..2762560 Shewanella putrefaciens CN-32 5080461 YP_001183904.1 CDS Sputcn32_2384 NC_009438.1 2762684 2762887 R KEGG: shm:Shewmr7_1553 hypothetical protein; hypothetical protein complement(2762684..2762887) Shewanella putrefaciens CN-32 5080462 YP_001183905.1 CDS Sputcn32_2385 NC_009438.1 2762993 2763907 R KEGG: son:SO2919 hypothetical protein; hypothetical protein complement(2762993..2763907) Shewanella putrefaciens CN-32 5080463 YP_001183906.1 CDS Sputcn32_2386 NC_009438.1 2763915 2765021 R PFAM: protein of unknown function UPF0118; KEGG: shm:Shewmr7_1550 protein of unknown function UPF0118; hypothetical protein complement(2763915..2765021) Shewanella putrefaciens CN-32 5080464 YP_001183907.1 CDS folX NC_009438.1 2765119 2765490 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2765119..2765490 Shewanella putrefaciens CN-32 5080465 YP_001183908.1 CDS Sputcn32_2388 NC_009438.1 2765585 2766478 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: shm:Shewmr7_1548 hypothetical protein; hypothetical protein 2765585..2766478 Shewanella putrefaciens CN-32 5080466 YP_001183909.1 CDS Sputcn32_2389 NC_009438.1 2766994 2768217 D PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter; sodium/glutamate symporter 2766994..2768217 Shewanella putrefaciens CN-32 5080467 YP_001183910.1 CDS Sputcn32_2390 NC_009438.1 2768276 2770771 R PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein complement(2768276..2770771) Shewanella putrefaciens CN-32 5080468 YP_001183911.1 CDS Sputcn32_2391 NC_009438.1 2770774 2771529 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_1479 ABC transporter related; ABC transporter-like protein complement(2770774..2771529) Shewanella putrefaciens CN-32 5080469 YP_001183912.1 CDS Sputcn32_2392 NC_009438.1 2771582 2772181 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: she:Shewmr4_1478 arylesterase; arylesterase 2771582..2772181 Shewanella putrefaciens CN-32 5080470 YP_001183913.1 CDS Sputcn32_2393 NC_009438.1 2772327 2773394 D KEGG: shm:Shewmr7_1542 hypothetical protein; hypothetical protein 2772327..2773394 Shewanella putrefaciens CN-32 5080471 YP_001183914.1 CDS Sputcn32_2394 NC_009438.1 2773488 2774504 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(2773488..2774504) Shewanella putrefaciens CN-32 5080472 YP_001183915.1 CDS Sputcn32_2395 NC_009438.1 2774628 2777102 R KEGG: she:Shewmr4_1469 hypothetical protein; hypothetical protein complement(2774628..2777102) Shewanella putrefaciens CN-32 5080473 YP_001183916.1 CDS Sputcn32_2396 NC_009438.1 2777364 2778101 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_1534 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2777364..2778101 Shewanella putrefaciens CN-32 5080474 YP_001183917.1 CDS Sputcn32_2397 NC_009438.1 2778149 2779123 R KEGG: son:SO2936 hypothetical protein; hypothetical protein complement(2778149..2779123) Shewanella putrefaciens CN-32 5080475 YP_001183918.1 CDS Sputcn32_2398 NC_009438.1 2779224 2780099 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: shm:Shewmr7_1533 pseudouridine synthase, Rsu; pseudouridine synthase complement(2779224..2780099) Shewanella putrefaciens CN-32 5080476 YP_001183919.1 CDS Sputcn32_2399 NC_009438.1 2780092 2780688 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: shm:Shewmr7_1532 putative transcriptional regulator; putative transcriptional regulator complement(2780092..2780688) Shewanella putrefaciens CN-32 5080477 YP_001183920.1 CDS Sputcn32_2400 NC_009438.1 2780692 2781480 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; chromosome segregation and condensation protein ScpA complement(2780692..2781480) Shewanella putrefaciens CN-32 5080478 YP_001183921.1 CDS Sputcn32_2401 NC_009438.1 2781639 2782259 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(2781639..2782259) Shewanella putrefaciens CN-32 5080479 YP_001183922.1 CDS Sputcn32_2402 NC_009438.1 2782256 2783116 R PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: she:Shewmr4_1463 PHP C-terminal domain protein; phosphotransferase domain-containing protein complement(2782256..2783116) Shewanella putrefaciens CN-32 5080480 YP_001183923.1 CDS Sputcn32_2403 NC_009438.1 2783532 2785157 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2783532..2785157 Shewanella putrefaciens CN-32 5080481 YP_001183924.1 CDS Sputcn32_2404 NC_009438.1 2785167 2785769 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2785167..2785769 Shewanella putrefaciens CN-32 5080482 YP_001183925.1 CDS trpD NC_009438.1 2785766 2786812 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2785766..2786812 Shewanella putrefaciens CN-32 5080483 YP_001183926.1 CDS Sputcn32_2406 NC_009438.1 2786819 2788297 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 2786819..2788297 Shewanella putrefaciens CN-32 5080484 YP_001183927.1 CDS Sputcn32_2407 NC_009438.1 2788410 2789600 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2788410..2789600 Shewanella putrefaciens CN-32 5080485 YP_001183928.1 CDS trpA NC_009438.1 2789606 2790442 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2789606..2790442 Shewanella putrefaciens CN-32 5080486 YP_001183929.1 CDS Sputcn32_2409 NC_009438.1 2790513 2790944 D KEGG: she:Shewmr4_1456 hypothetical protein; hypothetical protein 2790513..2790944 Shewanella putrefaciens CN-32 5080487 YP_001183930.1 CDS Sputcn32_2410 NC_009438.1 2791016 2791300 D KEGG: son:SO3029 hypothetical protein; hypothetical protein 2791016..2791300 Shewanella putrefaciens CN-32 5080488 YP_001183931.1 CDS Sputcn32_2411 NC_009438.1 2791987 2793504 D KEGG: shm:Shewmr7_1520 L-lysine 6-monooxygenase (NADPH); L-lysine 6-monooxygenase 2791987..2793504 Shewanella putrefaciens CN-32 5080489 YP_001183932.1 CDS Sputcn32_2412 NC_009438.1 2793504 2794193 D KEGG: son:SO3031 siderophore biosynthesis protein, putative; siderophore biosynthesis protein 2793504..2794193 Shewanella putrefaciens CN-32 5080490 YP_001183933.1 CDS Sputcn32_2413 NC_009438.1 2794194 2796122 D PFAM: IucA/IucC family protein; KEGG: she:Shewmr4_1452 IucA/IucC family protein; IucA/IucC family protein 2794194..2796122 Shewanella putrefaciens CN-32 5080491 YP_001183934.1 CDS Sputcn32_2414 NC_009438.1 2796219 2798432 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_1517 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2796219..2798432 Shewanella putrefaciens CN-32 5080492 YP_001183935.1 CDS Sputcn32_2415 NC_009438.1 2798577 2799701 D PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative; ferric iron reductase 2798577..2799701 Shewanella putrefaciens CN-32 5080493 YP_001183936.1 CDS Sputcn32_2416 NC_009438.1 2799921 2800466 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 2799921..2800466 Shewanella putrefaciens CN-32 5080494 YP_001183937.1 CDS Sputcn32_2417 NC_009438.1 2800466 2800765 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2800466..2800765 Shewanella putrefaciens CN-32 5080495 YP_001183938.1 CDS Sputcn32_2418 NC_009438.1 2800765 2801577 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2800765..2801577 Shewanella putrefaciens CN-32 5080496 YP_001183939.1 CDS Sputcn32_2419 NC_009438.1 2801713 2802150 R KEGG: rpe:RPE_3539 hypothetical protein; hypothetical protein complement(2801713..2802150) Shewanella putrefaciens CN-32 5080497 YP_001183940.1 CDS Sputcn32_2420 NC_009438.1 2802224 2802655 R KEGG: shm:Shewmr7_1510 hypothetical protein; hypothetical protein complement(2802224..2802655) Shewanella putrefaciens CN-32 5080498 YP_001183941.1 CDS Sputcn32_2421 NC_009438.1 2802762 2803193 R KEGG: son:SO3045 hypothetical protein; hypothetical protein complement(2802762..2803193) Shewanella putrefaciens CN-32 5080499 YP_001183942.1 CDS Sputcn32_2422 NC_009438.1 2803553 2805007 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1442 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2803553..2805007) Shewanella putrefaciens CN-32 5078556 YP_001183943.1 CDS Sputcn32_2423 NC_009438.1 2805135 2805626 R PFAM: protein of unknown function DUF1097; KEGG: shm:Shewmr7_1506 protein of unknown function DUF1097; hypothetical protein complement(2805135..2805626) Shewanella putrefaciens CN-32 5078557 YP_001183944.1 CDS Sputcn32_2424 NC_009438.1 2806013 2808259 R PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(2806013..2808259) Shewanella putrefaciens CN-32 5078558 YP_001183945.1 CDS Sputcn32_2425 NC_009438.1 2808261 2808764 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: shm:Shewmr7_1504 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2808261..2808764) Shewanella putrefaciens CN-32 5078559 YP_001183946.1 CDS Sputcn32_2426 NC_009438.1 2808768 2809433 R KEGG: she:Shewmr4_1438 hypothetical protein; hypothetical protein complement(2808768..2809433) Shewanella putrefaciens CN-32 5078560 YP_001183947.1 CDS Sputcn32_2427 NC_009438.1 2809442 2810458 R PFAM: protein of unknown function DUF182; KEGG: she:Shewmr4_1437 protein of unknown function DUF182; hypothetical protein complement(2809442..2810458) Shewanella putrefaciens CN-32 5078561 YP_001183948.1 CDS Sputcn32_2428 NC_009438.1 2810700 2811344 R PFAM: beta-lactamase domain protein; KEGG: shm:Shewmr7_1500 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(2810700..2811344) Shewanella putrefaciens CN-32 5078562 YP_001183949.1 CDS Sputcn32_2429 NC_009438.1 2811526 2812815 D PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_1434 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 2811526..2812815 Shewanella putrefaciens CN-32 5078563 YP_001183950.1 CDS Sputcn32_2430 NC_009438.1 2813037 2813444 R KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c complement(2813037..2813444) Shewanella putrefaciens CN-32 5078564 YP_001183951.1 CDS Sputcn32_2431 NC_009438.1 2813463 2815100 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase complement(2813463..2815100) Shewanella putrefaciens CN-32 5078565 YP_001183952.1 CDS Sputcn32_2432 NC_009438.1 2815141 2816694 R TIGRFAM: flavocytochrome c; PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c complement(2815141..2816694) Shewanella putrefaciens CN-32 5078566 YP_001183953.1 CDS Sputcn32_2433 NC_009438.1 2816860 2818386 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative; sigma-54 dependent trancsriptional regulator 2816860..2818386 Shewanella putrefaciens CN-32 5078567 YP_001183954.1 CDS Sputcn32_2434 NC_009438.1 2818516 2819685 R PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative; porin complement(2818516..2819685) Shewanella putrefaciens CN-32 5078568 YP_001183955.1 CDS Sputcn32_2435 NC_009438.1 2819934 2822060 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2819934..2822060) Shewanella putrefaciens CN-32 5078569 YP_001183956.1 CDS Sputcn32_2436 NC_009438.1 2822223 2822513 D KEGG: shm:Shewmr7_1497 hypothetical protein; hypothetical protein 2822223..2822513 Shewanella putrefaciens CN-32 5078570 YP_001183957.1 CDS Sputcn32_2437 NC_009438.1 2822616 2824130 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2822616..2824130) Shewanella putrefaciens CN-32 5078571 YP_001183958.1 CDS Sputcn32_2438 NC_009438.1 2824262 2824750 R PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein complement(2824262..2824750) Shewanella putrefaciens CN-32 5078572 YP_001183959.1 CDS Sputcn32_2439 NC_009438.1 2824865 2825644 R PFAM: Sporulation domain protein; KEGG: shm:Shewmr7_1493 sporulation domain protein; sporulation domain-containing protein complement(2824865..2825644) Shewanella putrefaciens CN-32 5078573 YP_001183960.1 CDS Sputcn32_2440 NC_009438.1 2825628 2826899 R KEGG: she:Shewmr4_1427 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(2825628..2826899) Shewanella putrefaciens CN-32 5078574 YP_001183961.1 CDS truA NC_009438.1 2826969 2827754 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2826969..2827754) Shewanella putrefaciens CN-32 5078575 YP_001183962.1 CDS Sputcn32_2442 NC_009438.1 2827857 2831150 R KEGG: shm:Shewmr7_1490 hypothetical protein; hypothetical protein complement(2827857..2831150) Shewanella putrefaciens CN-32 5078576 YP_001183963.1 CDS Sputcn32_2443 NC_009438.1 2831328 2832344 R KEGG: shm:Shewmr7_1489 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate-semialdehyde dehydrogenase complement(2831328..2832344) Shewanella putrefaciens CN-32 5078577 YP_001183964.1 CDS Sputcn32_2444 NC_009438.1 2832347 2833477 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(2832347..2833477) Shewanella putrefaciens CN-32 5078578 YP_001183965.1 CDS Sputcn32_2445 NC_009438.1 2833636 2834871 R PFAM: beta-ketoacyl synthase; KEGG: shm:Shewmr7_1487 beta-ketoacyl synthase; beta-ketoacyl synthase complement(2833636..2834871) Shewanella putrefaciens CN-32 5078579 YP_001183966.1 CDS Sputcn32_2446 NC_009438.1 2834986 2837028 D PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_1486 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2834986..2837028 Shewanella putrefaciens CN-32 5078580 YP_001183967.1 CDS Sputcn32_2447 NC_009438.1 2837125 2837898 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_1485 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(2837125..2837898) Shewanella putrefaciens CN-32 5078581 YP_001183968.1 CDS Sputcn32_2448 NC_009438.1 2837888 2838172 R KEGG: she:Shewmr4_1419 hypothetical protein; hypothetical protein complement(2837888..2838172) Shewanella putrefaciens CN-32 5078582 YP_001183969.1 CDS Sputcn32_2449 NC_009438.1 2838177 2839355 R PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase complement(2838177..2839355) Shewanella putrefaciens CN-32 5078583 YP_001183970.1 CDS Sputcn32_2450 NC_009438.1 2839406 2840581 R PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1482 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2839406..2840581) Shewanella putrefaciens CN-32 5078584 YP_001183971.1 CDS Sputcn32_2451 NC_009438.1 2840649 2841743 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2840649..2841743) Shewanella putrefaciens CN-32 5078585 YP_001183972.1 CDS Sputcn32_2452 NC_009438.1 2841866 2842810 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2841866..2842810) Shewanella putrefaciens CN-32 5078586 YP_001183973.1 CDS Sputcn32_2453 NC_009438.1 2842892 2843422 D PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein 2842892..2843422 Shewanella putrefaciens CN-32 5078587 YP_001183974.1 CDS Sputcn32_2454 NC_009438.1 2843500 2843970 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_1413 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA complement(2843500..2843970) Shewanella putrefaciens CN-32 5078588 YP_001183975.1 CDS Sputcn32_2455 NC_009438.1 2844140 2846929 D PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_1477 peptidase M16 domain protein; peptidase M16 domain-containing protein 2844140..2846929 Shewanella putrefaciens CN-32 5078589 YP_001183976.1 CDS Sputcn32_2456 NC_009438.1 2847181 2851497 D KEGG: she:Shewmr4_1411 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2847181..2851497 Shewanella putrefaciens CN-32 5078590 YP_001183977.1 CDS Sputcn32_2457 NC_009438.1 2851607 2852071 D KEGG: son:SO3085 hypothetical protein; hypothetical protein 2851607..2852071 Shewanella putrefaciens CN-32 5078591 YP_001183978.1 CDS Sputcn32_2458 NC_009438.1 2852368 2852568 R KEGG: son:SO3087 hypothetical protein; hypothetical protein complement(2852368..2852568) Shewanella putrefaciens CN-32 5078592 YP_001183979.1 CDS fadJ NC_009438.1 2852897 2855017 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha complement(2852897..2855017) Shewanella putrefaciens CN-32 5078593 YP_001183980.1 CDS fadI NC_009438.1 2855023 2856333 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2855023..2856333) Shewanella putrefaciens CN-32 5078594 YP_001183981.1 CDS Sputcn32_2461 NC_009438.1 2856545 2857552 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: shm:Shewmr7_1471 ATPase associated with various cellular activities, AAA_3; ATPase 2856545..2857552 Shewanella putrefaciens CN-32 5078595 YP_001183982.1 CDS Sputcn32_2462 NC_009438.1 2857577 2858530 D PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein 2857577..2858530 Shewanella putrefaciens CN-32 5078596 YP_001183983.1 CDS Sputcn32_2463 NC_009438.1 2858610 2859173 D KEGG: shm:Shewmr7_1469 hypothetical protein; hypothetical protein 2858610..2859173 Shewanella putrefaciens CN-32 5078597 YP_001183984.1 CDS Sputcn32_2464 NC_009438.1 2859167 2860186 D PFAM: von Willebrand factor, type A; KEGG: shm:Shewmr7_1468 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 2859167..2860186 Shewanella putrefaciens CN-32 5078598 YP_001183985.1 CDS Sputcn32_2465 NC_009438.1 2860186 2862177 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: she:Shewmr4_1402 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2860186..2862177 Shewanella putrefaciens CN-32 5078599 YP_001183986.1 CDS Sputcn32_2466 NC_009438.1 2862171 2863814 D KEGG: shm:Shewmr7_1466 hypothetical protein; hypothetical protein 2862171..2863814 Shewanella putrefaciens CN-32 5078600 YP_001183987.1 CDS Sputcn32_2467 NC_009438.1 2863890 2864453 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2863890..2864453 Shewanella putrefaciens CN-32 5078601 YP_001183988.1 CDS Sputcn32_2468 NC_009438.1 2864446 2865150 D KEGG: she:Shewmr4_1399 hypothetical protein; hypothetical protein 2864446..2865150 Shewanella putrefaciens CN-32 5078602 YP_001183989.1 CDS Sputcn32_2469 NC_009438.1 2865265 2866758 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: shm:Shewmr7_1463 sodium/proline symporter; sodium/proline symporter 2865265..2866758 Shewanella putrefaciens CN-32 5078603 YP_001183990.1 CDS Sputcn32_2470 NC_009438.1 2867080 2868417 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein 2867080..2868417 Shewanella putrefaciens CN-32 5078604 YP_001183991.1 CDS Sputcn32_2471 NC_009438.1 2868522 2868908 D KEGG: shm:Shewmr7_1461 hypothetical protein; hypothetical protein 2868522..2868908 Shewanella putrefaciens CN-32 5078605 YP_001183992.1 CDS Sputcn32_2472 NC_009438.1 2869016 2869732 D PFAM: protein of unknown function DUF541; KEGG: shm:Shewmr7_1460 protein of unknown function DUF541; hypothetical protein 2869016..2869732 Shewanella putrefaciens CN-32 5078606 YP_001183993.1 CDS Sputcn32_2473 NC_009438.1 2869903 2870925 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1394 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2869903..2870925 Shewanella putrefaciens CN-32 5080890 YP_001183994.1 CDS Sputcn32_2474 NC_009438.1 2870951 2874178 D PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1393 acriflavin resistance protein; acriflavin resistance protein 2870951..2874178 Shewanella putrefaciens CN-32 5080891 YP_001183995.1 CDS Sputcn32_2475 NC_009438.1 2874220 2874432 D KEGG: shm:Shewmr7_1457 hypothetical protein; hypothetical protein 2874220..2874432 Shewanella putrefaciens CN-32 5080892 YP_001183996.1 CDS Sputcn32_2476 NC_009438.1 2874506 2874844 D PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein 2874506..2874844 Shewanella putrefaciens CN-32 5080893 YP_001183997.1 CDS Sputcn32_2477 NC_009438.1 2875373 2877844 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: shm:Shewmr7_1455 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2875373..2877844 Shewanella putrefaciens CN-32 5080894 YP_001183998.1 CDS Sputcn32_2478 NC_009438.1 2877901 2878446 R PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein complement(2877901..2878446) Shewanella putrefaciens CN-32 5080895 YP_001183999.1 CDS Sputcn32_2479 NC_009438.1 2878541 2879452 R TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; siroheme synthase complement(2878541..2879452) Shewanella putrefaciens CN-32 5080896 YP_001184000.1 CDS Sputcn32_2480 NC_009438.1 2879597 2879914 R KEGG: shm:Shewmr7_1451 hypothetical protein; hypothetical protein complement(2879597..2879914) Shewanella putrefaciens CN-32 5080897 YP_001184001.1 CDS secF NC_009438.1 2880148 2881095 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(2880148..2881095) Shewanella putrefaciens CN-32 5080898 YP_001184002.1 CDS secD NC_009438.1 2881108 2882958 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(2881108..2882958) Shewanella putrefaciens CN-32 5080899 YP_001184003.1 CDS yajC NC_009438.1 2882976 2883308 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(2882976..2883308) Shewanella putrefaciens CN-32 5080900 YP_001184004.1 CDS tgt NC_009438.1 2883336 2884460 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2883336..2884460) Shewanella putrefaciens CN-32 5080901 YP_001184005.1 CDS queA NC_009438.1 2884620 2885657 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2884620..2885657) Shewanella putrefaciens CN-32 5080902 YP_001184006.1 CDS Sputcn32_2486 NC_009438.1 2885714 2885932 R KEGG: son:SO3115 hypothetical protein; hypothetical protein complement(2885714..2885932) Shewanella putrefaciens CN-32 5080903 YP_001184007.1 CDS Sputcn32_2487 NC_009438.1 2886018 2886653 D PFAM: protein of unknown function DUF479; KEGG: shm:Shewmr7_1444 protein of unknown function DUF479; hypothetical protein 2886018..2886653 Shewanella putrefaciens CN-32 5080904 YP_001184008.1 CDS Sputcn32_2488 NC_009438.1 2886865 2887536 D PFAM: pseudouridine synthase; KEGG: shm:Shewmr7_1442 pseudouridylate synthase; pseudouridylate synthase 2886865..2887536 Shewanella putrefaciens CN-32 5080905 YP_001184009.1 CDS Sputcn32_2489 NC_009438.1 2887593 2888027 R KEGG: son:SO3119 hypothetical protein; hypothetical protein complement(2887593..2888027) Shewanella putrefaciens CN-32 5080906 YP_001184010.1 CDS Sputcn32_2490 NC_009438.1 2888350 2889729 D PFAM: oxidoreductase domain protein; KEGG: shm:Shewmr7_1440 twin-arginine translocation pathway signal; oxidoreductase domain-containing protein 2888350..2889729 Shewanella putrefaciens CN-32 5080907 YP_001184011.1 CDS Sputcn32_2491 NC_009438.1 2889792 2890328 R PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: son:SO3121 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 complement(2889792..2890328) Shewanella putrefaciens CN-32 5080908 YP_001184012.1 CDS Sputcn32_2492 NC_009438.1 2890393 2891619 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(2890393..2891619) Shewanella putrefaciens CN-32 5080909 YP_001184013.1 CDS Sputcn32_2493 NC_009438.1 2891773 2892672 R PFAM: response regulator receiver; CheW domain protein; KEGG: shm:Shewmr7_1437 response regulator receiver modulated CheW protein; putative CheW protein complement(2891773..2892672) Shewanella putrefaciens CN-32 5080910 YP_001184014.1 CDS Sputcn32_2494 NC_009438.1 2892804 2893274 R PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; dual specificity protein phosphatase complement(2892804..2893274) Shewanella putrefaciens CN-32 5080911 YP_001184015.1 CDS Sputcn32_2495 NC_009438.1 2893339 2894622 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_1434 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(2893339..2894622) Shewanella putrefaciens CN-32 5080912 YP_001184016.1 CDS Sputcn32_2496 NC_009438.1 2894670 2895227 R KEGG: shm:Shewmr7_1433 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2894670..2895227) Shewanella putrefaciens CN-32 5080913 YP_001184017.1 CDS Sputcn32_2497 NC_009438.1 2895273 2896964 R PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative; alcohol dehydrogenase complement(2895273..2896964) Shewanella putrefaciens CN-32 5080914 YP_001184018.1 CDS Sputcn32_2498 NC_009438.1 2897449 2899278 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_1366 ABC transporter related; ABC transporter-like protein 2897449..2899278 Shewanella putrefaciens CN-32 5080915 YP_001184019.1 CDS gltX NC_009438.1 2901539 2902948 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2901539..2902948) Shewanella putrefaciens CN-32 5080925 YP_001184020.1 CDS Sputcn32_2500 NC_009438.1 2904592 2905614 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: shm:Shewmr7_1428 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 2904592..2905614 Shewanella putrefaciens CN-32 5080844 YP_001184021.1 CDS Sputcn32_2501 NC_009438.1 2905677 2906321 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: she:Shewmr4_1362 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 2905677..2906321 Shewanella putrefaciens CN-32 5080845 YP_001184022.1 CDS Sputcn32_2502 NC_009438.1 2906321 2907718 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: shm:Shewmr7_1426 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 2906321..2907718 Shewanella putrefaciens CN-32 5080846 YP_001184023.1 CDS Sputcn32_2503 NC_009438.1 2907830 2909641 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_1360 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2907830..2909641 Shewanella putrefaciens CN-32 5080847 YP_001184024.1 CDS Sputcn32_2504 NC_009438.1 2909638 2911017 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1424 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 2909638..2911017 Shewanella putrefaciens CN-32 5080848 YP_001184025.1 CDS Sputcn32_2505 NC_009438.1 2911124 2914195 R KEGG: she:Shewmr4_1358 hypothetical protein; hypothetical protein complement(2911124..2914195) Shewanella putrefaciens CN-32 5080849 YP_001184026.1 CDS Sputcn32_2506 NC_009438.1 2914298 2914876 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2914298..2914876) Shewanella putrefaciens CN-32 5080850 YP_001184027.1 CDS Sputcn32_2507 NC_009438.1 2915419 2917521 D KEGG: she:Shewmr4_1356 hypothetical protein; hypothetical protein 2915419..2917521 Shewanella putrefaciens CN-32 5080851 YP_001184028.1 CDS Sputcn32_2508 NC_009438.1 2917722 2919875 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_1420 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 2917722..2919875 Shewanella putrefaciens CN-32 5080852 YP_001184029.1 CDS Sputcn32_2509 NC_009438.1 2919947 2921515 R PFAM: Na+/H+ antiporter NhaC; KEGG: shm:Shewmr7_1419 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(2919947..2921515) Shewanella putrefaciens CN-32 5080853 YP_001184030.1 CDS Sputcn32_2510 NC_009438.1 2921888 2922814 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: shm:Shewmr7_1418 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(2921888..2922814) Shewanella putrefaciens CN-32 5080854 YP_001184031.1 CDS Sputcn32_2511 NC_009438.1 2922815 2923564 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: shm:Shewmr7_1417 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(2922815..2923564) Shewanella putrefaciens CN-32 5080855 YP_001184032.1 CDS Sputcn32_2512 NC_009438.1 2923877 2924269 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: shm:Shewmr7_1416 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 2923877..2924269 Shewanella putrefaciens CN-32 5080856 YP_001184033.1 CDS Sputcn32_2513 NC_009438.1 2924485 2927574 D PFAM: amidohydrolase; KEGG: shm:Shewmr7_1415 amidohydrolase; amidohydrolase 2924485..2927574 Shewanella putrefaciens CN-32 5080857 YP_001184034.1 CDS Sputcn32_2514 NC_009438.1 2927574 2928890 D KEGG: son:SO3149 hypothetical protein; hypothetical protein 2927574..2928890 Shewanella putrefaciens CN-32 5080858 YP_001184035.1 CDS Sputcn32_2515 NC_009438.1 2928967 2929347 D KEGG: shm:Shewmr7_1413 lipoprotein, putative; putative lipoprotein 2928967..2929347 Shewanella putrefaciens CN-32 5080859 YP_001184036.1 CDS Sputcn32_2516 NC_009438.1 2929486 2930220 D PFAM: protein of unknown function UPF0066; KEGG: she:Shewmr4_1347 protein of unknown function UPF0066; hypothetical protein 2929486..2930220 Shewanella putrefaciens CN-32 5080860 YP_001184037.1 CDS Sputcn32_2517 NC_009438.1 2930221 2930850 D PFAM: transferase hexapeptide repeat containing protein; KEGG: shm:Shewmr7_1411 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 2930221..2930850 Shewanella putrefaciens CN-32 5080861 YP_001184038.1 CDS Sputcn32_2518 NC_009438.1 2931085 2932800 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2931085..2932800 Shewanella putrefaciens CN-32 5080862 YP_001184039.1 CDS Sputcn32_2519 NC_009438.1 2932928 2934052 R PFAM: Patatin; KEGG: shm:Shewmr7_1409 patatin; patatin complement(2932928..2934052) Shewanella putrefaciens CN-32 5080863 YP_001184040.1 CDS Sputcn32_2520 NC_009438.1 2934347 2934598 D KEGG: son:SO3156.1 hypothetical protein; hypothetical protein 2934347..2934598 Shewanella putrefaciens CN-32 5080864 YP_001184041.1 CDS Sputcn32_2521 NC_009438.1 2934747 2935457 D KEGG: she:Shewmr4_1342 lipoprotein, putative; putative lipoprotein 2934747..2935457 Shewanella putrefaciens CN-32 5080865 YP_001184042.1 CDS Sputcn32_2522 NC_009438.1 2935466 2936251 D PFAM: protein of unknown function DUF1017; KEGG: shm:Shewmr7_1406 protein of unknown function DUF1017; hypothetical protein 2935466..2936251 Shewanella putrefaciens CN-32 5080866 YP_001184043.1 CDS Sputcn32_2523 NC_009438.1 2936251 2938617 D PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: son:SO3159 hypothetical protein; hypothetical protein 2936251..2938617 Shewanella putrefaciens CN-32 5080867 YP_001184044.1 CDS Sputcn32_2524 NC_009438.1 2939478 2939780 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nme:NMB0047 putative endonuclease; excinuclease ABC subunit C complement(2939478..2939780) Shewanella putrefaciens CN-32 5080868 YP_001184045.1 CDS Sputcn32_2525 NC_009438.1 2940654 2942003 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase complement(2940654..2942003) Shewanella putrefaciens CN-32 5080869 YP_001184046.1 CDS Sputcn32_2526 NC_009438.1 2942377 2942823 D PFAM: copper resistance lipoprotein NlpE; KEGG: son:SO3163 lipoprotein; copper resistance lipoprotein NlpE 2942377..2942823 Shewanella putrefaciens CN-32 5080870 YP_001184047.1 CDS Sputcn32_2527 NC_009438.1 2943787 2945727 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3171 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(2943787..2945727) Shewanella putrefaciens CN-32 5080871 YP_001184048.1 CDS Sputcn32_2528 NC_009438.1 2945858 2946412 R PFAM: sugar transferase; KEGG: son:SO3172 galactosyl transferase; sugar transferase complement(2945858..2946412) Shewanella putrefaciens CN-32 5080872 YP_001184049.1 CDS Sputcn32_2529 NC_009438.1 2946427 2947350 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: vvu:VV10777 nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase complement(2946427..2947350) Shewanella putrefaciens CN-32 5080873 YP_001184050.1 CDS Sputcn32_2530 NC_009438.1 2947343 2948284 R PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_1334 glycosyl transferase, family 2; glycosyl transferase family protein complement(2947343..2948284) Shewanella putrefaciens CN-32 5080874 YP_001184051.1 CDS Sputcn32_2531 NC_009438.1 2948311 2949243 R PFAM: glycosyl transferase, family 2; KEGG: spd:SPD_0321 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(2948311..2949243) Shewanella putrefaciens CN-32 5080875 YP_001184052.1 CDS Sputcn32_2532 NC_009438.1 2949245 2950393 R KEGG: bfs:BF1561 putative transmembrane protein; hypothetical protein complement(2949245..2950393) Shewanella putrefaciens CN-32 5080876 YP_001184053.1 CDS Sputcn32_2533 NC_009438.1 2950386 2951231 R PFAM: glycosyl transferase, family 2; KEGG: ana:all1766 probable glycosyl transferase; glycosyl transferase family protein complement(2950386..2951231) Shewanella putrefaciens CN-32 5080877 YP_001184054.1 CDS Sputcn32_2534 NC_009438.1 2951304 2952131 R KEGG: pfl:PFL_5102 glycosyltransferase, putative; hypothetical protein complement(2951304..2952131) Shewanella putrefaciens CN-32 5080878 YP_001184055.1 CDS Sputcn32_2535 NC_009438.1 2952196 2953425 R PFAM: polysaccharide biosynthesis protein; KEGG: bfs:BF1369 putative LPS biosynthesis related flippase; polysaccharide biosynthesis protein complement(2952196..2953425) Shewanella putrefaciens CN-32 5080879 YP_001184056.1 CDS Sputcn32_2536 NC_009438.1 2953409 2954500 R PFAM: glycosyl transferase, group 1; KEGG: cac:CAC2313 glycosyltransferase; group 1 glycosyl transferase complement(2953409..2954500) Shewanella putrefaciens CN-32 5080880 YP_001184057.1 CDS Sputcn32_2537 NC_009438.1 2954600 2955148 R KEGG: sbo:SBO_0865 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2954600..2955148) Shewanella putrefaciens CN-32 5080881 YP_001184058.1 CDS Sputcn32_2538 NC_009438.1 2955220 2956095 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sdn:Sden_2661 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(2955220..2956095) Shewanella putrefaciens CN-32 5080882 YP_001184059.1 CDS Sputcn32_2539 NC_009438.1 2956092 2956961 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfr:Sfri_2829 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(2956092..2956961) Shewanella putrefaciens CN-32 5080883 YP_001184060.1 CDS Sputcn32_2540 NC_009438.1 2957032 2958111 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase complement(2957032..2958111) Shewanella putrefaciens CN-32 5080884 YP_001184061.1 CDS Sputcn32_2541 NC_009438.1 2958327 2959316 R PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis protein complement(2958327..2959316) Shewanella putrefaciens CN-32 5080885 YP_001184062.1 CDS Sputcn32_2542 NC_009438.1 2959508 2959861 R crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein complement(2959508..2959861) Shewanella putrefaciens CN-32 5080886 YP_001184063.1 CDS Sputcn32_2543 NC_009438.1 2960057 2962816 R PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein complement(2960057..2962816) Shewanella putrefaciens CN-32 5080887 YP_001184064.1 CDS Sputcn32_2544 NC_009438.1 2964311 2964817 R KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; NusG antitermination factor complement(2964311..2964817) Shewanella putrefaciens CN-32 5080888 YP_001184065.1 CDS Sputcn32_2545 NC_009438.1 2965291 2966796 D TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1380 amino acid/peptide transporter; amino acid/peptide transporter 2965291..2966796 Shewanella putrefaciens CN-32 5080889 YP_001184066.1 CDS Sputcn32_2546 NC_009438.1 2967397 2968527 R PFAM: response regulator receiver; KEGG: shm:Shewmr7_1379 response regulator receiver protein; response regulator receiver protein complement(2967397..2968527) Shewanella putrefaciens CN-32 5078235 YP_001184067.1 CDS Sputcn32_2547 NC_009438.1 2968647 2969429 R PFAM: VacJ family lipoprotein; KEGG: shm:Shewmr7_1378 VacJ family lipoprotein; VacJ family lipoprotein complement(2968647..2969429) Shewanella putrefaciens CN-32 5078236 YP_001184068.1 CDS Sputcn32_2548 NC_009438.1 2969660 2971579 D KEGG: she:Shewmr4_1310 hypothetical protein; hypothetical protein 2969660..2971579 Shewanella putrefaciens CN-32 5078237 YP_001184069.1 CDS Sputcn32_2549 NC_009438.1 2971620 2971931 D KEGG: shm:Shewmr7_1376 FlhB domain protein; FlhB domain-containing protein 2971620..2971931 Shewanella putrefaciens CN-32 5078238 YP_001184070.1 CDS Sputcn32_2550 NC_009438.1 2972337 2972735 R KEGG: shm:Shewmr7_1375 hypothetical protein; hypothetical protein complement(2972337..2972735) Shewanella putrefaciens CN-32 5078239 YP_001184071.1 CDS Sputcn32_2551 NC_009438.1 2972906 2973400 R PFAM: CheW domain protein; KEGG: shm:Shewmr7_1374 CheW protein; putative CheW protein complement(2972906..2973400) Shewanella putrefaciens CN-32 5078240 YP_001184072.1 CDS Sputcn32_2552 NC_009438.1 2973408 2974400 R PFAM: CheW domain protein; KEGG: she:Shewmr4_1306 CheW protein; putative CheW protein complement(2973408..2974400) Shewanella putrefaciens CN-32 5078241 YP_001184073.1 CDS Sputcn32_2553 NC_009438.1 2974384 2975175 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase complement(2974384..2975175) Shewanella putrefaciens CN-32 5078242 YP_001184074.1 CDS Sputcn32_2554 NC_009438.1 2975231 2975665 R KEGG: she:Shewmr4_1304 hypothetical protein; hypothetical protein complement(2975231..2975665) Shewanella putrefaciens CN-32 5078243 YP_001184075.1 CDS Sputcn32_2555 NC_009438.1 2975688 2976806 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(2975688..2976806) Shewanella putrefaciens CN-32 5078244 YP_001184076.1 CDS Sputcn32_2556 NC_009438.1 2976827 2979052 R PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: shm:Shewmr7_1369 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(2976827..2979052) Shewanella putrefaciens CN-32 5078245 YP_001184077.1 CDS Sputcn32_2557 NC_009438.1 2979068 2979805 R PFAM: Chemotaxis phosphatase, CheZ; KEGG: shm:Shewmr7_1368 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ complement(2979068..2979805) Shewanella putrefaciens CN-32 5078246 YP_001184078.1 CDS Sputcn32_2558 NC_009438.1 2979819 2980202 R PFAM: response regulator receiver; KEGG: shm:Shewmr7_1367 response regulator receiver protein; response regulator receiver protein complement(2979819..2980202) Shewanella putrefaciens CN-32 5078247 YP_001184079.1 CDS fliA NC_009438.1 2980250 2980963 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(2980250..2980963) Shewanella putrefaciens CN-32 5078248 YP_001184080.1 CDS Sputcn32_2560 NC_009438.1 2980956 2981837 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_1365 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2980956..2981837) Shewanella putrefaciens CN-32 5078249 YP_001184081.1 CDS flhF NC_009438.1 2981842 2983224 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(2981842..2983224) Shewanella putrefaciens CN-32 5078250 YP_001184082.1 CDS flhA NC_009438.1 2983236 2985335 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2983236..2985335) Shewanella putrefaciens CN-32 5078251 YP_001184083.1 CDS flhB NC_009438.1 2985428 2986558 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2985428..2986558) Shewanella putrefaciens CN-32 5078252 YP_001184084.1 CDS fliR NC_009438.1 2986576 2987373 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(2986576..2987373) Shewanella putrefaciens CN-32 5078253 YP_001184085.1 CDS Sputcn32_2565 NC_009438.1 2987378 2987647 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(2987378..2987647) Shewanella putrefaciens CN-32 5078254 YP_001184086.1 CDS fliP NC_009438.1 2987665 2988411 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(2987665..2988411) Shewanella putrefaciens CN-32 5078255 YP_001184087.1 CDS Sputcn32_2567 NC_009438.1 2988408 2988827 R PFAM: flagellar biosynthesis protein, FliO; KEGG: she:Shewmr4_1291 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO complement(2988408..2988827) Shewanella putrefaciens CN-32 5078256 YP_001184088.1 CDS fliN NC_009438.1 2988854 2989237 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(2988854..2989237) Shewanella putrefaciens CN-32 5078257 YP_001184089.1 CDS fliM NC_009438.1 2989249 2990280 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(2989249..2990280) Shewanella putrefaciens CN-32 5078258 YP_001184090.1 CDS fliL NC_009438.1 2990320 2990835 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(2990320..2990835) Shewanella putrefaciens CN-32 5078259 YP_001184091.1 CDS Sputcn32_2571 NC_009438.1 2990927 2992402 R PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein complement(2990927..2992402) Shewanella putrefaciens CN-32 5078260 YP_001184092.1 CDS Sputcn32_2572 NC_009438.1 2992569 2993012 R TIGRFAM: flagellar export protein FliJ; KEGG: shm:Shewmr7_1353 flagellar export protein FliJ; flagellar export protein FliJ complement(2992569..2993012) Shewanella putrefaciens CN-32 5078261 YP_001184093.1 CDS fliI NC_009438.1 2993024 2994361 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(2993024..2994361) Shewanella putrefaciens CN-32 5078262 YP_001184094.1 CDS fliH NC_009438.1 2994330 2995286 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(2994330..2995286) Shewanella putrefaciens CN-32 5078263 YP_001184095.1 CDS fliG NC_009438.1 2995273 2996319 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(2995273..2996319) Shewanella putrefaciens CN-32 5078264 YP_001184096.1 CDS fliF NC_009438.1 2996312 2997994 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(2996312..2997994) Shewanella putrefaciens CN-32 5078265 YP_001184097.1 CDS Sputcn32_2577 NC_009438.1 2998040 2998375 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: she:Shewmr4_1281 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(2998040..2998375) Shewanella putrefaciens CN-32 5078266 YP_001184098.1 CDS Sputcn32_2578 NC_009438.1 2998595 2999935 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: she:Shewmr4_1280 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(2998595..2999935) Shewanella putrefaciens CN-32 5078267 YP_001184099.1 CDS Sputcn32_2579 NC_009438.1 2999928 3001010 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase complement(2999928..3001010) Shewanella putrefaciens CN-32 5078268 YP_001184100.1 CDS Sputcn32_2580 NC_009438.1 3001120 3002553 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_1345 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(3001120..3002553) Shewanella putrefaciens CN-32 5078269 YP_001184101.1 CDS fliS NC_009438.1 3002849 3003259 R flagellin specific chaperone; flagellar protein FliS complement(3002849..3003259) Shewanella putrefaciens CN-32 5078270 YP_001184102.1 CDS Sputcn32_2582 NC_009438.1 3003266 3003586 R KEGG: son:SO3234 hypothetical protein; hypothetical protein complement(3003266..3003586) Shewanella putrefaciens CN-32 5078271 YP_001184103.1 CDS Sputcn32_2583 NC_009438.1 3003598 3004971 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein complement(3003598..3004971) Shewanella putrefaciens CN-32 5078272 YP_001184104.1 CDS Sputcn32_2584 NC_009438.1 3005018 3005407 R PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein complement(3005018..3005407) Shewanella putrefaciens CN-32 5078273 YP_001184105.1 CDS Sputcn32_2585 NC_009438.1 3005553 3006368 R PFAM: flagellin domain protein; KEGG: sdn:Sden_1315 flagellin-like protein; flagellin domain-containing protein complement(3005553..3006368) Shewanella putrefaciens CN-32 5078274 YP_001184106.1 CDS Sputcn32_2586 NC_009438.1 3006629 3007450 R PFAM: flagellin domain protein; KEGG: sdn:Sden_1314 flagellin-like protein; flagellin domain-containing protein complement(3006629..3007450) Shewanella putrefaciens CN-32 5078275 YP_001184107.1 CDS flgL NC_009438.1 3007553 3008764 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(3007553..3008764) Shewanella putrefaciens CN-32 5078276 YP_001184108.1 CDS Sputcn32_2588 NC_009438.1 3008776 3010701 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: she:Shewmr4_1268 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(3008776..3010701) Shewanella putrefaciens CN-32 5078277 YP_001184109.1 CDS flgJ NC_009438.1 3010742 3011899 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(3010742..3011899) Shewanella putrefaciens CN-32 5078278 YP_001184110.1 CDS flgI NC_009438.1 3011917 3013008 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(3011917..3013008) Shewanella putrefaciens CN-32 5078279 YP_001184111.1 CDS flgH NC_009438.1 3013020 3013694 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein complement(3013020..3013694) Shewanella putrefaciens CN-32 5078280 YP_001184112.1 CDS flgG NC_009438.1 3013706 3014494 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(3013706..3014494) Shewanella putrefaciens CN-32 5078281 YP_001184113.1 CDS flgF NC_009438.1 3014505 3015248 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(3014505..3015248) Shewanella putrefaciens CN-32 5078282 YP_001184114.1 CDS flgE NC_009438.1 3015418 3016779 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(3015418..3016779) Shewanella putrefaciens CN-32 5078283 YP_001184115.1 CDS flgD NC_009438.1 3016847 3017608 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(3016847..3017608) Shewanella putrefaciens CN-32 5078284 YP_001184116.1 CDS flgC NC_009438.1 3017633 3018049 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(3017633..3018049) Shewanella putrefaciens CN-32 5080648 YP_001184117.1 CDS flgB NC_009438.1 3018052 3018456 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(3018052..3018456) Shewanella putrefaciens CN-32 5080649 YP_001184118.1 CDS Sputcn32_2598 NC_009438.1 3018601 3019440 R PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 12; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; protein-glutamate O-methyltransferase complement(3018601..3019440) Shewanella putrefaciens CN-32 5080650 YP_001184119.1 CDS Sputcn32_2599 NC_009438.1 3019552 3020472 R PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; putative CheW protein complement(3019552..3020472) Shewanella putrefaciens CN-32 5080651 YP_001184120.1 CDS flgA NC_009438.1 3020677 3021384 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 3020677..3021384 Shewanella putrefaciens CN-32 5080652 YP_001184121.1 CDS Sputcn32_2601 NC_009438.1 3021458 3021781 D PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: shm:Shewmr7_1325 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 3021458..3021781 Shewanella putrefaciens CN-32 5080653 YP_001184122.1 CDS Sputcn32_2602 NC_009438.1 3021784 3022209 D PFAM: FlgN family protein; KEGG: shm:Shewmr7_1324 FlgN family protein; FlgN family protein 3021784..3022209 Shewanella putrefaciens CN-32 5080654 YP_001184123.1 CDS Sputcn32_2603 NC_009438.1 3022566 3023015 R PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein complement(3022566..3023015) Shewanella putrefaciens CN-32 5080655 YP_001184124.1 CDS Sputcn32_2604 NC_009438.1 3023012 3023644 R KEGG: shm:Shewmr7_1322 hypothetical protein; hypothetical protein complement(3023012..3023644) Shewanella putrefaciens CN-32 5080656 YP_001184125.1 CDS Sputcn32_2605 NC_009438.1 3023928 3025094 D KEGG: she:Shewmr4_1251 hypothetical protein; hypothetical protein 3023928..3025094 Shewanella putrefaciens CN-32 5080657 YP_001184126.1 CDS Sputcn32_2606 NC_009438.1 3025436 3026299 D hypothetical protein 3025436..3026299 Shewanella putrefaciens CN-32 5080659 YP_001184127.1 CDS Sputcn32_2607 NC_009438.1 3026489 3026860 D hypothetical protein 3026489..3026860 Shewanella putrefaciens CN-32 5080660 YP_001184128.1 CDS Sputcn32_2608 NC_009438.1 3026860 3027180 D hypothetical protein 3026860..3027180 Shewanella putrefaciens CN-32 5080661 YP_001184129.1 CDS Sputcn32_2609 NC_009438.1 3027173 3029095 D PFAM: bacteriophage replication gene A; KEGG: vvy:VV1773 A protein; bacteriophage replication gene A 3027173..3029095 Shewanella putrefaciens CN-32 5080662 YP_001184130.1 CDS Sputcn32_2610 NC_009438.1 3029179 3031413 D KEGG: vvy:VV1770 hypothetical protein; hypothetical protein 3029179..3031413 Shewanella putrefaciens CN-32 5080663 YP_001184131.1 CDS Sputcn32_2611 NC_009438.1 3031547 3032698 D KEGG: vvy:VV1771 retron-type reverse transcriptase; retron-type reverse transcriptase 3031547..3032698 Shewanella putrefaciens CN-32 5080664 YP_001184132.1 CDS Sputcn32_2612 NC_009438.1 3033201 3034532 R PFAM: phage integrase family protein; KEGG: pol:Bpro_2964 phage integrase; phage integrase family protein complement(3033201..3034532) Shewanella putrefaciens CN-32 5080665 YP_001184133.1 CDS Sputcn32_2613 NC_009438.1 3034766 3036055 D KEGG: son:SO3259 hypothetical protein; hypothetical protein 3034766..3036055 Shewanella putrefaciens CN-32 5080666 YP_001184134.1 CDS Sputcn32_2614 NC_009438.1 3036052 3036345 D KEGG: son:SO3260 hypothetical protein; hypothetical protein 3036052..3036345 Shewanella putrefaciens CN-32 5080667 YP_001184135.1 CDS Sputcn32_2615 NC_009438.1 3036394 3037020 R KEGG: pau:PA14_50310 possible sugar nucleotidyltransferase; putative sugar nucleotidyltransferase complement(3036394..3037020) Shewanella putrefaciens CN-32 5080668 YP_001184136.1 CDS Sputcn32_2616 NC_009438.1 3037017 3037616 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pau:PA14_50320 hypothetical protein; HAD family hydrolase complement(3037017..3037616) Shewanella putrefaciens CN-32 5080669 YP_001184137.1 CDS Sputcn32_2617 NC_009438.1 3037626 3038366 R PFAM: Methyltransferase type 12; KEGG: pau:PA14_50330 hypothetical protein; type 12 methyltransferase complement(3037626..3038366) Shewanella putrefaciens CN-32 5080670 YP_001184138.1 CDS Sputcn32_2618 NC_009438.1 3038382 3039227 R KEGG: bfr:BF2579 putative cholinephosphotransferase; hypothetical protein complement(3038382..3039227) Shewanella putrefaciens CN-32 5080671 YP_001184139.1 CDS Sputcn32_2619 NC_009438.1 3039220 3040410 R KEGG: sus:Acid_1365 hypothetical protein; hypothetical protein complement(3039220..3040410) Shewanella putrefaciens CN-32 5080672 YP_001184140.1 CDS Sputcn32_2620 NC_009438.1 3040389 3041444 R PFAM: acyl-protein synthetase, LuxE; KEGG: sus:Acid_1364 acyl-protein synthetase, LuxE; acyl-protein synthetase, LuxE complement(3040389..3041444) Shewanella putrefaciens CN-32 5080673 YP_001184141.1 CDS Sputcn32_2621 NC_009438.1 3041441 3042802 R PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase; AMP-dependent synthetase and ligase complement(3041441..3042802) Shewanella putrefaciens CN-32 5080674 YP_001184142.1 CDS Sputcn32_2622 NC_009438.1 3042835 3043581 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sus:Acid_1362 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3042835..3043581) Shewanella putrefaciens CN-32 5080675 YP_001184143.1 CDS Sputcn32_2623 NC_009438.1 3043581 3043811 R KEGG: sus:Acid_1361 acyl carrier protein; acyl carrier protein complement(3043581..3043811) Shewanella putrefaciens CN-32 5080676 YP_001184144.1 CDS Sputcn32_2624 NC_009438.1 3043808 3044407 R KEGG: sus:Acid_6945 GCN5-related N-acetyltransferase; hypothetical protein complement(3043808..3044407) Shewanella putrefaciens CN-32 5080677 YP_001184145.1 CDS Sputcn32_2625 NC_009438.1 3044389 3045438 R PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: pfl:PFL_1625 NeuB family protein; N-acylneuraminate-9-phosphate synthase complement(3044389..3045438) Shewanella putrefaciens CN-32 5080678 YP_001184146.1 CDS Sputcn32_2626 NC_009438.1 3045442 3046557 R KEGG: pfl:PFL_1624 FlaR protein (FlaR); FlaR protein (FlaR) complement(3045442..3046557) Shewanella putrefaciens CN-32 5080679 YP_001184147.1 CDS Sputcn32_2627 NC_009438.1 3046554 3047258 R PFAM: acylneuraminate cytidylyltransferase; KEGG: par:Psyc_0656 putative acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(3046554..3047258) Shewanella putrefaciens CN-32 5080680 YP_001184148.1 CDS Sputcn32_2628 NC_009438.1 3047255 3048403 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: son:SO3270 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(3047255..3048403) Shewanella putrefaciens CN-32 5080681 YP_001184149.1 CDS Sputcn32_2629 NC_009438.1 3048400 3049395 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(3048400..3049395) Shewanella putrefaciens CN-32 5080682 YP_001184150.1 CDS Sputcn32_2630 NC_009438.1 3049776 3052241 D PFAM: protein of unknown function DUF115; KEGG: son:SO3273 hypothetical protein; hypothetical protein 3049776..3052241 Shewanella putrefaciens CN-32 5080683 YP_001184151.1 CDS Sputcn32_2631 NC_009438.1 3052357 3052836 D KEGG: shm:Shewmr7_1320 hypothetical protein; hypothetical protein 3052357..3052836 Shewanella putrefaciens CN-32 5080684 YP_001184152.1 CDS Sputcn32_2632 NC_009438.1 3052875 3053435 D KEGG: shm:Shewmr7_1319 hypothetical protein; hypothetical protein 3052875..3053435 Shewanella putrefaciens CN-32 5080685 YP_001184153.1 CDS Sputcn32_2633 NC_009438.1 3053454 3054398 R KEGG: she:Shewmr4_1248 hypothetical protein; hypothetical protein complement(3053454..3054398) Shewanella putrefaciens CN-32 5080686 YP_001184154.1 CDS Sputcn32_2634 NC_009438.1 3054516 3055145 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1317 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3054516..3055145) Shewanella putrefaciens CN-32 5080687 YP_001184155.1 CDS Sputcn32_2635 NC_009438.1 3055284 3056396 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit 3055284..3056396 Shewanella putrefaciens CN-32 5080688 YP_001184156.1 CDS Sputcn32_2636 NC_009438.1 3056396 3059473 D PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1245 acriflavin resistance protein; acriflavin resistance protein 3056396..3059473 Shewanella putrefaciens CN-32 5080689 YP_001184157.1 CDS Sputcn32_2637 NC_009438.1 3059699 3061702 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_1243 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3059699..3061702 Shewanella putrefaciens CN-32 5080690 YP_001184158.1 CDS Sputcn32_2638 NC_009438.1 3061769 3062005 R KEGG: she:Shewmr4_1960 hypothetical protein; hypothetical protein complement(3061769..3062005) Shewanella putrefaciens CN-32 5080691 YP_001184159.1 CDS Sputcn32_2639 NC_009438.1 3062210 3062326 R TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: shm:Shewmr7_1312 cyd operon protein YbgT; cyd operon protein YbgT complement(3062210..3062326) Shewanella putrefaciens CN-32 5080692 YP_001184160.1 CDS Sputcn32_2640 NC_009438.1 3062356 3063495 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(3062356..3063495) Shewanella putrefaciens CN-32 5080693 YP_001184161.1 CDS Sputcn32_2641 NC_009438.1 3063511 3065067 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: shm:Shewmr7_1310 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(3063511..3065067) Shewanella putrefaciens CN-32 5080694 YP_001184162.1 CDS Sputcn32_2642 NC_009438.1 3066311 3070192 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(3066311..3070192) Shewanella putrefaciens CN-32 5080695 YP_001184163.1 CDS Sputcn32_2643 NC_009438.1 3070471 3071904 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 3070471..3071904 Shewanella putrefaciens CN-32 5080696 YP_001184164.1 CDS Sputcn32_2644 NC_009438.1 3072362 3072856 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: she:Shewmr4_1236 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(3072362..3072856) Shewanella putrefaciens CN-32 5080697 YP_001184165.1 CDS guaA NC_009438.1 3073023 3074600 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3073023..3074600) Shewanella putrefaciens CN-32 5079956 YP_001184166.1 CDS Sputcn32_2646 NC_009438.1 3074718 3076184 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(3074718..3076184) Shewanella putrefaciens CN-32 5079957 YP_001184167.1 CDS xseA NC_009438.1 3076251 3077651 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 3076251..3077651 Shewanella putrefaciens CN-32 5079958 YP_001184168.1 CDS engA NC_009438.1 3077734 3079200 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3077734..3079200) Shewanella putrefaciens CN-32 5079959 YP_001184169.1 CDS Sputcn32_2649 NC_009438.1 3079280 3080467 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL complement(3079280..3080467) Shewanella putrefaciens CN-32 5079960 YP_001184170.1 CDS Sputcn32_2650 NC_009438.1 3080479 3081099 R KEGG: shm:Shewmr7_1301 hypothetical protein; hypothetical protein complement(3080479..3081099) Shewanella putrefaciens CN-32 5079961 YP_001184171.1 CDS hisS NC_009438.1 3081113 3082390 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3081113..3082390) Shewanella putrefaciens CN-32 5079962 YP_001184172.1 CDS ispG NC_009438.1 3082521 3083636 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3082521..3083636) Shewanella putrefaciens CN-32 5079963 YP_001184173.1 CDS Sputcn32_2653 NC_009438.1 3083686 3084771 R KEGG: she:Shewmr4_1227 hypothetical protein; hypothetical protein complement(3083686..3084771) Shewanella putrefaciens CN-32 5079964 YP_001184174.1 CDS Sputcn32_2654 NC_009438.1 3084768 3085556 R KEGG: she:Shewmr4_1226 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW complement(3084768..3085556) Shewanella putrefaciens CN-32 5079965 YP_001184175.1 CDS Sputcn32_2655 NC_009438.1 3085589 3086710 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(3085589..3086710) Shewanella putrefaciens CN-32 5079966 YP_001184176.1 CDS Sputcn32_2656 NC_009438.1 3086855 3087946 D PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: shm:Shewmr7_1295 protein of unknown function DUF21; hypothetical protein 3086855..3087946 Shewanella putrefaciens CN-32 5079967 YP_001184177.1 CDS Sputcn32_2657 NC_009438.1 3088086 3089831 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: shm:Shewmr7_1294 metallophosphoesterase; 5'-nucleotidase domain-containing protein 3088086..3089831 Shewanella putrefaciens CN-32 5079968 YP_001184178.1 CDS Sputcn32_2658 NC_009438.1 3089861 3090754 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_1222 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3089861..3090754) Shewanella putrefaciens CN-32 5079969 YP_001184179.1 CDS Sputcn32_2661 NC_009438.1 3093430 3094464 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: son:SO4548 transposase, IS110 family; transposase IS116/IS110/IS902 family protein complement(3093430..3094464) Shewanella putrefaciens CN-32 5079972 YP_001184180.1 CDS Sputcn32_2662 NC_009438.1 3094659 3095183 D KEGG: net:Neut_0366 hypothetical protein; hypothetical protein 3094659..3095183 Shewanella putrefaciens CN-32 5079973 YP_001184181.1 CDS Sputcn32_2663 NC_009438.1 3095190 3095546 D KEGG: shm:Shewmr7_1292 DoxX family protein; DoxX family protein 3095190..3095546 Shewanella putrefaciens CN-32 5079974 YP_001184182.1 CDS Sputcn32_2664 NC_009438.1 3095558 3096253 D PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: shm:Shewmr7_1291 pirin domain protein domain protein; pirin domain-containing protein 3095558..3096253 Shewanella putrefaciens CN-32 5079975 YP_001184183.1 CDS Sputcn32_2665 NC_009438.1 3096382 3096915 R PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_1219 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3096382..3096915) Shewanella putrefaciens CN-32 5079976 YP_001184184.1 CDS Sputcn32_2666 NC_009438.1 3096976 3097488 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_1289 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3096976..3097488) Shewanella putrefaciens CN-32 5079977 YP_001184185.1 CDS Sputcn32_2667 NC_009438.1 3097658 3097960 R KEGG: shm:Shewmr7_1288 NrfJ-related protein; NrfJ-like protein complement(3097658..3097960) Shewanella putrefaciens CN-32 5079978 YP_001184186.1 CDS Sputcn32_2668 NC_009438.1 3098087 3098296 R KEGG: she:Shewmr4_1216 hypothetical protein; hypothetical protein complement(3098087..3098296) Shewanella putrefaciens CN-32 5079979 YP_001184187.1 CDS Sputcn32_2669 NC_009438.1 3098454 3098912 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3328 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3098454..3098912) Shewanella putrefaciens CN-32 5079980 YP_001184188.1 CDS Sputcn32_2670 NC_009438.1 3099204 3100652 D PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_1212 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3099204..3100652 Shewanella putrefaciens CN-32 5079981 YP_001184189.1 CDS Sputcn32_2671 NC_009438.1 3100649 3102385 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase 3100649..3102385 Shewanella putrefaciens CN-32 5079982 YP_001184190.1 CDS Sputcn32_2672 NC_009438.1 3102486 3103310 D PFAM: protein of unknown function DUF980; KEGG: she:Shewmr4_1210 protein of unknown function DUF980; hypothetical protein 3102486..3103310 Shewanella putrefaciens CN-32 5079983 YP_001184191.1 CDS Sputcn32_2673 NC_009438.1 3103713 3104726 R PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: she:Shewmr4_1207 threonine aldolase; threonine aldolase complement(3103713..3104726) Shewanella putrefaciens CN-32 5079984 YP_001184192.1 CDS Sputcn32_2674 NC_009438.1 3105051 3105641 D PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein 3105051..3105641 Shewanella putrefaciens CN-32 5079985 YP_001184193.1 CDS Sputcn32_2675 NC_009438.1 3105676 3106503 D PFAM: MscS Mechanosensitive ion channel; KEGG: shm:Shewmr7_1276 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3105676..3106503 Shewanella putrefaciens CN-32 5079986 YP_001184194.1 CDS Sputcn32_2676 NC_009438.1 3106613 3107206 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_1275 redoxin domain protein; redoxin domain-containing protein 3106613..3107206 Shewanella putrefaciens CN-32 5079987 YP_001184195.1 CDS Sputcn32_2677 NC_009438.1 3107254 3107907 R PFAM: protein of unknown function UPF0126; KEGG: shm:Shewmr7_1274 protein of unknown function UPF0126; hypothetical protein complement(3107254..3107907) Shewanella putrefaciens CN-32 5079988 YP_001184196.1 CDS Sputcn32_2678 NC_009438.1 3108238 3108798 R KEGG: son:SO3343 hypothetical protein; hypothetical protein complement(3108238..3108798) Shewanella putrefaciens CN-32 5079989 YP_001184197.1 CDS Sputcn32_2679 NC_009438.1 3108977 3109291 D KEGG: shm:Shewmr7_1272 hypothetical protein; hypothetical protein 3108977..3109291 Shewanella putrefaciens CN-32 5079990 YP_001184198.1 CDS Sputcn32_2680 NC_009438.1 3109457 3109786 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 3109457..3109786 Shewanella putrefaciens CN-32 5079991 YP_001184199.1 CDS Sputcn32_2681 NC_009438.1 3109899 3110462 D PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein 3109899..3110462 Shewanella putrefaciens CN-32 5079992 YP_001184200.1 CDS Sputcn32_2682 NC_009438.1 3110494 3110919 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3110494..3110919 Shewanella putrefaciens CN-32 5079993 YP_001184201.1 CDS Sputcn32_2683 NC_009438.1 3110981 3111994 R PFAM: ferrochelatase; KEGG: shm:Shewmr7_1268 ferrochelatase; ferrochelatase complement(3110981..3111994) Shewanella putrefaciens CN-32 5079994 YP_001184202.1 CDS Sputcn32_2684 NC_009438.1 3112027 3112566 R PFAM: glutathione peroxidase; KEGG: shm:Shewmr7_1267 glutathione peroxidase; glutathione peroxidase complement(3112027..3112566) Shewanella putrefaciens CN-32 5079995 YP_001184203.1 CDS Sputcn32_2685 NC_009438.1 3112705 3113817 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: shm:Shewmr7_1266 twitching motility protein; twitching motility protein complement(3112705..3113817) Shewanella putrefaciens CN-32 5079996 YP_001184204.1 CDS Sputcn32_2686 NC_009438.1 3113827 3114864 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; twitching motility protein complement(3113827..3114864) Shewanella putrefaciens CN-32 5079997 YP_001184205.1 CDS Sputcn32_2687 NC_009438.1 3114900 3115598 D PFAM: alanine racemase domain protein; KEGG: shm:Shewmr7_1264 protein of unknown function UPF0001; alanine racemase domain-containing protein 3114900..3115598 Shewanella putrefaciens CN-32 5079998 YP_001184206.1 CDS Sputcn32_2688 NC_009438.1 3115779 3116597 D KEGG: son:SO3354 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 3115779..3116597 Shewanella putrefaciens CN-32 5079999 YP_001184207.1 CDS Sputcn32_2689 NC_009438.1 3116644 3117192 D PFAM: protein of unknown function YGGT; KEGG: she:Shewmr4_1191 protein of unknown function YGGT; hypothetical protein 3116644..3117192 Shewanella putrefaciens CN-32 5080000 YP_001184208.1 CDS Sputcn32_2690 NC_009438.1 3117192 3117482 D PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein 3117192..3117482 Shewanella putrefaciens CN-32 5080001 YP_001184209.1 CDS Sputcn32_2691 NC_009438.1 3117560 3117994 D KEGG: shm:Shewmr7_1260 hypothetical protein; hypothetical protein 3117560..3117994 Shewanella putrefaciens CN-32 5080002 YP_001184210.1 CDS Sputcn32_2692 NC_009438.1 3118105 3118722 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3118105..3118722 Shewanella putrefaciens CN-32 5080003 YP_001184211.1 CDS Sputcn32_2693 NC_009438.1 3118722 3119885 D KEGG: she:Shewmr4_1187 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3118722..3119885 Shewanella putrefaciens CN-32 5080004 YP_001184212.1 CDS Sputcn32_2694 NC_009438.1 3120039 3121925 D PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_1186 protein of unknown function DUF885; hypothetical protein 3120039..3121925 Shewanella putrefaciens CN-32 5080005 YP_001184213.1 CDS Sputcn32_2695 NC_009438.1 3122585 3123598 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1256 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3122585..3123598) Shewanella putrefaciens CN-32 5080006 YP_001184214.1 CDS Sputcn32_2696 NC_009438.1 3123911 3124732 R KEGG: shm:Shewmr7_1255 hypothetical protein; hypothetical protein complement(3123911..3124732) Shewanella putrefaciens CN-32 5079907 YP_001184215.1 CDS Sputcn32_2697 NC_009438.1 3124913 3125827 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3124913..3125827) Shewanella putrefaciens CN-32 5079908 YP_001184216.1 CDS Sputcn32_2698 NC_009438.1 3125827 3126153 R PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein complement(3125827..3126153) Shewanella putrefaciens CN-32 5079909 YP_001184217.1 CDS trmB NC_009438.1 3126202 3126918 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3126202..3126918) Shewanella putrefaciens CN-32 5079910 YP_001184218.1 CDS Sputcn32_2700 NC_009438.1 3127119 3128207 D TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: shm:Shewmr7_1251 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 3127119..3128207 Shewanella putrefaciens CN-32 5079911 YP_001184219.1 CDS Sputcn32_2701 NC_009438.1 3128210 3128488 D PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein 3128210..3128488 Shewanella putrefaciens CN-32 5079912 YP_001184220.1 CDS Sputcn32_2702 NC_009438.1 3128577 3129152 R PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein complement(3128577..3129152) Shewanella putrefaciens CN-32 5079913 YP_001184221.1 CDS Sputcn32_2703 NC_009438.1 3129157 3129708 R PFAM: cytochrome B561; KEGG: she:Shewmr4_1177 cytochrome b561; cytochrome B561 complement(3129157..3129708) Shewanella putrefaciens CN-32 5079914 YP_001184222.1 CDS Sputcn32_2704 NC_009438.1 3131154 3131339 R KEGG: shm:Shewmr7_1247 hypothetical protein; hypothetical protein complement(3131154..3131339) Shewanella putrefaciens CN-32 5079919 YP_001184223.1 CDS Sputcn32_2705 NC_009438.1 3131494 3131838 D KEGG: son:SO3374 hypothetical protein; hypothetical protein 3131494..3131838 Shewanella putrefaciens CN-32 5079920 YP_001184224.1 CDS Sputcn32_2706 NC_009438.1 3131959 3132504 R KEGG: shm:Shewmr7_1244 hypothetical protein; hypothetical protein complement(3131959..3132504) Shewanella putrefaciens CN-32 5079921 YP_001184225.1 CDS Sputcn32_2707 NC_009438.1 3132492 3133064 R KEGG: son:SO3377 hypothetical protein; hypothetical protein complement(3132492..3133064) Shewanella putrefaciens CN-32 5079922 YP_001184226.1 CDS Sputcn32_2708 NC_009438.1 3133068 3133721 R KEGG: son:SO3378 hypothetical protein; hypothetical protein complement(3133068..3133721) Shewanella putrefaciens CN-32 5079923 YP_001184227.1 CDS Sputcn32_2709 NC_009438.1 3133722 3134975 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(3133722..3134975) Shewanella putrefaciens CN-32 5079924 YP_001184228.1 CDS Sputcn32_2710 NC_009438.1 3134977 3135786 R PFAM: protein of unknown function DUF1365; KEGG: she:Shewmr4_1169 protein of unknown function DUF1365; hypothetical protein complement(3134977..3135786) Shewanella putrefaciens CN-32 5079925 YP_001184229.1 CDS Sputcn32_2711 NC_009438.1 3135783 3137033 R PFAM: amine oxidase; KEGG: shm:Shewmr7_1239 amine oxidase; amine oxidase complement(3135783..3137033) Shewanella putrefaciens CN-32 5079926 YP_001184230.1 CDS Sputcn32_2712 NC_009438.1 3137030 3137857 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: she:Shewmr4_1167 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3137030..3137857) Shewanella putrefaciens CN-32 5079927 YP_001184231.1 CDS Sputcn32_2713 NC_009438.1 3137857 3138294 R KEGG: shm:Shewmr7_1237 transcriptional regulator-related protein; transcriptional regulator-like protein complement(3137857..3138294) Shewanella putrefaciens CN-32 5079928 YP_001184232.1 CDS Sputcn32_2714 NC_009438.1 3138320 3139801 R PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase complement(3138320..3139801) Shewanella putrefaciens CN-32 5079929 YP_001184233.1 CDS Sputcn32_2715 NC_009438.1 3139839 3140819 R PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3139839..3140819) Shewanella putrefaciens CN-32 5079930 YP_001184234.1 CDS Sputcn32_2716 NC_009438.1 3140862 3141815 R PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: shm:Shewmr7_1234 protein of unknown function DUF1722; hypothetical protein complement(3140862..3141815) Shewanella putrefaciens CN-32 5079931 YP_001184235.1 CDS Sputcn32_2717 NC_009438.1 3142001 3142504 D KEGG: she:Shewmr4_1162 hypothetical protein; hypothetical protein 3142001..3142504 Shewanella putrefaciens CN-32 5079932 YP_001184236.1 CDS Sputcn32_2718 NC_009438.1 3142613 3143854 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(3142613..3143854) Shewanella putrefaciens CN-32 5079933 YP_001184237.1 CDS Sputcn32_2719 NC_009438.1 3144164 3146596 D KEGG: shm:Shewmr7_1230 peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 3144164..3146596 Shewanella putrefaciens CN-32 5079934 YP_001184238.1 CDS Sputcn32_2720 NC_009438.1 3146687 3147754 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: shm:Shewmr7_1229 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(3146687..3147754) Shewanella putrefaciens CN-32 5079935 YP_001184239.1 CDS Sputcn32_2721 NC_009438.1 3147888 3148469 D PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1228 transcriptional regulator, TetR family; TetR family transcriptional regulator 3147888..3148469 Shewanella putrefaciens CN-32 5079936 YP_001184240.1 CDS Sputcn32_2722 NC_009438.1 3148537 3148776 R KEGG: shm:Shewmr7_1227 hypothetical protein; hypothetical protein complement(3148537..3148776) Shewanella putrefaciens CN-32 5079937 YP_001184241.1 CDS Sputcn32_2723 NC_009438.1 3149096 3150664 R PFAM: chemotaxis sensory transducer; KEGG: shm:Shewmr7_1226 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3149096..3150664) Shewanella putrefaciens CN-32 5079938 YP_001184242.1 CDS Sputcn32_2724 NC_009438.1 3151086 3151808 D PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein 3151086..3151808 Shewanella putrefaciens CN-32 5079939 YP_001184243.1 CDS Sputcn32_2725 NC_009438.1 3151902 3152258 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1221 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(3151902..3152258) Shewanella putrefaciens CN-32 5079940 YP_001184244.1 CDS Sputcn32_2726 NC_009438.1 3152500 3154116 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: she:Shewmr4_1149 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer complement(3152500..3154116) Shewanella putrefaciens CN-32 5079941 YP_001184245.1 CDS Sputcn32_2727 NC_009438.1 3154539 3154907 D KEGG: shm:Shewmr7_1219 hypothetical protein; hypothetical protein 3154539..3154907 Shewanella putrefaciens CN-32 5079942 YP_001184246.1 CDS Sputcn32_2728 NC_009438.1 3154912 3156576 D PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein; PepSY-associated TM helix domain-containing protein 3154912..3156576 Shewanella putrefaciens CN-32 5079943 YP_001184247.1 CDS Sputcn32_2729 NC_009438.1 3156573 3156929 D KEGG: she:Shewmr4_1146 hypothetical protein; hypothetical protein 3156573..3156929 Shewanella putrefaciens CN-32 5079944 YP_001184248.1 CDS Sputcn32_2730 NC_009438.1 3157126 3157563 D PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein 3157126..3157563 Shewanella putrefaciens CN-32 5079945 YP_001184249.1 CDS Sputcn32_2731 NC_009438.1 3157686 3160970 R PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative; peptidase S41 complement(3157686..3160970) Shewanella putrefaciens CN-32 5079946 YP_001184250.1 CDS Sputcn32_2732 NC_009438.1 3161246 3162100 R SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein complement(3161246..3162100) Shewanella putrefaciens CN-32 5079947 YP_001184251.1 CDS Sputcn32_2733 NC_009438.1 3162324 3163607 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(3162324..3163607) Shewanella putrefaciens CN-32 5079948 YP_001184252.1 CDS Sputcn32_2734 NC_009438.1 3163678 3164640 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(3163678..3164640) Shewanella putrefaciens CN-32 5079949 YP_001184253.1 CDS thrA NC_009438.1 3164637 3167105 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(3164637..3167105) Shewanella putrefaciens CN-32 5079950 YP_001184254.1 CDS Sputcn32_2736 NC_009438.1 3167747 3168403 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type 3167747..3168403 Shewanella putrefaciens CN-32 5079951 YP_001184255.1 CDS Sputcn32_2737 NC_009438.1 3168550 3168825 R TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor complement(3168550..3168825) Shewanella putrefaciens CN-32 5079952 YP_001184256.1 CDS Sputcn32_2738 NC_009438.1 3169014 3169463 D PFAM: cytochrome c, class II; KEGG: shm:Shewmr7_1205 cytochrome c, class II; cytochrome c, class II 3169014..3169463 Shewanella putrefaciens CN-32 5079953 YP_001184257.1 CDS Sputcn32_2739 NC_009438.1 3169563 3170255 R PFAM: cytochrome B561; KEGG: she:Shewmr4_1133 cytochrome b561; cytochrome B561 complement(3169563..3170255) Shewanella putrefaciens CN-32 5079954 YP_001184258.1 CDS Sputcn32_2740 NC_009438.1 3170553 3170912 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: shm:Shewmr7_1203 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 3170553..3170912 Shewanella putrefaciens CN-32 5080799 YP_001184259.1 CDS Sputcn32_2741 NC_009438.1 3172126 3172656 D PFAM: DNA polymerase III chi subunit, HolC; KEGG: she:Shewmr4_1131 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC 3172126..3172656 Shewanella putrefaciens CN-32 5080800 YP_001184260.1 CDS valS NC_009438.1 3172672 3175548 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3172672..3175548 Shewanella putrefaciens CN-32 5080801 YP_001184261.1 CDS Sputcn32_2743 NC_009438.1 3177088 3177285 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(3177088..3177285) Shewanella putrefaciens CN-32 5080810 YP_001184262.1 CDS Sputcn32_2744 NC_009438.1 3177404 3178660 R KEGG: shm:Shewmr7_1199 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; aspartate kinase complement(3177404..3178660) Shewanella putrefaciens CN-32 5080811 YP_001184263.1 CDS alaS NC_009438.1 3178670 3181348 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3178670..3181348) Shewanella putrefaciens CN-32 5080812 YP_001184264.1 CDS Sputcn32_2746 NC_009438.1 3181635 3182048 R PFAM: regulatory protein RecX; KEGG: shm:Shewmr7_1197 regulatory protein RecX; regulatory protein RecX complement(3181635..3182048) Shewanella putrefaciens CN-32 5080813 YP_001184265.1 CDS recA NC_009438.1 3182123 3183196 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(3182123..3183196) Shewanella putrefaciens CN-32 5080814 YP_001184266.1 CDS Sputcn32_2748 NC_009438.1 3183580 3186150 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3183580..3186150 Shewanella putrefaciens CN-32 5080815 YP_001184267.1 CDS Sputcn32_2749 NC_009438.1 3186247 3187227 R TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RpoD family RNA polymerase sigma factor complement(3186247..3187227) Shewanella putrefaciens CN-32 5080816 YP_001184268.1 CDS Sputcn32_2750 NC_009438.1 3187309 3188193 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: shm:Shewmr7_1193 peptidase M23B; peptidase M23B complement(3187309..3188193) Shewanella putrefaciens CN-32 5080817 YP_001184269.1 CDS Sputcn32_2751 NC_009438.1 3188286 3188921 R KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(3188286..3188921) Shewanella putrefaciens CN-32 5080818 YP_001184270.1 CDS surE NC_009438.1 3188918 3189667 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3188918..3189667) Shewanella putrefaciens CN-32 5080819 YP_001184271.1 CDS Sputcn32_2753 NC_009438.1 3189664 3190746 R PFAM: tRNA pseudouridine synthase D, TruD; KEGG: shm:Shewmr7_1190 pseudouridylate synthase; pseudouridylate synthase complement(3189664..3190746) Shewanella putrefaciens CN-32 5080820 YP_001184272.1 CDS ispF NC_009438.1 3190768 3191253 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(3190768..3191253) Shewanella putrefaciens CN-32 5080821 YP_001184273.1 CDS ispD NC_009438.1 3191294 3192055 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3191294..3192055) Shewanella putrefaciens CN-32 5080822 YP_001184274.1 CDS Sputcn32_2756 NC_009438.1 3192064 3192420 R PFAM: Septum formation initiator; KEGG: shm:Shewmr7_1187 septum formation initiator; septum formation initiator complement(3192064..3192420) Shewanella putrefaciens CN-32 5080823 YP_001184275.1 CDS eno NC_009438.1 3192463 3193758 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3192463..3193758) Shewanella putrefaciens CN-32 5080824 YP_001184276.1 CDS pyrG NC_009438.1 3193964 3195601 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3193964..3195601) Shewanella putrefaciens CN-32 5080825 YP_001184277.1 CDS mazG NC_009438.1 3195718 3196644 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3195718..3196644) Shewanella putrefaciens CN-32 5080826 YP_001184278.1 CDS Sputcn32_2760 NC_009438.1 3197181 3198293 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 3197181..3198293 Shewanella putrefaciens CN-32 5080827 YP_001184279.1 CDS Sputcn32_2761 NC_009438.1 3198319 3200073 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3198319..3200073 Shewanella putrefaciens CN-32 5080828 YP_001184280.1 CDS Sputcn32_2762 NC_009438.1 3200255 3201319 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3200255..3201319) Shewanella putrefaciens CN-32 5080829 YP_001184281.1 CDS Sputcn32_2763 NC_009438.1 3201375 3202349 R KEGG: cps:CPS_1152 hypothetical protein; hypothetical protein complement(3201375..3202349) Shewanella putrefaciens CN-32 5080830 YP_001184282.1 CDS Sputcn32_2764 NC_009438.1 3203011 3207780 D KEGG: eba:ebA5435 conserved hypothetical protein, probable DNA/RNA helicase; putative DNA/RNA helicase 3203011..3207780 Shewanella putrefaciens CN-32 5080831 YP_001184283.1 CDS Sputcn32_2765 NC_009438.1 3208065 3210272 R KEGG: son:SO3455 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA complement(3208065..3210272) Shewanella putrefaciens CN-32 5080832 YP_001184284.1 CDS rumA NC_009438.1 3210425 3211777 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3210425..3211777) Shewanella putrefaciens CN-32 5080833 YP_001184285.1 CDS Sputcn32_2767 NC_009438.1 3211878 3214679 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3211878..3214679 Shewanella putrefaciens CN-32 5080834 YP_001184286.1 CDS Sputcn32_2768 NC_009438.1 3214654 3215253 D PFAM: protein of unknown function DUF416; KEGG: she:Shewmr4_1108 protein of unknown function DUF416; hypothetical protein 3214654..3215253 Shewanella putrefaciens CN-32 5080835 YP_001184287.1 CDS Sputcn32_2769 NC_009438.1 3215515 3216414 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3215515..3216414) Shewanella putrefaciens CN-32 5080836 YP_001184288.1 CDS Sputcn32_2770 NC_009438.1 3216789 3217751 D PFAM: Auxin Efflux Carrier; KEGG: shm:Shewmr7_1171 auxin efflux carrier; auxin efflux carrier 3216789..3217751 Shewanella putrefaciens CN-32 5080837 YP_001184289.1 CDS Sputcn32_2771 NC_009438.1 3217879 3219537 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: she:Shewmr4_1104 DNA repair protein RecN; recombination and repair protein 3217879..3219537 Shewanella putrefaciens CN-32 5080838 YP_001184290.1 CDS Sputcn32_2772 NC_009438.1 3219691 3220191 R PFAM: phosphatidylglycerophosphatase A; KEGG: shm:Shewmr7_1168 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase complement(3219691..3220191) Shewanella putrefaciens CN-32 5080839 YP_001184291.1 CDS Sputcn32_2773 NC_009438.1 3220201 3221172 R KEGG: she:Shewmr4_1101 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(3220201..3221172) Shewanella putrefaciens CN-32 5080840 YP_001184292.1 CDS nusB NC_009438.1 3221236 3221640 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(3221236..3221640) Shewanella putrefaciens CN-32 5080841 YP_001184293.1 CDS ribH NC_009438.1 3221655 3222131 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(3221655..3222131) Shewanella putrefaciens CN-32 5080748 YP_001184294.1 CDS Sputcn32_2776 NC_009438.1 3222263 3223366 R PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: shm:Shewmr7_1164 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3222263..3223366) Shewanella putrefaciens CN-32 5080749 YP_001184295.1 CDS Sputcn32_2777 NC_009438.1 3223432 3224088 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(3223432..3224088) Shewanella putrefaciens CN-32 5080750 YP_001184296.1 CDS Sputcn32_2778 NC_009438.1 3224100 3225254 R KEGG: son:SO3469 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD complement(3224100..3225254) Shewanella putrefaciens CN-32 5080751 YP_001184297.1 CDS nrdR NC_009438.1 3225362 3225811 R PFAM: ATP-cone domain protein; KEGG: shm:Shewmr7_1161 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR complement(3225362..3225811) Shewanella putrefaciens CN-32 5080752 YP_001184298.1 CDS glyA NC_009438.1 3226011 3227264 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3226011..3227264) Shewanella putrefaciens CN-32 5080753 YP_001184299.1 CDS Sputcn32_2781 NC_009438.1 3227454 3229121 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 3227454..3229121 Shewanella putrefaciens CN-32 5080754 YP_001184300.1 CDS Sputcn32_2782 NC_009438.1 3229273 3230235 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1157 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3229273..3230235) Shewanella putrefaciens CN-32 5080755 YP_001184301.1 CDS Sputcn32_2783 NC_009438.1 3230471 3231394 D PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 3230471..3231394 Shewanella putrefaciens CN-32 5080756 YP_001184302.1 CDS Sputcn32_2784 NC_009438.1 3231548 3232249 D KEGG: shm:Shewmr7_1155 putative protein-disulfide isomerase; putative protein-disulfide isomerase 3231548..3232249 Shewanella putrefaciens CN-32 5080757 YP_001184303.1 CDS Sputcn32_2785 NC_009438.1 3232242 3232739 D KEGG: pfl:PFL_0312 hypothetical protein; ketosteroid isomerase-like protein 3232242..3232739 Shewanella putrefaciens CN-32 5080758 YP_001184304.1 CDS Sputcn32_2786 NC_009438.1 3233043 3234161 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_1150 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3233043..3234161 Shewanella putrefaciens CN-32 5080759 YP_001184305.1 CDS Sputcn32_2787 NC_009438.1 3234161 3237301 D PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_1149 acriflavin resistance protein; acriflavin resistance protein 3234161..3237301 Shewanella putrefaciens CN-32 5080760 YP_001184306.1 CDS Sputcn32_2788 NC_009438.1 3237389 3238558 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1082 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(3237389..3238558) Shewanella putrefaciens CN-32 5080761 YP_001184307.1 CDS Sputcn32_2789 NC_009438.1 3238701 3239477 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 3238701..3239477 Shewanella putrefaciens CN-32 5080762 YP_001184308.1 CDS Sputcn32_2790 NC_009438.1 3239624 3240097 D PFAM: protein of unknown function DUF88; KEGG: sdn:Sden_0372 protein of unknown function DUF88; hypothetical protein 3239624..3240097 Shewanella putrefaciens CN-32 5080763 YP_001184309.1 CDS Sputcn32_2791 NC_009438.1 3240203 3243379 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: she:Shewmr4_1074 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(3240203..3243379) Shewanella putrefaciens CN-32 5080764 YP_001184310.1 CDS Sputcn32_2792 NC_009438.1 3243393 3244631 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: she:Shewmr4_1073 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(3243393..3244631) Shewanella putrefaciens CN-32 5080765 YP_001184311.1 CDS Sputcn32_2793 NC_009438.1 3245048 3245692 D PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_1144 transcriptional regulator, TetR family; TetR family transcriptional regulator 3245048..3245692 Shewanella putrefaciens CN-32 5080766 YP_001184312.1 CDS Sputcn32_2794 NC_009438.1 3245765 3246193 R PFAM: OsmC family protein; KEGG: shm:Shewmr7_1143 OsmC family protein; OsmC family protein complement(3245765..3246193) Shewanella putrefaciens CN-32 5080767 YP_001184313.1 CDS Sputcn32_2795 NC_009438.1 3246425 3247240 D KEGG: she:Shewmr4_1070 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3246425..3247240 Shewanella putrefaciens CN-32 5080768 YP_001184314.1 CDS Sputcn32_2796 NC_009438.1 3247221 3248111 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_1141 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3247221..3248111) Shewanella putrefaciens CN-32 5080769 YP_001184315.1 CDS Sputcn32_2797 NC_009438.1 3248252 3249508 D PFAM: adenylosuccinate synthetase; KEGG: shm:Shewmr7_1140 adenylosuccinate synthase; adenylosuccinate synthase 3248252..3249508 Shewanella putrefaciens CN-32 5080770 YP_001184316.1 CDS Sputcn32_2798 NC_009438.1 3249659 3250639 R PFAM: response regulator receiver; CheW domain protein; KEGG: vpa:VPA0746 chemotaxis protein CheV; putative CheW protein complement(3249659..3250639) Shewanella putrefaciens CN-32 5080771 YP_001184317.1 CDS Sputcn32_2799 NC_009438.1 3250882 3251307 D PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_1139 thioesterase superfamily protein; thioesterase superfamily protein 3250882..3251307 Shewanella putrefaciens CN-32 5080772 YP_001184318.1 CDS Sputcn32_2800 NC_009438.1 3251391 3252887 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: she:Shewmr4_1066 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(3251391..3252887) Shewanella putrefaciens CN-32 5080773 YP_001184319.1 CDS Sputcn32_2801 NC_009438.1 3252922 3253764 R PFAM: HDOD; KEGG: shm:Shewmr7_1137 putative signal transduction protein; putative signal transduction protein complement(3252922..3253764) Shewanella putrefaciens CN-32 5080774 YP_001184320.1 CDS Sputcn32_2802 NC_009438.1 3254067 3255434 D PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 3254067..3255434 Shewanella putrefaciens CN-32 5080775 YP_001184321.1 CDS Sputcn32_2803 NC_009438.1 3255438 3255689 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_1135 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3255438..3255689 Shewanella putrefaciens CN-32 5080776 YP_001184322.1 CDS Sputcn32_2804 NC_009438.1 3255785 3256321 R KEGG: shm:Shewmr7_1134 sterol-binding domain protein; sterol-binding domain-containing protein complement(3255785..3256321) Shewanella putrefaciens CN-32 5080777 YP_001184323.1 CDS Sputcn32_2805 NC_009438.1 3256460 3257461 D PFAM: peptidase U32; KEGG: she:Shewmr4_1061 peptidase U32; peptidase U32 3256460..3257461 Shewanella putrefaciens CN-32 5080778 YP_001184324.1 CDS Sputcn32_2806 NC_009438.1 3257503 3258378 D PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 3257503..3258378 Shewanella putrefaciens CN-32 5080779 YP_001184325.1 CDS Sputcn32_2807 NC_009438.1 3258403 3259083 R KEGG: she:Shewmr4_1059 hypothetical protein; hypothetical protein complement(3258403..3259083) Shewanella putrefaciens CN-32 5080780 YP_001184326.1 CDS Sputcn32_2808 NC_009438.1 3259827 3261158 D PFAM: nucleoside recognition domain protein; KEGG: shm:Shewmr7_1129 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 3259827..3261158 Shewanella putrefaciens CN-32 5080781 YP_001184327.1 CDS Sputcn32_2809 NC_009438.1 3261786 3262853 D PFAM: metallophosphoesterase; KEGG: shm:Shewmr7_1122 metallophosphoesterase; metallophosphoesterase 3261786..3262853 Shewanella putrefaciens CN-32 5080782 YP_001184328.1 CDS Sputcn32_2810 NC_009438.1 3262843 3264735 D PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_1121 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 3262843..3264735 Shewanella putrefaciens CN-32 5080783 YP_001184329.1 CDS Sputcn32_2811 NC_009438.1 3264860 3265291 D PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_1120 CBS domain containing protein; hypothetical protein 3264860..3265291 Shewanella putrefaciens CN-32 5080784 YP_001184330.1 CDS Sputcn32_2812 NC_009438.1 3265376 3266728 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease complement(3265376..3266728) Shewanella putrefaciens CN-32 5080785 YP_001184331.1 CDS Sputcn32_2813 NC_009438.1 3267318 3267689 D PFAM: type IV pilus assembly PilZ; KEGG: shm:Shewmr7_1111 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3267318..3267689 Shewanella putrefaciens CN-32 5080786 YP_001184332.1 CDS Sputcn32_2814 NC_009438.1 3267749 3269113 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3267749..3269113) Shewanella putrefaciens CN-32 5080787 YP_001184333.1 CDS Sputcn32_2815 NC_009438.1 3269270 3271657 D PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3269270..3271657 Shewanella putrefaciens CN-32 5080788 YP_001184334.1 CDS Sputcn32_2816 NC_009438.1 3271670 3272647 R KEGG: shm:Shewmr7_1108 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein complement(3271670..3272647) Shewanella putrefaciens CN-32 5080789 YP_001184335.1 CDS Sputcn32_2817 NC_009438.1 3272763 3273758 R KEGG: she:Shewmr4_1042 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB complement(3272763..3273758) Shewanella putrefaciens CN-32 5080790 YP_001184336.1 CDS Sputcn32_2818 NC_009438.1 3273823 3274854 D KEGG: son:SO1222 membrane protein; membrane protein 3273823..3274854 Shewanella putrefaciens CN-32 5080791 YP_001184337.1 CDS deoD NC_009438.1 3275041 3275751 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(3275041..3275751) Shewanella putrefaciens CN-32 5080792 YP_001184338.1 CDS Sputcn32_2820 NC_009438.1 3275843 3277057 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(3275843..3277057) Shewanella putrefaciens CN-32 5080793 YP_001184339.1 CDS deoA NC_009438.1 3277067 3278398 R Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase complement(3277067..3278398) Shewanella putrefaciens CN-32 5080794 YP_001184340.1 CDS Sputcn32_2822 NC_009438.1 3278583 3279353 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(3278583..3279353) Shewanella putrefaciens CN-32 5080795 YP_001184341.1 CDS Sputcn32_2823 NC_009438.1 3279760 3280599 R PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: shm:Shewmr7_1101 nucleoside-specific channel-forming protein, Tsx; nucleoside-specific channel-forming protein, Tsx complement(3279760..3280599) Shewanella putrefaciens CN-32 5080796 YP_001184342.1 CDS Sputcn32_2824 NC_009438.1 3280959 3282218 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: shm:Shewmr7_1100 nucleoside transporter; nucleoside transporter complement(3280959..3282218) Shewanella putrefaciens CN-32 5080797 YP_001184343.1 CDS Sputcn32_2825 NC_009438.1 3282395 3283159 R PFAM: TatD-related deoxyribonuclease; KEGG: she:Shewmr4_1034 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease complement(3282395..3283159) Shewanella putrefaciens CN-32 5080798 YP_001184344.1 CDS Sputcn32_2826 NC_009438.1 3283170 3283355 R KEGG: sfr:Sfri_0998 hypothetical protein; hypothetical protein complement(3283170..3283355) Shewanella putrefaciens CN-32 5078658 YP_001184345.1 CDS prfC NC_009438.1 3283438 3285018 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(3283438..3285018) Shewanella putrefaciens CN-32 5078659 YP_001184346.1 CDS Sputcn32_2828 NC_009438.1 3285117 3286022 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3285117..3286022) Shewanella putrefaciens CN-32 5078660 YP_001184347.1 CDS Sputcn32_2829 NC_009438.1 3286214 3288313 R KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(3286214..3288313) Shewanella putrefaciens CN-32 5078661 YP_001184348.1 CDS Sputcn32_2830 NC_009438.1 3288509 3290557 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_1095 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3288509..3290557 Shewanella putrefaciens CN-32 5078662 YP_001184349.1 CDS rpsO NC_009438.1 3290634 3290903 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3290634..3290903) Shewanella putrefaciens CN-32 5078663 YP_001184350.1 CDS truB NC_009438.1 3291032 3291988 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3291032..3291988) Shewanella putrefaciens CN-32 5078664 YP_001184351.1 CDS rbfA NC_009438.1 3291988 3292437 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3291988..3292437) Shewanella putrefaciens CN-32 5078665 YP_001184352.1 CDS infB NC_009438.1 3292501 3295143 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3292501..3295143) Shewanella putrefaciens CN-32 5078666 YP_001184353.1 CDS nusA NC_009438.1 3295169 3296668 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3295169..3296668) Shewanella putrefaciens CN-32 5078667 YP_001184354.1 CDS Sputcn32_2836 NC_009438.1 3296698 3297153 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3296698..3297153) Shewanella putrefaciens CN-32 5078668 YP_001184355.1 CDS secG NC_009438.1 3297585 3297920 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(3297585..3297920) Shewanella putrefaciens CN-32 5078671 YP_001184356.1 CDS Sputcn32_2838 NC_009438.1 3297922 3298704 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3297922..3298704) Shewanella putrefaciens CN-32 5078672 YP_001184357.1 CDS glmM NC_009438.1 3298899 3300236 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3298899..3300236) Shewanella putrefaciens CN-32 5078673 YP_001184358.1 CDS Sputcn32_2840 NC_009438.1 3300317 3301150 R KEGG: shm:Shewmr7_1085 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(3300317..3301150) Shewanella putrefaciens CN-32 5078674 YP_001184359.1 CDS Sputcn32_2841 NC_009438.1 3301362 3303335 R KEGG: she:Shewmr4_1019 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(3301362..3303335) Shewanella putrefaciens CN-32 5078675 YP_001184360.1 CDS rrmJ NC_009438.1 3303365 3303994 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J complement(3303365..3303994) Shewanella putrefaciens CN-32 5078676 YP_001184361.1 CDS Sputcn32_2843 NC_009438.1 3304085 3304384 D PFAM: protein of unknown function UPF0044; KEGG: shm:Shewmr7_1082 protein of unknown function UPF0044; hypothetical protein 3304085..3304384 Shewanella putrefaciens CN-32 5078677 YP_001184362.1 CDS secF NC_009438.1 3304463 3305359 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3304463..3305359) Shewanella putrefaciens CN-32 5078678 YP_001184363.1 CDS secD NC_009438.1 3305362 3307176 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3305362..3307176) Shewanella putrefaciens CN-32 5078679 YP_001184364.1 CDS Sputcn32_2846 NC_009438.1 3307402 3307947 R KEGG: son:SO1192 hypothetical protein; hypothetical protein complement(3307402..3307947) Shewanella putrefaciens CN-32 5078680 YP_001184365.1 CDS Sputcn32_2847 NC_009438.1 3308301 3308777 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA complement(3308301..3308777) Shewanella putrefaciens CN-32 5078681 YP_001184366.1 CDS Sputcn32_2848 NC_009438.1 3309077 3309895 R KEGG: shm:Shewmr7_1077 hypothetical protein; hypothetical protein complement(3309077..3309895) Shewanella putrefaciens CN-32 5078682 YP_001184367.1 CDS Sputcn32_2849 NC_009438.1 3309933 3310445 R KEGG: shm:Shewmr7_1076 lysozyme; hypothetical protein complement(3309933..3310445) Shewanella putrefaciens CN-32 5078683 YP_001184368.1 CDS Sputcn32_2850 NC_009438.1 3310461 3311099 R PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO1188 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(3310461..3311099) Shewanella putrefaciens CN-32 5078684 YP_001184369.1 CDS Sputcn32_2851 NC_009438.1 3311511 3312161 D KEGG: son:SO1187 hypothetical protein; hypothetical protein 3311511..3312161 Shewanella putrefaciens CN-32 5078685 YP_001184370.1 CDS Sputcn32_2852 NC_009438.1 3313398 3314489 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3313398..3314489) Shewanella putrefaciens CN-32 5078693 YP_001184371.1 CDS Sputcn32_2853 NC_009438.1 3314624 3315211 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3314624..3315211) Shewanella putrefaciens CN-32 5078694 YP_001184372.1 CDS Sputcn32_2854 NC_009438.1 3315356 3316597 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: shm:Shewmr7_1071 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3315356..3316597) Shewanella putrefaciens CN-32 5078695 YP_001184373.1 CDS Sputcn32_2855 NC_009438.1 3316958 3318382 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3316958..3318382 Shewanella putrefaciens CN-32 5078696 YP_001184374.1 CDS Sputcn32_2856 NC_009438.1 3318629 3319678 D PFAM: PhoH family protein; KEGG: she:Shewmr4_1003 PhoH family protein; PhoH family protein 3318629..3319678 Shewanella putrefaciens CN-32 5078697 YP_001184375.1 CDS Sputcn32_2857 NC_009438.1 3319668 3320129 D PFAM: protein of unknown function UPF0054; KEGG: she:Shewmr4_1002 protein of unknown function UPF0054; putative metalloprotease 3319668..3320129 Shewanella putrefaciens CN-32 5078698 YP_001184376.1 CDS Sputcn32_2858 NC_009438.1 3320169 3321044 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: shm:Shewmr7_1066 CBS domain containing protein; hypothetical protein 3320169..3321044 Shewanella putrefaciens CN-32 5078699 YP_001184377.1 CDS lnt NC_009438.1 3321087 3322643 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 3321087..3322643 Shewanella putrefaciens CN-32 5078700 YP_001184378.1 CDS Sputcn32_2860 NC_009438.1 3322654 3323157 D KEGG: shm:Shewmr7_1064 methylation site containing protein; methylation site containing protein 3322654..3323157 Shewanella putrefaciens CN-32 5078607 YP_001184379.1 CDS Sputcn32_2861 NC_009438.1 3323272 3323931 D KEGG: sde:Sde_2848 histidine kinase; histidine kinase 3323272..3323931 Shewanella putrefaciens CN-32 5078608 YP_001184380.1 CDS Sputcn32_2862 NC_009438.1 3324036 3324536 R PFAM: protein of unknown function DUF1451; KEGG: shm:Shewmr7_1063 protein of unknown function DUF1451; hypothetical protein complement(3324036..3324536) Shewanella putrefaciens CN-32 5078609 YP_001184381.1 CDS leuS NC_009438.1 3324659 3327238 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3324659..3327238 Shewanella putrefaciens CN-32 5078610 YP_001184382.1 CDS Sputcn32_2864 NC_009438.1 3327259 3327753 D PFAM: Rare lipoprotein B; KEGG: shm:Shewmr7_1061 rare lipoprotein B; rare lipoprotein B 3327259..3327753 Shewanella putrefaciens CN-32 5078611 YP_001184383.1 CDS Sputcn32_2865 NC_009438.1 3327806 3328837 D KEGG: son:SO1172 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 3327806..3328837 Shewanella putrefaciens CN-32 5078612 YP_001184384.1 CDS Sputcn32_2866 NC_009438.1 3328847 3329494 D KEGG: shm:Shewmr7_1059 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3328847..3329494 Shewanella putrefaciens CN-32 5078613 YP_001184385.1 CDS Sputcn32_2867 NC_009438.1 3329602 3329931 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: shm:Shewmr7_1058 iojap-like protein; iojap family protein 3329602..3329931 Shewanella putrefaciens CN-32 5078614 YP_001184386.1 CDS Sputcn32_2868 NC_009438.1 3329931 3330401 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3329931..3330401 Shewanella putrefaciens CN-32 5078615 YP_001184387.1 CDS Sputcn32_2869 NC_009438.1 3330463 3332319 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: shm:Shewmr7_1056 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 3330463..3332319 Shewanella putrefaciens CN-32 5078616 YP_001184388.1 CDS Sputcn32_2870 NC_009438.1 3332316 3333422 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: shm:Shewmr7_1055 rod shape-determining protein RodA; rod shape-determining protein RodA 3332316..3333422 Shewanella putrefaciens CN-32 5078617 YP_001184389.1 CDS Sputcn32_2871 NC_009438.1 3333439 3334503 D TIGRFAM: lytic murein transglycosylase B; KEGG: shm:Shewmr7_1054 lytic murein transglycosylase B; lytic murein transglycosylase B 3333439..3334503 Shewanella putrefaciens CN-32 5078618 YP_001184390.1 CDS Sputcn32_2872 NC_009438.1 3334487 3335332 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: she:Shewmr4_0988 rare lipoprotein A; rare lipoprotein A 3334487..3335332 Shewanella putrefaciens CN-32 5078619 YP_001184391.1 CDS Sputcn32_2873 NC_009438.1 3335478 3336653 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 3335478..3336653 Shewanella putrefaciens CN-32 5078620 YP_001184392.1 CDS Sputcn32_2874 NC_009438.1 3336773 3337039 D PFAM: protein of unknown function DUF493; KEGG: shm:Shewmr7_1051 protein of unknown function DUF493; hypothetical protein 3336773..3337039 Shewanella putrefaciens CN-32 5078621 YP_001184393.1 CDS lipB NC_009438.1 3337127 3337786 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 3337127..3337786 Shewanella putrefaciens CN-32 5078622 YP_001184394.1 CDS Sputcn32_2876 NC_009438.1 3337783 3338748 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3337783..3338748 Shewanella putrefaciens CN-32 5078623 YP_001184395.1 CDS Sputcn32_2877 NC_009438.1 3338818 3339315 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(3338818..3339315) Shewanella putrefaciens CN-32 5078624 YP_001184396.1 CDS Sputcn32_2878 NC_009438.1 3339339 3339689 R KEGG: shm:Shewmr7_1047 hypothetical protein; hypothetical protein complement(3339339..3339689) Shewanella putrefaciens CN-32 5078625 YP_001184397.1 CDS Sputcn32_2879 NC_009438.1 3339897 3340364 D PFAM: Ferritin, Dps family protein; KEGG: shm:Shewmr7_1046 ferritin, Dps family protein; Ferritin, Dps family protein 3339897..3340364 Shewanella putrefaciens CN-32 5078626 YP_001184398.1 CDS Sputcn32_2880 NC_009438.1 3340459 3341715 R PFAM: protein of unknown function DUF1624; KEGG: she:Shewmr4_0980 hypothetical protein; hypothetical protein complement(3340459..3341715) Shewanella putrefaciens CN-32 5078627 YP_001184399.1 CDS Sputcn32_2881 NC_009438.1 3341705 3343849 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0979 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(3341705..3343849) Shewanella putrefaciens CN-32 5078628 YP_001184400.1 CDS Sputcn32_2882 NC_009438.1 3343935 3344225 R KEGG: shm:Shewmr7_1043 hypothetical protein; hypothetical protein complement(3343935..3344225) Shewanella putrefaciens CN-32 5078629 YP_001184401.1 CDS Sputcn32_2883 NC_009438.1 3344428 3345048 D KEGG: son:SOA0063 ISSod8, transposase; ISSod8, transposase 3344428..3345048 Shewanella putrefaciens CN-32 5078630 YP_001184402.1 CDS Sputcn32_2884 NC_009438.1 3345183 3345602 R KEGG: ddi:DDB0219841 hypothetical protein; hypothetical protein complement(3345183..3345602) Shewanella putrefaciens CN-32 5078631 YP_001184403.1 CDS Sputcn32_2886 NC_009438.1 3346726 3347073 D hypothetical protein 3346726..3347073 Shewanella putrefaciens CN-32 5078633 YP_001184404.1 CDS Sputcn32_2888 NC_009438.1 3347632 3348921 R PFAM: beta-lactamase domain protein; KEGG: dvu:DVU1700 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(3347632..3348921) Shewanella putrefaciens CN-32 5078635 YP_001184405.1 CDS Sputcn32_2889 NC_009438.1 3348921 3349853 R KEGG: sus:Acid_0787 conserved hypothetical protein; hypothetical protein complement(3348921..3349853) Shewanella putrefaciens CN-32 5078636 YP_001184406.1 CDS Sputcn32_2890 NC_009438.1 3349859 3350524 R PFAM: metallophosphoesterase; KEGG: ppr:PBPRA0880 hypothetical protein; metallophosphoesterase complement(3349859..3350524) Shewanella putrefaciens CN-32 5078637 YP_001184407.1 CDS Sputcn32_2891 NC_009438.1 3350566 3351168 R KEGG: dps:DP0404 hypothetical protein; hypothetical protein complement(3350566..3351168) Shewanella putrefaciens CN-32 5078638 YP_001184408.1 CDS Sputcn32_2892 NC_009438.1 3351518 3352093 D hypothetical protein 3351518..3352093 Shewanella putrefaciens CN-32 5078639 YP_001184409.1 CDS Sputcn32_2893 NC_009438.1 3352083 3354299 D hypothetical protein 3352083..3354299 Shewanella putrefaciens CN-32 5078640 YP_001184410.1 CDS Sputcn32_2894 NC_009438.1 3354292 3357321 D PFAM: phage integrase family protein; KEGG: pcr:Pcryo_0912 phage integrase; phage integrase family protein 3354292..3357321 Shewanella putrefaciens CN-32 5078641 YP_001184411.1 CDS Sputcn32_2895 NC_009438.1 3357533 3358846 D KEGG: vvy:VV0261 hypothetical protein; hypothetical protein 3357533..3358846 Shewanella putrefaciens CN-32 5078642 YP_001184412.1 CDS Sputcn32_2896 NC_009438.1 3359224 3359598 R KEGG: abo:ABO_1505 hypothetical protein; hypothetical protein complement(3359224..3359598) Shewanella putrefaciens CN-32 5078643 YP_001184413.1 CDS Sputcn32_2897 NC_009438.1 3360109 3361269 R PFAM: phage integrase family protein; KEGG: pcr:Pcryo_0961 phage integrase; phage integrase family protein complement(3360109..3361269) Shewanella putrefaciens CN-32 5078644 YP_001184414.1 CDS Sputcn32_2898 NC_009438.1 3361278 3361484 R KEGG: pcr:Pcryo_0962 hypothetical protein; hypothetical protein complement(3361278..3361484) Shewanella putrefaciens CN-32 5078645 YP_001184415.1 CDS Sputcn32_2899 NC_009438.1 3361613 3361819 D SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0373 transcriptional regulator, Cro/CI family; helix-turn-helix domain-containing protein 3361613..3361819 Shewanella putrefaciens CN-32 5078646 YP_001184416.1 CDS Sputcn32_2900 NC_009438.1 3362021 3363319 D PFAM: phage integrase family protein; KEGG: sdn:Sden_0317 phage integrase; phage integrase family protein 3362021..3363319 Shewanella putrefaciens CN-32 5078647 YP_001184417.1 CDS Sputcn32_2901 NC_009438.1 3363329 3364162 D hypothetical protein 3363329..3364162 Shewanella putrefaciens CN-32 5078648 YP_001184418.1 CDS Sputcn32_2902 NC_009438.1 3364278 3364487 D PFAM: Prophage CP4-57 regulatory; KEGG: cps:CPS_2017 hypothetical protein; phage transcriptional regulator AlpA 3364278..3364487 Shewanella putrefaciens CN-32 5078649 YP_001184419.1 CDS Sputcn32_2903 NC_009438.1 3364910 3365845 D KEGG: son:SO4260 hypothetical protein; hypothetical protein 3364910..3365845 Shewanella putrefaciens CN-32 5078650 YP_001184420.1 CDS Sputcn32_2904 NC_009438.1 3366023 3366676 D KEGG: son:SO4261 hypothetical protein; hypothetical protein 3366023..3366676 Shewanella putrefaciens CN-32 5078651 YP_001184421.1 CDS Sputcn32_2905 NC_009438.1 3366839 3367222 R hypothetical protein complement(3366839..3367222) Shewanella putrefaciens CN-32 5078652 YP_001184422.1 CDS Sputcn32_2906 NC_009438.1 3367382 3367798 D KEGG: eca:ECA0367 putative DNA-binding protein; putative DNA-binding protein 3367382..3367798 Shewanella putrefaciens CN-32 5078653 YP_001184423.1 CDS Sputcn32_2907 NC_009438.1 3367890 3368189 D PFAM: protein of unknown function UPF0150; KEGG: plu:plu2506 hypothetical protein; hypothetical protein 3367890..3368189 Shewanella putrefaciens CN-32 5078654 YP_001184424.1 CDS Sputcn32_2908 NC_009438.1 3368533 3370104 D PFAM: N-6 DNA methylase; KEGG: bxe:Bxe_A0224 type I restriction-modification system, M subunit; N-6 DNA methylase 3368533..3370104 Shewanella putrefaciens CN-32 5078655 YP_001184425.1 CDS Sputcn32_2909 NC_009438.1 3370094 3371416 D PFAM: restriction modification system DNA specificity domain; KEGG: pol:Bpro_1941 restriction endonuclease S subunits-like; restriction modification system DNA specificity subunit 3370094..3371416 Shewanella putrefaciens CN-32 5078656 YP_001184426.1 CDS Sputcn32_2910 NC_009438.1 3371431 3374133 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: psb:Psyr_3725 ATPas; ATPase 3371431..3374133 Shewanella putrefaciens CN-32 5078657 YP_001184427.1 CDS Sputcn32_2911 NC_009438.1 3374133 3375440 D KEGG: psb:Psyr_3724 hypothetical protein; hypothetical protein 3374133..3375440 Shewanella putrefaciens CN-32 5078137 YP_001184428.1 CDS Sputcn32_2912 NC_009438.1 3375839 3378976 D KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 3375839..3378976 Shewanella putrefaciens CN-32 5078138 YP_001184429.1 CDS Sputcn32_2913 NC_009438.1 3379039 3379461 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(3379039..3379461) Shewanella putrefaciens CN-32 5078139 YP_001184430.1 CDS Sputcn32_2914 NC_009438.1 3379625 3380281 D KEGG: neu:NE2436 hypothetical protein; hypothetical protein 3379625..3380281 Shewanella putrefaciens CN-32 5078140 YP_001184431.1 CDS Sputcn32_2915 NC_009438.1 3380465 3380923 R KEGG: vvu:VV10402 predicted transcriptional regulator; XRE family transcriptional regulator complement(3380465..3380923) Shewanella putrefaciens CN-32 5078141 YP_001184432.1 CDS Sputcn32_2916 NC_009438.1 3380920 3382266 R PFAM: HipA domain protein; KEGG: vvy:VV0798 hypothetical protein; HipA domain-containing protein complement(3380920..3382266) Shewanella putrefaciens CN-32 5078142 YP_001184433.1 CDS Sputcn32_2917 NC_009438.1 3383263 3383625 D KEGG: she:Shewmr4_3199 hypothetical protein; hypothetical protein 3383263..3383625 Shewanella putrefaciens CN-32 5078143 YP_001184434.1 CDS Sputcn32_2918 NC_009438.1 3383654 3384571 R PFAM: transposase, IS4 family protein; KEGG: shm:Shewmr7_3098 transposase, IS4 family protein; transposase, IS4 family protein complement(3383654..3384571) Shewanella putrefaciens CN-32 5078144 YP_001184435.1 CDS Sputcn32_2919 NC_009438.1 3384696 3385229 R KEGG: she:Shewmr4_1704 hypothetical protein; hypothetical protein complement(3384696..3385229) Shewanella putrefaciens CN-32 5078145 YP_001184436.1 CDS Sputcn32_2920 NC_009438.1 3385240 3386826 R SMART: von Willebrand factor, type A; KEGG: she:Shewmr4_1703 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein complement(3385240..3386826) Shewanella putrefaciens CN-32 5078146 YP_001184437.1 CDS Sputcn32_2921 NC_009438.1 3386819 3388288 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: she:Shewmr4_1702 ATPase associated with various cellular activities, AAA_5; ATPase complement(3386819..3388288) Shewanella putrefaciens CN-32 5078147 YP_001184438.1 CDS Sputcn32_2922 NC_009438.1 3388445 3389920 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: she:Shewmr4_1701 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(3388445..3389920) Shewanella putrefaciens CN-32 5078148 YP_001184439.1 CDS Sputcn32_2923 NC_009438.1 3390066 3390290 R hypothetical protein complement(3390066..3390290) Shewanella putrefaciens CN-32 5078149 YP_001184440.1 CDS Sputcn32_2925 NC_009438.1 3390858 3392615 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pat:Patl_4103 methyltransferase type 12; type 11 methyltransferase complement(3390858..3392615) Shewanella putrefaciens CN-32 5078151 YP_001184441.1 CDS Sputcn32_2927 NC_009438.1 3394731 3395069 D PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA1441 hypothetical protein; SecC motif-containing protein 3394731..3395069 Shewanella putrefaciens CN-32 5078154 YP_001184442.1 CDS Sputcn32_2928 NC_009438.1 3395175 3396104 R KEGG: shm:Shewmr7_1015 hypothetical protein; hypothetical protein complement(3395175..3396104) Shewanella putrefaciens CN-32 5078155 YP_001184443.1 CDS Sputcn32_2929 NC_009438.1 3396311 3397207 R PFAM: 3'-5' exonuclease; KEGG: shm:Shewmr7_1014 3'-5' exonuclease; 3'-5' exonuclease complement(3396311..3397207) Shewanella putrefaciens CN-32 5078156 YP_001184444.1 CDS Sputcn32_2930 NC_009438.1 3397289 3398221 R PFAM: protein of unknown function DUF808; KEGG: she:Shewmr4_0975 protein of unknown function DUF808; hypothetical protein complement(3397289..3398221) Shewanella putrefaciens CN-32 5078157 YP_001184445.1 CDS Sputcn32_2931 NC_009438.1 3398452 3399114 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3398452..3399114 Shewanella putrefaciens CN-32 5078158 YP_001184446.1 CDS Sputcn32_2932 NC_009438.1 3399297 3400487 R SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; PUA domain-containing protein complement(3399297..3400487) Shewanella putrefaciens CN-32 5078159 YP_001184447.1 CDS Sputcn32_2933 NC_009438.1 3400768 3401958 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_0969 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(3400768..3401958) Shewanella putrefaciens CN-32 5078160 YP_001184448.1 CDS Sputcn32_2934 NC_009438.1 3402742 3403455 D KEGG: son:SO1146 hypothetical protein; hypothetical protein 3402742..3403455 Shewanella putrefaciens CN-32 5078161 YP_001184449.1 CDS Sputcn32_2935 NC_009438.1 3403475 3404848 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1145 magnesium transporter; magnesium transporter 3403475..3404848 Shewanella putrefaciens CN-32 5078162 YP_001184450.1 CDS Sputcn32_2936 NC_009438.1 3405095 3406183 D PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3405095..3406183 Shewanella putrefaciens CN-32 5078163 YP_001184451.1 CDS Sputcn32_2937 NC_009438.1 3406380 3407153 D KEGG: son:SO1143 hypothetical protein; hypothetical protein 3406380..3407153 Shewanella putrefaciens CN-32 5078164 YP_001184452.1 CDS Sputcn32_2938 NC_009438.1 3407214 3407924 R PFAM: pseudouridine synthase; KEGG: sfr:Sfri_3001 pseudouridine synthase; pseudouridine synthase complement(3407214..3407924) Shewanella putrefaciens CN-32 5078165 YP_001184453.1 CDS carB NC_009438.1 3408068 3411292 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(3408068..3411292) Shewanella putrefaciens CN-32 5078166 YP_001184454.1 CDS Sputcn32_2940 NC_009438.1 3411320 3412480 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(3411320..3412480) Shewanella putrefaciens CN-32 5078167 YP_001184455.1 CDS Sputcn32_2941 NC_009438.1 3412654 3413466 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(3412654..3413466) Shewanella putrefaciens CN-32 5078168 YP_001184456.1 CDS Sputcn32_2942 NC_009438.1 3413539 3414156 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0963 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(3413539..3414156) Shewanella putrefaciens CN-32 5078169 YP_001184457.1 CDS Sputcn32_2943 NC_009438.1 3414285 3415094 R PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p complement(3414285..3415094) Shewanella putrefaciens CN-32 5078170 YP_001184458.1 CDS Sputcn32_2944 NC_009438.1 3415194 3416510 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_0998 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3415194..3416510) Shewanella putrefaciens CN-32 5078171 YP_001184459.1 CDS gldA NC_009438.1 3416979 3418097 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3416979..3418097 Shewanella putrefaciens CN-32 5078172 YP_001184460.1 CDS Sputcn32_2946 NC_009438.1 3418315 3419706 D PFAM: aldehyde dehydrogenase; KEGG: ppu:PP_2488 succinic-semialdehyde dehydrogenase, putative; aldehyde dehydrogenase 3418315..3419706 Shewanella putrefaciens CN-32 5078173 YP_001184461.1 CDS Sputcn32_2947 NC_009438.1 3419769 3420596 R PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein complement(3419769..3420596) Shewanella putrefaciens CN-32 5078174 YP_001184462.1 CDS Sputcn32_2948 NC_009438.1 3420613 3421650 R KEGG: shm:Shewmr7_3175 hypothetical protein; hypothetical protein complement(3420613..3421650) Shewanella putrefaciens CN-32 5078175 YP_001184463.1 CDS Sputcn32_2949 NC_009438.1 3422601 3423032 R PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_04843 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 complement(3422601..3423032) Shewanella putrefaciens CN-32 5078176 YP_001184464.1 CDS Sputcn32_2950 NC_009438.1 3423173 3423742 R hypothetical protein complement(3423173..3423742) Shewanella putrefaciens CN-32 5078177 YP_001184465.1 CDS Sputcn32_2951 NC_009438.1 3423860 3424303 R hypothetical protein complement(3423860..3424303) Shewanella putrefaciens CN-32 5078178 YP_001184466.1 CDS Sputcn32_2952 NC_009438.1 3424379 3424741 R KEGG: vvy:VV1846 hypothetical protein; hypothetical protein complement(3424379..3424741) Shewanella putrefaciens CN-32 5078179 YP_001184467.1 CDS Sputcn32_2953 NC_009438.1 3424826 3425191 R KEGG: plu:plu1148 hypothetical protein; hypothetical protein complement(3424826..3425191) Shewanella putrefaciens CN-32 5078180 YP_001184468.1 CDS Sputcn32_2954 NC_009438.1 3425851 3426549 R KEGG: son:SOA0150 hypothetical protein; hypothetical protein complement(3425851..3426549) Shewanella putrefaciens CN-32 5078181 YP_001184469.1 CDS Sputcn32_2955 NC_009438.1 3427039 3427500 R hypothetical protein complement(3427039..3427500) Shewanella putrefaciens CN-32 5078182 YP_001184470.1 CDS Sputcn32_2956 NC_009438.1 3428041 3428268 R KEGG: son:SO0729 hypothetical protein; hypothetical protein complement(3428041..3428268) Shewanella putrefaciens CN-32 5078183 YP_001184471.1 CDS Sputcn32_2957 NC_009438.1 3428433 3429056 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(3428433..3429056) Shewanella putrefaciens CN-32 5078184 YP_001184472.1 CDS Sputcn32_2958 NC_009438.1 3429101 3430705 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(3429101..3430705) Shewanella putrefaciens CN-32 5078185 YP_001184473.1 CDS Sputcn32_2959 NC_009438.1 3430792 3431403 R PFAM: cobalbumin biosynthesis enzyme; KEGG: shm:Shewmr7_3178 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein complement(3430792..3431403) Shewanella putrefaciens CN-32 5078186 YP_001184474.1 CDS cobS NC_009438.1 3431400 3432188 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(3431400..3432188) Shewanella putrefaciens CN-32 5078187 YP_001184475.1 CDS cobT NC_009438.1 3432296 3433348 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(3432296..3433348) Shewanella putrefaciens CN-32 5079856 YP_001184476.1 CDS Sputcn32_2962 NC_009438.1 3433427 3434554 R PFAM: transport system permease protein; KEGG: she:Shewmr4_0841 transport system permease protein; transport system permease complement(3433427..3434554) Shewanella putrefaciens CN-32 5079857 YP_001184477.1 CDS Sputcn32_2963 NC_009438.1 3434554 3435435 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter-like protein complement(3434554..3435435) Shewanella putrefaciens CN-32 5079858 YP_001184478.1 CDS Sputcn32_2964 NC_009438.1 3435955 3436680 R PFAM: Phosphoglycerate mutase; KEGG: she:Shewmr4_0839 phosphoglycerate mutase; phosphoglycerate mutase complement(3435955..3436680) Shewanella putrefaciens CN-32 5079859 YP_001184479.1 CDS metH NC_009438.1 3436965 3440699 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 3436965..3440699 Shewanella putrefaciens CN-32 5079860 YP_001184480.1 CDS Sputcn32_2966 NC_009438.1 3441234 3441644 R hypothetical protein complement(3441234..3441644) Shewanella putrefaciens CN-32 5079861 YP_001184481.1 CDS Sputcn32_2967 NC_009438.1 3441712 3442143 R hypothetical protein complement(3441712..3442143) Shewanella putrefaciens CN-32 5079862 YP_001184482.1 CDS Sputcn32_2968 NC_009438.1 3442188 3443729 R KEGG: mes:Meso_0922 hypothetical protein; hypothetical protein complement(3442188..3443729) Shewanella putrefaciens CN-32 5079863 YP_001184483.1 CDS Sputcn32_2969 NC_009438.1 3444558 3445880 D KEGG: pfo:Pfl_4766 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 3444558..3445880 Shewanella putrefaciens CN-32 5079864 YP_001184484.1 CDS Sputcn32_2970 NC_009438.1 3446004 3447134 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(3446004..3447134) Shewanella putrefaciens CN-32 5079865 YP_001184485.1 CDS dnaK NC_009438.1 3447265 3449184 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(3447265..3449184) Shewanella putrefaciens CN-32 5079866 YP_001184486.1 CDS Sputcn32_2972 NC_009438.1 3449474 3450409 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: she:Shewmr4_0956 protein of unknown function DUF6, transmembrane; hypothetical protein 3449474..3450409 Shewanella putrefaciens CN-32 5079867 YP_001184487.1 CDS Sputcn32_2973 NC_009438.1 3450548 3451024 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011; ybaK/ebsC protein 3450548..3451024 Shewanella putrefaciens CN-32 5079868 YP_001184488.1 CDS Sputcn32_2974 NC_009438.1 3451152 3451454 D KEGG: she:Shewmr4_0954 hypothetical protein; hypothetical protein 3451152..3451454 Shewanella putrefaciens CN-32 5079869 YP_001184489.1 CDS proA NC_009438.1 3451539 3452807 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3451539..3452807) Shewanella putrefaciens CN-32 5079870 YP_001184490.1 CDS Sputcn32_2976 NC_009438.1 3452829 3453947 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3452829..3453947) Shewanella putrefaciens CN-32 5079871 YP_001184491.1 CDS Sputcn32_2977 NC_009438.1 3454149 3455438 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shm:Shewmr7_0989 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(3454149..3455438) Shewanella putrefaciens CN-32 5079872 YP_001184492.1 CDS Sputcn32_2978 NC_009438.1 3455614 3455949 R KEGG: son:SO3679 hypothetical protein; hypothetical protein complement(3455614..3455949) Shewanella putrefaciens CN-32 5079873 YP_001184493.1 CDS Sputcn32_2979 NC_009438.1 3456295 3457152 D KEGG: she:Shewmr4_0876 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3456295..3457152 Shewanella putrefaciens CN-32 5079874 YP_001184494.1 CDS Sputcn32_2980 NC_009438.1 3457171 3457602 R PFAM: UspA domain protein; KEGG: shm:Shewmr7_3148 UspA domain protein; UspA domain-containing protein complement(3457171..3457602) Shewanella putrefaciens CN-32 5079875 YP_001184495.1 CDS Sputcn32_2981 NC_009438.1 3457666 3458049 R KEGG: she:Shewmr4_0873 hypothetical protein; hypothetical protein complement(3457666..3458049) Shewanella putrefaciens CN-32 5079876 YP_001184496.1 CDS Sputcn32_2982 NC_009438.1 3458272 3459696 D PFAM: aldehyde dehydrogenase; KEGG: shm:Shewmr7_3150 aldehyde dehydrogenase; aldehyde dehydrogenase 3458272..3459696 Shewanella putrefaciens CN-32 5079877 YP_001184497.1 CDS Sputcn32_2983 NC_009438.1 3459747 3460319 D PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_0871 transcriptional regulator, TetR family; TetR family transcriptional regulator 3459747..3460319 Shewanella putrefaciens CN-32 5079878 YP_001184498.1 CDS Sputcn32_2984 NC_009438.1 3460421 3461227 R PFAM: Curli production assembly/transport component CsgG; KEGG: shm:Shewmr7_3152 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG complement(3460421..3461227) Shewanella putrefaciens CN-32 5079879 YP_001184499.1 CDS Sputcn32_2985 NC_009438.1 3461227 3461622 R KEGG: she:Shewmr4_0869 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF complement(3461227..3461622) Shewanella putrefaciens CN-32 5079880 YP_001184500.1 CDS Sputcn32_2986 NC_009438.1 3461633 3462043 R KEGG: she:Shewmr4_0868 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE complement(3461633..3462043) Shewanella putrefaciens CN-32 5079881 YP_001184501.1 CDS Sputcn32_2987 NC_009438.1 3462339 3464027 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; integral membrane sensor signal transduction histidine kinase complement(3462339..3464027) Shewanella putrefaciens CN-32 5079882 YP_001184502.1 CDS Sputcn32_2989 NC_009438.1 3465649 3466848 R PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2848 protein of unknown function DUF214; hypothetical protein complement(3465649..3466848) Shewanella putrefaciens CN-32 5079884 YP_001184503.1 CDS Sputcn32_2990 NC_009438.1 3466859 3468169 R PFAM: protein of unknown function DUF214; KEGG: sdn:Sden_2849 protein of unknown function DUF214; hypothetical protein complement(3466859..3468169) Shewanella putrefaciens CN-32 5079885 YP_001184504.1 CDS Sputcn32_2991 NC_009438.1 3468181 3468921 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3159 ABC transporter related; ABC transporter-like protein complement(3468181..3468921) Shewanella putrefaciens CN-32 5079886 YP_001184505.1 CDS Sputcn32_2992 NC_009438.1 3469018 3469281 R KEGG: shm:Shewmr7_3160 hypothetical protein; hypothetical protein complement(3469018..3469281) Shewanella putrefaciens CN-32 5079887 YP_001184506.1 CDS Sputcn32_2993 NC_009438.1 3469370 3470677 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_0861 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(3469370..3470677) Shewanella putrefaciens CN-32 5079888 YP_001184507.1 CDS Sputcn32_2994 NC_009438.1 3471254 3472285 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3471254..3472285 Shewanella putrefaciens CN-32 5079889 YP_001184508.1 CDS Sputcn32_2995 NC_009438.1 3472418 3473464 D KEGG: son:SO3696 hypothetical protein; hypothetical protein 3472418..3473464 Shewanella putrefaciens CN-32 5079890 YP_001184509.1 CDS Sputcn32_2996 NC_009438.1 3473860 3474153 D KEGG: shm:Shewmr7_3165 hypothetical protein; hypothetical protein 3473860..3474153 Shewanella putrefaciens CN-32 5079891 YP_001184510.1 CDS Sputcn32_2997 NC_009438.1 3474853 3475212 D KEGG: sdn:Sden_1048 hypothetical protein; hypothetical protein 3474853..3475212 Shewanella putrefaciens CN-32 5079892 YP_001184511.1 CDS Sputcn32_2999 NC_009438.1 3476601 3476873 D hypothetical protein 3476601..3476873 Shewanella putrefaciens CN-32 5079894 YP_001184512.1 CDS Sputcn32_3000 NC_009438.1 3477746 3478558 D KEGG: zmo:ZMO1197 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 3477746..3478558 Shewanella putrefaciens CN-32 5079895 YP_001184513.1 CDS Sputcn32_3001 NC_009438.1 3478801 3480855 D KEGG: she:Shewmr4_0079 MORN variant repeat protein; MORN repeat-containing protein 3478801..3480855 Shewanella putrefaciens CN-32 5079896 YP_001184514.1 CDS Sputcn32_3002 NC_009438.1 3481134 3481592 R PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_1748 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3481134..3481592) Shewanella putrefaciens CN-32 5079897 YP_001184515.1 CDS Sputcn32_3003 NC_009438.1 3481710 3483173 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rxy:Rxyl_0136 transcriptional regulator, GntR family; GntR family transcriptional regulator 3481710..3483173 Shewanella putrefaciens CN-32 5079898 YP_001184516.1 CDS Sputcn32_3004 NC_009438.1 3483183 3483566 R KEGG: son:SO3708 hypothetical protein; hypothetical protein complement(3483183..3483566) Shewanella putrefaciens CN-32 5079899 YP_001184517.1 CDS Sputcn32_3005 NC_009438.1 3483600 3484322 R PFAM: Abortive infection protein; KEGG: pat:Patl_0909 hypothetical protein; abortive infection protein complement(3483600..3484322) Shewanella putrefaciens CN-32 5079900 YP_001184518.1 CDS Sputcn32_3006 NC_009438.1 3484523 3485518 R PFAM: dienelactone hydrolase; KEGG: son:SO1006 dienelactone hydrolase family protein; dienelactone hydrolase complement(3484523..3485518) Shewanella putrefaciens CN-32 5079901 YP_001184519.1 CDS Sputcn32_3007 NC_009438.1 3485769 3485996 R KEGG: sdn:Sden_3091 hypothetical protein; hypothetical protein complement(3485769..3485996) Shewanella putrefaciens CN-32 5079902 YP_001184520.1 CDS Sputcn32_3008 NC_009438.1 3486112 3486549 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: shm:Shewmr7_0943 uncharacterized domain 1; hypothetical protein complement(3486112..3486549) Shewanella putrefaciens CN-32 5079903 YP_001184521.1 CDS Sputcn32_3009 NC_009438.1 3486776 3489406 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_3033 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(3486776..3489406) Shewanella putrefaciens CN-32 5079904 YP_001184522.1 CDS Sputcn32_3010 NC_009438.1 3489885 3490655 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_3034 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(3489885..3490655) Shewanella putrefaciens CN-32 5079905 YP_001184523.1 CDS Sputcn32_3011 NC_009438.1 3490810 3491760 D PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein 3490810..3491760 Shewanella putrefaciens CN-32 5079906 YP_001184524.1 CDS Sputcn32_3012 NC_009438.1 3491770 3491982 D PFAM: SlyX family protein; KEGG: she:Shewmr4_3036 SlyX family protein; SlyX family protein 3491770..3491982 Shewanella putrefaciens CN-32 5079754 YP_001184525.1 CDS Sputcn32_3013 NC_009438.1 3492036 3492581 D KEGG: she:Shewmr4_3037 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 3492036..3492581 Shewanella putrefaciens CN-32 5079755 YP_001184526.1 CDS Sputcn32_3014 NC_009438.1 3492581 3493984 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; hypothetical protein 3492581..3493984 Shewanella putrefaciens CN-32 5079756 YP_001184527.1 CDS Sputcn32_3015 NC_009438.1 3494042 3494647 D TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: shm:Shewmr7_0935 hypothetical protein; membrane lipoprotein lipid attachment site 3494042..3494647 Shewanella putrefaciens CN-32 5079757 YP_001184528.1 CDS Sputcn32_3016 NC_009438.1 3494904 3497537 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: shm:Shewmr7_0932 aminopeptidase N; aminopeptidase N 3494904..3497537 Shewanella putrefaciens CN-32 5079758 YP_001184529.1 CDS Sputcn32_3017 NC_009438.1 3497747 3499639 D PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: she:Shewmr4_3042 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3497747..3499639 Shewanella putrefaciens CN-32 5079759 YP_001184530.1 CDS Sputcn32_3018 NC_009438.1 3499767 3501194 R KEGG: shm:Shewmr7_0929 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(3499767..3501194) Shewanella putrefaciens CN-32 5079760 YP_001184531.1 CDS Sputcn32_3019 NC_009438.1 3501588 3502484 D PFAM: protein of unknown function DUF72; KEGG: shm:Shewmr7_0928 protein of unknown function DUF72; hypothetical protein 3501588..3502484 Shewanella putrefaciens CN-32 5079761 YP_001184532.1 CDS Sputcn32_3020 NC_009438.1 3502694 3504163 R PFAM: phosphate transporter; KEGG: shm:Shewmr7_0927 phosphate transporter; phosphate transporter complement(3502694..3504163) Shewanella putrefaciens CN-32 5079762 YP_001184533.1 CDS mdoD NC_009438.1 3504620 3506404 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(3504620..3506404) Shewanella putrefaciens CN-32 5079763 YP_001184534.1 CDS Sputcn32_3022 NC_009438.1 3506561 3508033 R PFAM: carbon starvation protein CstA; KEGG: shm:Shewmr7_0925 carbon starvation protein CstA; carbon starvation protein CstA complement(3506561..3508033) Shewanella putrefaciens CN-32 5079764 YP_001184535.1 CDS Sputcn32_3023 NC_009438.1 3508146 3508649 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3508146..3508649) Shewanella putrefaciens CN-32 5079765 YP_001184536.1 CDS Sputcn32_3024 NC_009438.1 3508797 3509516 R PFAM: LrgB family protein; KEGG: shm:Shewmr7_0923 LrgB family protein; LrgB family protein complement(3508797..3509516) Shewanella putrefaciens CN-32 5079766 YP_001184537.1 CDS Sputcn32_3025 NC_009438.1 3509519 3509953 R PFAM: LrgA family protein; KEGG: shm:Shewmr7_0922 LrgA family protein; LrgA family protein complement(3509519..3509953) Shewanella putrefaciens CN-32 5079767 YP_001184538.1 CDS Sputcn32_3026 NC_009438.1 3510076 3510966 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator 3510076..3510966 Shewanella putrefaciens CN-32 5079768 YP_001184539.1 CDS Sputcn32_3027 NC_009438.1 3511391 3512125 D PFAM: extracellular solute-binding protein, family 3; KEGG: shm:Shewmr7_0919 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3511391..3512125 Shewanella putrefaciens CN-32 5079769 YP_001184540.1 CDS Sputcn32_3028 NC_009438.1 3512133 3512813 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3512133..3512813 Shewanella putrefaciens CN-32 5079770 YP_001184541.1 CDS Sputcn32_3029 NC_009438.1 3512806 3513531 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_0917 ABC transporter related; ABC transporter-like protein 3512806..3513531 Shewanella putrefaciens CN-32 5079771 YP_001184542.1 CDS Sputcn32_3030 NC_009438.1 3514011 3514748 R hypothetical protein complement(3514011..3514748) Shewanella putrefaciens CN-32 5079772 YP_001184543.1 CDS Sputcn32_3031 NC_009438.1 3514874 3515161 R KEGG: pfl:PFL_3339 hypothetical protein; hypothetical protein complement(3514874..3515161) Shewanella putrefaciens CN-32 5079773 YP_001184544.1 CDS Sputcn32_3032 NC_009438.1 3515352 3515726 R KEGG: rba:RB954 hypothetical protein; hypothetical protein complement(3515352..3515726) Shewanella putrefaciens CN-32 5079774 YP_001184545.1 CDS Sputcn32_3033 NC_009438.1 3515786 3515944 R KEGG: son:SO1508 hypothetical protein; hypothetical protein complement(3515786..3515944) Shewanella putrefaciens CN-32 5079775 YP_001184546.1 CDS Sputcn32_3034 NC_009438.1 3516076 3516729 D catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3516076..3516729 Shewanella putrefaciens CN-32 5079776 YP_001184547.1 CDS Sputcn32_3035 NC_009438.1 3517043 3517687 D PFAM: heat shock protein DnaJ domain protein; KEGG: shm:Shewmr7_0910 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3517043..3517687 Shewanella putrefaciens CN-32 5079777 YP_001184548.1 CDS Sputcn32_3036 NC_009438.1 3517991 3518743 D PFAM: DSBA oxidoreductase; KEGG: shm:Shewmr7_0909 DsbA oxidoreductase; DSBA oxidoreductase 3517991..3518743 Shewanella putrefaciens CN-32 5079778 YP_001184549.1 CDS Sputcn32_3037 NC_009438.1 3518792 3519337 R KEGG: son:SO3719 hypothetical protein; hypothetical protein complement(3518792..3519337) Shewanella putrefaciens CN-32 5079779 YP_001184550.1 CDS Sputcn32_3038 NC_009438.1 3519371 3519892 R KEGG: shm:Shewmr7_0906 protoporphyrinogen oxidase; protoporphyrinogen oxidase complement(3519371..3519892) Shewanella putrefaciens CN-32 5079780 YP_001184551.1 CDS Sputcn32_3039 NC_009438.1 3520361 3521200 D KEGG: shm:Shewmr7_0904 hypothetical protein; hypothetical protein 3520361..3521200 Shewanella putrefaciens CN-32 5079781 YP_001184552.1 CDS Sputcn32_3040 NC_009438.1 3521258 3521875 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(3521258..3521875) Shewanella putrefaciens CN-32 5079782 YP_001184553.1 CDS Sputcn32_3041 NC_009438.1 3521940 3523664 R PFAM: Citrate transporter; TrkA-C domain protein; KEGG: shm:Shewmr7_0902 TrkA-C domain protein; TrkA domain-containing protein complement(3521940..3523664) Shewanella putrefaciens CN-32 5079783 YP_001184554.1 CDS cysN NC_009438.1 3523668 3525110 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3523668..3525110) Shewanella putrefaciens CN-32 5079784 YP_001184555.1 CDS Sputcn32_3043 NC_009438.1 3525193 3526101 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3525193..3526101) Shewanella putrefaciens CN-32 5079785 YP_001184556.1 CDS Sputcn32_3044 NC_009438.1 3526167 3527000 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: shm:Shewmr7_0899 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(3526167..3527000) Shewanella putrefaciens CN-32 5079786 YP_001184557.1 CDS Sputcn32_3045 NC_009438.1 3527439 3528320 D PFAM: phospholipase A1; KEGG: shm:Shewmr7_0898 phospholipase A(1); phospholipase A(1) 3527439..3528320 Shewanella putrefaciens CN-32 5079787 YP_001184558.1 CDS Sputcn32_3046 NC_009438.1 3528562 3530127 D PFAM: peptidase S41; KEGG: she:Shewmr4_3075 hypothetical protein; peptidase S41 3528562..3530127 Shewanella putrefaciens CN-32 5079788 YP_001184559.1 CDS pbpG NC_009438.1 3530182 3531150 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(3530182..3531150) Shewanella putrefaciens CN-32 5079789 YP_001184560.1 CDS Sputcn32_3048 NC_009438.1 3531711 3531950 D KEGG: son:SO0994 hypothetical protein; hypothetical protein 3531711..3531950 Shewanella putrefaciens CN-32 5079790 YP_001184561.1 CDS lysS NC_009438.1 3532061 3533563 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3532061..3533563) Shewanella putrefaciens CN-32 5079791 YP_001184562.1 CDS Sputcn32_3050 NC_009438.1 3533593 3534651 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: shm:Shewmr7_3197 peptide chain release factor 2; peptide chain release factor 2 complement(3533593..3534651) Shewanella putrefaciens CN-32 5079792 YP_001184563.1 CDS Sputcn32_3051 NC_009438.1 3535188 3539462 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: shm:Shewmr7_3198 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 3535188..3539462 Shewanella putrefaciens CN-32 5079793 YP_001184564.1 CDS Sputcn32_3052 NC_009438.1 3539538 3541202 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3539538..3541202) Shewanella putrefaciens CN-32 5079794 YP_001184565.1 CDS Sputcn32_3053 NC_009438.1 3541338 3542489 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: she:Shewmr4_0823 chromate transporter, chromate ion transporter (CHR) family; chromate transporter complement(3541338..3542489) Shewanella putrefaciens CN-32 5079795 YP_001184566.1 CDS rumB NC_009438.1 3542618 3543787 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(3542618..3543787) Shewanella putrefaciens CN-32 5079796 YP_001184567.1 CDS Sputcn32_3055 NC_009438.1 3543864 3545039 R PFAM: FAD dependent oxidoreductase; KEGG: shm:Shewmr7_3207 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3543864..3545039) Shewanella putrefaciens CN-32 5079797 YP_001184568.1 CDS Sputcn32_3056 NC_009438.1 3545145 3545651 R PFAM: regulatory protein, MarR; KEGG: she:Shewmr4_0815 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3545145..3545651) Shewanella putrefaciens CN-32 5079798 YP_001184569.1 CDS Sputcn32_3057 NC_009438.1 3545786 3546211 D PFAM: OsmC family protein; KEGG: shm:Shewmr7_3209 OsmC family protein; OsmC family protein 3545786..3546211 Shewanella putrefaciens CN-32 5079799 YP_001184570.1 CDS Sputcn32_3058 NC_009438.1 3546439 3547860 D KEGG: son:SO0975 hypothetical protein; hypothetical protein 3546439..3547860 Shewanella putrefaciens CN-32 5079800 YP_001184571.1 CDS Sputcn32_3059 NC_009438.1 3547945 3548130 D KEGG: shm:Shewmr7_3211 hypothetical protein; hypothetical protein 3547945..3548130 Shewanella putrefaciens CN-32 5079801 YP_001184572.1 CDS Sputcn32_3060 NC_009438.1 3548247 3549983 R KEGG: son:SO3733 hypothetical protein; hypothetical protein complement(3548247..3549983) Shewanella putrefaciens CN-32 5079802 YP_001184573.1 CDS mtgA NC_009438.1 3550239 3551024 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3550239..3551024) Shewanella putrefaciens CN-32 5079803 YP_001184574.1 CDS Sputcn32_3062 NC_009438.1 3551606 3552388 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3551606..3552388) Shewanella putrefaciens CN-32 5079804 YP_001184575.1 CDS Sputcn32_3063 NC_009438.1 3552381 3554078 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3552381..3554078) Shewanella putrefaciens CN-32 5079703 YP_001184576.1 CDS Sputcn32_3064 NC_009438.1 3554178 3555977 R TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: she:Shewmr4_3080 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein, alpha chain complement(3554178..3555977) Shewanella putrefaciens CN-32 5079704 YP_001184577.1 CDS pntA NC_009438.1 3556398 3557924 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 3556398..3557924 Shewanella putrefaciens CN-32 5079705 YP_001184578.1 CDS pntB NC_009438.1 3557936 3559420 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 3557936..3559420 Shewanella putrefaciens CN-32 5079706 YP_001184579.1 CDS Sputcn32_3067 NC_009438.1 3559528 3560007 R PFAM: regulatory protein, TetR; KEGG: shm:Shewmr7_0888 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3559528..3560007) Shewanella putrefaciens CN-32 5079707 YP_001184580.1 CDS Sputcn32_3068 NC_009438.1 3560160 3560987 R KEGG: son:SO3744 hypothetical protein; hypothetical protein complement(3560160..3560987) Shewanella putrefaciens CN-32 5079708 YP_001184581.1 CDS Sputcn32_3069 NC_009438.1 3560984 3562414 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3560984..3562414) Shewanella putrefaciens CN-32 5079709 YP_001184582.1 CDS Sputcn32_3070 NC_009438.1 3562572 3563444 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 3562572..3563444 Shewanella putrefaciens CN-32 5079710 YP_001184583.1 CDS Sputcn32_3071 NC_009438.1 3563511 3565235 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(3563511..3565235) Shewanella putrefaciens CN-32 5079711 YP_001184584.1 CDS Sputcn32_3072 NC_009438.1 3565847 3568132 D KEGG: shm:Shewmr7_0883 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein 3565847..3568132 Shewanella putrefaciens CN-32 5079712 YP_001184585.1 CDS Sputcn32_3073 NC_009438.1 3568359 3569912 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 3568359..3569912 Shewanella putrefaciens CN-32 5079713 YP_001184586.1 CDS Sputcn32_3074 NC_009438.1 3570084 3570998 D PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein 3570084..3570998 Shewanella putrefaciens CN-32 5079714 YP_001184587.1 CDS Sputcn32_3075 NC_009438.1 3571061 3571888 R KEGG: shm:Shewmr7_0880 hypothetical protein; hypothetical protein complement(3571061..3571888) Shewanella putrefaciens CN-32 5079715 YP_001184588.1 CDS Sputcn32_3076 NC_009438.1 3572132 3573349 D PFAM: AFG1-family ATPase; KEGG: she:Shewmr4_3102 AFG1-family ATPase; AFG1 family ATPase 3572132..3573349 Shewanella putrefaciens CN-32 5079716 YP_001184589.1 CDS Sputcn32_3077 NC_009438.1 3573377 3574060 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_2051 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator complement(3573377..3574060) Shewanella putrefaciens CN-32 5079717 YP_001184590.1 CDS Sputcn32_3078 NC_009438.1 3574110 3576770 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: xom:XOO_3621 two-component system sensor protein; osmosensitive K+ channel signal transduction histidine kinase complement(3574110..3576770) Shewanella putrefaciens CN-32 5079718 YP_001184591.1 CDS Sputcn32_3079 NC_009438.1 3576773 3577543 R KEGG: pfo:Pfl_3155 hypothetical protein; hypothetical protein complement(3576773..3577543) Shewanella putrefaciens CN-32 5079719 YP_001184592.1 CDS Sputcn32_3080 NC_009438.1 3577578 3578177 R KEGG: mca:MCA2215 K+-transporting ATPase, C subunit; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase subunit C complement(3577578..3578177) Shewanella putrefaciens CN-32 5079720 YP_001184593.1 CDS Sputcn32_3081 NC_009438.1 3578187 3580205 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: xcb:XC_3531 potassium-transporting ATPase B chain; K+-transporting ATPase subunit B complement(3578187..3580205) Shewanella putrefaciens CN-32 5079721 YP_001184594.1 CDS Sputcn32_3082 NC_009438.1 3580208 3581932 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(3580208..3581932) Shewanella putrefaciens CN-32 5079722 YP_001184595.1 CDS Sputcn32_3083 NC_009438.1 3582590 3583660 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator; LysR family transcriptional regulator complement(3582590..3583660) Shewanella putrefaciens CN-32 5079723 YP_001184596.1 CDS Sputcn32_3084 NC_009438.1 3583724 3584683 D PFAM: protein of unknown function DUF897; KEGG: she:Shewmr4_3107 protein of unknown function DUF897; hypothetical protein 3583724..3584683 Shewanella putrefaciens CN-32 5079724 YP_001184597.1 CDS Sputcn32_3085 NC_009438.1 3584766 3585737 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: shm:Shewmr7_0864 diguanylate cyclase with GAF sensor; diguanylate cyclase complement(3584766..3585737) Shewanella putrefaciens CN-32 5079725 YP_001184598.1 CDS Sputcn32_3086 NC_009438.1 3585814 3588678 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3585814..3588678) Shewanella putrefaciens CN-32 5079726 YP_001184599.1 CDS Sputcn32_3087 NC_009438.1 3588904 3589887 D KEGG: she:Shewmr4_3110 hypothetical protein; hypothetical protein 3588904..3589887 Shewanella putrefaciens CN-32 5079727 YP_001184600.1 CDS Sputcn32_3088 NC_009438.1 3589901 3590800 D KEGG: shm:Shewmr7_0861 protein of unknown function DUF350; hypothetical protein 3589901..3590800 Shewanella putrefaciens CN-32 5079728 YP_001184601.1 CDS Sputcn32_3089 NC_009438.1 3590805 3592529 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3590805..3592529 Shewanella putrefaciens CN-32 5079729 YP_001184602.1 CDS Sputcn32_3090 NC_009438.1 3592608 3593021 D KEGG: shm:Shewmr7_0859 hypothetical protein; hypothetical protein 3592608..3593021 Shewanella putrefaciens CN-32 5079730 YP_001184603.1 CDS Sputcn32_3091 NC_009438.1 3593033 3593722 D PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA 3593033..3593722 Shewanella putrefaciens CN-32 5079731 YP_001184604.1 CDS Sputcn32_3092 NC_009438.1 3593881 3594534 D KEGG: son:SO3766 hypothetical protein; hypothetical protein 3593881..3594534 Shewanella putrefaciens CN-32 5079732 YP_001184605.1 CDS Sputcn32_3093 NC_009438.1 3594656 3594985 D KEGG: shm:Shewmr7_0856 hypothetical protein; hypothetical protein 3594656..3594985 Shewanella putrefaciens CN-32 5079733 YP_001184606.1 CDS Sputcn32_3094 NC_009438.1 3595128 3595949 D PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein 3595128..3595949 Shewanella putrefaciens CN-32 5079734 YP_001184607.1 CDS Sputcn32_3095 NC_009438.1 3596025 3597551 R PFAM: adenylate cyclase; KEGG: she:Shewmr4_3118 adenylate cyclase; adenylate cyclase complement(3596025..3597551) Shewanella putrefaciens CN-32 5079735 YP_001184608.1 CDS Sputcn32_3096 NC_009438.1 3597769 3598449 D PFAM: protein of unknown function DUF47; KEGG: shm:Shewmr7_0853 protein of unknown function DUF47; hypothetical protein 3597769..3598449 Shewanella putrefaciens CN-32 5079736 YP_001184609.1 CDS Sputcn32_3097 NC_009438.1 3598475 3599764 D PFAM: phosphate transporter; KEGG: she:Shewmr4_3120 phosphate transporter; phosphate transporter 3598475..3599764 Shewanella putrefaciens CN-32 5079737 YP_001184610.1 CDS Sputcn32_3098 NC_009438.1 3599961 3600509 D PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: shm:Shewmr7_0851 SH3 domain protein domain protein; SH3 type 3 domain-containing protein 3599961..3600509 Shewanella putrefaciens CN-32 5079738 YP_001184611.1 CDS Sputcn32_3099 NC_009438.1 3600757 3603951 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3600757..3603951 Shewanella putrefaciens CN-32 5079739 YP_001184612.1 CDS Sputcn32_3100 NC_009438.1 3604909 3605406 D hypothetical protein 3604909..3605406 Shewanella putrefaciens CN-32 5079740 YP_001184613.1 CDS Sputcn32_3101 NC_009438.1 3605443 3605793 D hypothetical protein 3605443..3605793 Shewanella putrefaciens CN-32 5079741 YP_001184614.1 CDS Sputcn32_3102 NC_009438.1 3606596 3607330 D PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein 3606596..3607330 Shewanella putrefaciens CN-32 5079742 YP_001184615.1 CDS Sputcn32_3103 NC_009438.1 3607428 3607604 D KEGG: son:SO3777 hypothetical protein; hypothetical protein 3607428..3607604 Shewanella putrefaciens CN-32 5079743 YP_001184616.1 CDS Sputcn32_3104 NC_009438.1 3607714 3608307 R TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB complement(3607714..3608307) Shewanella putrefaciens CN-32 5079744 YP_001184617.1 CDS Sputcn32_3105 NC_009438.1 3608355 3610106 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(3608355..3610106) Shewanella putrefaciens CN-32 5079745 YP_001184618.1 CDS Sputcn32_3106 NC_009438.1 3610103 3612034 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(3610103..3612034) Shewanella putrefaciens CN-32 5079746 YP_001184619.1 CDS Sputcn32_3107 NC_009438.1 3612229 3613269 R KEGG: shm:Shewmr7_0839 hypothetical protein; hypothetical protein complement(3612229..3613269) Shewanella putrefaciens CN-32 5079747 YP_001184620.1 CDS Sputcn32_3108 NC_009438.1 3613703 3615355 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3613703..3615355 Shewanella putrefaciens CN-32 5079748 YP_001184621.1 CDS Sputcn32_3109 NC_009438.1 3615458 3617026 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3931 aerotaxis receptor; methyl-accepting chemotaxis sensory transducer complement(3615458..3617026) Shewanella putrefaciens CN-32 5079749 YP_001184622.1 CDS Sputcn32_3110 NC_009438.1 3617304 3618680 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(3617304..3618680) Shewanella putrefaciens CN-32 5079750 YP_001184623.1 CDS Sputcn32_3111 NC_009438.1 3619008 3619895 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: she:Shewmr4_0744 pirin domain protein domain protein; pirin domain-containing protein complement(3619008..3619895) Shewanella putrefaciens CN-32 5079751 YP_001184624.1 CDS Sputcn32_3112 NC_009438.1 3620600 3621130 R KEGG: son:SO2169.1 hypothetical protein; hypothetical protein complement(3620600..3621130) Shewanella putrefaciens CN-32 5079752 YP_001184625.1 CDS Sputcn32_3113 NC_009438.1 3621456 3622079 R KEGG: she:Shewmr4_2555 protein of unknown function DUF1568; hypothetical protein complement(3621456..3622079) Shewanella putrefaciens CN-32 5079753 YP_001184626.1 CDS Sputcn32_3115 NC_009438.1 3622576 3623037 R hypothetical protein complement(3622576..3623037) Shewanella putrefaciens CN-32 5078459 YP_001184627.1 CDS Sputcn32_3116 NC_009438.1 3623552 3623755 R KEGG: sdn:Sden_3177 hypothetical protein; hypothetical protein complement(3623552..3623755) Shewanella putrefaciens CN-32 5078460 YP_001184628.1 CDS Sputcn32_3117 NC_009438.1 3624008 3625918 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter-like protein 3624008..3625918 Shewanella putrefaciens CN-32 5078461 YP_001184629.1 CDS Sputcn32_3118 NC_009438.1 3625930 3626424 D KEGG: shm:Shewmr7_3282 hypothetical protein; hypothetical protein 3625930..3626424 Shewanella putrefaciens CN-32 5078462 YP_001184630.1 CDS Sputcn32_3119 NC_009438.1 3626462 3626872 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(3626462..3626872) Shewanella putrefaciens CN-32 5078463 YP_001184631.1 CDS Sputcn32_3120 NC_009438.1 3626874 3628541 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase complement(3626874..3628541) Shewanella putrefaciens CN-32 5078464 YP_001184632.1 CDS Sputcn32_3121 NC_009438.1 3628553 3629059 R KEGG: son:SO0881 hypothetical protein; hypothetical protein complement(3628553..3629059) Shewanella putrefaciens CN-32 5078465 YP_001184633.1 CDS Sputcn32_3122 NC_009438.1 3629169 3630197 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 3629169..3630197 Shewanella putrefaciens CN-32 5078466 YP_001184634.1 CDS Sputcn32_3123 NC_009438.1 3630181 3630426 D KEGG: shm:Shewmr7_3287 protein of unknown function UPF0270; hypothetical protein 3630181..3630426 Shewanella putrefaciens CN-32 5078467 YP_001184635.1 CDS Sputcn32_3124 NC_009438.1 3630517 3631404 D PFAM: phosphoribulokinase/uridine kinase; KEGG: shm:Shewmr7_3288 phosphoribulokinase; phosphoribulokinase 3630517..3631404 Shewanella putrefaciens CN-32 5078468 YP_001184636.1 CDS Sputcn32_3125 NC_009438.1 3631931 3632473 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3631931..3632473) Shewanella putrefaciens CN-32 5078469 YP_001184637.1 CDS Sputcn32_3126 NC_009438.1 3632609 3633901 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(3632609..3633901) Shewanella putrefaciens CN-32 5078470 YP_001184638.1 CDS Sputcn32_3127 NC_009438.1 3634089 3634793 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3634089..3634793 Shewanella putrefaciens CN-32 5078471 YP_001184639.1 CDS Sputcn32_3128 NC_009438.1 3634957 3635400 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: shm:Shewmr7_3292 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3634957..3635400 Shewanella putrefaciens CN-32 5078472 YP_001184640.1 CDS Sputcn32_3129 NC_009438.1 3635577 3636476 D PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: shm:Shewmr7_3293 glutamyl-tRNA synthetase, class Ic; glutamate--tRNA ligase 3635577..3636476 Shewanella putrefaciens CN-32 5078473 YP_001184641.1 CDS Sputcn32_3130 NC_009438.1 3636592 3638076 D TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: she:Shewmr4_0728 poly(A) polymerase; poly(A) polymerase 3636592..3638076 Shewanella putrefaciens CN-32 5078474 YP_001184642.1 CDS Sputcn32_3131 NC_009438.1 3638076 3638558 D KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3638076..3638558 Shewanella putrefaciens CN-32 5078475 YP_001184643.1 CDS panB NC_009438.1 3638622 3639416 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3638622..3639416 Shewanella putrefaciens CN-32 5078476 YP_001184644.1 CDS panC NC_009438.1 3639470 3640315 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3639470..3640315 Shewanella putrefaciens CN-32 5078477 YP_001184645.1 CDS Sputcn32_3134 NC_009438.1 3640527 3641054 D KEGG: she:Shewmr4_0724 hypothetical protein; hypothetical protein 3640527..3641054 Shewanella putrefaciens CN-32 5078478 YP_001184646.1 CDS Sputcn32_3135 NC_009438.1 3641377 3641796 D PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative; curlin-associated protein 3641377..3641796 Shewanella putrefaciens CN-32 5078479 YP_001184647.1 CDS Sputcn32_3136 NC_009438.1 3641811 3643301 D PFAM: Curlin associated repeat protein; KEGG: she:Shewmr4_0721 curlin associated repeat protein; curlin-associated protein 3641811..3643301 Shewanella putrefaciens CN-32 5078480 YP_001184648.1 CDS Sputcn32_3137 NC_009438.1 3643470 3644099 R PFAM: regulatory protein, LuxR; KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family; response regulator receiver protein complement(3643470..3644099) Shewanella putrefaciens CN-32 5078481 YP_001184649.1 CDS Sputcn32_3138 NC_009438.1 3644529 3645137 R KEGG: she:Shewmr4_0719 hypothetical protein; hypothetical protein complement(3644529..3645137) Shewanella putrefaciens CN-32 5078482 YP_001184650.1 CDS Sputcn32_3139 NC_009438.1 3645292 3646521 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3645292..3646521 Shewanella putrefaciens CN-32 5078483 YP_001184651.1 CDS Sputcn32_3140 NC_009438.1 3646672 3647628 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 3646672..3647628 Shewanella putrefaciens CN-32 5078484 YP_001184652.1 CDS Sputcn32_3141 NC_009438.1 3647691 3648707 R PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: shm:Shewmr7_3306 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase complement(3647691..3648707) Shewanella putrefaciens CN-32 5078485 YP_001184653.1 CDS Sputcn32_3142 NC_009438.1 3648862 3654177 R KEGG: shm:Shewmr7_3307 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(3648862..3654177) Shewanella putrefaciens CN-32 5078486 YP_001184654.1 CDS Sputcn32_3143 NC_009438.1 3654310 3655668 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: she:Shewmr4_0714 amino acid carrier protein; amino acid carrier protein complement(3654310..3655668) Shewanella putrefaciens CN-32 5078487 YP_001184655.1 CDS Sputcn32_3144 NC_009438.1 3656410 3657081 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3309 ABC transporter related; ABC transporter-like protein 3656410..3657081 Shewanella putrefaciens CN-32 5078488 YP_001184656.1 CDS Sputcn32_3145 NC_009438.1 3657078 3659714 D PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein 3657078..3659714 Shewanella putrefaciens CN-32 5078489 YP_001184657.1 CDS Sputcn32_3146 NC_009438.1 3659711 3660922 D KEGG: she:Shewmr4_0711 hypothetical protein; hypothetical protein 3659711..3660922 Shewanella putrefaciens CN-32 5078490 YP_001184658.1 CDS Sputcn32_3147 NC_009438.1 3661245 3661514 D PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein 3661245..3661514 Shewanella putrefaciens CN-32 5078491 YP_001184659.1 CDS Sputcn32_3148 NC_009438.1 3661511 3663991 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 3661511..3663991 Shewanella putrefaciens CN-32 5078492 YP_001184660.1 CDS napG NC_009438.1 3664045 3664779 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 3664045..3664779 Shewanella putrefaciens CN-32 5078493 YP_001184661.1 CDS napH NC_009438.1 3664776 3665747 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 3664776..3665747 Shewanella putrefaciens CN-32 5078494 YP_001184662.1 CDS Sputcn32_3151 NC_009438.1 3665744 3666175 D PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: shm:Shewmr7_3321 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 3665744..3666175 Shewanella putrefaciens CN-32 5078495 YP_001184663.1 CDS Sputcn32_3152 NC_009438.1 3666374 3666526 R KEGG: shm:Shewmr7_3322 hypothetical protein; hypothetical protein complement(3666374..3666526) Shewanella putrefaciens CN-32 5078496 YP_001184664.1 CDS Sputcn32_3153 NC_009438.1 3666620 3667507 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_3323 transcriptional regulator, LysR family; LysR family transcriptional regulator 3666620..3667507 Shewanella putrefaciens CN-32 5078497 YP_001184665.1 CDS Sputcn32_3154 NC_009438.1 3667622 3669715 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3667622..3669715) Shewanella putrefaciens CN-32 5078498 YP_001184666.1 CDS Sputcn32_3155 NC_009438.1 3670282 3674835 R PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase subunit L complement(3670282..3674835) Shewanella putrefaciens CN-32 5078499 YP_001184667.1 CDS Sputcn32_3156 NC_009438.1 3674957 3675868 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0695 transcriptional regulator, LysR family; LysR family transcriptional regulator 3674957..3675868 Shewanella putrefaciens CN-32 5078500 YP_001184668.1 CDS Sputcn32_3157 NC_009438.1 3675949 3676761 R PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative; beta-lactamase complement(3675949..3676761) Shewanella putrefaciens CN-32 5078501 YP_001184669.1 CDS Sputcn32_3158 NC_009438.1 3677121 3678275 D KEGG: she:Shewmr4_0693 hypothetical protein; hypothetical protein 3677121..3678275 Shewanella putrefaciens CN-32 5078502 YP_001184670.1 CDS Sputcn32_3159 NC_009438.1 3678457 3679116 D PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein 3678457..3679116 Shewanella putrefaciens CN-32 5078503 YP_001184671.1 CDS Sputcn32_3160 NC_009438.1 3679254 3680033 D PFAM: Endonuclease I; KEGG: she:Shewmr4_0691 deoxyribonuclease I; deoxyribonuclease I 3679254..3680033 Shewanella putrefaciens CN-32 5078504 YP_001184672.1 CDS Sputcn32_3161 NC_009438.1 3680042 3680773 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3680042..3680773 Shewanella putrefaciens CN-32 5078505 YP_001184673.1 CDS Sputcn32_3162 NC_009438.1 3680838 3681791 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3680838..3681791 Shewanella putrefaciens CN-32 5078506 YP_001184674.1 CDS Sputcn32_3163 NC_009438.1 3681878 3683200 D PFAM: Alkaline phosphatase; KEGG: shm:Shewmr7_3334 alkaline phosphatase; alkaline phosphatase 3681878..3683200 Shewanella putrefaciens CN-32 5078507 YP_001184675.1 CDS Sputcn32_3164 NC_009438.1 3683352 3684395 D PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: she:Shewmr4_0687 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3683352..3684395 Shewanella putrefaciens CN-32 5078508 YP_001184676.1 CDS Sputcn32_3165 NC_009438.1 3684823 3686511 D PFAM: protein of unknown function DUF342; KEGG: she:Shewmr4_3273 protein of unknown function DUF342; hypothetical protein 3684823..3686511 Shewanella putrefaciens CN-32 5080108 YP_001184677.1 CDS Sputcn32_3166 NC_009438.1 3686680 3687057 D KEGG: she:Shewmr4_3274 hypothetical protein; hypothetical protein 3686680..3687057 Shewanella putrefaciens CN-32 5080109 YP_001184678.1 CDS Sputcn32_3167 NC_009438.1 3687305 3688441 D PFAM: peptidase M50; KEGG: shm:Shewmr7_0672 peptidase M50; peptidase M50 3687305..3688441 Shewanella putrefaciens CN-32 5080110 YP_001184679.1 CDS Sputcn32_3168 NC_009438.1 3688463 3689551 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvu:DVU0416 GGDEF domain protein; diguanylate cyclase complement(3688463..3689551) Shewanella putrefaciens CN-32 5080111 YP_001184680.1 CDS Sputcn32_3169 NC_009438.1 3689709 3691124 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: son:SO0822 outer membrane efflux family protein; RND efflux system outer membrane lipoprotein complement(3689709..3691124) Shewanella putrefaciens CN-32 5080112 YP_001184681.1 CDS Sputcn32_3170 NC_009438.1 3691132 3693075 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO0821 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein complement(3691132..3693075) Shewanella putrefaciens CN-32 5080113 YP_001184682.1 CDS Sputcn32_3171 NC_009438.1 3693078 3694328 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: sugar-specific permease, EIIA 1 domain; secretion protein HlyD family protein; KEGG: son:SO0820 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(3693078..3694328) Shewanella putrefaciens CN-32 5080114 YP_001184683.1 CDS Sputcn32_3172 NC_009438.1 3694683 3696953 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(3694683..3696953) Shewanella putrefaciens CN-32 5080115 YP_001184684.1 CDS Sputcn32_3173 NC_009438.1 3697154 3698059 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0653 transcriptional regulator, LysR family; LysR family transcriptional regulator 3697154..3698059 Shewanella putrefaciens CN-32 5080116 YP_001184685.1 CDS Sputcn32_3174 NC_009438.1 3698135 3698863 R PFAM: HDOD; KEGG: shm:Shewmr7_0652 putative signal transduction protein; putative signal transduction protein complement(3698135..3698863) Shewanella putrefaciens CN-32 5080117 YP_001184686.1 CDS Sputcn32_3175 NC_009438.1 3699558 3700553 D KEGG: sfr:Sfri_1031 hypothetical protein; hypothetical protein 3699558..3700553 Shewanella putrefaciens CN-32 5080118 YP_001184687.1 CDS Sputcn32_3176 NC_009438.1 3700626 3702587 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_0651 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(3700626..3702587) Shewanella putrefaciens CN-32 5080119 YP_001184688.1 CDS Sputcn32_3177 NC_009438.1 3703048 3704490 R KEGG: son:SO0813 hypothetical protein; hypothetical protein complement(3703048..3704490) Shewanella putrefaciens CN-32 5080120 YP_001184689.1 CDS rihA NC_009438.1 3704694 3705650 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 3704694..3705650 Shewanella putrefaciens CN-32 5080121 YP_001184690.1 CDS Sputcn32_3179 NC_009438.1 3705670 3706581 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 3705670..3706581 Shewanella putrefaciens CN-32 5080122 YP_001184691.1 CDS Sputcn32_3180 NC_009438.1 3706752 3707228 D TIGRFAM: Azurin; PFAM: blue (type 1) copper domain protein; KEGG: shm:Shewmr7_0645 blue (type 1) copper domain protein; azurin 3706752..3707228 Shewanella putrefaciens CN-32 5080123 YP_001184692.1 CDS Sputcn32_3181 NC_009438.1 3707323 3708513 R KEGG: sdn:Sden_0953 hypothetical protein; hypothetical protein complement(3707323..3708513) Shewanella putrefaciens CN-32 5080124 YP_001184693.1 CDS Sputcn32_3182 NC_009438.1 3708914 3709216 R KEGG: she:Shewmr4_3309 hypothetical protein; hypothetical protein complement(3708914..3709216) Shewanella putrefaciens CN-32 5080125 YP_001184694.1 CDS Sputcn32_3183 NC_009438.1 3709545 3710111 R KEGG: shm:Shewmr7_0642 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase complement(3709545..3710111) Shewanella putrefaciens CN-32 5080126 YP_001184695.1 CDS Sputcn32_3184 NC_009438.1 3710399 3712162 R PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_3312 twin-arginine translocation pathway signal; alkaline phosphatase complement(3710399..3712162) Shewanella putrefaciens CN-32 5080127 YP_001184696.1 CDS Sputcn32_3185 NC_009438.1 3712433 3712861 D PFAM: CBS domain containing protein; KEGG: shm:Shewmr7_0640 CBS domain containing membrane protein; hypothetical protein 3712433..3712861 Shewanella putrefaciens CN-32 5080128 YP_001184697.1 CDS Sputcn32_3186 NC_009438.1 3712961 3713566 D KEGG: son:SO0804 hypothetical protein; hypothetical protein 3712961..3713566 Shewanella putrefaciens CN-32 5080129 YP_001184698.1 CDS Sputcn32_3187 NC_009438.1 3713594 3715054 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: shm:Shewmr7_0638 MATE efflux family protein; MATE efflux family protein complement(3713594..3715054) Shewanella putrefaciens CN-32 5080130 YP_001184699.1 CDS Sputcn32_3188 NC_009438.1 3715340 3716257 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: shm:Shewmr7_0637 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 3715340..3716257 Shewanella putrefaciens CN-32 5080131 YP_001184700.1 CDS Sputcn32_3189 NC_009438.1 3716357 3717136 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3716357..3717136) Shewanella putrefaciens CN-32 5080132 YP_001184701.1 CDS Sputcn32_3190 NC_009438.1 3717299 3717781 R PFAM: protein of unknown function DUF985; KEGG: shm:Shewmr7_0636 protein of unknown function DUF985; hypothetical protein complement(3717299..3717781) Shewanella putrefaciens CN-32 5080133 YP_001184702.1 CDS Sputcn32_3191 NC_009438.1 3717934 3720096 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3318 TonB-dependent receptor; TonB-dependent receptor 3717934..3720096 Shewanella putrefaciens CN-32 5080134 YP_001184703.1 CDS Sputcn32_3192 NC_009438.1 3720096 3720557 D KEGG: she:Shewmr4_3319 hypothetical protein; hypothetical protein 3720096..3720557 Shewanella putrefaciens CN-32 5080135 YP_001184704.1 CDS Sputcn32_3193 NC_009438.1 3720639 3722744 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA609 putative cation transport ATPase; heavy metal translocating P-type ATPase complement(3720639..3722744) Shewanella putrefaciens CN-32 5080136 YP_001184705.1 CDS Sputcn32_3194 NC_009438.1 3722731 3723069 R KEGG: rpa:RPA2334 hypothetical protein; hypothetical protein complement(3722731..3723069) Shewanella putrefaciens CN-32 5080137 YP_001184706.1 CDS Sputcn32_3195 NC_009438.1 3723087 3723365 R KEGG: rpa:RPA2335 hypothetical protein; hypothetical protein complement(3723087..3723365) Shewanella putrefaciens CN-32 5080138 YP_001184707.1 CDS Sputcn32_3196 NC_009438.1 3723346 3723594 R hypothetical protein complement(3723346..3723594) Shewanella putrefaciens CN-32 5080139 YP_001184708.1 CDS Sputcn32_3197 NC_009438.1 3723631 3723975 R KEGG: eba:ebB16 hypothetical protein; hypothetical protein complement(3723631..3723975) Shewanella putrefaciens CN-32 5080140 YP_001184709.1 CDS Sputcn32_3198 NC_009438.1 3723996 3724565 R KEGG: eba:ebA616 hypothetical protein; hypothetical protein complement(3723996..3724565) Shewanella putrefaciens CN-32 5080141 YP_001184710.1 CDS Sputcn32_3199 NC_009438.1 3724683 3726869 R TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: shm:Shewmr7_0632 uncharacterized domain; hypothetical protein complement(3724683..3726869) Shewanella putrefaciens CN-32 5080142 YP_001184711.1 CDS Sputcn32_3200 NC_009438.1 3727162 3728826 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: shm:Shewmr7_3199 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3727162..3728826 Shewanella putrefaciens CN-32 5080143 YP_001184712.1 CDS Sputcn32_3201 NC_009438.1 3729026 3729205 D KEGG: cps:CPS_2516 hypothetical protein; hypothetical protein 3729026..3729205 Shewanella putrefaciens CN-32 5080144 YP_001184713.1 CDS Sputcn32_3202 NC_009438.1 3729236 3729637 R KEGG: son:SO0792 hypothetical protein; hypothetical protein complement(3729236..3729637) Shewanella putrefaciens CN-32 5080145 YP_001184714.1 CDS Sputcn32_3203 NC_009438.1 3729902 3730147 D KEGG: son:SO0788 hypothetical protein; hypothetical protein 3729902..3730147 Shewanella putrefaciens CN-32 5080146 YP_001184715.1 CDS Sputcn32_3204 NC_009438.1 3730540 3731070 D KEGG: pen:PSEEN2314 hypothetical protein; hypothetical protein 3730540..3731070 Shewanella putrefaciens CN-32 5080147 YP_001184716.1 CDS Sputcn32_3205 NC_009438.1 3731541 3731945 D KEGG: son:SO0784 hypothetical protein; hypothetical protein 3731541..3731945 Shewanella putrefaciens CN-32 5080148 YP_001184717.1 CDS Sputcn32_3206 NC_009438.1 3732023 3733354 D KEGG: mbu:Mbur_1645 ATPase; ATPase 3732023..3733354 Shewanella putrefaciens CN-32 5080149 YP_001184718.1 CDS Sputcn32_3207 NC_009438.1 3733338 3734168 D KEGG: syf:Synpcc7942_0180 hypothetical protein; hypothetical protein 3733338..3734168 Shewanella putrefaciens CN-32 5080150 YP_001184719.1 CDS Sputcn32_3208 NC_009438.1 3734528 3734956 D hypothetical protein 3734528..3734956 Shewanella putrefaciens CN-32 5080151 YP_001184720.1 CDS Sputcn32_3209 NC_009438.1 3735349 3738237 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3735349..3738237) Shewanella putrefaciens CN-32 5080152 YP_001184721.1 CDS Sputcn32_3210 NC_009438.1 3738360 3738749 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3738360..3738749) Shewanella putrefaciens CN-32 5080153 YP_001184722.1 CDS gcvT NC_009438.1 3738775 3739869 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3738775..3739869) Shewanella putrefaciens CN-32 5080154 YP_001184723.1 CDS Sputcn32_3212 NC_009438.1 3740124 3741347 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(3740124..3741347) Shewanella putrefaciens CN-32 5080155 YP_001184724.1 CDS Sputcn32_3213 NC_009438.1 3741390 3742628 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: she:Shewmr4_3333 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase complement(3741390..3742628) Shewanella putrefaciens CN-32 5080156 YP_001184725.1 CDS Sputcn32_3214 NC_009438.1 3742752 3743387 R TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: shm:Shewmr7_0619 YecA family protein; yecA family protein complement(3742752..3743387) Shewanella putrefaciens CN-32 5080157 YP_001184726.1 CDS Sputcn32_3215 NC_009438.1 3743555 3743857 D PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; hypothetical protein 3743555..3743857 Shewanella putrefaciens CN-32 5080158 YP_001184727.1 CDS Sputcn32_3216 NC_009438.1 3744163 3744822 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: she:Shewmr4_3336 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 3744163..3744822 Shewanella putrefaciens CN-32 5080057 YP_001184728.1 CDS Sputcn32_3217 NC_009438.1 3744882 3745601 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase complement(3744882..3745601) Shewanella putrefaciens CN-32 5080058 YP_001184729.1 CDS Sputcn32_3218 NC_009438.1 3745869 3746267 D PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 3745869..3746267 Shewanella putrefaciens CN-32 5080059 YP_001184730.1 CDS Sputcn32_3219 NC_009438.1 3746359 3747294 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3746359..3747294) Shewanella putrefaciens CN-32 5080060 YP_001184731.1 CDS Sputcn32_3220 NC_009438.1 3747578 3748048 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3747578..3748048 Shewanella putrefaciens CN-32 5080061 YP_001184732.1 CDS Sputcn32_3221 NC_009438.1 3748180 3748812 R PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: shm:Shewmr7_0612 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3748180..3748812) Shewanella putrefaciens CN-32 5080062 YP_001184733.1 CDS Sputcn32_3222 NC_009438.1 3748919 3749827 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0611 transcriptional regulator, LysR family; LysR family transcriptional regulator 3748919..3749827 Shewanella putrefaciens CN-32 5080063 YP_001184734.1 CDS Sputcn32_3223 NC_009438.1 3749900 3750835 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein complement(3749900..3750835) Shewanella putrefaciens CN-32 5080064 YP_001184735.1 CDS Sputcn32_3224 NC_009438.1 3751082 3752794 R KEGG: shm:Shewmr7_0609 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(3751082..3752794) Shewanella putrefaciens CN-32 5080065 YP_001184736.1 CDS Sputcn32_3225 NC_009438.1 3752970 3754019 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0608 ABC transporter related; ABC transporter-like protein complement(3752970..3754019) Shewanella putrefaciens CN-32 5080066 YP_001184737.1 CDS Sputcn32_3226 NC_009438.1 3754016 3755650 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3754016..3755650) Shewanella putrefaciens CN-32 5080067 YP_001184738.1 CDS Sputcn32_3227 NC_009438.1 3755728 3756735 R PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein complement(3755728..3756735) Shewanella putrefaciens CN-32 5080068 YP_001184739.1 CDS Sputcn32_3228 NC_009438.1 3756951 3757367 D KEGG: shm:Shewmr7_0605 hypothetical protein; hypothetical protein 3756951..3757367 Shewanella putrefaciens CN-32 5080069 YP_001184740.1 CDS Sputcn32_3229 NC_009438.1 3757379 3757975 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: shm:Shewmr7_0604 glutathione S-transferase, N-terminal domain protein; glutathione S-transferase domain-containing protein complement(3757379..3757975) Shewanella putrefaciens CN-32 5080070 YP_001184741.1 CDS Sputcn32_3230 NC_009438.1 3758075 3758824 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(3758075..3758824) Shewanella putrefaciens CN-32 5080071 YP_001184742.1 CDS Sputcn32_3231 NC_009438.1 3758994 3759599 R KEGG: son:SO0748 hypothetical protein; hypothetical protein complement(3758994..3759599) Shewanella putrefaciens CN-32 5080072 YP_001184743.1 CDS Sputcn32_3232 NC_009438.1 3759795 3760400 D PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase 3759795..3760400 Shewanella putrefaciens CN-32 5080073 YP_001184744.1 CDS Sputcn32_3233 NC_009438.1 3760412 3761902 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: shm:Shewmr7_0600 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 3760412..3761902 Shewanella putrefaciens CN-32 5080074 YP_001184745.1 CDS Sputcn32_3234 NC_009438.1 3762052 3762261 D KEGG: son:SO0752 hypothetical protein; hypothetical protein 3762052..3762261 Shewanella putrefaciens CN-32 5080075 YP_001184746.1 CDS Sputcn32_3235 NC_009438.1 3762305 3762562 R KEGG: shm:Shewmr7_0598 hypothetical protein; hypothetical protein complement(3762305..3762562) Shewanella putrefaciens CN-32 5080076 YP_001184747.1 CDS Sputcn32_3236 NC_009438.1 3762642 3764438 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3762642..3764438) Shewanella putrefaciens CN-32 5080077 YP_001184748.1 CDS Sputcn32_3237 NC_009438.1 3764885 3765064 D KEGG: shm:Shewmr7_0596 hypothetical protein; hypothetical protein 3764885..3765064 Shewanella putrefaciens CN-32 5080078 YP_001184749.1 CDS Sputcn32_3238 NC_009438.1 3765112 3766167 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3765112..3766167) Shewanella putrefaciens CN-32 5080079 YP_001184750.1 CDS Sputcn32_3239 NC_009438.1 3766455 3766784 R KEGG: shm:Shewmr7_0593 hypothetical protein; hypothetical protein complement(3766455..3766784) Shewanella putrefaciens CN-32 5080080 YP_001184751.1 CDS Sputcn32_3240 NC_009438.1 3766950 3768200 R PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0592 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter complement(3766950..3768200) Shewanella putrefaciens CN-32 5080081 YP_001184752.1 CDS Sputcn32_3241 NC_009438.1 3768211 3768549 R PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II complement(3768211..3768549) Shewanella putrefaciens CN-32 5080082 YP_001184753.1 CDS Sputcn32_3242 NC_009438.1 3768845 3769387 D PFAM: isochorismatase hydrolase; KEGG: she:Shewmr4_3363 isochorismatase hydrolase; isochorismatase hydrolase 3768845..3769387 Shewanella putrefaciens CN-32 5080083 YP_001184754.1 CDS Sputcn32_3243 NC_009438.1 3769553 3769804 D KEGG: shm:Shewmr7_0573 hypothetical protein; hypothetical protein 3769553..3769804 Shewanella putrefaciens CN-32 5080084 YP_001184755.1 CDS Sputcn32_3244 NC_009438.1 3769859 3771223 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bbr:BB1960 hypothetical protein; diguanylate cyclase 3769859..3771223 Shewanella putrefaciens CN-32 5080085 YP_001184756.1 CDS Sputcn32_3245 NC_009438.1 3771220 3771813 R PFAM: FxsA cytoplasmic membrane protein; KEGG: shm:Shewmr7_0548 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein complement(3771220..3771813) Shewanella putrefaciens CN-32 5080086 YP_001184757.1 CDS Sputcn32_3246 NC_009438.1 3772066 3772389 D PFAM: CutA1 divalent ion tolerance protein; KEGG: shm:Shewmr7_0547 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 3772066..3772389 Shewanella putrefaciens CN-32 5080087 YP_001184758.1 CDS dipZ NC_009438.1 3772386 3774200 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 3772386..3774200 Shewanella putrefaciens CN-32 5080088 YP_001184759.1 CDS Sputcn32_3248 NC_009438.1 3774394 3776037 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger 3774394..3776037 Shewanella putrefaciens CN-32 5080089 YP_001184760.1 CDS Sputcn32_3249 NC_009438.1 3776287 3777432 D KEGG: she:Shewmr4_3408 galactokinase; TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; galactokinase 3776287..3777432 Shewanella putrefaciens CN-32 5080090 YP_001184761.1 CDS Sputcn32_3250 NC_009438.1 3777461 3778495 D PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 3777461..3778495 Shewanella putrefaciens CN-32 5080091 YP_001184762.1 CDS Sputcn32_3251 NC_009438.1 3778612 3779016 R KEGG: son:SO0691 hypothetical protein; hypothetical protein complement(3778612..3779016) Shewanella putrefaciens CN-32 5080092 YP_001184763.1 CDS Sputcn32_3252 NC_009438.1 3779355 3780356 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(3779355..3780356) Shewanella putrefaciens CN-32 5080093 YP_001184764.1 CDS Sputcn32_3253 NC_009438.1 3780567 3782420 R KEGG: son:SO4013 hypothetical protein; hypothetical protein complement(3780567..3782420) Shewanella putrefaciens CN-32 5080094 YP_001184765.1 CDS Sputcn32_3254 NC_009438.1 3782592 3785690 R PFAM: acriflavin resistance protein; KEGG: son:SO4014 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(3782592..3785690) Shewanella putrefaciens CN-32 5080095 YP_001184766.1 CDS Sputcn32_3255 NC_009438.1 3785690 3786856 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4015 hypothetical protein; RND family efflux transporter MFP subunit complement(3785690..3786856) Shewanella putrefaciens CN-32 5080096 YP_001184767.1 CDS Sputcn32_3256 NC_009438.1 3787150 3788490 R PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; protein kinase complement(3787150..3788490) Shewanella putrefaciens CN-32 5080097 YP_001184768.1 CDS Sputcn32_3257 NC_009438.1 3788677 3790092 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family; lytic transglycosylase, catalytic 3788677..3790092 Shewanella putrefaciens CN-32 5080098 YP_001184769.1 CDS Sputcn32_3258 NC_009438.1 3790175 3791545 R KEGG: she:Shewmr4_3415 hypothetical protein; hypothetical protein complement(3790175..3791545) Shewanella putrefaciens CN-32 5080099 YP_001184770.1 CDS Sputcn32_3259 NC_009438.1 3791917 3794619 D KEGG: son:SO4019 hypothetical protein; hypothetical protein 3791917..3794619 Shewanella putrefaciens CN-32 5080100 YP_001184771.1 CDS Sputcn32_3260 NC_009438.1 3794746 3795444 R PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VFA0653 IAA acetyltransferase; N-acetyltransferase GCN5 complement(3794746..3795444) Shewanella putrefaciens CN-32 5080101 YP_001184772.1 CDS Sputcn32_3261 NC_009438.1 3795469 3795891 R KEGG: son:SO4020 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3795469..3795891) Shewanella putrefaciens CN-32 5080102 YP_001184773.1 CDS Sputcn32_3262 NC_009438.1 3796179 3799025 R PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family; peptidase M16 domain-containing protein complement(3796179..3799025) Shewanella putrefaciens CN-32 5080103 YP_001184774.1 CDS Sputcn32_3263 NC_009438.1 3799154 3799996 R hypothetical protein complement(3799154..3799996) Shewanella putrefaciens CN-32 5080104 YP_001184775.1 CDS Sputcn32_3264 NC_009438.1 3799984 3801057 R KEGG: wsu:WS1457 hypothetical protein; hypothetical protein complement(3799984..3801057) Shewanella putrefaciens CN-32 5080105 YP_001184776.1 CDS Sputcn32_3265 NC_009438.1 3801130 3801867 R PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein complement(3801130..3801867) Shewanella putrefaciens CN-32 5080106 YP_001184777.1 CDS Sputcn32_3266 NC_009438.1 3802187 3802717 R PFAM: protein of unknown function DUF1566; KEGG: pat:Patl_3291 protein of unknown function DUF1566; hypothetical protein complement(3802187..3802717) Shewanella putrefaciens CN-32 5080107 YP_001184778.1 CDS Sputcn32_3267 NC_009438.1 3802851 3806222 R PFAM: PKD domain containing protein; protein of unknown function DUF1566; KEGG: pat:Patl_3292 protein of unknown function DUF1566; hypothetical protein complement(3802851..3806222) Shewanella putrefaciens CN-32 5078336 YP_001184779.1 CDS Sputcn32_3268 NC_009438.1 3806225 3807502 R KEGG: mhu:Mhun_1163 PKD; hypothetical protein complement(3806225..3807502) Shewanella putrefaciens CN-32 5078337 YP_001184780.1 CDS Sputcn32_3269 NC_009438.1 3807885 3809363 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0964 hypothetical protein; diguanylate cyclase 3807885..3809363 Shewanella putrefaciens CN-32 5078338 YP_001184781.1 CDS Sputcn32_3270 NC_009438.1 3809341 3810975 R PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cps:CPS_0756 sensory box sensor histidine kinase/DNA-binding response regulator, AraC family; response regulator receiver protein complement(3809341..3810975) Shewanella putrefaciens CN-32 5078339 YP_001184782.1 CDS Sputcn32_3271 NC_009438.1 3811139 3811675 R KEGG: she:Shewmr4_3418 hypothetical protein; hypothetical protein complement(3811139..3811675) Shewanella putrefaciens CN-32 5078340 YP_001184783.1 CDS Sputcn32_3272 NC_009438.1 3811899 3812336 R PFAM: Stringent starvation protein B; KEGG: shm:Shewmr7_3424 stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(3811899..3812336) Shewanella putrefaciens CN-32 5078341 YP_001184784.1 CDS sspA NC_009438.1 3812336 3812965 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3812336..3812965) Shewanella putrefaciens CN-32 5078342 YP_001184785.1 CDS Sputcn32_3274 NC_009438.1 3813062 3813760 R PFAM: cytochrome c1; KEGG: shm:Shewmr7_3426 cytochrome c1; cytochrome c1 complement(3813062..3813760) Shewanella putrefaciens CN-32 5078343 YP_001184786.1 CDS Sputcn32_3275 NC_009438.1 3813760 3814974 R PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein complement(3813760..3814974) Shewanella putrefaciens CN-32 5078344 YP_001184787.1 CDS Sputcn32_3276 NC_009438.1 3814974 3815564 R KEGG: shm:Shewmr7_3428 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(3814974..3815564) Shewanella putrefaciens CN-32 5078345 YP_001184788.1 CDS Sputcn32_3277 NC_009438.1 3815928 3816821 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: shm:Shewmr7_3429 HflC protein; HflC protein complement(3815928..3816821) Shewanella putrefaciens CN-32 5078346 YP_001184789.1 CDS Sputcn32_3278 NC_009438.1 3816825 3817967 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: she:Shewmr4_0600 HflK protein; HflK protein complement(3816825..3817967) Shewanella putrefaciens CN-32 5078347 YP_001184790.1 CDS Sputcn32_3279 NC_009438.1 3818004 3819311 R PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein complement(3818004..3819311) Shewanella putrefaciens CN-32 5078348 YP_001184791.1 CDS Sputcn32_3280 NC_009438.1 3819335 3819607 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: shm:Shewmr7_3432 RNA chaperone Hfq; RNA chaperone Hfq complement(3819335..3819607) Shewanella putrefaciens CN-32 5078349 YP_001184792.1 CDS miaA NC_009438.1 3819698 3820612 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(3819698..3820612) Shewanella putrefaciens CN-32 5078350 YP_001184793.1 CDS mutL NC_009438.1 3820628 3822553 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(3820628..3822553) Shewanella putrefaciens CN-32 5078351 YP_001184794.1 CDS Sputcn32_3283 NC_009438.1 3822555 3823985 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: she:Shewmr4_0595 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(3822555..3823985) Shewanella putrefaciens CN-32 5078352 YP_001184795.1 CDS Sputcn32_3284 NC_009438.1 3823994 3824452 R PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein complement(3823994..3824452) Shewanella putrefaciens CN-32 5078353 YP_001184796.1 CDS Sputcn32_3285 NC_009438.1 3824541 3826040 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: she:Shewmr4_0593 carbohydrate kinase, YjeF related protein; carbohydrate kinase complement(3824541..3826040) Shewanella putrefaciens CN-32 5078354 YP_001184797.1 CDS Sputcn32_3286 NC_009438.1 3826334 3826789 R KEGG: shm:Shewmr7_3438 hypothetical protein; hypothetical protein complement(3826334..3826789) Shewanella putrefaciens CN-32 5078355 YP_001184798.1 CDS Sputcn32_3287 NC_009438.1 3828585 3829130 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3828585..3829130) Shewanella putrefaciens CN-32 5078360 YP_001184799.1 CDS Sputcn32_3288 NC_009438.1 3829243 3830307 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3829243..3830307 Shewanella putrefaciens CN-32 5078361 YP_001184800.1 CDS psd NC_009438.1 3830375 3831244 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3830375..3831244 Shewanella putrefaciens CN-32 5078362 YP_001184801.1 CDS Sputcn32_3290 NC_009438.1 3831260 3832144 D PFAM: protein of unknown function DUF6, transmembrane; UAA transporter; KEGG: shm:Shewmr7_3442 protein of unknown function DUF6, transmembrane; hypothetical protein 3831260..3832144 Shewanella putrefaciens CN-32 5078363 YP_001184802.1 CDS Sputcn32_3291 NC_009438.1 3832214 3835420 D PFAM: MscS Mechanosensitive ion channel; KEGG: she:Shewmr4_0587 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3832214..3835420 Shewanella putrefaciens CN-32 5078364 YP_001184803.1 CDS Sputcn32_3292 NC_009438.1 3835435 3836157 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: shm:Shewmr7_3444 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3835435..3836157 Shewanella putrefaciens CN-32 5078365 YP_001184804.1 CDS Sputcn32_3293 NC_009438.1 3836173 3836508 R KEGG: shm:Shewmr7_3445 hypothetical protein; hypothetical protein complement(3836173..3836508) Shewanella putrefaciens CN-32 5078366 YP_001184805.1 CDS Sputcn32_3294 NC_009438.1 3836905 3838479 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: shm:Shewmr7_3447 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer complement(3836905..3838479) Shewanella putrefaciens CN-32 5078367 YP_001184806.1 CDS Sputcn32_3295 NC_009438.1 3838730 3838921 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: she:Shewmr4_0582 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 3838730..3838921 Shewanella putrefaciens CN-32 5078368 YP_001184807.1 CDS Sputcn32_3296 NC_009438.1 3839176 3839832 R catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase complement(3839176..3839832) Shewanella putrefaciens CN-32 5078369 YP_001184808.1 CDS Sputcn32_3297 NC_009438.1 3839936 3840277 R KEGG: she:Shewmr4_0580 hypothetical protein; hypothetical protein complement(3839936..3840277) Shewanella putrefaciens CN-32 5078370 YP_001184809.1 CDS Sputcn32_3298 NC_009438.1 3840526 3842334 D PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: shm:Shewmr7_3451 serine/threonine protein kinase; protein kinase 3840526..3842334 Shewanella putrefaciens CN-32 5078371 YP_001184810.1 CDS Sputcn32_3299 NC_009438.1 3842363 3844765 R KEGG: son:SO0578 hypothetical protein; hypothetical protein complement(3842363..3844765) Shewanella putrefaciens CN-32 5078372 YP_001184811.1 CDS Sputcn32_3300 NC_009438.1 3844834 3848538 R KEGG: she:Shewmr4_0577 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(3844834..3848538) Shewanella putrefaciens CN-32 5078373 YP_001184812.1 CDS Sputcn32_3301 NC_009438.1 3848750 3850144 R PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: shm:Shewmr7_3454 PhoH family protein; PhoH family protein complement(3848750..3850144) Shewanella putrefaciens CN-32 5078374 YP_001184813.1 CDS Sputcn32_3302 NC_009438.1 3850547 3853453 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 3850547..3853453 Shewanella putrefaciens CN-32 5078375 YP_001184814.1 CDS Sputcn32_3303 NC_009438.1 3853623 3854507 D KEGG: son:SO0573 hypothetical protein; hypothetical protein 3853623..3854507 Shewanella putrefaciens CN-32 5078376 YP_001184815.1 CDS Sputcn32_3304 NC_009438.1 3854566 3855372 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3854566..3855372) Shewanella putrefaciens CN-32 5078377 YP_001184816.1 CDS Sputcn32_3305 NC_009438.1 3855891 3856886 D PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; CheC, inhibitor of MCP methylation 3855891..3856886 Shewanella putrefaciens CN-32 5078378 YP_001184817.1 CDS Sputcn32_3306 NC_009438.1 3856905 3857879 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_3459 diguanylate cyclase; diguanylate cyclase 3856905..3857879 Shewanella putrefaciens CN-32 5078379 YP_001184818.1 CDS Sputcn32_3307 NC_009438.1 3857951 3858355 R PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein complement(3857951..3858355) Shewanella putrefaciens CN-32 5078380 YP_001184819.1 CDS Sputcn32_3308 NC_009438.1 3858399 3859184 R KEGG: she:Shewmr4_0569 1-acyl-sn-glycerol-3-phosphate acyltransferases; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3858399..3859184) Shewanella putrefaciens CN-32 5078381 YP_001184820.1 CDS Sputcn32_3309 NC_009438.1 3859294 3860082 R PFAM: ABC-3 protein; KEGG: shm:Shewmr7_3462 ABC-3 protein; ABC-3 protein complement(3859294..3860082) Shewanella putrefaciens CN-32 5078382 YP_001184821.1 CDS Sputcn32_3310 NC_009438.1 3860088 3860996 R PFAM: periplasmic solute binding protein; KEGG: shm:Shewmr7_3463 periplasmic solute binding protein; periplasmic solute binding protein complement(3860088..3860996) Shewanella putrefaciens CN-32 5078383 YP_001184822.1 CDS Sputcn32_3311 NC_009438.1 3860980 3862164 R KEGG: shm:Shewmr7_3464 hypothetical protein; hypothetical protein complement(3860980..3862164) Shewanella putrefaciens CN-32 5078086 YP_001184823.1 CDS Sputcn32_3312 NC_009438.1 3862242 3862532 R KEGG: shm:Shewmr7_3465 hypothetical protein; hypothetical protein complement(3862242..3862532) Shewanella putrefaciens CN-32 5078087 YP_001184824.1 CDS Sputcn32_3313 NC_009438.1 3862819 3862944 D KEGG: she:Shewmr4_0564 hypothetical protein; hypothetical protein 3862819..3862944 Shewanella putrefaciens CN-32 5078088 YP_001184825.1 CDS Sputcn32_3314 NC_009438.1 3863119 3864831 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(3863119..3864831) Shewanella putrefaciens CN-32 5078089 YP_001184826.1 CDS Sputcn32_3315 NC_009438.1 3865006 3865836 R PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase complement(3865006..3865836) Shewanella putrefaciens CN-32 5078090 YP_001184827.1 CDS Sputcn32_3316 NC_009438.1 3866245 3867018 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase 3866245..3867018 Shewanella putrefaciens CN-32 5078091 YP_001184828.1 CDS Sputcn32_3317 NC_009438.1 3867043 3867942 R PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein complement(3867043..3867942) Shewanella putrefaciens CN-32 5078092 YP_001184829.1 CDS Sputcn32_3318 NC_009438.1 3867991 3868299 D KEGG: shm:Shewmr7_3474 hypothetical protein; hypothetical protein 3867991..3868299 Shewanella putrefaciens CN-32 5078093 YP_001184830.1 CDS Sputcn32_3319 NC_009438.1 3868463 3870217 D PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3475 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3868463..3870217 Shewanella putrefaciens CN-32 5078094 YP_001184831.1 CDS Sputcn32_3320 NC_009438.1 3870231 3870755 R KEGG: shm:Shewmr7_3476 hypothetical protein; hypothetical protein complement(3870231..3870755) Shewanella putrefaciens CN-32 5078095 YP_001184832.1 CDS Sputcn32_3321 NC_009438.1 3871028 3871336 D KEGG: shm:Shewmr7_3477 hypothetical protein; hypothetical protein 3871028..3871336 Shewanella putrefaciens CN-32 5078096 YP_001184833.1 CDS Sputcn32_3322 NC_009438.1 3871368 3871877 R KEGG: shm:Shewmr7_3479 hypothetical protein; hypothetical protein complement(3871368..3871877) Shewanella putrefaciens CN-32 5078097 YP_001184834.1 CDS Sputcn32_3323 NC_009438.1 3871922 3872386 D KEGG: son:SO0550 hypothetical protein; hypothetical protein 3871922..3872386 Shewanella putrefaciens CN-32 5078098 YP_001184835.1 CDS Sputcn32_3324 NC_009438.1 3872469 3873266 D PFAM: response regulator receiver; KEGG: shm:Shewmr7_3481 response regulator receiver protein; response regulator receiver protein 3872469..3873266 Shewanella putrefaciens CN-32 5078099 YP_001184836.1 CDS Sputcn32_3325 NC_009438.1 3873413 3873685 D PFAM: histone family protein DNA-binding protein; KEGG: she:Shewmr4_0548 histone family protein DNA-binding protein; histone family protein DNA-binding protein 3873413..3873685 Shewanella putrefaciens CN-32 5078100 YP_001184837.1 CDS Sputcn32_3326 NC_009438.1 3873983 3874675 D KEGG: she:Shewmr4_0547 hypothetical protein; hypothetical protein 3873983..3874675 Shewanella putrefaciens CN-32 5078101 YP_001184838.1 CDS Sputcn32_3327 NC_009438.1 3874756 3875661 R TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein; alpha-L-glutamate ligase complement(3874756..3875661) Shewanella putrefaciens CN-32 5078102 YP_001184839.1 CDS Sputcn32_3328 NC_009438.1 3875822 3877543 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(3875822..3877543) Shewanella putrefaciens CN-32 5078103 YP_001184840.1 CDS Sputcn32_3329 NC_009438.1 3877553 3877987 R PFAM: response regulator receiver; KEGG: she:Shewmr4_0544 response regulator receiver protein; response regulator receiver protein complement(3877553..3877987) Shewanella putrefaciens CN-32 5078104 YP_001184841.1 CDS Sputcn32_3330 NC_009438.1 3877984 3880137 R KEGG: she:Shewmr4_0543 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(3877984..3880137) Shewanella putrefaciens CN-32 5078105 YP_001184842.1 CDS Sputcn32_3331 NC_009438.1 3880446 3880622 D KEGG: shm:Shewmr7_3488 hypothetical protein; hypothetical protein 3880446..3880622 Shewanella putrefaciens CN-32 5078106 YP_001184843.1 CDS Sputcn32_3332 NC_009438.1 3881024 3882379 D PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein 3881024..3882379 Shewanella putrefaciens CN-32 5078107 YP_001184844.1 CDS Sputcn32_3333 NC_009438.1 3882455 3883831 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sdn:Sden_0649 amino acid carrier protein; amino acid carrier protein complement(3882455..3883831) Shewanella putrefaciens CN-32 5078108 YP_001184845.1 CDS Sputcn32_3334 NC_009438.1 3884078 3885514 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(3884078..3885514) Shewanella putrefaciens CN-32 5078109 YP_001184846.1 CDS Sputcn32_3335 NC_009438.1 3885639 3886484 R KEGG: son:SO0540 hypothetical protein; hypothetical protein complement(3885639..3886484) Shewanella putrefaciens CN-32 5078110 YP_001184847.1 CDS Sputcn32_3336 NC_009438.1 3886517 3886774 R KEGG: shm:Shewmr7_3496 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(3886517..3886774) Shewanella putrefaciens CN-32 5078111 YP_001184848.1 CDS Sputcn32_3337 NC_009438.1 3887094 3887420 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase complement(3887094..3887420) Shewanella putrefaciens CN-32 5078112 YP_001184849.1 CDS Sputcn32_3338 NC_009438.1 3887494 3887949 R PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_0525 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3887494..3887949) Shewanella putrefaciens CN-32 5078113 YP_001184850.1 CDS mscL NC_009438.1 3888148 3888558 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3888148..3888558 Shewanella putrefaciens CN-32 5078114 YP_001184851.1 CDS Sputcn32_3340 NC_009438.1 3888636 3888959 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0521 hypothetical protein; antibiotic biosynthesis monooxygenase complement(3888636..3888959) Shewanella putrefaciens CN-32 5078115 YP_001184852.1 CDS Sputcn32_3341 NC_009438.1 3889120 3892347 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: shm:Shewmr7_3513 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(3889120..3892347) Shewanella putrefaciens CN-32 5078116 YP_001184853.1 CDS Sputcn32_3342 NC_009438.1 3892377 3893642 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit complement(3892377..3893642) Shewanella putrefaciens CN-32 5078117 YP_001184854.1 CDS Sputcn32_3343 NC_009438.1 3893653 3895131 R KEGG: shm:Shewmr7_3515 outer membrane efflux protein; outer membrane efflux protein complement(3893653..3895131) Shewanella putrefaciens CN-32 5078118 YP_001184855.1 CDS Sputcn32_3344 NC_009438.1 3895462 3895905 R KEGG: she:Shewmr4_0515 hypothetical protein; hypothetical protein complement(3895462..3895905) Shewanella putrefaciens CN-32 5078119 YP_001184856.1 CDS Sputcn32_3345 NC_009438.1 3896111 3896317 R KEGG: shm:Shewmr7_3517 hypothetical protein; hypothetical protein complement(3896111..3896317) Shewanella putrefaciens CN-32 5078120 YP_001184857.1 CDS Sputcn32_3346 NC_009438.1 3896354 3896719 R KEGG: son:SO0514 hypothetical protein; hypothetical protein complement(3896354..3896719) Shewanella putrefaciens CN-32 5078121 YP_001184858.1 CDS Sputcn32_3347 NC_009438.1 3896856 3897287 D PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 3896856..3897287 Shewanella putrefaciens CN-32 5078122 YP_001184859.1 CDS Sputcn32_3348 NC_009438.1 3897406 3897840 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3897406..3897840 Shewanella putrefaciens CN-32 5078123 YP_001184860.1 CDS Sputcn32_3349 NC_009438.1 3897895 3898572 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: shm:Shewmr7_3522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3897895..3898572 Shewanella putrefaciens CN-32 5078124 YP_001184861.1 CDS Sputcn32_3350 NC_009438.1 3898635 3899309 R hypothetical protein complement(3898635..3899309) Shewanella putrefaciens CN-32 5078125 YP_001184862.1 CDS Sputcn32_3351 NC_009438.1 3899776 3900552 R KEGG: she:Shewmr4_0507 hypothetical protein; hypothetical protein complement(3899776..3900552) Shewanella putrefaciens CN-32 5078126 YP_001184863.1 CDS Sputcn32_3352 NC_009438.1 3900712 3902193 D TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: shm:Shewmr7_3525 UbiD family decarboxylases; UbiD family decarboxylase 3900712..3902193 Shewanella putrefaciens CN-32 5078127 YP_001184864.1 CDS fre NC_009438.1 3902306 3903004 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 3902306..3903004 Shewanella putrefaciens CN-32 5078128 YP_001184865.1 CDS Sputcn32_3354 NC_009438.1 3903741 3904847 R hypothetical protein complement(3903741..3904847) Shewanella putrefaciens CN-32 5078129 YP_001184866.1 CDS Sputcn32_3355 NC_009438.1 3905579 3906211 R KEGG: she:Shewmr4_0502 conserved hypothetical flavoprotein oxygenase; flavoprotein oxygenase complement(3905579..3906211) Shewanella putrefaciens CN-32 5078130 YP_001184867.1 CDS Sputcn32_3356 NC_009438.1 3906229 3907512 R PFAM: transcriptional regulator domain protein; KEGG: shm:Shewmr7_3532 transcriptional regulator, CadC; transcriptional regulator CadC complement(3906229..3907512) Shewanella putrefaciens CN-32 5078131 YP_001184868.1 CDS Sputcn32_3357 NC_009438.1 3907734 3908612 R KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease complement(3907734..3908612) Shewanella putrefaciens CN-32 5078132 YP_001184869.1 CDS Sputcn32_3358 NC_009438.1 3908609 3909643 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3908609..3909643) Shewanella putrefaciens CN-32 5078133 YP_001184870.1 CDS Sputcn32_3359 NC_009438.1 3909640 3910935 R PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein; periplasmic copper-binding protein complement(3909640..3910935) Shewanella putrefaciens CN-32 5078134 YP_001184871.1 CDS Sputcn32_3360 NC_009438.1 3910940 3911431 R PFAM: NosL family protein; KEGG: son:SO0485 NosL protein; NosL family protein complement(3910940..3911431) Shewanella putrefaciens CN-32 5078135 YP_001184872.1 CDS Sputcn32_3361 NC_009438.1 3911520 3912200 R KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; formate-dependent nitrite reductase complex subunit NrfG complement(3911520..3912200) Shewanella putrefaciens CN-32 5078136 YP_001184873.1 CDS Sputcn32_3362 NC_009438.1 3912235 3913017 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: she:Shewmr4_0490 FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type complement(3912235..3913017) Shewanella putrefaciens CN-32 5077984 YP_001184874.1 CDS Sputcn32_3363 NC_009438.1 3913103 3913543 R SMART: Rhodanese domain protein; KEGG: shm:Shewmr7_3541 rhodanese domain protein; rhodanese domain-containing protein complement(3913103..3913543) Shewanella putrefaciens CN-32 5077985 YP_001184875.1 CDS Sputcn32_3364 NC_009438.1 3913606 3915735 R KEGG: she:Shewmr4_0488 cytochrome c, putative; cytochrome c complement(3913606..3915735) Shewanella putrefaciens CN-32 5077986 YP_001184876.1 CDS Sputcn32_3365 NC_009438.1 3916280 3918409 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 3916280..3918409 Shewanella putrefaciens CN-32 5077987 YP_001184877.1 CDS Sputcn32_3366 NC_009438.1 3918409 3918828 D PFAM: cytochrome C biogenesis protein; KEGG: shm:Shewmr7_3544 cytochrome c biogenesis protein; cytochrome C biogenesis protein 3918409..3918828 Shewanella putrefaciens CN-32 5077988 YP_001184878.1 CDS Sputcn32_3367 NC_009438.1 3918845 3919429 D PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_3545 redoxin domain protein; redoxin domain-containing protein 3918845..3919429 Shewanella putrefaciens CN-32 5077989 YP_001184879.1 CDS Sputcn32_3368 NC_009438.1 3919605 3920183 D KEGG: son:SO0474 hypothetical protein; hypothetical protein 3919605..3920183 Shewanella putrefaciens CN-32 5077990 YP_001184880.1 CDS Sputcn32_3369 NC_009438.1 3920249 3920539 D KEGG: shm:Shewmr7_3550 putative mitomycin resistance protein; putative mitomycin resistance protein 3920249..3920539 Shewanella putrefaciens CN-32 5077991 YP_001184881.1 CDS Sputcn32_3370 NC_009438.1 3920543 3921625 R PFAM: protein of unknown function UPF0118; KEGG: she:Shewmr4_0479 protein of unknown function UPF0118; hypothetical protein complement(3920543..3921625) Shewanella putrefaciens CN-32 5077992 YP_001184882.1 CDS Sputcn32_3371 NC_009438.1 3921696 3922760 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: she:Shewmr4_0476 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(3921696..3922760) Shewanella putrefaciens CN-32 5077993 YP_001184883.1 CDS ubiA NC_009438.1 3922843 3923703 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(3922843..3923703) Shewanella putrefaciens CN-32 5077994 YP_001184884.1 CDS uvrD NC_009438.1 3923849 3926017 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(3923849..3926017) Shewanella putrefaciens CN-32 5077995 YP_001184885.1 CDS Sputcn32_3375 NC_009438.1 3926965 3928410 D KEGG: pst:PSPTO_0021 hypothetical protein; hypothetical protein 3926965..3928410 Shewanella putrefaciens CN-32 5077997 YP_001184886.1 CDS Sputcn32_3376 NC_009438.1 3928641 3931274 D PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: pst:PSPTO_0017 helicase/SNF2 family domain protein; helicase domain-containing protein 3928641..3931274 Shewanella putrefaciens CN-32 5077998 YP_001184887.1 CDS Sputcn32_3377 NC_009438.1 3931857 3933056 D KEGG: psb:Psyr_3988 hypothetical protein; hypothetical protein 3931857..3933056 Shewanella putrefaciens CN-32 5077999 YP_001184888.1 CDS Sputcn32_3378 NC_009438.1 3933082 3933519 R PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase complement(3933082..3933519) Shewanella putrefaciens CN-32 5078000 YP_001184889.1 CDS Sputcn32_3379 NC_009438.1 3933916 3935406 D PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: shm:Shewmr7_3566 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 3933916..3935406 Shewanella putrefaciens CN-32 5078001 YP_001184890.1 CDS Sputcn32_3380 NC_009438.1 3935721 3935843 D KEGG: shm:Shewmr7_3567 hypothetical protein; hypothetical protein 3935721..3935843 Shewanella putrefaciens CN-32 5078002 YP_001184891.1 CDS Sputcn32_3381 NC_009438.1 3936082 3937038 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: she:Shewmr4_0461 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 3936082..3937038 Shewanella putrefaciens CN-32 5078003 YP_001184892.1 CDS Sputcn32_3382 NC_009438.1 3937142 3939175 D TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_0460 TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein 3937142..3939175 Shewanella putrefaciens CN-32 5078004 YP_001184893.1 CDS Sputcn32_3383 NC_009438.1 3939221 3939625 D KEGG: she:Shewmr4_0459 hypothetical protein; hypothetical protein 3939221..3939625 Shewanella putrefaciens CN-32 5078005 YP_001184894.1 CDS Sputcn32_3384 NC_009438.1 3939622 3940341 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_2789 regulatory protein GntR, HTH; regulatory protein GntR complement(3939622..3940341) Shewanella putrefaciens CN-32 5078006 YP_001184895.1 CDS Sputcn32_3385 NC_009438.1 3940625 3941863 D PFAM: outer membrane porin; KEGG: shm:Shewmr7_2788 outer membrane porin; outer membrane porin 3940625..3941863 Shewanella putrefaciens CN-32 5078007 YP_001184896.1 CDS Sputcn32_3386 NC_009438.1 3942003 3943739 D PFAM: Tannase and feruloyl esterase; KEGG: sfr:Sfri_3696 feruloyl esterase; tannase and feruloyl esterase 3942003..3943739 Shewanella putrefaciens CN-32 5078008 YP_001184897.1 CDS Sputcn32_3387 NC_009438.1 3944294 3945967 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sfr:Sfri_3694 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3944294..3945967 Shewanella putrefaciens CN-32 5078009 YP_001184898.1 CDS Sputcn32_3388 NC_009438.1 3946036 3946386 D KEGG: shm:Shewmr7_2786 hypothetical protein; hypothetical protein 3946036..3946386 Shewanella putrefaciens CN-32 5078010 YP_001184899.1 CDS Sputcn32_3389 NC_009438.1 3946714 3946929 R hypothetical protein complement(3946714..3946929) Shewanella putrefaciens CN-32 5078011 YP_001184900.1 CDS Sputcn32_3390 NC_009438.1 3947252 3948226 R KEGG: she:Shewmr4_0458 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(3947252..3948226) Shewanella putrefaciens CN-32 5078012 YP_001184901.1 CDS Sputcn32_3391 NC_009438.1 3948388 3948723 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type complement(3948388..3948723) Shewanella putrefaciens CN-32 5078013 YP_001184902.1 CDS Sputcn32_3392 NC_009438.1 3948848 3949384 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin 3948848..3949384 Shewanella putrefaciens CN-32 5078014 YP_001184903.1 CDS Sputcn32_3393 NC_009438.1 3949466 3950866 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: she:Shewmr4_0455 anion transporter; anion transporter complement(3949466..3950866) Shewanella putrefaciens CN-32 5078015 YP_001184904.1 CDS Sputcn32_3394 NC_009438.1 3951459 3952625 D PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0452 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3951459..3952625 Shewanella putrefaciens CN-32 5078016 YP_001184905.1 CDS Sputcn32_3395 NC_009438.1 3952702 3954324 R PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_3578 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(3952702..3954324) Shewanella putrefaciens CN-32 5078017 YP_001184906.1 CDS Sputcn32_3396 NC_009438.1 3954330 3954620 R KEGG: son:SO0448 hypothetical protein; hypothetical protein complement(3954330..3954620) Shewanella putrefaciens CN-32 5078018 YP_001184907.1 CDS Sputcn32_3397 NC_009438.1 3954624 3954881 R KEGG: son:SO0447 hypothetical protein; hypothetical protein complement(3954624..3954881) Shewanella putrefaciens CN-32 5078019 YP_001184908.1 CDS Sputcn32_3398 NC_009438.1 3955285 3956172 D PFAM: band 7 protein; KEGG: shm:Shewmr7_3581 band 7 protein; hypothetical protein 3955285..3956172 Shewanella putrefaciens CN-32 5078020 YP_001184909.1 CDS Sputcn32_3399 NC_009438.1 3956291 3957778 R PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease complement(3956291..3957778) Shewanella putrefaciens CN-32 5078021 YP_001184910.1 CDS zntR NC_009438.1 3957781 3958251 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3957781..3958251) Shewanella putrefaciens CN-32 5078022 YP_001184911.1 CDS purH NC_009438.1 3958589 3960220 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3958589..3960220 Shewanella putrefaciens CN-32 5078023 YP_001184912.1 CDS Sputcn32_3402 NC_009438.1 3960291 3961589 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 3960291..3961589 Shewanella putrefaciens CN-32 5078024 YP_001184913.1 CDS Sputcn32_3403 NC_009438.1 3961773 3962000 D KEGG: shm:Shewmr7_3587 hypothetical protein; hypothetical protein 3961773..3962000 Shewanella putrefaciens CN-32 5078025 YP_001184914.1 CDS Sputcn32_3404 NC_009438.1 3962004 3962807 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: shm:Shewmr7_3588 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(3962004..3962807) Shewanella putrefaciens CN-32 5078026 YP_001184915.1 CDS Sputcn32_3405 NC_009438.1 3962884 3965463 R KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(3962884..3965463) Shewanella putrefaciens CN-32 5078027 YP_001184916.1 CDS hemE NC_009438.1 3965776 3966840 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(3965776..3966840) Shewanella putrefaciens CN-32 5078028 YP_001184917.1 CDS Sputcn32_3407 NC_009438.1 3966821 3967225 R hypothetical protein complement(3966821..3967225) Shewanella putrefaciens CN-32 5078029 YP_001184918.1 CDS Sputcn32_3408 NC_009438.1 3967286 3967783 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 3967286..3967783 Shewanella putrefaciens CN-32 5078030 YP_001184919.1 CDS Sputcn32_3409 NC_009438.1 3967862 3970459 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(3967862..3970459) Shewanella putrefaciens CN-32 5078031 YP_001184920.1 CDS Sputcn32_3410 NC_009438.1 3970895 3971548 D YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 3970895..3971548 Shewanella putrefaciens CN-32 5078032 YP_001184921.1 CDS Sputcn32_3411 NC_009438.1 3971603 3971929 D KEGG: son:SO0430 hypothetical protein; hypothetical protein 3971603..3971929 Shewanella putrefaciens CN-32 5078033 YP_001184922.1 CDS Sputcn32_3412 NC_009438.1 3971978 3974020 R PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family; endothelin-converting protein 1 complement(3971978..3974020) Shewanella putrefaciens CN-32 5078034 YP_001184923.1 CDS Sputcn32_3413 NC_009438.1 3974221 3976437 R PFAM: surface antigen (D15); Patatin; KEGG: she:Shewmr4_0432 patatin; patatin complement(3974221..3976437) Shewanella putrefaciens CN-32 5078035 YP_001184924.1 CDS Sputcn32_3415 NC_009438.1 3981125 3982552 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3981125..3982552) Shewanella putrefaciens CN-32 5079806 YP_001184925.1 CDS Sputcn32_3416 NC_009438.1 3982700 3984709 R KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase complement(3982700..3984709) Shewanella putrefaciens CN-32 5079807 YP_001184926.1 CDS aceE NC_009438.1 3984722 3987388 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(3984722..3987388) Shewanella putrefaciens CN-32 5079808 YP_001184927.1 CDS pdhR NC_009438.1 3987471 3988223 R activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR complement(3987471..3988223) Shewanella putrefaciens CN-32 5079809 YP_001184928.1 CDS Sputcn32_3419 NC_009438.1 3988733 3989584 R involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE complement(3988733..3989584) Shewanella putrefaciens CN-32 5079810 YP_001184929.1 CDS Sputcn32_3420 NC_009438.1 3989784 3990326 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase complement(3989784..3990326) Shewanella putrefaciens CN-32 5079811 YP_001184930.1 CDS Sputcn32_3421 NC_009438.1 3990645 3991532 D KEGG: shm:Shewmr7_3603 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 3990645..3991532 Shewanella putrefaciens CN-32 5079812 YP_001184931.1 CDS Sputcn32_3422 NC_009438.1 3992452 3992898 D PFAM: Fimbrial protein pilin; KEGG: dar:Daro_3356 fimbrial protein pilin:bacterial general secretion pathway protein H; fimbrial protein pilin 3992452..3992898 Shewanella putrefaciens CN-32 5079813 YP_001184932.1 CDS Sputcn32_3423 NC_009438.1 3992982 3994691 D TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB 3992982..3994691 Shewanella putrefaciens CN-32 5079814 YP_001184933.1 CDS Sputcn32_3424 NC_009438.1 3995142 3996407 D PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein; type II secretion system protein 3995142..3996407 Shewanella putrefaciens CN-32 5079815 YP_001184934.1 CDS Sputcn32_3425 NC_009438.1 3996607 3997533 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase) / N-methyltransferase; prepilin peptidase 3996607..3997533 Shewanella putrefaciens CN-32 5079816 YP_001184935.1 CDS coaE NC_009438.1 3997877 3998494 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3997877..3998494 Shewanella putrefaciens CN-32 5079817 YP_001184936.1 CDS Sputcn32_3427 NC_009438.1 3998487 3999221 D PFAM: protein of unknown function DUF1342; KEGG: she:Shewmr4_0416 protein of unknown function DUF1342; hypothetical protein 3998487..3999221 Shewanella putrefaciens CN-32 5079818 YP_001184937.1 CDS Sputcn32_3428 NC_009438.1 3999379 3999588 D PFAM: protein of unknown function DUF329; KEGG: shm:Shewmr7_3610 protein of unknown function DUF329; hypothetical protein 3999379..3999588 Shewanella putrefaciens CN-32 5079819 YP_001184938.1 CDS Sputcn32_3429 NC_009438.1 3999640 4000044 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: she:Shewmr4_0414 mutator MutT protein; mutator MutT protein 3999640..4000044 Shewanella putrefaciens CN-32 5079820 YP_001184939.1 CDS Sputcn32_3430 NC_009438.1 4000551 4001087 D KEGG: shm:Shewmr7_3612 hypothetical protein; hypothetical protein 4000551..4001087 Shewanella putrefaciens CN-32 5079821 YP_001184940.1 CDS Sputcn32_3431 NC_009438.1 4001499 4002425 R PFAM: Ppx/GppA phosphatase; KEGG: shm:Shewmr7_3613 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(4001499..4002425) Shewanella putrefaciens CN-32 5079822 YP_001184941.1 CDS Sputcn32_3432 NC_009438.1 4002426 4003745 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4002426..4003745) Shewanella putrefaciens CN-32 5079823 YP_001184942.1 CDS Sputcn32_3433 NC_009438.1 4003898 4004224 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: shm:Shewmr7_3615 thioredoxin; thioredoxin 4003898..4004224 Shewanella putrefaciens CN-32 5079824 YP_001184943.1 CDS rho NC_009438.1 4004437 4005702 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4004437..4005702 Shewanella putrefaciens CN-32 5079825 YP_001184944.1 CDS Sputcn32_3435 NC_009438.1 4005754 4006680 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: she:Shewmr4_0408 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4005754..4006680) Shewanella putrefaciens CN-32 5079826 YP_001184945.1 CDS Sputcn32_3436 NC_009438.1 4006815 4007837 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: shm:Shewmr7_3618 NADPH:quinone reductase; alcohol dehydrogenase 4006815..4007837 Shewanella putrefaciens CN-32 5079827 YP_001184946.1 CDS Sputcn32_3437 NC_009438.1 4007834 4008118 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: she:Shewmr4_0406 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4007834..4008118 Shewanella putrefaciens CN-32 5079828 YP_001184947.1 CDS frdB NC_009438.1 4008169 4008900 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(4008169..4008900) Shewanella putrefaciens CN-32 5079829 YP_001184948.1 CDS Sputcn32_3439 NC_009438.1 4008900 4010906 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(4008900..4010906) Shewanella putrefaciens CN-32 5079830 YP_001184949.1 CDS Sputcn32_3440 NC_009438.1 4010992 4011663 R PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: she:Shewmr4_0403 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex, transmembrane subunit complement(4010992..4011663) Shewanella putrefaciens CN-32 5079831 YP_001184950.1 CDS Sputcn32_3441 NC_009438.1 4011845 4012570 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(4011845..4012570) Shewanella putrefaciens CN-32 5079832 YP_001184951.1 CDS prmA NC_009438.1 4013025 4013906 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 4013025..4013906 Shewanella putrefaciens CN-32 5079833 YP_001184952.1 CDS Sputcn32_3443 NC_009438.1 4014081 4015049 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein 4014081..4015049 Shewanella putrefaciens CN-32 5079834 YP_001184953.1 CDS fis NC_009438.1 4015066 4015371 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 4015066..4015371 Shewanella putrefaciens CN-32 5079835 YP_001184954.1 CDS Sputcn32_3445 NC_009438.1 4015521 4015808 R KEGG: sdn:Sden_3629 hypothetical protein; hypothetical protein complement(4015521..4015808) Shewanella putrefaciens CN-32 5079836 YP_001184955.1 CDS Sputcn32_3446 NC_009438.1 4015817 4016251 R PFAM: type IV pilus assembly PilZ; KEGG: sdn:Sden_3630 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(4015817..4016251) Shewanella putrefaciens CN-32 5079837 YP_001184956.1 CDS Sputcn32_3447 NC_009438.1 4016286 4017203 R PFAM: OmpA/MotB domain protein; KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB domain-containing protein complement(4016286..4017203) Shewanella putrefaciens CN-32 5079838 YP_001184957.1 CDS Sputcn32_3448 NC_009438.1 4017203 4018060 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(4017203..4018060) Shewanella putrefaciens CN-32 5079839 YP_001184958.1 CDS fliA NC_009438.1 4018083 4018799 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(4018083..4018799) Shewanella putrefaciens CN-32 5079840 YP_001184959.1 CDS Sputcn32_3450 NC_009438.1 4018809 4019276 R PFAM: flagellar basal body-associated protein FliL; KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(4018809..4019276) Shewanella putrefaciens CN-32 5079841 YP_001184960.1 CDS Sputcn32_3451 NC_009438.1 4019292 4020473 R PFAM: flagellar hook-length control protein; KEGG: sdn:Sden_3635 flagellar hook-length control protein; flagellar hook-length control protein complement(4019292..4020473) Shewanella putrefaciens CN-32 5079842 YP_001184961.1 CDS Sputcn32_3452 NC_009438.1 4020463 4020789 R KEGG: sdn:Sden_3636 hypothetical protein; hypothetical protein complement(4020463..4020789) Shewanella putrefaciens CN-32 5079843 YP_001184962.1 CDS Sputcn32_3453 NC_009438.1 4020758 4021138 R PFAM: flagellar protein FliS; KEGG: sdn:Sden_3637 flagellar protein FliS; flagellar protein FliS complement(4020758..4021138) Shewanella putrefaciens CN-32 5079844 YP_001184963.1 CDS Sputcn32_3454 NC_009438.1 4021152 4022498 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: sdn:Sden_3638 flagellar hook-associated 2-like protein; flagellar hook-associated 2 domain-containing protein complement(4021152..4022498) Shewanella putrefaciens CN-32 5079845 YP_001184964.1 CDS Sputcn32_3455 NC_009438.1 4022795 4023607 R PFAM: flagellin domain protein; KEGG: sdn:Sden_3639 flagellin-like protein; flagellin domain-containing protein complement(4022795..4023607) Shewanella putrefaciens CN-32 5079846 YP_001184965.1 CDS Sputcn32_3456 NC_009438.1 4023845 4024648 R PFAM: flagellin domain protein; KEGG: sdn:Sden_3639 flagellin-like protein; flagellin domain-containing protein complement(4023845..4024648) Shewanella putrefaciens CN-32 5079847 YP_001184966.1 CDS Sputcn32_3457 NC_009438.1 4024793 4025806 R KEGG: sdn:Sden_3640 hypothetical protein; hypothetical protein complement(4024793..4025806) Shewanella putrefaciens CN-32 5079848 YP_001184967.1 CDS Sputcn32_3458 NC_009438.1 4025819 4026736 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: sdn:Sden_3641 flagellin-like protein; flagellar hook-associated protein 3 complement(4025819..4026736) Shewanella putrefaciens CN-32 5079849 YP_001184968.1 CDS Sputcn32_3459 NC_009438.1 4026748 4028121 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3642 flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(4026748..4028121) Shewanella putrefaciens CN-32 5079850 YP_001184969.1 CDS flgJ NC_009438.1 4028118 4028525 R FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase complement(4028118..4028525) Shewanella putrefaciens CN-32 5079851 YP_001184970.1 CDS flgI NC_009438.1 4028525 4029643 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(4028525..4029643) Shewanella putrefaciens CN-32 5079852 YP_001184971.1 CDS flgH NC_009438.1 4029659 4030321 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(4029659..4030321) Shewanella putrefaciens CN-32 5079853 YP_001184972.1 CDS Sputcn32_3463 NC_009438.1 4030332 4031117 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3646 flagellar basal-body rod FlgG; flagellar basal-body rod protein FlgG complement(4030332..4031117) Shewanella putrefaciens CN-32 5079854 YP_001184973.1 CDS Sputcn32_3464 NC_009438.1 4031129 4031863 R TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: sdn:Sden_3647 flagellar basal-body rod FlgF; flagellar basal-body rod protein FlgF complement(4031129..4031863) Shewanella putrefaciens CN-32 5079855 YP_001184974.1 CDS flgE NC_009438.1 4031878 4033065 R the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE complement(4031878..4033065) Shewanella putrefaciens CN-32 5080500 YP_001184975.1 CDS Sputcn32_3466 NC_009438.1 4033087 4033749 R PFAM: flagellar hook capping protein; KEGG: sdn:Sden_3649 flagellar hook capping protein; flagellar hook capping protein complement(4033087..4033749) Shewanella putrefaciens CN-32 5080501 YP_001184976.1 CDS Sputcn32_3467 NC_009438.1 4033751 4034167 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_3650 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(4033751..4034167) Shewanella putrefaciens CN-32 5080502 YP_001184977.1 CDS flgB NC_009438.1 4034176 4034526 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB complement(4034176..4034526) Shewanella putrefaciens CN-32 5080503 YP_001184978.1 CDS Sputcn32_3469 NC_009438.1 4034624 4035361 D PFAM: SAF domain; KEGG: sdn:Sden_3652 flageller protein FlgA; SAF domain-containing protein 4034624..4035361 Shewanella putrefaciens CN-32 5080504 YP_001184979.1 CDS Sputcn32_3470 NC_009438.1 4035461 4035745 D KEGG: sdn:Sden_3653 hypothetical protein; hypothetical protein 4035461..4035745 Shewanella putrefaciens CN-32 5080505 YP_001184980.1 CDS Sputcn32_3471 NC_009438.1 4035735 4036190 D KEGG: sdn:Sden_3654 hypothetical protein; hypothetical protein 4035735..4036190 Shewanella putrefaciens CN-32 5080506 YP_001184981.1 CDS Sputcn32_3472 NC_009438.1 4036267 4036689 R KEGG: sdn:Sden_3655 hypothetical protein; hypothetical protein complement(4036267..4036689) Shewanella putrefaciens CN-32 5080507 YP_001184982.1 CDS Sputcn32_3473 NC_009438.1 4036667 4038016 R KEGG: sdn:Sden_3656 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase; FliI/YscN family ATPase complement(4036667..4038016) Shewanella putrefaciens CN-32 5080508 YP_001184983.1 CDS fliH NC_009438.1 4037994 4038701 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(4037994..4038701) Shewanella putrefaciens CN-32 5080509 YP_001184984.1 CDS fliG NC_009438.1 4038701 4039687 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(4038701..4039687) Shewanella putrefaciens CN-32 5080510 YP_001184985.1 CDS fliF NC_009438.1 4039704 4041380 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein complement(4039704..4041380) Shewanella putrefaciens CN-32 5080511 YP_001184986.1 CDS Sputcn32_3477 NC_009438.1 4041393 4041731 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: sdn:Sden_3660 flagellar hook-basal body complex protein (FliE); flagellar hook-basal body complex subunit FliE complement(4041393..4041731) Shewanella putrefaciens CN-32 5080512 YP_001184987.1 CDS Sputcn32_3478 NC_009438.1 4041758 4043068 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sdn:Sden_3661 sigma-54 factor, interaction region; sigma-54 dependent trancsriptional regulator complement(4041758..4043068) Shewanella putrefaciens CN-32 5080513 YP_001184988.1 CDS Sputcn32_3479 NC_009438.1 4044144 4045025 D KEGG: sdn:Sden_3662 hypothetical protein; hypothetical protein 4044144..4045025 Shewanella putrefaciens CN-32 5080514 YP_001184989.1 CDS Sputcn32_3480 NC_009438.1 4045003 4045377 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sdn:Sden_3663 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 4045003..4045377 Shewanella putrefaciens CN-32 5080515 YP_001184990.1 CDS fliP NC_009438.1 4045374 4046108 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4045374..4046108 Shewanella putrefaciens CN-32 5080516 YP_001184991.1 CDS Sputcn32_3482 NC_009438.1 4046113 4046382 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: sdn:Sden_3665 export protein FliQ, family 3; flagellar biosynthetic protein FliQ 4046113..4046382 Shewanella putrefaciens CN-32 5080517 YP_001184992.1 CDS Sputcn32_3483 NC_009438.1 4046384 4047163 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: sdn:Sden_3666 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 4046384..4047163 Shewanella putrefaciens CN-32 5080518 YP_001184993.1 CDS Sputcn32_3484 NC_009438.1 4047160 4048290 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sdn:Sden_3667 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 4047160..4048290 Shewanella putrefaciens CN-32 5080519 YP_001184994.1 CDS Sputcn32_3485 NC_009438.1 4048306 4050387 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: sdn:Sden_3668 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 4048306..4050387 Shewanella putrefaciens CN-32 5080520 YP_001184995.1 CDS Sputcn32_3486 NC_009438.1 4050775 4051326 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: son:SO4295 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 4050775..4051326 Shewanella putrefaciens CN-32 5080521 YP_001184996.1 CDS Sputcn32_3487 NC_009438.1 4051323 4052528 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: son:SO4296 NupC family protein; Na+ dependent nucleoside transporter 4051323..4052528 Shewanella putrefaciens CN-32 5080522 YP_001184997.1 CDS Sputcn32_3488 NC_009438.1 4052599 4053324 D PFAM: purine and other phosphorylases, family 1; KEGG: son:SO4297 uridine phosphorylase, putative; purine phosphorylase family protein 1 4052599..4053324 Shewanella putrefaciens CN-32 5080523 YP_001184998.1 CDS Sputcn32_3489 NC_009438.1 4053628 4054302 D PFAM: cyclic nucleotide-binding; KEGG: son:SO4298 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein 4053628..4054302 Shewanella putrefaciens CN-32 5080524 YP_001184999.1 CDS Sputcn32_3491 NC_009438.1 4055780 4057111 D PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3815 peptidase M16 domain protein; peptidase M16 domain-containing protein 4055780..4057111 Shewanella putrefaciens CN-32 5080526 YP_001185000.1 CDS Sputcn32_3492 NC_009438.1 4057108 4058541 D PFAM: peptidase M16 domain protein; KEGG: shm:Shewmr7_3814 peptidase M16 domain protein; peptidase M16 domain-containing protein 4057108..4058541 Shewanella putrefaciens CN-32 5080527 YP_001185001.1 CDS Sputcn32_3493 NC_009438.1 4058624 4060651 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative; peptidase S9 prolyl oligopeptidase complement(4058624..4060651) Shewanella putrefaciens CN-32 5080528 YP_001185002.1 CDS Sputcn32_3494 NC_009438.1 4060982 4061533 D KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein 4060982..4061533 Shewanella putrefaciens CN-32 5080529 YP_001185003.1 CDS Sputcn32_3495 NC_009438.1 4062247 4062678 R KEGG: she:Shewmr4_0329 hypothetical protein; hypothetical protein complement(4062247..4062678) Shewanella putrefaciens CN-32 5080530 YP_001185004.1 CDS Sputcn32_3496 NC_009438.1 4062816 4063241 R KEGG: she:Shewmr4_0915 hypothetical protein; hypothetical protein complement(4062816..4063241) Shewanella putrefaciens CN-32 5080531 YP_001185005.1 CDS Sputcn32_3497 NC_009438.1 4063696 4063788 D hypothetical protein 4063696..4063788 Shewanella putrefaciens CN-32 5080532 YP_001185006.1 CDS Sputcn32_3498 NC_009438.1 4064024 4064488 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: shm:Shewmr7_3807 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase complement(4064024..4064488) Shewanella putrefaciens CN-32 5080533 YP_001185007.1 CDS Sputcn32_3499 NC_009438.1 4064683 4065540 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_3806 protein of unknown function DUF6, transmembrane; hypothetical protein 4064683..4065540 Shewanella putrefaciens CN-32 5080534 YP_001185008.1 CDS Sputcn32_3500 NC_009438.1 4065569 4066510 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_3805 transcriptional regulator, LysR family; LysR family transcriptional regulator 4065569..4066510 Shewanella putrefaciens CN-32 5080535 YP_001185009.1 CDS Sputcn32_3501 NC_009438.1 4066507 4067376 R PFAM: Patatin; KEGG: shm:Shewmr7_3804 patatin; patatin complement(4066507..4067376) Shewanella putrefaciens CN-32 5080536 YP_001185010.1 CDS Sputcn32_3502 NC_009438.1 4067508 4068536 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4524 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4067508..4068536) Shewanella putrefaciens CN-32 5080537 YP_001185011.1 CDS Sputcn32_3503 NC_009438.1 4068604 4070604 D IrgA; binds ferric enterobactin; irgA gene expression is repressed by Fur and induced by the divergently transcribed upstream gene irgB; outer membrane protein; involved in iron metabolism; enterobactin receptor protein 4068604..4070604 Shewanella putrefaciens CN-32 5080538 YP_001185012.1 CDS Sputcn32_3504 NC_009438.1 4070658 4071599 R KEGG: son:SO4522 hypothetical protein; hypothetical protein complement(4070658..4071599) Shewanella putrefaciens CN-32 5080539 YP_001185013.1 CDS Sputcn32_3505 NC_009438.1 4071646 4071879 R KEGG: she:Shewmr4_3731 hypothetical protein; hypothetical protein complement(4071646..4071879) Shewanella putrefaciens CN-32 5080540 YP_001185014.1 CDS Sputcn32_3506 NC_009438.1 4071993 4073330 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4071993..4073330) Shewanella putrefaciens CN-32 5080541 YP_001185015.1 CDS Sputcn32_3507 NC_009438.1 4073705 4074631 D PFAM: Bile acid:sodium symporter; KEGG: shm:Shewmr7_3800 bile acid:sodium symporter; bile acid:sodium symporter 4073705..4074631 Shewanella putrefaciens CN-32 5080542 YP_001185016.1 CDS Sputcn32_3508 NC_009438.1 4081070 4081531 D PFAM: RNP-1 like RNA-binding protein; KEGG: shm:Shewmr7_0175 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 4081070..4081531 Shewanella putrefaciens CN-32 5078701 YP_001185017.1 CDS Sputcn32_3509 NC_009438.1 4081553 4082359 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(4081553..4082359) Shewanella putrefaciens CN-32 5078702 YP_001185018.1 CDS Sputcn32_3510 NC_009438.1 4082595 4083695 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4082595..4083695 Shewanella putrefaciens CN-32 5078703 YP_001185019.1 CDS Sputcn32_3511 NC_009438.1 4084088 4085671 R KEGG: son:SO4497 ISSod5, transposase; transposase complement(4084088..4085671) Shewanella putrefaciens CN-32 5078704 YP_001185020.1 CDS Sputcn32_3512 NC_009438.1 4086196 4087656 D hypothetical protein 4086196..4087656 Shewanella putrefaciens CN-32 5078705 YP_001185021.1 CDS Sputcn32_3513 NC_009438.1 4087970 4088638 D KEGG: vfi:VFA0515 transposase; transposase 4087970..4088638 Shewanella putrefaciens CN-32 5078706 YP_001185022.1 CDS Sputcn32_3514 NC_009438.1 4088825 4089118 R PFAM: plasmid stabilization system; KEGG: son:SO1444 hypothetical protein; plasmid stabilization system protein complement(4088825..4089118) Shewanella putrefaciens CN-32 5078707 YP_001185023.1 CDS Sputcn32_3515 NC_009438.1 4089106 4089390 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: shm:Shewmr7_1769 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(4089106..4089390) Shewanella putrefaciens CN-32 5078708 YP_001185024.1 CDS Sputcn32_3516 NC_009438.1 4089677 4090399 R KEGG: shm:Shewmr7_1770 retinol acyltransferase domain protein; retinol acyltransferase domain-containing protein complement(4089677..4090399) Shewanella putrefaciens CN-32 5078709 YP_001185025.1 CDS Sputcn32_3517 NC_009438.1 4090545 4091111 R PFAM: phage integrase family protein; KEGG: ilo:IL0646 integrase/recombinase, XerC/XerD family; phage integrase family protein complement(4090545..4091111) Shewanella putrefaciens CN-32 5078710 YP_001185026.1 CDS Sputcn32_3518 NC_009438.1 4091228 4091641 R KEGG: shm:Shewmr7_1773 hypothetical protein; hypothetical protein complement(4091228..4091641) Shewanella putrefaciens CN-32 5078711 YP_001185027.1 CDS Sputcn32_3519 NC_009438.1 4091846 4092220 R PFAM: YagBYeeUYfjZ family protein; KEGG: son:SO1453 hypothetical protein; hypothetical protein complement(4091846..4092220) Shewanella putrefaciens CN-32 5078712 YP_001185028.1 CDS Sputcn32_3520 NC_009438.1 4092360 4092722 R KEGG: she:Shewmr4_1698 hypothetical protein; hypothetical protein complement(4092360..4092722) Shewanella putrefaciens CN-32 5078713 YP_001185029.1 CDS Sputcn32_3521 NC_009438.1 4092763 4093269 R PFAM: DNA repair protein RadC; KEGG: shm:Shewmr7_1776 DNA repair protein RadC; DNA repair protein RadC complement(4092763..4093269) Shewanella putrefaciens CN-32 5078714 YP_001185030.1 CDS Sputcn32_3522 NC_009438.1 4093402 4093599 D PFAM: Prophage CP4-57 regulatory; KEGG: shm:Shewmr7_1777 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 4093402..4093599 Shewanella putrefaciens CN-32 5078715 YP_001185031.1 CDS Sputcn32_3523 NC_009438.1 4094178 4097291 D PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: ngo:NGO0697 putative type I restriction enzyme; hypothetical protein 4094178..4097291 Shewanella putrefaciens CN-32 5078716 YP_001185032.1 CDS Sputcn32_3524 NC_009438.1 4097340 4098989 D PFAM: N-6 DNA methylase; KEGG: ngo:NGO0702 type I restriction enzyme M protein; N-6 DNA methylase 4097340..4098989 Shewanella putrefaciens CN-32 5078717 YP_001185033.1 CDS Sputcn32_3525 NC_009438.1 4098979 4100241 D PFAM: restriction modification system DNA specificity domain; KEGG: mba:Mbar_A2665 type I restriction-modification system specificity subunit; restriction modification system DNA specificity subunit 4098979..4100241 Shewanella putrefaciens CN-32 5078718 YP_001185034.1 CDS Sputcn32_3526 NC_009438.1 4100238 4100795 D KEGG: ngo:NGO0700 hypothetical protein; hypothetical protein 4100238..4100795 Shewanella putrefaciens CN-32 5078719 YP_001185035.1 CDS Sputcn32_3527 NC_009438.1 4100798 4101634 D KEGG: ngo:NGO0701 hypothetical protein; hypothetical protein 4100798..4101634 Shewanella putrefaciens CN-32 5078720 YP_001185036.1 CDS Sputcn32_3528 NC_009438.1 4101638 4102276 D KEGG: neu:NE1363 hypothetical protein; hypothetical protein 4101638..4102276 Shewanella putrefaciens CN-32 5078721 YP_001185037.1 CDS Sputcn32_3529 NC_009438.1 4102290 4103330 D PFAM: Appr-1-p processing domain protein; KEGG: neu:NE1364 Appr-1-p processing enzyme family; appr-1-p processing domain-containing protein 4102290..4103330 Shewanella putrefaciens CN-32 5078722 YP_001185038.1 CDS Sputcn32_3530 NC_009438.1 4103478 4104458 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: she:Shewmr4_2154 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(4103478..4104458) Shewanella putrefaciens CN-32 5078723 YP_001185039.1 CDS Sputcn32_3531 NC_009438.1 4104548 4105255 R KEGG: she:Shewmr4_2148 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4104548..4105255) Shewanella putrefaciens CN-32 5078724 YP_001185040.1 CDS Sputcn32_3532 NC_009438.1 4105327 4106193 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_2226 transcriptional regulator, LysR family; LysR family transcriptional regulator 4105327..4106193 Shewanella putrefaciens CN-32 5078725 YP_001185041.1 CDS Sputcn32_3533 NC_009438.1 4106474 4107601 R KEGG: shm:Shewmr7_2227 hypothetical protein; hypothetical protein complement(4106474..4107601) Shewanella putrefaciens CN-32 5078726 YP_001185042.1 CDS Sputcn32_3534 NC_009438.1 4107695 4108939 R KEGG: shm:Shewmr7_2228 hypothetical protein; hypothetical protein complement(4107695..4108939) Shewanella putrefaciens CN-32 5078727 YP_001185043.1 CDS Sputcn32_3535 NC_009438.1 4109328 4109687 R KEGG: shm:Shewmr7_2229 tetraheme cytochrome c; tetraheme cytochrome c complement(4109328..4109687) Shewanella putrefaciens CN-32 5078728 YP_001185044.1 CDS Sputcn32_3536 NC_009438.1 4109716 4111236 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shm:Shewmr7_2230 flavocytochrome c; flavocytochrome c complement(4109716..4111236) Shewanella putrefaciens CN-32 5078729 YP_001185045.1 CDS Sputcn32_3537 NC_009438.1 4111579 4111902 R KEGG: eca:ECA2856 hypothetical protein; hypothetical protein complement(4111579..4111902) Shewanella putrefaciens CN-32 5078730 YP_001185046.1 CDS Sputcn32_3538 NC_009438.1 4112422 4112742 D PFAM: helix-turn-helix domain protein; KEGG: ava:Ava_2195 transcriptional regulator, XRE family; XRE family transcriptional regulator 4112422..4112742 Shewanella putrefaciens CN-32 5078731 YP_001185047.1 CDS Sputcn32_3539 NC_009438.1 4113074 4113436 D KEGG: vvy:VV1846 hypothetical protein; hypothetical protein 4113074..4113436 Shewanella putrefaciens CN-32 5078732 YP_001185048.1 CDS Sputcn32_3540 NC_009438.1 4113779 4115041 R PFAM: phage integrase family protein; KEGG: lpn:lpg1070 integrase, phage related; phage integrase family protein complement(4113779..4115041) Shewanella putrefaciens CN-32 5078733 YP_001185049.1 CDS Sputcn32_3541 NC_009438.1 4115321 4115935 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(4115321..4115935) Shewanella putrefaciens CN-32 5078734 YP_001185050.1 CDS Sputcn32_3542 NC_009438.1 4116080 4117186 D PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; stearoyl-CoA 9-desaturase 4116080..4117186 Shewanella putrefaciens CN-32 5078735 YP_001185051.1 CDS Sputcn32_3543 NC_009438.1 4117282 4118340 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 4117282..4118340 Shewanella putrefaciens CN-32 5078736 YP_001185052.1 CDS Sputcn32_3544 NC_009438.1 4118340 4119449 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 4118340..4119449 Shewanella putrefaciens CN-32 5078737 YP_001185053.1 CDS Sputcn32_3545 NC_009438.1 4119504 4121366 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(4119504..4121366) Shewanella putrefaciens CN-32 5078738 YP_001185054.1 CDS Sputcn32_3546 NC_009438.1 4121357 4121968 R PFAM: regulatory protein, TetR; KEGG: she:Shewmr4_0172 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4121357..4121968) Shewanella putrefaciens CN-32 5078739 YP_001185055.1 CDS Sputcn32_3547 NC_009438.1 4122286 4122729 R PFAM: GCN5-related N-acetyltransferase; KEGG: shm:Shewmr7_0166 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(4122286..4122729) Shewanella putrefaciens CN-32 5078740 YP_001185056.1 CDS Sputcn32_3548 NC_009438.1 4122737 4123549 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: shm:Shewmr7_0165 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(4122737..4123549) Shewanella putrefaciens CN-32 5078741 YP_001185057.1 CDS nudE NC_009438.1 4123621 4124172 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(4123621..4124172) Shewanella putrefaciens CN-32 5078742 YP_001185058.1 CDS Sputcn32_3550 NC_009438.1 4124410 4131840 R PFAM: Fibronectin, type III domain protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: son:SO0189 fibronectin type III domain protein; fibronectin type III domain-containing protein complement(4124410..4131840) Shewanella putrefaciens CN-32 5078743 YP_001185059.1 CDS Sputcn32_3551 NC_009438.1 4131903 4132502 R PFAM: phage Tail Collar domain protein; KEGG: sdn:Sden_3729 phage tail collar; phage tail collar domain-containing protein complement(4131903..4132502) Shewanella putrefaciens CN-32 5078744 YP_001185060.1 CDS Sputcn32_3552 NC_009438.1 4132728 4133225 R PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06057 acetyltransferase; N-acetyltransferase GCN5 complement(4132728..4133225) Shewanella putrefaciens CN-32 5078745 YP_001185061.1 CDS Sputcn32_3553 NC_009438.1 4133215 4134387 R KEGG: son:SO0181 hypothetical protein; hypothetical protein complement(4133215..4134387) Shewanella putrefaciens CN-32 5078746 YP_001185062.1 CDS Sputcn32_3554 NC_009438.1 4134387 4135469 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: son:SO0180 hypothetical protein; phytanoyl-CoA dioxygenase complement(4134387..4135469) Shewanella putrefaciens CN-32 5078747 YP_001185063.1 CDS Sputcn32_3555 NC_009438.1 4135447 4136034 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: son:SO0179 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase complement(4135447..4136034) Shewanella putrefaciens CN-32 5078748 YP_001185064.1 CDS Sputcn32_3556 NC_009438.1 4136129 4136830 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0162 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 4136129..4136830 Shewanella putrefaciens CN-32 5078749 YP_001185065.1 CDS Sputcn32_3557 NC_009438.1 4136865 4137626 R PFAM: type II secretion system protein N; KEGG: shm:Shewmr7_0161 type II secretion system protein N; type II secretion system protein N complement(4136865..4137626) Shewanella putrefaciens CN-32 5078750 YP_001185066.1 CDS Sputcn32_3558 NC_009438.1 4137637 4138113 R PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein complement(4137637..4138113) Shewanella putrefaciens CN-32 5078751 YP_001185067.1 CDS Sputcn32_3559 NC_009438.1 4138115 4139302 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: she:Shewmr4_0164 general secretion pathway protein L; general secretion pathway protein L complement(4138115..4139302) Shewanella putrefaciens CN-32 5078795 YP_001185068.1 CDS Sputcn32_3560 NC_009438.1 4139353 4140357 R PFAM: General secretion pathway protein K; KEGG: she:Shewmr4_0163 general secretion pathway protein K; general secretion pathway protein K complement(4139353..4140357) Shewanella putrefaciens CN-32 5078796 YP_001185069.1 CDS Sputcn32_3561 NC_009438.1 4140354 4141112 R TIGRFAM: general secretion pathway protein J; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J complement(4140354..4141112) Shewanella putrefaciens CN-32 5078797 YP_001185070.1 CDS Sputcn32_3562 NC_009438.1 4141093 4141461 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: shm:Shewmr7_0156 general secretion pathway protein I; general secretion pathway protein I complement(4141093..4141461) Shewanella putrefaciens CN-32 5078798 YP_001185071.1 CDS Sputcn32_3563 NC_009438.1 4141448 4142020 R TIGRFAM: general secretion pathway protein H; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H complement(4141448..4142020) Shewanella putrefaciens CN-32 5078799 YP_001185072.1 CDS Sputcn32_3564 NC_009438.1 4142022 4142456 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: shm:Shewmr7_0154 general secretion pathway protein G; general secretion pathway protein G complement(4142022..4142456) Shewanella putrefaciens CN-32 5078800 YP_001185073.1 CDS Sputcn32_3565 NC_009438.1 4142520 4143743 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F complement(4142520..4143743) Shewanella putrefaciens CN-32 5078801 YP_001185074.1 CDS Sputcn32_3566 NC_009438.1 4143747 4145312 R KEGG: shm:Shewmr7_0152 general secretion pathway protein E; TIGRFAM: general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretion pathway protein E complement(4143747..4145312) Shewanella putrefaciens CN-32 5078802 YP_001185075.1 CDS Sputcn32_3567 NC_009438.1 4145305 4147416 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D; general secretion pathway protein D complement(4145305..4147416) Shewanella putrefaciens CN-32 5078803 YP_001185076.1 CDS Sputcn32_3568 NC_009438.1 4147441 4148367 R TIGRFAM: general secretion pathway protein C; KEGG: she:Shewmr4_0155 general secretion pathway protein C; general secretion pathway protein C complement(4147441..4148367) Shewanella putrefaciens CN-32 5078804 YP_001185077.1 CDS Sputcn32_3569 NC_009438.1 4148620 4149018 D PFAM: RNA-binding S4 domain protein; KEGG: shm:Shewmr7_0149 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 4148620..4149018 Shewanella putrefaciens CN-32 5078805 YP_001185078.1 CDS hslO NC_009438.1 4149034 4149894 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 4149034..4149894 Shewanella putrefaciens CN-32 5078806 YP_001185079.1 CDS Sputcn32_3571 NC_009438.1 4150097 4151638 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 4150097..4151638 Shewanella putrefaciens CN-32 5078807 YP_001185080.1 CDS Sputcn32_3572 NC_009438.1 4151839 4152390 D KEGG: tde:TDE0520 hypothetical protein; hypothetical protein 4151839..4152390 Shewanella putrefaciens CN-32 5078808 YP_001185081.1 CDS Sputcn32_3573 NC_009438.1 4152402 4152854 D hypothetical protein 4152402..4152854 Shewanella putrefaciens CN-32 5078809 YP_001185082.1 CDS Sputcn32_3574 NC_009438.1 4153019 4153906 D KEGG: son:SOA0067 hypothetical protein; hypothetical protein 4153019..4153906 Shewanella putrefaciens CN-32 5078810 YP_001185083.1 CDS Sputcn32_3576 NC_009438.1 4155235 4156014 D PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: she:Shewmr4_0398 hemerythrin HHE cation binding domain protein; hypothetical protein 4155235..4156014 Shewanella putrefaciens CN-32 5078812 YP_001185084.1 CDS Sputcn32_3577 NC_009438.1 4156136 4156639 D PFAM: AAA-4 family protein; KEGG: shm:Shewmr7_3628 putative transcriptional regulator; putative transcriptional regulator 4156136..4156639 Shewanella putrefaciens CN-32 5078813 YP_001185085.1 CDS Sputcn32_3578 NC_009438.1 4156647 4157225 R PFAM: HupE/UreJ protein; KEGG: she:Shewmr4_0396 HupE/UreJ protein; HupE/UreJ protein complement(4156647..4157225) Shewanella putrefaciens CN-32 5078814 YP_001185086.1 CDS Sputcn32_3579 NC_009438.1 4157370 4158092 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: she:Shewmr4_0395 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(4157370..4158092) Shewanella putrefaciens CN-32 5078815 YP_001185087.1 CDS Sputcn32_3580 NC_009438.1 4158092 4159000 R TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC complement(4158092..4159000) Shewanella putrefaciens CN-32 5078816 YP_001185088.1 CDS Sputcn32_3581 NC_009438.1 4159083 4159718 R PFAM: protein of unknown function DUF484; KEGG: shm:Shewmr7_3632 protein of unknown function DUF484; hypothetical protein complement(4159083..4159718) Shewanella putrefaciens CN-32 5078817 YP_001185089.1 CDS dapF NC_009438.1 4159715 4160542 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(4159715..4160542) Shewanella putrefaciens CN-32 5078818 YP_001185090.1 CDS Sputcn32_3583 NC_009438.1 4160619 4161863 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: shm:Shewmr7_3634 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(4160619..4161863) Shewanella putrefaciens CN-32 5078819 YP_001185091.1 CDS Sputcn32_3584 NC_009438.1 4161915 4162121 R KEGG: shm:Shewmr7_3635 hypothetical protein; hypothetical protein complement(4161915..4162121) Shewanella putrefaciens CN-32 5078820 YP_001185092.1 CDS Sputcn32_3585 NC_009438.1 4162189 4162518 D PFAM: Frataxin family protein; KEGG: shm:Shewmr7_3636 frataxin family protein; frataxin family protein 4162189..4162518 Shewanella putrefaciens CN-32 5078821 YP_001185093.1 CDS cyaA NC_009438.1 4162573 4164987 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(4162573..4164987) Shewanella putrefaciens CN-32 5078822 YP_001185094.1 CDS hemC NC_009438.1 4165190 4166122 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4165190..4166122 Shewanella putrefaciens CN-32 5078823 YP_001185095.1 CDS Sputcn32_3588 NC_009438.1 4166127 4166867 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 4166127..4166867 Shewanella putrefaciens CN-32 5078824 YP_001185096.1 CDS Sputcn32_3589 NC_009438.1 4166928 4168127 D PFAM: protein of unknown function DUF513, hemX; KEGG: shm:Shewmr7_3640 protein of unknown function DUF513, HemX; hypothetical protein 4166928..4168127 Shewanella putrefaciens CN-32 5078825 YP_001185097.1 CDS Sputcn32_3590 NC_009438.1 4168124 4169290 D PFAM: HemY domain protein; KEGG: she:Shewmr4_0385 HemY domain protein; HemY domain-containing protein 4168124..4169290 Shewanella putrefaciens CN-32 5078826 YP_001185098.1 CDS Sputcn32_3591 NC_009438.1 4169699 4182361 D KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein; TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; TMP repeat-containing protein; SMART: Cadherin; outer membrane adhesin like protein 4169699..4182361 Shewanella putrefaciens CN-32 5078827 YP_001185099.1 CDS Sputcn32_3592 NC_009438.1 4182451 4184628 D PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: she:Shewmr4_0383 ABC transporter related; ABC transporter-like protein 4182451..4184628 Shewanella putrefaciens CN-32 5078828 YP_001185100.1 CDS Sputcn32_3593 NC_009438.1 4184625 4186007 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: shm:Shewmr7_3644 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 4184625..4186007 Shewanella putrefaciens CN-32 5078829 YP_001185101.1 CDS Sputcn32_3594 NC_009438.1 4186034 4187449 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_3645 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 4186034..4187449 Shewanella putrefaciens CN-32 5078830 YP_001185102.1 CDS Sputcn32_3595 NC_009438.1 4187446 4188054 D PFAM: OmpA/MotB domain protein; KEGG: she:Shewmr4_0380 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4187446..4188054 Shewanella putrefaciens CN-32 5078831 YP_001185103.1 CDS Sputcn32_3596 NC_009438.1 4188070 4188780 D KEGG: shm:Shewmr7_3647 hypothetical protein; hypothetical protein 4188070..4188780 Shewanella putrefaciens CN-32 5078832 YP_001185104.1 CDS Sputcn32_3597 NC_009438.1 4188790 4190709 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_3648 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4188790..4190709 Shewanella putrefaciens CN-32 5078833 YP_001185105.1 CDS Sputcn32_3598 NC_009438.1 4191716 4194349 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: she:Shewmr4_0377 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 4191716..4194349 Shewanella putrefaciens CN-32 5078838 YP_001185106.1 CDS Sputcn32_3599 NC_009438.1 4194386 4196398 R TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: she:Shewmr4_0376 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep complement(4194386..4196398) Shewanella putrefaciens CN-32 5078839 YP_001185107.1 CDS Sputcn32_3600 NC_009438.1 4196607 4196864 D PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein 4196607..4196864 Shewanella putrefaciens CN-32 5078840 YP_001185108.1 CDS Sputcn32_3601 NC_009438.1 4196960 4197304 D KEGG: shm:Shewmr7_3652 hypothetical protein; hypothetical protein 4196960..4197304 Shewanella putrefaciens CN-32 5078841 YP_001185109.1 CDS Sputcn32_3602 NC_009438.1 4197351 4197707 D KEGG: shm:Shewmr7_3653 hypothetical protein; hypothetical protein 4197351..4197707 Shewanella putrefaciens CN-32 5078842 YP_001185110.1 CDS Sputcn32_3603 NC_009438.1 4197871 4199082 D PFAM: NnrS family protein; KEGG: sfr:Sfri_3037 NnrS family protein; NnrS family protein 4197871..4199082 Shewanella putrefaciens CN-32 5078893 YP_001185111.1 CDS Sputcn32_3604 NC_009438.1 4199066 4200475 D PFAM: cytochrome c552; KEGG: sfr:Sfri_3036 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 4199066..4200475 Shewanella putrefaciens CN-32 5078894 YP_001185112.1 CDS Sputcn32_3605 NC_009438.1 4200927 4202411 D PFAM: Inner membrane CreD family protein; KEGG: shm:Shewmr7_3656 inner membrane CreD family protein; hypothetical protein 4200927..4202411 Shewanella putrefaciens CN-32 5078895 YP_001185113.1 CDS Sputcn32_3606 NC_009438.1 4202505 4203314 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4202505..4203314 Shewanella putrefaciens CN-32 5078896 YP_001185114.1 CDS Sputcn32_3607 NC_009438.1 4203508 4204383 R PFAM: import inner membrane translocase, subunit Tim44; KEGG: son:SO4340 hypothetical protein; import inner membrane translocase subunit Tim44 complement(4203508..4204383) Shewanella putrefaciens CN-32 5078897 YP_001185115.1 CDS Sputcn32_3608 NC_009438.1 4204831 4205349 R KEGG: bur:Bcep18194_B1335 hypothetical protein; hypothetical protein complement(4204831..4205349) Shewanella putrefaciens CN-32 5078898 YP_001185116.1 CDS Sputcn32_3609 NC_009438.1 4205397 4206017 R hypothetical protein complement(4205397..4206017) Shewanella putrefaciens CN-32 5078899 YP_001185117.1 CDS Sputcn32_3610 NC_009438.1 4206204 4207337 R PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine--glyoxylate transaminase complement(4206204..4207337) Shewanella putrefaciens CN-32 5078900 YP_001185118.1 CDS Sputcn32_3611 NC_009438.1 4207585 4209195 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(4207585..4209195) Shewanella putrefaciens CN-32 5078901 YP_001185119.1 CDS Sputcn32_3612 NC_009438.1 4209198 4211057 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4209198..4211057) Shewanella putrefaciens CN-32 5078902 YP_001185120.1 CDS ilvM NC_009438.1 4211115 4211372 R PFAM: amino acid-binding ACT domain protein; KEGG: shm:Shewmr7_3663 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit complement(4211115..4211372) Shewanella putrefaciens CN-32 5078903 YP_001185121.1 CDS Sputcn32_3614 NC_009438.1 4211369 4213042 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(4211369..4213042) Shewanella putrefaciens CN-32 5078904 YP_001185122.1 CDS Sputcn32_3615 NC_009438.1 4213654 4215132 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4213654..4215132) Shewanella putrefaciens CN-32 5078905 YP_001185123.1 CDS Sputcn32_3616 NC_009438.1 4215366 4216238 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4215366..4216238 Shewanella putrefaciens CN-32 5078906 YP_001185124.1 CDS Sputcn32_3617 NC_009438.1 4216235 4217551 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: shm:Shewmr7_3667 protein of unknown function DUF21; hypothetical protein complement(4216235..4217551) Shewanella putrefaciens CN-32 5078907 YP_001185125.1 CDS Sputcn32_3618 NC_009438.1 4218089 4218556 R PFAM: protein of unknown function UPF0153; KEGG: she:Shewmr4_0357 protein of unknown function UPF0153; hypothetical protein complement(4218089..4218556) Shewanella putrefaciens CN-32 5078908 YP_001185126.1 CDS Sputcn32_3619 NC_009438.1 4218680 4219318 D PFAM: ERCC4 domain protein; KEGG: sdn:Sden_0291 ERCC4; ERCC4 domain-containing protein 4218680..4219318 Shewanella putrefaciens CN-32 5078909 YP_001185127.1 CDS Sputcn32_3620 NC_009438.1 4219347 4220030 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(4219347..4220030) Shewanella putrefaciens CN-32 5078910 YP_001185128.1 CDS Sputcn32_3621 NC_009438.1 4220333 4221229 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0340 transcriptional regulator, LysR family; LysR family transcriptional regulator 4220333..4221229 Shewanella putrefaciens CN-32 5078911 YP_001185129.1 CDS Sputcn32_3622 NC_009438.1 4221333 4221809 D KEGG: shm:Shewmr7_0339 hypothetical protein; hypothetical protein 4221333..4221809 Shewanella putrefaciens CN-32 5078912 YP_001185130.1 CDS Sputcn32_3623 NC_009438.1 4221845 4223800 R KEGG: shm:Shewmr7_0338 hypothetical protein; hypothetical protein complement(4221845..4223800) Shewanella putrefaciens CN-32 5078913 YP_001185131.1 CDS Sputcn32_3624 NC_009438.1 4223800 4224027 R PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_0337 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4223800..4224027) Shewanella putrefaciens CN-32 5078914 YP_001185132.1 CDS Sputcn32_3625 NC_009438.1 4224187 4225302 R PFAM: filamentation induced by cAMP protein Fic; KEGG: shm:Shewmr7_0336 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(4224187..4225302) Shewanella putrefaciens CN-32 5078915 YP_001185133.1 CDS Sputcn32_3626 NC_009438.1 4225615 4226448 D KEGG: son:SO0366 hypothetical protein; hypothetical protein 4225615..4226448 Shewanella putrefaciens CN-32 5078916 YP_001185134.1 CDS Sputcn32_3627 NC_009438.1 4226466 4227563 R PFAM: aminoglycoside phosphotransferase; KEGG: shm:Shewmr7_0333 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(4226466..4227563) Shewanella putrefaciens CN-32 5078917 YP_001185135.1 CDS Sputcn32_3628 NC_009438.1 4227556 4228428 R KEGG: she:Shewmr4_3611 hypothetical protein; hypothetical protein complement(4227556..4228428) Shewanella putrefaciens CN-32 5078918 YP_001185136.1 CDS Sputcn32_3629 NC_009438.1 4228630 4230159 R KEGG: shm:Shewmr7_0331 hypothetical protein; hypothetical protein complement(4228630..4230159) Shewanella putrefaciens CN-32 5078919 YP_001185137.1 CDS gmk NC_009438.1 4230362 4231036 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4230362..4231036 Shewanella putrefaciens CN-32 5078920 YP_001185138.1 CDS rpoZ NC_009438.1 4231095 4231373 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4231095..4231373 Shewanella putrefaciens CN-32 5078921 YP_001185139.1 CDS Sputcn32_3632 NC_009438.1 4231419 4233524 D KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4231419..4233524 Shewanella putrefaciens CN-32 5078922 YP_001185140.1 CDS Sputcn32_3633 NC_009438.1 4233550 4233933 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 4233550..4233933 Shewanella putrefaciens CN-32 5078923 YP_001185141.1 CDS Sputcn32_3634 NC_009438.1 4234173 4235837 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 4234173..4235837 Shewanella putrefaciens CN-32 5078924 YP_001185142.1 CDS Sputcn32_3635 NC_009438.1 4236017 4236967 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: shm:Shewmr7_0325 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter 4236017..4236967 Shewanella putrefaciens CN-32 5078925 YP_001185143.1 CDS Sputcn32_3636 NC_009438.1 4237309 4239723 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: hne:HNE_1653 TonB-dependent receptor; TonB-dependent receptor 4237309..4239723 Shewanella putrefaciens CN-32 5078926 YP_001185144.1 CDS Sputcn32_3637 NC_009438.1 4240084 4241208 R KEGG: shm:Shewmr7_0321 hypothetical protein; hypothetical protein complement(4240084..4241208) Shewanella putrefaciens CN-32 5078927 YP_001185145.1 CDS Sputcn32_3638 NC_009438.1 4241472 4241993 D PFAM: superoxide dismutase, copper/zinc binding; KEGG: vch:VC1583 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding 4241472..4241993 Shewanella putrefaciens CN-32 5078928 YP_001185146.1 CDS Sputcn32_3639 NC_009438.1 4242153 4243682 D KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4242153..4243682 Shewanella putrefaciens CN-32 5078929 YP_001185147.1 CDS Sputcn32_3640 NC_009438.1 4243784 4244680 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4243784..4244680 Shewanella putrefaciens CN-32 5078930 YP_001185148.1 CDS Sputcn32_3641 NC_009438.1 4244694 4245638 D PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; putative acyltransferase 4244694..4245638 Shewanella putrefaciens CN-32 5078931 YP_001185149.1 CDS Sputcn32_3642 NC_009438.1 4245635 4246141 R PFAM: protein of unknown function DUF523; KEGG: she:Shewmr4_3627 protein of unknown function DUF523; hypothetical protein complement(4245635..4246141) Shewanella putrefaciens CN-32 5078932 YP_001185150.1 CDS Sputcn32_3643 NC_009438.1 4246442 4247209 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family; GntR family transcriptional regulator 4246442..4247209 Shewanella putrefaciens CN-32 5078933 YP_001185151.1 CDS prpB NC_009438.1 4247262 4248140 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 4247262..4248140 Shewanella putrefaciens CN-32 5078934 YP_001185152.1 CDS Sputcn32_3645 NC_009438.1 4248305 4249432 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 4248305..4249432 Shewanella putrefaciens CN-32 5078935 YP_001185153.1 CDS Sputcn32_3646 NC_009438.1 4249501 4252116 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4249501..4252116 Shewanella putrefaciens CN-32 5078936 YP_001185154.1 CDS Sputcn32_3647 NC_009438.1 4252210 4253403 D TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: shm:Shewmr7_0312 putative AcnD-accessory protein PrpF; putative AcnD-accessory protein PrpF 4252210..4253403 Shewanella putrefaciens CN-32 5078937 YP_001185155.1 CDS Sputcn32_3648 NC_009438.1 4253654 4258189 D KEGG: shm:Shewmr7_0311 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4253654..4258189 Shewanella putrefaciens CN-32 5078938 YP_001185156.1 CDS Sputcn32_3649 NC_009438.1 4258248 4259339 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4258248..4259339) Shewanella putrefaciens CN-32 5078939 YP_001185157.1 CDS Sputcn32_3650 NC_009438.1 4259466 4259738 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: shm:Shewmr7_0308 transcriptional antiterminator, Rof; transcriptional antiterminator Rof 4259466..4259738 Shewanella putrefaciens CN-32 5078940 YP_001185158.1 CDS Sputcn32_3651 NC_009438.1 4259752 4260093 D KEGG: son:SO0338 hypothetical protein; hypothetical protein 4259752..4260093 Shewanella putrefaciens CN-32 5078941 YP_001185159.1 CDS Sputcn32_3652 NC_009438.1 4260219 4260572 R PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP complement(4260219..4260572) Shewanella putrefaciens CN-32 5078942 YP_001185160.1 CDS Sputcn32_3653 NC_009438.1 4260637 4262166 R PFAM: Na+/H+ antiporter NhaC; KEGG: she:Shewmr4_3639 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(4260637..4262166) Shewanella putrefaciens CN-32 5078943 YP_001185161.1 CDS Sputcn32_3654 NC_009438.1 4262346 4262567 D PFAM: protein of unknown function DUF904; KEGG: shm:Shewmr7_0304 protein of unknown function DUF904; hypothetical protein 4262346..4262567 Shewanella putrefaciens CN-32 5078987 YP_001185162.1 CDS Sputcn32_3655 NC_009438.1 4262564 4262776 R PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein complement(4262564..4262776) Shewanella putrefaciens CN-32 5078988 YP_001185163.1 CDS Sputcn32_3656 NC_009438.1 4263245 4263853 R PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase complement(4263245..4263853) Shewanella putrefaciens CN-32 5078989 YP_001185164.1 CDS Sputcn32_3657 NC_009438.1 4263978 4265015 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(4263978..4265015) Shewanella putrefaciens CN-32 5078990 YP_001185165.1 CDS Sputcn32_3658 NC_009438.1 4265026 4265349 R KEGG: she:Shewmr4_3644 hypothetical protein; hypothetical protein complement(4265026..4265349) Shewanella putrefaciens CN-32 5078991 YP_001185166.1 CDS Sputcn32_3659 NC_009438.1 4265363 4266817 R PFAM: protein of unknown function UPF0061; KEGG: she:Shewmr4_3645 protein of unknown function UPF0061; hypothetical protein complement(4265363..4266817) Shewanella putrefaciens CN-32 5078992 YP_001185167.1 CDS Sputcn32_3660 NC_009438.1 4266828 4267121 R KEGG: shm:Shewmr7_0298 hypothetical protein; hypothetical protein complement(4266828..4267121) Shewanella putrefaciens CN-32 5078993 YP_001185168.1 CDS Sputcn32_3661 NC_009438.1 4267248 4268129 R KEGG: shm:Shewmr7_0297 hypothetical protein; hypothetical protein complement(4267248..4268129) Shewanella putrefaciens CN-32 5078994 YP_001185169.1 CDS Sputcn32_3662 NC_009438.1 4268401 4268760 D PFAM: DsrE family protein; KEGG: shm:Shewmr7_0296 DsrE family protein; DsrE family protein 4268401..4268760 Shewanella putrefaciens CN-32 5078995 YP_001185170.1 CDS Sputcn32_3663 NC_009438.1 4268899 4269300 D KEGG: shm:Shewmr7_0295 hypothetical protein; hypothetical protein 4268899..4269300 Shewanella putrefaciens CN-32 5078996 YP_001185171.1 CDS Sputcn32_3664 NC_009438.1 4269355 4270284 D KEGG: she:Shewmr4_3650 hypothetical protein; hypothetical protein 4269355..4270284 Shewanella putrefaciens CN-32 5078997 YP_001185172.1 CDS Sputcn32_3665 NC_009438.1 4270435 4271019 D KEGG: shm:Shewmr7_0293 hypothetical protein; hypothetical protein 4270435..4271019 Shewanella putrefaciens CN-32 5078998 YP_001185173.1 CDS Sputcn32_3666 NC_009438.1 4271126 4272127 R PFAM: periplasmic binding protein; KEGG: ppu:PP_2591 ferric siderophore ABC transporter, periplasmic siderophore-binding protein; periplasmic binding protein complement(4271126..4272127) Shewanella putrefaciens CN-32 5078999 YP_001185174.1 CDS Sputcn32_3667 NC_009438.1 4272124 4272906 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2494 ferric siderophore ABC transporter, ATP-binding protein BauE; ABC transporter-like protein complement(4272124..4272906) Shewanella putrefaciens CN-32 5079000 YP_001185175.1 CDS Sputcn32_3668 NC_009438.1 4272903 4273808 R PFAM: transport system permease protein; KEGG: pen:PSEEN2495 ferric siderophore ABC transporter, permease protein BauC; transport system permease complement(4272903..4273808) Shewanella putrefaciens CN-32 5079001 YP_001185176.1 CDS Sputcn32_3669 NC_009438.1 4273850 4274791 R PFAM: transport system permease protein; ABC-3 protein; KEGG: ppu:PP_2594 ferric siderophore ABC transporter, permease protein; transport system permease complement(4273850..4274791) Shewanella putrefaciens CN-32 5079002 YP_001185177.1 CDS Sputcn32_3670 NC_009438.1 4274864 4275574 R KEGG: rha:RHA1_ro03859 probable tetracycline repressor; hypothetical protein complement(4274864..4275574) Shewanella putrefaciens CN-32 5079003 YP_001185178.1 CDS Sputcn32_3671 NC_009438.1 4275667 4277784 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rru:Rru_A2312 TonB-dependent receptor; TonB-dependent receptor complement(4275667..4277784) Shewanella putrefaciens CN-32 5079004 YP_001185179.1 CDS Sputcn32_3672 NC_009438.1 4278104 4279705 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_B0675 ABC efflux pump, fused inner membrane and ATPase subunits; ABC transporter-like protein 4278104..4279705 Shewanella putrefaciens CN-32 5079005 YP_001185180.1 CDS Sputcn32_3673 NC_009438.1 4279702 4281261 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa28020 putative ABC transporter; ABC transporter-like protein 4279702..4281261 Shewanella putrefaciens CN-32 5079006 YP_001185181.1 CDS Sputcn32_3674 NC_009438.1 4281427 4282017 R KEGG: shm:Shewmr7_0292 hypothetical protein; hypothetical protein complement(4281427..4282017) Shewanella putrefaciens CN-32 5079007 YP_001185182.1 CDS Sputcn32_3675 NC_009438.1 4282100 4283137 R PFAM: acyltransferase 3; KEGG: she:Shewmr4_3653 acyltransferase 3; acyltransferase 3 complement(4282100..4283137) Shewanella putrefaciens CN-32 5079008 YP_001185183.1 CDS Sputcn32_3676 NC_009438.1 4283140 4284555 R KEGG: she:Shewmr4_3654 hypothetical protein; hypothetical protein complement(4283140..4284555) Shewanella putrefaciens CN-32 5079009 YP_001185184.1 CDS Sputcn32_3677 NC_009438.1 4284726 4285076 R PFAM: protein of unknown function DUF1232; KEGG: she:Shewmr4_3655 protein of unknown function DUF1232; hypothetical protein complement(4284726..4285076) Shewanella putrefaciens CN-32 5079010 YP_001185185.1 CDS Sputcn32_3678 NC_009438.1 4285679 4285783 D KEGG: shm:Shewmr7_0279 hypothetical protein; hypothetical protein 4285679..4285783 Shewanella putrefaciens CN-32 5079011 YP_001185186.1 CDS Sputcn32_3679 NC_009438.1 4286108 4288270 D PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: she:Shewmr4_3667 ornithine decarboxylase; ornithine decarboxylase 4286108..4288270 Shewanella putrefaciens CN-32 5079012 YP_001185187.1 CDS potE NC_009438.1 4288355 4289674 D catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 4288355..4289674 Shewanella putrefaciens CN-32 5079013 YP_001185188.1 CDS Sputcn32_3681 NC_009438.1 4289799 4290953 D PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_3669 porin, gram-negative type; porin 4289799..4290953 Shewanella putrefaciens CN-32 5079014 YP_001185189.1 CDS Sputcn32_3682 NC_009438.1 4291198 4293570 R PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein complement(4291198..4293570) Shewanella putrefaciens CN-32 5079015 YP_001185190.1 CDS Sputcn32_3683 NC_009438.1 4293772 4294182 R KEGG: shm:Shewmr7_0274 hypothetical protein; hypothetical protein complement(4293772..4294182) Shewanella putrefaciens CN-32 5079016 YP_001185191.1 CDS Sputcn32_3684 NC_009438.1 4294341 4295561 D PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 4294341..4295561 Shewanella putrefaciens CN-32 5079017 YP_001185192.1 CDS Sputcn32_3685 NC_009438.1 4295739 4297388 D KEGG: she:Shewmr4_3673 hypothetical protein; hypothetical protein 4295739..4297388 Shewanella putrefaciens CN-32 5079018 YP_001185193.1 CDS Sputcn32_3686 NC_009438.1 4297420 4298139 R PFAM: ThiJ/PfpI domain protein; KEGG: lbl:LBL_2610 transcriptional regulator, ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein complement(4297420..4298139) Shewanella putrefaciens CN-32 5079019 YP_001185194.1 CDS Sputcn32_3687 NC_009438.1 4298383 4298994 D PFAM: regulatory protein, TetR; KEGG: btk:BT9727_2867 transcriptional regulator, TetR family; TetR family transcriptional regulator 4298383..4298994 Shewanella putrefaciens CN-32 5079020 YP_001185195.1 CDS Sputcn32_3688 NC_009438.1 4299033 4299287 R KEGG: sdn:Sden_0547 hypothetical protein; hypothetical protein complement(4299033..4299287) Shewanella putrefaciens CN-32 5079021 YP_001185196.1 CDS Sputcn32_3689 NC_009438.1 4299299 4299802 R KEGG: sdn:Sden_0546 putative orphan protein; hypothetical protein complement(4299299..4299802) Shewanella putrefaciens CN-32 5079022 YP_001185197.1 CDS Sputcn32_3690 NC_009438.1 4299812 4300135 R KEGG: sdn:Sden_0545 hypothetical protein; hypothetical protein complement(4299812..4300135) Shewanella putrefaciens CN-32 5079023 YP_001185198.1 CDS Sputcn32_3691 NC_009438.1 4300925 4301767 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: she:Shewmr4_3683 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4300925..4301767) Shewanella putrefaciens CN-32 5079025 YP_001185199.1 CDS Sputcn32_3692 NC_009438.1 4301856 4303706 D PFAM: LppC family lipoprotein; KEGG: she:Shewmr4_3684 LppC family lipoprotein; LppC family lipoprotein 4301856..4303706 Shewanella putrefaciens CN-32 5079026 YP_001185200.1 CDS Sputcn32_3693 NC_009438.1 4303703 4304029 D PFAM: protein of unknown function UPF0102; KEGG: shm:Shewmr7_0260 protein of unknown function UPF0102; hypothetical protein 4303703..4304029 Shewanella putrefaciens CN-32 5079027 YP_001185201.1 CDS Sputcn32_3694 NC_009438.1 4304122 4304715 D TIGRFAM: phosphoheptose isomerase; KEGG: shm:Shewmr7_0259 phosphoheptose isomerase; phosphoheptose isomerase 4304122..4304715 Shewanella putrefaciens CN-32 5079028 YP_001185202.1 CDS Sputcn32_3695 NC_009438.1 4304712 4305278 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: shm:Shewmr7_0258 transport-associated; transport-associated 4304712..4305278 Shewanella putrefaciens CN-32 5079029 YP_001185203.1 CDS Sputcn32_3696 NC_009438.1 4305299 4306222 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: shm:Shewmr7_0257 protein of unknown function DUF6, transmembrane; hypothetical protein complement(4305299..4306222) Shewanella putrefaciens CN-32 5079030 YP_001185204.1 CDS Sputcn32_3697 NC_009438.1 4306342 4307214 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: shm:Shewmr7_0256 transcriptional regulator, LysR family; LysR family transcriptional regulator 4306342..4307214 Shewanella putrefaciens CN-32 5079031 YP_001185205.1 CDS Sputcn32_3698 NC_009438.1 4307284 4308282 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4307284..4308282) Shewanella putrefaciens CN-32 5079032 YP_001185206.1 CDS Sputcn32_3699 NC_009438.1 4308327 4309007 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: shm:Shewmr7_0254 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(4308327..4309007) Shewanella putrefaciens CN-32 5079033 YP_001185207.1 CDS Sputcn32_3700 NC_009438.1 4309012 4309722 R PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: shm:Shewmr7_0253 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(4309012..4309722) Shewanella putrefaciens CN-32 5079034 YP_001185208.1 CDS Sputcn32_3701 NC_009438.1 4309952 4310317 D KEGG: shm:Shewmr7_0252 hypothetical protein; hypothetical protein 4309952..4310317 Shewanella putrefaciens CN-32 5079035 YP_001185209.1 CDS Sputcn32_3702 NC_009438.1 4310317 4310502 D KEGG: son:SO0290 hypothetical protein; hypothetical protein 4310317..4310502 Shewanella putrefaciens CN-32 5079036 YP_001185210.1 CDS Sputcn32_3703 NC_009438.1 4310520 4311359 R KEGG: she:Shewmr4_3695 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase complement(4310520..4311359) Shewanella putrefaciens CN-32 5079037 YP_001185211.1 CDS Sputcn32_3704 NC_009438.1 4311408 4312799 R PFAM: Sporulation domain protein; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein complement(4311408..4312799) Shewanella putrefaciens CN-32 5079088 YP_001185212.1 CDS aroB NC_009438.1 4312818 4313897 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(4312818..4313897) Shewanella putrefaciens CN-32 5079089 YP_001185213.1 CDS aroK NC_009438.1 4313903 4314418 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(4313903..4314418) Shewanella putrefaciens CN-32 5079090 YP_001185214.1 CDS Sputcn32_3707 NC_009438.1 4314635 4316686 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: she:Shewmr4_3699 type IV pilus secretin PilQ; type IV pilus secretin PilQ complement(4314635..4316686) Shewanella putrefaciens CN-32 5079091 YP_001185215.1 CDS Sputcn32_3708 NC_009438.1 4316708 4317226 R PFAM: Pilus assembly protein, PilQ; KEGG: shm:Shewmr7_0245 pilus assembly protein, PilQ; pilus assembly protein, PilQ complement(4316708..4317226) Shewanella putrefaciens CN-32 5079092 YP_001185216.1 CDS Sputcn32_3709 NC_009438.1 4317223 4317849 R PFAM: Pilus assembly protein, PilO; KEGG: shm:Shewmr7_0244 pilus assembly protein, PilO; pilus assembly protein, PilO complement(4317223..4317849) Shewanella putrefaciens CN-32 5079093 YP_001185217.1 CDS Sputcn32_3710 NC_009438.1 4317846 4318430 R PFAM: Fimbrial assembly family protein; KEGG: shm:Shewmr7_0243 fimbrial assembly family protein; fimbrial assembly family protein complement(4317846..4318430) Shewanella putrefaciens CN-32 5079094 YP_001185218.1 CDS Sputcn32_3711 NC_009438.1 4318418 4319497 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM complement(4318418..4319497) Shewanella putrefaciens CN-32 5079095 YP_001185219.1 CDS Sputcn32_3712 NC_009438.1 4319686 4322205 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: shm:Shewmr7_0241 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 4319686..4322205 Shewanella putrefaciens CN-32 5079096 YP_001185220.1 CDS Sputcn32_3713 NC_009438.1 4322287 4323654 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(4322287..4323654) Shewanella putrefaciens CN-32 5079097 YP_001185221.1 CDS Sputcn32_3714 NC_009438.1 4323747 4324970 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(4323747..4324970) Shewanella putrefaciens CN-32 5079098 YP_001185222.1 CDS Sputcn32_3715 NC_009438.1 4325030 4325935 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(4325030..4325935) Shewanella putrefaciens CN-32 5079099 YP_001185223.1 CDS Sputcn32_3716 NC_009438.1 4325948 4326730 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(4325948..4326730) Shewanella putrefaciens CN-32 5079100 YP_001185224.1 CDS argC NC_009438.1 4326762 4327814 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4326762..4327814) Shewanella putrefaciens CN-32 5079101 YP_001185225.1 CDS Sputcn32_3718 NC_009438.1 4328365 4331034 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4328365..4331034 Shewanella putrefaciens CN-32 5079102 YP_001185226.1 CDS Sputcn32_3719 NC_009438.1 4331034 4331579 D PFAM: protein of unknown function DUF1439; KEGG: shm:Shewmr7_0234 protein of unknown function DUF1439; hypothetical protein 4331034..4331579 Shewanella putrefaciens CN-32 5079103 YP_001185227.1 CDS Sputcn32_3720 NC_009438.1 4331670 4332944 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(4331670..4332944) Shewanella putrefaciens CN-32 5079104 YP_001185228.1 CDS Sputcn32_3721 NC_009438.1 4338895 4339482 R PFAM: Redoxin domain protein; KEGG: shm:Shewmr7_0232 redoxin domain protein; redoxin domain-containing protein complement(4338895..4339482) Shewanella putrefaciens CN-32 5079108 YP_001185229.1 CDS Sputcn32_3722 NC_009438.1 4339479 4339958 R PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein complement(4339479..4339958) Shewanella putrefaciens CN-32 5079109 YP_001185230.1 CDS Sputcn32_3723 NC_009438.1 4339955 4340509 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(4339955..4340509) Shewanella putrefaciens CN-32 5079110 YP_001185231.1 CDS Sputcn32_3724 NC_009438.1 4340521 4342500 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: shm:Shewmr7_0229 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(4340521..4342500) Shewanella putrefaciens CN-32 5079111 YP_001185232.1 CDS Sputcn32_3725 NC_009438.1 4342897 4344144 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; hypothetical protein 4342897..4344144 Shewanella putrefaciens CN-32 5079112 YP_001185233.1 CDS Sputcn32_3726 NC_009438.1 4344206 4344505 R PFAM: cytochrome c, class I; KEGG: shm:Shewmr7_0227 cytochrome c, class I; cytochrome c, class I complement(4344206..4344505) Shewanella putrefaciens CN-32 5079113 YP_001185234.1 CDS Sputcn32_3727 NC_009438.1 4344826 4345476 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4344826..4345476 Shewanella putrefaciens CN-32 5079114 YP_001185235.1 CDS Sputcn32_3728 NC_009438.1 4345488 4346174 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB 4345488..4346174 Shewanella putrefaciens CN-32 5079115 YP_001185236.1 CDS Sputcn32_3729 NC_009438.1 4346176 4346922 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC 4346176..4346922 Shewanella putrefaciens CN-32 5079116 YP_001185237.1 CDS Sputcn32_3730 NC_009438.1 4346922 4347122 D PFAM: Heme exporter protein D (CcmD); KEGG: shm:Shewmr7_0223 heme exporter protein D (CcmD); Heme exporter protein CcmD 4346922..4347122 Shewanella putrefaciens CN-32 5079117 YP_001185238.1 CDS Sputcn32_3731 NC_009438.1 4347119 4347607 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4347119..4347607 Shewanella putrefaciens CN-32 5079118 YP_001185239.1 CDS rplQ NC_009438.1 4348277 4348672 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(4348277..4348672) Shewanella putrefaciens CN-32 5079120 YP_001185240.1 CDS Sputcn32_3734 NC_009438.1 4348713 4349702 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(4348713..4349702) Shewanella putrefaciens CN-32 5079121 YP_001185241.1 CDS rpsD NC_009438.1 4349727 4350347 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(4349727..4350347) Shewanella putrefaciens CN-32 5079122 YP_001185242.1 CDS Sputcn32_3736 NC_009438.1 4350380 4350772 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(4350380..4350772) Shewanella putrefaciens CN-32 5079123 YP_001185243.1 CDS rpsM NC_009438.1 4350788 4351144 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(4350788..4351144) Shewanella putrefaciens CN-32 5079124 YP_001185244.1 CDS rpmJ NC_009438.1 4351261 4351374 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(4351261..4351374) Shewanella putrefaciens CN-32 5079125 YP_001185245.1 CDS secY NC_009438.1 4351396 4352736 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(4351396..4352736) Shewanella putrefaciens CN-32 5079126 YP_001185246.1 CDS rplO NC_009438.1 4352744 4353178 R late assembly protein; 50S ribosomal protein L15 complement(4352744..4353178) Shewanella putrefaciens CN-32 5079127 YP_001185247.1 CDS rpmD NC_009438.1 4353182 4353364 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(4353182..4353364) Shewanella putrefaciens CN-32 5079128 YP_001185248.1 CDS rpsE NC_009438.1 4353371 4353874 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(4353371..4353874) Shewanella putrefaciens CN-32 5079129 YP_001185249.1 CDS rplR NC_009438.1 4353887 4354237 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(4353887..4354237) Shewanella putrefaciens CN-32 5079130 YP_001185250.1 CDS rplF NC_009438.1 4354248 4354781 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(4354248..4354781) Shewanella putrefaciens CN-32 5079131 YP_001185251.1 CDS rpsH NC_009438.1 4354792 4355184 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(4354792..4355184) Shewanella putrefaciens CN-32 5079132 YP_001185252.1 CDS rpsN NC_009438.1 4355209 4355514 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(4355209..4355514) Shewanella putrefaciens CN-32 5079133 YP_001185253.1 CDS rplE NC_009438.1 4355525 4356064 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(4355525..4356064) Shewanella putrefaciens CN-32 5079134 YP_001185254.1 CDS rplX NC_009438.1 4356077 4356391 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(4356077..4356391) Shewanella putrefaciens CN-32 5079135 YP_001185255.1 CDS rplN NC_009438.1 4356403 4356771 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(4356403..4356771) Shewanella putrefaciens CN-32 5079136 YP_001185256.1 CDS rpsQ NC_009438.1 4356950 4357198 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(4356950..4357198) Shewanella putrefaciens CN-32 5081030 YP_001185257.1 CDS Sputcn32_3751 NC_009438.1 4357198 4357389 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(4357198..4357389) Shewanella putrefaciens CN-32 5081031 YP_001185258.1 CDS rplP NC_009438.1 4357389 4357799 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(4357389..4357799) Shewanella putrefaciens CN-32 5081032 YP_001185259.1 CDS rpsC NC_009438.1 4357811 4358503 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(4357811..4358503) Shewanella putrefaciens CN-32 5081033 YP_001185260.1 CDS rplV NC_009438.1 4358513 4358845 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(4358513..4358845) Shewanella putrefaciens CN-32 5081034 YP_001185261.1 CDS rpsS NC_009438.1 4358861 4359139 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(4358861..4359139) Shewanella putrefaciens CN-32 5081035 YP_001185262.1 CDS rplB NC_009438.1 4359154 4359978 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(4359154..4359978) Shewanella putrefaciens CN-32 5081036 YP_001185263.1 CDS rplW NC_009438.1 4359995 4360300 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(4359995..4360300) Shewanella putrefaciens CN-32 5081037 YP_001185264.1 CDS rplD NC_009438.1 4360297 4360902 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(4360297..4360902) Shewanella putrefaciens CN-32 5081038 YP_001185265.1 CDS rplC NC_009438.1 4360920 4361558 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(4360920..4361558) Shewanella putrefaciens CN-32 5081039 YP_001185266.1 CDS rpsJ NC_009438.1 4361586 4361897 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(4361586..4361897) Shewanella putrefaciens CN-32 5081040 YP_001185267.1 CDS Sputcn32_3761 NC_009438.1 4362232 4363416 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4362232..4363416) Shewanella putrefaciens CN-32 5081041 YP_001185268.1 CDS Sputcn32_3762 NC_009438.1 4363489 4365585 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4363489..4365585) Shewanella putrefaciens CN-32 5081042 YP_001185269.1 CDS Sputcn32_3763 NC_009438.1 4365664 4366134 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(4365664..4366134) Shewanella putrefaciens CN-32 5081043 YP_001185270.1 CDS rpsL NC_009438.1 4366215 4366589 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(4366215..4366589) Shewanella putrefaciens CN-32 5081044 YP_001185271.1 CDS Sputcn32_3765 NC_009438.1 4366769 4370986 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4366769..4370986) Shewanella putrefaciens CN-32 5081045 YP_001185272.1 CDS rpoB NC_009438.1 4371070 4375101 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(4371070..4375101) Shewanella putrefaciens CN-32 5081046 YP_001185273.1 CDS rplL NC_009438.1 4375342 4375710 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(4375342..4375710) Shewanella putrefaciens CN-32 5081047 YP_001185274.1 CDS rplJ NC_009438.1 4375765 4376265 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(4375765..4376265) Shewanella putrefaciens CN-32 5081048 YP_001185275.1 CDS rplA NC_009438.1 4376532 4377233 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(4376532..4377233) Shewanella putrefaciens CN-32 5081049 YP_001185276.1 CDS rplK NC_009438.1 4377238 4377666 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(4377238..4377666) Shewanella putrefaciens CN-32 5081050 YP_001185277.1 CDS Sputcn32_3771 NC_009438.1 4377794 4378345 R KEGG: shm:Shewmr7_0182 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; NusG antitermination factor complement(4377794..4378345) Shewanella putrefaciens CN-32 5081051 YP_001185278.1 CDS secE NC_009438.1 4378355 4378726 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(4378355..4378726) Shewanella putrefaciens CN-32 5081052 YP_001185279.1 CDS Sputcn32_3773 NC_009438.1 4379002 4380186 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4379002..4380186) Shewanella putrefaciens CN-32 5081053 YP_001185280.1 CDS Sputcn32_3774 NC_009438.1 4380899 4381849 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4380899..4381849 Shewanella putrefaciens CN-32 5081058 YP_001185281.1 CDS Sputcn32_3775 NC_009438.1 4381860 4382819 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(4381860..4382819) Shewanella putrefaciens CN-32 5081059 YP_001185282.1 CDS murB NC_009438.1 4382812 4383837 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4382812..4383837) Shewanella putrefaciens CN-32 5081060 YP_001185283.1 CDS Sputcn32_3777 NC_009438.1 4384096 4385262 D PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 4384096..4385262 Shewanella putrefaciens CN-32 5081061 YP_001185284.1 CDS Sputcn32_3778 NC_009438.1 4385353 4386609 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter complement(4385353..4386609) Shewanella putrefaciens CN-32 5081062 YP_001185285.1 CDS Sputcn32_3779 NC_009438.1 4386609 4389032 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4386609..4389032) Shewanella putrefaciens CN-32 5081063 YP_001185286.1 CDS Sputcn32_3780 NC_009438.1 4389382 4390002 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4389382..4390002 Shewanella putrefaciens CN-32 5081064 YP_001185287.1 CDS Sputcn32_3781 NC_009438.1 4389999 4390511 D KEGG: she:Shewmr4_3790 hypothetical protein; hypothetical protein 4389999..4390511 Shewanella putrefaciens CN-32 5081065 YP_001185288.1 CDS Sputcn32_3782 NC_009438.1 4390907 4392445 D PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: she:Shewmr4_3791 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 4390907..4392445 Shewanella putrefaciens CN-32 5081066 YP_001185289.1 CDS Sputcn32_3783 NC_009438.1 4392455 4394047 D PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3865 cytochrome-c oxidase; cytochrome-c oxidase 4392455..4394047 Shewanella putrefaciens CN-32 5081067 YP_001185290.1 CDS Sputcn32_3784 NC_009438.1 4394049 4394615 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4394049..4394615 Shewanella putrefaciens CN-32 5081068 YP_001185291.1 CDS Sputcn32_3785 NC_009438.1 4394612 4395487 D PFAM: cytochrome c oxidase, subunit III; KEGG: shm:Shewmr7_3867 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 4394612..4395487 Shewanella putrefaciens CN-32 5081069 YP_001185292.1 CDS Sputcn32_3786 NC_009438.1 4395712 4396467 D KEGG: son:SO4611 hypothetical protein; hypothetical protein 4395712..4396467 Shewanella putrefaciens CN-32 5081070 YP_001185293.1 CDS Sputcn32_3787 NC_009438.1 4396545 4397090 D KEGG: son:SO4612 hypothetical protein; hypothetical protein 4396545..4397090 Shewanella putrefaciens CN-32 5081071 YP_001185294.1 CDS Sputcn32_3788 NC_009438.1 4397090 4398067 D PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly 4397090..4398067 Shewanella putrefaciens CN-32 5081072 YP_001185295.1 CDS Sputcn32_3789 NC_009438.1 4398082 4398987 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4398082..4398987 Shewanella putrefaciens CN-32 5081073 YP_001185296.1 CDS Sputcn32_3790 NC_009438.1 4398992 4399624 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: shm:Shewmr7_3873 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4398992..4399624 Shewanella putrefaciens CN-32 5081074 YP_001185297.1 CDS Sputcn32_3791 NC_009438.1 4399625 4400671 R PFAM: polysaccharide deacetylase; KEGG: she:Shewmr4_3801 polysaccharide deacetylase; polysaccharide deacetylase complement(4399625..4400671) Shewanella putrefaciens CN-32 5081075 YP_001185298.1 CDS Sputcn32_3792 NC_009438.1 4400694 4402064 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein 4400694..4402064 Shewanella putrefaciens CN-32 5081076 YP_001185299.1 CDS Sputcn32_3793 NC_009438.1 4402789 4403928 D KEGG: dsy:DSY0720 hypothetical protein; hypothetical protein 4402789..4403928 Shewanella putrefaciens CN-32 5081077 YP_001185300.1 CDS Sputcn32_3794 NC_009438.1 4404194 4404772 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein complement(4404194..4404772) Shewanella putrefaciens CN-32 5081128 YP_001185301.1 CDS Sputcn32_3795 NC_009438.1 4405012 4406760 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO4620 fumarate reductase, flavoprotein subunit precursor; flavocytochrome c complement(4405012..4406760) Shewanella putrefaciens CN-32 5081129 YP_001185302.1 CDS Sputcn32_3796 NC_009438.1 4406853 4407617 R KEGG: son:SO4621 hypothetical protein; hypothetical protein complement(4406853..4407617) Shewanella putrefaciens CN-32 5081130 YP_001185303.1 CDS Sputcn32_3797 NC_009438.1 4407797 4409038 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4622 sensor histidine kinase; ATPase domain-containing protein complement(4407797..4409038) Shewanella putrefaciens CN-32 5081131 YP_001185304.1 CDS Sputcn32_3798 NC_009438.1 4409025 4409702 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4623 DNA-binding response regulator; two component transcriptional regulator complement(4409025..4409702) Shewanella putrefaciens CN-32 5081132 YP_001185305.1 CDS Sputcn32_3799 NC_009438.1 4409705 4410451 R PFAM: regulatory protein, LuxR; KEGG: son:SO4624 transcriptional regulator, LuxR family; response regulator receiver protein complement(4409705..4410451) Shewanella putrefaciens CN-32 5081133 YP_001185306.1 CDS Sputcn32_3800 NC_009438.1 4410619 4411407 R KEGG: son:SO4625 competence protein ComF; competence protein ComF complement(4410619..4411407) Shewanella putrefaciens CN-32 5081134 YP_001185307.1 CDS Sputcn32_3801 NC_009438.1 4411511 4412233 D TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: shm:Shewmr7_3882 BioH protein; bioH protein 4411511..4412233 Shewanella putrefaciens CN-32 5081135 YP_001185308.1 CDS Sputcn32_3802 NC_009438.1 4412295 4412852 D KEGG: she:Shewmr4_3807 hypothetical protein; hypothetical protein 4412295..4412852 Shewanella putrefaciens CN-32 5081136 YP_001185309.1 CDS Sputcn32_3803 NC_009438.1 4412916 4414880 R PFAM: sulfatase; KEGG: shm:Shewmr7_3884 sulfatase; sulfatase complement(4412916..4414880) Shewanella putrefaciens CN-32 5081137 YP_001185310.1 CDS Sputcn32_3804 NC_009438.1 4415097 4417538 R PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein complement(4415097..4417538) Shewanella putrefaciens CN-32 5081138 YP_001185311.1 CDS Sputcn32_3805 NC_009438.1 4417626 4417970 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: she:Shewmr4_3810 transcription elongation factor GreB; GreA/GreB family elongation factor complement(4417626..4417970) Shewanella putrefaciens CN-32 5081139 YP_001185312.1 CDS Sputcn32_3806 NC_009438.1 4418126 4419427 D PFAM: phage integrase family protein; KEGG: shm:Shewmr7_3887 phage integrase family protein; phage integrase family protein 4418126..4419427 Shewanella putrefaciens CN-32 5081140 YP_001185313.1 CDS Sputcn32_3807 NC_009438.1 4419424 4423725 D KEGG: shm:Shewmr7_3888 phage integrase family protein; phage integrase family protein 4419424..4423725 Shewanella putrefaciens CN-32 5081141 YP_001185314.1 CDS Sputcn32_3808 NC_009438.1 4423727 4424347 D KEGG: shm:Shewmr7_3889 hypothetical protein; hypothetical protein 4423727..4424347 Shewanella putrefaciens CN-32 5081142 YP_001185315.1 CDS Sputcn32_3809 NC_009438.1 4424368 4424850 D TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shm:Shewmr7_3890 transcription elongation factor GreB; transcription elongation factor GreB 4424368..4424850 Shewanella putrefaciens CN-32 5081143 YP_001185316.1 CDS Sputcn32_3810 NC_009438.1 4425513 4425887 D KEGG: abo:ABO_1505 hypothetical protein; hypothetical protein 4425513..4425887 Shewanella putrefaciens CN-32 5081144 YP_001185317.1 CDS Sputcn32_3812 NC_009438.1 4426905 4427384 R KEGG: son:SO4533 ISSod10, transposase OrfA; ISSod10, transposase OrfA complement(4426905..4427384) Shewanella putrefaciens CN-32 5081146 YP_001185318.1 CDS Sputcn32_3813 NC_009438.1 4427659 4427973 R KEGG: hch:HCH_00506 hypothetical protein; hypothetical protein complement(4427659..4427973) Shewanella putrefaciens CN-32 5081147 YP_001185319.1 CDS Sputcn32_3814 NC_009438.1 4428071 4429309 R PFAM: major facilitator superfamily MFS_1; KEGG: sfr:Sfri_4001 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4428071..4429309) Shewanella putrefaciens CN-32 5081148 YP_001185320.1 CDS Sputcn32_3815 NC_009438.1 4429333 4430343 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(4429333..4430343) Shewanella putrefaciens CN-32 5081149 YP_001185321.1 CDS Sputcn32_3816 NC_009438.1 4430418 4430909 R SMART: protein tyrosine phosphatase, catalytic region; KEGG: ppu:PP_1926 phosphatase family protein, putative; dual specificity protein phosphatase complement(4430418..4430909) Shewanella putrefaciens CN-32 5081150 YP_001185322.1 CDS Sputcn32_3817 NC_009438.1 4430916 4431152 R KEGG: cps:CPS_3356 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(4430916..4431152) Shewanella putrefaciens CN-32 5081151 YP_001185323.1 CDS Sputcn32_3818 NC_009438.1 4431163 4432161 R PFAM: permease; KEGG: sfr:Sfri_1725 permease; permease complement(4431163..4432161) Shewanella putrefaciens CN-32 5081152 YP_001185324.1 CDS Sputcn32_3819 NC_009438.1 4432258 4432764 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO0533 arsenate reductase, putative; protein tyrosine phosphatase complement(4432258..4432764) Shewanella putrefaciens CN-32 5081153 YP_001185325.1 CDS Sputcn32_3820 NC_009438.1 4432843 4433190 R PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; regulatory protein ArsR complement(4432843..4433190) Shewanella putrefaciens CN-32 5081154 YP_001185326.1 CDS Sputcn32_3821 NC_009438.1 4433183 4433599 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfr:Sfri_4004 transcriptional regulator, ArsR family protein; protein tyrosine phosphatase complement(4433183..4433599) Shewanella putrefaciens CN-32 5081155 YP_001185327.1 CDS Sputcn32_3822 NC_009438.1 4433695 4433982 R PFAM: regulatory protein, ArsR; KEGG: son:SO0502 transcriptional regulator, ArsR family; regulatory protein ArsR complement(4433695..4433982) Shewanella putrefaciens CN-32 5081156 YP_001185328.1 CDS Sputcn32_3823 NC_009438.1 4434227 4435303 D PFAM: permease; KEGG: son:SO0503 hypothetical protein; permease 4434227..4435303 Shewanella putrefaciens CN-32 5081157 YP_001185329.1 CDS Sputcn32_3824 NC_009438.1 4435433 4436887 D PFAM: glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase 4435433..4436887 Shewanella putrefaciens CN-32 5081158 YP_001185330.1 CDS Sputcn32_3825 NC_009438.1 4436958 4437662 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4609 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin complement(4436958..4437662) Shewanella putrefaciens CN-32 5081159 YP_001185331.1 CDS Sputcn32_3826 NC_009438.1 4437674 4440238 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase; molybdopterin oxidoreductase complement(4437674..4440238) Shewanella putrefaciens CN-32 5081160 YP_001185332.1 CDS Sputcn32_3827 NC_009438.1 4440603 4440965 D PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dar:Daro_2638 arsenical resistance operon trans-acting repressor ArsD; arsenical resistance operon trans-acting repressor ArsD 4440603..4440965 Shewanella putrefaciens CN-32 5081161 YP_001185333.1 CDS Sputcn32_3828 NC_009438.1 4440988 4442754 D KEGG: dar:Daro_2637 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA 4440988..4442754 Shewanella putrefaciens CN-32 5081162 YP_001185334.1 CDS Sputcn32_3829 NC_009438.1 4442825 4444108 D TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein 4442825..4444108 Shewanella putrefaciens CN-32 5081163 YP_001185335.1 CDS Sputcn32_3830 NC_009438.1 4444229 4444705 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sbo:SBO_3501 arsenate reductase; arsenate reductase 4444229..4444705 Shewanella putrefaciens CN-32 5081164 YP_001185336.1 CDS Sputcn32_3831 NC_009438.1 4444819 4447893 R PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_0882 acriflavin resistance protein; acriflavin resistance protein complement(4444819..4447893) Shewanella putrefaciens CN-32 5081165 YP_001185337.1 CDS Sputcn32_3832 NC_009438.1 4447890 4449014 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC2064 cation efflux system protein; RND family efflux transporter MFP subunit complement(4447890..4449014) Shewanella putrefaciens CN-32 5081166 YP_001185338.1 CDS Sputcn32_3833 NC_009438.1 4449059 4449757 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mhu:Mhun_0868 putative cytochrome c biogenesis protein; cytochrome c biogenesis protein, transmembrane region complement(4449059..4449757) Shewanella putrefaciens CN-32 5081167 YP_001185339.1 CDS Sputcn32_3834 NC_009438.1 4449750 4450283 R KEGG: mhu:Mhun_0869 hypothetical protein; hypothetical protein complement(4449750..4450283) Shewanella putrefaciens CN-32 5081168 YP_001185340.1 CDS Sputcn32_3835 NC_009438.1 4450302 4450544 R TIGRFAM: redox-active disulfide protein 2; KEGG: plt:Plut_1705 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(4450302..4450544) Shewanella putrefaciens CN-32 5081169 YP_001185341.1 CDS Sputcn32_3836 NC_009438.1 4450605 4450913 R PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; regulatory protein ArsR complement(4450605..4450913) Shewanella putrefaciens CN-32 5081170 YP_001185342.1 CDS Sputcn32_3837 NC_009438.1 4451424 4451630 R PFAM: helix-turn-helix domain protein; KEGG: sfr:Sfri_3420 transcriptional regulator, XRE family protein; helix-turn-helix domain-containing protein complement(4451424..4451630) Shewanella putrefaciens CN-32 5081171 YP_001185343.1 CDS Sputcn32_3838 NC_009438.1 4451763 4452302 D KEGG: sfr:Sfri_3419 hypothetical protein; hypothetical protein 4451763..4452302 Shewanella putrefaciens CN-32 5081172 YP_001185344.1 CDS Sputcn32_3839 NC_009438.1 4452307 4453722 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 4452307..4453722 Shewanella putrefaciens CN-32 5081173 YP_001185345.1 CDS Sputcn32_3840 NC_009438.1 4453964 4456012 R KEGG: dar:Daro_2667 hypothetical protein; hypothetical protein complement(4453964..4456012) Shewanella putrefaciens CN-32 5081174 YP_001185346.1 CDS Sputcn32_3841 NC_009438.1 4456449 4457282 R PFAM: Integrase, catalytic region; KEGG: vch:VCA0791 transposase OrfAB, subunit B; integrase catalytic subunit complement(4456449..4457282) Shewanella putrefaciens CN-32 5081175 YP_001185347.1 CDS Sputcn32_3842 NC_009438.1 4457321 4457632 R PFAM: transposase IS3/IS911 family protein; KEGG: vch:VCA0792 transposase OrfAB, subunit A; transposase IS3/IS911 family protein complement(4457321..4457632) Shewanella putrefaciens CN-32 5081176 YP_001185348.1 CDS Sputcn32_3843 NC_009438.1 4457833 4458744 R KEGG: dar:Daro_2669 hypothetical protein; hypothetical protein complement(4457833..4458744) Shewanella putrefaciens CN-32 5081177 YP_001185349.1 CDS Sputcn32_3844 NC_009438.1 4459039 4462101 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bja:bll8094 hypothetical protein; type III restriction enzyme, res subunit complement(4459039..4462101) Shewanella putrefaciens CN-32 5081178 YP_001185350.1 CDS Sputcn32_3845 NC_009438.1 4462348 4462548 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: shm:Shewmr7_3901 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(4462348..4462548) Shewanella putrefaciens CN-32 5081179 YP_001185351.1 CDS ompR NC_009438.1 4462925 4463650 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4462925..4463650 Shewanella putrefaciens CN-32 5081228 YP_001185352.1 CDS envZ NC_009438.1 4463693 4465009 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4463693..4465009 Shewanella putrefaciens CN-32 5081229 YP_001185353.1 CDS Sputcn32_3848 NC_009438.1 4465138 4467120 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: shm:Shewmr7_3904 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4465138..4467120 Shewanella putrefaciens CN-32 5081230 YP_001185354.1 CDS Sputcn32_3849 NC_009438.1 4467201 4467674 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: shm:Shewmr7_3905 redoxin domain protein; redoxin domain-containing protein complement(4467201..4467674) Shewanella putrefaciens CN-32 5081231 YP_001185355.1 CDS Sputcn32_3850 NC_009438.1 4467756 4468700 R KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein complement(4467756..4468700) Shewanella putrefaciens CN-32 5081232 YP_001185356.1 CDS Sputcn32_3851 NC_009438.1 4469105 4469407 D PFAM: Propeptide, PepSY amd peptidase M4; KEGG: shm:Shewmr7_3907 propeptide, PepSY amd peptidase M4; peptidase 4469105..4469407 Shewanella putrefaciens CN-32 5081233 YP_001185357.1 CDS Sputcn32_3852 NC_009438.1 4469410 4470105 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator 4469410..4470105 Shewanella putrefaciens CN-32 5081234 YP_001185358.1 CDS Sputcn32_3853 NC_009438.1 4470098 4471462 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4648 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4470098..4471462 Shewanella putrefaciens CN-32 5081235 YP_001185359.1 CDS Sputcn32_3854 NC_009438.1 4471602 4473074 D KEGG: shm:Shewmr7_3910 hypothetical protein; hypothetical protein 4471602..4473074 Shewanella putrefaciens CN-32 5081236 YP_001185360.1 CDS Sputcn32_3855 NC_009438.1 4473140 4473616 R KEGG: son:SO4656 hypothetical protein; hypothetical protein complement(4473140..4473616) Shewanella putrefaciens CN-32 5081237 YP_001185361.1 CDS Sputcn32_3856 NC_009438.1 4473695 4477345 R KEGG: shm:Shewmr7_3912 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase complement(4473695..4477345) Shewanella putrefaciens CN-32 5081238 YP_001185362.1 CDS Sputcn32_3857 NC_009438.1 4477746 4478135 D KEGG: she:Shewmr4_3822 hypothetical protein; hypothetical protein 4477746..4478135 Shewanella putrefaciens CN-32 5081239 YP_001185363.1 CDS Sputcn32_3858 NC_009438.1 4478325 4479368 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: she:Shewmr4_3823 ubiquinol oxidase, subunit II; ubiquinol oxidase subunit II 4478325..4479368 Shewanella putrefaciens CN-32 5081240 YP_001185364.1 CDS Sputcn32_3859 NC_009438.1 4479371 4481350 D PFAM: cytochrome c oxidase, subunit I; KEGG: shm:Shewmr7_3915 cytochrome-c oxidase; cytochrome-c oxidase 4479371..4481350 Shewanella putrefaciens CN-32 5081241 YP_001185365.1 CDS Sputcn32_3860 NC_009438.1 4481352 4481972 D PFAM: cytochrome c oxidase, subunit III; KEGG: she:Shewmr4_3825 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 4481352..4481972 Shewanella putrefaciens CN-32 5081242 YP_001185366.1 CDS Sputcn32_3861 NC_009438.1 4481972 4482313 D PFAM: cytochrome C oxidase subunit IV; KEGG: shm:Shewmr7_3917 cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV 4481972..4482313 Shewanella putrefaciens CN-32 5081243 YP_001185367.1 CDS Sputcn32_3862 NC_009438.1 4482327 4483274 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4482327..4483274 Shewanella putrefaciens CN-32 5081244 YP_001185368.1 CDS Sputcn32_3863 NC_009438.1 4483413 4485614 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0950 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(4483413..4485614) Shewanella putrefaciens CN-32 5081245 YP_001185369.1 CDS Sputcn32_3864 NC_009438.1 4485824 4487221 R PFAM: amino acid permease-associated region; Amino acid transporter, transmembrane; KEGG: pmu:PM0162 arginine/ornithine antiporter, putative; amino acid permease-associated protein complement(4485824..4487221) Shewanella putrefaciens CN-32 5081246 YP_001185370.1 CDS Sputcn32_3865 NC_009438.1 4487231 4488133 R PFAM: homocysteine S-methyltransferase; KEGG: ppu:PP_0658 homocysteine S-methyltransferase family protein; homocysteine S-methyltransferase complement(4487231..4488133) Shewanella putrefaciens CN-32 5081247 YP_001185371.1 CDS Sputcn32_3866 NC_009438.1 4488502 4490031 R PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4488502..4490031) Shewanella putrefaciens CN-32 5081248 YP_001185372.1 CDS Sputcn32_3867 NC_009438.1 4490285 4490848 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4490285..4490848 Shewanella putrefaciens CN-32 5081249 YP_001185373.1 CDS Sputcn32_3868 NC_009438.1 4491134 4492084 D PFAM: conserved hypothetical protein 698; KEGG: she:Shewmr4_3853 conserved hypothetical protein 698; hypothetical protein 4491134..4492084 Shewanella putrefaciens CN-32 5081250 YP_001185374.1 CDS Sputcn32_3869 NC_009438.1 4492105 4492257 R KEGG: shm:Shewmr7_3947 hypothetical protein; hypothetical protein complement(4492105..4492257) Shewanella putrefaciens CN-32 5081251 YP_001185375.1 CDS Sputcn32_3870 NC_009438.1 4492500 4493123 R PFAM: Paraquat-inducible protein A; KEGG: shm:Shewmr7_3953 paraquat-inducible protein A; paraquat-inducible protein A complement(4492500..4493123) Shewanella putrefaciens CN-32 5081252 YP_001185376.1 CDS Sputcn32_3871 NC_009438.1 4493228 4494418 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase complement(4493228..4494418) Shewanella putrefaciens CN-32 5081253 YP_001185377.1 CDS Sputcn32_3872 NC_009438.1 4494683 4496029 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: she:Shewmr4_3866 ABC transporter related; ABC transporter-like protein complement(4494683..4496029) Shewanella putrefaciens CN-32 5081254 YP_001185378.1 CDS Sputcn32_3873 NC_009438.1 4496663 4498021 D TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: she:Shewmr4_3868 isochorismate synthases; isochorismate synthase 4496663..4498021 Shewanella putrefaciens CN-32 5081255 YP_001185379.1 CDS Sputcn32_3874 NC_009438.1 4498055 4498789 R KEGG: she:Shewmr4_3869 hypothetical protein; hypothetical protein complement(4498055..4498789) Shewanella putrefaciens CN-32 5081256 YP_001185380.1 CDS Sputcn32_3875 NC_009438.1 4499030 4499689 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 4499030..4499689 Shewanella putrefaciens CN-32 5081257 YP_001185381.1 CDS Sputcn32_3876 NC_009438.1 4499789 4500247 D KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family; acetyltransferase 4499789..4500247 Shewanella putrefaciens CN-32 5081258 YP_001185382.1 CDS Sputcn32_3877 NC_009438.1 4500476 4502599 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3965 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4500476..4502599) Shewanella putrefaciens CN-32 5081259 YP_001185383.1 CDS Sputcn32_3878 NC_009438.1 4502601 4504031 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_3966 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(4502601..4504031) Shewanella putrefaciens CN-32 5081260 YP_001185384.1 CDS Sputcn32_3879 NC_009438.1 4504270 4505094 D PFAM: extracellular solute-binding protein, family 1; KEGG: she:Shewmr4_3874 extracellular solute-binding protein, family 1; extracellular solute-binding protein 4504270..4505094 Shewanella putrefaciens CN-32 5081261 YP_001185385.1 CDS Sputcn32_3880 NC_009438.1 4505091 4505798 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_3968 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4505091..4505798 Shewanella putrefaciens CN-32 5081262 YP_001185386.1 CDS Sputcn32_3881 NC_009438.1 4505802 4506512 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shm:Shewmr7_3969 ABC transporter related; ABC transporter-like protein 4505802..4506512 Shewanella putrefaciens CN-32 5081263 YP_001185387.1 CDS Sputcn32_3882 NC_009438.1 4506496 4507083 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: shm:Shewmr7_3970 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4506496..4507083 Shewanella putrefaciens CN-32 5081264 YP_001185388.1 CDS Sputcn32_3883 NC_009438.1 4507117 4508916 D TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: she:Shewmr4_3878 molybdopterin-guanine dinucleotide biosynthesis protein B; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4507117..4508916 Shewanella putrefaciens CN-32 5081265 YP_001185389.1 CDS Sputcn32_3884 NC_009438.1 4508933 4509916 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4508933..4509916 Shewanella putrefaciens CN-32 5081266 YP_001185390.1 CDS Sputcn32_3885 NC_009438.1 4510003 4510467 D KEGG: son:SO4725 hypothetical protein; hypothetical protein 4510003..4510467 Shewanella putrefaciens CN-32 5081267 YP_001185391.1 CDS Sputcn32_3886 NC_009438.1 4510500 4511315 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4510500..4511315 Shewanella putrefaciens CN-32 5081268 YP_001185392.1 CDS Sputcn32_3887 NC_009438.1 4511376 4512851 R KEGG: shm:Shewmr7_3982 hypothetical protein; hypothetical protein complement(4511376..4512851) Shewanella putrefaciens CN-32 5081269 YP_001185393.1 CDS coaD NC_009438.1 4512942 4513433 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(4512942..4513433) Shewanella putrefaciens CN-32 5081270 YP_001185394.1 CDS Sputcn32_3889 NC_009438.1 4513814 4515655 D PFAM: sulfatase; KEGG: vvu:VV10813 predicted hydrolase of alkaline phosphatase superfamily; sulfatase 4513814..4515655 Shewanella putrefaciens CN-32 5081271 YP_001185395.1 CDS Sputcn32_3890 NC_009438.1 4515722 4516267 R KEGG: sbo:SBO_0865 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(4515722..4516267) Shewanella putrefaciens CN-32 5081272 YP_001185396.1 CDS Sputcn32_3891 NC_009438.1 4516313 4517197 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sfr:Sfri_2828 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(4516313..4517197) Shewanella putrefaciens CN-32 5081273 YP_001185397.1 CDS Sputcn32_3892 NC_009438.1 4517310 4518077 R PFAM: glycosyl transferase, family 2; KEGG: ppr:PBPRA0213 putative lipopolysaccharide biosynthesis glycosyltransferase; glycosyl transferase family protein complement(4517310..4518077) Shewanella putrefaciens CN-32 5081274 YP_001185398.1 CDS Sputcn32_3893 NC_009438.1 4518116 4519174 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: shm:Shewmr7_3986 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(4518116..4519174) Shewanella putrefaciens CN-32 5081275 YP_001185399.1 CDS Sputcn32_3894 NC_009438.1 4519488 4520663 D PFAM: UDP-galactopyranose mutase; KEGG: atc:AGR_L_1762 probable UDP-galactopyranose mutase; UDP-galactopyranose mutase 4519488..4520663 Shewanella putrefaciens CN-32 5081276 YP_001185400.1 CDS Sputcn32_3895 NC_009438.1 4520665 4521465 D KEGG: sme:SMb21065 hypothetical protein; hypothetical protein 4520665..4521465 Shewanella putrefaciens CN-32 5081277 YP_001185401.1 CDS Sputcn32_3896 NC_009438.1 4521531 4522241 R PFAM: glycosyl transferase, family 25; KEGG: vpa:VP0210 putative Lex2B; glycosyl transferase family protein complement(4521531..4522241) Shewanella putrefaciens CN-32 5081278 YP_001185402.1 CDS Sputcn32_3897 NC_009438.1 4522312 4523355 R PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein complement(4522312..4523355) Shewanella putrefaciens CN-32 5081327 YP_001185403.1 CDS Sputcn32_3898 NC_009438.1 4523454 4524215 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4523454..4524215 Shewanella putrefaciens CN-32 5081328 YP_001185404.1 CDS Sputcn32_3899 NC_009438.1 4524256 4525521 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; 3-deoxy-D-manno-octulosonic-acid transferase complement(4524256..4525521) Shewanella putrefaciens CN-32 5081329 YP_001185405.1 CDS Sputcn32_3900 NC_009438.1 4525721 4526368 D PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4525721..4526368 Shewanella putrefaciens CN-32 5081330 YP_001185406.1 CDS Sputcn32_3901 NC_009438.1 4526664 4527857 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4526664..4527857 Shewanella putrefaciens CN-32 5081331 YP_001185407.1 CDS tdh NC_009438.1 4527869 4528894 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4527869..4528894 Shewanella putrefaciens CN-32 5081332 YP_001185408.1 CDS Sputcn32_3903 NC_009438.1 4528932 4529303 D PFAM: Rhodanese domain protein; KEGG: shm:Shewmr7_3994 rhodanese domain protein; rhodanese domain-containing protein 4528932..4529303 Shewanella putrefaciens CN-32 5081333 YP_001185409.1 CDS Sputcn32_3904 NC_009438.1 4529300 4530145 D PFAM: Rhomboid family protein; KEGG: shm:Shewmr7_3995 rhomboid family protein; rhomboid family protein 4529300..4530145 Shewanella putrefaciens CN-32 5081334 YP_001185410.1 CDS Sputcn32_3905 NC_009438.1 4530238 4530894 R PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain complement(4530238..4530894) Shewanella putrefaciens CN-32 5081335 YP_001185411.1 CDS Sputcn32_3906 NC_009438.1 4531281 4534049 D KEGG: shm:Shewmr7_3997 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 4531281..4534049 Shewanella putrefaciens CN-32 5081336 YP_001185412.1 CDS engB NC_009438.1 4534861 4535520 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4534861..4535520) Shewanella putrefaciens CN-32 5081337 YP_001185413.1 CDS Sputcn32_3908 NC_009438.1 4535690 4536313 D PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 4535690..4536313 Shewanella putrefaciens CN-32 5081338 YP_001185414.1 CDS Sputcn32_3909 NC_009438.1 4536472 4536714 R hypothetical protein complement(4536472..4536714) Shewanella putrefaciens CN-32 5081339 YP_001185415.1 CDS Sputcn32_3910 NC_009438.1 4537132 4537770 D KEGG: son:SO4727 hypothetical protein; hypothetical protein 4537132..4537770 Shewanella putrefaciens CN-32 5081340 YP_001185416.1 CDS Sputcn32_3911 NC_009438.1 4537861 4538412 D PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein; hypothetical protein 4537861..4538412 Shewanella putrefaciens CN-32 5081341 YP_001185417.1 CDS Sputcn32_3912 NC_009438.1 4538482 4538949 D KEGG: shm:Shewmr7_4002 hypothetical protein; hypothetical protein 4538482..4538949 Shewanella putrefaciens CN-32 5081342 YP_001185418.1 CDS Sputcn32_3913 NC_009438.1 4539234 4540574 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4539234..4540574 Shewanella putrefaciens CN-32 5081343 YP_001185419.1 CDS Sputcn32_3914 NC_009438.1 4540659 4541654 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(4540659..4541654) Shewanella putrefaciens CN-32 5081344 YP_001185420.1 CDS Sputcn32_3915 NC_009438.1 4541865 4543676 D PFAM: protein of unknown function DUF885; KEGG: shm:Shewmr7_4005 protein of unknown function DUF885; hypothetical protein 4541865..4543676 Shewanella putrefaciens CN-32 5081345 YP_001185421.1 CDS Sputcn32_3916 NC_009438.1 4543772 4544755 D PFAM: alpha/beta hydrolase fold; KEGG: she:Shewmr4_3914 alpha/beta hydrolase fold; alpha/beta hydrolase fold domain-containing protein 4543772..4544755 Shewanella putrefaciens CN-32 5081346 YP_001185422.1 CDS Sputcn32_3917 NC_009438.1 4544712 4547162 R KEGG: shm:Shewmr7_4007 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(4544712..4547162) Shewanella putrefaciens CN-32 5081347 YP_001185423.1 CDS Sputcn32_3918 NC_009438.1 4553122 4554549 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(4553122..4554549) Shewanella putrefaciens CN-32 5081351 YP_001185424.1 CDS Sputcn32_3919 NC_009438.1 4554641 4554991 D KEGG: she:Shewmr4_3917 hypothetical protein; hypothetical protein 4554641..4554991 Shewanella putrefaciens CN-32 5081352 YP_001185425.1 CDS Sputcn32_3920 NC_009438.1 4555110 4556012 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4555110..4556012 Shewanella putrefaciens CN-32 5081353 YP_001185426.1 CDS Sputcn32_3921 NC_009438.1 4556196 4556399 D KEGG: she:Shewmr4_3919 hypothetical protein; hypothetical protein 4556196..4556399 Shewanella putrefaciens CN-32 5081354 YP_001185427.1 CDS Sputcn32_3922 NC_009438.1 4556700 4560485 R KEGG: rxy:Rxyl_1790 superfamily I DNA and RNA helicases and helicase subunits-like protein; superfamily I DNA/RNA helicase complement(4556700..4560485) Shewanella putrefaciens CN-32 5081355 YP_001185428.1 CDS Sputcn32_3923 NC_009438.1 4560533 4560817 D PFAM: transposase IS3/IS911 family protein; KEGG: vpa:VP1788 putative transposase; transposase IS3/IS911 family protein 4560533..4560817 Shewanella putrefaciens CN-32 5081356 YP_001185429.1 CDS Sputcn32_3924 NC_009438.1 4560868 4561683 D PFAM: Integrase, catalytic region; KEGG: vpa:VP1787 putative transposase; integrase catalytic subunit 4560868..4561683 Shewanella putrefaciens CN-32 5081357 YP_001185430.1 CDS Sputcn32_3925 NC_009438.1 4561646 4562197 R hypothetical protein complement(4561646..4562197) Shewanella putrefaciens CN-32 5081358 YP_001185431.1 CDS Sputcn32_3926 NC_009438.1 4562360 4563397 R KEGG: sth:STH2261 putative DNA modification methylase; putative DNA modification methylase complement(4562360..4563397) Shewanella putrefaciens CN-32 5081359 YP_001185432.1 CDS Sputcn32_3927 NC_009438.1 4563564 4563926 D PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 4563564..4563926 Shewanella putrefaciens CN-32 5081360 YP_001185433.1 CDS Sputcn32_3928 NC_009438.1 4564275 4564994 R hypothetical protein complement(4564275..4564994) Shewanella putrefaciens CN-32 5081361 YP_001185434.1 CDS Sputcn32_3929 NC_009438.1 4564981 4565766 R hypothetical protein complement(4564981..4565766) Shewanella putrefaciens CN-32 5081362 YP_001185435.1 CDS Sputcn32_3930 NC_009438.1 4566423 4567994 R KEGG: ssn:SSO_3895 transposition regulatory protein; transposition regulatory protein complement(4566423..4567994) Shewanella putrefaciens CN-32 5081363 YP_001185436.1 CDS Sputcn32_3931 NC_009438.1 4568042 4569553 R KEGG: ssn:SSO_3894 transposition protein; transposition protein complement(4568042..4569553) Shewanella putrefaciens CN-32 5081364 YP_001185437.1 CDS Sputcn32_3932 NC_009438.1 4569771 4570073 R hypothetical protein complement(4569771..4570073) Shewanella putrefaciens CN-32 5081365 YP_001185438.1 CDS Sputcn32_3933 NC_009438.1 4570180 4570566 D hypothetical protein 4570180..4570566 Shewanella putrefaciens CN-32 5081366 YP_001185439.1 CDS Sputcn32_3934 NC_009438.1 4570690 4572330 R SMART: AAA ATPase; KEGG: ssn:SSO_3893 ATP-binding protein; ATPase AAA complement(4570690..4572330) Shewanella putrefaciens CN-32 5081367 YP_001185440.1 CDS Sputcn32_3935 NC_009438.1 4572327 4574420 R KEGG: ssn:SSO_3892 putative transposase; putative transposase complement(4572327..4574420) Shewanella putrefaciens CN-32 5081368 YP_001185441.1 CDS Sputcn32_3937 NC_009438.1 4575639 4576766 D KEGG: eba:ebA515 hypothetical protein; hypothetical protein 4575639..4576766 Shewanella putrefaciens CN-32 5081370 YP_001185442.1 CDS Sputcn32_3938 NC_009438.1 4576732 4578279 D KEGG: eba:ebA514 hypothetical protein; hypothetical protein 4576732..4578279 Shewanella putrefaciens CN-32 5081371 YP_001185443.1 CDS Sputcn32_3939 NC_009438.1 4578385 4580286 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT1913 DNA methylase, putative; DNA methylase N-4/N-6 domain-containing protein 4578385..4580286 Shewanella putrefaciens CN-32 5081372 YP_001185444.1 CDS Sputcn32_3940 NC_009438.1 4580323 4581363 R PFAM: Integrase, catalytic region; KEGG: son:SOA0151 ISSod13, transposase; integrase catalytic subunit complement(4580323..4581363) Shewanella putrefaciens CN-32 5081373 YP_001185445.1 CDS Sputcn32_3941 NC_009438.1 4581480 4582835 R KEGG: cte:CT1914 hypothetical protein; hypothetical protein complement(4581480..4582835) Shewanella putrefaciens CN-32 5081374 YP_001185446.1 CDS Sputcn32_3942 NC_009438.1 4582838 4585003 R KEGG: cte:CT1915 hypothetical protein; hypothetical protein complement(4582838..4585003) Shewanella putrefaciens CN-32 5081375 YP_001185447.1 CDS Sputcn32_3943 NC_009438.1 4585157 4586776 R KEGG: ilo:IL2609 transposon Tn7 transposition transposition regulatory protein TnsE; hypothetical protein complement(4585157..4586776) Shewanella putrefaciens CN-32 5081376 YP_001185448.1 CDS Sputcn32_3944 NC_009438.1 4586776 4588293 R KEGG: ilo:IL2610 transposon Tn7 transposition protein TnsD; transposon Tn7 transposition protein TnsD complement(4586776..4588293) Shewanella putrefaciens CN-32 5081427 YP_001185449.1 CDS Sputcn32_3945 NC_009438.1 4588296 4589906 R KEGG: ilo:IL2611 transposon Tn7 transposition protein TnsC; transposon Tn7 transposition protein TnsC complement(4588296..4589906) Shewanella putrefaciens CN-32 5081428 YP_001185450.1 CDS Sputcn32_3946 NC_009438.1 4589899 4591989 R PFAM: Integrase, catalytic region; KEGG: ilo:IL2612 transposon Tn7 transposition protein TnsB; integrase catalytic subunit complement(4589899..4591989) Shewanella putrefaciens CN-32 5081429 YP_001185451.1 CDS Sputcn32_3947 NC_009438.1 4591976 4592803 R KEGG: ilo:IL2613 transposon Tn7 transposition protein TnsA; transposon Tn7 transposition protein TnsA complement(4591976..4592803) Shewanella putrefaciens CN-32 5081430 YP_001185452.1 CDS Sputcn32_3948 NC_009438.1 4593046 4594074 R PFAM: protein of unknown function DUF1526; KEGG: cef:CE0419 hypothetical protein; hypothetical protein complement(4593046..4594074) Shewanella putrefaciens CN-32 5081431 YP_001185453.1 CDS Sputcn32_3949 NC_009438.1 4594221 4594490 R hypothetical protein complement(4594221..4594490) Shewanella putrefaciens CN-32 5081432 YP_001185454.1 CDS Sputcn32_3950 NC_009438.1 4594624 4595934 R hypothetical protein complement(4594624..4595934) Shewanella putrefaciens CN-32 5081433 YP_001185455.1 CDS Sputcn32_3951 NC_009438.1 4596272 4598101 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4596272..4598101) Shewanella putrefaciens CN-32 5081434 YP_001185456.1 CDS Sputcn32_3952 NC_009438.1 4598146 4598916 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(4598146..4598916) Shewanella putrefaciens CN-32 5081435 YP_001185457.1 CDS Sputcn32_3953 NC_009438.1 4599117 4601222 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor complement(4599117..4601222) Shewanella putrefaciens CN-32 5081436 YP_001185458.1 CDS Sputcn32_3954 NC_009438.1 4601499 4602863 R KEGG: she:Shewmr4_3923 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase complement(4601499..4602863) Shewanella putrefaciens CN-32 5081437 YP_001185459.1 CDS atpC NC_009438.1 4603061 4603489 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4603061..4603489) Shewanella putrefaciens CN-32 5081438 YP_001185460.1 CDS Sputcn32_3956 NC_009438.1 4603524 4604915 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4603524..4604915) Shewanella putrefaciens CN-32 5081439 YP_001185461.1 CDS Sputcn32_3957 NC_009438.1 4604951 4605811 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4604951..4605811) Shewanella putrefaciens CN-32 5081440 YP_001185462.1 CDS Sputcn32_3958 NC_009438.1 4605862 4607403 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4605862..4607403) Shewanella putrefaciens CN-32 5081441 YP_001185463.1 CDS Sputcn32_3959 NC_009438.1 4607418 4607951 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4607418..4607951) Shewanella putrefaciens CN-32 5081442 YP_001185464.1 CDS Sputcn32_3960 NC_009438.1 4607967 4608437 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4607967..4608437) Shewanella putrefaciens CN-32 5081443 YP_001185465.1 CDS Sputcn32_3961 NC_009438.1 4608465 4608719 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4608465..4608719) Shewanella putrefaciens CN-32 5081444 YP_001185466.1 CDS Sputcn32_3962 NC_009438.1 4608755 4609576 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4608755..4609576) Shewanella putrefaciens CN-32 5081445 YP_001185467.1 CDS Sputcn32_3963 NC_009438.1 4609589 4610044 R PFAM: ATP synthase I chain; KEGG: shm:Shewmr7_4024 ATP synthase I chain; ATP synthase I chain complement(4609589..4610044) Shewanella putrefaciens CN-32 5081446 YP_001185468.1 CDS Sputcn32_3964 NC_009438.1 4610198 4611076 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: shm:Shewmr7_4025 ParB-like partition proteins; parB-like partition protein complement(4610198..4611076) Shewanella putrefaciens CN-32 5081447 YP_001185469.1 CDS Sputcn32_3965 NC_009438.1 4611086 4611874 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: shm:Shewmr7_4026 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(4611086..4611874) Shewanella putrefaciens CN-32 5081448 YP_001185470.1 CDS gidB NC_009438.1 4611949 4612569 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(4611949..4612569) Shewanella putrefaciens CN-32 5081449 YP_001185471.1 CDS Sputcn32_3967 NC_009438.1 4612687 4614576 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4612687..4614576) Shewanella putrefaciens CN-32 5081450 YP_001185472.1 CDS Sputcn32_3968 NC_009438.1 4615016 4615477 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(4615016..4615477) Shewanella putrefaciens CN-32 5081451 YP_001185473.1 CDS Sputcn32_3969 NC_009438.1 4615637 4617190 D PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: she:Shewmr4_3938 TGF-beta receptor, type I/II extracellular region; TGF-beta receptor, type I/II extracellular region 4615637..4617190 Shewanella putrefaciens CN-32 5081452 YP_001185474.1 CDS Sputcn32_3971 NC_009438.1 4620452 4621609 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rso:RSp0313 probable multidrug efflux system protein; RND family efflux transporter MFP subunit complement(4620452..4621609) Shewanella putrefaciens CN-32 5081454 YP_001185475.1 CDS Sputcn32_3972 NC_009438.1 4621775 4622503 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RS05454 probable two component response regulator transcription regulator protein; two component transcriptional regulator 4621775..4622503 Shewanella putrefaciens CN-32 5081455 YP_001185476.1 CDS Sputcn32_3973 NC_009438.1 4622500 4623594 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rru:Rru_A2930 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4622500..4623594 Shewanella putrefaciens CN-32 5081456 YP_001185477.1 CDS Sputcn32_3974 NC_009438.1 4623937 4624158 D KEGG: sdn:Sden_3021 integrase, catalytic region; hypothetical protein 4623937..4624158 Shewanella putrefaciens CN-32 5081457 YP_001185478.1 CDS Sputcn32_3976 NC_009438.1 4624844 4625686 D hypothetical protein 4624844..4625686 Shewanella putrefaciens CN-32 5081459 YP_001185479.1 CDS Sputcn32_3977 NC_009438.1 4625683 4626114 D hypothetical protein 4625683..4626114 Shewanella putrefaciens CN-32 5081460 YP_001185480.1 CDS Sputcn32_3978 NC_009438.1 4626111 4626623 D hypothetical protein 4626111..4626623 Shewanella putrefaciens CN-32 5081461 YP_001185481.1 CDS Sputcn32_3979 NC_009438.1 4626756 4627382 D PFAM: Resolvase, N-terminal domain; KEGG: atc:AGR_L_1981 hypothetical protein; resolvase domain-containing protein 4626756..4627382 Shewanella putrefaciens CN-32 5081462 YP_001185482.1 CDS Sputcn32_3980 NC_009438.1 4627574 4627804 D KEGG: hch:HCH_05031 predicted transcriptional regulator; transcriptional regulator 4627574..4627804 Shewanella putrefaciens CN-32 5081463 YP_001185483.1 CDS Sputcn32_3981 NC_009438.1 4627801 4629300 D PFAM: N-6 DNA methylase; KEGG: vvy:VV2208 type I restriction-modification system methyltransferase subunit; N-6 DNA methylase 4627801..4629300 Shewanella putrefaciens CN-32 5081464 YP_001185484.1 CDS Sputcn32_3982 NC_009438.1 4629297 4629926 D KEGG: cch:Cag_1884 hypothetical protein; hypothetical protein 4629297..4629926 Shewanella putrefaciens CN-32 5081465 YP_001185485.1 CDS Sputcn32_3983 NC_009438.1 4629919 4631373 D PFAM: AAA-4 family protein; KEGG: cch:Cag_1885 putative transcriptional regulator; putative transcriptional regulator 4629919..4631373 Shewanella putrefaciens CN-32 5081466 YP_001185486.1 CDS Sputcn32_3984 NC_009438.1 4631370 4632887 D PFAM: N-6 DNA methylase; KEGG: vvy:VV2206 type I restriction-modification system methyltransferase subunit; N-6 DNA methylase 4631370..4632887 Shewanella putrefaciens CN-32 5081467 YP_001185487.1 CDS Sputcn32_3985 NC_009438.1 4632887 4634092 D PFAM: restriction modification system DNA specificity domain; KEGG: vfi:VFA0538 type I restriction-modification system specificity subunit; restriction modification system DNA specificity subunit 4632887..4634092 Shewanella putrefaciens CN-32 5081468 YP_001185488.1 CDS Sputcn32_3986 NC_009438.1 4634093 4637155 D KEGG: vvy:VV2204 putative type I site-specific restriction-modification system, R (restriction) subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 4634093..4637155 Shewanella putrefaciens CN-32 5081469 YP_001185489.1 CDS Sputcn32_3987 NC_009438.1 4637195 4639606 D KEGG: aci:ACIAD0152 hypothetical protein; hypothetical protein 4637195..4639606 Shewanella putrefaciens CN-32 5081470 YP_001185490.1 CDS Sputcn32_3988 NC_009438.1 4639658 4640692 D KEGG: eci:UTI89_C4212 putative cytoplasmic protein; putative cytoplasmic protein 4639658..4640692 Shewanella putrefaciens CN-32 5081471 YP_001185491.1 CDS Sputcn32_3989 NC_009438.1 4640750 4641334 R hypothetical protein complement(4640750..4641334) Shewanella putrefaciens CN-32 5081472 YP_001185492.1 CDS Sputcn32_3990 NC_009438.1 4642062 4643732 D KEGG: shm:Shewmr7_0346 superfamily II helicase and inactivated derivatives-like protein; superfamily II helicase 4642062..4643732 Shewanella putrefaciens CN-32 5081473 YP_001185493.1 CDS Sputcn32_3991 NC_009438.1 4643792 4644136 D TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: bfr:BF2790 putative excisionase; phage transcriptional regulator AlpA 4643792..4644136 Shewanella putrefaciens CN-32 5081474 YP_001185494.1 CDS Sputcn32_3992 NC_009438.1 4644830 4645162 R KEGG: sfr:Sfri_2519 hypothetical protein; hypothetical protein complement(4644830..4645162) Shewanella putrefaciens CN-32 5081475 YP_001185495.1 CDS Sputcn32_3993 NC_009438.1 4645185 4645718 R KEGG: sfr:Sfri_2520 hypothetical protein; hypothetical protein complement(4645185..4645718) Shewanella putrefaciens CN-32 5081476 YP_001185496.1 CDS Sputcn32_3994 NC_009438.1 4645739 4646434 R KEGG: sfr:Sfri_2521 hypothetical protein; hypothetical protein complement(4645739..4646434) Shewanella putrefaciens CN-32 5081477 YP_001185497.1 CDS Sputcn32_3995 NC_009438.1 4646424 4649567 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_2095 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(4646424..4649567) Shewanella putrefaciens CN-32 5081504 YP_001185498.1 CDS Sputcn32_3996 NC_009438.1 4649579 4650823 R KEGG: tcx:Tcr_2096 secretion protein HlyD; secretion protein HlyD complement(4649579..4650823) Shewanella putrefaciens CN-32 5081505 YP_001185499.1 CDS Sputcn32_3997 NC_009438.1 4650832 4652115 R KEGG: tcx:Tcr_2097 outer membrane efflux protein; outer membrane efflux protein complement(4650832..4652115) Shewanella putrefaciens CN-32 5081506 YP_001185500.1 CDS Sputcn32_3998 NC_009438.1 4652129 4653109 R PFAM: peptidase M48, Ste24p; peptidase M56, BlaR1; KEGG: sfr:Sfri_2522 peptidase M56, BlaR1; peptidase M56, BlaR1 complement(4652129..4653109) Shewanella putrefaciens CN-32 5081507 YP_001185501.1 CDS Sputcn32_3999 NC_009438.1 4653118 4653495 R PFAM: transcriptional regulator TrmB; Penicillinase repressor; KEGG: sfr:Sfri_2523 transcriptional repressor, CopY family protein; transcriptional regulator TrmB complement(4653118..4653495) Shewanella putrefaciens CN-32 5081508 YP_001185502.1 CDS Sputcn32_4000 NC_009438.1 4653762 4654931 R PFAM: phage integrase family protein; KEGG: pgi:PG0874 mobilizable transposon, int protein; phage integrase family protein complement(4653762..4654931) Shewanella putrefaciens CN-32 5081509 YP_001185503.1 CDS trmE NC_009438.1 4655095 4656456 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4655095..4656456) Shewanella putrefaciens CN-32 5081510 YP_001185504.1 CDS Sputcn32_4002 NC_009438.1 4656564 4658189 R PFAM: 60 kDa inner membrane insertion protein; KEGG: shm:Shewmr7_4032 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(4656564..4658189) Shewanella putrefaciens CN-32 5081511 YP_001185505.1 CDS Sputcn32_4003 NC_009438.1 4658193 4658447 R PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein complement(4658193..4658447) Shewanella putrefaciens CN-32 5081512 YP_001185506.1 CDS rnpA NC_009438.1 4658414 4658770 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4658414..4658770) Shewanella putrefaciens CN-32 5081513 YP_001185507.1 CDS rpmH NC_009438.1 4658786 4658923 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4658786..4658923) Shewanella putrefaciens CN-32 5081514 Sputcn32_R0004 tRNA Sputcn32_R0004 NC_009438.1 43935 44011 D tRNA-Asp 43935..44011 Shewanella putrefaciens CN-32 5078761 Sputcn32_R0008 tRNA Sputcn32_R0008 NC_009438.1 378226 378302 D tRNA-Asp 378226..378302 Shewanella putrefaciens CN-32 5081227 Sputcn32_R0010 tRNA Sputcn32_R0010 NC_009438.1 538651 538727 D tRNA-Ile 538651..538727 Shewanella putrefaciens CN-32 5078438 Sputcn32_R0011 tRNA Sputcn32_R0011 NC_009438.1 538866 538941 D tRNA-Ala 538866..538941 Shewanella putrefaciens CN-32 5078439 Sputcn32_R0014 tRNA Sputcn32_R0014 NC_009438.1 542495 542570 D tRNA-Thr 542495..542570 Shewanella putrefaciens CN-32 5078442 Sputcn32_R0016 tRNA Sputcn32_R0016 NC_009438.1 863902 863988 R tRNA-Leu complement(863902..863988) Shewanella putrefaciens CN-32 5081985 Sputcn32_R0018 tRNA Sputcn32_R0018 NC_009438.1 1133871 1133957 R tRNA-Leu complement(1133871..1133957) Shewanella putrefaciens CN-32 5081717 Sputcn32_R0019 tRNA Sputcn32_R0019 NC_009438.1 1134026 1134112 R tRNA-Leu complement(1134026..1134112) Shewanella putrefaciens CN-32 5081718 Sputcn32_R0020 tRNA Sputcn32_R0020 NC_009438.1 1134167 1134242 R tRNA-Phe complement(1134167..1134242) Shewanella putrefaciens CN-32 5081719 Sputcn32_R0024 tRNA Sputcn32_R0024 NC_009438.1 1242577 1242653 R tRNA-Met complement(1242577..1242653) Shewanella putrefaciens CN-32 5081712 Sputcn32_R0026 tRNA Sputcn32_R0026 NC_009438.1 1698077 1698153 D tRNA-Pro 1698077..1698153 Shewanella putrefaciens CN-32 5079641 Sputcn32_R0027 tRNA Sputcn32_R0027 NC_009438.1 1698263 1698339 D tRNA-Arg 1698263..1698339 Shewanella putrefaciens CN-32 5079642 Sputcn32_R0028 tRNA Sputcn32_R0028 NC_009438.1 1698349 1698424 D tRNA-His 1698349..1698424 Shewanella putrefaciens CN-32 5079643 Sputcn32_R0030 tRNA Sputcn32_R0030 NC_009438.1 1832865 1832940 D tRNA-Lys 1832865..1832940 Shewanella putrefaciens CN-32 5079426 Sputcn32_R0031 tRNA Sputcn32_R0031 NC_009438.1 1833000 1833075 D tRNA-Lys 1833000..1833075 Shewanella putrefaciens CN-32 5079427 Sputcn32_R0032 tRNA Sputcn32_R0032 NC_009438.1 1833114 1833189 D tRNA-Lys 1833114..1833189 Shewanella putrefaciens CN-32 5079428 Sputcn32_R0033 tRNA Sputcn32_R0033 NC_009438.1 1833248 1833323 D tRNA-Lys 1833248..1833323 Shewanella putrefaciens CN-32 5079429 Sputcn32_R0034 tRNA Sputcn32_R0034 NC_009438.1 1833380 1833455 D tRNA-Lys 1833380..1833455 Shewanella putrefaciens CN-32 5079430 Sputcn32_R0035 tRNA Sputcn32_R0035 NC_009438.1 1833514 1833589 D tRNA-Lys 1833514..1833589 Shewanella putrefaciens CN-32 5079431 Sputcn32_R0036 tRNA Sputcn32_R0036 NC_009438.1 1858117 1858193 R tRNA-Met complement(1858117..1858193) Shewanella putrefaciens CN-32 5079454 Sputcn32_R0037 tRNA Sputcn32_R0037 NC_009438.1 1858334 1858410 R tRNA-Met complement(1858334..1858410) Shewanella putrefaciens CN-32 5079455 Sputcn32_R0038 tRNA Sputcn32_R0038 NC_009438.1 1858551 1858627 R tRNA-Met complement(1858551..1858627) Shewanella putrefaciens CN-32 5079372 Sputcn32_R0039 tRNA Sputcn32_R0039 NC_009438.1 1858669 1858745 R tRNA-Met complement(1858669..1858745) Shewanella putrefaciens CN-32 5079373 Sputcn32_R0040 tRNA Sputcn32_R0040 NC_009438.1 1868188 1868278 D tRNA-Ser 1868188..1868278 Shewanella putrefaciens CN-32 5079381 Sputcn32_R0041 tRNA Sputcn32_R0041 NC_009438.1 1868623 1868713 D tRNA-Ser 1868623..1868713 Shewanella putrefaciens CN-32 5079382 Sputcn32_R0042 tRNA Sputcn32_R0042 NC_009438.1 1872487 1872562 D tRNA-Gly 1872487..1872562 Shewanella putrefaciens CN-32 5079386 Sputcn32_R0043 tRNA Sputcn32_R0043 NC_009438.1 1872616 1872689 D tRNA-Cys 1872616..1872689 Shewanella putrefaciens CN-32 5079387 Sputcn32_R0044 tRNA Sputcn32_R0044 NC_009438.1 1872740 1872826 D tRNA-Leu 1872740..1872826 Shewanella putrefaciens CN-32 5079388 Sputcn32_R0045 tRNA Sputcn32_R0045 NC_009438.1 1872957 1873043 D tRNA-Leu 1872957..1873043 Shewanella putrefaciens CN-32 5079389 Sputcn32_R0046 tRNA Sputcn32_R0046 NC_009438.1 2028303 2028379 D tRNA-Asp 2028303..2028379 Shewanella putrefaciens CN-32 5079241 Sputcn32_R0047 tRNA Sputcn32_R0047 NC_009438.1 2028530 2028606 D tRNA-Asp 2028530..2028606 Shewanella putrefaciens CN-32 5079242 Sputcn32_R0048 tRNA Sputcn32_R0048 NC_009438.1 2064592 2064679 D tRNA-Ser 2064592..2064679 Shewanella putrefaciens CN-32 5079180 Sputcn32_R0049 tRNA Sputcn32_R0049 NC_009438.1 2117079 2117154 R tRNA-Asn complement(2117079..2117154) Shewanella putrefaciens CN-32 5079219 Sputcn32_R0050 tRNA Sputcn32_R0050 NC_009438.1 2117201 2117276 R tRNA-Asn complement(2117201..2117276) Shewanella putrefaciens CN-32 5079220 Sputcn32_R0051 tRNA Sputcn32_R0051 NC_009438.1 2117320 2117395 R tRNA-Asn complement(2117320..2117395) Shewanella putrefaciens CN-32 5079221 Sputcn32_R0052 tRNA Sputcn32_R0052 NC_009438.1 2117439 2117514 R tRNA-Asn complement(2117439..2117514) Shewanella putrefaciens CN-32 5079222 Sputcn32_R0053 tRNA Sputcn32_R0053 NC_009438.1 2117576 2117651 R tRNA-Asn complement(2117576..2117651) Shewanella putrefaciens CN-32 5080159 Sputcn32_R0054 tRNA Sputcn32_R0054 NC_009438.1 2122983 2123067 R tRNA-Tyr complement(2122983..2123067) Shewanella putrefaciens CN-32 5080164 Sputcn32_R0055 tRNA Sputcn32_R0055 NC_009438.1 2123170 2123254 R tRNA-Tyr complement(2123170..2123254) Shewanella putrefaciens CN-32 5080165 Sputcn32_R0056 tRNA Sputcn32_R0056 NC_009438.1 2123310 2123394 R tRNA-Tyr complement(2123310..2123394) Shewanella putrefaciens CN-32 5080166 Sputcn32_R0057 tRNA Sputcn32_R0057 NC_009438.1 2164552 2164627 D tRNA-Gly 2164552..2164627 Shewanella putrefaciens CN-32 5078509 Sputcn32_R0058 tRNA Sputcn32_R0058 NC_009438.1 2164681 2164754 D tRNA-Cys 2164681..2164754 Shewanella putrefaciens CN-32 5078510 Sputcn32_R0059 tRNA Sputcn32_R0059 NC_009438.1 2164805 2164891 D tRNA-Leu 2164805..2164891 Shewanella putrefaciens CN-32 5078511 Sputcn32_R0060 tRNA Sputcn32_R0060 NC_009438.1 2284957 2285047 R tRNA-Ser complement(2284957..2285047) Shewanella putrefaciens CN-32 5078201 Sputcn32_R0061 tRNA Sputcn32_R0061 NC_009438.1 2306135 2306211 D tRNA-Val 2306135..2306211 Shewanella putrefaciens CN-32 5078226 Sputcn32_R0062 tRNA Sputcn32_R0062 NC_009438.1 2306261 2306337 D tRNA-Val 2306261..2306337 Shewanella putrefaciens CN-32 5078227 Sputcn32_R0063 tRNA Sputcn32_R0063 NC_009438.1 2642147 2642223 R tRNA-Pro complement(2642147..2642223) Shewanella putrefaciens CN-32 5080265 Sputcn32_R0066 tRNA Sputcn32_R0066 NC_009438.1 2715020 2715095 R tRNA-Ala complement(2715020..2715095) Shewanella putrefaciens CN-32 5080378 Sputcn32_R0067 tRNA Sputcn32_R0067 NC_009438.1 2715233 2715309 R tRNA-Ile complement(2715233..2715309) Shewanella putrefaciens CN-32 5080379 Sputcn32_R0069 tRNA Sputcn32_R0069 NC_009438.1 2899667 2899742 R tRNA-Glu complement(2899667..2899742) Shewanella putrefaciens CN-32 5080916 Sputcn32_R0070 tRNA Sputcn32_R0070 NC_009438.1 2899843 2899918 R tRNA-Glu complement(2899843..2899918) Shewanella putrefaciens CN-32 5080917 Sputcn32_R0071 tRNA Sputcn32_R0071 NC_009438.1 2900154 2900229 R tRNA-Glu complement(2900154..2900229) Shewanella putrefaciens CN-32 5080918 Sputcn32_R0072 tRNA Sputcn32_R0072 NC_009438.1 2900361 2900436 R tRNA-Glu complement(2900361..2900436) Shewanella putrefaciens CN-32 5080919 Sputcn32_R0073 tRNA Sputcn32_R0073 NC_009438.1 2900568 2900643 R tRNA-Glu complement(2900568..2900643) Shewanella putrefaciens CN-32 5080920 Sputcn32_R0074 tRNA Sputcn32_R0074 NC_009438.1 2900776 2900851 R tRNA-Glu complement(2900776..2900851) Shewanella putrefaciens CN-32 5080921 Sputcn32_R0075 tRNA Sputcn32_R0075 NC_009438.1 2901018 2901093 R tRNA-Ala complement(2901018..2901093) Shewanella putrefaciens CN-32 5080922 Sputcn32_R0076 tRNA Sputcn32_R0076 NC_009438.1 2901208 2901283 R tRNA-Glu complement(2901208..2901283) Shewanella putrefaciens CN-32 5080923 Sputcn32_R0077 tRNA Sputcn32_R0077 NC_009438.1 2901359 2901434 R tRNA-Ala complement(2901359..2901434) Shewanella putrefaciens CN-32 5080924 Sputcn32_R0078 tRNA Sputcn32_R0078 NC_009438.1 2903363 2903438 D tRNA-Val 2903363..2903438 Shewanella putrefaciens CN-32 5080926 Sputcn32_R0079 tRNA Sputcn32_R0079 NC_009438.1 2903483 2903558 D tRNA-Val 2903483..2903558 Shewanella putrefaciens CN-32 5080927 Sputcn32_R0080 tRNA Sputcn32_R0080 NC_009438.1 2903596 2903671 D tRNA-Val 2903596..2903671 Shewanella putrefaciens CN-32 5080928 Sputcn32_R0081 tRNA Sputcn32_R0081 NC_009438.1 2903716 2903791 D tRNA-Val 2903716..2903791 Shewanella putrefaciens CN-32 5080929 Sputcn32_R0082 tRNA Sputcn32_R0082 NC_009438.1 2903820 2903895 D tRNA-Val 2903820..2903895 Shewanella putrefaciens CN-32 5080842 Sputcn32_R0083 tRNA Sputcn32_R0083 NC_009438.1 2903924 2903999 D tRNA-Val 2903924..2903999 Shewanella putrefaciens CN-32 5080843 Sputcn32_R0084 tRNA Sputcn32_R0084 NC_009438.1 3025150 3025225 D tRNA-Arg 3025150..3025225 Shewanella putrefaciens CN-32 5080658 Sputcn32_R0085 tRNA Sputcn32_R0085 NC_009438.1 3130097 3130172 D tRNA-Phe 3130097..3130172 Shewanella putrefaciens CN-32 5079915 Sputcn32_R0086 tRNA Sputcn32_R0086 NC_009438.1 3130217 3130292 D tRNA-Thr 3130217..3130292 Shewanella putrefaciens CN-32 5079916 Sputcn32_R0087 tRNA Sputcn32_R0087 NC_009438.1 3130779 3130854 D tRNA-Phe 3130779..3130854 Shewanella putrefaciens CN-32 5079917 Sputcn32_R0088 tRNA Sputcn32_R0088 NC_009438.1 3130899 3130974 D tRNA-Thr 3130899..3130974 Shewanella putrefaciens CN-32 5079918 Sputcn32_R0089 tRNA Sputcn32_R0089 NC_009438.1 3175886 3175962 R tRNA-Arg complement(3175886..3175962) Shewanella putrefaciens CN-32 5080802 Sputcn32_R0090 tRNA Sputcn32_R0090 NC_009438.1 3176060 3176151 R tRNA-Ser complement(3176060..3176151) Shewanella putrefaciens CN-32 5080803 Sputcn32_R0091 tRNA Sputcn32_R0091 NC_009438.1 3176187 3176263 R tRNA-Arg complement(3176187..3176263) Shewanella putrefaciens CN-32 5080804 Sputcn32_R0092 tRNA Sputcn32_R0092 NC_009438.1 3176308 3176384 R tRNA-Arg complement(3176308..3176384) Shewanella putrefaciens CN-32 5080805 Sputcn32_R0093 tRNA Sputcn32_R0093 NC_009438.1 3176427 3176503 R tRNA-Arg complement(3176427..3176503) Shewanella putrefaciens CN-32 5080806 Sputcn32_R0094 tRNA Sputcn32_R0094 NC_009438.1 3176591 3176667 R tRNA-Arg complement(3176591..3176667) Shewanella putrefaciens CN-32 5080807 Sputcn32_R0095 tRNA Sputcn32_R0095 NC_009438.1 3176692 3176768 R tRNA-Arg complement(3176692..3176768) Shewanella putrefaciens CN-32 5080808 Sputcn32_R0096 tRNA Sputcn32_R0096 NC_009438.1 3176791 3176882 R tRNA-Ser complement(3176791..3176882) Shewanella putrefaciens CN-32 5080809 Sputcn32_R0097 tRNA Sputcn32_R0097 NC_009438.1 3297328 3297404 R tRNA-Met complement(3297328..3297404) Shewanella putrefaciens CN-32 5078669 Sputcn32_R0098 tRNA Sputcn32_R0098 NC_009438.1 3297487 3297573 R tRNA-Leu complement(3297487..3297573) Shewanella putrefaciens CN-32 5078670 Sputcn32_R0099 tRNA Sputcn32_R0099 NC_009438.1 3312375 3312449 R tRNA-Gln complement(3312375..3312449) Shewanella putrefaciens CN-32 5078686 Sputcn32_R0100 tRNA Sputcn32_R0100 NC_009438.1 3312492 3312576 R tRNA-Leu complement(3312492..3312576) Shewanella putrefaciens CN-32 5078687 Sputcn32_R0101 tRNA Sputcn32_R0101 NC_009438.1 3312659 3312735 R tRNA-Met complement(3312659..3312735) Shewanella putrefaciens CN-32 5078688 Sputcn32_R0102 tRNA Sputcn32_R0102 NC_009438.1 3312738 3312812 R tRNA-Gln complement(3312738..3312812) Shewanella putrefaciens CN-32 5078689 Sputcn32_R0103 tRNA Sputcn32_R0103 NC_009438.1 3312835 3312909 R tRNA-Gln complement(3312835..3312909) Shewanella putrefaciens CN-32 5078690 Sputcn32_R0104 tRNA Sputcn32_R0104 NC_009438.1 3312958 3313042 R tRNA-Leu complement(3312958..3313042) Shewanella putrefaciens CN-32 5078691 Sputcn32_R0105 tRNA Sputcn32_R0105 NC_009438.1 3313113 3313189 R tRNA-Met complement(3313113..3313189) Shewanella putrefaciens CN-32 5078692 Sputcn32_R0106 tRNA Sputcn32_R0106 NC_009438.1 3394306 3394382 R tRNA-Trp complement(3394306..3394382) Shewanella putrefaciens CN-32 5078153 Sputcn32_R0107 tRNA Sputcn32_R0107 NC_009438.1 3827923 3827998 R tRNA-Gly complement(3827923..3827998) Shewanella putrefaciens CN-32 5078356 Sputcn32_R0108 tRNA Sputcn32_R0108 NC_009438.1 3828005 3828080 R tRNA-Gly complement(3828005..3828080) Shewanella putrefaciens CN-32 5078357 Sputcn32_R0109 tRNA Sputcn32_R0109 NC_009438.1 3828123 3828198 R tRNA-Gly complement(3828123..3828198) Shewanella putrefaciens CN-32 5078358 Sputcn32_R0110 tRNA Sputcn32_R0110 NC_009438.1 3828320 3828395 R tRNA-Gly complement(3828320..3828395) Shewanella putrefaciens CN-32 5078359 Sputcn32_R0113 tRNA Sputcn32_R0113 NC_009438.1 4078336 4078411 R tRNA-Ala complement(4078336..4078411) Shewanella putrefaciens CN-32 5080545 Sputcn32_R0114 tRNA Sputcn32_R0114 NC_009438.1 4078550 4078626 R tRNA-Ile complement(4078550..4078626) Shewanella putrefaciens CN-32 5080546 Sputcn32_R0116 tRNA Sputcn32_R0116 NC_009438.1 4190881 4190957 R tRNA-Pro complement(4190881..4190957) Shewanella putrefaciens CN-32 5078834 Sputcn32_R0117 tRNA Sputcn32_R0117 NC_009438.1 4191110 4191186 R tRNA-Pro complement(4191110..4191186) Shewanella putrefaciens CN-32 5078835 Sputcn32_R0118 tRNA Sputcn32_R0118 NC_009438.1 4191306 4191381 R tRNA-His complement(4191306..4191381) Shewanella putrefaciens CN-32 5078836 Sputcn32_R0119 tRNA Sputcn32_R0119 NC_009438.1 4191434 4191510 R tRNA-Arg complement(4191434..4191510) Shewanella putrefaciens CN-32 5078837 Sputcn32_R0124 tRNA Sputcn32_R0124 NC_009438.1 4380303 4380378 R tRNA-Thr complement(4380303..4380378) Shewanella putrefaciens CN-32 5081054 Sputcn32_R0125 tRNA Sputcn32_R0125 NC_009438.1 4380388 4380461 R tRNA-Gly complement(4380388..4380461) Shewanella putrefaciens CN-32 5081055 Sputcn32_R0126 tRNA Sputcn32_R0126 NC_009438.1 4380498 4380582 R tRNA-Tyr complement(4380498..4380582) Shewanella putrefaciens CN-32 5081056 Sputcn32_R0127 tRNA Sputcn32_R0127 NC_009438.1 4380590 4380665 R tRNA-Thr complement(4380590..4380665) Shewanella putrefaciens CN-32 5081057 Sputcn32_R0001 rRNA Sputcn32_R0001 NC_009438.1 38741 40295 D 16S ribosomal RNA 38741..40295 Shewanella putrefaciens CN-32 5078758 Sputcn32_R0002 rRNA Sputcn32_R0002 NC_009438.1 40660 43552 D 23S ribosomal RNA 40660..43552 Shewanella putrefaciens CN-32 5078759 Sputcn32_R0003 rRNA Sputcn32_R0003 NC_009438.1 43780 43900 D 5S ribosomal RNA 43780..43900 Shewanella putrefaciens CN-32 5078760 Sputcn32_R0005 rRNA Sputcn32_R0005 NC_009438.1 373081 374635 D 16S ribosomal RNA 373081..374635 Shewanella putrefaciens CN-32 5081224 Sputcn32_R0006 rRNA Sputcn32_R0006 NC_009438.1 374951 377843 D 23S ribosomal RNA 374951..377843 Shewanella putrefaciens CN-32 5081225 Sputcn32_R0007 rRNA Sputcn32_R0007 NC_009438.1 378071 378191 D 5S ribosomal RNA 378071..378191 Shewanella putrefaciens CN-32 5081226 Sputcn32_R0009 rRNA Sputcn32_R0009 NC_009438.1 536866 538420 D 16S ribosomal RNA 536866..538420 Shewanella putrefaciens CN-32 5078437 Sputcn32_R0012 rRNA Sputcn32_R0012 NC_009438.1 539233 542125 D 23S ribosomal RNA 539233..542125 Shewanella putrefaciens CN-32 5078440 Sputcn32_R0013 rRNA Sputcn32_R0013 NC_009438.1 542303 542423 D 5S ribosomal RNA 542303..542423 Shewanella putrefaciens CN-32 5078441 Sputcn32_R0015 rRNA Sputcn32_R0015 NC_009438.1 542606 542725 D 5S ribosomal RNA 542606..542725 Shewanella putrefaciens CN-32 5078443 Sputcn32_R0021 rRNA Sputcn32_R0021 NC_009438.1 1142071 1143625 D 16S ribosomal RNA 1142071..1143625 Shewanella putrefaciens CN-32 5081726 Sputcn32_R0022 rRNA Sputcn32_R0022 NC_009438.1 1143941 1146833 D 23S ribosomal RNA 1143941..1146833 Shewanella putrefaciens CN-32 5081727 Sputcn32_R0023 rRNA Sputcn32_R0023 NC_009438.1 1147017 1147136 D 5S ribosomal RNA 1147017..1147136 Shewanella putrefaciens CN-32 5081728 Sputcn32_R0064 rRNA Sputcn32_R0064 NC_009438.1 2711347 2711467 R 5S ribosomal RNA complement(2711347..2711467) Shewanella putrefaciens CN-32 5080376 Sputcn32_R0065 rRNA Sputcn32_R0065 NC_009438.1 2711688 2714580 R 23S ribosomal RNA complement(2711688..2714580) Shewanella putrefaciens CN-32 5080377 Sputcn32_R0068 rRNA Sputcn32_R0068 NC_009438.1 2715541 2717095 R 16S ribosomal RNA complement(2715541..2717095) Shewanella putrefaciens CN-32 5080380 Sputcn32_R0111 rRNA Sputcn32_R0111 NC_009438.1 4074802 4074922 R 5S ribosomal RNA complement(4074802..4074922) Shewanella putrefaciens CN-32 5080543 Sputcn32_R0112 rRNA Sputcn32_R0112 NC_009438.1 4075153 4078045 R 23S ribosomal RNA complement(4075153..4078045) Shewanella putrefaciens CN-32 5080544 Sputcn32_R0115 rRNA Sputcn32_R0115 NC_009438.1 4078858 4080412 R 16S ribosomal RNA complement(4078858..4080412) Shewanella putrefaciens CN-32 5080547 Sputcn32_R0121 rRNA Sputcn32_R0121 NC_009438.1 4333162 4333281 R 5S ribosomal RNA complement(4333162..4333281) Shewanella putrefaciens CN-32 5079105 Sputcn32_R0122 rRNA Sputcn32_R0122 NC_009438.1 4333462 4336354 R 23S ribosomal RNA complement(4333462..4336354) Shewanella putrefaciens CN-32 5079106 Sputcn32_R0123 rRNA Sputcn32_R0123 NC_009438.1 4336818 4338372 R 16S ribosomal RNA complement(4336818..4338372) Shewanella putrefaciens CN-32 5079107 Sputcn32_R0128 rRNA Sputcn32_R0128 NC_009438.1 4547401 4547521 R 5S ribosomal RNA complement(4547401..4547521) Shewanella putrefaciens CN-32 5081348 Sputcn32_R0129 rRNA Sputcn32_R0129 NC_009438.1 4547749 4550641 R 23S ribosomal RNA complement(4547749..4550641) Shewanella putrefaciens CN-32 5081349 Sputcn32_R0130 rRNA Sputcn32_R0130 NC_009438.1 4550957 4552511 R 16S ribosomal RNA complement(4550957..4552511) Shewanella putrefaciens CN-32 5081350