-- dump date 20140620_064530 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 425104000001 SEQ_END SEQ_END NC_009831.1 5517674 5517674 DR NC_009831.1; contig end 5517674..5517674 Shewanella sediminis HAW-EB3 YP_001471742.1 CDS trmE NC_009831.1 521 1882 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(521..1882) Shewanella sediminis HAW-EB3 5612828 YP_001471743.1 CDS Ssed_0002 NC_009831.1 1997 3631 R KEGG: slo:Shew_3866 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(1997..3631) Shewanella sediminis HAW-EB3 5610173 YP_001471744.1 CDS Ssed_0003 NC_009831.1 3635 3892 R KEGG: slo:Shew_3867 protein of unknown function DUF37; hypothetical protein complement(3635..3892) Shewanella sediminis HAW-EB3 5613984 YP_001471745.1 CDS rnpA NC_009831.1 3859 4221 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3859..4221) Shewanella sediminis HAW-EB3 5613985 YP_001471746.1 CDS rpmH NC_009831.1 4230 4367 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4230..4367) Shewanella sediminis HAW-EB3 5610243 YP_001471747.1 CDS dnaA NC_009831.1 4812 6200 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4812..6200 Shewanella sediminis HAW-EB3 5610244 YP_001471748.1 CDS Ssed_0007 NC_009831.1 6220 7320 D KEGG: slo:Shew_0002 DNA polymerase III, beta subunit; DNA-directed DNA polymerase 6220..7320 Shewanella sediminis HAW-EB3 5610245 YP_001471749.1 CDS recF NC_009831.1 7614 8696 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 7614..8696 Shewanella sediminis HAW-EB3 5610246 YP_001471750.1 CDS Ssed_0009 NC_009831.1 8689 11130 D KEGG: slo:Shew_0004 DNA gyrase, B subunit; DNA topoisomerase 8689..11130 Shewanella sediminis HAW-EB3 5609752 YP_001471751.1 CDS Ssed_0010 NC_009831.1 11580 12326 R KEGG: slo:Shew_0006 LamB/YcsF family protein; LamB/YcsF family protein complement(11580..12326) Shewanella sediminis HAW-EB3 5609753 YP_001471752.1 CDS Ssed_0011 NC_009831.1 12470 13456 R KEGG: slo:Shew_0007 UreA amidolyase related protein; urea amidolyase complement(12470..13456) Shewanella sediminis HAW-EB3 5609754 YP_001471753.1 CDS Ssed_0012 NC_009831.1 13485 14171 R KEGG: bte:BTH_I0230 conserved hypothetical protein TIGR00370; hypothetical protein complement(13485..14171) Shewanella sediminis HAW-EB3 5609755 YP_001471754.1 CDS Ssed_0013 NC_009831.1 14650 15705 D KEGG: sbl:Sbal_0011 signal transduction protein; signal transduction protein 14650..15705 Shewanella sediminis HAW-EB3 5609756 YP_001471755.1 CDS glyS NC_009831.1 15774 17843 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(15774..17843) Shewanella sediminis HAW-EB3 5609687 YP_001471756.1 CDS glyQ NC_009831.1 17855 18718 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(17855..18718) Shewanella sediminis HAW-EB3 5609688 YP_001471757.1 CDS Ssed_0016 NC_009831.1 18917 19507 D KEGG: slo:Shew_0011 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I 18917..19507 Shewanella sediminis HAW-EB3 5609689 YP_001471758.1 CDS Ssed_0017 NC_009831.1 19576 20742 D KEGG: ppr:PBPRA3400 transport permease; chloramphenicol O-acetyltransferase 19576..20742 Shewanella sediminis HAW-EB3 5609690 YP_001471759.1 CDS Ssed_0018 NC_009831.1 20933 24178 R KEGG: slo:Shew_0013 amidohydrolase; amidohydrolase complement(20933..24178) Shewanella sediminis HAW-EB3 5609691 YP_001471760.1 CDS Ssed_0019 NC_009831.1 24405 24845 R KEGG: she:Shewmr4_0012 hypothetical protein; hypothetical protein complement(24405..24845) Shewanella sediminis HAW-EB3 5612851 YP_001471761.1 CDS Ssed_0020 NC_009831.1 24870 25115 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(24870..25115) Shewanella sediminis HAW-EB3 5612852 YP_001471762.1 CDS Ssed_0021 NC_009831.1 25322 25789 R KEGG: slo:Shew_0016 YbaK/EbsC protein; YbaK/EbsC protein complement(25322..25789) Shewanella sediminis HAW-EB3 5612853 YP_001471763.1 CDS fadA NC_009831.1 26073 27236 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(26073..27236) Shewanella sediminis HAW-EB3 5612854 YP_001471764.1 CDS fadB NC_009831.1 27258 29408 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(27258..29408) Shewanella sediminis HAW-EB3 5612855 YP_001471765.1 CDS Ssed_0024 NC_009831.1 29795 31114 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 29795..31114 Shewanella sediminis HAW-EB3 5612758 YP_001471766.1 CDS Ssed_0025 NC_009831.1 31167 31781 D KEGG: slo:Shew_0021 protein of unknown function UPF0029; hypothetical protein 31167..31781 Shewanella sediminis HAW-EB3 5612759 YP_001471767.1 CDS Ssed_0026 NC_009831.1 31956 33413 D KEGG: slo:Shew_0022 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 31956..33413 Shewanella sediminis HAW-EB3 5612760 YP_001471768.1 CDS Ssed_0027 NC_009831.1 33511 34038 D KEGG: slo:Shew_0023 protoporphyrinogen oxidase; protoporphyrinogen oxidase 33511..34038 Shewanella sediminis HAW-EB3 5612761 YP_001471769.1 CDS Ssed_0028 NC_009831.1 34180 34488 R KEGG: shw:Sputw3181_0018 regulatory protein, ArsR; regulatory protein ArsR complement(34180..34488) Shewanella sediminis HAW-EB3 5610100 YP_001471770.1 CDS Ssed_0029 NC_009831.1 34690 35229 D KEGG: slo:Shew_0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 34690..35229 Shewanella sediminis HAW-EB3 5610101 YP_001471771.1 CDS Ssed_0030 NC_009831.1 35726 36166 D hypothetical protein 35726..36166 Shewanella sediminis HAW-EB3 5610102 YP_001471772.1 CDS Ssed_0031 NC_009831.1 36602 38044 R KEGG: slo:Shew_3740 potassium uptake protein, TrkH family; TrkH family potassium uptake protein complement(36602..38044) Shewanella sediminis HAW-EB3 5610103 YP_001471773.1 CDS trkA NC_009831.1 38087 39496 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(38087..39496) Shewanella sediminis HAW-EB3 5610104 YP_001471774.1 CDS Ssed_0033 NC_009831.1 39506 40786 R KEGG: slo:Shew_3738 sun protein; sun protein complement(39506..40786) Shewanella sediminis HAW-EB3 5613591 YP_001471775.1 CDS Ssed_0034 NC_009831.1 40788 41777 R KEGG: she:Shewmr4_0028 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(40788..41777) Shewanella sediminis HAW-EB3 5613592 YP_001471776.1 CDS def NC_009831.1 41785 42297 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(41785..42297) Shewanella sediminis HAW-EB3 5613593 YP_001471777.1 CDS Ssed_0036 NC_009831.1 42423 43526 D KEGG: slo:Shew_3735 peptidoglycan-binding LysM; peptidoglycan-binding LysM 42423..43526 Shewanella sediminis HAW-EB3 5613594 YP_001471778.1 CDS Ssed_0037 NC_009831.1 43565 44671 D KEGG: slo:Shew_3734 DNA protecting protein DprA; DNA protecting protein DprA 43565..44671 Shewanella sediminis HAW-EB3 5613595 YP_001471779.1 CDS Ssed_0038 NC_009831.1 44674 45147 D KEGG: slo:Shew_3733 protein of unknown function DUF494; hypothetical protein 44674..45147 Shewanella sediminis HAW-EB3 5613694 YP_001471780.1 CDS Ssed_0039 NC_009831.1 45367 47139 R KEGG: slo:Shew_3732 microbial collagenase; collagenase complement(45367..47139) Shewanella sediminis HAW-EB3 5613695 YP_001471781.1 CDS Ssed_0040 NC_009831.1 47275 47838 D KEGG: slo:Shew_3731 DNA topoisomerase, type IA, Zn finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 47275..47838 Shewanella sediminis HAW-EB3 5613696 YP_001471782.1 CDS Ssed_0041 NC_009831.1 47939 48496 D KEGG: slo:Shew_3730 SUA5/YciO/YrdC/YwlC family protein; SUA5/YciO/YrdC/YwlC family protein 47939..48496 Shewanella sediminis HAW-EB3 5613697 YP_001471783.1 CDS Ssed_0042 NC_009831.1 48531 49451 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 48531..49451 Shewanella sediminis HAW-EB3 5612496 YP_001471784.1 CDS Ssed_0043 NC_009831.1 49687 50502 D KEGG: slo:Shew_3727 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 49687..50502 Shewanella sediminis HAW-EB3 5612497 YP_001471785.1 CDS Ssed_0044 NC_009831.1 50517 50795 D KEGG: vpa:VP3032 hypothetical protein; hypothetical protein 50517..50795 Shewanella sediminis HAW-EB3 5612498 YP_001471786.1 CDS Ssed_0045 NC_009831.1 50829 51383 R KEGG: slo:Shew_3725 carbonic anhydrase, family 3; carbonic anhydrase complement(50829..51383) Shewanella sediminis HAW-EB3 5612499 YP_001471787.1 CDS Ssed_0046 NC_009831.1 58078 60588 D KEGG: slo:Shew_3724 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 58078..60588 Shewanella sediminis HAW-EB3 5612066 YP_001471788.1 CDS Ssed_0047 NC_009831.1 60833 61006 R KEGG: sdn:Sden_3629 hypothetical protein; hypothetical protein complement(60833..61006) Shewanella sediminis HAW-EB3 5612890 YP_001471789.1 CDS Ssed_0048 NC_009831.1 61185 61601 R KEGG: shw:Sputw3181_0493 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(61185..61601) Shewanella sediminis HAW-EB3 5612891 YP_001471790.1 CDS Ssed_0049 NC_009831.1 61598 62608 R KEGG: sdn:Sden_3631 OmpA/MotB; OmpA/MotB protein complement(61598..62608) Shewanella sediminis HAW-EB3 5612892 YP_001471791.1 CDS Ssed_0050 NC_009831.1 62608 63465 R KEGG: sdn:Sden_3632 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(62608..63465) Shewanella sediminis HAW-EB3 5612893 YP_001471792.1 CDS fliA NC_009831.1 63481 64203 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(63481..64203) Shewanella sediminis HAW-EB3 5612894 YP_001471793.1 CDS Ssed_0052 NC_009831.1 64214 64672 R KEGG: sdn:Sden_3634 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(64214..64672) Shewanella sediminis HAW-EB3 5610311 YP_001471794.1 CDS Ssed_0053 NC_009831.1 64688 65839 R KEGG: sbl:Sbal_3952 flagellar hook-length control protein; hypothetical protein complement(64688..65839) Shewanella sediminis HAW-EB3 5610312 YP_001471795.1 CDS Ssed_0054 NC_009831.1 65829 66155 R KEGG: shw:Sputw3181_0487 hypothetical protein; hypothetical protein complement(65829..66155) Shewanella sediminis HAW-EB3 5610313 YP_001471796.1 CDS Ssed_0055 NC_009831.1 66124 66504 R KEGG: shw:Sputw3181_0486 flagellar protein FliS; flagellar protein FliS complement(66124..66504) Shewanella sediminis HAW-EB3 5610314 YP_001471797.1 CDS Ssed_0056 NC_009831.1 66518 67894 R KEGG: shw:Sputw3181_0485 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein complement(66518..67894) Shewanella sediminis HAW-EB3 5610966 YP_001471798.1 CDS Ssed_0057 NC_009831.1 68291 69085 R KEGG: shw:Sputw3181_0483 flagellin domain protein; flagellin domain-containing protein complement(68291..69085) Shewanella sediminis HAW-EB3 5610967 YP_001471799.1 CDS Ssed_0058 NC_009831.1 69675 70700 R KEGG: spc:Sputcn32_3457 hypothetical protein; hypothetical protein complement(69675..70700) Shewanella sediminis HAW-EB3 5610968 YP_001471800.1 CDS Ssed_0059 NC_009831.1 70710 71627 R KEGG: spc:Sputcn32_3458 flagellar hook-associated protein 3; flagellar hook-associated protein 3 complement(70710..71627) Shewanella sediminis HAW-EB3 5610969 YP_001471801.1 CDS Ssed_0060 NC_009831.1 71640 73013 R KEGG: spc:Sputcn32_3459 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(71640..73013) Shewanella sediminis HAW-EB3 5610970 YP_001471802.1 CDS flgJ NC_009831.1 73080 73517 R FlgJ; flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; like the lateral flagella FlgJ in Vibrio parahaemolyticus this protein does not contains a C-terminal muramidase domain; peptidoglycan hydrolase complement(73080..73517) Shewanella sediminis HAW-EB3 5610791 YP_001471803.1 CDS flgI NC_009831.1 73517 74644 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(73517..74644) Shewanella sediminis HAW-EB3 5610792 YP_001471804.1 CDS flgH NC_009831.1 74739 75401 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(74739..75401) Shewanella sediminis HAW-EB3 5610793 YP_001471805.1 CDS Ssed_0064 NC_009831.1 75446 76231 R KEGG: spc:Sputcn32_3463 flagellar basal-body rod protein FlgG; flagellar basal-body rod protein FlgG complement(75446..76231) Shewanella sediminis HAW-EB3 5610794 YP_001471806.1 CDS Ssed_0065 NC_009831.1 76302 77036 R KEGG: shw:Sputw3181_0475 flagellar basal-body rod protein FlgF; flagellar basal-body rod protein FlgF complement(76302..77036) Shewanella sediminis HAW-EB3 5610795 YP_001471807.1 CDS flgE NC_009831.1 77047 78243 R the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar hook protein FlgE complement(77047..78243) Shewanella sediminis HAW-EB3 5610626 YP_001471808.1 CDS Ssed_0067 NC_009831.1 78272 78937 R KEGG: shw:Sputw3181_0473 flagellar hook capping protein; flagellar hook capping protein complement(78272..78937) Shewanella sediminis HAW-EB3 5610627 YP_001471809.1 CDS Ssed_0068 NC_009831.1 79003 79422 R KEGG: shw:Sputw3181_0472 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(79003..79422) Shewanella sediminis HAW-EB3 5610628 YP_001471810.1 CDS flgB NC_009831.1 79521 79871 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgB complement(79521..79871) Shewanella sediminis HAW-EB3 5610629 YP_001471811.1 CDS Ssed_0070 NC_009831.1 79958 80704 D KEGG: shw:Sputw3181_0470 SAF domain; SAF domain-containing protein 79958..80704 Shewanella sediminis HAW-EB3 5613952 YP_001471812.1 CDS Ssed_0071 NC_009831.1 80780 81064 D KEGG: shw:Sputw3181_0469 hypothetical protein; hypothetical protein 80780..81064 Shewanella sediminis HAW-EB3 5613953 YP_001471813.1 CDS Ssed_0072 NC_009831.1 81067 81504 D KEGG: shw:Sputw3181_0468 hypothetical protein; hypothetical protein 81067..81504 Shewanella sediminis HAW-EB3 5613954 YP_001471814.1 CDS Ssed_0073 NC_009831.1 81517 81951 R KEGG: sdn:Sden_3655 hypothetical protein; hypothetical protein complement(81517..81951) Shewanella sediminis HAW-EB3 5613955 YP_001471815.1 CDS Ssed_0074 NC_009831.1 81966 83309 R KEGG: sbl:Sbal_3976 ATPase, FliI/YscN family; FliI/YscN family ATPase complement(81966..83309) Shewanella sediminis HAW-EB3 5613956 YP_001471816.1 CDS fliH NC_009831.1 83299 84057 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(83299..84057) Shewanella sediminis HAW-EB3 5613480 YP_001471817.1 CDS fliG NC_009831.1 84057 85070 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(84057..85070) Shewanella sediminis HAW-EB3 5613481 YP_001471818.1 CDS fliF NC_009831.1 85129 86841 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein complement(85129..86841) Shewanella sediminis HAW-EB3 5613482 YP_001471819.1 CDS Ssed_0078 NC_009831.1 86938 87276 R KEGG: shw:Sputw3181_0462 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(86938..87276) Shewanella sediminis HAW-EB3 5613483 YP_001471820.1 CDS Ssed_0079 NC_009831.1 87319 88620 R KEGG: shw:Sputw3181_0461 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(87319..88620) Shewanella sediminis HAW-EB3 5613484 YP_001471821.1 CDS Ssed_0080 NC_009831.1 88607 89521 R KEGG: ppr:PBPRA0019 hypothetical protein; hypothetical protein complement(88607..89521) Shewanella sediminis HAW-EB3 5613446 YP_001471822.1 CDS Ssed_0081 NC_009831.1 90188 91054 D KEGG: shw:Sputw3181_0460 hypothetical protein; hypothetical protein 90188..91054 Shewanella sediminis HAW-EB3 5613447 YP_001471823.1 CDS Ssed_0082 NC_009831.1 91135 91491 D KEGG: shw:Sputw3181_0459 flagellar motor switch protein FliN; flagellar motor switch protein FliN 91135..91491 Shewanella sediminis HAW-EB3 5613448 YP_001471824.1 CDS fliP NC_009831.1 91494 92222 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 91494..92222 Shewanella sediminis HAW-EB3 5613250 YP_001471825.1 CDS Ssed_0084 NC_009831.1 92434 92703 D KEGG: sbl:Sbal_3985 export protein FliQ, family 3; export protein FliQ 92434..92703 Shewanella sediminis HAW-EB3 5613251 YP_001471826.1 CDS Ssed_0085 NC_009831.1 92706 93479 D KEGG: sbl:Sbal_3986 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 92706..93479 Shewanella sediminis HAW-EB3 5613252 YP_001471827.1 CDS Ssed_0086 NC_009831.1 93496 94626 D KEGG: sdn:Sden_3667 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 93496..94626 Shewanella sediminis HAW-EB3 5613253 YP_001471828.1 CDS Ssed_0087 NC_009831.1 94830 96911 D KEGG: shw:Sputw3181_0454 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 94830..96911 Shewanella sediminis HAW-EB3 5613404 YP_001471829.1 CDS Ssed_0088 NC_009831.1 97042 98034 R KEGG: shn:Shewana3_4119 alpha/beta hydrolase fold; lysophospholipase complement(97042..98034) Shewanella sediminis HAW-EB3 5613405 YP_001471830.1 CDS Ssed_0089 NC_009831.1 98169 99968 R KEGG: sbl:Sbal_0045 protein of unknown function DUF885; hypothetical protein complement(98169..99968) Shewanella sediminis HAW-EB3 5613406 YP_001471831.1 CDS Ssed_0090 NC_009831.1 100160 101500 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(100160..101500) Shewanella sediminis HAW-EB3 5613306 YP_001471832.1 CDS Ssed_0091 NC_009831.1 101794 102273 R KEGG: son:SO4729 hypothetical protein; hypothetical protein complement(101794..102273) Shewanella sediminis HAW-EB3 5613307 YP_001471833.1 CDS Ssed_0092 NC_009831.1 102406 102942 R KEGG: slo:Shew_3718 hypothetical protein; hypothetical protein complement(102406..102942) Shewanella sediminis HAW-EB3 5613308 YP_001471834.1 CDS Ssed_0093 NC_009831.1 102991 103689 R KEGG: slo:Shew_3717 hypothetical protein; hypothetical protein complement(102991..103689) Shewanella sediminis HAW-EB3 5613309 YP_001471835.1 CDS Ssed_0094 NC_009831.1 104402 105022 R KEGG: slo:Shew_3716 cytochrome c, class I; cytochrome c, class I complement(104402..105022) Shewanella sediminis HAW-EB3 5613078 YP_001471836.1 CDS engB NC_009831.1 105192 105854 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 105192..105854 Shewanella sediminis HAW-EB3 5613079 YP_001471837.1 CDS Ssed_0096 NC_009831.1 106612 109413 R KEGG: slo:Shew_3714 DNA polymerase I; DNA-directed DNA polymerase complement(106612..109413) Shewanella sediminis HAW-EB3 5613080 YP_001471838.1 CDS Ssed_0097 NC_009831.1 109761 110414 D KEGG: shn:Shewana3_4108 ThiJ/PfpI domain protein; isoprenoid biosynthesis protein with amidotransferase-like domain 109761..110414 Shewanella sediminis HAW-EB3 5613081 YP_001471839.1 CDS Ssed_0098 NC_009831.1 110846 111682 R KEGG: slo:Shew_3712 rhomboid family protein; rhomboid family protein complement(110846..111682) Shewanella sediminis HAW-EB3 5612911 YP_001471840.1 CDS Ssed_0099 NC_009831.1 111747 112055 R KEGG: slo:Shew_3711 rhodanese domain protein; rhodanese domain-containing protein complement(111747..112055) Shewanella sediminis HAW-EB3 5612912 YP_001471841.1 CDS tdh NC_009831.1 112132 113157 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(112132..113157) Shewanella sediminis HAW-EB3 5612913 YP_001471842.1 CDS Ssed_0101 NC_009831.1 113194 114387 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(113194..114387) Shewanella sediminis HAW-EB3 5612914 YP_001471843.1 CDS Ssed_0102 NC_009831.1 115044 115700 R KEGG: sbl:Sbal_0059 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(115044..115700) Shewanella sediminis HAW-EB3 5612954 YP_001471844.1 CDS Ssed_0103 NC_009831.1 116061 116738 R KEGG: spc:Sputcn32_3900 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(116061..116738) Shewanella sediminis HAW-EB3 5612955 YP_001471845.1 CDS Ssed_0104 NC_009831.1 116896 118164 D KEGG: slo:Shew_3707 three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 116896..118164 Shewanella sediminis HAW-EB3 5612956 YP_001471846.1 CDS Ssed_0105 NC_009831.1 119268 119990 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(119268..119990) Shewanella sediminis HAW-EB3 5612685 YP_001471847.1 CDS Ssed_0106 NC_009831.1 120074 120943 R KEGG: pat:Patl_2129 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(120074..120943) Shewanella sediminis HAW-EB3 5612686 YP_001471848.1 CDS Ssed_0107 NC_009831.1 120940 122043 R KEGG: abo:ABO_0910 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(120940..122043) Shewanella sediminis HAW-EB3 5612687 YP_001471849.1 CDS Ssed_0108 NC_009831.1 122040 122612 R KEGG: shn:Shewana3_1382 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(122040..122612) Shewanella sediminis HAW-EB3 5612688 YP_001471850.1 CDS Ssed_0109 NC_009831.1 122793 123821 D KEGG: slo:Shew_3702 glycosyl transferase, family 9; glycosyl transferase family protein 122793..123821 Shewanella sediminis HAW-EB3 5612856 YP_001471851.1 CDS Ssed_0110 NC_009831.1 123931 124686 D KEGG: sdn:Sden_0205 glycosyl transferase, family 2; glycosyl transferase family protein 123931..124686 Shewanella sediminis HAW-EB3 5612857 YP_001471852.1 CDS Ssed_0111 NC_009831.1 125110 125868 D KEGG: sdn:Sden_0207 glycosyl transferase, family 25; glycosyl transferase family protein 125110..125868 Shewanella sediminis HAW-EB3 5612858 YP_001471853.1 CDS Ssed_0112 NC_009831.1 125937 127007 R KEGG: chy:CHY_2583 glycerol-1-phosphate dehydrogenase; glycerol dehydrogenase complement(125937..127007) Shewanella sediminis HAW-EB3 5612859 YP_001471854.1 CDS Ssed_0113 NC_009831.1 127008 127427 R KEGG: sfr:Sfri_3930 cytidyltransferase-related domain; cytidyltransferase-like protein complement(127008..127427) Shewanella sediminis HAW-EB3 5612450 YP_001471855.1 CDS Ssed_0114 NC_009831.1 127714 128772 D KEGG: sfr:Sfri_3931 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 127714..128772 Shewanella sediminis HAW-EB3 5612451 YP_001471856.1 CDS coaD NC_009831.1 128826 129302 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 128826..129302 Shewanella sediminis HAW-EB3 5612452 YP_001471857.1 CDS Ssed_0116 NC_009831.1 129317 130810 D KEGG: slo:Shew_3691 hypothetical protein; hypothetical protein 129317..130810 Shewanella sediminis HAW-EB3 5612453 YP_001471858.1 CDS Ssed_0117 NC_009831.1 130893 131714 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(130893..131714) Shewanella sediminis HAW-EB3 5612418 YP_001471859.1 CDS Ssed_0118 NC_009831.1 131773 132255 R KEGG: sbl:Sbal_0076 hypothetical protein; hypothetical protein complement(131773..132255) Shewanella sediminis HAW-EB3 5612419 YP_001471860.1 CDS Ssed_0119 NC_009831.1 132415 133401 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(132415..133401) Shewanella sediminis HAW-EB3 5612420 YP_001471861.1 CDS Ssed_0120 NC_009831.1 133479 135284 R KEGG: slo:Shew_3687 molybdopterin-guanine dinucleotide biosynthesis protein B; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA complement(133479..135284) Shewanella sediminis HAW-EB3 5612442 YP_001471862.1 CDS Ssed_0121 NC_009831.1 135299 135889 R KEGG: slo:Shew_3686 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(135299..135889) Shewanella sediminis HAW-EB3 5612443 YP_001471863.1 CDS Ssed_0122 NC_009831.1 135873 136592 R KEGG: slo:Shew_3685 ABC transporter-related protein; ABC transporter-like protein complement(135873..136592) Shewanella sediminis HAW-EB3 5612444 YP_001471864.1 CDS Ssed_0123 NC_009831.1 136595 137302 R KEGG: slo:Shew_3684 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(136595..137302) Shewanella sediminis HAW-EB3 5612445 YP_001471865.1 CDS Ssed_0124 NC_009831.1 137397 138209 R KEGG: slo:Shew_3683 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(137397..138209) Shewanella sediminis HAW-EB3 5612309 YP_001471866.1 CDS Ssed_0125 NC_009831.1 138433 139866 D KEGG: slo:Shew_3682 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 138433..139866 Shewanella sediminis HAW-EB3 5612310 YP_001471867.1 CDS Ssed_0126 NC_009831.1 139868 141985 D KEGG: slo:Shew_3681 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 139868..141985 Shewanella sediminis HAW-EB3 5612311 YP_001471868.1 CDS Ssed_0127 NC_009831.1 142251 142721 R KEGG: saz:Sama_0127 acetyltransferase, GNAT family; acetyltransferase complement(142251..142721) Shewanella sediminis HAW-EB3 5612342 YP_001471869.1 CDS Ssed_0128 NC_009831.1 142834 143499 R KEGG: sbl:Sbal_0086 hypothetical protein; hypothetical protein complement(142834..143499) Shewanella sediminis HAW-EB3 5612343 YP_001471870.1 CDS Ssed_0129 NC_009831.1 143796 144581 D KEGG: shw:Sputw3181_0079 hypothetical protein; hypothetical protein 143796..144581 Shewanella sediminis HAW-EB3 5612344 YP_001471871.1 CDS Ssed_0130 NC_009831.1 144687 145931 R KEGG: slo:Shew_3677 isochorismate synthase; isochorismate synthase complement(144687..145931) Shewanella sediminis HAW-EB3 5612345 YP_001471872.1 CDS Ssed_0131 NC_009831.1 146463 148496 D KEGG: sbl:Sbal_0089 TonB-dependent receptor, plug; TonB-dependent receptor, plug 146463..148496 Shewanella sediminis HAW-EB3 5612277 YP_001471873.1 CDS Ssed_0132 NC_009831.1 148659 150035 D KEGG: sbl:Sbal_0090 ABC transporter related; ABC transporter 148659..150035 Shewanella sediminis HAW-EB3 5612278 YP_001471874.1 CDS Ssed_0133 NC_009831.1 150025 150717 D KEGG: sbl:Sbal_0091 cobalt transport protein; cobalt transport protein 150025..150717 Shewanella sediminis HAW-EB3 5612279 YP_001471875.1 CDS Ssed_0134 NC_009831.1 150785 151330 D KEGG: slo:Shew_3673 hypothetical protein; hypothetical protein 150785..151330 Shewanella sediminis HAW-EB3 5612188 YP_001471876.1 CDS Ssed_0135 NC_009831.1 151331 152086 D KEGG: slo:Shew_3672 hypothetical protein; hypothetical protein 151331..152086 Shewanella sediminis HAW-EB3 5612189 YP_001471877.1 CDS Ssed_0136 NC_009831.1 152092 152310 D KEGG: shm:Shewmr7_3955 hypothetical protein; hypothetical protein 152092..152310 Shewanella sediminis HAW-EB3 5612190 YP_001471878.1 CDS Ssed_0137 NC_009831.1 152571 153749 D KEGG: son:SO4711 HD domain protein; HD domain-containing protein 152571..153749 Shewanella sediminis HAW-EB3 5612191 YP_001471879.1 CDS Ssed_0138 NC_009831.1 153896 154564 D KEGG: sbl:Sbal_0097 paraquat-inducible protein A; paraquat-inducible protein A 153896..154564 Shewanella sediminis HAW-EB3 5611677 YP_001471880.1 CDS Ssed_0139 NC_009831.1 154595 157789 R KEGG: neu:NE0049 sensory transduction histidine kinase; histidine kinase complement(154595..157789) Shewanella sediminis HAW-EB3 5611678 YP_001471881.1 CDS Ssed_0140 NC_009831.1 158116 158796 D KEGG: slo:Shew_3669 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 158116..158796 Shewanella sediminis HAW-EB3 5611679 YP_001471882.1 CDS Ssed_0141 NC_009831.1 159371 160315 R KEGG: spc:Sputcn32_3868 conserved hypothetical protein 698; hypothetical protein complement(159371..160315) Shewanella sediminis HAW-EB3 5611680 YP_001471883.1 CDS Ssed_0142 NC_009831.1 160490 161845 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(160490..161845) Shewanella sediminis HAW-EB3 5611837 YP_001471884.1 CDS Ssed_0143 NC_009831.1 162024 162545 R KEGG: shn:Shewana3_4053 hypothetical protein; hypothetical protein complement(162024..162545) Shewanella sediminis HAW-EB3 5611838 YP_001471885.1 CDS Ssed_0144 NC_009831.1 162665 163441 R KEGG: slo:Shew_3658 hypothetical protein; hypothetical protein complement(162665..163441) Shewanella sediminis HAW-EB3 5611839 YP_001471886.1 CDS Ssed_0145 NC_009831.1 163745 165784 D KEGG: slo:Shew_3657 oligopeptidase A; oligopeptidase A 163745..165784 Shewanella sediminis HAW-EB3 5610995 YP_001471887.1 CDS Ssed_0146 NC_009831.1 165926 166345 R hypothetical protein complement(165926..166345) Shewanella sediminis HAW-EB3 5610996 YP_001471888.1 CDS Ssed_0147 NC_009831.1 166663 167193 D KEGG: shm:Shewmr7_3934 hypothetical protein; hypothetical protein 166663..167193 Shewanella sediminis HAW-EB3 5610997 YP_001471889.1 CDS Ssed_0148 NC_009831.1 167248 167898 R KEGG: slo:Shew_0027 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(167248..167898) Shewanella sediminis HAW-EB3 5610998 YP_001471890.1 CDS Ssed_0149 NC_009831.1 168072 168977 R KEGG: saz:Sama_3549 transcriptional regulator, LyrR family; LyrR family transcriptional regulator complement(168072..168977) Shewanella sediminis HAW-EB3 5611490 YP_001471891.1 CDS Ssed_0150 NC_009831.1 169192 169881 D KEGG: sbl:Sbal_0127 conserved hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase 169192..169881 Shewanella sediminis HAW-EB3 5611491 YP_001471892.1 CDS Ssed_0151 NC_009831.1 170152 170910 R KEGG: slo:Shew_0030 hypothetical protein; hypothetical protein complement(170152..170910) Shewanella sediminis HAW-EB3 5611492 YP_001471893.1 CDS Ssed_0152 NC_009831.1 171346 172503 D KEGG: slo:Shew_0031 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 171346..172503 Shewanella sediminis HAW-EB3 5611132 YP_001471894.1 CDS Ssed_0153 NC_009831.1 172513 175665 D KEGG: slo:Shew_0032 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 172513..175665 Shewanella sediminis HAW-EB3 5611133 YP_001471895.1 CDS Ssed_0154 NC_009831.1 175802 176479 R KEGG: sfr:Sfri_2500 glutathione S-transferase, C-terminal domain protein; glutathione S-transferase domain-containing protein complement(175802..176479) Shewanella sediminis HAW-EB3 5611134 YP_001471896.1 CDS Ssed_0155 NC_009831.1 176652 177554 D KEGG: sfr:Sfri_2100 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 176652..177554 Shewanella sediminis HAW-EB3 5611135 YP_001471897.1 CDS Ssed_0156 NC_009831.1 177647 179263 R KEGG: slo:Shew_3654 AbgT transporter; AbgT transporter complement(177647..179263) Shewanella sediminis HAW-EB3 5613902 YP_001471898.1 CDS Ssed_0157 NC_009831.1 180321 180890 D KEGG: slo:Shew_3652 LemA family protein; LemA family protein 180321..180890 Shewanella sediminis HAW-EB3 5613903 YP_001471899.1 CDS Ssed_0158 NC_009831.1 180949 181959 D KEGG: slo:Shew_3651 hypothetical protein; hypothetical protein 180949..181959 Shewanella sediminis HAW-EB3 5613904 YP_001471900.1 CDS Ssed_0159 NC_009831.1 181968 182705 D KEGG: slo:Shew_3650 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 181968..182705 Shewanella sediminis HAW-EB3 5613905 YP_001471901.1 CDS vmrA NC_009831.1 182868 184274 R sodium/drug antiporter; functions as a Na(+)-driven Na(+)/drug antiporter; member of multidrug and toxic compound extrusion (MATE) family; extrudes acriflavines and other compounds by utilizing the sodium gradient; multidrug efflux pump VmrA complement(182868..184274) Shewanella sediminis HAW-EB3 5613235 YP_001471902.1 CDS Ssed_0161 NC_009831.1 184437 185330 D KEGG: ppr:PBPRB1939 hypothetical transcriptional regulator; transcriptional regulator 184437..185330 Shewanella sediminis HAW-EB3 5613236 YP_001471903.1 CDS Ssed_0162 NC_009831.1 185416 185787 D KEGG: spc:Sputcn32_0958 hypothetical protein; hypothetical protein 185416..185787 Shewanella sediminis HAW-EB3 5613237 YP_001471904.1 CDS Ssed_0163 NC_009831.1 185896 186738 R KEGG: slo:Shew_3648 protein of unknown function DUF519; hypothetical protein complement(185896..186738) Shewanella sediminis HAW-EB3 5613086 YP_001471905.1 CDS Ssed_0164 NC_009831.1 186935 187711 D KEGG: slo:Shew_3647 protein of unknown function DUF548; hypothetical protein 186935..187711 Shewanella sediminis HAW-EB3 5613087 YP_001471906.1 CDS Ssed_0165 NC_009831.1 187715 188101 R KEGG: sfr:Sfri_3020 hypothetical protein; hypothetical protein complement(187715..188101) Shewanella sediminis HAW-EB3 5613088 YP_001471907.1 CDS Ssed_0166 NC_009831.1 188256 189107 R KEGG: slo:Shew_3640 hypothetical protein; hypothetical protein complement(188256..189107) Shewanella sediminis HAW-EB3 5613089 YP_001471908.1 CDS envZ NC_009831.1 189301 190611 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein complement(189301..190611) Shewanella sediminis HAW-EB3 5609880 YP_001471909.1 CDS ompR NC_009831.1 190672 191397 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(190672..191397) Shewanella sediminis HAW-EB3 5609881 YP_001471910.1 CDS Ssed_0169 NC_009831.1 191748 191966 R KEGG: mem:Memar_1885 protein of unknown function UPF0066; hypothetical protein complement(191748..191966) Shewanella sediminis HAW-EB3 5609882 YP_001471911.1 CDS Ssed_0170 NC_009831.1 192343 192834 D KEGG: slo:Shew_3636 transcription elongation factor GreB; transcription elongation factor GreB 192343..192834 Shewanella sediminis HAW-EB3 5610327 YP_001471912.1 CDS Ssed_0171 NC_009831.1 193063 194862 D KEGG: slo:Shew_3635 thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate binding domain-containing protein 193063..194862 Shewanella sediminis HAW-EB3 5610328 YP_001471913.1 CDS Ssed_0172 NC_009831.1 195071 195442 D hypothetical protein 195071..195442 Shewanella sediminis HAW-EB3 5610329 YP_001471914.1 CDS Ssed_0173 NC_009831.1 195536 197950 D KEGG: slo:Shew_3634 RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 195536..197950 Shewanella sediminis HAW-EB3 5610330 YP_001471915.1 CDS Ssed_0174 NC_009831.1 198309 200321 D KEGG: slo:Shew_3632 sulfatase; sulfatase 198309..200321 Shewanella sediminis HAW-EB3 5614112 YP_001471916.1 CDS Ssed_0175 NC_009831.1 200314 200817 R KEGG: slo:Shew_3631 hypothetical protein; hypothetical protein complement(200314..200817) Shewanella sediminis HAW-EB3 5614113 YP_001471917.1 CDS Ssed_0176 NC_009831.1 200878 201672 R KEGG: shm:Shewmr7_3882 BioH protein; carboxylesterase complement(200878..201672) Shewanella sediminis HAW-EB3 5614114 YP_001471918.1 CDS Ssed_0177 NC_009831.1 201710 202510 D KEGG: shw:Sputw3181_0113 competence protein ComF; competence protein ComF 201710..202510 Shewanella sediminis HAW-EB3 5614115 YP_001471919.1 CDS Ssed_0178 NC_009831.1 202523 205069 R KEGG: slo:Shew_0105 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A complement(202523..205069) Shewanella sediminis HAW-EB3 5610769 YP_001471920.1 CDS Ssed_0179 NC_009831.1 205299 205877 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 205299..205877 Shewanella sediminis HAW-EB3 5610770 YP_001471921.1 CDS Ssed_0180 NC_009831.1 206370 207707 R KEGG: sbl:Sbal_0144 MATE efflux family protein; MATE efflux family protein complement(206370..207707) Shewanella sediminis HAW-EB3 5610771 YP_001471922.1 CDS Ssed_0181 NC_009831.1 207731 208792 D KEGG: sbl:Sbal_0145 polysaccharide deacetylase; polysaccharide deacetylase 207731..208792 Shewanella sediminis HAW-EB3 5611416 YP_001471923.1 CDS Ssed_0182 NC_009831.1 208820 209857 R KEGG: slo:Shew_0109 response regulator receiver modulated CheB methylesterase; protein-glutamate methylesterase complement(208820..209857) Shewanella sediminis HAW-EB3 5611417 YP_001471924.1 CDS Ssed_0183 NC_009831.1 209961 210803 R KEGG: saz:Sama_3498 protein-glutamate O-methyltransferase; protein-glutamate O-methyltransferase complement(209961..210803) Shewanella sediminis HAW-EB3 5611418 YP_001471925.1 CDS Ssed_0184 NC_009831.1 210845 213436 R KEGG: slo:Shew_0111 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor complement(210845..213436) Shewanella sediminis HAW-EB3 5611419 YP_001471926.1 CDS Ssed_0185 NC_009831.1 213460 214011 R KEGG: slo:Shew_0112 CheW protein; chemotaxis protein CheW complement(213460..214011) Shewanella sediminis HAW-EB3 5611820 YP_001471927.1 CDS Ssed_0186 NC_009831.1 214063 216129 R KEGG: slo:Shew_0113 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase complement(214063..216129) Shewanella sediminis HAW-EB3 5611821 YP_001471928.1 CDS Ssed_0187 NC_009831.1 216175 216537 R KEGG: saz:Sama_3494 response regulator receiver protein; response regulator receiver protein complement(216175..216537) Shewanella sediminis HAW-EB3 5611822 YP_001471929.1 CDS Ssed_0188 NC_009831.1 216534 216830 R KEGG: slo:Shew_0115 hypothetical protein; hypothetical protein complement(216534..216830) Shewanella sediminis HAW-EB3 5611745 YP_001471930.1 CDS Ssed_0189 NC_009831.1 217009 217665 R KEGG: shw:Sputw3181_0125 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(217009..217665) Shewanella sediminis HAW-EB3 5611746 YP_001471931.1 CDS Ssed_0190 NC_009831.1 217720 218634 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(217720..218634) Shewanella sediminis HAW-EB3 5611747 YP_001471932.1 CDS Ssed_0191 NC_009831.1 218712 219698 R KEGG: slo:Shew_0118 cytochrome oxidase assembly; cytochrome oxidase assembly complement(218712..219698) Shewanella sediminis HAW-EB3 5611748 YP_001471933.1 CDS Ssed_0192 NC_009831.1 219698 220243 R KEGG: slo:Shew_0119 hypothetical protein; hypothetical protein complement(219698..220243) Shewanella sediminis HAW-EB3 5612665 YP_001471934.1 CDS Ssed_0193 NC_009831.1 220444 221202 R KEGG: shw:Sputw3181_0129 hypothetical protein; hypothetical protein complement(220444..221202) Shewanella sediminis HAW-EB3 5612666 YP_001471935.1 CDS Ssed_0194 NC_009831.1 221213 221398 D KEGG: slo:Shew_0121 hypothetical protein; hypothetical protein 221213..221398 Shewanella sediminis HAW-EB3 5612667 YP_001471936.1 CDS Ssed_0195 NC_009831.1 221470 222345 R KEGG: slo:Shew_0122 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(221470..222345) Shewanella sediminis HAW-EB3 5612668 YP_001471937.1 CDS Ssed_0196 NC_009831.1 222342 222911 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(222342..222911) Shewanella sediminis HAW-EB3 5612482 YP_001471938.1 CDS Ssed_0197 NC_009831.1 222914 224518 R KEGG: shm:Shewmr7_3865 cytochrome-c oxidase; cytochrome-c oxidase complement(222914..224518) Shewanella sediminis HAW-EB3 5612483 YP_001471939.1 CDS Ssed_0198 NC_009831.1 224528 226102 R KEGG: slo:Shew_0125 cytochrome c oxidase, subunit II; cytochrome-c oxidase complement(224528..226102) Shewanella sediminis HAW-EB3 5612484 YP_001471940.1 CDS Ssed_0199 NC_009831.1 226521 227033 R KEGG: sbl:Sbal_0155 hypothetical protein; hypothetical protein complement(226521..227033) Shewanella sediminis HAW-EB3 5612903 YP_001471941.1 CDS Ssed_0200 NC_009831.1 227030 227650 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(227030..227650) Shewanella sediminis HAW-EB3 5612904 YP_001471942.1 CDS Ssed_0201 NC_009831.1 227801 230224 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 227801..230224 Shewanella sediminis HAW-EB3 5612905 YP_001471943.1 CDS Ssed_0202 NC_009831.1 230224 231480 D KEGG: slo:Shew_3531 aromatic amino acid transporter; aromatic amino acid transporter 230224..231480 Shewanella sediminis HAW-EB3 5612906 YP_001471944.1 CDS Ssed_0203 NC_009831.1 231551 232576 R KEGG: ppr:PBPRB1682 hypothetical AraC-type transcriptional regulator; AraC family transcriptional regulator complement(231551..232576) Shewanella sediminis HAW-EB3 5614077 YP_001471945.1 CDS Ssed_0204 NC_009831.1 232705 233040 D KEGG: ppr:PBPRB1681 permease of the major facilitator superfamily; major facilitator superfamily permease 232705..233040 Shewanella sediminis HAW-EB3 5614078 YP_001471946.1 CDS Ssed_0205 NC_009831.1 233033 234256 D KEGG: ppr:PBPRB1680 multidrug resistance efflux pump; multidrug resistance efflux pump 233033..234256 Shewanella sediminis HAW-EB3 5614079 YP_001471947.1 CDS Ssed_0206 NC_009831.1 234315 235505 R KEGG: sdn:Sden_0245 GGDEF domain; diguanylate cyclase complement(234315..235505) Shewanella sediminis HAW-EB3 5611486 YP_001471948.1 CDS Ssed_0207 NC_009831.1 235685 236098 R KEGG: slo:Shew_3532 globin; globin complement(235685..236098) Shewanella sediminis HAW-EB3 5611487 YP_001471949.1 CDS Ssed_0208 NC_009831.1 236322 237110 D KEGG: slo:Shew_3533 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 236322..237110 Shewanella sediminis HAW-EB3 5611488 YP_001471950.1 CDS Ssed_0209 NC_009831.1 237230 239263 D KEGG: shw:Sputw3181_2790 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 237230..239263 Shewanella sediminis HAW-EB3 5611489 YP_001471951.1 CDS Ssed_0210 NC_009831.1 239331 242468 R KEGG: slo:Shew_3534 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(239331..242468) Shewanella sediminis HAW-EB3 5612987 YP_001471952.1 CDS Ssed_0211 NC_009831.1 242600 244552 R KEGG: slo:Shew_3535 efflux transporter, RND family, MFP subunit; membrane-fusion protein-like protein complement(242600..244552) Shewanella sediminis HAW-EB3 5612988 YP_001471953.1 CDS Ssed_0212 NC_009831.1 244575 245153 R KEGG: slo:Shew_3536 hypothetical protein; hypothetical protein complement(244575..245153) Shewanella sediminis HAW-EB3 5612989 YP_001471954.1 CDS Ssed_0213 NC_009831.1 245418 245819 R KEGG: slo:Shew_3537 hypothetical protein; hypothetical protein complement(245418..245819) Shewanella sediminis HAW-EB3 5613924 YP_001471955.1 CDS Ssed_0214 NC_009831.1 245985 246410 R KEGG: sfr:Sfri_0591 hypothetical protein; hypothetical protein complement(245985..246410) Shewanella sediminis HAW-EB3 5613925 YP_001471956.1 CDS Ssed_0215 NC_009831.1 246604 247095 R KEGG: slo:Shew_3539 hypothetical protein; hypothetical protein complement(246604..247095) Shewanella sediminis HAW-EB3 5613926 YP_001471957.1 CDS Ssed_0216 NC_009831.1 247524 248087 D KEGG: saz:Sama_3471 tetraheme cytochrome c; tetraheme cytochrome c 247524..248087 Shewanella sediminis HAW-EB3 5613927 YP_001471958.1 CDS Ssed_0217 NC_009831.1 248722 249012 R KEGG: shn:Shewana3_3974 protein of unknown function DUF1145; hypothetical protein complement(248722..249012) Shewanella sediminis HAW-EB3 5613302 YP_001471959.1 CDS Ssed_0218 NC_009831.1 249075 249656 R KEGG: shw:Sputw3181_3914 methyltransferase; methyltransferase complement(249075..249656) Shewanella sediminis HAW-EB3 5613303 YP_001471960.1 CDS Ssed_0219 NC_009831.1 250086 251708 D KEGG: slo:Shew_3606 signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY 250086..251708 Shewanella sediminis HAW-EB3 5613304 YP_001471961.1 CDS Ssed_0220 NC_009831.1 251738 252430 D KEGG: slo:Shew_3605 cell division ATP-binding protein FtsE; cell division ATP-binding protein FtsE 251738..252430 Shewanella sediminis HAW-EB3 5613305 YP_001471962.1 CDS Ssed_0221 NC_009831.1 252433 253398 D KEGG: slo:Shew_3604 protein of unknown function DUF214; hypothetical protein 252433..253398 Shewanella sediminis HAW-EB3 5613862 YP_001471963.1 CDS Ssed_0222 NC_009831.1 253663 254520 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 253663..254520 Shewanella sediminis HAW-EB3 5613863 YP_001471964.1 CDS Ssed_0223 NC_009831.1 254948 256462 R KEGG: shw:Sputw3181_3901 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase complement(254948..256462) Shewanella sediminis HAW-EB3 5613864 YP_001471965.1 CDS Ssed_0224 NC_009831.1 256472 257527 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(256472..257527) Shewanella sediminis HAW-EB3 5613596 YP_001471966.1 CDS Ssed_0225 NC_009831.1 257524 258306 R KEGG: slo:Shew_3600 alpha/beta hydrolase fold; alpha/beta hydrolase complement(257524..258306) Shewanella sediminis HAW-EB3 5613597 YP_001471967.1 CDS Ssed_0226 NC_009831.1 258306 260015 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(258306..260015) Shewanella sediminis HAW-EB3 5613598 YP_001471968.1 CDS Ssed_0227 NC_009831.1 260780 261730 D KEGG: sfr:Sfri_3686 cytochrome c family protein; cytochrome c family protein 260780..261730 Shewanella sediminis HAW-EB3 5613599 YP_001471969.1 CDS Ssed_0228 NC_009831.1 261745 263754 D KEGG: sfr:Sfri_3685 outer membrane protein; outer membrane protein 261745..263754 Shewanella sediminis HAW-EB3 5613469 YP_001471970.1 CDS Ssed_0229 NC_009831.1 263789 266305 D KEGG: spc:Sputcn32_0627 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; anaerobic dimethyl sulfoxide reductase subunit A 263789..266305 Shewanella sediminis HAW-EB3 5613470 YP_001471971.1 CDS Ssed_0230 NC_009831.1 266320 266997 D KEGG: son:SO1430 anaerobic dimethyl sulfoxide reductase, B subunit; anaerobic dimethylsulfoxide reductase subunit B 266320..266997 Shewanella sediminis HAW-EB3 5613471 YP_001471972.1 CDS Ssed_0231 NC_009831.1 267075 267734 D KEGG: sfr:Sfri_3682 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 267075..267734 Shewanella sediminis HAW-EB3 5613632 YP_001471973.1 CDS Ssed_0232 NC_009831.1 267775 268251 D KEGG: sfr:Sfri_3125 hypothetical protein; hypothetical protein 267775..268251 Shewanella sediminis HAW-EB3 5613633 YP_001471974.1 CDS Ssed_0233 NC_009831.1 268291 269031 R KEGG: son:SO1415 transcriptional regulator, TetR family; hypothetical protein complement(268291..269031) Shewanella sediminis HAW-EB3 5613634 YP_001471975.1 CDS Ssed_0234 NC_009831.1 269290 269898 D KEGG: son:SO3871 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein 269290..269898 Shewanella sediminis HAW-EB3 5613635 YP_001471976.1 CDS Ssed_0235 NC_009831.1 269907 270542 D KEGG: son:SO3870 disulfide bond formation protein; disulfide bond formation protein 269907..270542 Shewanella sediminis HAW-EB3 5614067 YP_001471977.1 CDS Ssed_0236 NC_009831.1 270603 271346 D KEGG: vfi:VF0719 sugar hydrolase; hypothetical protein 270603..271346 Shewanella sediminis HAW-EB3 5614068 YP_001471978.1 CDS Ssed_0237 NC_009831.1 271380 273083 D KEGG: son:SO3872 arylsulfate sulfotransferase; arylsulfate sulfotransferase 271380..273083 Shewanella sediminis HAW-EB3 5614069 YP_001471979.1 CDS Ssed_0238 NC_009831.1 273869 274867 D KEGG: saz:Sama_2899 transcriptional regulator-like protein; transcriptional regulator-like protein 273869..274867 Shewanella sediminis HAW-EB3 5614070 YP_001471980.1 CDS Ssed_0239 NC_009831.1 275085 276050 R KEGG: shn:Shewana3_3964 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(275085..276050) Shewanella sediminis HAW-EB3 5614165 YP_001471981.1 CDS Ssed_0240 NC_009831.1 276582 277082 D KEGG: slo:Shew_3155 hypothetical protein; hypothetical protein 276582..277082 Shewanella sediminis HAW-EB3 5614166 YP_001471982.1 CDS Ssed_0241 NC_009831.1 277170 277643 D KEGG: saz:Sama_2902 hypothetical protein; hypothetical protein 277170..277643 Shewanella sediminis HAW-EB3 5614167 YP_001471983.1 CDS Ssed_0242 NC_009831.1 277659 278336 D KEGG: she:Shewmr4_3763 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 277659..278336 Shewanella sediminis HAW-EB3 5614200 YP_001471984.1 CDS Ssed_0243 NC_009831.1 278333 279274 D KEGG: slo:Shew_3158 polysulphide reductase, NrfD; polysulfide reductase NrfD 278333..279274 Shewanella sediminis HAW-EB3 5614201 YP_001471985.1 CDS Ssed_0244 NC_009831.1 279296 279586 D KEGG: shw:Sputw3181_2184 hypothetical protein; hypothetical protein 279296..279586 Shewanella sediminis HAW-EB3 5614202 YP_001471986.1 CDS Ssed_0245 NC_009831.1 279689 279826 R KEGG: slo:Shew_3598 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(279689..279826) Shewanella sediminis HAW-EB3 5614203 YP_001471987.1 CDS Ssed_0246 NC_009831.1 280092 280697 D KEGG: slo:Shew_3596 methyltransferase type 11; type 11 methyltransferase 280092..280697 Shewanella sediminis HAW-EB3 5613541 YP_001471988.1 CDS Ssed_0247 NC_009831.1 280758 281210 R KEGG: shn:Shewana3_3955 protein of unknown function DUF1332; hypothetical protein complement(280758..281210) Shewanella sediminis HAW-EB3 5613542 YP_001471989.1 CDS Ssed_0248 NC_009831.1 281329 281913 R KEGG: slo:Shew_3594 hypothetical protein; hypothetical protein complement(281329..281913) Shewanella sediminis HAW-EB3 5613543 YP_001471990.1 CDS Ssed_0249 NC_009831.1 282032 282748 D KEGG: slo:Shew_3593 hypothetical protein; hypothetical protein 282032..282748 Shewanella sediminis HAW-EB3 5610435 YP_001471991.1 CDS Ssed_0250 NC_009831.1 282807 284225 D KEGG: slo:Shew_3592 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 282807..284225 Shewanella sediminis HAW-EB3 5610436 YP_001471992.1 CDS Ssed_0251 NC_009831.1 284323 285573 D KEGG: slo:Shew_3591 hypothetical protein; hypothetical protein 284323..285573 Shewanella sediminis HAW-EB3 5610437 YP_001471993.1 CDS Ssed_0252 NC_009831.1 285705 286073 R KEGG: slo:Shew_3590 hypothetical protein; hypothetical protein complement(285705..286073) Shewanella sediminis HAW-EB3 5610438 YP_001471994.1 CDS Ssed_0253 NC_009831.1 286268 287230 R KEGG: slo:Shew_3589 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(286268..287230) Shewanella sediminis HAW-EB3 5609692 YP_001471995.1 CDS Ssed_0254 NC_009831.1 287338 288540 D KEGG: slo:Shew_3588 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 287338..288540 Shewanella sediminis HAW-EB3 5609693 YP_001471996.1 CDS Ssed_0255 NC_009831.1 288663 289553 R KEGG: sbl:Sbal_0197 hypothetical protein; hypothetical protein complement(288663..289553) Shewanella sediminis HAW-EB3 5609694 YP_001471997.1 CDS Ssed_0256 NC_009831.1 289774 290367 D KEGG: shn:Shewana3_3947 DTW domain containing protein; DTW domain-containing protein 289774..290367 Shewanella sediminis HAW-EB3 5609695 YP_001471998.1 CDS Ssed_0257 NC_009831.1 290669 292780 R KEGG: slo:Shew_3585 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(290669..292780) Shewanella sediminis HAW-EB3 5610630 YP_001471999.1 CDS Ssed_0258 NC_009831.1 293104 293421 D KEGG: slo:Shew_3584 hypothetical protein; hypothetical protein 293104..293421 Shewanella sediminis HAW-EB3 5610631 YP_001472000.1 CDS Ssed_0259 NC_009831.1 293459 294094 D KEGG: slo:Shew_3583 methyltransferase type 12; type 12 methyltransferase 293459..294094 Shewanella sediminis HAW-EB3 5610632 YP_001472001.1 CDS Ssed_0260 NC_009831.1 294163 294876 R KEGG: slo:Shew_3582 hypothetical protein; hypothetical protein complement(294163..294876) Shewanella sediminis HAW-EB3 5613203 YP_001472002.1 CDS Ssed_0261 NC_009831.1 295106 296437 D KEGG: slo:Shew_3581 peptidase M16 domain protein; peptidase M16 domain-containing protein 295106..296437 Shewanella sediminis HAW-EB3 5613204 YP_001472003.1 CDS Ssed_0262 NC_009831.1 296434 297876 D KEGG: slo:Shew_3580 peptidase M16 domain protein; peptidase M16 domain-containing protein 296434..297876 Shewanella sediminis HAW-EB3 5613205 YP_001472004.1 CDS Ssed_0263 NC_009831.1 298019 298585 D KEGG: saz:Sama_3442 conserved hypothetical protein; hypothetical protein 298019..298585 Shewanella sediminis HAW-EB3 5613206 YP_001472005.1 CDS Ssed_0264 NC_009831.1 298542 299078 D KEGG: she:Shewmr4_3739 hypothetical protein; hypothetical protein 298542..299078 Shewanella sediminis HAW-EB3 5610487 YP_001472006.1 CDS Ssed_0265 NC_009831.1 299126 299590 R KEGG: slo:Shew_3577 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase complement(299126..299590) Shewanella sediminis HAW-EB3 5610488 YP_001472007.1 CDS Ssed_0266 NC_009831.1 299843 300778 D KEGG: ppr:PBPRA2008 transcriptional regulator, LysR family; LysR family transcriptional regulator 299843..300778 Shewanella sediminis HAW-EB3 5610489 YP_001472008.1 CDS Ssed_0267 NC_009831.1 300775 301671 R KEGG: ppr:PBPRA2007 hypothetical pyruvate formate lyase activating enzyme; pyruvate formate lyase activating enzyme complement(300775..301671) Shewanella sediminis HAW-EB3 5614219 YP_001472009.1 CDS Ssed_0268 NC_009831.1 301643 303196 R KEGG: son:SO2407 hypothetical protein; hypothetical protein complement(301643..303196) Shewanella sediminis HAW-EB3 5614220 YP_001472010.1 CDS Ssed_0269 NC_009831.1 303447 304967 R KEGG: shm:Shewmr7_3772 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase complement(303447..304967) Shewanella sediminis HAW-EB3 5614221 YP_001472011.1 CDS Ssed_0270 NC_009831.1 305272 307068 D KEGG: shw:Sputw3181_0215 GAF modulated sigma54 specific transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 305272..307068 Shewanella sediminis HAW-EB3 5614222 YP_001472012.1 CDS Ssed_0271 NC_009831.1 307242 308222 D KEGG: slo:Shew_3572 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 307242..308222 Shewanella sediminis HAW-EB3 5609626 YP_001472013.1 CDS Ssed_0272 NC_009831.1 308219 309136 R KEGG: vfi:VF0021 transcriptional regulators, LysR family; LysR family transcriptional regulator complement(308219..309136) Shewanella sediminis HAW-EB3 5609627 YP_001472014.1 CDS Ssed_0273 NC_009831.1 309405 310925 D KEGG: shm:Shewmr7_2230 flavocytochrome c; flavocytochrome c 309405..310925 Shewanella sediminis HAW-EB3 5609628 YP_001472015.1 CDS Ssed_0274 NC_009831.1 310954 311307 D KEGG: spc:Sputcn32_3535 tetraheme cytochrome c; tetraheme cytochrome c 310954..311307 Shewanella sediminis HAW-EB3 5609629 YP_001472016.1 CDS Ssed_0275 NC_009831.1 311595 312758 D KEGG: slo:Shew_1530 porin; porin 311595..312758 Shewanella sediminis HAW-EB3 5611298 YP_001472017.1 CDS Ssed_0276 NC_009831.1 312872 313735 R KEGG: sfr:Sfri_3892 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(312872..313735) Shewanella sediminis HAW-EB3 5611299 YP_001472018.1 CDS Ssed_0277 NC_009831.1 313869 314513 D KEGG: sbl:Sbal_0259 transcriptional regulator, TetR family; TetR family transcriptional regulator 313869..314513 Shewanella sediminis HAW-EB3 5611300 YP_001472019.1 CDS Ssed_0278 NC_009831.1 314510 315877 R KEGG: sbl:Sbal_0260 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(314510..315877) Shewanella sediminis HAW-EB3 5610577 YP_001472020.1 CDS Ssed_0279 NC_009831.1 315877 316560 R KEGG: slo:Shew_3570 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(315877..316560) Shewanella sediminis HAW-EB3 5610578 YP_001472021.1 CDS Ssed_0280 NC_009831.1 316789 317295 D KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related; hypothetical protein 316789..317295 Shewanella sediminis HAW-EB3 5610579 YP_001472022.1 CDS Ssed_0281 NC_009831.1 317399 318268 D KEGG: slo:Shew_3568 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 317399..318268 Shewanella sediminis HAW-EB3 5610580 YP_001472023.1 CDS Ssed_0282 NC_009831.1 331803 333218 R KEGG: shw:Sputw3181_0221 nitrogen metabolism transcriptional regulator, NtrC, fis family; nitrogen metabolism transcriptional regulator NtrC complement(331803..333218) Shewanella sediminis HAW-EB3 5611948 YP_001472024.1 CDS Ssed_0283 NC_009831.1 333272 334312 R KEGG: shw:Sputw3181_0222 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase, nitrogen specific, NtrB complement(333272..334312) Shewanella sediminis HAW-EB3 5610444 YP_001472025.1 CDS Ssed_0284 NC_009831.1 334444 334980 R KEGG: slo:Shew_3559 hypothetical protein; hypothetical protein complement(334444..334980) Shewanella sediminis HAW-EB3 5610445 YP_001472026.1 CDS Ssed_0285 NC_009831.1 335181 335858 R KEGG: sbl:Sbal_0270 ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(335181..335858) Shewanella sediminis HAW-EB3 5612516 YP_001472027.1 CDS Ssed_0286 NC_009831.1 335941 337098 R KEGG: spc:Sputcn32_0377 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(335941..337098) Shewanella sediminis HAW-EB3 5612517 YP_001472028.1 CDS Ssed_0287 NC_009831.1 337213 337815 R KEGG: shw:Sputw3181_0228 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(337213..337815) Shewanella sediminis HAW-EB3 5612518 YP_001472029.1 CDS Ssed_0288 NC_009831.1 337975 338292 R hypothetical protein complement(337975..338292) Shewanella sediminis HAW-EB3 5612519 YP_001472030.1 CDS Ssed_0289 NC_009831.1 338414 339613 R KEGG: shm:Shewmr7_3722 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(338414..339613) Shewanella sediminis HAW-EB3 5611523 YP_001472031.1 CDS Ssed_0290 NC_009831.1 339691 342486 R KEGG: saz:Sama_0067 signal transduction histidine kinase-like protein protein; histidine kinase complement(339691..342486) Shewanella sediminis HAW-EB3 5611524 YP_001472032.1 CDS Ssed_0291 NC_009831.1 342492 343454 R KEGG: slo:Shew_3789 ABC-type nitrate/sulfonate/bicarbonate transport system protein; ABC-type nitrate/sulfonate/bicarbonate transport system protein complement(342492..343454) Shewanella sediminis HAW-EB3 5611525 YP_001472033.1 CDS glnA NC_009831.1 343643 345052 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(343643..345052) Shewanella sediminis HAW-EB3 5611526 YP_001472034.1 CDS Ssed_0293 NC_009831.1 345432 347255 D KEGG: slo:Shew_3553 GTP-binding protein TypA; GTP-binding protein TypA 345432..347255 Shewanella sediminis HAW-EB3 5609853 YP_001472035.1 CDS Ssed_0294 NC_009831.1 347570 348784 R KEGG: slo:Shew_3549 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(347570..348784) Shewanella sediminis HAW-EB3 5609854 YP_001472036.1 CDS Ssed_0295 NC_009831.1 349069 349839 R KEGG: sat:SYN_00385 hypothetical protein; hypothetical protein complement(349069..349839) Shewanella sediminis HAW-EB3 5609855 YP_001472037.1 CDS Ssed_0296 NC_009831.1 350171 351406 R KEGG: mem:Memar_0422 major facilitator superfamily MFS_1; arabinose efflux permease-like protein complement(350171..351406) Shewanella sediminis HAW-EB3 5609748 YP_001472038.1 CDS Ssed_0297 NC_009831.1 351507 351845 R KEGG: sfr:Sfri_2586 flavocytochrome c; flavocytochrome c complement(351507..351845) Shewanella sediminis HAW-EB3 5609749 YP_001472039.1 CDS Ssed_0298 NC_009831.1 351912 353438 R KEGG: eca:ECA0910 flavoprotein subunit of a reductase; flavoprotein subunit of a reductase complement(351912..353438) Shewanella sediminis HAW-EB3 5609750 YP_001472040.1 CDS Ssed_0299 NC_009831.1 353807 355450 D KEGG: mxa:MXAN_5879 sigma-54 dependent transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 353807..355450 Shewanella sediminis HAW-EB3 5609751 YP_001472041.1 CDS Ssed_0300 NC_009831.1 355662 356309 R KEGG: sbl:Sbal_0313 hypothetical protein; hypothetical protein complement(355662..356309) Shewanella sediminis HAW-EB3 5610300 YP_001472042.1 CDS Ssed_0301 NC_009831.1 356351 356578 R KEGG: slo:Shew_3546 hypothetical protein; hypothetical protein complement(356351..356578) Shewanella sediminis HAW-EB3 5610301 YP_001472043.1 CDS rbn NC_009831.1 356728 357624 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 356728..357624 Shewanella sediminis HAW-EB3 5610302 YP_001472044.1 CDS Ssed_0303 NC_009831.1 357624 358577 D KEGG: slo:Shew_3544 alpha/beta hydrolase fold; alpha/beta hydrolase 357624..358577 Shewanella sediminis HAW-EB3 5609864 YP_001472045.1 CDS Ssed_0304 NC_009831.1 358574 359143 D KEGG: sbl:Sbal_0317 hypothetical protein; hypothetical protein 358574..359143 Shewanella sediminis HAW-EB3 5609865 YP_001472046.1 CDS Ssed_0305 NC_009831.1 359212 359649 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 359212..359649 Shewanella sediminis HAW-EB3 5609866 YP_001472047.1 CDS Ssed_0306 NC_009831.1 359652 360125 D KEGG: slo:Shew_3541 thioesterase domain; thioesterase domain-containing protein 359652..360125 Shewanella sediminis HAW-EB3 5609867 YP_001472048.1 CDS Ssed_0307 NC_009831.1 360318 360911 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 360318..360911 Shewanella sediminis HAW-EB3 5609999 YP_001472049.1 CDS Ssed_0308 NC_009831.1 361077 361397 R KEGG: sbl:Sbal_0322 rhodanese domain protein; rhodanese domain-containing protein complement(361077..361397) Shewanella sediminis HAW-EB3 5610000 YP_001472050.1 CDS Ssed_0309 NC_009831.1 361522 362268 R KEGG: shw:Sputw3181_0284 hypothetical protein; hypothetical protein complement(361522..362268) Shewanella sediminis HAW-EB3 5610001 YP_001472051.1 CDS Ssed_0310 NC_009831.1 362282 363529 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(362282..363529) Shewanella sediminis HAW-EB3 5610002 YP_001472052.1 CDS fabG NC_009831.1 363567 364292 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(363567..364292) Shewanella sediminis HAW-EB3 5610046 YP_001472053.1 CDS Ssed_0312 NC_009831.1 364299 364787 R KEGG: slo:Shew_3524 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ complement(364299..364787) Shewanella sediminis HAW-EB3 5610047 YP_001472054.1 CDS Ssed_0313 NC_009831.1 364784 365989 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(364784..365989) Shewanella sediminis HAW-EB3 5610048 YP_001472055.1 CDS Ssed_0314 NC_009831.1 366060 366692 R KEGG: slo:Shew_3522 hypothetical protein; hypothetical protein complement(366060..366692) Shewanella sediminis HAW-EB3 5609778 YP_001472056.1 CDS Ssed_0315 NC_009831.1 366721 367983 R KEGG: slo:Shew_3521 tryptophan halogenase; tryptophan halogenase complement(366721..367983) Shewanella sediminis HAW-EB3 5609779 YP_001472057.1 CDS Ssed_0316 NC_009831.1 367983 370397 R KEGG: shm:Shewmr7_3685 hypothetical protein; hypothetical protein complement(367983..370397) Shewanella sediminis HAW-EB3 5609780 YP_001472058.1 CDS Ssed_0317 NC_009831.1 370394 371197 R KEGG: shm:Shewmr7_3684 hypothetical protein; hypothetical protein complement(370394..371197) Shewanella sediminis HAW-EB3 5609781 YP_001472059.1 CDS Ssed_0318 NC_009831.1 371194 371673 R KEGG: slo:Shew_3518 thioesterase superfamily protein; thioesterase superfamily protein complement(371194..371673) Shewanella sediminis HAW-EB3 5609718 YP_001472060.1 CDS Ssed_0319 NC_009831.1 371673 373232 R KEGG: slo:Shew_3517 histidine ammonia-lyase; histidine ammonia-lyase complement(371673..373232) Shewanella sediminis HAW-EB3 5609719 YP_001472061.1 CDS Ssed_0320 NC_009831.1 373233 374936 R KEGG: slo:Shew_3516 glycosyl transferase, family 2; glycosyl transferase family protein complement(373233..374936) Shewanella sediminis HAW-EB3 5609720 YP_001472062.1 CDS Ssed_0321 NC_009831.1 374936 375313 R KEGG: shn:Shewana3_0337 thioester dehydrase family protein; thioester dehydrase family protein complement(374936..375313) Shewanella sediminis HAW-EB3 5609587 YP_001472063.1 CDS Ssed_0322 NC_009831.1 375306 376670 R KEGG: slo:Shew_3514 hypothetical protein; hypothetical protein complement(375306..376670) Shewanella sediminis HAW-EB3 5609588 YP_001472064.1 CDS Ssed_0323 NC_009831.1 376667 377215 R KEGG: slo:Shew_3513 hypothetical protein; hypothetical protein complement(376667..377215) Shewanella sediminis HAW-EB3 5609589 YP_001472065.1 CDS Ssed_0324 NC_009831.1 377215 377463 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(377215..377463) Shewanella sediminis HAW-EB3 5609590 YP_001472066.1 CDS Ssed_0325 NC_009831.1 377472 377726 R KEGG: shn:Shewana3_0344 acyl carrier protein; acyl carrier protein complement(377472..377726) Shewanella sediminis HAW-EB3 5610065 YP_001472067.1 CDS Ssed_0326 NC_009831.1 377730 378521 R KEGG: slo:Shew_3510 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(377730..378521) Shewanella sediminis HAW-EB3 5610066 YP_001472068.1 CDS Ssed_0327 NC_009831.1 378514 379230 R KEGG: son:SO4366 hypothetical protein; hypothetical protein complement(378514..379230) Shewanella sediminis HAW-EB3 5610067 YP_001472069.1 CDS Ssed_0328 NC_009831.1 379475 380344 R KEGG: slo:Shew_3508 hypothetical protein; hypothetical protein complement(379475..380344) Shewanella sediminis HAW-EB3 5610068 YP_001472070.1 CDS Ssed_0329 NC_009831.1 380531 382606 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(380531..382606) Shewanella sediminis HAW-EB3 5610025 YP_001472071.1 CDS Ssed_0330 NC_009831.1 382787 383719 R KEGG: sbl:Sbal_0350 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter complement(382787..383719) Shewanella sediminis HAW-EB3 5610026 YP_001472072.1 CDS Ssed_0331 NC_009831.1 383891 385558 R KEGG: slo:Shew_3502 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(383891..385558) Shewanella sediminis HAW-EB3 5610027 YP_001472073.1 CDS Ssed_0332 NC_009831.1 385804 386499 R specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase complement(385804..386499) Shewanella sediminis HAW-EB3 5609683 YP_001472074.1 CDS Ssed_0333 NC_009831.1 386567 386950 R KEGG: slo:Shew_3500 endoribonuclease L-PSP; endoribonuclease L-PSP complement(386567..386950) Shewanella sediminis HAW-EB3 5609684 YP_001472075.1 CDS Ssed_0334 NC_009831.1 387040 389145 R KEGG: slo:Shew_3499 (p)ppGpp synthetase I, SpoT/RelA; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase complement(387040..389145) Shewanella sediminis HAW-EB3 5609685 YP_001472076.1 CDS rpoZ NC_009831.1 389159 389443 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(389159..389443) Shewanella sediminis HAW-EB3 5609686 YP_001472077.1 CDS gmk NC_009831.1 389500 390123 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(389500..390123) Shewanella sediminis HAW-EB3 5610920 YP_001472078.1 CDS Ssed_0337 NC_009831.1 390490 391557 D KEGG: slo:Shew_3496 hypothetical protein; hypothetical protein 390490..391557 Shewanella sediminis HAW-EB3 5610921 YP_001472079.1 CDS Ssed_0338 NC_009831.1 391663 392631 D KEGG: shm:Shewmr7_0332 hypothetical protein; hypothetical protein 391663..392631 Shewanella sediminis HAW-EB3 5610922 YP_001472080.1 CDS Ssed_0339 NC_009831.1 392628 393704 D KEGG: shn:Shewana3_3807 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 392628..393704 Shewanella sediminis HAW-EB3 5611448 YP_001472081.1 CDS Ssed_0340 NC_009831.1 394139 395614 R KEGG: vvy:VVA1406 hypothetical protein; hypothetical protein complement(394139..395614) Shewanella sediminis HAW-EB3 5611449 YP_001472082.1 CDS Ssed_0341 NC_009831.1 395907 396092 D hypothetical protein 395907..396092 Shewanella sediminis HAW-EB3 5611450 YP_001472083.1 CDS Ssed_0342 NC_009831.1 396516 396896 R KEGG: slo:Shew_2279 tetraheme cytochrome c; tetraheme cytochrome c complement(396516..396896) Shewanella sediminis HAW-EB3 5611451 YP_001472084.1 CDS Ssed_0343 NC_009831.1 396941 398584 R KEGG: slo:Shew_2280 phenylalanine/histidine ammonia-lyase; phenylalanine/histidine ammonia-lyase complement(396941..398584) Shewanella sediminis HAW-EB3 5613894 YP_001472085.1 CDS Ssed_0344 NC_009831.1 398611 400170 R KEGG: son:SO3058 flavocytochrome c flavin subunit; flavocytochrome c flavin subunit complement(398611..400170) Shewanella sediminis HAW-EB3 5613895 YP_001472086.1 CDS Ssed_0345 NC_009831.1 400647 401804 R KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein complement(400647..401804) Shewanella sediminis HAW-EB3 5613896 YP_001472087.1 CDS Ssed_0346 NC_009831.1 402419 403975 D KEGG: son:SO3059 formate hydrogenlyase transcriptional activator; formate hydrogenlyase transcriptional activator 402419..403975 Shewanella sediminis HAW-EB3 5613897 YP_001472088.1 CDS Ssed_0347 NC_009831.1 403972 404430 R KEGG: sfr:Sfri_3125 hypothetical protein; hypothetical protein complement(403972..404430) Shewanella sediminis HAW-EB3 5610808 YP_001472089.1 CDS Ssed_0348 NC_009831.1 404461 405120 R KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(404461..405120) Shewanella sediminis HAW-EB3 5610809 YP_001472090.1 CDS Ssed_0349 NC_009831.1 405205 405840 R KEGG: sfr:Sfri_3127 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(405205..405840) Shewanella sediminis HAW-EB3 5610810 YP_001472091.1 CDS Ssed_0350 NC_009831.1 405853 408282 R KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; anaerobic dimethyl sulfoxide reductase subunit A complement(405853..408282) Shewanella sediminis HAW-EB3 5612886 YP_001472092.1 CDS Ssed_0351 NC_009831.1 408323 410329 R KEGG: sfr:Sfri_3129 outer membrane protein; outer membrane protein complement(408323..410329) Shewanella sediminis HAW-EB3 5612887 YP_001472093.1 CDS Ssed_0352 NC_009831.1 410345 411298 R KEGG: sfr:Sfri_3130 cytochrome c family protein; cytochrome c family protein complement(410345..411298) Shewanella sediminis HAW-EB3 5612888 YP_001472094.1 CDS Ssed_0353 NC_009831.1 412077 413807 R KEGG: psp:PSPPH_1251 oligopeptide transporter, OPT family; OPT family oligopeptide transporter complement(412077..413807) Shewanella sediminis HAW-EB3 5612889 YP_001472095.1 CDS Ssed_0354 NC_009831.1 414104 414796 D KEGG: slo:Shew_0277 transcriptional regulator, TetR family; hypothetical protein 414104..414796 Shewanella sediminis HAW-EB3 5612635 YP_001472096.1 CDS Ssed_0355 NC_009831.1 414994 415314 R hypothetical protein complement(414994..415314) Shewanella sediminis HAW-EB3 5612636 YP_001472097.1 CDS Ssed_0356 NC_009831.1 415350 415970 R KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(415350..415970) Shewanella sediminis HAW-EB3 5612637 YP_001472098.1 CDS Ssed_0357 NC_009831.1 416026 418128 R KEGG: son:SO4356 hypothetical protein; hypothetical protein complement(416026..418128) Shewanella sediminis HAW-EB3 5612638 YP_001472099.1 CDS Ssed_0358 NC_009831.1 418130 418747 R KEGG: vpa:VP1448 anaerobic dimethyl sulfoxide reductase, subunit B; anaerobic dimethyl sulfoxide reductase subunit B complement(418130..418747) Shewanella sediminis HAW-EB3 5613329 YP_001472100.1 CDS Ssed_0359 NC_009831.1 418758 421208 R KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; anaerobic dimethyl sulfoxide reductase subunit A complement(418758..421208) Shewanella sediminis HAW-EB3 5613330 YP_001472101.1 CDS Ssed_0360 NC_009831.1 421242 422939 R KEGG: sfr:Sfri_3685 outer membrane protein; hypothetical protein complement(421242..422939) Shewanella sediminis HAW-EB3 5613331 YP_001472102.1 CDS Ssed_0361 NC_009831.1 422949 423809 R KEGG: son:SO1777 decaheme cytochrome c MtrA; decaheme cytochrome c MtrA complement(422949..423809) Shewanella sediminis HAW-EB3 5612050 YP_001472103.1 CDS Ssed_0362 NC_009831.1 424401 425414 R KEGG: sfr:Sfri_3878 integrase, catalytic region; integrase, catalytic region complement(424401..425414) Shewanella sediminis HAW-EB3 5612051 YP_001472104.1 CDS Ssed_0363 NC_009831.1 425452 427050 R KEGG: sfr:Sfri_3879 sodium/sulphate symporter; sodium/sulfate symporter complement(425452..427050) Shewanella sediminis HAW-EB3 5612052 YP_001472105.1 CDS Ssed_0364 NC_009831.1 427389 428024 D KEGG: sfr:Sfri_3880 hypothetical protein; hypothetical protein 427389..428024 Shewanella sediminis HAW-EB3 5612053 YP_001472106.1 CDS Ssed_0365 NC_009831.1 428039 428509 D KEGG: sfr:Sfri_3881 adenylate cyclase; adenylate cyclase 428039..428509 Shewanella sediminis HAW-EB3 5613411 YP_001472107.1 CDS Ssed_0366 NC_009831.1 428526 429851 D KEGG: ppr:PBPRA2016 hypothetical protein; hypothetical protein 428526..429851 Shewanella sediminis HAW-EB3 5613412 YP_001472108.1 CDS Ssed_0367 NC_009831.1 430127 431479 D KEGG: sfr:Sfri_3882 phosphate-selective porin O and P; phosphate-selective porin O and P 430127..431479 Shewanella sediminis HAW-EB3 5613413 YP_001472109.1 CDS Ssed_0368 NC_009831.1 431489 432313 D KEGG: sfr:Sfri_3883 hypothetical protein; hypothetical protein 431489..432313 Shewanella sediminis HAW-EB3 5613268 YP_001472110.1 CDS Ssed_0369 NC_009831.1 432396 433064 D KEGG: sfr:Sfri_3884 protein of unknown function DUF47; hypothetical protein 432396..433064 Shewanella sediminis HAW-EB3 5613269 YP_001472111.1 CDS Ssed_0370 NC_009831.1 433077 434120 D KEGG: sfr:Sfri_3885 phosphate transporter; phosphate transporter 433077..434120 Shewanella sediminis HAW-EB3 5613270 YP_001472112.1 CDS Ssed_0371 NC_009831.1 435056 436882 D KEGG: sfr:Sfri_3883 hypothetical protein; hypothetical protein 435056..436882 Shewanella sediminis HAW-EB3 5613271 YP_001472113.1 CDS Ssed_0372 NC_009831.1 437011 438036 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 437011..438036 Shewanella sediminis HAW-EB3 5613032 YP_001472114.1 CDS Ssed_0373 NC_009831.1 438266 438928 D KEGG: slo:Shew_2230 adenylate kinase; adenylate kinase 438266..438928 Shewanella sediminis HAW-EB3 5613033 YP_001472115.1 CDS Ssed_0374 NC_009831.1 439043 439681 R KEGG: spc:Sputcn32_3619 ERCC4 domain protein; ERCC4 domain-containing protein complement(439043..439681) Shewanella sediminis HAW-EB3 5613034 YP_001472116.1 CDS Ssed_0375 NC_009831.1 439843 441147 R KEGG: she:Shewmr4_3395 HipA domain protein; HipA domain-containing protein complement(439843..441147) Shewanella sediminis HAW-EB3 5613035 YP_001472117.1 CDS Ssed_0376 NC_009831.1 441134 441382 R KEGG: slo:Shew_0478 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(441134..441382) Shewanella sediminis HAW-EB3 5613261 YP_001472118.1 CDS Ssed_0377 NC_009831.1 441797 442660 R KEGG: slo:Shew_3489 YicC N-terminal domain protein; hypothetical protein complement(441797..442660) Shewanella sediminis HAW-EB3 5613262 YP_001472119.1 CDS rph NC_009831.1 442841 443554 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 442841..443554 Shewanella sediminis HAW-EB3 5613263 YP_001472120.1 CDS pyrE NC_009831.1 443641 444282 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 443641..444282 Shewanella sediminis HAW-EB3 5612972 YP_001472121.1 CDS folE NC_009831.1 444582 445241 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(444582..445241) Shewanella sediminis HAW-EB3 5612973 YP_001472122.1 CDS Ssed_0381 NC_009831.1 445480 447444 R KEGG: slo:Shew_3485 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(445480..447444) Shewanella sediminis HAW-EB3 5612974 YP_001472123.1 CDS slmA NC_009831.1 447863 448456 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(447863..448456) Shewanella sediminis HAW-EB3 5612975 YP_001472124.1 CDS dut NC_009831.1 448601 449059 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(448601..449059) Shewanella sediminis HAW-EB3 5612711 YP_001472125.1 CDS Ssed_0384 NC_009831.1 449056 450258 R KEGG: slo:Shew_3482 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenoylcysteine decarboxylase, phosphopantothenate--cysteine ligase complement(449056..450258) Shewanella sediminis HAW-EB3 5612712 YP_001472126.1 CDS radC NC_009831.1 450403 451080 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 450403..451080 Shewanella sediminis HAW-EB3 5612713 YP_001472127.1 CDS rpmB NC_009831.1 451208 451444 D required for 70S ribosome assembly; 50S ribosomal protein L28 451208..451444 Shewanella sediminis HAW-EB3 5612747 YP_001472128.1 CDS rpmG NC_009831.1 451451 451624 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 451451..451624 Shewanella sediminis HAW-EB3 5612748 YP_001472129.1 CDS Ssed_0388 NC_009831.1 451913 453232 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 451913..453232 Shewanella sediminis HAW-EB3 5612749 YP_001472130.1 CDS Ssed_0389 NC_009831.1 453603 454499 R KEGG: son:SO4243 rarD protein; rarD protein complement(453603..454499) Shewanella sediminis HAW-EB3 5612750 YP_001472131.1 CDS Ssed_0390 NC_009831.1 454745 455209 R KEGG: shw:Sputw3181_0371 uncharacterized domain 1; hypothetical protein complement(454745..455209) Shewanella sediminis HAW-EB3 5612530 YP_001472132.1 CDS Ssed_0391 NC_009831.1 455509 457332 D KEGG: slo:Shew_3474 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 455509..457332 Shewanella sediminis HAW-EB3 5612531 YP_001472133.1 CDS Ssed_0392 NC_009831.1 457338 459089 R KEGG: slo:Shew_3473 response regulator receiver protein; response regulator receiver protein complement(457338..459089) Shewanella sediminis HAW-EB3 5612532 YP_001472134.1 CDS Ssed_0393 NC_009831.1 459605 461176 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 459605..461176 Shewanella sediminis HAW-EB3 5612533 YP_001472135.1 CDS Ssed_0394 NC_009831.1 461233 462327 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 461233..462327 Shewanella sediminis HAW-EB3 5612669 YP_001472136.1 CDS Ssed_0395 NC_009831.1 462332 463732 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 462332..463732 Shewanella sediminis HAW-EB3 5612670 YP_001472137.1 CDS leuD NC_009831.1 463746 464351 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 463746..464351 Shewanella sediminis HAW-EB3 5612671 YP_001472138.1 CDS Ssed_0397 NC_009831.1 464841 466178 D KEGG: son:SO4232 long-chain fatty acid transport protein; long-chain fatty acid transport protein 464841..466178 Shewanella sediminis HAW-EB3 5612392 YP_001472139.1 CDS Ssed_0398 NC_009831.1 466420 466917 D KEGG: slo:Shew_3467 hypothetical protein; hypothetical protein 466420..466917 Shewanella sediminis HAW-EB3 5612393 YP_001472140.1 CDS Ssed_0399 NC_009831.1 466976 468463 D KEGG: slo:Shew_3466 glycerol kinase; glycerol kinase 466976..468463 Shewanella sediminis HAW-EB3 5612394 YP_001472141.1 CDS Ssed_0400 NC_009831.1 468533 468835 R KEGG: slo:Shew_3465 hypothetical protein; hypothetical protein complement(468533..468835) Shewanella sediminis HAW-EB3 5612395 YP_001472142.1 CDS Ssed_0401 NC_009831.1 469277 469735 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 469277..469735 Shewanella sediminis HAW-EB3 5612161 YP_001472143.1 CDS mraW NC_009831.1 469763 470707 D KEGG: slo:Shew_3461 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 469763..470707 Shewanella sediminis HAW-EB3 5612162 YP_001472144.1 CDS Ssed_0403 NC_009831.1 470784 471098 D KEGG: slo:Shew_3460 cell division protein FtsL; cell division protein FtsL 470784..471098 Shewanella sediminis HAW-EB3 5612163 YP_001472145.1 CDS Ssed_0404 NC_009831.1 471175 472911 D KEGG: slo:Shew_3459 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 471175..472911 Shewanella sediminis HAW-EB3 5612164 YP_001472146.1 CDS murE NC_009831.1 472911 474392 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 472911..474392 Shewanella sediminis HAW-EB3 5612354 YP_001472147.1 CDS Ssed_0406 NC_009831.1 474389 475756 D KEGG: slo:Shew_3457 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase 474389..475756 Shewanella sediminis HAW-EB3 5612355 YP_001472148.1 CDS mraY NC_009831.1 475756 476838 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 475756..476838 Shewanella sediminis HAW-EB3 5612356 YP_001472149.1 CDS murD NC_009831.1 476911 478242 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 476911..478242 Shewanella sediminis HAW-EB3 5611428 YP_001472150.1 CDS Ssed_0409 NC_009831.1 478235 479467 D KEGG: slo:Shew_3454 cell division protein FtsW; cell division protein FtsW 478235..479467 Shewanella sediminis HAW-EB3 5611429 YP_001472151.1 CDS murG NC_009831.1 479448 480545 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 479448..480545 Shewanella sediminis HAW-EB3 5611430 YP_001472152.1 CDS murC NC_009831.1 480547 482016 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 480547..482016 Shewanella sediminis HAW-EB3 5611431 YP_001472153.1 CDS Ssed_0412 NC_009831.1 482148 482912 D KEGG: slo:Shew_3451 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 482148..482912 Shewanella sediminis HAW-EB3 5613654 YP_001472154.1 CDS Ssed_0413 NC_009831.1 482916 484151 D KEGG: slo:Shew_3450 cell division protein FtsA; cell division protein FtsA 482916..484151 Shewanella sediminis HAW-EB3 5613655 YP_001472155.1 CDS Ssed_0414 NC_009831.1 484228 485403 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 484228..485403 Shewanella sediminis HAW-EB3 5613656 YP_001472156.1 CDS lpxC NC_009831.1 485604 486524 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 485604..486524 Shewanella sediminis HAW-EB3 5611027 YP_001472157.1 CDS Ssed_0416 NC_009831.1 486566 487018 R KEGG: slo:Shew_3447 hypothetical protein; hypothetical protein complement(486566..487018) Shewanella sediminis HAW-EB3 5611028 YP_001472158.1 CDS Ssed_0417 NC_009831.1 487046 487945 D KEGG: slo:Shew_3446 peptidase M23B; peptidase M23B 487046..487945 Shewanella sediminis HAW-EB3 5611029 YP_001472159.1 CDS Ssed_0418 NC_009831.1 488005 490728 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 488005..490728 Shewanella sediminis HAW-EB3 5611030 YP_001472160.1 CDS Ssed_0419 NC_009831.1 512380 512769 R KEGG: slo:Shew_3444 mutator MutT protein; mutator MutT protein complement(512380..512769) Shewanella sediminis HAW-EB3 5611672 YP_001472161.1 CDS Ssed_0420 NC_009831.1 512773 512985 R KEGG: slo:Shew_3443 protein of unknown function DUF329; hypothetical protein complement(512773..512985) Shewanella sediminis HAW-EB3 5614109 YP_001472162.1 CDS Ssed_0421 NC_009831.1 513065 513799 R KEGG: slo:Shew_3442 protein of unknown function DUF1342; hypothetical protein complement(513065..513799) Shewanella sediminis HAW-EB3 5614110 YP_001472163.1 CDS coaE NC_009831.1 513808 514413 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(513808..514413) Shewanella sediminis HAW-EB3 5614111 YP_001472164.1 CDS Ssed_0423 NC_009831.1 514459 515370 R KEGG: shn:Shewana3_0417 peptidase A24A domain protein; prepilin peptidase complement(514459..515370) Shewanella sediminis HAW-EB3 5611220 YP_001472165.1 CDS Ssed_0424 NC_009831.1 515443 516708 R KEGG: slo:Shew_3439 type II secretion system protein; type II secretion system protein complement(515443..516708) Shewanella sediminis HAW-EB3 5611221 YP_001472166.1 CDS Ssed_0425 NC_009831.1 516774 518483 R KEGG: slo:Shew_3438 type IV-A pilus assembly ATPase PilB; type IV-A pilus assembly ATPase PilB complement(516774..518483) Shewanella sediminis HAW-EB3 5611222 YP_001472167.1 CDS Ssed_0426 NC_009831.1 518556 518966 R KEGG: sfr:Sfri_3782 methylation site containing protein; methylation site containing protein complement(518556..518966) Shewanella sediminis HAW-EB3 5613715 YP_001472168.1 CDS Ssed_0427 NC_009831.1 519719 520624 R KEGG: shw:Sputw3181_0522 nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide diphosphorylase complement(519719..520624) Shewanella sediminis HAW-EB3 5613716 YP_001472169.1 CDS Ssed_0428 NC_009831.1 520949 521566 D KEGG: slo:Shew_3434 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 520949..521566 Shewanella sediminis HAW-EB3 5613717 YP_001472170.1 CDS Ssed_0429 NC_009831.1 521706 522557 D involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 521706..522557 Shewanella sediminis HAW-EB3 5613718 YP_001472171.1 CDS pdhR NC_009831.1 522956 523708 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 522956..523708 Shewanella sediminis HAW-EB3 5610073 YP_001472172.1 CDS aceE NC_009831.1 523795 526461 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 523795..526461 Shewanella sediminis HAW-EB3 5610074 YP_001472173.1 CDS Ssed_0432 NC_009831.1 526474 528111 D KEGG: slo:Shew_3430 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; dihydrolipoyllysine-residue succinyltransferase 526474..528111 Shewanella sediminis HAW-EB3 5610075 YP_001472174.1 CDS Ssed_0433 NC_009831.1 528266 529693 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 528266..529693 Shewanella sediminis HAW-EB3 5611189 YP_001472175.1 CDS Ssed_0434 NC_009831.1 529824 534281 D KEGG: slo:Shew_3428 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 529824..534281 Shewanella sediminis HAW-EB3 5611190 YP_001472176.1 CDS Ssed_0435 NC_009831.1 534359 536614 D KEGG: slo:Shew_3427 patatin; patatin 534359..536614 Shewanella sediminis HAW-EB3 5611191 YP_001472177.1 CDS Ssed_0436 NC_009831.1 536775 538829 D KEGG: slo:Shew_3426 endothelin-converting enzyme 1; endothelin-converting protein 1 536775..538829 Shewanella sediminis HAW-EB3 5611192 YP_001472178.1 CDS Ssed_0437 NC_009831.1 539133 539798 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(539133..539798) Shewanella sediminis HAW-EB3 5611366 YP_001472179.1 CDS Ssed_0438 NC_009831.1 540214 542811 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 540214..542811 Shewanella sediminis HAW-EB3 5611367 YP_001472180.1 CDS Ssed_0439 NC_009831.1 542997 543464 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(542997..543464) Shewanella sediminis HAW-EB3 5611368 YP_001472181.1 CDS hemE NC_009831.1 543991 545055 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 543991..545055 Shewanella sediminis HAW-EB3 5611369 YP_001472182.1 CDS Ssed_0441 NC_009831.1 545598 548210 D KEGG: son:SO0437 sensory box protein; sensory box protein 545598..548210 Shewanella sediminis HAW-EB3 5613910 YP_001472183.1 CDS Ssed_0442 NC_009831.1 548378 551380 R KEGG: slo:Shew_3414 hypothetical protein; hypothetical protein complement(548378..551380) Shewanella sediminis HAW-EB3 5613911 YP_001472184.1 CDS Ssed_0443 NC_009831.1 551686 552978 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(551686..552978) Shewanella sediminis HAW-EB3 5613912 YP_001472185.1 CDS purH NC_009831.1 553060 554664 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(553060..554664) Shewanella sediminis HAW-EB3 5612542 YP_001472186.1 CDS zntR NC_009831.1 555335 555814 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 555335..555814 Shewanella sediminis HAW-EB3 5612543 YP_001472187.1 CDS Ssed_0446 NC_009831.1 555817 557118 D KEGG: slo:Shew_3410 permease; permease 555817..557118 Shewanella sediminis HAW-EB3 5612544 YP_001472188.1 CDS Ssed_0447 NC_009831.1 557633 559471 D KEGG: saz:Sama_2990 hypothetical protein; hypothetical protein 557633..559471 Shewanella sediminis HAW-EB3 5612545 YP_001472189.1 CDS Ssed_0448 NC_009831.1 559788 561824 D KEGG: pha:PSHAa1953 peptidase; peptidase 559788..561824 Shewanella sediminis HAW-EB3 5610379 YP_001472190.1 CDS Ssed_0449 NC_009831.1 561951 562967 R KEGG: slo:Shew_3409 lipoprotein; lipoprotein complement(561951..562967) Shewanella sediminis HAW-EB3 5610380 YP_001472191.1 CDS Ssed_0450 NC_009831.1 563331 564059 R KEGG: slo:Shew_3408 protein of unknown function DUF28; hypothetical protein complement(563331..564059) Shewanella sediminis HAW-EB3 5610381 YP_001472192.1 CDS Ssed_0451 NC_009831.1 564174 565103 R KEGG: sbl:Sbal_0481 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(564174..565103) Shewanella sediminis HAW-EB3 5610382 YP_001472193.1 CDS Ssed_0452 NC_009831.1 565201 566259 D KEGG: shm:Shewmr7_3509 secretion protein HlyD family protein; secretion protein HlyD family protein 565201..566259 Shewanella sediminis HAW-EB3 5612185 YP_001472194.1 CDS Ssed_0453 NC_009831.1 566263 567843 D KEGG: sbl:Sbal_0483 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 566263..567843 Shewanella sediminis HAW-EB3 5612186 YP_001472195.1 CDS Ssed_0454 NC_009831.1 567971 568426 D KEGG: slo:Shew_3397 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 567971..568426 Shewanella sediminis HAW-EB3 5612187 YP_001472196.1 CDS Ssed_0455 NC_009831.1 568499 568744 R KEGG: slo:Shew_3396 hypothetical protein; hypothetical protein complement(568499..568744) Shewanella sediminis HAW-EB3 5612046 YP_001472197.1 CDS Ssed_0456 NC_009831.1 569096 570025 D KEGG: shm:Shewmr7_3501 radical SAM domain protein; radical SAM domain-containing protein 569096..570025 Shewanella sediminis HAW-EB3 5612047 YP_001472198.1 CDS Ssed_0457 NC_009831.1 570088 570921 R KEGG: slo:Shew_3394 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(570088..570921) Shewanella sediminis HAW-EB3 5612048 YP_001472199.1 CDS Ssed_0458 NC_009831.1 571153 571617 D KEGG: shw:Sputw3181_3632 hypothetical protein; hypothetical protein 571153..571617 Shewanella sediminis HAW-EB3 5612049 YP_001472200.1 CDS Ssed_0459 NC_009831.1 571698 571919 R KEGG: slo:Shew_3391 protein of unknown function DUF465; hypothetical protein complement(571698..571919) Shewanella sediminis HAW-EB3 5612284 YP_001472201.1 CDS Ssed_0460 NC_009831.1 571921 572160 D hypothetical protein 571921..572160 Shewanella sediminis HAW-EB3 5612285 YP_001472202.1 CDS Ssed_0461 NC_009831.1 572328 573086 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 572328..573086 Shewanella sediminis HAW-EB3 5612286 YP_001472203.1 CDS Ssed_0462 NC_009831.1 573219 573971 R KEGG: slo:Shew_3389 hypothetical protein; hypothetical protein complement(573219..573971) Shewanella sediminis HAW-EB3 5612173 YP_001472204.1 CDS Ssed_0463 NC_009831.1 574310 574783 D KEGG: shw:Sputw3181_3627 protein of unknown function DUF107; hypothetical protein 574310..574783 Shewanella sediminis HAW-EB3 5612174 YP_001472205.1 CDS Ssed_0464 NC_009831.1 574914 575861 D KEGG: slo:Shew_3387 band 7 protein; hypothetical protein 574914..575861 Shewanella sediminis HAW-EB3 5612175 YP_001472206.1 CDS Ssed_0465 NC_009831.1 575858 576793 D KEGG: slo:Shew_3386 band 7 protein; hypothetical protein 575858..576793 Shewanella sediminis HAW-EB3 5612176 YP_001472207.1 CDS Ssed_0466 NC_009831.1 577508 577861 D KEGG: cps:CPS_4240 endoribonuclease, L-PSP family; L-PSP family endoribonuclease 577508..577861 Shewanella sediminis HAW-EB3 5612868 YP_001472208.1 CDS uvrD NC_009831.1 577962 580127 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 577962..580127 Shewanella sediminis HAW-EB3 5612869 YP_001472209.1 CDS ubiA NC_009831.1 580211 581071 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 580211..581071 Shewanella sediminis HAW-EB3 5612870 YP_001472210.1 CDS Ssed_0469 NC_009831.1 581370 582482 D KEGG: shn:Shewana3_0475 hypothetical protein; hypothetical protein 581370..582482 Shewanella sediminis HAW-EB3 5612871 YP_001472211.1 CDS Ssed_0470 NC_009831.1 582559 583368 R KEGG: har:HEAR2247 transposase; transposase complement(582559..583368) Shewanella sediminis HAW-EB3 5612335 YP_001472212.1 CDS Ssed_0471 NC_009831.1 583416 583730 R KEGG: mta:Moth_1610 transposase IS3/IS911; transposase IS3/IS911 complement(583416..583730) Shewanella sediminis HAW-EB3 5612336 YP_001472213.1 CDS Ssed_0472 NC_009831.1 584339 585871 D KEGG: sdn:Sden_3419 kap P-loop; hypothetical protein 584339..585871 Shewanella sediminis HAW-EB3 5612337 YP_001472214.1 CDS Ssed_0473 NC_009831.1 586226 586804 R KEGG: slo:Shew_0343 hypothetical protein; hypothetical protein complement(586226..586804) Shewanella sediminis HAW-EB3 5613016 YP_001472215.1 CDS Ssed_0474 NC_009831.1 586959 587186 R hypothetical protein complement(586959..587186) Shewanella sediminis HAW-EB3 5613017 YP_001472216.1 CDS Ssed_0475 NC_009831.1 587565 589082 D KEGG: slo:Shew_0344 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 587565..589082 Shewanella sediminis HAW-EB3 5613018 YP_001472217.1 CDS Ssed_0476 NC_009831.1 589131 591197 R KEGG: shn:Shewana3_0482 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(589131..591197) Shewanella sediminis HAW-EB3 5613019 YP_001472218.1 CDS Ssed_0477 NC_009831.1 591383 591898 D KEGG: shn:Shewana3_0483 hypothetical protein; hypothetical protein 591383..591898 Shewanella sediminis HAW-EB3 5612931 YP_001472219.1 CDS Ssed_0478 NC_009831.1 591917 592129 D KEGG: shn:Shewana3_0484 transcriptional regulator, XRE family; XRE family transcriptional regulator 591917..592129 Shewanella sediminis HAW-EB3 5612932 YP_001472220.1 CDS Ssed_0479 NC_009831.1 592264 592854 R KEGG: son:SO0476 thioredoxin; thioredoxin complement(592264..592854) Shewanella sediminis HAW-EB3 5612933 YP_001472221.1 CDS Ssed_0480 NC_009831.1 592835 593263 R KEGG: shw:Sputw3181_0575 cytochrome c biogenesis protein; cytochrome c biogenesis protein complement(592835..593263) Shewanella sediminis HAW-EB3 5613238 YP_001472222.1 CDS Ssed_0481 NC_009831.1 593260 595230 R KEGG: shw:Sputw3181_0576 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(593260..595230) Shewanella sediminis HAW-EB3 5613239 YP_001472223.1 CDS Ssed_0482 NC_009831.1 595777 597813 D KEGG: slo:Shew_0348 cytochrome c; cytochrome c 595777..597813 Shewanella sediminis HAW-EB3 5613240 YP_001472224.1 CDS Ssed_0483 NC_009831.1 597859 598314 D KEGG: shw:Sputw3181_0578 rhodanese domain protein; rhodanese domain-containing protein 597859..598314 Shewanella sediminis HAW-EB3 5613241 YP_001472225.1 CDS Ssed_0484 NC_009831.1 598369 599157 D KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 598369..599157 Shewanella sediminis HAW-EB3 5613354 YP_001472226.1 CDS Ssed_0485 NC_009831.1 599191 599898 D KEGG: shn:Shewana3_0492 formate-dependent nitrite reductase, NrfG protein; cytochrome c biogenesis factor-like protein 599191..599898 Shewanella sediminis HAW-EB3 5613355 YP_001472227.1 CDS Ssed_0486 NC_009831.1 599949 600653 D KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 599949..600653 Shewanella sediminis HAW-EB3 5613356 YP_001472228.1 CDS Ssed_0487 NC_009831.1 600656 601603 D KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 600656..601603 Shewanella sediminis HAW-EB3 5613357 YP_001472229.1 CDS Ssed_0488 NC_009831.1 601920 602420 D KEGG: she:Shewmr4_0494 NosL family protein; NosL family protein 601920..602420 Shewanella sediminis HAW-EB3 5613348 YP_001472230.1 CDS Ssed_0489 NC_009831.1 602567 603799 D KEGG: shw:Sputw3181_0582 periplasmic copper-binding; copper-binding protein 602567..603799 Shewanella sediminis HAW-EB3 5613349 YP_001472231.1 CDS Ssed_0490 NC_009831.1 603793 604701 D KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 603793..604701 Shewanella sediminis HAW-EB3 5613350 YP_001472232.1 CDS Ssed_0491 NC_009831.1 604714 605553 D KEGG: slo:Shew_0357 copper ABC transporter, permease; copper ABC transporter permease 604714..605553 Shewanella sediminis HAW-EB3 5613843 YP_001472233.1 CDS Ssed_0492 NC_009831.1 605844 607127 D KEGG: shw:Sputw3181_0585 transcriptional regulator, CadC; transcriptional regulator CadC 605844..607127 Shewanella sediminis HAW-EB3 5613844 YP_001472234.1 CDS Ssed_0493 NC_009831.1 607731 609761 D KEGG: slo:Shew_0348 cytochrome c; cytochrome c 607731..609761 Shewanella sediminis HAW-EB3 5613845 YP_001472235.1 CDS Ssed_0494 NC_009831.1 609839 610267 D KEGG: son:SO0480 hypothetical protein; hypothetical protein 609839..610267 Shewanella sediminis HAW-EB3 5613846 YP_001472236.1 CDS Ssed_0495 NC_009831.1 610330 611121 D KEGG: slo:Shew_0350 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 610330..611121 Shewanella sediminis HAW-EB3 5613314 YP_001472237.1 CDS Ssed_0496 NC_009831.1 611182 611904 D KEGG: slo:Shew_0351 tetratricopeptide TPR_2 repeat protein; hypothetical protein 611182..611904 Shewanella sediminis HAW-EB3 5613315 YP_001472238.1 CDS Ssed_0497 NC_009831.1 611968 612678 D KEGG: she:Shewmr4_0492 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 611968..612678 Shewanella sediminis HAW-EB3 5613316 YP_001472239.1 CDS Ssed_0498 NC_009831.1 612681 613628 D KEGG: slo:Shew_0353 polysulphide reductase, NrfD; polysulfide reductase NrfD 612681..613628 Shewanella sediminis HAW-EB3 5613317 YP_001472240.1 CDS Ssed_0499 NC_009831.1 613800 614288 D KEGG: son:SO0485 NosL protein; NosL protein 613800..614288 Shewanella sediminis HAW-EB3 5613691 YP_001472241.1 CDS Ssed_0500 NC_009831.1 614295 615584 D KEGG: shw:Sputw3181_0582 periplasmic copper-binding; periplasmic copper-binding protein 614295..615584 Shewanella sediminis HAW-EB3 5613692 YP_001472242.1 CDS Ssed_0501 NC_009831.1 615611 616513 D KEGG: slo:Shew_0356 ABC transporter-related protein; ABC transporter-like protein 615611..616513 Shewanella sediminis HAW-EB3 5613693 YP_001472243.1 CDS Ssed_0502 NC_009831.1 616515 617345 D KEGG: slo:Shew_0357 copper ABC transporter, permease; copper ABC transporter permease 616515..617345 Shewanella sediminis HAW-EB3 5613917 YP_001472244.1 CDS Ssed_0503 NC_009831.1 617625 618908 D KEGG: shn:Shewana3_0499 transcriptional regulator, CadC; transcriptional regulator CadC 617625..618908 Shewanella sediminis HAW-EB3 5613918 YP_001472245.1 CDS fre NC_009831.1 619041 619751 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(619041..619751) Shewanella sediminis HAW-EB3 5613919 YP_001472246.1 CDS Ssed_0505 NC_009831.1 619832 621313 R KEGG: slo:Shew_0360 UbiD family decarboxylase; UbiD family decarboxylase complement(619832..621313) Shewanella sediminis HAW-EB3 5613920 YP_001472247.1 CDS Ssed_0506 NC_009831.1 621781 622272 D KEGG: slo:Shew_0361 hypothetical protein; hypothetical protein 621781..622272 Shewanella sediminis HAW-EB3 5614120 YP_001472248.1 CDS Ssed_0507 NC_009831.1 622689 622946 D KEGG: son:SO_A0050 toxin secretion, membrane fusion protein; toxin secretion, membrane fusion protein 622689..622946 Shewanella sediminis HAW-EB3 5614121 YP_001472249.1 CDS Ssed_0508 NC_009831.1 623989 624969 D KEGG: sbl:Sbal_3194 CheW protein; chemotaxis protein CheW 623989..624969 Shewanella sediminis HAW-EB3 5614122 YP_001472250.1 CDS Ssed_0509 NC_009831.1 625017 625547 R KEGG: sfr:Sfri_3606 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(625017..625547) Shewanella sediminis HAW-EB3 5612301 YP_001472251.1 CDS Ssed_0510 NC_009831.1 626137 626637 R KEGG: cps:CPS_2140 lipoprotein; lipoprotein complement(626137..626637) Shewanella sediminis HAW-EB3 5612302 YP_001472252.1 CDS Ssed_0511 NC_009831.1 627002 628204 D KEGG: ppr:PBPRA2465 tyrosine-specific transport protein; tyrosine-specific transport protein 627002..628204 Shewanella sediminis HAW-EB3 5612303 YP_001472253.1 CDS Ssed_0512 NC_009831.1 629048 629992 D KEGG: saz:Sama_2899 transcriptional regulator-like protein; transcriptional regulator-like protein 629048..629992 Shewanella sediminis HAW-EB3 5611642 YP_001472254.1 CDS Ssed_0513 NC_009831.1 630551 631477 D KEGG: slo:Shew_0759 cytochrome c; cytochrome c 630551..631477 Shewanella sediminis HAW-EB3 5613876 YP_001472255.1 CDS Ssed_0514 NC_009831.1 631488 632033 D KEGG: shm:Shewmr7_3242 hypothetical protein; hypothetical protein 631488..632033 Shewanella sediminis HAW-EB3 5613877 YP_001472256.1 CDS Ssed_0515 NC_009831.1 633107 633397 R KEGG: shw:Sputw3181_2184 hypothetical protein; hypothetical protein complement(633107..633397) Shewanella sediminis HAW-EB3 5613878 YP_001472257.1 CDS Ssed_0516 NC_009831.1 633420 634361 R KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; formate-dependent nitrite reductase complex subunit NrfD complement(633420..634361) Shewanella sediminis HAW-EB3 5613879 YP_001472258.1 CDS Ssed_0517 NC_009831.1 634358 635047 R KEGG: shw:Sputw3181_3894 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(634358..635047) Shewanella sediminis HAW-EB3 5614162 YP_001472259.1 CDS Ssed_0518 NC_009831.1 635060 635530 R KEGG: slo:Shew_3156 hypothetical protein; hypothetical protein complement(635060..635530) Shewanella sediminis HAW-EB3 5614163 YP_001472260.1 CDS Ssed_0519 NC_009831.1 635613 636107 R KEGG: slo:Shew_3155 hypothetical protein; hypothetical protein complement(635613..636107) Shewanella sediminis HAW-EB3 5614164 YP_001472261.1 CDS Ssed_0520 NC_009831.1 636590 637555 D KEGG: shn:Shewana3_3964 transcriptional regulator, LysR family; LysR family transcriptional regulator 636590..637555 Shewanella sediminis HAW-EB3 5613751 YP_001472262.1 CDS Ssed_0521 NC_009831.1 637776 638084 R KEGG: slo:Shew_0372 hypothetical protein; hypothetical protein complement(637776..638084) Shewanella sediminis HAW-EB3 5613752 YP_001472263.1 CDS Ssed_0523 NC_009831.1 638859 639029 D KEGG: pha:PSHAa1073 hypothetical protein; hypothetical protein 638859..639029 Shewanella sediminis HAW-EB3 5613753 YP_001472264.1 CDS Ssed_0524 NC_009831.1 639199 640302 R KEGG: vfi:VF0872 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(639199..640302) Shewanella sediminis HAW-EB3 5613754 YP_001472265.1 CDS Ssed_0525 NC_009831.1 640603 641556 D KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase 640603..641556 Shewanella sediminis HAW-EB3 5613981 YP_001472266.1 CDS Ssed_0526 NC_009831.1 641660 642463 R KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family; hypothetical protein complement(641660..642463) Shewanella sediminis HAW-EB3 5613982 YP_001472267.1 CDS Ssed_0527 NC_009831.1 642520 644379 R hypothetical protein complement(642520..644379) Shewanella sediminis HAW-EB3 5613983 YP_001472268.1 CDS Ssed_0528 NC_009831.1 644770 645162 R KEGG: slo:Shew_0373 protein of unknown function DUF971; hypothetical protein complement(644770..645162) Shewanella sediminis HAW-EB3 5613211 YP_001472269.1 CDS Ssed_0529 NC_009831.1 645332 647365 R KEGG: ppr:PBPRB1868 hypothetical chemotaxis transducer; methyl-accepting chemotaxis protein-like protein complement(645332..647365) Shewanella sediminis HAW-EB3 5613212 YP_001472270.1 CDS hslU NC_009831.1 647610 648935 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(647610..648935) Shewanella sediminis HAW-EB3 5613213 YP_001472271.1 CDS Ssed_0531 NC_009831.1 649009 649533 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(649009..649533) Shewanella sediminis HAW-EB3 5613214 YP_001472272.1 CDS Ssed_0532 NC_009831.1 649764 650330 R KEGG: slo:Shew_0377 sporulation domain protein; sporulation domain-containing protein complement(649764..650330) Shewanella sediminis HAW-EB3 5613784 YP_001472273.1 CDS argS NC_009831.1 650433 652178 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(650433..652178) Shewanella sediminis HAW-EB3 5613785 YP_001472274.1 CDS Ssed_0534 NC_009831.1 652346 654574 R KEGG: slo:Shew_0379 primosomal protein N'; primosomal protein N' complement(652346..654574) Shewanella sediminis HAW-EB3 5613786 YP_001472275.1 CDS Ssed_0535 NC_009831.1 654629 655435 D KEGG: slo:Shew_0380 hypothetical protein; hypothetical protein 654629..655435 Shewanella sediminis HAW-EB3 5613787 YP_001472276.1 CDS rpmE NC_009831.1 655695 655907 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 655695..655907 Shewanella sediminis HAW-EB3 5613680 YP_001472277.1 CDS Ssed_0537 NC_009831.1 656060 656920 D KEGG: slo:Shew_0382 nuclease (SNase domain protein); nuclease 656060..656920 Shewanella sediminis HAW-EB3 5613681 YP_001472278.1 CDS Ssed_0538 NC_009831.1 657089 658336 D KEGG: slo:Shew_0383 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); malate dehydrogenase 657089..658336 Shewanella sediminis HAW-EB3 5613682 YP_001472279.1 CDS Ssed_0539 NC_009831.1 658641 660551 D regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 658641..660551 Shewanella sediminis HAW-EB3 5612501 YP_001472280.1 CDS Ssed_0540 NC_009831.1 660903 661817 D KEGG: sbl:Sbal_3839 conserved hypothetical biogenesis protein MshI; biogenesis protein MshI 660903..661817 Shewanella sediminis HAW-EB3 5612502 YP_001472281.1 CDS Ssed_0541 NC_009831.1 661814 662425 D KEGG: slo:Shew_0386 fimbrial assembly family protein; fimbrial assembly family protein 661814..662425 Shewanella sediminis HAW-EB3 5612503 YP_001472282.1 CDS Ssed_0542 NC_009831.1 662422 663072 D KEGG: slo:Shew_0387 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ 662422..663072 Shewanella sediminis HAW-EB3 5612504 YP_001472283.1 CDS Ssed_0543 NC_009831.1 663059 663409 D KEGG: she:Shewmr4_3487 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK 663059..663409 Shewanella sediminis HAW-EB3 5610593 YP_001472284.1 CDS Ssed_0544 NC_009831.1 663406 665109 D KEGG: slo:Shew_0389 pilus (MSHA type) biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL 663406..665109 Shewanella sediminis HAW-EB3 5610594 YP_001472285.1 CDS Ssed_0545 NC_009831.1 665113 666021 D KEGG: sbl:Sbal_3834 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM 665113..666021 Shewanella sediminis HAW-EB3 5610595 YP_001472286.1 CDS Ssed_0546 NC_009831.1 666018 667259 D KEGG: slo:Shew_0391 tetratricopeptide TPR_2 repeat protein; hypothetical protein 666018..667259 Shewanella sediminis HAW-EB3 5610596 YP_001472287.1 CDS Ssed_0547 NC_009831.1 667256 669010 D KEGG: shm:Shewmr7_0469 type II secretion system protein E; type II secretion system protein E 667256..669010 Shewanella sediminis HAW-EB3 5611179 YP_001472288.1 CDS Ssed_0548 NC_009831.1 669099 670319 D KEGG: shn:Shewana3_3659 type II secretion system protein; type II secretion system protein 669099..670319 Shewanella sediminis HAW-EB3 5611180 YP_001472289.1 CDS Ssed_0549 NC_009831.1 670354 670875 D KEGG: slo:Shew_0394 hypothetical protein; hypothetical protein 670354..670875 Shewanella sediminis HAW-EB3 5611181 YP_001472290.1 CDS Ssed_0550 NC_009831.1 670947 671603 D KEGG: slo:Shew_0395 methylation site containing protein; methylation site containing protein 670947..671603 Shewanella sediminis HAW-EB3 5610253 YP_001472291.1 CDS Ssed_0551 NC_009831.1 671696 672217 D KEGG: saz:Sama_0461 MSHA pilin protein MshA; MSHA pilin protein MshA 671696..672217 Shewanella sediminis HAW-EB3 5610254 YP_001472292.1 CDS Ssed_0552 NC_009831.1 672263 672742 D KEGG: saz:Sama_0461 MSHA pilin protein MshA; MSHA pilin protein MshA 672263..672742 Shewanella sediminis HAW-EB3 5610255 YP_001472293.1 CDS Ssed_0553 NC_009831.1 672951 673418 D KEGG: shw:Sputw3181_3603 MSHA pilin protein MshC; MSHA pilin protein MshC 672951..673418 Shewanella sediminis HAW-EB3 5610256 YP_001472294.1 CDS Ssed_0554 NC_009831.1 673408 674004 D KEGG: slo:Shew_0399 methylation site containing protein; methylation site containing protein 673408..674004 Shewanella sediminis HAW-EB3 5614064 YP_001472295.1 CDS Ssed_0555 NC_009831.1 674004 674813 D KEGG: slo:Shew_0400 methylation site containing protein; methylation site containing protein 674004..674813 Shewanella sediminis HAW-EB3 5614065 YP_001472296.1 CDS Ssed_0556 NC_009831.1 674803 675288 D KEGG: sfr:Sfri_3740 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP 674803..675288 Shewanella sediminis HAW-EB3 5614066 YP_001472297.1 CDS Ssed_0557 NC_009831.1 675290 678010 D KEGG: slo:Shew_0402 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ 675290..678010 Shewanella sediminis HAW-EB3 5614080 YP_001472298.1 CDS Ssed_0558 NC_009831.1 678219 679268 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 678219..679268 Shewanella sediminis HAW-EB3 5614081 YP_001472299.1 CDS Ssed_0559 NC_009831.1 679407 680303 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 679407..680303 Shewanella sediminis HAW-EB3 5614082 YP_001472300.1 CDS Ssed_0560 NC_009831.1 680300 680788 D KEGG: slo:Shew_0405 rod shape-determining protein MreD; rod shape-determining protein MreD 680300..680788 Shewanella sediminis HAW-EB3 5614083 YP_001472301.1 CDS Ssed_0561 NC_009831.1 680791 681387 D KEGG: slo:Shew_0406 maf protein; maf protein 680791..681387 Shewanella sediminis HAW-EB3 5610407 YP_001472302.1 CDS Ssed_0562 NC_009831.1 681497 682999 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 681497..682999 Shewanella sediminis HAW-EB3 5610408 YP_001472303.1 CDS Ssed_0563 NC_009831.1 682999 687258 D KEGG: slo:Shew_0408 hypothetical protein; hypothetical protein 682999..687258 Shewanella sediminis HAW-EB3 5610409 YP_001472304.1 CDS Ssed_0564 NC_009831.1 687182 688027 D KEGG: sbl:Sbal_3816 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 687182..688027 Shewanella sediminis HAW-EB3 5610410 YP_001472305.1 CDS Ssed_0565 NC_009831.1 688086 689558 D KEGG: slo:Shew_0410 peptidase U62, modulator of DNA gyrase; C69 family peptidase 688086..689558 Shewanella sediminis HAW-EB3 5612469 YP_001472306.1 CDS Ssed_0566 NC_009831.1 689688 691109 D KEGG: slo:Shew_0411 outer membrane efflux protein; outer membrane efflux protein 689688..691109 Shewanella sediminis HAW-EB3 5612470 YP_001472307.1 CDS Ssed_0567 NC_009831.1 691099 692070 D KEGG: slo:Shew_0412 secretion protein HlyD family protein; secretion protein HlyD family protein 691099..692070 Shewanella sediminis HAW-EB3 5612471 YP_001472308.1 CDS Ssed_0568 NC_009831.1 692089 693252 D KEGG: slo:Shew_0413 ABC-2 type transporter; ABC transporter 692089..693252 Shewanella sediminis HAW-EB3 5609814 YP_001472309.1 CDS Ssed_0569 NC_009831.1 693249 694397 D KEGG: she:Shewmr4_3461 ABC-2 type transporter; ABC transporter 693249..694397 Shewanella sediminis HAW-EB3 5609815 YP_001472310.1 CDS Ssed_0570 NC_009831.1 694715 697270 R KEGG: sbl:Sbal_3807 Ig domain protein, group 1 domain protein; Ig domain-containing protein complement(694715..697270) Shewanella sediminis HAW-EB3 5609816 YP_001472311.1 CDS Ssed_0571 NC_009831.1 697353 697892 R KEGG: slo:Shew_0415 protein of unknown function DUF615; hypothetical protein complement(697353..697892) Shewanella sediminis HAW-EB3 5609817 YP_001472312.1 CDS Ssed_0572 NC_009831.1 698124 699464 D KEGG: slo:Shew_0416 peptidase U62, modulator of DNA gyrase; C69 family peptidase 698124..699464 Shewanella sediminis HAW-EB3 5609611 YP_001472313.1 CDS Ssed_0573 NC_009831.1 699606 700106 D KEGG: slo:Shew_0364 MshA, mannose-sensitive haemaglutinin; mannose-sensitive hemagglutinin MshA 699606..700106 Shewanella sediminis HAW-EB3 5609612 YP_001472314.1 CDS Ssed_0574 NC_009831.1 700340 700684 D KEGG: slo:Shew_0417 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 700340..700684 Shewanella sediminis HAW-EB3 5609613 YP_001472315.1 CDS Ssed_0575 NC_009831.1 700791 701840 D KEGG: slo:Shew_0418 arsenical-resistance protein; arsenical-resistance protein 700791..701840 Shewanella sediminis HAW-EB3 5609972 YP_001472316.1 CDS Ssed_0576 NC_009831.1 701844 702905 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 701844..702905 Shewanella sediminis HAW-EB3 5609973 YP_001472317.1 CDS Ssed_0577 NC_009831.1 703016 704257 D KEGG: slo:Shew_0420 major facilitator superfamily MFS_1; major facilitator superfamily transporter 703016..704257 Shewanella sediminis HAW-EB3 5609974 YP_001472318.1 CDS Ssed_0578 NC_009831.1 705085 705303 D KEGG: sdn:Sden_1874 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 705085..705303 Shewanella sediminis HAW-EB3 5609975 YP_001472319.1 CDS Ssed_0579 NC_009831.1 705321 706250 R KEGG: vpa:VP2406 LysR-like regular protein; LysR-like regular protein complement(705321..706250) Shewanella sediminis HAW-EB3 5610182 YP_001472320.1 CDS Ssed_0580 NC_009831.1 706356 707492 D KEGG: vpa:VP2407 chromate resistance protein-related protein; chromate resistance protein-related protein 706356..707492 Shewanella sediminis HAW-EB3 5610183 YP_001472321.1 CDS Ssed_0581 NC_009831.1 707643 709520 R KEGG: sdn:Sden_2587 GGDEF domain; diguanylate cyclase complement(707643..709520) Shewanella sediminis HAW-EB3 5610184 YP_001472322.1 CDS Ssed_0582 NC_009831.1 709771 710268 D KEGG: sdn:Sden_1874 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 709771..710268 Shewanella sediminis HAW-EB3 5609965 YP_001472323.1 CDS Ssed_0583 NC_009831.1 711267 711389 D KEGG: shm:Shewmr7_3567 hypothetical protein; hypothetical protein 711267..711389 Shewanella sediminis HAW-EB3 5609966 YP_001472324.1 CDS Ssed_0584 NC_009831.1 712221 713600 D KEGG: slo:Shew_0424 amino acid carrier protein; amino acid carrier protein 712221..713600 Shewanella sediminis HAW-EB3 5609967 YP_001472325.1 CDS Ssed_0585 NC_009831.1 713851 714966 R KEGG: slo:Shew_0425 ABC-2 type transporter; ABC transporter complement(713851..714966) Shewanella sediminis HAW-EB3 5609968 YP_001472326.1 CDS Ssed_0586 NC_009831.1 714968 715951 R KEGG: slo:Shew_0426 ABC transporter-related protein; ABC transporter-like protein complement(714968..715951) Shewanella sediminis HAW-EB3 5610128 YP_001472327.1 CDS Ssed_0587 NC_009831.1 715948 716892 R KEGG: slo:Shew_0427 hypothetical protein; hypothetical protein complement(715948..716892) Shewanella sediminis HAW-EB3 5610129 YP_001472328.1 CDS Ssed_0588 NC_009831.1 717378 718286 D hypothetical protein 717378..718286 Shewanella sediminis HAW-EB3 5610130 YP_001472329.1 CDS Ssed_0589 NC_009831.1 718427 719533 D KEGG: cbo:CBO0434 membrane protein; hypothetical protein 718427..719533 Shewanella sediminis HAW-EB3 5609782 YP_001472330.1 CDS Ssed_0590 NC_009831.1 719671 720528 D KEGG: vfi:VFA0898 hypothetical protein; hypothetical protein 719671..720528 Shewanella sediminis HAW-EB3 5609783 YP_001472331.1 CDS Ssed_0591 NC_009831.1 720630 721193 D KEGG: sbl:Sbal_2970 hypothetical protein; hypothetical protein 720630..721193 Shewanella sediminis HAW-EB3 5609784 YP_001472332.1 CDS Ssed_0592 NC_009831.1 721346 722806 D KEGG: ppr:PBPRA1115 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 721346..722806 Shewanella sediminis HAW-EB3 5609785 YP_001472333.1 CDS Ssed_0593 NC_009831.1 723065 724111 R KEGG: pau:PA14_24920 transcriptional regulator; transcriptional regulator complement(723065..724111) Shewanella sediminis HAW-EB3 5610335 YP_001472334.1 CDS Ssed_0594 NC_009831.1 724186 725883 D KEGG: maq:Maqu_1346 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 724186..725883 Shewanella sediminis HAW-EB3 5610336 YP_001472335.1 CDS Ssed_0595 NC_009831.1 725880 727535 D KEGG: maq:Maqu_1345 FAD dependent oxidoreductase; FAD dependent oxidoreductase 725880..727535 Shewanella sediminis HAW-EB3 5610337 YP_001472336.1 CDS Ssed_0596 NC_009831.1 727532 729097 D KEGG: hch:HCH_04623 sugar (pentulose and hexulose) kinase; sugar (pentulose and hexulose) kinase 727532..729097 Shewanella sediminis HAW-EB3 5610155 YP_001472337.1 CDS Ssed_0597 NC_009831.1 729208 729483 D hypothetical protein 729208..729483 Shewanella sediminis HAW-EB3 5610156 YP_001472338.1 CDS Ssed_0598 NC_009831.1 729602 729775 R KEGG: slo:Shew_0428 hypothetical protein; hypothetical protein complement(729602..729775) Shewanella sediminis HAW-EB3 5610157 YP_001472339.1 CDS Ssed_0599 NC_009831.1 730228 730920 R KEGG: slo:Shew_0429 hypothetical protein; hypothetical protein complement(730228..730920) Shewanella sediminis HAW-EB3 5610158 YP_001472340.1 CDS Ssed_0600 NC_009831.1 731198 731470 R KEGG: slo:Shew_0430 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(731198..731470) Shewanella sediminis HAW-EB3 5609898 YP_001472341.1 CDS Ssed_0601 NC_009831.1 731730 732527 R KEGG: shw:Sputw3181_0617 response regulator receiver protein; response regulator receiver protein complement(731730..732527) Shewanella sediminis HAW-EB3 5609899 YP_001472342.1 CDS Ssed_0602 NC_009831.1 732625 733017 R KEGG: slo:Shew_0431 hypothetical protein; hypothetical protein complement(732625..733017) Shewanella sediminis HAW-EB3 5609900 YP_001472343.1 CDS Ssed_0603 NC_009831.1 733132 733641 D KEGG: slo:Shew_0432 hypothetical protein; hypothetical protein 733132..733641 Shewanella sediminis HAW-EB3 5609921 YP_001472344.1 CDS Ssed_0604 NC_009831.1 733711 734022 R KEGG: slo:Shew_0433 hypothetical protein; hypothetical protein complement(733711..734022) Shewanella sediminis HAW-EB3 5609922 YP_001472345.1 CDS Ssed_0605 NC_009831.1 734473 734754 R hypothetical protein complement(734473..734754) Shewanella sediminis HAW-EB3 5609923 YP_001472346.1 CDS Ssed_0606 NC_009831.1 734933 735238 R KEGG: slo:Shew_0434 hypothetical protein; hypothetical protein complement(734933..735238) Shewanella sediminis HAW-EB3 5609924 YP_001472347.1 CDS Ssed_0607 NC_009831.1 735656 736180 D KEGG: sbl:Sbal_0513 hypothetical protein; hypothetical protein 735656..736180 Shewanella sediminis HAW-EB3 5612574 YP_001472348.1 CDS Ssed_0608 NC_009831.1 736345 736656 R KEGG: slo:Shew_0437 hypothetical protein; hypothetical protein complement(736345..736656) Shewanella sediminis HAW-EB3 5612575 YP_001472349.1 CDS Ssed_0609 NC_009831.1 736712 737593 D KEGG: slo:Shew_0438 GumN family protein; GumN family protein 736712..737593 Shewanella sediminis HAW-EB3 5612576 YP_001472350.1 CDS Ssed_0610 NC_009831.1 737723 738352 D stimulates methylation of MCP proteins; KEGG: slo:Shew_0439 CheD, stimulates methylation of MCP proteins; hypothetical protein 737723..738352 Shewanella sediminis HAW-EB3 5613124 YP_001472351.1 CDS Ssed_0611 NC_009831.1 738591 739457 D KEGG: sbl:Sbal_0518 MaoC domain protein dehydratase; dehydratase 738591..739457 Shewanella sediminis HAW-EB3 5613125 YP_001472352.1 CDS Ssed_0612 NC_009831.1 739740 741452 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 739740..741452 Shewanella sediminis HAW-EB3 5613126 YP_001472353.1 CDS Ssed_0613 NC_009831.1 741683 743326 R KEGG: slo:Shew_0444 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(741683..743326) Shewanella sediminis HAW-EB3 5613127 YP_001472354.1 CDS Ssed_0614 NC_009831.1 743520 743855 D KEGG: slo:Shew_0445 hypothetical protein; hypothetical protein 743520..743855 Shewanella sediminis HAW-EB3 5610035 YP_001472355.1 CDS Ssed_0615 NC_009831.1 744417 744704 D KEGG: sbl:Sbal_0525 hypothetical protein; hypothetical protein 744417..744704 Shewanella sediminis HAW-EB3 5610036 YP_001472356.1 CDS Ssed_0616 NC_009831.1 744827 746014 D KEGG: shn:Shewana3_0565 hypothetical protein; hypothetical protein 744827..746014 Shewanella sediminis HAW-EB3 5610037 YP_001472357.1 CDS Ssed_0617 NC_009831.1 745998 746912 D KEGG: sbl:Sbal_0527 periplasmic solute binding protein; periplasmic solute binding protein 745998..746912 Shewanella sediminis HAW-EB3 5612086 YP_001472358.1 CDS Ssed_0618 NC_009831.1 746967 747827 D KEGG: sbl:Sbal_0528 ABC-3 protein; ABC-3 protein 746967..747827 Shewanella sediminis HAW-EB3 5612087 YP_001472359.1 CDS Ssed_0619 NC_009831.1 748056 748778 D KEGG: slo:Shew_0450 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acylglycerol-3-phosphate O-acyltransferase 748056..748778 Shewanella sediminis HAW-EB3 5612088 YP_001472360.1 CDS Ssed_0620 NC_009831.1 748876 749304 D KEGG: sfr:Sfri_3513 protein of unknown function DUF1260; hypothetical protein 748876..749304 Shewanella sediminis HAW-EB3 5612089 YP_001472361.1 CDS Ssed_0621 NC_009831.1 749405 750376 R KEGG: slo:Shew_0452 diguanylate cyclase; diguanylate cyclase complement(749405..750376) Shewanella sediminis HAW-EB3 5610232 YP_001472362.1 CDS Ssed_0622 NC_009831.1 750391 751386 R KEGG: slo:Shew_0453 response regulator receiver protein; response regulator receiver protein complement(750391..751386) Shewanella sediminis HAW-EB3 5610233 YP_001472363.1 CDS Ssed_0623 NC_009831.1 751797 752633 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 751797..752633 Shewanella sediminis HAW-EB3 5610234 YP_001472364.1 CDS Ssed_0624 NC_009831.1 752949 753830 R KEGG: slo:Shew_0456 hypothetical protein; hypothetical protein complement(752949..753830) Shewanella sediminis HAW-EB3 5613036 YP_001472365.1 CDS Ssed_0625 NC_009831.1 753945 756851 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(753945..756851) Shewanella sediminis HAW-EB3 5613037 YP_001472366.1 CDS Ssed_0626 NC_009831.1 757397 758791 D KEGG: slo:Shew_0458 PhoH family protein; PhoH family protein 757397..758791 Shewanella sediminis HAW-EB3 5613038 YP_001472367.1 CDS Ssed_0627 NC_009831.1 759500 763102 D KEGG: slo:Shew_0459 PAS/PAC sensor hybrid histidine kinase; histidine kinase 759500..763102 Shewanella sediminis HAW-EB3 5613039 YP_001472368.1 CDS Ssed_0628 NC_009831.1 763415 765820 D KEGG: slo:Shew_0460 hypothetical protein; hypothetical protein 763415..765820 Shewanella sediminis HAW-EB3 5609989 YP_001472369.1 CDS Ssed_0629 NC_009831.1 766234 769320 R KEGG: slo:Shew_0466 acriflavin resistance protein; acriflavin resistance protein complement(766234..769320) Shewanella sediminis HAW-EB3 5609990 YP_001472370.1 CDS Ssed_0630 NC_009831.1 769654 770748 R KEGG: slo:Shew_0467 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(769654..770748) Shewanella sediminis HAW-EB3 5609991 YP_001472371.1 CDS Ssed_0631 NC_009831.1 770994 771941 D KEGG: slo:Shew_0468 transcriptional regulator, LysR family; carbonate dehydratase 770994..771941 Shewanella sediminis HAW-EB3 5610845 YP_001472372.1 CDS Ssed_0632 NC_009831.1 772074 772619 R KEGG: cps:CPS_3286 DNA-binding protein; DNA-binding protein complement(772074..772619) Shewanella sediminis HAW-EB3 5610846 YP_001472373.1 CDS Ssed_0633 NC_009831.1 772869 773036 D KEGG: cps:CPS_3287 hypothetical protein; hypothetical protein 772869..773036 Shewanella sediminis HAW-EB3 5610847 YP_001472374.1 CDS Ssed_0634 NC_009831.1 773256 773678 D hypothetical protein 773256..773678 Shewanella sediminis HAW-EB3 5610848 YP_001472375.1 CDS Ssed_0635 NC_009831.1 773868 774170 D KEGG: slo:Shew_0462 hypothetical protein; hypothetical protein 773868..774170 Shewanella sediminis HAW-EB3 5611848 YP_001472376.1 CDS Ssed_0636 NC_009831.1 774472 774825 R KEGG: slo:Shew_0463 hypothetical protein; hypothetical protein complement(774472..774825) Shewanella sediminis HAW-EB3 5611849 YP_001472377.1 CDS Ssed_0637 NC_009831.1 774917 775411 R KEGG: slo:Shew_0464 hypothetical protein; hypothetical protein complement(774917..775411) Shewanella sediminis HAW-EB3 5611850 YP_001472378.1 CDS Ssed_0638 NC_009831.1 775637 776035 R KEGG: slo:Shew_0465 hypothetical protein; hypothetical protein complement(775637..776035) Shewanella sediminis HAW-EB3 5613755 YP_001472379.1 CDS Ssed_0639 NC_009831.1 776276 776932 R KEGG: ppr:PBPRB0125 hypothetical protein; hypothetical protein complement(776276..776932) Shewanella sediminis HAW-EB3 5613756 YP_001472380.1 CDS Ssed_0640 NC_009831.1 776993 778357 R KEGG: slo:Shew_0470 MATE efflux family protein; MATE efflux family protein complement(776993..778357) Shewanella sediminis HAW-EB3 5613757 YP_001472381.1 CDS groES NC_009831.1 778589 778879 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 778589..778879 Shewanella sediminis HAW-EB3 5613758 YP_001472382.1 CDS groEL NC_009831.1 778963 780612 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 778963..780612 Shewanella sediminis HAW-EB3 5613544 YP_001472383.1 CDS Ssed_0643 NC_009831.1 781024 783369 R KEGG: shw:Sputw3181_1203 ATPase, possibly involved in inorganic ion transport; ATPase complement(781024..783369) Shewanella sediminis HAW-EB3 5613545 YP_001472384.1 CDS Ssed_0644 NC_009831.1 783434 784201 R KEGG: pca:Pcar_1347 transposase InsF for insertion sequence IS3A/B/C/D/E/fA; transposase InsF for insertion sequence IS3A/B/C/D/E/fA complement(783434..784201) Shewanella sediminis HAW-EB3 5613546 YP_001472385.1 CDS Ssed_0645 NC_009831.1 784291 784584 R KEGG: psa:PST_3402 ISxac3 transposase; ISxac3 transposase complement(784291..784584) Shewanella sediminis HAW-EB3 5613735 YP_001472386.1 CDS Ssed_0646 NC_009831.1 784628 784855 R KEGG: shw:Sputw3181_1203 ATPase, possibly involved in inorganic ion transport; ATPase complement(784628..784855) Shewanella sediminis HAW-EB3 5613736 YP_001472387.1 CDS Ssed_0647 NC_009831.1 784917 785570 R KEGG: sfr:Sfri_3647 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(784917..785570) Shewanella sediminis HAW-EB3 5613737 YP_001472388.1 CDS Ssed_0648 NC_009831.1 785914 787092 D KEGG: spc:Sputcn32_1267 AAA ATPase, central domain protein; ATPase central domain-containing protein 785914..787092 Shewanella sediminis HAW-EB3 5613738 YP_001472389.1 CDS Ssed_0649 NC_009831.1 787553 788209 D KEGG: ppr:PBPRB0957 hypothetical protein; hypothetical protein 787553..788209 Shewanella sediminis HAW-EB3 5613254 YP_001472390.1 CDS Ssed_0650 NC_009831.1 788533 789171 D KEGG: sdn:Sden_0897 hypothetical protein; hypothetical protein 788533..789171 Shewanella sediminis HAW-EB3 5613255 YP_001472391.1 CDS Ssed_0651 NC_009831.1 789408 792611 D KEGG: slo:Shew_3366 metal dependent phosphohydrolase; metal dependent phosphohydrolase 789408..792611 Shewanella sediminis HAW-EB3 5613256 YP_001472392.1 CDS Ssed_0652 NC_009831.1 793053 793304 R hypothetical protein complement(793053..793304) Shewanella sediminis HAW-EB3 5613457 YP_001472393.1 CDS Ssed_0653 NC_009831.1 793451 794290 R KEGG: tde:TDE0675 hypothetical protein; hypothetical protein complement(793451..794290) Shewanella sediminis HAW-EB3 5613458 YP_001472394.1 CDS Ssed_0654 NC_009831.1 794301 795107 R KEGG: tde:TDE0674 hypothetical protein; hypothetical protein complement(794301..795107) Shewanella sediminis HAW-EB3 5613459 YP_001472395.1 CDS Ssed_0655 NC_009831.1 795270 796106 R KEGG: swi:Swit_3244 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(795270..796106) Shewanella sediminis HAW-EB3 5613460 YP_001472396.1 CDS Ssed_0656 NC_009831.1 796208 797113 R KEGG: swi:Swit_3244 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(796208..797113) Shewanella sediminis HAW-EB3 5613197 YP_001472397.1 CDS Ssed_0657 NC_009831.1 797161 797769 R KEGG: asa:ASA_3393 short-chain dehydrogenase/reductase; short chain dehydrogenase complement(797161..797769) Shewanella sediminis HAW-EB3 5613198 YP_001472398.1 CDS Ssed_0658 NC_009831.1 797868 798773 D KEGG: aha:AHA_0900 transcriptional regulator, LysR family; LysR family transcriptional regulator 797868..798773 Shewanella sediminis HAW-EB3 5613199 YP_001472399.1 CDS Ssed_0659 NC_009831.1 799099 799503 D KEGG: slo:Shew_0481 hypothetical protein; hypothetical protein 799099..799503 Shewanella sediminis HAW-EB3 5612950 YP_001472400.1 CDS Ssed_0660 NC_009831.1 799872 801038 D KEGG: slo:Shew_0482 hypothetical protein; hypothetical protein 799872..801038 Shewanella sediminis HAW-EB3 5612951 YP_001472401.1 CDS Ssed_0661 NC_009831.1 801041 801862 D KEGG: sfr:Sfri_2137 hypothetical protein; hypothetical protein 801041..801862 Shewanella sediminis HAW-EB3 5612952 YP_001472402.1 CDS Ssed_0662 NC_009831.1 801920 802207 R KEGG: sfr:Sfri_3652 hypothetical protein; hypothetical protein complement(801920..802207) Shewanella sediminis HAW-EB3 5612953 YP_001472403.1 CDS Ssed_0663 NC_009831.1 802516 804519 R KEGG: rme:Rmet_5402 beta-lactamase-like protein; beta-lactamase-like protein complement(802516..804519) Shewanella sediminis HAW-EB3 5613117 YP_001472404.1 CDS Ssed_0664 NC_009831.1 804844 806475 R KEGG: pat:Patl_1052 periplasmic sensor signal transduction histidine kinase; Signal transduction histidine kinase-like protein complement(804844..806475) Shewanella sediminis HAW-EB3 5613118 YP_001472405.1 CDS Ssed_0666 NC_009831.1 807005 807337 D KEGG: cac:CAC2107 contains cell adhesion domain; hypothetical protein 807005..807337 Shewanella sediminis HAW-EB3 5613119 YP_001472406.1 CDS Ssed_0667 NC_009831.1 807334 808557 D hypothetical protein 807334..808557 Shewanella sediminis HAW-EB3 5612938 YP_001472407.1 CDS Ssed_0668 NC_009831.1 809009 810172 R KEGG: ppr:PBPRB1046 hypothetical MFS transporter; MFS transporter complement(809009..810172) Shewanella sediminis HAW-EB3 5612939 YP_001472408.1 CDS Ssed_0669 NC_009831.1 810236 810403 R KEGG: vvy:VVA1599 dehydrogenase; dehydrogenase complement(810236..810403) Shewanella sediminis HAW-EB3 5612940 YP_001472409.1 CDS Ssed_0670 NC_009831.1 810677 811615 D KEGG: ppr:PBPRB1044 transcriptional regulator, LysR family; LysR family transcriptional regulator 810677..811615 Shewanella sediminis HAW-EB3 5612941 YP_001472410.1 CDS Ssed_0671 NC_009831.1 811748 812926 R KEGG: rrs:RoseRS_2460 NAD/NADP octopine/nopaline dehydrogenase; hypothetical protein complement(811748..812926) Shewanella sediminis HAW-EB3 5612523 YP_001472411.1 CDS Ssed_0672 NC_009831.1 813276 813983 R KEGG: sdn:Sden_1130 NADH dehydrogenase with NAD(P)-binding domain; NADH dehydrogenase complement(813276..813983) Shewanella sediminis HAW-EB3 5612524 YP_001472412.1 CDS Ssed_0673 NC_009831.1 814260 814511 R KEGG: slo:Shew_0491 hypothetical protein; hypothetical protein complement(814260..814511) Shewanella sediminis HAW-EB3 5612525 YP_001472413.1 CDS Ssed_0674 NC_009831.1 814742 815125 D KEGG: pat:Patl_2878 hypothetical protein; hypothetical protein 814742..815125 Shewanella sediminis HAW-EB3 5612824 YP_001472414.1 CDS Ssed_0675 NC_009831.1 815282 815836 R KEGG: son:SO3974 hypothetical protein; hypothetical protein complement(815282..815836) Shewanella sediminis HAW-EB3 5612825 YP_001472415.1 CDS Ssed_0676 NC_009831.1 816689 817777 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 816689..817777 Shewanella sediminis HAW-EB3 5612826 YP_001472416.1 CDS Ssed_0677 NC_009831.1 817848 818732 R KEGG: vpa:VPA0175 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(817848..818732) Shewanella sediminis HAW-EB3 5612827 YP_001472417.1 CDS Ssed_0678 NC_009831.1 818868 819392 D KEGG: saz:Sama_0275 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 818868..819392 Shewanella sediminis HAW-EB3 5612458 YP_001472418.1 CDS Ssed_0679 NC_009831.1 819464 820942 R KEGG: slo:Shew_0699 Na+/H+ antiporter; Na+/H+ antiporter complement(819464..820942) Shewanella sediminis HAW-EB3 5612459 YP_001472419.1 CDS Ssed_0680 NC_009831.1 821265 821756 D KEGG: sfr:Sfri_3604 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 821265..821756 Shewanella sediminis HAW-EB3 5612460 YP_001472420.1 CDS Ssed_0681 NC_009831.1 821871 822764 R KEGG: saz:Sama_2893 phospholipase A(1); phospholipase A(1) complement(821871..822764) Shewanella sediminis HAW-EB3 5612509 YP_001472421.1 CDS Ssed_0682 NC_009831.1 823041 823940 R KEGG: slo:Shew_3337 protein of unknown function DUF6, transmembrane; hypothetical protein complement(823041..823940) Shewanella sediminis HAW-EB3 5612510 YP_001472422.1 CDS Ssed_0683 NC_009831.1 824164 824667 D KEGG: sfr:Sfri_3643 transcriptional regulator, MarR family protein; MarR family transcriptional regulator 824164..824667 Shewanella sediminis HAW-EB3 5612511 YP_001472423.1 CDS Ssed_0684 NC_009831.1 824831 825226 D KEGG: gsu:GSU1286 chemotaxis protein CheY; chemotaxis protein CheY 824831..825226 Shewanella sediminis HAW-EB3 5612512 YP_001472424.1 CDS Ssed_0685 NC_009831.1 825385 826449 D KEGG: spc:Sputcn32_0144 hypothetical protein; hypothetical protein 825385..826449 Shewanella sediminis HAW-EB3 5612439 YP_001472425.1 CDS Ssed_0686 NC_009831.1 826650 827111 D KEGG: slo:Shew_0296 heat shock protein HSP20; heat shock protein Hsp20 826650..827111 Shewanella sediminis HAW-EB3 5612440 YP_001472426.1 CDS Ssed_0687 NC_009831.1 827789 829000 D KEGG: slo:Shew_0504 NnrS family protein; NnrS family protein 827789..829000 Shewanella sediminis HAW-EB3 5612441 YP_001472427.1 CDS Ssed_0688 NC_009831.1 829072 830466 D KEGG: slo:Shew_0505 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase 829072..830466 Shewanella sediminis HAW-EB3 5612265 YP_001472428.1 CDS Ssed_0689 NC_009831.1 830658 831827 R KEGG: pha:PSHAa1259 transport protein of the major facilitator; transport protein of the major facilitator complement(830658..831827) Shewanella sediminis HAW-EB3 5612266 YP_001472429.1 CDS Ssed_0690 NC_009831.1 832686 833444 D KEGG: son:SO4624 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 832686..833444 Shewanella sediminis HAW-EB3 5612267 YP_001472430.1 CDS Ssed_0691 NC_009831.1 833448 834122 D KEGG: spc:Sputcn32_3798 two component transcriptional regulator, winged helix family; two component transcriptional regulator 833448..834122 Shewanella sediminis HAW-EB3 5612268 YP_001472431.1 CDS Ssed_0692 NC_009831.1 834112 835326 D KEGG: shn:Shewana3_4006 histidine kinase A domain protein domain protein; histidine kinase A domain-containing protein 834112..835326 Shewanella sediminis HAW-EB3 5612407 YP_001472432.1 CDS Ssed_0693 NC_009831.1 835800 836546 D KEGG: son:SO4621 hypothetical protein; hypothetical protein 835800..836546 Shewanella sediminis HAW-EB3 5612408 YP_001472433.1 CDS Ssed_0694 NC_009831.1 836576 838330 D KEGG: son:SO4620 fumarate reductase, flavoprotein subunit precursor; fumarate reductase, flavoprotein subunit 836576..838330 Shewanella sediminis HAW-EB3 5612409 YP_001472434.1 CDS Ssed_0695 NC_009831.1 838408 839421 D KEGG: sdn:Sden_0988 ApbE-like lipoprotein; ApbE-like lipoprotein 838408..839421 Shewanella sediminis HAW-EB3 5612209 YP_001472435.1 CDS Ssed_0696 NC_009831.1 839661 839984 R hypothetical protein complement(839661..839984) Shewanella sediminis HAW-EB3 5612210 YP_001472436.1 CDS Ssed_0697 NC_009831.1 840563 841399 D KEGG: dvl:Dvul_0589 phosphate binding protein; phosphate binding protein 840563..841399 Shewanella sediminis HAW-EB3 5612211 YP_001472437.1 CDS Ssed_0698 NC_009831.1 841446 842324 D KEGG: lip:LI1029 phosphate transporter permease PstC; phosphate transporter permease PstC 841446..842324 Shewanella sediminis HAW-EB3 5612212 YP_001472438.1 CDS Ssed_0699 NC_009831.1 842321 843217 D KEGG: dvl:Dvul_0591 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 842321..843217 Shewanella sediminis HAW-EB3 5612244 YP_001472439.1 CDS Ssed_0700 NC_009831.1 843211 843936 D KEGG: sfu:Sfum_0283 ABC transporter related; ABC transporter 843211..843936 Shewanella sediminis HAW-EB3 5612245 YP_001472440.1 CDS Ssed_0701 NC_009831.1 844287 845324 D KEGG: pmy:Pmen_4369 helix-turn-helix-domain containing protein, AraC type; helix-turn-helix-domain-containing protein 844287..845324 Shewanella sediminis HAW-EB3 5612246 YP_001472441.1 CDS Ssed_0702 NC_009831.1 845421 847442 D KEGG: pfo:Pfl_2280 beta-lactamase-like; beta-lactamase-like protein 845421..847442 Shewanella sediminis HAW-EB3 5612205 YP_001472442.1 CDS fumC NC_009831.1 847686 849062 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 847686..849062 Shewanella sediminis HAW-EB3 5612206 YP_001472443.1 CDS Ssed_0704 NC_009831.1 849115 850206 R KEGG: sbl:Sbal_2332 hypothetical protein; hypothetical protein complement(849115..850206) Shewanella sediminis HAW-EB3 5612207 YP_001472444.1 CDS Ssed_0705 NC_009831.1 850305 850883 D KEGG: slo:Shew_3323 lipase-like; lipase-like protein 850305..850883 Shewanella sediminis HAW-EB3 5612208 YP_001472445.1 CDS Ssed_0706 NC_009831.1 850989 851918 R KEGG: slo:Shew_3322 RarD protein, DMT superfamily transporter; transporter DMT superfamily protein complement(850989..851918) Shewanella sediminis HAW-EB3 5612071 YP_001472446.1 CDS Ssed_0707 NC_009831.1 852274 853815 D KEGG: cps:CPS_0069 FG-GAP repeat lipoprotein; FG-GAP repeat-containing protein 852274..853815 Shewanella sediminis HAW-EB3 5612072 YP_001472447.1 CDS Ssed_0708 NC_009831.1 854106 855473 D KEGG: sfr:Sfri_3720 hypothetical protein; hypothetical protein 854106..855473 Shewanella sediminis HAW-EB3 5612073 YP_001472448.1 CDS Ssed_0709 NC_009831.1 855530 856495 R KEGG: ppr:PBPRA0683 hypothetical protein; hypothetical protein complement(855530..856495) Shewanella sediminis HAW-EB3 5611969 YP_001472449.1 CDS Ssed_0710 NC_009831.1 856652 857467 D KEGG: vpa:VP1267 lipoprotein; hypothetical protein 856652..857467 Shewanella sediminis HAW-EB3 5611970 YP_001472450.1 CDS Ssed_0711 NC_009831.1 857531 858799 R KEGG: slo:Shew_3318 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(857531..858799) Shewanella sediminis HAW-EB3 5611971 YP_001472451.1 CDS Ssed_0712 NC_009831.1 858799 859485 R KEGG: slo:Shew_3317 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(858799..859485) Shewanella sediminis HAW-EB3 5611972 YP_001472452.1 CDS Ssed_0713 NC_009831.1 859613 860644 D KEGG: ppr:PBPRB0750 hypothetical glycosyl transferase; glycosyl transferase family protein 859613..860644 Shewanella sediminis HAW-EB3 5611999 YP_001472453.1 CDS Ssed_0714 NC_009831.1 860641 862035 D KEGG: ppr:PBPRB0751 hypothetical protein; hypothetical protein 860641..862035 Shewanella sediminis HAW-EB3 5612000 YP_001472454.1 CDS Ssed_0715 NC_009831.1 862023 862451 D KEGG: cps:CPS_1862 hypothetical protein; hypothetical protein 862023..862451 Shewanella sediminis HAW-EB3 5612001 YP_001472455.1 CDS Ssed_0716 NC_009831.1 862607 863287 D KEGG: slo:Shew_0908 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 862607..863287 Shewanella sediminis HAW-EB3 5611877 YP_001472456.1 CDS Ssed_0717 NC_009831.1 864406 864840 D hypothetical protein 864406..864840 Shewanella sediminis HAW-EB3 5611878 YP_001472457.1 CDS Ssed_0718 NC_009831.1 864928 865251 D KEGG: ana:all3436 hypothetical protein; hypothetical protein 864928..865251 Shewanella sediminis HAW-EB3 5611879 YP_001472458.1 CDS Ssed_0719 NC_009831.1 865305 865781 D hypothetical protein 865305..865781 Shewanella sediminis HAW-EB3 5611880 YP_001472459.1 CDS Ssed_0720 NC_009831.1 866179 866586 D KEGG: sde:Sde_3085 response regulator receiver domain protein (CheY-like); hypothetical protein 866179..866586 Shewanella sediminis HAW-EB3 5611962 YP_001472460.1 CDS Ssed_0721 NC_009831.1 867061 868425 R KEGG: slo:Shew_3316 magnesium transporter; magnesium transporter complement(867061..868425) Shewanella sediminis HAW-EB3 5611963 YP_001472461.1 CDS Ssed_0722 NC_009831.1 868538 868813 R KEGG: son:SO3965 phosphocarrier protein NPR; phosphocarrier protein NPR complement(868538..868813) Shewanella sediminis HAW-EB3 5611964 YP_001472462.1 CDS Ssed_0723 NC_009831.1 868806 869654 R KEGG: slo:Shew_3314 uncharacterized P-loop ATPase UPF0042; hypothetical protein complement(868806..869654) Shewanella sediminis HAW-EB3 5611799 YP_001472463.1 CDS Ssed_0724 NC_009831.1 869651 870094 R KEGG: slo:Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(869651..870094) Shewanella sediminis HAW-EB3 5611800 YP_001472464.1 CDS Ssed_0725 NC_009831.1 870097 870384 R KEGG: slo:Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(870097..870384) Shewanella sediminis HAW-EB3 5611801 YP_001472465.1 CDS Ssed_0726 NC_009831.1 870451 871944 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(870451..871944) Shewanella sediminis HAW-EB3 5611802 YP_001472466.1 CDS Ssed_0727 NC_009831.1 872085 872816 R KEGG: slo:Shew_3310 ABC transporter-related protein; ABC transporter-like protein complement(872085..872816) Shewanella sediminis HAW-EB3 5611771 YP_001472467.1 CDS Ssed_0728 NC_009831.1 872813 873466 R KEGG: slo:Shew_3309 OstA family protein; OstA family protein complement(872813..873466) Shewanella sediminis HAW-EB3 5611772 YP_001472468.1 CDS Ssed_0729 NC_009831.1 873453 874010 R KEGG: slo:Shew_3308 protein of unknown function DUF1239; hypothetical protein complement(873453..874010) Shewanella sediminis HAW-EB3 5611773 YP_001472469.1 CDS Ssed_0730 NC_009831.1 874007 874558 R forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(874007..874558) Shewanella sediminis HAW-EB3 5611673 YP_001472470.1 CDS Ssed_0731 NC_009831.1 874646 875623 R KEGG: slo:Shew_3306 KpsF/GutQ family protein; arabinose-5-phosphate isomerase complement(874646..875623) Shewanella sediminis HAW-EB3 5611674 YP_001472471.1 CDS Ssed_0732 NC_009831.1 875663 876622 R KEGG: slo:Shew_3305 Na+/Ca+ antiporter, CaCA family; CaCA family Na(+)/Ca(+) antiporter complement(875663..876622) Shewanella sediminis HAW-EB3 5611675 YP_001472472.1 CDS Ssed_0733 NC_009831.1 876900 877703 D KEGG: slo:Shew_3304 ABC transporter-related protein; ABC transporter-like protein 876900..877703 Shewanella sediminis HAW-EB3 5611676 YP_001472473.1 CDS Ssed_0734 NC_009831.1 877768 878550 D KEGG: slo:Shew_3303 protein of unknown function DUF140; hypothetical protein 877768..878550 Shewanella sediminis HAW-EB3 5610999 YP_001472474.1 CDS Ssed_0735 NC_009831.1 878607 879077 D KEGG: slo:Shew_3302 mammalian cell entry related domain protein; hypothetical protein 878607..879077 Shewanella sediminis HAW-EB3 5611000 YP_001472475.1 CDS Ssed_0736 NC_009831.1 879081 879743 D KEGG: shw:Sputw3181_3449 toluene tolerance family protein; toluene tolerance family protein 879081..879743 Shewanella sediminis HAW-EB3 5611001 YP_001472476.1 CDS Ssed_0737 NC_009831.1 879744 880046 D KEGG: shw:Sputw3181_3448 SpoIIAA family protein; SpoIIAA family protein 879744..880046 Shewanella sediminis HAW-EB3 5611683 YP_001472477.1 CDS Ssed_0738 NC_009831.1 880051 880341 D KEGG: slo:Shew_3299 BolA family protein; BolA family protein 880051..880341 Shewanella sediminis HAW-EB3 5611684 YP_001472478.1 CDS Ssed_0739 NC_009831.1 880355 881614 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 880355..881614 Shewanella sediminis HAW-EB3 5611685 YP_001472479.1 CDS Ssed_0740 NC_009831.1 881831 883243 D KEGG: chy:CHY_1856 sensor histidine kinase; Signal transduction histidine kinase-like protein 881831..883243 Shewanella sediminis HAW-EB3 5611686 YP_001472480.1 CDS Ssed_0741 NC_009831.1 883418 884050 D KEGG: mgm:Mmc1_3443 response regulator receiver protein; response regulator receiver protein 883418..884050 Shewanella sediminis HAW-EB3 5611006 YP_001472481.1 CDS Ssed_0742 NC_009831.1 884247 885938 D KEGG: sus:Acid_7220 cytochrome c family protein; hypothetical protein 884247..885938 Shewanella sediminis HAW-EB3 5611007 YP_001472482.1 CDS Ssed_0743 NC_009831.1 886579 887664 R KEGG: slo:Shew_3297 periplasmic serine protease DegS; 2-alkenal reductase complement(886579..887664) Shewanella sediminis HAW-EB3 5611008 YP_001472483.1 CDS Ssed_0744 NC_009831.1 887802 889154 R KEGG: slo:Shew_3296 protease Do; 2-alkenal reductase complement(887802..889154) Shewanella sediminis HAW-EB3 5613246 YP_001472484.1 CDS Ssed_0745 NC_009831.1 889308 889682 R hypothetical protein complement(889308..889682) Shewanella sediminis HAW-EB3 5613247 YP_001472485.1 CDS Ssed_0746 NC_009831.1 889873 890979 D KEGG: slo:Shew_3295 AFG1-family ATPase; AFG1 family ATPase 889873..890979 Shewanella sediminis HAW-EB3 5613248 YP_001472486.1 CDS rplM NC_009831.1 891234 891665 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 891234..891665 Shewanella sediminis HAW-EB3 5613249 YP_001472487.1 CDS rpsI NC_009831.1 891680 892072 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 891680..892072 Shewanella sediminis HAW-EB3 5611186 YP_001472488.1 CDS Ssed_0749 NC_009831.1 892237 892407 D KEGG: slo:Shew_3292 hypothetical protein; hypothetical protein 892237..892407 Shewanella sediminis HAW-EB3 5611187 YP_001472489.1 CDS Ssed_0750 NC_009831.1 892474 893769 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 892474..893769 Shewanella sediminis HAW-EB3 5611188 YP_001472490.1 CDS Ssed_0751 NC_009831.1 893925 894608 D KEGG: slo:Shew_3290 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 893925..894608 Shewanella sediminis HAW-EB3 5611050 YP_001472491.1 CDS Ssed_0752 NC_009831.1 894661 897162 D KEGG: slo:Shew_3289 ribonuclease R; exoribonuclease II 894661..897162 Shewanella sediminis HAW-EB3 5611051 YP_001472492.1 CDS Ssed_0753 NC_009831.1 897159 897899 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 897159..897899 Shewanella sediminis HAW-EB3 5611052 YP_001472493.1 CDS Ssed_0754 NC_009831.1 898493 900385 D hypothetical protein 898493..900385 Shewanella sediminis HAW-EB3 5611053 YP_001472494.1 CDS Ssed_0755 NC_009831.1 900463 901212 D KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family; hypothetical protein 900463..901212 Shewanella sediminis HAW-EB3 5611020 YP_001472495.1 CDS Ssed_0756 NC_009831.1 901588 902337 R KEGG: slo:Shew_3285 protein of unknown function DUF481; hypothetical protein complement(901588..902337) Shewanella sediminis HAW-EB3 5611021 YP_001472496.1 CDS rpsF NC_009831.1 902570 902989 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 902570..902989 Shewanella sediminis HAW-EB3 5611022 YP_001472497.1 CDS Ssed_0758 NC_009831.1 902998 903303 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 902998..903303 Shewanella sediminis HAW-EB3 5611095 YP_001472498.1 CDS rpsR NC_009831.1 903315 903542 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 903315..903542 Shewanella sediminis HAW-EB3 5611096 YP_001472499.1 CDS rplI NC_009831.1 903570 904022 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 903570..904022 Shewanella sediminis HAW-EB3 5611097 YP_001472500.1 CDS Ssed_0761 NC_009831.1 904815 907037 R KEGG: slo:Shew_3279 hypothetical protein; hypothetical protein complement(904815..907037) Shewanella sediminis HAW-EB3 5611098 YP_001472501.1 CDS Ssed_0762 NC_009831.1 907145 908551 D KEGG: slo:Shew_3278 replicative DNA helicase; replicative DNA helicase 907145..908551 Shewanella sediminis HAW-EB3 5611017 YP_001472502.1 CDS alr NC_009831.1 908755 909831 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 908755..909831 Shewanella sediminis HAW-EB3 5611018 YP_001472503.1 CDS Ssed_0764 NC_009831.1 909917 911269 D KEGG: slo:Shew_3276 hypothetical protein; hypothetical protein 909917..911269 Shewanella sediminis HAW-EB3 5611019 YP_001472504.1 CDS Ssed_0765 NC_009831.1 911367 911831 R KEGG: sbl:Sbal_3636 chemotaxis protein CheX; chemotaxis protein CheX complement(911367..911831) Shewanella sediminis HAW-EB3 5611235 YP_001472505.1 CDS Ssed_0766 NC_009831.1 912454 913437 D KEGG: slo:Shew_0536 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 912454..913437 Shewanella sediminis HAW-EB3 5611236 YP_001472506.1 CDS Ssed_0767 NC_009831.1 913721 914017 D KEGG: slo:Shew_0537 hypothetical protein; hypothetical protein 913721..914017 Shewanella sediminis HAW-EB3 5611237 YP_001472507.1 CDS Ssed_0768 NC_009831.1 914168 914386 D KEGG: slo:Shew_0538 phage shock protein C, PspC; phage shock protein C, PspC 914168..914386 Shewanella sediminis HAW-EB3 5611238 YP_001472508.1 CDS Ssed_0769 NC_009831.1 914407 914760 D KEGG: slo:Shew_0539 hypothetical protein; hypothetical protein 914407..914760 Shewanella sediminis HAW-EB3 5611279 YP_001472509.1 CDS Ssed_0770 NC_009831.1 914823 915563 R KEGG: shn:Shewana3_0721 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(914823..915563) Shewanella sediminis HAW-EB3 5611280 YP_001472510.1 CDS Ssed_0771 NC_009831.1 915596 916072 D KEGG: she:Shewmr4_3239 protein of unknown function DUF461; hypothetical protein 915596..916072 Shewanella sediminis HAW-EB3 5611281 YP_001472511.1 CDS Ssed_0772 NC_009831.1 916111 917082 D KEGG: slo:Shew_0542 hypothetical protein; hypothetical protein 916111..917082 Shewanella sediminis HAW-EB3 5614045 YP_001472512.1 CDS Ssed_0773 NC_009831.1 917090 917854 D KEGG: slo:Shew_0543 hypothetical protein; hypothetical protein 917090..917854 Shewanella sediminis HAW-EB3 5614046 YP_001472513.1 CDS tolC NC_009831.1 917989 919314 R trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein complement(917989..919314) Shewanella sediminis HAW-EB3 5614047 YP_001472514.1 CDS Ssed_0775 NC_009831.1 919626 920240 D KEGG: slo:Shew_0545 ADP-ribose diphosphatase; ADP-ribose diphosphatase 919626..920240 Shewanella sediminis HAW-EB3 5614048 YP_001472515.1 CDS Ssed_0776 NC_009831.1 920297 920746 D KEGG: slo:Shew_0546 protein of unknown function DUF1249; hypothetical protein 920297..920746 Shewanella sediminis HAW-EB3 5611359 YP_001472516.1 CDS Ssed_0777 NC_009831.1 920756 921595 D KEGG: slo:Shew_0547 calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein 920756..921595 Shewanella sediminis HAW-EB3 5611360 YP_001472517.1 CDS Ssed_0778 NC_009831.1 921828 922406 D KEGG: slo:Shew_0548 protein of unknown function UPF0227; hypothetical protein 921828..922406 Shewanella sediminis HAW-EB3 5611361 YP_001472518.1 CDS Ssed_0779 NC_009831.1 922455 924341 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 922455..924341 Shewanella sediminis HAW-EB3 5611373 YP_001472519.1 CDS Ssed_0780 NC_009831.1 924653 925816 D KEGG: slo:Shew_0550 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 924653..925816 Shewanella sediminis HAW-EB3 5611374 YP_001472520.1 CDS Ssed_0781 NC_009831.1 925813 928086 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 925813..928086 Shewanella sediminis HAW-EB3 5611375 YP_001472521.1 CDS Ssed_0782 NC_009831.1 928175 928366 R KEGG: shn:Shewana3_0581 BFD domain protein (2Fe-2S)-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein complement(928175..928366) Shewanella sediminis HAW-EB3 5611376 YP_001472522.1 CDS Ssed_0783 NC_009831.1 928604 929530 R KEGG: slo:Shew_0553 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(928604..929530) Shewanella sediminis HAW-EB3 5609891 YP_001472523.1 CDS Ssed_0784 NC_009831.1 929565 929909 D KEGG: sbl:Sbal_0545 hypothetical protein; hypothetical protein 929565..929909 Shewanella sediminis HAW-EB3 5609892 YP_001472524.1 CDS Ssed_0785 NC_009831.1 930068 930763 R KEGG: slo:Shew_0554 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(930068..930763) Shewanella sediminis HAW-EB3 5609893 YP_001472525.1 CDS Ssed_0786 NC_009831.1 930763 933963 R KEGG: slo:Shew_0555 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(930763..933963) Shewanella sediminis HAW-EB3 5609917 YP_001472526.1 CDS Ssed_0787 NC_009831.1 934132 935010 R KEGG: sbl:Sbal_0548 protein of unknown function DUF6, transmembrane; hypothetical protein complement(934132..935010) Shewanella sediminis HAW-EB3 5609918 YP_001472527.1 CDS psd NC_009831.1 935010 935873 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(935010..935873) Shewanella sediminis HAW-EB3 5609919 YP_001472528.1 CDS Ssed_0789 NC_009831.1 935907 936965 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(935907..936965) Shewanella sediminis HAW-EB3 5609920 YP_001472529.1 CDS Ssed_0790 NC_009831.1 937079 937624 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 937079..937624 Shewanella sediminis HAW-EB3 5613921 YP_001472530.1 CDS Ssed_0791 NC_009831.1 939047 939502 D KEGG: saz:Sama_3031 conserved hypothetical protein; hypothetical protein 939047..939502 Shewanella sediminis HAW-EB3 5611481 YP_001472531.1 CDS Ssed_0792 NC_009831.1 940004 941482 D KEGG: slo:Shew_0561 carbohydrate kinase, YjeF-related protein; carbohydrate kinase 940004..941482 Shewanella sediminis HAW-EB3 5613923 YP_001472532.1 CDS Ssed_0793 NC_009831.1 941616 942074 D KEGG: slo:Shew_0562 protein of unknown function UPF0079; hypothetical protein 941616..942074 Shewanella sediminis HAW-EB3 5611377 YP_001472533.1 CDS Ssed_0794 NC_009831.1 942077 943399 D KEGG: slo:Shew_0563 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 942077..943399 Shewanella sediminis HAW-EB3 5611378 YP_001472534.1 CDS mutL NC_009831.1 943453 945327 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 943453..945327 Shewanella sediminis HAW-EB3 5611379 YP_001472535.1 CDS miaA NC_009831.1 945335 946246 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 945335..946246 Shewanella sediminis HAW-EB3 5611380 YP_001472536.1 CDS Ssed_0797 NC_009831.1 946340 946621 D KEGG: slo:Shew_0566 RNA chaperone Hfq; RNA chaperone Hfq 946340..946621 Shewanella sediminis HAW-EB3 5611057 YP_001472537.1 CDS Ssed_0798 NC_009831.1 946641 947939 D KEGG: slo:Shew_0567 GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 946641..947939 Shewanella sediminis HAW-EB3 5611058 YP_001472538.1 CDS Ssed_0799 NC_009831.1 947983 949128 D KEGG: slo:Shew_0568 HflK protein; HflK protein 947983..949128 Shewanella sediminis HAW-EB3 5611059 YP_001472539.1 CDS Ssed_0800 NC_009831.1 949131 950009 D KEGG: slo:Shew_0569 HflC protein; HflC protein 949131..950009 Shewanella sediminis HAW-EB3 5611527 YP_001472540.1 CDS Ssed_0801 NC_009831.1 950338 950928 D KEGG: slo:Shew_0570 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol--cytochrome-c reductase 950338..950928 Shewanella sediminis HAW-EB3 5611528 YP_001472541.1 CDS Ssed_0802 NC_009831.1 950928 952142 D KEGG: slo:Shew_0571 cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein 950928..952142 Shewanella sediminis HAW-EB3 5611529 YP_001472542.1 CDS Ssed_0803 NC_009831.1 952142 952843 D KEGG: slo:Shew_0572 cytochrome c1; cytochrome c1 952142..952843 Shewanella sediminis HAW-EB3 5611530 YP_001472543.1 CDS sspA NC_009831.1 952952 953581 D transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 952952..953581 Shewanella sediminis HAW-EB3 5610285 YP_001472544.1 CDS Ssed_0805 NC_009831.1 953581 954039 D KEGG: slo:Shew_0574 stringent starvation protein B; ClpXP protease specificity-enhancing factor 953581..954039 Shewanella sediminis HAW-EB3 5610286 YP_001472545.1 CDS Ssed_0806 NC_009831.1 954224 954817 D KEGG: sdn:Sden_3196 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase 954224..954817 Shewanella sediminis HAW-EB3 5610287 YP_001472546.1 CDS Ssed_0807 NC_009831.1 955056 957539 D KEGG: slo:Shew_0576 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 955056..957539 Shewanella sediminis HAW-EB3 5611396 YP_001472547.1 CDS Ssed_0808 NC_009831.1 957732 958874 D KEGG: shn:Shewana3_0608 signal transduction protein; signal transduction protein 957732..958874 Shewanella sediminis HAW-EB3 5611397 YP_001472548.1 CDS argD NC_009831.1 959349 960566 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase 959349..960566 Shewanella sediminis HAW-EB3 5611398 YP_001472549.1 CDS Ssed_0810 NC_009831.1 960702 961721 D KEGG: slo:Shew_0579 arginine N-succinyltransferase; arginine N-succinyltransferase 960702..961721 Shewanella sediminis HAW-EB3 5611399 YP_001472550.1 CDS astD NC_009831.1 961730 963190 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 961730..963190 Shewanella sediminis HAW-EB3 5611705 YP_001472551.1 CDS Ssed_0812 NC_009831.1 963418 964215 D KEGG: slo:Shew_0581 hypothetical protein; hypothetical protein 963418..964215 Shewanella sediminis HAW-EB3 5611706 YP_001472552.1 CDS Ssed_0813 NC_009831.1 964362 965351 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(964362..965351) Shewanella sediminis HAW-EB3 5611707 YP_001472553.1 CDS Ssed_0814 NC_009831.1 965609 967906 D KEGG: slo:Shew_0774 peptidase S9B, dipeptidylpeptidase IV domain protein; peptidase S9B dipeptidylpeptidase IV subunit 965609..967906 Shewanella sediminis HAW-EB3 5611934 YP_001472554.1 CDS Ssed_0815 NC_009831.1 968335 969054 R KEGG: slo:Shew_0777 two component transcriptional regulator, winged helix family; two-component response regulator complement(968335..969054) Shewanella sediminis HAW-EB3 5611935 YP_001472555.1 CDS Ssed_0816 NC_009831.1 969633 970070 D KEGG: slo:Shew_0778 hypothetical protein; hypothetical protein 969633..970070 Shewanella sediminis HAW-EB3 5611936 YP_001472556.1 CDS Ssed_0817 NC_009831.1 970546 971898 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 970546..971898 Shewanella sediminis HAW-EB3 5611937 YP_001472557.1 CDS Ssed_0818 NC_009831.1 971985 973091 D KEGG: slo:Shew_0780 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 971985..973091 Shewanella sediminis HAW-EB3 5612004 YP_001472558.1 CDS Ssed_0819 NC_009831.1 973185 977045 R KEGG: slo:Shew_0781 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(973185..977045) Shewanella sediminis HAW-EB3 5612005 YP_001472559.1 CDS Ssed_0820 NC_009831.1 977261 977722 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(977261..977722) Shewanella sediminis HAW-EB3 5612006 YP_001472560.1 CDS Ssed_0821 NC_009831.1 977891 978568 R KEGG: shm:Shewmr7_0827 pseudouridylate synthase; pseudouridylate synthase complement(977891..978568) Shewanella sediminis HAW-EB3 5612639 YP_001472561.1 CDS Ssed_0822 NC_009831.1 978729 979019 R KEGG: slo:Shew_0784 hypothetical protein; hypothetical protein complement(978729..979019) Shewanella sediminis HAW-EB3 5612640 YP_001472562.1 CDS Ssed_0823 NC_009831.1 979093 979644 R KEGG: shm:Shewmr7_3213 methyltransferase type 12; type 12 methyltransferase complement(979093..979644) Shewanella sediminis HAW-EB3 5612641 YP_001472563.1 CDS Ssed_0824 NC_009831.1 979619 980029 R KEGG: slo:Shew_0786 hypothetical protein; hypothetical protein complement(979619..980029) Shewanella sediminis HAW-EB3 5612642 YP_001472564.1 CDS Ssed_0825 NC_009831.1 980258 981247 D KEGG: slo:Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 980258..981247 Shewanella sediminis HAW-EB3 5612378 YP_001472565.1 CDS Ssed_0826 NC_009831.1 981335 982072 D KEGG: sfr:Sfri_0519 dienelactone hydrolase; dienelactone hydrolase 981335..982072 Shewanella sediminis HAW-EB3 5612379 YP_001472566.1 CDS Ssed_0827 NC_009831.1 982222 982758 R KEGG: she:Shewmr4_0805 hypothetical protein; hypothetical protein complement(982222..982758) Shewanella sediminis HAW-EB3 5612380 YP_001472567.1 CDS Ssed_0828 NC_009831.1 983074 983817 D KEGG: slo:Shew_0791 spermine synthase; spermine synthase 983074..983817 Shewanella sediminis HAW-EB3 5612454 YP_001472568.1 CDS Ssed_0829 NC_009831.1 984038 984607 D KEGG: slo:Shew_0792 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 984038..984607 Shewanella sediminis HAW-EB3 5612455 YP_001472569.1 CDS Ssed_0830 NC_009831.1 984810 986378 D KEGG: shn:Shewana3_3326 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 984810..986378 Shewanella sediminis HAW-EB3 5612456 YP_001472570.1 CDS Ssed_0831 NC_009831.1 986648 987703 D KEGG: slo:Shew_0794 diguanylate cyclase; diguanylate cyclase 986648..987703 Shewanella sediminis HAW-EB3 5612457 YP_001472571.1 CDS Ssed_0832 NC_009831.1 987827 988024 R KEGG: slo:Shew_0796 hypothetical protein; hypothetical protein complement(987827..988024) Shewanella sediminis HAW-EB3 5612965 YP_001472572.1 CDS Ssed_0833 NC_009831.1 988181 989605 R KEGG: slo:Shew_0797 hypothetical protein; hypothetical protein complement(988181..989605) Shewanella sediminis HAW-EB3 5612966 YP_001472573.1 CDS Ssed_0834 NC_009831.1 989927 990382 R KEGG: slo:Shew_0798 hypothetical protein; hypothetical protein complement(989927..990382) Shewanella sediminis HAW-EB3 5612967 YP_001472574.1 CDS Ssed_0835 NC_009831.1 990773 991225 D KEGG: sfr:Sfri_0578 transcriptional regulator, MarR family protein; MarR family transcriptional regulator 990773..991225 Shewanella sediminis HAW-EB3 5613056 YP_001472575.1 CDS Ssed_0836 NC_009831.1 991322 992497 D KEGG: sbl:Sbal_0867 FAD dependent oxidoreductase; FAD dependent oxidoreductase 991322..992497 Shewanella sediminis HAW-EB3 5613057 YP_001472576.1 CDS Ssed_0837 NC_009831.1 992641 994305 D KEGG: slo:Shew_0808 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 992641..994305 Shewanella sediminis HAW-EB3 5613058 YP_001472577.1 CDS Ssed_0838 NC_009831.1 994387 998709 R KEGG: slo:Shew_0809 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(994387..998709) Shewanella sediminis HAW-EB3 5613059 YP_001472578.1 CDS Ssed_0839 NC_009831.1 999065 1000048 R KEGG: slo:Shew_0810 ion transport 2 domain protein; ion transport 2 domain-containing protein complement(999065..1000048) Shewanella sediminis HAW-EB3 5612990 YP_001472579.1 CDS Ssed_0840 NC_009831.1 1000309 1001367 D KEGG: sbl:Sbal_0872 peptide chain release factor 2; peptide chain release factor 2 1000309..1001367 Shewanella sediminis HAW-EB3 5612991 YP_001472580.1 CDS lysS NC_009831.1 1001438 1002940 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1001438..1002940 Shewanella sediminis HAW-EB3 5612992 YP_001472581.1 CDS Ssed_0842 NC_009831.1 1003204 1005657 D KEGG: sbl:Sbal_1251 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1003204..1005657 Shewanella sediminis HAW-EB3 5613105 YP_001472582.1 CDS Ssed_0843 NC_009831.1 1005697 1006353 R KEGG: cps:CPS_1154 RNA pseudouridine synthase family protein; RNA pseudouridine synthase family protein complement(1005697..1006353) Shewanella sediminis HAW-EB3 5613106 YP_001472583.1 CDS Ssed_0844 NC_009831.1 1006590 1007378 D KEGG: slo:Shew_0815 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 1006590..1007378 Shewanella sediminis HAW-EB3 5613107 YP_001472584.1 CDS Ssed_0845 NC_009831.1 1007379 1009115 R KEGG: tbd:Tbd_2693 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(1007379..1009115) Shewanella sediminis HAW-EB3 5613108 YP_001472585.1 CDS Ssed_0846 NC_009831.1 1009500 1009817 D KEGG: slo:Shew_0817 cupin 2, conserved barrel domain protein; cupin 1009500..1009817 Shewanella sediminis HAW-EB3 5613200 YP_001472586.1 CDS Ssed_0847 NC_009831.1 1009951 1011867 D KEGG: shn:Shewana3_0800 peptidase U32; peptidase U32 1009951..1011867 Shewanella sediminis HAW-EB3 5613201 YP_001472587.1 CDS Ssed_0848 NC_009831.1 1012124 1012498 D KEGG: slo:Shew_0819 protein of unknown function DUF1696; hypothetical protein 1012124..1012498 Shewanella sediminis HAW-EB3 5613202 YP_001472588.1 CDS Ssed_0849 NC_009831.1 1012611 1013843 R KEGG: slo:Shew_0820 hypothetical protein; hypothetical protein complement(1012611..1013843) Shewanella sediminis HAW-EB3 5613284 YP_001472589.1 CDS Ssed_0850 NC_009831.1 1014128 1014511 D hypothetical protein 1014128..1014511 Shewanella sediminis HAW-EB3 5613285 YP_001472590.1 CDS Ssed_0851 NC_009831.1 1014679 1016313 D KEGG: mxa:MXAN_5292 hypothetical protein; hypothetical protein 1014679..1016313 Shewanella sediminis HAW-EB3 5613286 YP_001472591.1 CDS Ssed_0852 NC_009831.1 1016452 1016742 D KEGG: vfi:VF1323 lipoprotein; lipoprotein 1016452..1016742 Shewanella sediminis HAW-EB3 5613287 YP_001472592.1 CDS Ssed_0853 NC_009831.1 1016763 1017200 R KEGG: slo:Shew_0734 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(1016763..1017200) Shewanella sediminis HAW-EB3 5613493 YP_001472593.1 CDS Ssed_0854 NC_009831.1 1017372 1018583 R KEGG: son:SO3789 aminotransferase, class V; class V aminotransferase complement(1017372..1018583) Shewanella sediminis HAW-EB3 5613494 YP_001472594.1 CDS Ssed_0855 NC_009831.1 1018780 1019823 R KEGG: slo:Shew_0736 aldo/keto reductase; aldo/keto reductase complement(1018780..1019823) Shewanella sediminis HAW-EB3 5613495 YP_001472595.1 CDS Ssed_0856 NC_009831.1 1020048 1021106 R KEGG: sbl:Sbal_0762 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1020048..1021106) Shewanella sediminis HAW-EB3 5613418 YP_001472596.1 CDS Ssed_0857 NC_009831.1 1021299 1021868 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase complement(1021299..1021868) Shewanella sediminis HAW-EB3 5613419 YP_001472597.1 CDS Ssed_0858 NC_009831.1 1022469 1023740 D KEGG: slo:Shew_0739 aromatic amino acid permease; aromatic amino acid permease 1022469..1023740 Shewanella sediminis HAW-EB3 5613420 YP_001472598.1 CDS Ssed_0859 NC_009831.1 1023825 1025192 D KEGG: slo:Shew_0740 L-serine dehydratase 1; L-serine ammonia-lyase 1023825..1025192 Shewanella sediminis HAW-EB3 5613421 YP_001472599.1 CDS Ssed_0860 NC_009831.1 1025255 1025698 R KEGG: she:Shewmr4_0762 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1025255..1025698) Shewanella sediminis HAW-EB3 5613880 YP_001472600.1 CDS Ssed_0861 NC_009831.1 1026119 1026481 D KEGG: slo:Shew_0742 hypothetical protein; hypothetical protein 1026119..1026481 Shewanella sediminis HAW-EB3 5613881 YP_001472601.1 CDS Ssed_0862 NC_009831.1 1026798 1028147 D KEGG: slo:Shew_0743 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1026798..1028147 Shewanella sediminis HAW-EB3 5613882 YP_001472602.1 CDS Ssed_0863 NC_009831.1 1028262 1028675 R KEGG: slo:Shew_0744 protein of unknown function DUF306, MetA and HslJ; hypothetical protein complement(1028262..1028675) Shewanella sediminis HAW-EB3 5613628 YP_001472603.1 CDS Ssed_0864 NC_009831.1 1028765 1028980 D KEGG: she:Shewmr4_0766 hypothetical protein; hypothetical protein 1028765..1028980 Shewanella sediminis HAW-EB3 5613629 YP_001472604.1 CDS Ssed_0865 NC_009831.1 1028998 1029942 R KEGG: slo:Shew_0746 diguanylate cyclase; diguanylate cyclase complement(1028998..1029942) Shewanella sediminis HAW-EB3 5613630 YP_001472605.1 CDS Ssed_0866 NC_009831.1 1030174 1031184 R KEGG: slo:Shew_0747 GGDEF domain protein; diguanylate cyclase complement(1030174..1031184) Shewanella sediminis HAW-EB3 5613631 YP_001472606.1 CDS Ssed_0867 NC_009831.1 1031359 1031916 D KEGG: sbl:Sbal_0772 acetyltransferase, GNAT family; acetyltransferase 1031359..1031916 Shewanella sediminis HAW-EB3 5613943 YP_001472607.1 CDS Ssed_0868 NC_009831.1 1031930 1032319 D KEGG: sfr:Sfri_0644 hypothetical protein; hypothetical protein 1031930..1032319 Shewanella sediminis HAW-EB3 5613944 YP_001472608.1 CDS Ssed_0869 NC_009831.1 1032397 1033362 R KEGG: bam:Bamb_1916 transcriptional regulator, LuxR family; response regulator complement(1032397..1033362) Shewanella sediminis HAW-EB3 5613945 YP_001472609.1 CDS Ssed_0870 NC_009831.1 1033432 1035081 D KEGG: bbt:BBta_4675 fumarate reductase flavoprotein; fumarate reductase flavoprotein subunit 1033432..1035081 Shewanella sediminis HAW-EB3 5611444 YP_001472610.1 CDS Ssed_0871 NC_009831.1 1035108 1036838 D KEGG: rfr:Rfer_3509 thiamine pyrophosphate enzyme-like TPP binding protein; thiamine pyrophosphate enzyme-like TPP binding protein 1035108..1036838 Shewanella sediminis HAW-EB3 5611445 YP_001472611.1 CDS Ssed_0872 NC_009831.1 1036941 1037969 R KEGG: slo:Shew_3159 uncharacterized FlgJ-related protein-like; FlgJ-like protein complement(1036941..1037969) Shewanella sediminis HAW-EB3 5611446 YP_001472612.1 CDS Ssed_0873 NC_009831.1 1038223 1039374 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1038223..1039374) Shewanella sediminis HAW-EB3 5611447 YP_001472613.1 CDS Ssed_0874 NC_009831.1 1039848 1041839 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1039848..1041839 Shewanella sediminis HAW-EB3 5611870 YP_001472614.1 CDS Ssed_0875 NC_009831.1 1042100 1043122 D NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 1042100..1043122 Shewanella sediminis HAW-EB3 5611871 YP_001472615.1 CDS pgk NC_009831.1 1043400 1044575 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1043400..1044575 Shewanella sediminis HAW-EB3 5611872 YP_001472616.1 CDS Ssed_0877 NC_009831.1 1044805 1045869 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1044805..1045869 Shewanella sediminis HAW-EB3 5613936 YP_001472617.1 CDS Ssed_0878 NC_009831.1 1046084 1046824 D KEGG: slo:Shew_0756 protein of unknown function DUF481; hypothetical protein 1046084..1046824 Shewanella sediminis HAW-EB3 5613937 YP_001472618.1 CDS Ssed_0879 NC_009831.1 1047092 1047838 D KEGG: slo:Shew_0757 transcriptional regulator, CadC; hypothetical protein 1047092..1047838 Shewanella sediminis HAW-EB3 5613938 YP_001472619.1 CDS Ssed_0880 NC_009831.1 1047831 1048364 D KEGG: she:Shewmr4_0780 hypothetical protein; hypothetical protein 1047831..1048364 Shewanella sediminis HAW-EB3 5613939 YP_001472620.1 CDS Ssed_0881 NC_009831.1 1049328 1049909 R KEGG: slo:Shew_0758 hypothetical protein; hypothetical protein complement(1049328..1049909) Shewanella sediminis HAW-EB3 5613588 YP_001472621.1 CDS Ssed_0882 NC_009831.1 1049876 1050700 R KEGG: slo:Shew_0759 cytochrome c; cytochrome c complement(1049876..1050700) Shewanella sediminis HAW-EB3 5613589 YP_001472622.1 CDS Ssed_0883 NC_009831.1 1051175 1051909 D KEGG: slo:Shew_0760 response regulator receiver protein; response regulator receiver protein 1051175..1051909 Shewanella sediminis HAW-EB3 5613590 YP_001472623.1 CDS Ssed_0884 NC_009831.1 1051902 1052423 D KEGG: slo:Shew_0761 hypothetical protein; hypothetical protein 1051902..1052423 Shewanella sediminis HAW-EB3 5612776 YP_001472624.1 CDS Ssed_0885 NC_009831.1 1052605 1053990 D KEGG: slo:Shew_0762 hypothetical protein; hypothetical protein 1052605..1053990 Shewanella sediminis HAW-EB3 5612777 YP_001472625.1 CDS Ssed_0886 NC_009831.1 1054035 1056251 R KEGG: slo:Shew_0763 PAS/PAC sensor protein; PAS/PAC sensor protein complement(1054035..1056251) Shewanella sediminis HAW-EB3 5612778 YP_001472626.1 CDS Ssed_0887 NC_009831.1 1056404 1057078 R KEGG: slo:Shew_0764 radical SAM domain protein; radical SAM domain-containing protein complement(1056404..1057078) Shewanella sediminis HAW-EB3 5612779 YP_001472627.1 CDS Ssed_0888 NC_009831.1 1057205 1060372 R KEGG: slo:Shew_0765 acriflavin resistance protein; acriflavin resistance protein complement(1057205..1060372) Shewanella sediminis HAW-EB3 5613618 YP_001472628.1 CDS Ssed_0889 NC_009831.1 1060372 1061589 R KEGG: slo:Shew_0766 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1060372..1061589) Shewanella sediminis HAW-EB3 5613619 YP_001472629.1 CDS Ssed_0890 NC_009831.1 1061964 1063190 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(1061964..1063190) Shewanella sediminis HAW-EB3 5613620 YP_001472630.1 CDS Ssed_0891 NC_009831.1 1063310 1064044 R KEGG: sbl:Sbal_0841 methyltransferase small; methyltransferase small complement(1063310..1064044) Shewanella sediminis HAW-EB3 5609763 YP_001472631.1 CDS Ssed_0892 NC_009831.1 1064519 1065850 D KEGG: slo:Shew_0769 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1064519..1065850 Shewanella sediminis HAW-EB3 5609764 YP_001472632.1 CDS Ssed_0893 NC_009831.1 1066274 1067188 D KEGG: spc:Sputcn32_0890 tyrosine recombinase XerD; tyrosine recombinase XerD 1066274..1067188 Shewanella sediminis HAW-EB3 5609765 YP_001472633.1 CDS Ssed_0894 NC_009831.1 1067490 1068227 D KEGG: slo:Shew_0771 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 1067490..1068227 Shewanella sediminis HAW-EB3 5609766 YP_001472634.1 CDS Ssed_0895 NC_009831.1 1068380 1070104 D KEGG: sbl:Sbal_0845 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1068380..1070104 Shewanella sediminis HAW-EB3 5614074 YP_001472635.1 CDS Ssed_0896 NC_009831.1 1071155 1072030 D KEGG: shw:Sputw3181_0790 transcriptional regulator, LysR family; LysR family transcriptional regulator 1071155..1072030 Shewanella sediminis HAW-EB3 5614075 YP_001472636.1 CDS Ssed_0897 NC_009831.1 1072670 1073674 D KEGG: yps:YPTB1775 hypothetical protein; hypothetical protein 1072670..1073674 Shewanella sediminis HAW-EB3 5614076 YP_001472637.1 CDS Ssed_0898 NC_009831.1 1074254 1074910 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1074254..1074910) Shewanella sediminis HAW-EB3 5613957 YP_001472638.1 CDS Ssed_0899 NC_009831.1 1075093 1075977 R KEGG: hypothetical protein; hypothetical protein complement(1075093..1075977) Shewanella sediminis HAW-EB3 5613958 YP_001472639.1 CDS Ssed_0900 NC_009831.1 1076201 1077133 D KEGG: slo:Shew_0826 protein of unknown function DUF808; hypothetical protein 1076201..1077133 Shewanella sediminis HAW-EB3 5613959 YP_001472640.1 CDS Ssed_0901 NC_009831.1 1077198 1078106 R KEGG: shn:Shewana3_0884 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1077198..1078106) Shewanella sediminis HAW-EB3 5613960 YP_001472641.1 CDS Ssed_0902 NC_009831.1 1078213 1078647 D KEGG: shm:Shewmr7_0922 LrgA family protein; LrgA family protein 1078213..1078647 Shewanella sediminis HAW-EB3 5613060 YP_001472642.1 CDS Ssed_0903 NC_009831.1 1078648 1079337 D KEGG: she:Shewmr4_3049 LrgB family protein; LrgB family protein 1078648..1079337 Shewanella sediminis HAW-EB3 5613061 YP_001472643.1 CDS Ssed_0904 NC_009831.1 1079782 1080852 D KEGG: cps:CPS_1263 hypothetical protein; hypothetical protein 1079782..1080852 Shewanella sediminis HAW-EB3 5613062 YP_001472644.1 CDS Ssed_0905 NC_009831.1 1081170 1081790 R KEGG: cps:CPS_1260 nitrate/nitrite DNA-binding response regulator; nitrate/nitrite DNA-binding response regulator complement(1081170..1081790) Shewanella sediminis HAW-EB3 5614208 YP_001472645.1 CDS Ssed_0906 NC_009831.1 1081787 1083196 R KEGG: cps:CPS_1261 sensor histidine kinase; sensor histidine kinase complement(1081787..1083196) Shewanella sediminis HAW-EB3 5614209 YP_001472646.1 CDS Ssed_0907 NC_009831.1 1083952 1085595 D KEGG: slo:Shew_3135 L-lactate permease; L-lactate permease 1083952..1085595 Shewanella sediminis HAW-EB3 5614210 YP_001472647.1 CDS Ssed_0908 NC_009831.1 1085664 1088492 D KEGG: shw:Sputw3181_2835 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1085664..1088492 Shewanella sediminis HAW-EB3 5614211 YP_001472648.1 CDS Ssed_0909 NC_009831.1 1088572 1088991 R KEGG: sbl:Sbal_0650 CBS domain containing protein; hypothetical protein complement(1088572..1088991) Shewanella sediminis HAW-EB3 5611337 YP_001472649.1 CDS Ssed_0910 NC_009831.1 1089193 1090962 D KEGG: slo:Shew_0832 alkaline phosphatase; alkaline phosphatase 1089193..1090962 Shewanella sediminis HAW-EB3 5611338 YP_001472650.1 CDS Ssed_0911 NC_009831.1 1091301 1091861 D KEGG: slo:Shew_0833 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 1091301..1091861 Shewanella sediminis HAW-EB3 5611339 YP_001472651.1 CDS Ssed_0912 NC_009831.1 1091975 1092187 R KEGG: slo:Shew_0834 hypothetical protein; hypothetical protein complement(1091975..1092187) Shewanella sediminis HAW-EB3 5613997 YP_001472652.1 CDS Ssed_0913 NC_009831.1 1092423 1095062 R KEGG: she:Shewmr4_3040 aminopeptidase N; aminopeptidase N complement(1092423..1095062) Shewanella sediminis HAW-EB3 5613998 YP_001472653.1 CDS Ssed_0914 NC_009831.1 1095254 1095859 R KEGG: saz:Sama_0637 conserved hypothetical protein; hypothetical protein complement(1095254..1095859) Shewanella sediminis HAW-EB3 5613999 YP_001472654.1 CDS Ssed_0915 NC_009831.1 1095870 1097237 R KEGG: spc:Sputcn32_3014 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1095870..1097237) Shewanella sediminis HAW-EB3 5614000 YP_001472655.1 CDS Ssed_0916 NC_009831.1 1097514 1097726 R KEGG: slo:Shew_0838 SlyX family protein; SlyX family protein complement(1097514..1097726) Shewanella sediminis HAW-EB3 5614240 YP_001472656.1 CDS Ssed_0917 NC_009831.1 1097735 1098694 R KEGG: spc:Sputcn32_3011 WD-40 repeat protein; WD-40 repeat-containing protein complement(1097735..1098694) Shewanella sediminis HAW-EB3 5614241 YP_001472657.1 CDS Ssed_0918 NC_009831.1 1098917 1099696 D KEGG: slo:Shew_0840 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1098917..1099696 Shewanella sediminis HAW-EB3 5614242 YP_001472658.1 CDS Ssed_0919 NC_009831.1 1099834 1101000 D KEGG: vpa:VP0236 nucleotide sugar dehydrogenase; nucleotide sugar dehydrogenase 1099834..1101000 Shewanella sediminis HAW-EB3 5613257 YP_001472659.1 CDS Ssed_0920 NC_009831.1 1101393 1101830 R KEGG: ent:Ent638_2073 hypothetical protein; hypothetical protein complement(1101393..1101830) Shewanella sediminis HAW-EB3 5613258 YP_001472660.1 CDS Ssed_0921 NC_009831.1 1101818 1102180 R KEGG: pfl:PFL_3048 hypothetical protein; hypothetical protein complement(1101818..1102180) Shewanella sediminis HAW-EB3 5613259 YP_001472661.1 CDS arnT NC_009831.1 1102180 1103820 R catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase complement(1102180..1103820) Shewanella sediminis HAW-EB3 5613260 YP_001472662.1 CDS Ssed_0923 NC_009831.1 1103832 1104749 R KEGG: pfo:Pfl_2844 polysaccharide deacetylase; polysaccharide deacetylase complement(1103832..1104749) Shewanella sediminis HAW-EB3 5612493 YP_001472663.1 CDS Ssed_0924 NC_009831.1 1104746 1106728 R Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase complement(1104746..1106728) Shewanella sediminis HAW-EB3 5612494 YP_001472664.1 CDS Ssed_0925 NC_009831.1 1106770 1107765 R KEGG: pfl:PFL_3044 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(1106770..1107765) Shewanella sediminis HAW-EB3 5612495 YP_001472665.1 CDS Ssed_0926 NC_009831.1 1107765 1108931 R catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase complement(1107765..1108931) Shewanella sediminis HAW-EB3 5612118 YP_001472666.1 CDS Ssed_0927 NC_009831.1 1109747 1110217 D KEGG: mgm:Mmc1_0984 hypothetical protein; hypothetical protein 1109747..1110217 Shewanella sediminis HAW-EB3 5612119 YP_001472667.1 CDS Ssed_0928 NC_009831.1 1110346 1110720 D KEGG: slo:Shew_0841 uncharacterized conserved protein UCP006287; hypothetical protein 1110346..1110720 Shewanella sediminis HAW-EB3 5612120 YP_001472668.1 CDS Ssed_0929 NC_009831.1 1110782 1111411 R KEGG: slo:Shew_0842 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1110782..1111411) Shewanella sediminis HAW-EB3 5612121 YP_001472669.1 CDS Ssed_0930 NC_009831.1 1111500 1113203 R KEGG: slo:Shew_0843 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite sensor protein NarQ complement(1111500..1113203) Shewanella sediminis HAW-EB3 5611125 YP_001472670.1 CDS nrfA NC_009831.1 1113449 1114849 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 1113449..1114849 Shewanella sediminis HAW-EB3 5611126 YP_001472671.1 CDS Ssed_0932 NC_009831.1 1115033 1115575 R KEGG: shw:Sputw3181_0699 isochorismatase hydrolase; isochorismatase hydrolase complement(1115033..1115575) Shewanella sediminis HAW-EB3 5611127 YP_001472672.1 CDS Ssed_0933 NC_009831.1 1115849 1116187 D KEGG: saz:Sama_0650 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1115849..1116187 Shewanella sediminis HAW-EB3 5610517 YP_001472673.1 CDS Ssed_0934 NC_009831.1 1116200 1117450 D KEGG: slo:Shew_0847 Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 1116200..1117450 Shewanella sediminis HAW-EB3 5610518 YP_001472674.1 CDS Ssed_0935 NC_009831.1 1117568 1117924 D KEGG: shw:Sputw3181_0702 hypothetical protein; hypothetical protein 1117568..1117924 Shewanella sediminis HAW-EB3 5610519 YP_001472675.1 CDS Ssed_0936 NC_009831.1 1118048 1119214 D KEGG: slo:Shew_0849 TPR repeat-containing protein; hypothetical protein 1118048..1119214 Shewanella sediminis HAW-EB3 5610520 YP_001472676.1 CDS Ssed_0937 NC_009831.1 1119912 1120970 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1119912..1120970 Shewanella sediminis HAW-EB3 5610498 YP_001472677.1 CDS Ssed_0938 NC_009831.1 1121108 1121284 R KEGG: shw:Sputw3181_0704 hypothetical protein; hypothetical protein complement(1121108..1121284) Shewanella sediminis HAW-EB3 5610499 YP_001472678.1 CDS Ssed_0939 NC_009831.1 1121661 1123433 D KEGG: slo:Shew_0853 ABC transporter-related protein; ABC transporter-like protein 1121661..1123433 Shewanella sediminis HAW-EB3 5610500 YP_001472679.1 CDS Ssed_0940 NC_009831.1 1123593 1123856 D KEGG: slo:Shew_0854 hypothetical protein; hypothetical protein 1123593..1123856 Shewanella sediminis HAW-EB3 5611333 YP_001472680.1 CDS Ssed_0941 NC_009831.1 1124394 1124939 R KEGG: son:SO0749 hypothetical protein; hypothetical protein complement(1124394..1124939) Shewanella sediminis HAW-EB3 5611334 YP_001472681.1 CDS Ssed_0942 NC_009831.1 1125081 1125665 D KEGG: slo:Shew_0857 hypothetical protein; hypothetical protein 1125081..1125665 Shewanella sediminis HAW-EB3 5611335 YP_001472682.1 CDS Ssed_0943 NC_009831.1 1125783 1126532 D KEGG: shw:Sputw3181_0711 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1125783..1126532 Shewanella sediminis HAW-EB3 5611336 YP_001472683.1 CDS Ssed_0944 NC_009831.1 1126601 1127194 D KEGG: slo:Shew_0859 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 1126601..1127194 Shewanella sediminis HAW-EB3 5611153 YP_001472684.1 CDS Ssed_0945 NC_009831.1 1127421 1128428 D KEGG: slo:Shew_0861 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1127421..1128428 Shewanella sediminis HAW-EB3 5611154 YP_001472685.1 CDS Ssed_0946 NC_009831.1 1128657 1130288 D KEGG: sfr:Sfri_0637 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1128657..1130288 Shewanella sediminis HAW-EB3 5611155 YP_001472686.1 CDS Ssed_0947 NC_009831.1 1130382 1131410 D KEGG: shm:Shewmr7_0608 ABC transporter related; ABC transporter 1130382..1131410 Shewanella sediminis HAW-EB3 5610878 YP_001472687.1 CDS Ssed_0948 NC_009831.1 1131459 1133150 D KEGG: shw:Sputw3181_0717 gamma-glutamyltransferase; gamma-glutamyltransferase 1131459..1133150 Shewanella sediminis HAW-EB3 5610879 YP_001472688.1 CDS Ssed_0949 NC_009831.1 1133279 1134217 D KEGG: slo:Shew_0864 Dyp-type peroxidase family; Dyp-type peroxidase family protein 1133279..1134217 Shewanella sediminis HAW-EB3 5610880 YP_001472689.1 CDS Ssed_0950 NC_009831.1 1134306 1134782 R KEGG: slo:Shew_0865 cupin 2, conserved barrel domain protein; cupin complement(1134306..1134782) Shewanella sediminis HAW-EB3 5610881 YP_001472690.1 CDS Ssed_0951 NC_009831.1 1135008 1135478 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(1135008..1135478) Shewanella sediminis HAW-EB3 5611264 YP_001472691.1 CDS Ssed_0952 NC_009831.1 1135847 1136782 D oxidizes malate to oxaloacetate; malate dehydrogenase 1135847..1136782 Shewanella sediminis HAW-EB3 5611265 YP_001472692.1 CDS Ssed_0953 NC_009831.1 1136876 1137847 R KEGG: slo:Shew_0868 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase complement(1136876..1137847) Shewanella sediminis HAW-EB3 5611266 YP_001472693.1 CDS rplU NC_009831.1 1138126 1138437 D KEGG: shw:Sputw3181_3188 ribosomal protein L21; 50S ribosomal protein L21 1138126..1138437 Shewanella sediminis HAW-EB3 5611267 YP_001472694.1 CDS rpmA NC_009831.1 1138453 1138707 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1138453..1138707 Shewanella sediminis HAW-EB3 5612546 YP_001472695.1 CDS obgE NC_009831.1 1138849 1140009 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1138849..1140009 Shewanella sediminis HAW-EB3 5612547 YP_001472696.1 CDS Ssed_0957 NC_009831.1 1140080 1140841 D KEGG: slo:Shew_0872 protein of unknown function DUF1212; hypothetical protein 1140080..1140841 Shewanella sediminis HAW-EB3 5612548 YP_001472697.1 CDS Ssed_0958 NC_009831.1 1140841 1141308 D KEGG: saz:Sama_2825 conserved hypothetical protein; hypothetical protein 1140841..1141308 Shewanella sediminis HAW-EB3 5612549 YP_001472698.1 CDS Ssed_0959 NC_009831.1 1141371 1141853 D KEGG: slo:Shew_0874 dihydrofolate reductase; dihydrofolate reductase 1141371..1141853 Shewanella sediminis HAW-EB3 5610589 YP_001472699.1 CDS Ssed_0960 NC_009831.1 1141954 1142340 D KEGG: slo:Shew_0875 hypothetical protein; hypothetical protein 1141954..1142340 Shewanella sediminis HAW-EB3 5610590 YP_001472700.1 CDS Ssed_0961 NC_009831.1 1142417 1144444 R KEGG: slo:Shew_0876 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1142417..1144444) Shewanella sediminis HAW-EB3 5610591 YP_001472701.1 CDS apaH NC_009831.1 1144581 1145405 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1144581..1145405) Shewanella sediminis HAW-EB3 5610592 YP_001472702.1 CDS apaG NC_009831.1 1145440 1145820 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(1145440..1145820) Shewanella sediminis HAW-EB3 5609913 YP_001472703.1 CDS ksgA NC_009831.1 1145915 1146718 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1145915..1146718) Shewanella sediminis HAW-EB3 5609914 YP_001472704.1 CDS pdxA NC_009831.1 1146732 1147718 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1146732..1147718) Shewanella sediminis HAW-EB3 5609915 YP_001472705.1 CDS Ssed_0966 NC_009831.1 1147724 1149028 R KEGG: slo:Shew_0881 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1147724..1149028) Shewanella sediminis HAW-EB3 5609916 YP_001472706.1 CDS Ssed_0967 NC_009831.1 1149150 1151474 R KEGG: slo:Shew_0882 organic solvent tolerance protein; organic solvent tolerance protein complement(1149150..1151474) Shewanella sediminis HAW-EB3 5611519 YP_001472707.1 CDS Ssed_0968 NC_009831.1 1151629 1152633 D KEGG: shm:Shewmr7_3111 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1151629..1152633 Shewanella sediminis HAW-EB3 5611520 YP_001472708.1 CDS Ssed_0969 NC_009831.1 1152630 1153319 D KEGG: slo:Shew_0884 nucleotidyl transferase; nucleotidyl transferase 1152630..1153319 Shewanella sediminis HAW-EB3 5611521 YP_001472709.1 CDS djlA NC_009831.1 1153396 1154175 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1153396..1154175 Shewanella sediminis HAW-EB3 5611522 YP_001472710.1 CDS Ssed_0971 NC_009831.1 1154315 1154944 D KEGG: slo:Shew_0886 hypothetical protein; hypothetical protein 1154315..1154944 Shewanella sediminis HAW-EB3 5614232 YP_001472711.1 CDS Ssed_0972 NC_009831.1 1154987 1155958 D KEGG: slo:Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1154987..1155958 Shewanella sediminis HAW-EB3 5614233 YP_001472712.1 CDS purT NC_009831.1 1156025 1157200 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(1156025..1157200) Shewanella sediminis HAW-EB3 5614234 YP_001472713.1 CDS Ssed_0974 NC_009831.1 1157515 1157922 D KEGG: slo:Shew_0889 hypothetical protein; hypothetical protein 1157515..1157922 Shewanella sediminis HAW-EB3 5614235 YP_001472714.1 CDS Ssed_0975 NC_009831.1 1157924 1159060 D KEGG: slo:Shew_0890 secretion protein HlyD family protein; secretion protein HlyD family protein 1157924..1159060 Shewanella sediminis HAW-EB3 5612058 YP_001472715.1 CDS Ssed_0976 NC_009831.1 1159166 1159975 R KEGG: slo:Shew_3770 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(1159166..1159975) Shewanella sediminis HAW-EB3 5612059 YP_001472716.1 CDS Ssed_0977 NC_009831.1 1160332 1161801 D KEGG: slo:Shew_0892 AAA ATPase, central domain protein; ATPase central domain-containing protein 1160332..1161801 Shewanella sediminis HAW-EB3 5612060 YP_001472717.1 CDS Ssed_0978 NC_009831.1 1161907 1162497 R KEGG: shw:Sputw3181_3158 hypothetical protein; hypothetical protein complement(1161907..1162497) Shewanella sediminis HAW-EB3 5612061 YP_001472718.1 CDS Ssed_0979 NC_009831.1 1162552 1162917 D KEGG: slo:Shew_0894 protein of unknown function DUF1289; Fe-S protein-like protein 1162552..1162917 Shewanella sediminis HAW-EB3 5609597 YP_001472719.1 CDS Ssed_0980 NC_009831.1 1163003 1164295 R KEGG: slo:Shew_0895 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1163003..1164295) Shewanella sediminis HAW-EB3 5609598 YP_001472720.1 CDS Ssed_0981 NC_009831.1 1164352 1165065 R KEGG: slo:Shew_0896 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1164352..1165065) Shewanella sediminis HAW-EB3 5609599 YP_001472721.1 CDS Ssed_0982 NC_009831.1 1165065 1165484 R KEGG: slo:Shew_0897 hypothetical protein; hypothetical protein complement(1165065..1165484) Shewanella sediminis HAW-EB3 5609600 YP_001472722.1 CDS Ssed_0983 NC_009831.1 1165490 1166374 R KEGG: slo:Shew_0898 MltA-interacting MipA family protein; MltA-interacting MipA family protein complement(1165490..1166374) Shewanella sediminis HAW-EB3 5610260 YP_001472723.1 CDS Ssed_0984 NC_009831.1 1166673 1167848 D KEGG: slo:Shew_0900 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase 1166673..1167848 Shewanella sediminis HAW-EB3 5610261 YP_001472724.1 CDS Ssed_0985 NC_009831.1 1168034 1169242 R KEGG: slo:Shew_0905 response regulator receiver protein; response regulator receiver protein complement(1168034..1169242) Shewanella sediminis HAW-EB3 5610262 YP_001472725.1 CDS Ssed_0986 NC_009831.1 1169211 1169579 R KEGG: slo:Shew_0906 Hpt protein; Hpt protein complement(1169211..1169579) Shewanella sediminis HAW-EB3 5610263 YP_001472726.1 CDS Ssed_0987 NC_009831.1 1169572 1172388 R KEGG: slo:Shew_0907 PAS/PAC sensor hybrid histidine kinase; histidine kinase complement(1169572..1172388) Shewanella sediminis HAW-EB3 5609887 YP_001472727.1 CDS Ssed_0988 NC_009831.1 1172495 1173385 R KEGG: she:Shewmr4_1103 UspA domain protein; UspA domain-containing protein complement(1172495..1173385) Shewanella sediminis HAW-EB3 5609888 YP_001472728.1 CDS Ssed_0989 NC_009831.1 1173633 1174103 R KEGG: shw:Sputw3181_3150 hypothetical protein; hypothetical protein complement(1173633..1174103) Shewanella sediminis HAW-EB3 5609889 YP_001472729.1 CDS Ssed_0990 NC_009831.1 1174350 1174724 R hypothetical protein complement(1174350..1174724) Shewanella sediminis HAW-EB3 5609890 YP_001472730.1 CDS Ssed_0991 NC_009831.1 1175131 1175370 D KEGG: slo:Shew_0912 hypothetical protein; hypothetical protein 1175131..1175370 Shewanella sediminis HAW-EB3 5609901 YP_001472731.1 CDS Ssed_0992 NC_009831.1 1175561 1175980 R KEGG: slo:Shew_0913 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1175561..1175980) Shewanella sediminis HAW-EB3 5609902 YP_001472732.1 CDS Ssed_0993 NC_009831.1 1176021 1176407 R KEGG: ilo:IL1591 glyoxalase/dioxygenase superfamily protein; glyoxalase/dioxygenase superfamily protein complement(1176021..1176407) Shewanella sediminis HAW-EB3 5609903 YP_001472733.1 CDS Ssed_0994 NC_009831.1 1176429 1177085 R KEGG: slo:Shew_0914 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1176429..1177085) Shewanella sediminis HAW-EB3 5609904 YP_001472734.1 CDS Ssed_0995 NC_009831.1 1177229 1177849 D KEGG: cps:CPS_0091 hypothetical protein; hypothetical protein 1177229..1177849 Shewanella sediminis HAW-EB3 5610216 YP_001472735.1 CDS Ssed_0996 NC_009831.1 1177821 1178564 D KEGG: shw:Sputw3181_3146 pseudouridine synthase; pseudouridine synthase 1177821..1178564 Shewanella sediminis HAW-EB3 5610217 YP_001472736.1 CDS Ssed_0997 NC_009831.1 1178674 1179639 D KEGG: slo:Shew_0917 transcriptional regulator, LysR family; LysR family transcriptional regulator 1178674..1179639 Shewanella sediminis HAW-EB3 5610218 YP_001472737.1 CDS Ssed_0998 NC_009831.1 1179811 1182111 D KEGG: sfr:Sfri_0913 decaheme cytochrome c; decaheme cytochrome c 1179811..1182111 Shewanella sediminis HAW-EB3 5610219 YP_001472738.1 CDS Ssed_0999 NC_009831.1 1182926 1183537 D KEGG: ppr:PBPRA2415 membrane protein; hypothetical protein 1182926..1183537 Shewanella sediminis HAW-EB3 5610053 YP_001472739.1 CDS Ssed_1000 NC_009831.1 1183639 1185171 R KEGG: slo:Shew_0920 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1183639..1185171) Shewanella sediminis HAW-EB3 5610054 YP_001472740.1 CDS Ssed_1001 NC_009831.1 1185661 1186221 D KEGG: vpa:VP1794 hypothetical protein; hypothetical protein 1185661..1186221 Shewanella sediminis HAW-EB3 5610055 YP_001472741.1 CDS Ssed_1002 NC_009831.1 1186394 1189696 D KEGG: sde:Sde_3112 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis protein-like protein 1186394..1189696 Shewanella sediminis HAW-EB3 5610056 YP_001472742.1 CDS Ssed_1003 NC_009831.1 1189876 1190451 R KEGG: ppr:PBPRA1250 hypothetical protein; hypothetical protein complement(1189876..1190451) Shewanella sediminis HAW-EB3 5610061 YP_001472743.1 CDS Ssed_1004 NC_009831.1 1190429 1191241 R KEGG: pin:Ping_2620 hypothetical protein DUF52; hypothetical protein complement(1190429..1191241) Shewanella sediminis HAW-EB3 5610062 YP_001472744.1 CDS Ssed_1005 NC_009831.1 1191313 1192425 D KEGG: slo:Shew_0932 radical SAM domain protein; radical SAM domain-containing protein 1191313..1192425 Shewanella sediminis HAW-EB3 5610063 YP_001472745.1 CDS Ssed_1006 NC_009831.1 1192645 1194366 D KEGG: slo:Shew_0922 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1192645..1194366 Shewanella sediminis HAW-EB3 5610064 YP_001472746.1 CDS Ssed_1007 NC_009831.1 1194734 1196455 D KEGG: slo:Shew_0922 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1194734..1196455 Shewanella sediminis HAW-EB3 5609984 YP_001472747.1 CDS valS NC_009831.1 1196866 1199781 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1196866..1199781) Shewanella sediminis HAW-EB3 5609985 YP_001472748.1 CDS Ssed_1009 NC_009831.1 1199797 1200267 R KEGG: shn:Shewana3_1132 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC complement(1199797..1200267) Shewanella sediminis HAW-EB3 5609986 YP_001472749.1 CDS Ssed_1010 NC_009831.1 1200612 1201754 R KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component; sugar ABC transporter periplasmic protein complement(1200612..1201754) Shewanella sediminis HAW-EB3 5609987 YP_001472750.1 CDS Ssed_1011 NC_009831.1 1203137 1204327 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1203137..1204327 Shewanella sediminis HAW-EB3 5609622 YP_001472751.1 CDS Ssed_1012 NC_009831.1 1204825 1206705 D KEGG: vfi:VF1652 hypothetical protein; hypothetical protein 1204825..1206705 Shewanella sediminis HAW-EB3 5609623 YP_001472752.1 CDS Ssed_1013 NC_009831.1 1206827 1207279 D KEGG: ppr:PBPRB0254 hypothetical protein; hypothetical protein 1206827..1207279 Shewanella sediminis HAW-EB3 5609624 YP_001472753.1 CDS Ssed_1014 NC_009831.1 1207528 1209036 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1207528..1209036) Shewanella sediminis HAW-EB3 5609625 YP_001472754.1 CDS Ssed_1015 NC_009831.1 1209257 1210369 D KEGG: slo:Shew_0940 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1209257..1210369 Shewanella sediminis HAW-EB3 5610368 YP_001472755.1 CDS Ssed_1016 NC_009831.1 1210366 1211424 D KEGG: slo:Shew_0941 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1210366..1211424 Shewanella sediminis HAW-EB3 5610369 YP_001472756.1 CDS Ssed_1017 NC_009831.1 1211567 1212091 R KEGG: slo:Shew_0942 RDD domain containing protein; RDD domain-containing protein complement(1211567..1212091) Shewanella sediminis HAW-EB3 5610370 YP_001472757.1 CDS Ssed_1018 NC_009831.1 1212179 1212436 R KEGG: pha:PSHAa2433 hypothetical protein; hypothetical protein complement(1212179..1212436) Shewanella sediminis HAW-EB3 5610371 YP_001472758.1 CDS Ssed_1019 NC_009831.1 1212556 1213041 R KEGG: slo:Shew_0944 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1212556..1213041) Shewanella sediminis HAW-EB3 5609946 YP_001472759.1 CDS Ssed_1020 NC_009831.1 1213148 1214638 R KEGG: shn:Shewana3_2999 peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq complement(1213148..1214638) Shewanella sediminis HAW-EB3 5609947 YP_001472760.1 CDS Ssed_1021 NC_009831.1 1214819 1215445 R KEGG: slo:Shew_0948 hypothetical protein; hypothetical protein complement(1214819..1215445) Shewanella sediminis HAW-EB3 5609948 YP_001472761.1 CDS Ssed_1022 NC_009831.1 1215527 1216834 R KEGG: slo:Shew_0950 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1215527..1216834) Shewanella sediminis HAW-EB3 5609949 YP_001472762.1 CDS Ssed_1023 NC_009831.1 1217214 1218413 D KEGG: slo:Shew_0951 response regulator receiver modulated diguanylate phosphodiesterase; response regulator receiver modulated diguanylate phosphodiesterase 1217214..1218413 Shewanella sediminis HAW-EB3 5609836 YP_001472763.1 CDS Ssed_1024 NC_009831.1 1218507 1220294 R KEGG: sbl:Sbal_3085 peptidase M24; peptidase M24 complement(1218507..1220294) Shewanella sediminis HAW-EB3 5609837 YP_001472764.1 CDS Ssed_1025 NC_009831.1 1220589 1221785 D KEGG: slo:Shew_0953 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1220589..1221785 Shewanella sediminis HAW-EB3 5609838 YP_001472765.1 CDS Ssed_1026 NC_009831.1 1221879 1222658 D KEGG: sbl:Sbal_3084 ROK family protein; ROK family protein 1221879..1222658 Shewanella sediminis HAW-EB3 5609839 YP_001472766.1 CDS Ssed_1027 NC_009831.1 1223070 1224383 D KEGG: slo:Shew_2784 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 1223070..1224383 Shewanella sediminis HAW-EB3 5610202 YP_001472767.1 CDS Ssed_1028 NC_009831.1 1224666 1225883 D KEGG: slo:Shew_0955 peptidase M24; peptidase M24 1224666..1225883 Shewanella sediminis HAW-EB3 5610203 YP_001472768.1 CDS Ssed_1029 NC_009831.1 1225968 1226438 R KEGG: slo:Shew_0956 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(1225968..1226438) Shewanella sediminis HAW-EB3 5610204 YP_001472769.1 CDS Ssed_1030 NC_009831.1 1226635 1226970 R KEGG: cps:CPS_0148 cold-shock DNA-binding domain family protein; cold shock DNA-binding domain-containing protein complement(1226635..1226970) Shewanella sediminis HAW-EB3 5610205 YP_001472770.1 CDS Ssed_1031 NC_009831.1 1227131 1228426 R KEGG: hch:HCH_06918 signal transduction histidine kinase; Signal transduction histidine kinase-like protein complement(1227131..1228426) Shewanella sediminis HAW-EB3 5610315 YP_001472771.1 CDS Ssed_1032 NC_009831.1 1228423 1229121 R KEGG: hch:HCH_06917 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator complement(1228423..1229121) Shewanella sediminis HAW-EB3 5610316 YP_001472772.1 CDS Ssed_1033 NC_009831.1 1229186 1229560 R KEGG: aha:AHA_1407 hypothetical protein; hypothetical protein complement(1229186..1229560) Shewanella sediminis HAW-EB3 5610317 YP_001472773.1 CDS Ssed_1034 NC_009831.1 1229557 1232217 R KEGG: pat:Patl_0505 PPE-repeat protein; PPE repeat-containing protein complement(1229557..1232217) Shewanella sediminis HAW-EB3 5610318 YP_001472774.1 CDS Ssed_1035 NC_009831.1 1232376 1232858 R KEGG: sdn:Sden_2236 hypothetical protein; hypothetical protein complement(1232376..1232858) Shewanella sediminis HAW-EB3 5613082 YP_001472775.1 CDS Ssed_1036 NC_009831.1 1233026 1233283 D KEGG: slo:Shew_3148 transcriptional regulator, MarR family; MarR family transcriptional regulator 1233026..1233283 Shewanella sediminis HAW-EB3 5613083 YP_001472776.1 CDS Ssed_1037 NC_009831.1 1233285 1233761 R KEGG: saz:Sama_2784 conserved hypothetical protein; hypothetical protein complement(1233285..1233761) Shewanella sediminis HAW-EB3 5613084 YP_001472777.1 CDS Ssed_1038 NC_009831.1 1233988 1234920 D KEGG: slo:Shew_0960 protein of unknown function DUF368; hypothetical protein 1233988..1234920 Shewanella sediminis HAW-EB3 5613085 YP_001472778.1 CDS Ssed_1039 NC_009831.1 1235181 1235525 R KEGG: slo:Shew_0961 hypothetical protein; hypothetical protein complement(1235181..1235525) Shewanella sediminis HAW-EB3 5612830 YP_001472779.1 CDS Ssed_1040 NC_009831.1 1235745 1235927 D KEGG: slo:Shew_0962 hypothetical protein; hypothetical protein 1235745..1235927 Shewanella sediminis HAW-EB3 5612831 YP_001472780.1 CDS Ssed_1041 NC_009831.1 1236002 1236721 R KEGG: slo:Shew_0963 hypothetical protein; hypothetical protein complement(1236002..1236721) Shewanella sediminis HAW-EB3 5612832 YP_001472781.1 CDS Ssed_1042 NC_009831.1 1236859 1237242 R KEGG: slo:Shew_0964 protein of unknown function DUF861, cupin_3; hypothetical protein complement(1236859..1237242) Shewanella sediminis HAW-EB3 5612833 YP_001472782.1 CDS Ssed_1043 NC_009831.1 1237318 1238808 R KEGG: slo:Shew_0965 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1237318..1238808) Shewanella sediminis HAW-EB3 5610174 YP_001472783.1 CDS Ssed_1044 NC_009831.1 1238919 1240256 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(1238919..1240256) Shewanella sediminis HAW-EB3 5610175 YP_001472784.1 CDS Ssed_1045 NC_009831.1 1240591 1242102 D KEGG: slo:Shew_0967 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 1240591..1242102 Shewanella sediminis HAW-EB3 5610176 YP_001472785.1 CDS Ssed_1046 NC_009831.1 1242162 1243388 R KEGG: she:Shewmr4_0147 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1242162..1243388) Shewanella sediminis HAW-EB3 5610177 YP_001472786.1 CDS Ssed_1047 NC_009831.1 1243683 1244459 R KEGG: cps:CPS_4645 hypothetical protein; hypothetical protein complement(1243683..1244459) Shewanella sediminis HAW-EB3 5612031 YP_001472787.1 CDS Ssed_1048 NC_009831.1 1244631 1245536 R catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase complement(1244631..1245536) Shewanella sediminis HAW-EB3 5612032 YP_001472788.1 CDS rihA NC_009831.1 1245613 1246551 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 complement(1245613..1246551) Shewanella sediminis HAW-EB3 5612033 YP_001472789.1 CDS Ssed_1050 NC_009831.1 1246820 1247377 D KEGG: ppr:PBPRB0776 adenylate cyclase CyaB; adenylate cyclase 1246820..1247377 Shewanella sediminis HAW-EB3 5612034 YP_001472790.1 CDS Ssed_1051 NC_009831.1 1247932 1248639 D hypothetical protein 1247932..1248639 Shewanella sediminis HAW-EB3 5613559 YP_001472791.1 CDS Ssed_1052 NC_009831.1 1248771 1249175 D KEGG: sfr:Sfri_1576 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1248771..1249175 Shewanella sediminis HAW-EB3 5613560 YP_001472792.1 CDS Ssed_1053 NC_009831.1 1249406 1249828 D KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1249406..1249828 Shewanella sediminis HAW-EB3 5613561 YP_001472793.1 CDS Ssed_1054 NC_009831.1 1250507 1250902 D KEGG: cps:CPS_2741 hypothetical protein; hypothetical protein 1250507..1250902 Shewanella sediminis HAW-EB3 5613562 YP_001472794.1 CDS Ssed_1055 NC_009831.1 1251028 1251264 D KEGG: ilo:IL1812 hypothetical protein; hypothetical protein 1251028..1251264 Shewanella sediminis HAW-EB3 5612942 YP_001472795.1 CDS Ssed_1056 NC_009831.1 1251364 1251711 D hypothetical protein 1251364..1251711 Shewanella sediminis HAW-EB3 5612943 YP_001472796.1 CDS Ssed_1057 NC_009831.1 1252352 1253659 R KEGG: slo:Shew_0969 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1252352..1253659) Shewanella sediminis HAW-EB3 5612944 YP_001472797.1 CDS Ssed_1058 NC_009831.1 1253857 1254411 D KEGG: shn:Shewana3_3100 transcriptional regulator, XRE family; XRE family transcriptional regulator 1253857..1254411 Shewanella sediminis HAW-EB3 5612945 YP_001472798.1 CDS Ssed_1059 NC_009831.1 1255231 1255992 D KEGG: slo:Shew_0971 peptidase C26; peptidase C26 1255231..1255992 Shewanella sediminis HAW-EB3 5610131 YP_001472799.1 CDS Ssed_1060 NC_009831.1 1255995 1257344 D KEGG: slo:Shew_0972 glutamate--ammonia ligase; glutamate--putrescine ligase 1255995..1257344 Shewanella sediminis HAW-EB3 5610132 YP_001472800.1 CDS Ssed_1061 NC_009831.1 1257662 1258762 D KEGG: slo:Shew_0973 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1257662..1258762 Shewanella sediminis HAW-EB3 5610133 YP_001472801.1 CDS Ssed_1062 NC_009831.1 1258838 1260001 D KEGG: slo:Shew_0974 spermidine/putrescine ABC transporter ATPase subunit; spermidine/putrescine ABC transporter ATPase 1258838..1260001 Shewanella sediminis HAW-EB3 5610134 YP_001472802.1 CDS Ssed_1063 NC_009831.1 1260013 1260918 D KEGG: slo:Shew_0975 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1260013..1260918 Shewanella sediminis HAW-EB3 5613175 YP_001472803.1 CDS Ssed_1064 NC_009831.1 1260915 1261742 D KEGG: slo:Shew_0976 binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 1260915..1261742 Shewanella sediminis HAW-EB3 5613176 YP_001472804.1 CDS Ssed_1065 NC_009831.1 1261914 1263200 D KEGG: slo:Shew_0977 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1261914..1263200 Shewanella sediminis HAW-EB3 5613177 YP_001472805.1 CDS Ssed_1066 NC_009831.1 1263449 1265566 D KEGG: shn:Shewana3_3088 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1263449..1265566 Shewanella sediminis HAW-EB3 5613178 YP_001472806.1 CDS Ssed_1067 NC_009831.1 1265710 1267503 D KEGG: bra:BRADO5800 glutamate synthase (NADPH); 2-ketoglutarate: NADP oxidoreductase, gamma subunit (KorC-like); glutamate synthase 1265710..1267503 Shewanella sediminis HAW-EB3 5613040 YP_001472807.1 CDS Ssed_1068 NC_009831.1 1267500 1269329 D KEGG: eba:ebA4588 2-ketoglutarate: NADP oxidoreductase, alpha subunit; 2-ketoglutarate: NADP oxidoreductase subunit alpha 1267500..1269329 Shewanella sediminis HAW-EB3 5613041 YP_001472808.1 CDS Ssed_1069 NC_009831.1 1269405 1270457 D catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1269405..1270457 Shewanella sediminis HAW-EB3 5613042 YP_001472809.1 CDS Ssed_1070 NC_009831.1 1270587 1271285 R hypothetical protein complement(1270587..1271285) Shewanella sediminis HAW-EB3 5613043 YP_001472810.1 CDS Ssed_1071 NC_009831.1 1272113 1272535 R KEGG: tbd:Tbd_1574 hypothetical protein; hypothetical protein complement(1272113..1272535) Shewanella sediminis HAW-EB3 5613020 YP_001472811.1 CDS Ssed_1072 NC_009831.1 1273107 1274945 R KEGG: slo:Shew_0996 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor complement(1273107..1274945) Shewanella sediminis HAW-EB3 5610993 YP_001472812.1 CDS Ssed_1073 NC_009831.1 1275068 1276789 R KEGG: slo:Shew_0997 DNA primase; DNA primase complement(1275068..1276789) Shewanella sediminis HAW-EB3 5613022 YP_001472813.1 CDS Ssed_1074 NC_009831.1 1276887 1277330 R KEGG: slo:Shew_0998 GatB/YqeY domain protein; GatB/YqeY domain-containing protein complement(1276887..1277330) Shewanella sediminis HAW-EB3 5613023 YP_001472814.1 CDS rpsU NC_009831.1 1277337 1277552 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1277337..1277552) Shewanella sediminis HAW-EB3 5612996 YP_001472815.1 CDS Ssed_1076 NC_009831.1 1277942 1278955 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1277942..1278955 Shewanella sediminis HAW-EB3 5612997 YP_001472816.1 CDS Ssed_1077 NC_009831.1 1279100 1279702 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY complement(1279100..1279702) Shewanella sediminis HAW-EB3 5612998 YP_001472817.1 CDS Ssed_1078 NC_009831.1 1280011 1280364 D KEGG: slo:Shew_1002 dihydroneopterin aldolase; dihydroneopterin aldolase 1280011..1280364 Shewanella sediminis HAW-EB3 5612999 YP_001472818.1 CDS Ssed_1079 NC_009831.1 1280365 1280862 D KEGG: slo:Shew_1003 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1280365..1280862 Shewanella sediminis HAW-EB3 5612899 YP_001472819.1 CDS Ssed_1080 NC_009831.1 1280961 1281761 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 1280961..1281761 Shewanella sediminis HAW-EB3 5612900 YP_001472820.1 CDS Ssed_1081 NC_009831.1 1281820 1282716 D KEGG: slo:Shew_1005 rRNA (guanine-N(1)-)-methyltransferase; rRNA (guanine-N(1)-)-methyltransferase 1281820..1282716 Shewanella sediminis HAW-EB3 5612901 YP_001472821.1 CDS Ssed_1082 NC_009831.1 1282834 1283835 D KEGG: slo:Shew_1006 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1282834..1283835 Shewanella sediminis HAW-EB3 5612902 YP_001472822.1 CDS Ssed_1083 NC_009831.1 1284101 1284367 R KEGG: slo:Shew_1007 major outer membrane lipoprotein; major outer membrane lipoprotein complement(1284101..1284367) Shewanella sediminis HAW-EB3 5612601 YP_001472823.1 CDS Ssed_1084 NC_009831.1 1284578 1285819 R KEGG: sbl:Sbal_1155 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1284578..1285819) Shewanella sediminis HAW-EB3 5612602 YP_001472824.1 CDS Ssed_1085 NC_009831.1 1286031 1287656 D KEGG: slo:Shew_1009 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein 1286031..1287656 Shewanella sediminis HAW-EB3 5612603 YP_001472825.1 CDS Ssed_1086 NC_009831.1 1287656 1288675 D KEGG: slo:Shew_1010 general secretion pathway protein B; general secretion pathway protein B 1287656..1288675 Shewanella sediminis HAW-EB3 5612604 YP_001472826.1 CDS Ssed_1087 NC_009831.1 1288749 1289996 R KEGG: shw:Sputw3181_3046 citrate transporter; citrate transporter complement(1288749..1289996) Shewanella sediminis HAW-EB3 5612421 YP_001472827.1 CDS Ssed_1088 NC_009831.1 1290554 1291840 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1290554..1291840) Shewanella sediminis HAW-EB3 5612422 YP_001472828.1 CDS Ssed_1089 NC_009831.1 1291868 1292887 R Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase complement(1291868..1292887) Shewanella sediminis HAW-EB3 5612423 YP_001472829.1 CDS Ssed_1090 NC_009831.1 1293325 1293828 D hypothetical protein 1293325..1293828 Shewanella sediminis HAW-EB3 5612424 YP_001472830.1 CDS aspA NC_009831.1 1294091 1295548 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1294091..1295548 Shewanella sediminis HAW-EB3 5612177 YP_001472831.1 CDS Ssed_1092 NC_009831.1 1295679 1296239 R KEGG: shw:Sputw3181_0453 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(1295679..1296239) Shewanella sediminis HAW-EB3 5612178 YP_001472832.1 CDS Ssed_1093 NC_009831.1 1296854 1298563 R KEGG: slo:Shew_1015 Cl-channel, voltage-gated family protein; Cl-channel, voltage-gated family protein complement(1296854..1298563) Shewanella sediminis HAW-EB3 5612179 YP_001472833.1 CDS Ssed_1094 NC_009831.1 1298660 1299499 D KEGG: slo:Shew_1016 hypothetical protein; hypothetical protein 1298660..1299499 Shewanella sediminis HAW-EB3 5612180 YP_001472834.1 CDS Ssed_1095 NC_009831.1 1299626 1299988 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1299626..1299988 Shewanella sediminis HAW-EB3 5612254 YP_001472835.1 CDS Ssed_1096 NC_009831.1 1300071 1300589 R KEGG: slo:Shew_1018 hypothetical protein; hypothetical protein complement(1300071..1300589) Shewanella sediminis HAW-EB3 5612255 YP_001472836.1 CDS Ssed_1097 NC_009831.1 1300601 1300972 R KEGG: slo:Shew_1019 hypothetical protein; hypothetical protein complement(1300601..1300972) Shewanella sediminis HAW-EB3 5612256 YP_001472837.1 CDS Ssed_1098 NC_009831.1 1301267 1302688 R KEGG: vpa:VPA1073 alkaline phosphatase; alkaline phosphatase complement(1301267..1302688) Shewanella sediminis HAW-EB3 5612257 YP_001472838.1 CDS Ssed_1099 NC_009831.1 1302713 1305289 R KEGG: shn:Shewana3_3062 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(1302713..1305289) Shewanella sediminis HAW-EB3 5612101 YP_001472839.1 CDS Ssed_1100 NC_009831.1 1305410 1308178 R KEGG: vvy:VV0250 outer membrane receptor protein; outer membrane receptor protein complement(1305410..1308178) Shewanella sediminis HAW-EB3 5612102 YP_001472840.1 CDS Ssed_1101 NC_009831.1 1308533 1310674 D KEGG: shm:Shewmr7_2965 transcriptional regulator domain protein; transcriptional regulator domain-containing protein 1308533..1310674 Shewanella sediminis HAW-EB3 5612103 YP_001472841.1 CDS anmK NC_009831.1 1311098 1312207 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1311098..1312207) Shewanella sediminis HAW-EB3 5612104 YP_001472842.1 CDS Ssed_1103 NC_009831.1 1312362 1313789 R KEGG: slo:Shew_1021 peptidase M23B; peptidase M23B complement(1312362..1313789) Shewanella sediminis HAW-EB3 5612148 YP_001472843.1 CDS Ssed_1104 NC_009831.1 1313930 1315126 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1313930..1315126 Shewanella sediminis HAW-EB3 5612149 YP_001472844.1 CDS Ssed_1105 NC_009831.1 1315279 1316913 R KEGG: cps:CPS_3369 proton/peptide symporter family protein; alkaline phosphatase complement(1315279..1316913) Shewanella sediminis HAW-EB3 5612150 YP_001472845.1 CDS Ssed_1106 NC_009831.1 1317485 1319014 R KEGG: sil:SPOA0154 hypothetical protein; hypothetical protein complement(1317485..1319014) Shewanella sediminis HAW-EB3 5612151 YP_001472846.1 CDS Ssed_1107 NC_009831.1 1319016 1320269 R KEGG: sil:SPOA0152 di-haem cytochrome c peroxidase family protein; cytochrome-c peroxidase complement(1319016..1320269) Shewanella sediminis HAW-EB3 5611906 YP_001472847.1 CDS Ssed_1108 NC_009831.1 1320278 1321024 R KEGG: pat:Patl_1721 cytochrome c, class I; hypothetical protein complement(1320278..1321024) Shewanella sediminis HAW-EB3 5611907 YP_001472848.1 CDS Ssed_1109 NC_009831.1 1321140 1322198 R KEGG: bja:blr0814 transcriptional regulatory protein; hypothetical protein complement(1321140..1322198) Shewanella sediminis HAW-EB3 5611908 YP_001472849.1 CDS Ssed_1110 NC_009831.1 1322401 1324989 R KEGG: mmr:Mmar10_1982 TonB-dependent receptor, plug; Outer membrane receptor protein mostly Fe transport-like protein complement(1322401..1324989) Shewanella sediminis HAW-EB3 5611909 YP_001472850.1 CDS Ssed_1111 NC_009831.1 1325454 1325933 R KEGG: slo:Shew_1023 hypothetical protein; hypothetical protein complement(1325454..1325933) Shewanella sediminis HAW-EB3 5611844 YP_001472851.1 CDS Ssed_1112 NC_009831.1 1325930 1326556 R KEGG: slo:Shew_1024 protein of unknown function UPF0126; hypothetical protein complement(1325930..1326556) Shewanella sediminis HAW-EB3 5611845 YP_001472852.1 CDS Ssed_1113 NC_009831.1 1326553 1326993 R KEGG: slo:Shew_1025 hypothetical protein; hypothetical protein complement(1326553..1326993) Shewanella sediminis HAW-EB3 5611846 YP_001472853.1 CDS Ssed_1114 NC_009831.1 1327060 1328043 R KEGG: spc:Sputcn32_1133 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB complement(1327060..1328043) Shewanella sediminis HAW-EB3 5611847 YP_001472854.1 CDS Ssed_1115 NC_009831.1 1328071 1328763 R KEGG: shn:Shewana3_3052 purine and other phosphorylases, family 1; adenosylhomocysteine nucleosidase complement(1328071..1328763) Shewanella sediminis HAW-EB3 5611595 YP_001472855.1 CDS Ssed_1116 NC_009831.1 1329077 1330384 D KEGG: vfi:VFA0056 hypothetical protein; hypothetical protein 1329077..1330384 Shewanella sediminis HAW-EB3 5611596 YP_001472856.1 CDS Ssed_1117 NC_009831.1 1330518 1331222 R KEGG: sfr:Sfri_1944 hypothetical protein; hypothetical protein complement(1330518..1331222) Shewanella sediminis HAW-EB3 5611597 YP_001472857.1 CDS Ssed_1118 NC_009831.1 1331241 1332458 R KEGG: sfr:Sfri_1945 transporter, BCCT family protein; transporter, BCCT family protein complement(1331241..1332458) Shewanella sediminis HAW-EB3 5611598 YP_001472858.1 CDS Ssed_1119 NC_009831.1 1332689 1334383 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(1332689..1334383) Shewanella sediminis HAW-EB3 5611607 YP_001472859.1 CDS Ssed_1120 NC_009831.1 1334393 1335856 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(1334393..1335856) Shewanella sediminis HAW-EB3 5611608 YP_001472860.1 CDS Ssed_1121 NC_009831.1 1335847 1336452 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(1335847..1336452) Shewanella sediminis HAW-EB3 5611609 YP_001472861.1 CDS Ssed_1122 NC_009831.1 1337070 1338044 D KEGG: sfr:Sfri_3408 inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 1337070..1338044 Shewanella sediminis HAW-EB3 5611610 YP_001472862.1 CDS Ssed_1123 NC_009831.1 1338557 1338895 R KEGG: ppr:PBPRB1305 hypothetical protein; hypothetical protein complement(1338557..1338895) Shewanella sediminis HAW-EB3 5612650 YP_001472863.1 CDS Ssed_1124 NC_009831.1 1339388 1340599 R KEGG: sfr:Sfri_3407 ribokinase; ribokinase complement(1339388..1340599) Shewanella sediminis HAW-EB3 5612651 YP_001472864.1 CDS gltD NC_009831.1 1340857 1342266 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1340857..1342266) Shewanella sediminis HAW-EB3 5612652 YP_001472865.1 CDS gltB NC_009831.1 1342273 1346721 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(1342273..1346721) Shewanella sediminis HAW-EB3 5612653 YP_001472866.1 CDS Ssed_1127 NC_009831.1 1347232 1348158 D KEGG: slo:Shew_1033 conserved hypothetical radical SAM protein; radical SAM protein 1347232..1348158 Shewanella sediminis HAW-EB3 5611482 YP_001472867.1 CDS Ssed_1128 NC_009831.1 1348333 1348698 D KEGG: slo:Shew_1034 Hpt protein; Hpt protein 1348333..1348698 Shewanella sediminis HAW-EB3 5611483 YP_001472868.1 CDS Ssed_1129 NC_009831.1 1349006 1349917 D KEGG: slo:Shew_1035 transcriptional regulator, LysR family; LysR family transcriptional regulator 1349006..1349917 Shewanella sediminis HAW-EB3 5611484 YP_001472869.1 CDS Ssed_1130 NC_009831.1 1350023 1351096 R KEGG: sbl:Sbal_1182 adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(1350023..1351096) Shewanella sediminis HAW-EB3 5611485 YP_001472870.1 CDS Ssed_1131 NC_009831.1 1351390 1352064 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(1351390..1352064) Shewanella sediminis HAW-EB3 5613766 YP_001472871.1 CDS Ssed_1132 NC_009831.1 1352758 1353276 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1352758..1353276 Shewanella sediminis HAW-EB3 5613767 YP_001472872.1 CDS Ssed_1133 NC_009831.1 1353349 1355583 D KEGG: slo:Shew_1039 PTSINtr with GAF domain, PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 1353349..1355583 Shewanella sediminis HAW-EB3 5613768 YP_001472873.1 CDS Ssed_1134 NC_009831.1 1355690 1356493 D KEGG: sbl:Sbal_1186 protein of unknown function DUF81; hypothetical protein 1355690..1356493 Shewanella sediminis HAW-EB3 5613769 YP_001472874.1 CDS thyA NC_009831.1 1356653 1357504 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1356653..1357504 Shewanella sediminis HAW-EB3 5610247 YP_001472875.1 CDS nhaA NC_009831.1 1357815 1359014 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1357815..1359014 Shewanella sediminis HAW-EB3 5610248 YP_001472876.1 CDS Ssed_1137 NC_009831.1 1359011 1359394 D KEGG: slo:Shew_1043 hypothetical protein; hypothetical protein 1359011..1359394 Shewanella sediminis HAW-EB3 5610249 YP_001472877.1 CDS nhaR NC_009831.1 1359421 1360329 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 1359421..1360329 Shewanella sediminis HAW-EB3 5610250 YP_001472878.1 CDS Ssed_1139 NC_009831.1 1360387 1360638 D KEGG: slo:Shew_1045 protein of unknown function DUF339; hypothetical protein 1360387..1360638 Shewanella sediminis HAW-EB3 5613794 YP_001472879.1 CDS Ssed_1140 NC_009831.1 1360619 1361050 D KEGG: sbl:Sbal_1193 hypothetical protein; hypothetical protein 1360619..1361050 Shewanella sediminis HAW-EB3 5613795 YP_001472880.1 CDS Ssed_1141 NC_009831.1 1361107 1362717 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1361107..1362717) Shewanella sediminis HAW-EB3 5613796 YP_001472881.1 CDS Ssed_1142 NC_009831.1 1362918 1363496 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1362918..1363496 Shewanella sediminis HAW-EB3 5613797 YP_001472882.1 CDS Ssed_1143 NC_009831.1 1363524 1364144 D KEGG: slo:Shew_1049 anti sigma-E protein, RseA; anti sigma-E protein, RseA 1363524..1364144 Shewanella sediminis HAW-EB3 5610975 YP_001472883.1 CDS Ssed_1144 NC_009831.1 1364174 1365106 D KEGG: slo:Shew_1050 sigma E regulatory protein, MucB/RseB; sigma E regulatory protein MucB/RseB 1364174..1365106 Shewanella sediminis HAW-EB3 5610976 YP_001472884.1 CDS Ssed_1145 NC_009831.1 1365131 1365586 D KEGG: slo:Shew_1051 positive regulator of sigma E, RseC/MucC; sigma E positive regulator RseC/MucC 1365131..1365586 Shewanella sediminis HAW-EB3 5610977 YP_001472885.1 CDS Ssed_1146 NC_009831.1 1365715 1367505 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1365715..1367505 Shewanella sediminis HAW-EB3 5610978 YP_001472886.1 CDS Ssed_1147 NC_009831.1 1367673 1368590 D KEGG: slo:Shew_1053 signal peptidase I; Signal peptidase I 1367673..1368590 Shewanella sediminis HAW-EB3 5610296 YP_001472887.1 CDS rnc NC_009831.1 1368592 1369269 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1368592..1369269 Shewanella sediminis HAW-EB3 5610297 YP_001472888.1 CDS era NC_009831.1 1369266 1370273 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1369266..1370273 Shewanella sediminis HAW-EB3 5610298 YP_001472889.1 CDS Ssed_1150 NC_009831.1 1370385 1371065 D KEGG: slo:Shew_1056 DNA repair protein RecO; DNA repair protein RecO 1370385..1371065 Shewanella sediminis HAW-EB3 5610299 YP_001472890.1 CDS Ssed_1151 NC_009831.1 1371193 1371930 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1371193..1371930 Shewanella sediminis HAW-EB3 5610372 YP_001472891.1 CDS acpS NC_009831.1 1372006 1372404 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1372006..1372404 Shewanella sediminis HAW-EB3 5610373 YP_001472892.1 CDS Ssed_1153 NC_009831.1 1373377 1373601 D KEGG: vvu:VV1_2415 probable riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein RibD 1373377..1373601 Shewanella sediminis HAW-EB3 5610374 YP_001472893.1 CDS Ssed_1154 NC_009831.1 1373792 1374814 R KEGG: ppu:PP_4405 sensory box protein; sensory box protein complement(1373792..1374814) Shewanella sediminis HAW-EB3 5609876 YP_001472894.1 CDS Ssed_1155 NC_009831.1 1375082 1375627 D KEGG: slo:Shew_1059 protein of unknown function DUF962; hypothetical protein 1375082..1375627 Shewanella sediminis HAW-EB3 5609877 YP_001472895.1 CDS Ssed_1156 NC_009831.1 1375764 1377059 R KEGG: slo:Shew_1060 protein of unknown function DUF21; hypothetical protein complement(1375764..1377059) Shewanella sediminis HAW-EB3 5609878 YP_001472896.1 CDS Ssed_1157 NC_009831.1 1377246 1378034 R KEGG: slo:Shew_1061 cytochrome c assembly protein; cytochrome c assembly protein complement(1377246..1378034) Shewanella sediminis HAW-EB3 5609879 YP_001472897.1 CDS Ssed_1158 NC_009831.1 1378460 1379833 D with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 1378460..1379833 Shewanella sediminis HAW-EB3 5614037 YP_001472898.1 CDS rpsP NC_009831.1 1380135 1380386 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1380135..1380386 Shewanella sediminis HAW-EB3 5614038 YP_001472899.1 CDS rimM NC_009831.1 1380407 1380937 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1380407..1380937 Shewanella sediminis HAW-EB3 5614039 YP_001472900.1 CDS trmD NC_009831.1 1380953 1381681 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1380953..1381681 Shewanella sediminis HAW-EB3 5614040 YP_001472901.1 CDS rplS NC_009831.1 1381735 1382088 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1381735..1382088 Shewanella sediminis HAW-EB3 5613818 YP_001472902.1 CDS Ssed_1163 NC_009831.1 1382435 1383526 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1382435..1383526 Shewanella sediminis HAW-EB3 5613819 YP_001472903.1 CDS tyrA NC_009831.1 1383603 1384742 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1383603..1384742 Shewanella sediminis HAW-EB3 5613820 YP_001472904.1 CDS Ssed_1165 NC_009831.1 1385259 1386917 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1385259..1386917 Shewanella sediminis HAW-EB3 5614052 YP_001472905.1 CDS Ssed_1166 NC_009831.1 1387039 1388142 D KEGG: slo:Shew_1070 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1387039..1388142 Shewanella sediminis HAW-EB3 5614053 YP_001472906.1 CDS Ssed_1167 NC_009831.1 1388253 1388588 D KEGG: son:SO1365 hypothetical protein; hypothetical protein 1388253..1388588 Shewanella sediminis HAW-EB3 5614054 YP_001472907.1 CDS Ssed_1168 NC_009831.1 1388645 1390633 R KEGG: slo:Shew_1072 chorismate mutase; chorismate mutase complement(1388645..1390633) Shewanella sediminis HAW-EB3 5614055 YP_001472908.1 CDS Ssed_1169 NC_009831.1 1391688 1392050 R KEGG: son:SO3422 ribosomal subunit interface protein; ribosomal subunit interface protein complement(1391688..1392050) Shewanella sediminis HAW-EB3 5612144 YP_001472909.1 CDS Ssed_1170 NC_009831.1 1392341 1393009 D KEGG: she:Shewmr4_1133 cytochrome b561; cytochrome b561 1392341..1393009 Shewanella sediminis HAW-EB3 5612145 YP_001472910.1 CDS Ssed_1171 NC_009831.1 1393127 1393588 R KEGG: slo:Shew_1075 cytochrome c, class II; cytochrome c, class II complement(1393127..1393588) Shewanella sediminis HAW-EB3 5612146 YP_001472911.1 CDS Ssed_1172 NC_009831.1 1393827 1394105 D KEGG: slo:Shew_1076 Trp operon repressor; Trp operon repressor 1393827..1394105 Shewanella sediminis HAW-EB3 5612147 YP_001472912.1 CDS Ssed_1173 NC_009831.1 1394109 1394495 R KEGG: son:SO3418 hypothetical protein; hypothetical protein complement(1394109..1394495) Shewanella sediminis HAW-EB3 5611501 YP_001472913.1 CDS Ssed_1174 NC_009831.1 1394678 1395307 R KEGG: slo:Shew_1078 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(1394678..1395307) Shewanella sediminis HAW-EB3 5611502 YP_001472914.1 CDS thrA NC_009831.1 1396031 1398496 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1396031..1398496 Shewanella sediminis HAW-EB3 5611503 YP_001472915.1 CDS Ssed_1176 NC_009831.1 1398493 1399431 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1398493..1399431 Shewanella sediminis HAW-EB3 5612312 YP_001472916.1 CDS Ssed_1177 NC_009831.1 1399502 1400782 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1399502..1400782 Shewanella sediminis HAW-EB3 5612313 YP_001472917.1 CDS Ssed_1178 NC_009831.1 1401318 1401611 D KEGG: sbl:Sbal_1230 hypothetical protein; hypothetical protein 1401318..1401611 Shewanella sediminis HAW-EB3 5612314 YP_001472918.1 CDS Ssed_1179 NC_009831.1 1401699 1402559 R KEGG: slo:Shew_1083 apurinic endonuclease Apn1; deoxyribonuclease IV (phage-T(4)-induced) complement(1401699..1402559) Shewanella sediminis HAW-EB3 5612315 YP_001472919.1 CDS Ssed_1180 NC_009831.1 1402674 1404752 D KEGG: slo:Shew_1084 PAS/PAC sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase 1402674..1404752 Shewanella sediminis HAW-EB3 5612316 YP_001472920.1 CDS Ssed_1181 NC_009831.1 1404834 1405928 D KEGG: slo:Shew_1085 response regulator receiver protein; response regulator receiver protein 1404834..1405928 Shewanella sediminis HAW-EB3 5612317 YP_001472921.1 CDS Ssed_1182 NC_009831.1 1406065 1406610 D KEGG: shw:Sputw3181_3119 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 1406065..1406610 Shewanella sediminis HAW-EB3 5612318 YP_001472922.1 CDS Ssed_1183 NC_009831.1 1406905 1407090 R KEGG: slo:Shew_1087 hypothetical protein; hypothetical protein complement(1406905..1407090) Shewanella sediminis HAW-EB3 5612319 YP_001472923.1 CDS pgi NC_009831.1 1407316 1408953 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1407316..1408953) Shewanella sediminis HAW-EB3 5612298 YP_001472924.1 CDS Ssed_1185 NC_009831.1 1408967 1409923 R KEGG: slo:Shew_1089 transaldolase; transaldolase B complement(1408967..1409923) Shewanella sediminis HAW-EB3 5612299 YP_001472925.1 CDS Ssed_1186 NC_009831.1 1410491 1412857 R KEGG: sbl:Sbal_1046 phosphoketolase; phosphoketolase complement(1410491..1412857) Shewanella sediminis HAW-EB3 5612300 YP_001472926.1 CDS Ssed_1187 NC_009831.1 1413288 1414739 D KEGG: slo:Shew_1092 amino acid carrier protein; amino acid carrier protein 1413288..1414739 Shewanella sediminis HAW-EB3 5612692 YP_001472927.1 CDS Ssed_1188 NC_009831.1 1414875 1415648 D KEGG: slo:Shew_1093 protein of unknown function DUF328; hypothetical protein 1414875..1415648 Shewanella sediminis HAW-EB3 5612693 YP_001472928.1 CDS Ssed_1189 NC_009831.1 1415748 1417181 R KEGG: slo:Shew_1094 peptidase M28; peptidase M28 complement(1415748..1417181) Shewanella sediminis HAW-EB3 5612694 YP_001472929.1 CDS Ssed_1190 NC_009831.1 1417317 1417613 D KEGG: slo:Shew_1095 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1417317..1417613 Shewanella sediminis HAW-EB3 5612695 YP_001472930.1 CDS rpsT NC_009831.1 1417753 1418019 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1417753..1418019) Shewanella sediminis HAW-EB3 5613821 YP_001472931.1 CDS Ssed_1192 NC_009831.1 1418267 1419826 D KEGG: slo:Shew_1097 integral membrane protein MviN; integral membrane protein MviN 1418267..1419826 Shewanella sediminis HAW-EB3 5613822 YP_001472932.1 CDS Ssed_1193 NC_009831.1 1419924 1420859 D KEGG: slo:Shew_1098 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1419924..1420859 Shewanella sediminis HAW-EB3 5613823 YP_001472933.1 CDS ileS NC_009831.1 1420891 1423713 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1420891..1423713 Shewanella sediminis HAW-EB3 5613824 YP_001472934.1 CDS lspA NC_009831.1 1423851 1424381 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1423851..1424381 Shewanella sediminis HAW-EB3 5613194 YP_001472935.1 CDS Ssed_1196 NC_009831.1 1424387 1424809 D KEGG: slo:Shew_1101 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 1424387..1424809 Shewanella sediminis HAW-EB3 5613195 YP_001472936.1 CDS ispH NC_009831.1 1424813 1425760 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1424813..1425760 Shewanella sediminis HAW-EB3 5613196 YP_001472937.1 CDS Ssed_1198 NC_009831.1 1426002 1426523 D KEGG: slo:Shew_1103 type IV pilus modification protein PilV; type IV pilus modification protein PilV 1426002..1426523 Shewanella sediminis HAW-EB3 5612627 YP_001472938.1 CDS Ssed_1199 NC_009831.1 1426524 1427510 D KEGG: shn:Shewana3_3131 prepilin-type cleavage/methylation-like protein; prepilin-type cleavage/methylation-like protein 1426524..1427510 Shewanella sediminis HAW-EB3 5612628 YP_001472939.1 CDS Ssed_1200 NC_009831.1 1427523 1427957 D KEGG: slo:Shew_1105 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX 1427523..1427957 Shewanella sediminis HAW-EB3 5612629 YP_001472940.1 CDS Ssed_1201 NC_009831.1 1427962 1431537 D KEGG: slo:Shew_1106 type IV pilin biogenesis protein; type IV pilin biogenesis protein 1427962..1431537 Shewanella sediminis HAW-EB3 5612630 YP_001472941.1 CDS Ssed_1202 NC_009831.1 1431537 1431929 D KEGG: saz:Sama_0932 type IV pilus biogenesis protein PilE; type IV pilus biogenesis protein PilE 1431537..1431929 Shewanella sediminis HAW-EB3 5611618 YP_001472942.1 CDS Ssed_1203 NC_009831.1 1431926 1432228 D KEGG: shm:Shewmr7_3030 hypothetical protein; hypothetical protein 1431926..1432228 Shewanella sediminis HAW-EB3 5611619 YP_001472943.1 CDS Ssed_1204 NC_009831.1 1432491 1432979 R KEGG: slo:Shew_1108 methylation site containing protein; methylation site containing protein complement(1432491..1432979) Shewanella sediminis HAW-EB3 5611620 YP_001472944.1 CDS Ssed_1205 NC_009831.1 1433115 1433624 R KEGG: slo:Shew_1109 type IV pilus biogenesis protein; type IV pilus biogenesis protein complement(1433115..1433624) Shewanella sediminis HAW-EB3 5611621 YP_001472945.1 CDS Ssed_1206 NC_009831.1 1433874 1434212 D KEGG: saz:Sama_0935 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 1433874..1434212 Shewanella sediminis HAW-EB3 5613566 YP_001472946.1 CDS Ssed_1207 NC_009831.1 1434292 1435311 R KEGG: saz:Sama_0937 transcriptional regulator, LacI family; alanine racemase complement(1434292..1435311) Shewanella sediminis HAW-EB3 5613567 YP_001472947.1 CDS Ssed_1208 NC_009831.1 1435747 1438359 D KEGG: slo:Shew_1112 TonB-dependent receptor; TonB-dependent receptor 1435747..1438359 Shewanella sediminis HAW-EB3 5613568 YP_001472948.1 CDS Ssed_1209 NC_009831.1 1438522 1440048 D KEGG: slo:Shew_1113 tryptophan halogenase; tryptophan halogenase 1438522..1440048 Shewanella sediminis HAW-EB3 5614016 YP_001472949.1 CDS Ssed_1210 NC_009831.1 1440127 1440846 R KEGG: slo:Shew_1114 SapC family protein; SapC family protein complement(1440127..1440846) Shewanella sediminis HAW-EB3 5614017 YP_001472950.1 CDS Ssed_1211 NC_009831.1 1441694 1444360 D KEGG: slo:Shew_1115 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 1441694..1444360 Shewanella sediminis HAW-EB3 5614018 YP_001472951.1 CDS Ssed_1212 NC_009831.1 1444582 1445478 D KEGG: slo:Shew_1116 ATPase, BadF/BadG/BcrA/BcrD type; BadF/BadG/BcrA/BcrD type ATPase 1444582..1445478 Shewanella sediminis HAW-EB3 5614019 YP_001472952.1 CDS Ssed_1213 NC_009831.1 1445506 1446633 D KEGG: shw:Sputw3181_3087 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1445506..1446633 Shewanella sediminis HAW-EB3 5611309 YP_001472953.1 CDS Ssed_1214 NC_009831.1 1446738 1447874 D KEGG: shm:Shewmr7_3014 hypothetical protein; hypothetical protein 1446738..1447874 Shewanella sediminis HAW-EB3 5611310 YP_001472954.1 CDS Ssed_1215 NC_009831.1 1448119 1449423 D KEGG: slo:Shew_1119 glucose/galactose transporter; glucose/galactose transporter 1448119..1449423 Shewanella sediminis HAW-EB3 5611311 YP_001472955.1 CDS Ssed_1216 NC_009831.1 1451197 1451748 D KEGG: shw:Sputw3181_1308 cytochrome b561; cytochrome b561 1451197..1451748 Shewanella sediminis HAW-EB3 5610822 YP_001472956.1 CDS Ssed_1217 NC_009831.1 1451830 1452408 D KEGG: sfr:Sfri_2875 YceI family protein; hypothetical protein 1451830..1452408 Shewanella sediminis HAW-EB3 5613946 YP_001472957.1 CDS Ssed_1218 NC_009831.1 1452564 1452842 R KEGG: slo:Shew_1122 Fe(II) trafficking protein YggX; hypothetical protein complement(1452564..1452842) Shewanella sediminis HAW-EB3 5613947 YP_001472958.1 CDS Ssed_1219 NC_009831.1 1452845 1453957 R KEGG: shw:Sputw3181_1311 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase complement(1452845..1453957) Shewanella sediminis HAW-EB3 5613948 YP_001472959.1 CDS trmB NC_009831.1 1454173 1454889 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1454173..1454889 Shewanella sediminis HAW-EB3 5614134 YP_001472960.1 CDS Ssed_1221 NC_009831.1 1454959 1455282 D KEGG: slo:Shew_1125 protein of unknown function DUF469; hypothetical protein 1454959..1455282 Shewanella sediminis HAW-EB3 5614135 YP_001472961.1 CDS Ssed_1222 NC_009831.1 1455282 1456196 D catalyzes the formation of glutamate from glutamine; glutaminase 1455282..1456196 Shewanella sediminis HAW-EB3 5614136 YP_001472962.1 CDS Ssed_1223 NC_009831.1 1456441 1457274 D KEGG: slo:Shew_1127 hypothetical protein; hypothetical protein 1456441..1457274 Shewanella sediminis HAW-EB3 5614137 YP_001472963.1 CDS Ssed_1224 NC_009831.1 1457703 1458644 D KEGG: slo:Shew_1128 transcriptional regulator, LysR family; carbonate dehydratase 1457703..1458644 Shewanella sediminis HAW-EB3 5614196 YP_001472964.1 CDS Ssed_1225 NC_009831.1 1459172 1461013 R KEGG: slo:Shew_1130 protein of unknown function DUF885; hypothetical protein complement(1459172..1461013) Shewanella sediminis HAW-EB3 5614197 YP_001472965.1 CDS Ssed_1226 NC_009831.1 1461159 1462295 R KEGG: shm:Shewmr7_1258 oxygen-independent coproporphyrinogen III oxidase; coproporphyrinogen dehydrogenase complement(1461159..1462295) Shewanella sediminis HAW-EB3 5614198 YP_001472966.1 CDS Ssed_1227 NC_009831.1 1462438 1463040 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(1462438..1463040) Shewanella sediminis HAW-EB3 5614199 YP_001472967.1 CDS Ssed_1228 NC_009831.1 1463240 1463674 R KEGG: slo:Shew_1133 hypothetical protein; hypothetical protein complement(1463240..1463674) Shewanella sediminis HAW-EB3 5614168 YP_001472968.1 CDS Ssed_1229 NC_009831.1 1463777 1464064 R KEGG: shw:Sputw3181_1321 protein of unknown function DUF167; hypothetical protein complement(1463777..1464064) Shewanella sediminis HAW-EB3 5614169 YP_001472969.1 CDS Ssed_1230 NC_009831.1 1464064 1464612 R KEGG: slo:Shew_1135 protein of unknown function YGGT; hypothetical protein complement(1464064..1464612) Shewanella sediminis HAW-EB3 5614170 YP_001472970.1 CDS Ssed_1231 NC_009831.1 1464657 1465475 R KEGG: slo:Shew_1136 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(1464657..1465475) Shewanella sediminis HAW-EB3 5614158 YP_001472971.1 CDS Ssed_1232 NC_009831.1 1465609 1466313 R KEGG: slo:Shew_1137 alanine racemase domain protein; alanine racemase complement(1465609..1466313) Shewanella sediminis HAW-EB3 5614159 YP_001472972.1 CDS Ssed_1233 NC_009831.1 1466350 1467384 D KEGG: son:SO3351 twitching motility protein PilT; twitching motility protein PilT 1466350..1467384 Shewanella sediminis HAW-EB3 5614160 YP_001472973.1 CDS Ssed_1234 NC_009831.1 1467411 1468523 D KEGG: shn:Shewana3_1196 twitching motility protein; twitching motility protein 1467411..1468523 Shewanella sediminis HAW-EB3 5614161 YP_001472974.1 CDS Ssed_1235 NC_009831.1 1468858 1469895 D KEGG: spc:Sputcn32_2683 ferrochelatase; ferrochelatase 1468858..1469895 Shewanella sediminis HAW-EB3 5610431 YP_001472975.1 CDS Ssed_1236 NC_009831.1 1469964 1470383 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1469964..1470383) Shewanella sediminis HAW-EB3 5610432 YP_001472976.1 CDS Ssed_1237 NC_009831.1 1470468 1471028 R KEGG: slo:Shew_1144 protein of unknown function DUF179; hypothetical protein complement(1470468..1471028) Shewanella sediminis HAW-EB3 5610433 YP_001472977.1 CDS Ssed_1238 NC_009831.1 1471075 1471404 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1471075..1471404) Shewanella sediminis HAW-EB3 5610434 YP_001472978.1 CDS Ssed_1239 NC_009831.1 1471938 1472255 R KEGG: spc:Sputcn32_2679 hypothetical protein; hypothetical protein complement(1471938..1472255) Shewanella sediminis HAW-EB3 5611508 YP_001472979.1 CDS Ssed_1240 NC_009831.1 1472427 1472987 D KEGG: slo:Shew_1147 hypothetical protein; hypothetical protein 1472427..1472987 Shewanella sediminis HAW-EB3 5611509 YP_001472980.1 CDS Ssed_1241 NC_009831.1 1473325 1473828 D KEGG: slo:Shew_1148 hypothetical protein; hypothetical protein 1473325..1473828 Shewanella sediminis HAW-EB3 5611510 YP_001472981.1 CDS Ssed_1242 NC_009831.1 1473960 1474838 R KEGG: slo:Shew_1149 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1473960..1474838) Shewanella sediminis HAW-EB3 5611567 YP_001472982.1 CDS Ssed_1243 NC_009831.1 1474923 1475333 D KEGG: vpa:VP1155 hypothetical protein; hypothetical protein 1474923..1475333 Shewanella sediminis HAW-EB3 5611568 YP_001472983.1 CDS Ssed_1244 NC_009831.1 1475606 1476175 D KEGG: sbl:Sbal_3012 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1475606..1476175 Shewanella sediminis HAW-EB3 5611569 YP_001472984.1 CDS Ssed_1245 NC_009831.1 1476331 1477155 D KEGG: slo:Shew_1152 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1476331..1477155 Shewanella sediminis HAW-EB3 5611570 YP_001472985.1 CDS Ssed_1246 NC_009831.1 1477258 1477905 R KEGG: slo:Shew_1154 protein of unknown function UPF0126; hypothetical protein complement(1477258..1477905) Shewanella sediminis HAW-EB3 5609786 YP_001472986.1 CDS Ssed_1247 NC_009831.1 1478254 1479264 D KEGG: slo:Shew_1155 threonine aldolase; threonine aldolase 1478254..1479264 Shewanella sediminis HAW-EB3 5609787 YP_001472987.1 CDS Ssed_1248 NC_009831.1 1479386 1480162 R KEGG: sbl:Sbal_3690 hypothetical protein; hypothetical protein complement(1479386..1480162) Shewanella sediminis HAW-EB3 5609788 YP_001472988.1 CDS Ssed_1249 NC_009831.1 1480291 1481922 R KEGG: slo:Shew_1157 alkaline phosphatase; alkaline phosphatase complement(1480291..1481922) Shewanella sediminis HAW-EB3 5609789 YP_001472989.1 CDS Ssed_1250 NC_009831.1 1481940 1483430 R KEGG: slo:Shew_1158 alkaline phosphatase; alkaline phosphatase complement(1481940..1483430) Shewanella sediminis HAW-EB3 5610484 YP_001472990.1 CDS Ssed_1251 NC_009831.1 1483782 1484150 D KEGG: slo:Shew_1159 thioesterase superfamily protein; thioesterase superfamily protein 1483782..1484150 Shewanella sediminis HAW-EB3 5610485 YP_001472991.1 CDS Ssed_1252 NC_009831.1 1484207 1484422 R KEGG: slo:Shew_1160 hypothetical protein; hypothetical protein complement(1484207..1484422) Shewanella sediminis HAW-EB3 5610486 YP_001472992.1 CDS Ssed_1253 NC_009831.1 1484582 1485883 R KEGG: slo:Shew_1161 NADH dehydrogenase; NADH dehydrogenase complement(1484582..1485883) Shewanella sediminis HAW-EB3 5614100 YP_001472993.1 CDS Ssed_1254 NC_009831.1 1486295 1486657 R KEGG: slo:Shew_1162 hypothetical protein; hypothetical protein complement(1486295..1486657) Shewanella sediminis HAW-EB3 5614101 YP_001472994.1 CDS Ssed_1255 NC_009831.1 1487281 1488456 D KEGG: slo:Shew_1163 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1487281..1488456 Shewanella sediminis HAW-EB3 5614102 YP_001472995.1 CDS Ssed_1256 NC_009831.1 1488469 1491585 D KEGG: slo:Shew_1164 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1488469..1491585 Shewanella sediminis HAW-EB3 5614103 YP_001472996.1 CDS Ssed_1257 NC_009831.1 1491913 1492125 D KEGG: ppr:PBPRB0036 Cold shock-like protein; cold shock-like protein 1491913..1492125 Shewanella sediminis HAW-EB3 5613898 YP_001472997.1 CDS Ssed_1258 NC_009831.1 1493116 1494264 R KEGG: slo:Shew_1166 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1493116..1494264) Shewanella sediminis HAW-EB3 5613899 YP_001472998.1 CDS Ssed_1259 NC_009831.1 1494644 1495804 D KEGG: slo:Shew_0238 porin, gram-negative type; porin 1494644..1495804 Shewanella sediminis HAW-EB3 5613900 YP_001472999.1 CDS Ssed_1260 NC_009831.1 1496104 1496583 R KEGG: slo:Shew_0707 YbaK/prolyl-tRNA synthetase associated region; prolyl-tRNA synthetase complement(1496104..1496583) Shewanella sediminis HAW-EB3 5613901 YP_001473000.1 CDS Ssed_1261 NC_009831.1 1496732 1497211 R KEGG: sbl:Sbal_3176 protein of unknown function DUF88; hypothetical protein complement(1496732..1497211) Shewanella sediminis HAW-EB3 5614229 YP_001473001.1 CDS Ssed_1262 NC_009831.1 1497399 1499039 D KEGG: slo:Shew_1174 sulfotransferase; sulfotransferase 1497399..1499039 Shewanella sediminis HAW-EB3 5614230 YP_001473002.1 CDS Ssed_1263 NC_009831.1 1499112 1500230 R KEGG: slo:Shew_1175 sec-C motif domain protein; SecC motif-containing protein complement(1499112..1500230) Shewanella sediminis HAW-EB3 5614231 YP_001473003.1 CDS Ssed_1264 NC_009831.1 1500326 1501336 R KEGG: slo:Shew_1176 sec-C motif domain protein; SecC motif-containing protein complement(1500326..1501336) Shewanella sediminis HAW-EB3 5612461 YP_001473004.1 CDS Ssed_1265 NC_009831.1 1501531 1501965 R KEGG: sfr:Sfri_0645 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1501531..1501965) Shewanella sediminis HAW-EB3 5612462 YP_001473005.1 CDS Ssed_1266 NC_009831.1 1502284 1503399 D KEGG: shw:Sputw3181_1226 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1502284..1503399 Shewanella sediminis HAW-EB3 5612463 YP_001473006.1 CDS Ssed_1267 NC_009831.1 1503399 1506506 D KEGG: spc:Sputcn32_2787 acriflavin resistance protein; acriflavin resistance protein 1503399..1506506 Shewanella sediminis HAW-EB3 5612464 YP_001473007.1 CDS Ssed_1268 NC_009831.1 1506638 1507108 D KEGG: pat:Patl_1730 protein of unknown function DUF419; hypothetical protein 1506638..1507108 Shewanella sediminis HAW-EB3 5614041 YP_001473008.1 CDS Ssed_1269 NC_009831.1 1507120 1508217 R KEGG: slo:Shew_1182 metallophosphoesterase; metallophosphoesterase complement(1507120..1508217) Shewanella sediminis HAW-EB3 5614042 YP_001473009.1 CDS Ssed_1270 NC_009831.1 1508521 1510188 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(1508521..1510188) Shewanella sediminis HAW-EB3 5614043 YP_001473010.1 CDS glyA NC_009831.1 1510701 1511957 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1510701..1511957 Shewanella sediminis HAW-EB3 5614044 YP_001473011.1 CDS nrdR NC_009831.1 1512113 1512562 D KEGG: sfr:Sfri_1034 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 1512113..1512562 Shewanella sediminis HAW-EB3 5611090 YP_001473012.1 CDS Ssed_1273 NC_009831.1 1512628 1513752 D KEGG: spc:Sputcn32_2778 riboflavin biosynthesis protein RibD; diaminohydroxyphosphoribosylaminopyrimidine deaminase 1512628..1513752 Shewanella sediminis HAW-EB3 5611091 YP_001473013.1 CDS Ssed_1274 NC_009831.1 1513757 1514419 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1513757..1514419 Shewanella sediminis HAW-EB3 5611092 YP_001473014.1 CDS Ssed_1275 NC_009831.1 1514529 1515632 D KEGG: slo:Shew_1189 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1514529..1515632 Shewanella sediminis HAW-EB3 5611099 YP_001473015.1 CDS ribH NC_009831.1 1515812 1516294 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1515812..1516294 Shewanella sediminis HAW-EB3 5611100 YP_001473016.1 CDS nusB NC_009831.1 1516303 1516707 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1516303..1516707 Shewanella sediminis HAW-EB3 5611101 YP_001473017.1 CDS Ssed_1278 NC_009831.1 1516823 1517782 D KEGG: shn:Shewana3_1101 thiamine-monophosphate kinase; thiamine-phosphate kinase 1516823..1517782 Shewanella sediminis HAW-EB3 5611102 YP_001473018.1 CDS Ssed_1279 NC_009831.1 1517782 1518276 D KEGG: sbl:Sbal_3154 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase 1517782..1518276 Shewanella sediminis HAW-EB3 5613731 YP_001473019.1 CDS Ssed_1280 NC_009831.1 1518661 1519869 D KEGG: gvi:glr1180 hypothetical protein; ubiquinone/menaquinone biosynthesis methyltransferase 1518661..1519869 Shewanella sediminis HAW-EB3 5613732 YP_001473020.1 CDS Ssed_1281 NC_009831.1 1519990 1521651 R KEGG: slo:Shew_1196 DNA repair protein RecN; recombination and repair protein complement(1519990..1521651) Shewanella sediminis HAW-EB3 5613733 YP_001473021.1 CDS Ssed_1282 NC_009831.1 1521747 1522715 R KEGG: sbl:Sbal_3152 auxin efflux carrier; auxin efflux carrier complement(1521747..1522715) Shewanella sediminis HAW-EB3 5613734 YP_001473022.1 CDS Ssed_1283 NC_009831.1 1522858 1523109 R KEGG: she:Shewmr4_1107 hypothetical protein; hypothetical protein complement(1522858..1523109) Shewanella sediminis HAW-EB3 5611110 YP_001473023.1 CDS Ssed_1284 NC_009831.1 1523399 1524004 R KEGG: slo:Shew_1199 protein of unknown function DUF416; hypothetical protein complement(1523399..1524004) Shewanella sediminis HAW-EB3 5611111 YP_001473024.1 CDS Ssed_1285 NC_009831.1 1523979 1526792 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1523979..1526792) Shewanella sediminis HAW-EB3 5611112 YP_001473025.1 CDS rumA NC_009831.1 1526890 1528218 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1526890..1528218 Shewanella sediminis HAW-EB3 5611140 YP_001473026.1 CDS Ssed_1287 NC_009831.1 1528439 1530646 D KEGG: slo:Shew_1202 (p)ppGpp synthetase I, SpoT/RelA; GTP diphosphokinase 1528439..1530646 Shewanella sediminis HAW-EB3 5611141 YP_001473027.1 CDS mazG NC_009831.1 1530746 1531537 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1530746..1531537 Shewanella sediminis HAW-EB3 5611142 YP_001473028.1 CDS pyrG NC_009831.1 1531660 1533297 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1531660..1533297 Shewanella sediminis HAW-EB3 5611143 YP_001473029.1 CDS eno NC_009831.1 1533416 1534711 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1533416..1534711 Shewanella sediminis HAW-EB3 5611175 YP_001473030.1 CDS Ssed_1291 NC_009831.1 1534919 1535218 D KEGG: slo:Shew_1206 septum formation initiator; septum formation initiator 1534919..1535218 Shewanella sediminis HAW-EB3 5611176 YP_001473031.1 CDS ispD NC_009831.1 1535266 1535970 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1535266..1535970 Shewanella sediminis HAW-EB3 5611177 YP_001473032.1 CDS ispF NC_009831.1 1536056 1536541 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1536056..1536541 Shewanella sediminis HAW-EB3 5611178 YP_001473033.1 CDS Ssed_1294 NC_009831.1 1536606 1537676 D KEGG: slo:Shew_1209 pseudouridylate synthase; pseudouridylate synthase 1536606..1537676 Shewanella sediminis HAW-EB3 5613563 YP_001473034.1 CDS surE NC_009831.1 1537737 1538486 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1537737..1538486 Shewanella sediminis HAW-EB3 5613564 YP_001473035.1 CDS Ssed_1296 NC_009831.1 1538483 1539118 D KEGG: slo:Shew_1211 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1538483..1539118 Shewanella sediminis HAW-EB3 5613565 YP_001473036.1 CDS Ssed_1297 NC_009831.1 1539159 1540073 D KEGG: slo:Shew_1212 peptidase M23B; peptidase M23B 1539159..1540073 Shewanella sediminis HAW-EB3 5611193 YP_001473037.1 CDS Ssed_1298 NC_009831.1 1540150 1541121 D KEGG: slo:Shew_1213 RNA polymerase, sigma 70 subunit, RpoD family; RpoD family RNA polymerase sigma factor 1540150..1541121 Shewanella sediminis HAW-EB3 5611194 YP_001473038.1 CDS Ssed_1299 NC_009831.1 1541354 1543933 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1541354..1543933) Shewanella sediminis HAW-EB3 5611195 YP_001473039.1 CDS recA NC_009831.1 1544274 1545335 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1544274..1545335 Shewanella sediminis HAW-EB3 5611196 YP_001473040.1 CDS Ssed_1301 NC_009831.1 1545549 1546142 R KEGG: she:Shewmr4_1779 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(1545549..1546142) Shewanella sediminis HAW-EB3 5614123 YP_001473041.1 CDS Ssed_1302 NC_009831.1 1546512 1546964 R KEGG: sfr:Sfri_3681 hypothetical protein; hypothetical protein complement(1546512..1546964) Shewanella sediminis HAW-EB3 5614124 YP_001473042.1 CDS Ssed_1303 NC_009831.1 1547418 1547723 R KEGG: sil:SPO3588 hypothetical protein; hypothetical protein complement(1547418..1547723) Shewanella sediminis HAW-EB3 5614125 YP_001473043.1 CDS Ssed_1304 NC_009831.1 1547738 1548124 R KEGG: sbl:Sbal_0203 NIPSNAP family containing protein; NIPSNAP family protein complement(1547738..1548124) Shewanella sediminis HAW-EB3 5614126 YP_001473044.1 CDS Ssed_1305 NC_009831.1 1548674 1549606 D KEGG: shm:Shewmr7_2579 cytochrome c family protein; cytochrome c family protein 1548674..1549606 Shewanella sediminis HAW-EB3 5611313 YP_001473045.1 CDS Ssed_1306 NC_009831.1 1549618 1551636 D KEGG: sfr:Sfri_3685 outer membrane protein; outer membrane protein 1549618..1551636 Shewanella sediminis HAW-EB3 5611314 YP_001473046.1 CDS Ssed_1307 NC_009831.1 1551660 1554149 D KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; anaerobic dimethyl sulfoxide reductase subunit A 1551660..1554149 Shewanella sediminis HAW-EB3 5611315 YP_001473047.1 CDS Ssed_1308 NC_009831.1 1554164 1554799 D KEGG: sfr:Sfri_3127 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1554164..1554799 Shewanella sediminis HAW-EB3 5611316 YP_001473048.1 CDS Ssed_1309 NC_009831.1 1554850 1555464 D KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 1554850..1555464 Shewanella sediminis HAW-EB3 5611340 YP_001473049.1 CDS Ssed_1310 NC_009831.1 1555464 1556195 D KEGG: mmp:MMP0586 uncharacterized endonuclease III related protein; endonuclease III-like protein 1555464..1556195 Shewanella sediminis HAW-EB3 5611341 YP_001473050.1 CDS Ssed_1311 NC_009831.1 1556294 1557100 R KEGG: ppr:PBPRA0141 transcriptional regulator, LysR family; transcriptional regulator-like protein complement(1556294..1557100) Shewanella sediminis HAW-EB3 5611342 YP_001473051.1 CDS Ssed_1312 NC_009831.1 1557110 1557952 R KEGG: shn:Shewana3_3686 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1557110..1557952) Shewanella sediminis HAW-EB3 5611301 YP_001473052.1 CDS Ssed_1313 NC_009831.1 1558317 1559180 R KEGG: aor:AO090010000317 predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 Pfam: A1pp PROSITE: SIRTUIN; phosphatase complement(1558317..1559180) Shewanella sediminis HAW-EB3 5611302 YP_001473053.1 CDS Ssed_1314 NC_009831.1 1559167 1560048 R KEGG: cdf:CD0865 hypothetical protein; hypothetical protein complement(1559167..1560048) Shewanella sediminis HAW-EB3 5611303 YP_001473054.1 CDS Ssed_1315 NC_009831.1 1560187 1560951 R KEGG: sil:SPOA0106 hypothetical protein; hypothetical protein complement(1560187..1560951) Shewanella sediminis HAW-EB3 5611304 YP_001473055.1 CDS Ssed_1316 NC_009831.1 1562334 1563545 R KEGG: hch:HCH_04222 permease of the major facilitator superfamily; major facilitator superfamily permease complement(1562334..1563545) Shewanella sediminis HAW-EB3 5613883 YP_001473056.1 CDS Ssed_1317 NC_009831.1 1563679 1564584 D KEGG: aha:AHA_1950 transcriptional regulator, LysR family; LysR family transcriptional regulator 1563679..1564584 Shewanella sediminis HAW-EB3 5613884 YP_001473057.1 CDS alaS NC_009831.1 1565532 1568156 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1565532..1568156 Shewanella sediminis HAW-EB3 5613885 YP_001473058.1 CDS Ssed_1319 NC_009831.1 1568610 1568807 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1568610..1568807 Shewanella sediminis HAW-EB3 5613886 YP_001473059.1 CDS Ssed_1320 NC_009831.1 1571449 1571745 D KEGG: slo:Shew_1219 sodium pump decarboxylases, gamma subunit; sodium pump decarboxylase, gamma subunit 1571449..1571745 Shewanella sediminis HAW-EB3 5610351 YP_001473060.1 CDS Ssed_1321 NC_009831.1 1571771 1573585 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1571771..1573585 Shewanella sediminis HAW-EB3 5610094 YP_001473061.1 CDS Ssed_1322 NC_009831.1 1573594 1574724 D KEGG: slo:Shew_1221 sodium ion-translocating decarboxylase, beta subunit; glutaconyl-CoA decarboxylase 1573594..1574724 Shewanella sediminis HAW-EB3 5610095 YP_001473062.1 CDS Ssed_1323 NC_009831.1 1575172 1575357 D KEGG: slo:Shew_1222 hypothetical protein; hypothetical protein 1575172..1575357 Shewanella sediminis HAW-EB3 5611023 YP_001473063.1 CDS Ssed_1324 NC_009831.1 1575419 1575754 R KEGG: shw:Sputw3181_1017 sec-C motif domain protein; SecC motif-containing protein complement(1575419..1575754) Shewanella sediminis HAW-EB3 5611024 YP_001473064.1 CDS Ssed_1325 NC_009831.1 1575906 1576091 R KEGG: slo:Shew_1223 hypothetical protein; hypothetical protein complement(1575906..1576091) Shewanella sediminis HAW-EB3 5611025 YP_001473065.1 CDS Ssed_1326 NC_009831.1 1576280 1577563 R KEGG: slo:Shew_1224 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1576280..1577563) Shewanella sediminis HAW-EB3 5611026 YP_001473066.1 CDS Ssed_1327 NC_009831.1 1577852 1578274 D KEGG: slo:Shew_1225 hypothetical protein; hypothetical protein 1577852..1578274 Shewanella sediminis HAW-EB3 5610570 YP_001473067.1 CDS Ssed_1328 NC_009831.1 1578295 1581129 D KEGG: slo:Shew_1226 peptidase M16 domain protein; peptidase M16 domain-containing protein 1578295..1581129 Shewanella sediminis HAW-EB3 5610571 YP_001473068.1 CDS Ssed_1329 NC_009831.1 1581345 1582979 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 1581345..1582979 Shewanella sediminis HAW-EB3 5610572 YP_001473069.1 CDS Ssed_1330 NC_009831.1 1582976 1583416 D KEGG: shm:Shewmr7_3061 hypothetical protein; hypothetical protein 1582976..1583416 Shewanella sediminis HAW-EB3 5610573 YP_001473070.1 CDS Ssed_1331 NC_009831.1 1583676 1584293 D KEGG: slo:Shew_1229 hypothetical protein; hypothetical protein 1583676..1584293 Shewanella sediminis HAW-EB3 5610606 YP_001473071.1 CDS Ssed_1332 NC_009831.1 1584409 1585647 R KEGG: sdn:Sden_1222 GGDEF domain; diguanylate cyclase complement(1584409..1585647) Shewanella sediminis HAW-EB3 5610607 YP_001473072.1 CDS Ssed_1333 NC_009831.1 1586138 1586647 D KEGG: slo:Shew_1230 phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylaminoimidazole carboxylase 1586138..1586647 Shewanella sediminis HAW-EB3 5610608 YP_001473073.1 CDS Ssed_1334 NC_009831.1 1586714 1588438 R role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM complement(1586714..1588438) Shewanella sediminis HAW-EB3 5610319 YP_001473074.1 CDS Ssed_1335 NC_009831.1 1588923 1589537 D KEGG: slo:Shew_1231 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1588923..1589537 Shewanella sediminis HAW-EB3 5610320 YP_001473075.1 CDS Ssed_1336 NC_009831.1 1589527 1590249 D KEGG: slo:Shew_1232 hypothetical protein; hypothetical protein 1589527..1590249 Shewanella sediminis HAW-EB3 5610321 YP_001473076.1 CDS Ssed_1337 NC_009831.1 1590298 1590996 R KEGG: cph:Cpha266_1009 hypothetical protein; hypothetical protein complement(1590298..1590996) Shewanella sediminis HAW-EB3 5610322 YP_001473077.1 CDS Ssed_1338 NC_009831.1 1591027 1591503 R KEGG: sbl:Sbal_2319 hypothetical protein; hypothetical protein complement(1591027..1591503) Shewanella sediminis HAW-EB3 5610927 YP_001473078.1 CDS Ssed_1339 NC_009831.1 1591692 1594976 D KEGG: shw:Sputw3181_1281 peptidase S41; peptidase S41 1591692..1594976 Shewanella sediminis HAW-EB3 5610928 YP_001473079.1 CDS Ssed_1340 NC_009831.1 1595219 1596106 D KEGG: slo:Shew_1235 hypothetical protein; hypothetical protein 1595219..1596106 Shewanella sediminis HAW-EB3 5610929 YP_001473080.1 CDS Ssed_1341 NC_009831.1 1596266 1596835 D KEGG: slo:Shew_2686 lipoprotein; lipoprotein 1596266..1596835 Shewanella sediminis HAW-EB3 5610930 YP_001473081.1 CDS Ssed_1342 NC_009831.1 1597648 1598136 R KEGG: shm:Shewmr7_1215 hypothetical protein; hypothetical protein complement(1597648..1598136) Shewanella sediminis HAW-EB3 5613788 YP_001473082.1 CDS Ssed_1343 NC_009831.1 1598277 1598618 R KEGG: shn:Shewana3_1147 hypothetical protein; hypothetical protein complement(1598277..1598618) Shewanella sediminis HAW-EB3 5613789 YP_001473083.1 CDS Ssed_1344 NC_009831.1 1598623 1600293 R KEGG: spc:Sputcn32_2728 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(1598623..1600293) Shewanella sediminis HAW-EB3 5613790 YP_001473084.1 CDS Ssed_1345 NC_009831.1 1600297 1600596 R KEGG: sdn:Sden_2355 hypothetical protein; hypothetical protein complement(1600297..1600596) Shewanella sediminis HAW-EB3 5611726 YP_001473085.1 CDS Ssed_1346 NC_009831.1 1601225 1601581 D KEGG: slo:Shew_1241 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1601225..1601581 Shewanella sediminis HAW-EB3 5611727 YP_001473086.1 CDS Ssed_1347 NC_009831.1 1601711 1603633 R KEGG: vfi:VFA0260 glutathione-regulated potassium-efflux system protein KefC; glutathione-regulated potassium-efflux system protein KefC complement(1601711..1603633) Shewanella sediminis HAW-EB3 5611728 YP_001473087.1 CDS Ssed_1348 NC_009831.1 1603661 1604278 R KEGG: ppr:PBPRB0548 NAD(P)H oxidoreductase; NAD(P)H oxidoreductase complement(1603661..1604278) Shewanella sediminis HAW-EB3 5611729 YP_001473088.1 CDS Ssed_1349 NC_009831.1 1604797 1605375 D KEGG: shw:Sputw3181_2794 PhnA protein; PhnA protein 1604797..1605375 Shewanella sediminis HAW-EB3 5611392 YP_001473089.1 CDS Ssed_1350 NC_009831.1 1605517 1605969 D KEGG: slo:Shew_2726 protein of unknown function DUF188; hypothetical protein 1605517..1605969 Shewanella sediminis HAW-EB3 5611393 YP_001473090.1 CDS Ssed_1351 NC_009831.1 1606364 1607488 D KEGG: slo:Shew_2725 PfkB domain protein; ribokinase-like domain-containing protein 1606364..1607488 Shewanella sediminis HAW-EB3 5611394 YP_001473091.1 CDS Ssed_1352 NC_009831.1 1607482 1608396 D KEGG: slo:Shew_2724 indigoidine synthase A family protein; indigoidine synthase A family protein 1607482..1608396 Shewanella sediminis HAW-EB3 5611395 YP_001473092.1 CDS Ssed_1353 NC_009831.1 1608663 1609946 D KEGG: sde:Sde_3835 excitatory amino acid transporter; excitatory amino acid transporter 1608663..1609946 Shewanella sediminis HAW-EB3 5611733 YP_001473093.1 CDS Ssed_1354 NC_009831.1 1609996 1611102 R KEGG: vvu:VV1_2369 GGDEF family protein; diguanylate cyclase complement(1609996..1611102) Shewanella sediminis HAW-EB3 5611734 YP_001473094.1 CDS Ssed_1355 NC_009831.1 1611453 1612682 D KEGG: psa:PST_0687 sodium-glutamate symporter; sodium-glutamate symporter 1611453..1612682 Shewanella sediminis HAW-EB3 5611735 YP_001473095.1 CDS Ssed_1356 NC_009831.1 1612796 1613317 R KEGG: ppr:PBPRB0617 MutT/NUDIX family protein; MutT/NUDIX family protein complement(1612796..1613317) Shewanella sediminis HAW-EB3 5611736 YP_001473096.1 CDS Ssed_1357 NC_009831.1 1613501 1614220 R KEGG: sbl:Sbal_2328 hypothetical protein; hypothetical protein complement(1613501..1614220) Shewanella sediminis HAW-EB3 5613098 YP_001473097.1 CDS Ssed_1358 NC_009831.1 1614497 1614823 R hypothetical protein complement(1614497..1614823) Shewanella sediminis HAW-EB3 5613099 YP_001473098.1 CDS Ssed_1359 NC_009831.1 1615041 1615280 R KEGG: slo:Shew_2721 hypothetical protein; hypothetical protein complement(1615041..1615280) Shewanella sediminis HAW-EB3 5613100 YP_001473099.1 CDS Ssed_1360 NC_009831.1 1615537 1616283 D KEGG: saz:Sama_2395 hypothetical protein; hypothetical protein 1615537..1616283 Shewanella sediminis HAW-EB3 5610796 YP_001473100.1 CDS Ssed_1361 NC_009831.1 1616472 1616651 D KEGG: ppr:PBPRA1009 hypothetical protein; hypothetical protein 1616472..1616651 Shewanella sediminis HAW-EB3 5610797 YP_001473101.1 CDS Ssed_1362 NC_009831.1 1617225 1617881 R KEGG: maq:Maqu_1180 anti-ECFsigma factor, ChrR; anti-ECF sigma factor ChrR complement(1617225..1617881) Shewanella sediminis HAW-EB3 5610798 YP_001473102.1 CDS Ssed_1363 NC_009831.1 1617941 1618732 R KEGG: cps:CPS_0824 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase complement(1617941..1618732) Shewanella sediminis HAW-EB3 5610799 YP_001473103.1 CDS Ssed_1364 NC_009831.1 1618971 1619252 D KEGG: abo:ABO_0662 hypothetical protein; hypothetical protein 1618971..1619252 Shewanella sediminis HAW-EB3 5612801 YP_001473104.1 CDS Ssed_1365 NC_009831.1 1619348 1619650 D KEGG: cps:CPS_2241 hypothetical protein; hypothetical protein 1619348..1619650 Shewanella sediminis HAW-EB3 5612802 YP_001473105.1 CDS Ssed_1366 NC_009831.1 1620046 1621035 D KEGG: sbl:Sbal_0430 diguanylate cyclase with PAS/PAC sensor; PAS/PAC sensor-containing diguanylate cyclase 1620046..1621035 Shewanella sediminis HAW-EB3 5612803 YP_001473106.1 CDS Ssed_1367 NC_009831.1 1621320 1621907 R KEGG: cps:CPS_3362 lipoprotein; lipoprotein complement(1621320..1621907) Shewanella sediminis HAW-EB3 5612804 YP_001473107.1 CDS Ssed_1368 NC_009831.1 1621933 1624074 R KEGG: vfi:VFA0120 hypothetical cytosolic protein; hypothetical protein complement(1621933..1624074) Shewanella sediminis HAW-EB3 5612137 YP_001473108.1 CDS Ssed_1369 NC_009831.1 1624379 1625023 R hypothetical protein complement(1624379..1625023) Shewanella sediminis HAW-EB3 5612138 YP_001473109.1 CDS Ssed_1370 NC_009831.1 1625251 1626531 D KEGG: ppr:PBPRB1966 hypothetical protein; hypothetical protein 1625251..1626531 Shewanella sediminis HAW-EB3 5612139 YP_001473110.1 CDS Ssed_1371 NC_009831.1 1626985 1628103 D KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 1626985..1628103 Shewanella sediminis HAW-EB3 5611400 YP_001473111.1 CDS Ssed_1372 NC_009831.1 1628584 1629648 D KEGG: rle:RL3775 HlyD family secretion protein; membrane-fusion protein-like protein 1628584..1629648 Shewanella sediminis HAW-EB3 5611401 YP_001473112.1 CDS Ssed_1373 NC_009831.1 1629652 1632789 D KEGG: slo:Shew_3796 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1629652..1632789 Shewanella sediminis HAW-EB3 5611402 YP_001473113.1 CDS Ssed_1374 NC_009831.1 1633027 1634235 D hypothetical protein 1633027..1634235 Shewanella sediminis HAW-EB3 5611403 YP_001473114.1 CDS Ssed_1375 NC_009831.1 1634524 1635318 D KEGG: ppr:PBPRB1967 hypothetical protein; hypothetical protein 1634524..1635318 Shewanella sediminis HAW-EB3 5612696 YP_001473115.1 CDS Ssed_1376 NC_009831.1 1635409 1636704 D KEGG: ppr:PBPRB1966 hypothetical protein; hypothetical protein 1635409..1636704 Shewanella sediminis HAW-EB3 5612697 YP_001473116.1 CDS Ssed_1377 NC_009831.1 1636884 1637909 R KEGG: xfa:XF1743 esterase; esterase/lipase-like protein complement(1636884..1637909) Shewanella sediminis HAW-EB3 5612698 YP_001473117.1 CDS Ssed_1378 NC_009831.1 1638415 1639092 D hypothetical protein 1638415..1639092 Shewanella sediminis HAW-EB3 5612699 YP_001473118.1 CDS Ssed_1379 NC_009831.1 1639214 1639507 D KEGG: sbl:Sbal_4226 protein of unknown function DUF333; hypothetical protein 1639214..1639507 Shewanella sediminis HAW-EB3 5612700 YP_001473119.1 CDS Ssed_1380 NC_009831.1 1639581 1640153 D KEGG: slo:Shew_0396 methylation site containing protein; methylation site containing protein 1639581..1640153 Shewanella sediminis HAW-EB3 5612701 YP_001473120.1 CDS Ssed_1381 NC_009831.1 1640500 1644906 D KEGG: hch:HCH_00809 signal transduction histidine kinase; Signal transduction histidine kinase-like protein 1640500..1644906 Shewanella sediminis HAW-EB3 5612702 YP_001473121.1 CDS Ssed_1382 NC_009831.1 1644899 1645807 D KEGG: saz:Sama_0065 response regulator receiver protein; response regulator receiver protein 1644899..1645807 Shewanella sediminis HAW-EB3 5612880 YP_001473122.1 CDS Ssed_1383 NC_009831.1 1645918 1647147 D KEGG: dar:Daro_0012 response regulator receiver; response regulator 1645918..1647147 Shewanella sediminis HAW-EB3 5612881 YP_001473123.1 CDS Ssed_1384 NC_009831.1 1647155 1648153 R KEGG: cps:CPS_1463 hypothetical protein; hypothetical protein complement(1647155..1648153) Shewanella sediminis HAW-EB3 5612882 YP_001473124.1 CDS Ssed_1385 NC_009831.1 1648311 1648772 R hypothetical protein complement(1648311..1648772) Shewanella sediminis HAW-EB3 5612883 YP_001473125.1 CDS Ssed_1386 NC_009831.1 1649064 1649486 D KEGG: slo:Shew_1244 OsmC family protein; OsmC family protein 1649064..1649486 Shewanella sediminis HAW-EB3 5613156 YP_001473126.1 CDS Ssed_1387 NC_009831.1 1649570 1649956 D KEGG: cps:CPS_3329 hypothetical protein; hypothetical protein 1649570..1649956 Shewanella sediminis HAW-EB3 5613157 YP_001473127.1 CDS Ssed_1388 NC_009831.1 1650208 1650735 D KEGG: shm:Shewmr7_1064 methylation site containing protein; methylation site containing protein 1650208..1650735 Shewanella sediminis HAW-EB3 5613158 YP_001473128.1 CDS Ssed_1389 NC_009831.1 1650888 1651445 R KEGG: bja:blr4047 hypothetical protein; hypothetical protein complement(1650888..1651445) Shewanella sediminis HAW-EB3 5613159 YP_001473129.1 CDS Ssed_1390 NC_009831.1 1651894 1652442 D KEGG: sfr:Sfri_2735 cation antiporter; cation antiporter 1651894..1652442 Shewanella sediminis HAW-EB3 5613229 YP_001473130.1 CDS Ssed_1391 NC_009831.1 1652429 1653412 D KEGG: noc:Noc_2951 universal stress protein, UspA; universal stress protein, UspA 1652429..1653412 Shewanella sediminis HAW-EB3 5613230 YP_001473131.1 CDS Ssed_1392 NC_009831.1 1653419 1653697 D KEGG: sfr:Sfri_2736 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 1653419..1653697 Shewanella sediminis HAW-EB3 5613231 YP_001473132.1 CDS Ssed_1393 NC_009831.1 1653684 1653983 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit G 1653684..1653983 Shewanella sediminis HAW-EB3 5613704 YP_001473133.1 CDS Ssed_1394 NC_009831.1 1653971 1654294 D KEGG: sfr:Sfri_2738 hypothetical protein; hypothetical protein 1653971..1654294 Shewanella sediminis HAW-EB3 5613705 YP_001473134.1 CDS Ssed_1395 NC_009831.1 1654408 1655064 D KEGG: sfr:Sfri_2739 hypothetical protein; hypothetical protein 1654408..1655064 Shewanella sediminis HAW-EB3 5613706 YP_001473135.1 CDS Ssed_1396 NC_009831.1 1655061 1655369 D KEGG: sfr:Sfri_2740 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 1655061..1655369 Shewanella sediminis HAW-EB3 5613707 YP_001473136.1 CDS Ssed_1397 NC_009831.1 1655341 1656846 D KEGG: sfr:Sfri_2741 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1655341..1656846 Shewanella sediminis HAW-EB3 5613295 YP_001473137.1 CDS Ssed_1398 NC_009831.1 1656843 1658339 D KEGG: sfr:Sfri_2742 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1656843..1658339 Shewanella sediminis HAW-EB3 5613296 YP_001473138.1 CDS Ssed_1399 NC_009831.1 1658336 1659649 D KEGG: sfr:Sfri_2743 formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein; formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter MnhD subunit-like protein 1658336..1659649 Shewanella sediminis HAW-EB3 5613297 YP_001473139.1 CDS Ssed_1400 NC_009831.1 1659906 1660253 D hypothetical protein 1659906..1660253 Shewanella sediminis HAW-EB3 5613298 YP_001473140.1 CDS Ssed_1401 NC_009831.1 1660789 1661718 R KEGG: vvy:VVA1171 hypothetical protein; AraC family transcriptional regulator complement(1660789..1661718) Shewanella sediminis HAW-EB3 5613865 YP_001473141.1 CDS Ssed_1402 NC_009831.1 1662030 1662980 D KEGG: sfr:Sfri_3686 cytochrome c family protein; cytochrome c family protein 1662030..1662980 Shewanella sediminis HAW-EB3 5613866 YP_001473142.1 CDS Ssed_1403 NC_009831.1 1662995 1665001 D KEGG: sfr:Sfri_3685 outer membrane protein; outer membrane protein 1662995..1665001 Shewanella sediminis HAW-EB3 5613867 YP_001473143.1 CDS Ssed_1404 NC_009831.1 1665016 1667388 D KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; anaerobic dimethyl sulfoxide reductase subunit A 1665016..1667388 Shewanella sediminis HAW-EB3 5613868 YP_001473144.1 CDS Ssed_1405 NC_009831.1 1667412 1668029 D KEGG: sfr:Sfri_3127 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1667412..1668029 Shewanella sediminis HAW-EB3 5612620 YP_001473145.1 CDS Ssed_1406 NC_009831.1 1668099 1668719 D KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 1668099..1668719 Shewanella sediminis HAW-EB3 5612621 YP_001473146.1 CDS smpB NC_009831.1 1669480 1669974 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1669480..1669974) Shewanella sediminis HAW-EB3 5610280 YP_001473147.1 CDS Ssed_1408 NC_009831.1 1670199 1670630 D KEGG: slo:Shew_1269 cyclase/dehydrase; cyclase/dehydrase 1670199..1670630 Shewanella sediminis HAW-EB3 5613708 YP_001473148.1 CDS Ssed_1409 NC_009831.1 1670980 1671312 D KEGG: slo:Shew_1270 protein of unknown function UPF0125; hypothetical protein 1670980..1671312 Shewanella sediminis HAW-EB3 5613709 YP_001473149.1 CDS Ssed_1410 NC_009831.1 1671422 1671937 R KEGG: slo:Shew_1271 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein complement(1671422..1671937) Shewanella sediminis HAW-EB3 5613710 YP_001473150.1 CDS Ssed_1411 NC_009831.1 1672375 1673205 D KEGG: slo:Shew_1272 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 1672375..1673205 Shewanella sediminis HAW-EB3 5613711 YP_001473151.1 CDS Ssed_1412 NC_009831.1 1673412 1673630 D KEGG: slo:Shew_1273 hypothetical protein; hypothetical protein 1673412..1673630 Shewanella sediminis HAW-EB3 5609883 YP_001473152.1 CDS Ssed_1413 NC_009831.1 1673704 1675467 D KEGG: slo:Shew_1274 diguanylate cyclase; diguanylate cyclase 1673704..1675467 Shewanella sediminis HAW-EB3 5609884 YP_001473153.1 CDS Ssed_1414 NC_009831.1 1676315 1678033 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1676315..1678033 Shewanella sediminis HAW-EB3 5609885 YP_001473154.1 CDS Ssed_1415 NC_009831.1 1678176 1679501 D KEGG: sbl:Sbal_1317 isocitrate lyase; isocitrate lyase 1678176..1679501 Shewanella sediminis HAW-EB3 5609886 YP_001473155.1 CDS Ssed_1416 NC_009831.1 1679881 1681362 D KEGG: slo:Shew_1277 signal transduction protein; signal transduction protein 1679881..1681362 Shewanella sediminis HAW-EB3 5609700 YP_001473156.1 CDS Ssed_1417 NC_009831.1 1681426 1681959 R KEGG: sbl:Sbal_3009 hypothetical protein; hypothetical protein complement(1681426..1681959) Shewanella sediminis HAW-EB3 5609701 YP_001473157.1 CDS Ssed_1418 NC_009831.1 1682026 1682850 R KEGG: sbl:Sbal_3008 protein of unknown function DUF980; hypothetical protein complement(1682026..1682850) Shewanella sediminis HAW-EB3 5609702 YP_001473158.1 CDS Ssed_1419 NC_009831.1 1682958 1684703 R KEGG: shn:Shewana3_1212 diguanylate cyclase; diguanylate cyclase complement(1682958..1684703) Shewanella sediminis HAW-EB3 5609655 YP_001473159.1 CDS Ssed_1420 NC_009831.1 1684700 1686136 R KEGG: sbl:Sbal_3006 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1684700..1686136) Shewanella sediminis HAW-EB3 5609656 YP_001473160.1 CDS Ssed_1421 NC_009831.1 1686440 1686889 R KEGG: slo:Shew_1280 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(1686440..1686889) Shewanella sediminis HAW-EB3 5609657 YP_001473161.1 CDS Ssed_1422 NC_009831.1 1686849 1687592 R KEGG: slo:Shew_1281 hypothetical protein; hypothetical protein complement(1686849..1687592) Shewanella sediminis HAW-EB3 5609658 YP_001473162.1 CDS Ssed_1423 NC_009831.1 1688204 1688428 D KEGG: sfr:Sfri_1108 hypothetical protein; hypothetical protein 1688204..1688428 Shewanella sediminis HAW-EB3 5610228 YP_001473163.1 CDS Ssed_1424 NC_009831.1 1688573 1688875 D KEGG: slo:Shew_1283 NrfJ-related protein; NrfJ-related protein 1688573..1688875 Shewanella sediminis HAW-EB3 5610229 YP_001473164.1 CDS Ssed_1425 NC_009831.1 1689018 1689563 D KEGG: slo:Shew_1284 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1689018..1689563 Shewanella sediminis HAW-EB3 5610230 YP_001473165.1 CDS Ssed_1426 NC_009831.1 1689639 1690088 R KEGG: son:SO3319 hypothetical protein; hypothetical protein complement(1689639..1690088) Shewanella sediminis HAW-EB3 5610231 YP_001473166.1 CDS Ssed_1427 NC_009831.1 1690454 1692199 R KEGG: slo:Shew_1285 5'-nucleotidase; 5'-nucleotidase complement(1690454..1692199) Shewanella sediminis HAW-EB3 5610289 YP_001473167.1 CDS Ssed_1428 NC_009831.1 1692487 1693569 R KEGG: slo:Shew_1286 protein of unknown function DUF21; hypothetical protein complement(1692487..1693569) Shewanella sediminis HAW-EB3 5610290 YP_001473168.1 CDS Ssed_1429 NC_009831.1 1693728 1694849 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1693728..1694849 Shewanella sediminis HAW-EB3 5610291 YP_001473169.1 CDS Ssed_1430 NC_009831.1 1694883 1695671 D KEGG: slo:Shew_1288 type IV pilus biogenesis/stability protein PilW; type IV pilus biogenesis/stability protein PilW 1694883..1695671 Shewanella sediminis HAW-EB3 5611548 YP_001473170.1 CDS Ssed_1431 NC_009831.1 1695671 1696603 D KEGG: slo:Shew_1289 hypothetical protein; hypothetical protein 1695671..1696603 Shewanella sediminis HAW-EB3 5611549 YP_001473171.1 CDS ispG NC_009831.1 1696707 1697822 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1696707..1697822 Shewanella sediminis HAW-EB3 5611550 YP_001473172.1 CDS hisS NC_009831.1 1697982 1699256 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1697982..1699256 Shewanella sediminis HAW-EB3 5611551 YP_001473173.1 CDS Ssed_1434 NC_009831.1 1699270 1699890 D KEGG: slo:Shew_1292 tetratricopeptide TPR_4; hypothetical protein 1699270..1699890 Shewanella sediminis HAW-EB3 5609844 YP_001473174.1 CDS Ssed_1435 NC_009831.1 1699902 1701089 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1699902..1701089 Shewanella sediminis HAW-EB3 5609845 YP_001473175.1 CDS engA NC_009831.1 1701194 1702660 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1701194..1702660 Shewanella sediminis HAW-EB3 5609846 YP_001473176.1 CDS Ssed_1437 NC_009831.1 1703214 1704386 D KEGG: saz:Sama_0077 transcriptional regulator, MerR family; MerR family transcriptional regulator 1703214..1704386 Shewanella sediminis HAW-EB3 5609847 YP_001473177.1 CDS Ssed_1438 NC_009831.1 1705153 1706625 D KEGG: sbl:Sbal_2317 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1705153..1706625 Shewanella sediminis HAW-EB3 5609648 YP_001473178.1 CDS Ssed_1439 NC_009831.1 1706979 1707635 R KEGG: slo:Shew_2590 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(1706979..1707635) Shewanella sediminis HAW-EB3 5609649 YP_001473179.1 CDS Ssed_1440 NC_009831.1 1707604 1708329 R KEGG: slo:Shew_2589 protein of unknown function UPF0066; hypothetical protein complement(1707604..1708329) Shewanella sediminis HAW-EB3 5609650 YP_001473180.1 CDS Ssed_1441 NC_009831.1 1708390 1708773 R KEGG: shw:Sputw3181_1493 lipoprotein; lipoprotein complement(1708390..1708773) Shewanella sediminis HAW-EB3 5610954 YP_001473181.1 CDS Ssed_1442 NC_009831.1 1708896 1710215 R KEGG: slo:Shew_2587 hypothetical protein; hypothetical protein complement(1708896..1710215) Shewanella sediminis HAW-EB3 5610955 YP_001473182.1 CDS Ssed_1443 NC_009831.1 1710212 1713286 R KEGG: slo:Shew_2586 amidohydrolase; amidohydrolase complement(1710212..1713286) Shewanella sediminis HAW-EB3 5610956 YP_001473183.1 CDS Ssed_1444 NC_009831.1 1713446 1713838 R KEGG: slo:Shew_2585 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(1713446..1713838) Shewanella sediminis HAW-EB3 5610957 YP_001473184.1 CDS Ssed_1445 NC_009831.1 1714159 1714908 D KEGG: slo:Shew_2584 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 1714159..1714908 Shewanella sediminis HAW-EB3 5610943 YP_001473185.1 CDS Ssed_1446 NC_009831.1 1714908 1715831 D KEGG: slo:Shew_2583 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1714908..1715831 Shewanella sediminis HAW-EB3 5610944 YP_001473186.1 CDS Ssed_1447 NC_009831.1 1716289 1717854 D KEGG: slo:Shew_2582 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 1716289..1717854 Shewanella sediminis HAW-EB3 5610945 YP_001473187.1 CDS Ssed_1448 NC_009831.1 1717995 1720163 R KEGG: slo:Shew_2581 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp complement(1717995..1720163) Shewanella sediminis HAW-EB3 5610946 YP_001473188.1 CDS Ssed_1449 NC_009831.1 1720444 1721022 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1720444..1721022 Shewanella sediminis HAW-EB3 5610882 YP_001473189.1 CDS Ssed_1450 NC_009831.1 1721196 1721633 R KEGG: cps:CPS_3144 hypothetical protein; hypothetical protein complement(1721196..1721633) Shewanella sediminis HAW-EB3 5610883 YP_001473190.1 CDS Ssed_1451 NC_009831.1 1721765 1722343 R KEGG: shm:Shewmr7_0473 methylation site containing protein; methylation site containing protein complement(1721765..1722343) Shewanella sediminis HAW-EB3 5610884 YP_001473191.1 CDS Ssed_1452 NC_009831.1 1722727 1723383 R KEGG: slo:Shew_2576 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase complement(1722727..1723383) Shewanella sediminis HAW-EB3 5610885 YP_001473192.1 CDS Ssed_1453 NC_009831.1 1723400 1724113 R KEGG: shm:Shewmr7_2399 3-oxoacid CoA-transferase, A subunit; 3-oxoacid CoA-transferase complement(1723400..1724113) Shewanella sediminis HAW-EB3 5610893 YP_001473193.1 CDS Ssed_1454 NC_009831.1 1724127 1725017 R KEGG: slo:Shew_2574 pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(1724127..1725017) Shewanella sediminis HAW-EB3 5610894 YP_001473194.1 CDS Ssed_1455 NC_009831.1 1725019 1727094 R KEGG: slo:Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L complement(1725019..1727094) Shewanella sediminis HAW-EB3 5610895 YP_001473195.1 CDS Ssed_1456 NC_009831.1 1727096 1727935 R KEGG: slo:Shew_2572 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1727096..1727935) Shewanella sediminis HAW-EB3 5610889 YP_001473196.1 CDS Ssed_1457 NC_009831.1 1728064 1729671 R KEGG: sdn:Sden_2246 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(1728064..1729671) Shewanella sediminis HAW-EB3 5610890 YP_001473197.1 CDS Ssed_1458 NC_009831.1 1729740 1730909 R KEGG: slo:Shew_2570 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(1729740..1730909) Shewanella sediminis HAW-EB3 5610891 YP_001473198.1 CDS Ssed_1459 NC_009831.1 1730970 1731368 R KEGG: slo:Shew_2569 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1730970..1731368) Shewanella sediminis HAW-EB3 5610892 YP_001473199.1 CDS Ssed_1460 NC_009831.1 1731907 1733823 D KEGG: slo:Shew_2568 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 1731907..1733823 Shewanella sediminis HAW-EB3 5610871 YP_001473200.1 CDS Ssed_1461 NC_009831.1 1734400 1735953 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1734400..1735953 Shewanella sediminis HAW-EB3 5610872 YP_001473201.1 CDS Ssed_1462 NC_009831.1 1736017 1737429 R KEGG: hch:HCH_01482 HD-GYP domain; HD-GYP domain-containing protein complement(1736017..1737429) Shewanella sediminis HAW-EB3 5610873 YP_001473202.1 CDS Ssed_1463 NC_009831.1 1737611 1738510 D KEGG: pin:Ping_2245 hypothetical protein; hypothetical protein 1737611..1738510 Shewanella sediminis HAW-EB3 5610874 YP_001473203.1 CDS Ssed_1464 NC_009831.1 1738604 1739476 R KEGG: slo:Shew_2558 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1738604..1739476) Shewanella sediminis HAW-EB3 5610860 YP_001473204.1 CDS Ssed_1465 NC_009831.1 1739898 1740821 D KEGG: slo:Shew_2557 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1739898..1740821 Shewanella sediminis HAW-EB3 5610861 YP_001473205.1 CDS Ssed_1466 NC_009831.1 1740909 1741775 D KEGG: slo:Shew_2556 acyl-CoA thioesterase II; palmitoyl-CoA hydrolase 1740909..1741775 Shewanella sediminis HAW-EB3 5610862 YP_001473206.1 CDS Ssed_1467 NC_009831.1 1741906 1742295 D KEGG: slo:Shew_2555 hypothetical protein; hypothetical protein 1741906..1742295 Shewanella sediminis HAW-EB3 5610758 YP_001473207.1 CDS Ssed_1468 NC_009831.1 1742405 1742998 D KEGG: shm:Shewmr7_2669 protein of unknown function DUF925; hypothetical protein 1742405..1742998 Shewanella sediminis HAW-EB3 5610759 YP_001473208.1 CDS Ssed_1469 NC_009831.1 1743333 1743980 D receptor for colicin S4; outer membrane protein W 1743333..1743980 Shewanella sediminis HAW-EB3 5610760 YP_001473209.1 CDS Ssed_1470 NC_009831.1 1744071 1744838 R KEGG: slo:Shew_2553 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1744071..1744838) Shewanella sediminis HAW-EB3 5610761 YP_001473210.1 CDS Ssed_1471 NC_009831.1 1745326 1745727 D KEGG: slo:Shew_2552 hypothetical protein; hypothetical protein 1745326..1745727 Shewanella sediminis HAW-EB3 5610772 YP_001473211.1 CDS Ssed_1472 NC_009831.1 1745811 1746755 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1745811..1746755 Shewanella sediminis HAW-EB3 5610773 YP_001473212.1 CDS Ssed_1473 NC_009831.1 1747063 1748253 D KEGG: slo:Shew_1667 acetyl-CoA acetyltransferase; Acetyl-CoA C-acetyltransferase 1747063..1748253 Shewanella sediminis HAW-EB3 5610774 YP_001473213.1 CDS Ssed_1474 NC_009831.1 1748425 1749930 D KEGG: slo:Shew_1668 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1748425..1749930 Shewanella sediminis HAW-EB3 5610775 YP_001473214.1 CDS Ssed_1475 NC_009831.1 1750148 1751305 D KEGG: slo:Shew_1669 butyryl-CoA dehydrogenase; butyryl-CoA dehydrogenase 1750148..1751305 Shewanella sediminis HAW-EB3 5610616 YP_001473215.1 CDS Ssed_1476 NC_009831.1 1751447 1752220 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1751447..1752220 Shewanella sediminis HAW-EB3 5610617 YP_001473216.1 CDS Ssed_1477 NC_009831.1 1752220 1753380 D KEGG: sfr:Sfri_1342 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1752220..1753380 Shewanella sediminis HAW-EB3 5610618 YP_001473217.1 CDS Ssed_1478 NC_009831.1 1753553 1754479 D KEGG: shn:Shewana3_2766 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 1753553..1754479 Shewanella sediminis HAW-EB3 5610693 YP_001473218.1 CDS fabG NC_009831.1 1754484 1755242 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1754484..1755242 Shewanella sediminis HAW-EB3 5610694 YP_001473219.1 CDS Ssed_1480 NC_009831.1 1755480 1755791 R KEGG: pol:Bpro_3928 hypothetical protein; hypothetical protein complement(1755480..1755791) Shewanella sediminis HAW-EB3 5610695 YP_001473220.1 CDS Ssed_1481 NC_009831.1 1756141 1758075 D KEGG: sdn:Sden_1155 radical SAM; radical SAM family protein 1756141..1758075 Shewanella sediminis HAW-EB3 5610696 YP_001473221.1 CDS Ssed_1482 NC_009831.1 1758508 1758756 D KEGG: shw:Sputw3181_2696 hypothetical protein; hypothetical protein 1758508..1758756 Shewanella sediminis HAW-EB3 5610557 YP_001473222.1 CDS Ssed_1483 NC_009831.1 1758793 1760844 D KEGG: sbl:Sbal_1503 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 1758793..1760844 Shewanella sediminis HAW-EB3 5610558 YP_001473223.1 CDS Ssed_1484 NC_009831.1 1760964 1761344 R KEGG: sbl:Sbal_1504 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1760964..1761344) Shewanella sediminis HAW-EB3 5610559 YP_001473224.1 CDS Ssed_1485 NC_009831.1 1761485 1763743 D KEGG: sbl:Sbal_1505 copper-translocating P-type ATPase; copper-translocating P-type ATPase 1761485..1763743 Shewanella sediminis HAW-EB3 5610560 YP_001473225.1 CDS Ssed_1486 NC_009831.1 1763921 1765495 D KEGG: slo:Shew_1676 ABC transporter-related protein; ABC transporter-like protein 1763921..1765495 Shewanella sediminis HAW-EB3 5612678 YP_001473226.1 CDS Ssed_1487 NC_009831.1 1765809 1767020 R KEGG: ppr:PBPRB1458 NupC family protein (permease); NupC family protein (permease) complement(1765809..1767020) Shewanella sediminis HAW-EB3 5612679 YP_001473227.1 CDS Ssed_1488 NC_009831.1 1767595 1768956 R KEGG: slo:Shew_1677 leucyl aminopeptidase; leucyl aminopeptidase complement(1767595..1768956) Shewanella sediminis HAW-EB3 5612680 YP_001473228.1 CDS Ssed_1489 NC_009831.1 1769146 1769544 R KEGG: slo:Shew_1678 hypothetical protein; hypothetical protein complement(1769146..1769544) Shewanella sediminis HAW-EB3 5613000 YP_001473229.1 CDS Ssed_1490 NC_009831.1 1769950 1771407 D KEGG: ppr:PBPRA1527 transport protein, PTR2 family; PTR2 family transport protein 1769950..1771407 Shewanella sediminis HAW-EB3 5613001 YP_001473230.1 CDS Ssed_1491 NC_009831.1 1771527 1772282 R KEGG: ppr:PBPRA1876 hypothetical ribonuclease HI; ribonuclease HI complement(1771527..1772282) Shewanella sediminis HAW-EB3 5613002 YP_001473231.1 CDS Ssed_1492 NC_009831.1 1772432 1773040 R KEGG: shw:Sputw3181_2672 protein of unknown function DUF1415; hypothetical protein complement(1772432..1773040) Shewanella sediminis HAW-EB3 5613003 YP_001473232.1 CDS Ssed_1493 NC_009831.1 1773074 1773667 R KEGG: shw:Sputw3181_2671 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) complement(1773074..1773667) Shewanella sediminis HAW-EB3 5611977 YP_001473233.1 CDS Ssed_1494 NC_009831.1 1773863 1774426 D KEGG: slo:Shew_1686 hypothetical protein; hypothetical protein 1773863..1774426 Shewanella sediminis HAW-EB3 5611978 YP_001473234.1 CDS Ssed_1495 NC_009831.1 1774845 1775813 D hypothetical protein 1774845..1775813 Shewanella sediminis HAW-EB3 5611979 YP_001473235.1 CDS Ssed_1496 NC_009831.1 1775972 1778122 R KEGG: slo:Shew_1688 TonB-dependent receptor; TonB-dependent receptor complement(1775972..1778122) Shewanella sediminis HAW-EB3 5611980 YP_001473236.1 CDS Ssed_1497 NC_009831.1 1778291 1779454 R KEGG: vfi:VFA0834 NirV precursor; protein NirV complement(1778291..1779454) Shewanella sediminis HAW-EB3 5610360 YP_001473237.1 CDS Ssed_1498 NC_009831.1 1779969 1782032 R KEGG: slo:Shew_3044 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1779969..1782032) Shewanella sediminis HAW-EB3 5610361 YP_001473238.1 CDS Ssed_1499 NC_009831.1 1782455 1783309 R KEGG: she:Shewmr4_2564 hypothetical protein; hypothetical protein complement(1782455..1783309) Shewanella sediminis HAW-EB3 5610362 YP_001473239.1 CDS Ssed_1500 NC_009831.1 1783547 1784047 R KEGG: slo:Shew_1697 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(1783547..1784047) Shewanella sediminis HAW-EB3 5610363 YP_001473240.1 CDS Ssed_1501 NC_009831.1 1784230 1786488 D KEGG: slo:Shew_1698 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1784230..1786488 Shewanella sediminis HAW-EB3 5610815 YP_001473241.1 CDS Ssed_1502 NC_009831.1 1786659 1788311 D KEGG: slo:Shew_1699 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 1786659..1788311 Shewanella sediminis HAW-EB3 5610816 YP_001473242.1 CDS Ssed_1503 NC_009831.1 1788431 1789249 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1788431..1789249 Shewanella sediminis HAW-EB3 5610817 YP_001473243.1 CDS Ssed_1504 NC_009831.1 1789369 1790079 D regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 1789369..1790079 Shewanella sediminis HAW-EB3 5610713 YP_001473244.1 CDS Ssed_1505 NC_009831.1 1790478 1792484 D KEGG: shw:Sputw3181_2658 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 1790478..1792484 Shewanella sediminis HAW-EB3 5610714 YP_001473245.1 CDS Ssed_1506 NC_009831.1 1792680 1793042 D KEGG: slo:Shew_1709 HNH nuclease; hypothetical protein 1792680..1793042 Shewanella sediminis HAW-EB3 5610715 YP_001473246.1 CDS Ssed_1507 NC_009831.1 1793126 1793374 R KEGG: slo:Shew_1710 protein of unknown function DUF1289; hypothetical protein complement(1793126..1793374) Shewanella sediminis HAW-EB3 5610716 YP_001473247.1 CDS Ssed_1508 NC_009831.1 1793675 1794853 D KEGG: slo:Shew_1711 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 1793675..1794853 Shewanella sediminis HAW-EB3 5613533 YP_001473248.1 CDS Ssed_1509 NC_009831.1 1795234 1796514 D KEGG: spc:Sputcn32_1444 hypothetical protein; hypothetical protein 1795234..1796514 Shewanella sediminis HAW-EB3 5613534 YP_001473249.1 CDS Ssed_1510 NC_009831.1 1796774 1797823 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1796774..1797823 Shewanella sediminis HAW-EB3 5613535 YP_001473250.1 CDS Ssed_1511 NC_009831.1 1797987 1798874 D KEGG: sbl:Sbal_1551 alpha/beta hydrolase fold; alpha/beta hydrolase 1797987..1798874 Shewanella sediminis HAW-EB3 5613536 YP_001473251.1 CDS Ssed_1512 NC_009831.1 1798971 1800728 D Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase 1798971..1800728 Shewanella sediminis HAW-EB3 5613345 YP_001473252.1 CDS Ssed_1513 NC_009831.1 1800734 1801831 D KEGG: ppr:PBPRA1465 steroid dehydrogenase; steroid dehydrogenase 1800734..1801831 Shewanella sediminis HAW-EB3 5613346 YP_001473253.1 CDS Ssed_1514 NC_009831.1 1801989 1802438 D KEGG: sdn:Sden_1374 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1801989..1802438 Shewanella sediminis HAW-EB3 5613347 YP_001473254.1 CDS Ssed_1515 NC_009831.1 1802495 1803343 R KEGG: slo:Shew_2547 pseudouridine synthase; pseudouridine synthase complement(1802495..1803343) Shewanella sediminis HAW-EB3 5613389 YP_001473255.1 CDS Ssed_1516 NC_009831.1 1803411 1803740 R KEGG: maq:Maqu_1061 small multidrug resistance protein; small multidrug resistance protein complement(1803411..1803740) Shewanella sediminis HAW-EB3 5613390 YP_001473256.1 CDS Ssed_1517 NC_009831.1 1804267 1806015 D KEGG: sbl:Sbal_1561 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 1804267..1806015 Shewanella sediminis HAW-EB3 5613391 YP_001473257.1 CDS Ssed_1518 NC_009831.1 1806057 1807214 R KEGG: slo:Shew_2528 transcriptional regulator, CdaR; transcriptional regulator CdaR complement(1806057..1807214) Shewanella sediminis HAW-EB3 5613392 YP_001473258.1 CDS Ssed_1519 NC_009831.1 1807414 1808133 R hypothetical protein complement(1807414..1808133) Shewanella sediminis HAW-EB3 5613215 YP_001473259.1 CDS Ssed_1520 NC_009831.1 1808366 1809337 R KEGG: saz:Sama_1202 GGDEF domain-like protein; diguanylate cyclase complement(1808366..1809337) Shewanella sediminis HAW-EB3 5613216 YP_001473260.1 CDS Ssed_1521 NC_009831.1 1809479 1810123 R KEGG: shm:Shewmr7_2582 phage SPO1 DNA polymerase domain protein; phage SPO1 DNA polymerase domain-containing protein complement(1809479..1810123) Shewanella sediminis HAW-EB3 5613217 YP_001473261.1 CDS Ssed_1522 NC_009831.1 1810167 1810826 R KEGG: sbl:Sbal_1586 hypothetical protein; hypothetical protein complement(1810167..1810826) Shewanella sediminis HAW-EB3 5613218 YP_001473262.1 CDS Ssed_1523 NC_009831.1 1811126 1813237 R KEGG: slo:Shew_2527 outer membrane protein precursor MtrB; outer membrane protein MtrB complement(1811126..1813237) Shewanella sediminis HAW-EB3 5613299 YP_001473263.1 CDS Ssed_1524 NC_009831.1 1813253 1814254 R KEGG: slo:Shew_2526 cytochrome c family protein; cytochrome c family protein complement(1813253..1814254) Shewanella sediminis HAW-EB3 5613300 YP_001473264.1 CDS Ssed_1525 NC_009831.1 1814334 1816316 R KEGG: sfr:Sfri_2637 decaheme cytochrome c; decaheme cytochrome c complement(1814334..1816316) Shewanella sediminis HAW-EB3 5613301 YP_001473265.1 CDS Ssed_1526 NC_009831.1 1816751 1818967 R KEGG: slo:Shew_2524 decaheme cytochrome c; decaheme cytochrome c complement(1816751..1818967) Shewanella sediminis HAW-EB3 5613219 YP_001473266.1 CDS Ssed_1527 NC_009831.1 1819448 1821616 R KEGG: slo:Shew_2522 decaheme cytochrome c; decaheme cytochrome c complement(1819448..1821616) Shewanella sediminis HAW-EB3 5613220 YP_001473267.1 CDS Ssed_1528 NC_009831.1 1821682 1823622 R KEGG: slo:Shew_2521 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF complement(1821682..1823622) Shewanella sediminis HAW-EB3 5613221 YP_001473268.1 CDS Ssed_1529 NC_009831.1 1823757 1825892 R KEGG: slo:Shew_2520 outer membrane protein; outer membrane protein complement(1823757..1825892) Shewanella sediminis HAW-EB3 5613222 YP_001473269.1 CDS Ssed_1530 NC_009831.1 1825908 1826873 R KEGG: she:Shewmr4_2506 cytochrome c family protein; cytochrome c family protein complement(1825908..1826873) Shewanella sediminis HAW-EB3 5613496 YP_001473270.1 CDS Ssed_1531 NC_009831.1 1827301 1827555 D KEGG: shw:Sputw3181_2621 FeoA family protein; FeoA family protein 1827301..1827555 Shewanella sediminis HAW-EB3 5613497 YP_001473271.1 CDS Ssed_1532 NC_009831.1 1827548 1829842 D KEGG: slo:Shew_2517 ferrous iron transport protein B; ferrous iron transport protein B 1827548..1829842 Shewanella sediminis HAW-EB3 5613498 YP_001473272.1 CDS Ssed_1533 NC_009831.1 1830005 1831675 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1830005..1831675 Shewanella sediminis HAW-EB3 5613499 YP_001473273.1 CDS Ssed_1534 NC_009831.1 1831844 1832440 R KEGG: slo:Shew_2515 protein of unknown function DUF1282; hypothetical protein complement(1831844..1832440) Shewanella sediminis HAW-EB3 5610724 YP_001473274.1 CDS Ssed_1535 NC_009831.1 1832806 1833582 D KEGG: slo:Shew_2514 tRNA--hydroxylase; tRNA--hydroxylase 1832806..1833582 Shewanella sediminis HAW-EB3 5610725 YP_001473275.1 CDS Ssed_1536 NC_009831.1 1833661 1834389 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1833661..1834389) Shewanella sediminis HAW-EB3 5610726 YP_001473276.1 CDS Ssed_1537 NC_009831.1 1834399 1834962 R KEGG: slo:Shew_2512 peptidylprolyl isomerase; peptidyl-prolyl isomerase complement(1834399..1834962) Shewanella sediminis HAW-EB3 5612122 YP_001473277.1 CDS cysS NC_009831.1 1835163 1836542 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1835163..1836542 Shewanella sediminis HAW-EB3 5612123 YP_001473278.1 CDS Ssed_1539 NC_009831.1 1836651 1837505 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1836651..1837505) Shewanella sediminis HAW-EB3 5612124 YP_001473279.1 CDS tig NC_009831.1 1838635 1839939 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1838635..1839939 Shewanella sediminis HAW-EB3 5610605 YP_001473280.1 CDS clpP NC_009831.1 1840030 1840641 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1840030..1840641 Shewanella sediminis HAW-EB3 5613683 YP_001473281.1 CDS clpX NC_009831.1 1840725 1842002 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1840725..1842002 Shewanella sediminis HAW-EB3 5613684 YP_001473282.1 CDS Ssed_1543 NC_009831.1 1842153 1844498 D KEGG: slo:Shew_2506 ATP-dependent protease La; endopeptidase La 1842153..1844498 Shewanella sediminis HAW-EB3 5613685 YP_001473283.1 CDS Ssed_1544 NC_009831.1 1844772 1845044 D KEGG: slo:Shew_2505 histone family protein DNA-binding protein; histone family protein DNA-binding protein 1844772..1845044 Shewanella sediminis HAW-EB3 5613686 YP_001473284.1 CDS Ssed_1545 NC_009831.1 1845253 1847118 D KEGG: slo:Shew_2504 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1845253..1847118 Shewanella sediminis HAW-EB3 5614154 YP_001473285.1 CDS Ssed_1546 NC_009831.1 1847387 1847596 R KEGG: slo:Shew_3338 TOBE domain protein; TOBE domain-containing protein complement(1847387..1847596) Shewanella sediminis HAW-EB3 5614155 YP_001473286.1 CDS Ssed_1547 NC_009831.1 1847748 1848950 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(1847748..1848950) Shewanella sediminis HAW-EB3 5614156 YP_001473287.1 CDS Ssed_1548 NC_009831.1 1849076 1849861 R KEGG: shm:Shewmr7_2556 ABC transporter related; ABC transporter complement(1849076..1849861) Shewanella sediminis HAW-EB3 5614157 YP_001473288.1 CDS Ssed_1549 NC_009831.1 1849836 1850849 R KEGG: slo:Shew_2501 oligopeptide/dipeptide ABC transporter, ATPase subunit; oligopeptide/dipeptide ABC transporter ATPase complement(1849836..1850849) Shewanella sediminis HAW-EB3 5613825 YP_001473289.1 CDS Ssed_1550 NC_009831.1 1850867 1851757 R KEGG: slo:Shew_2500 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1850867..1851757) Shewanella sediminis HAW-EB3 5613826 YP_001473290.1 CDS Ssed_1551 NC_009831.1 1851744 1852775 R KEGG: slo:Shew_2499 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1851744..1852775) Shewanella sediminis HAW-EB3 5613827 YP_001473291.1 CDS Ssed_1552 NC_009831.1 1852775 1854430 R KEGG: slo:Shew_2498 extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1852775..1854430) Shewanella sediminis HAW-EB3 5612197 YP_001473292.1 CDS Ssed_1553 NC_009831.1 1854505 1855572 R KEGG: slo:Shew_2497 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(1854505..1855572) Shewanella sediminis HAW-EB3 5612198 YP_001473293.1 CDS Ssed_1554 NC_009831.1 1855750 1856433 D KEGG: slo:Shew_2496 phage shock protein A, PspA; phage shock protein A, PspA 1855750..1856433 Shewanella sediminis HAW-EB3 5612199 YP_001473294.1 CDS pspB NC_009831.1 1856454 1856687 D acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1856454..1856687 Shewanella sediminis HAW-EB3 5612200 YP_001473295.1 CDS Ssed_1556 NC_009831.1 1856680 1857075 D KEGG: slo:Shew_2494 phage shock protein C, PspC; phage shock protein C, PspC 1856680..1857075 Shewanella sediminis HAW-EB3 5612934 YP_001473296.1 CDS Ssed_1557 NC_009831.1 1857125 1858579 D KEGG: slo:Shew_2493 protein of unknown function DUF463, YcjX family protein; hypothetical protein 1857125..1858579 Shewanella sediminis HAW-EB3 5612935 YP_001473297.1 CDS Ssed_1558 NC_009831.1 1858670 1859776 D KEGG: slo:Shew_2492 conserved hypothetical protein 1620; hypothetical protein 1858670..1859776 Shewanella sediminis HAW-EB3 5612936 YP_001473298.1 CDS Ssed_1559 NC_009831.1 1859954 1861132 D KEGG: she:Shewmr4_2477 methionine gamma-lyase; methionine gamma-lyase 1859954..1861132 Shewanella sediminis HAW-EB3 5612937 YP_001473299.1 CDS Ssed_1560 NC_009831.1 1861251 1862648 R KEGG: slo:Shew_2490 anion transporter; anion transporter complement(1861251..1862648) Shewanella sediminis HAW-EB3 5613183 YP_001473300.1 CDS Ssed_1561 NC_009831.1 1863047 1863364 D KEGG: spc:Sputcn32_1508 competence protein ComEA helix-hairpin-helix repeat protein; helix-hairpin-helix repeat-containing competence protein ComEA 1863047..1863364 Shewanella sediminis HAW-EB3 5613184 YP_001473301.1 CDS Ssed_1562 NC_009831.1 1863728 1863997 R KEGG: shn:Shewana3_2635 hypothetical protein; hypothetical protein complement(1863728..1863997) Shewanella sediminis HAW-EB3 5611724 YP_001473302.1 CDS Ssed_1563 NC_009831.1 1864388 1865080 R KEGG: slo:Shew_2486 hypothetical protein; hypothetical protein complement(1864388..1865080) Shewanella sediminis HAW-EB3 5612860 YP_001473303.1 CDS Ssed_1564 NC_009831.1 1865131 1865799 R KEGG: slo:Shew_2485 primosomal replication protein N''; primosomal replication protein N'' complement(1865131..1865799) Shewanella sediminis HAW-EB3 5612861 YP_001473304.1 CDS Ssed_1565 NC_009831.1 1865796 1866569 R KEGG: slo:Shew_2484 protein of unknown function DUF81; hypothetical protein complement(1865796..1866569) Shewanella sediminis HAW-EB3 5612862 YP_001473305.1 CDS dinG NC_009831.1 1866578 1868656 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(1866578..1868656) Shewanella sediminis HAW-EB3 5612863 YP_001473306.1 CDS Ssed_1567 NC_009831.1 1868850 1871231 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 1868850..1871231 Shewanella sediminis HAW-EB3 5612554 YP_001473307.1 CDS Ssed_1568 NC_009831.1 1871461 1872672 D KEGG: sbl:Sbal_1631 porin, gram-negative type; porin 1871461..1872672 Shewanella sediminis HAW-EB3 5612555 YP_001473308.1 CDS Ssed_1569 NC_009831.1 1873498 1876107 D KEGG: slo:Shew_2480 TonB-dependent receptor; TonB-dependent receptor 1873498..1876107 Shewanella sediminis HAW-EB3 5612556 YP_001473309.1 CDS Ssed_1570 NC_009831.1 1876204 1877160 D KEGG: slo:Shew_2479 methyltransferase type 11; type 11 methyltransferase 1876204..1877160 Shewanella sediminis HAW-EB3 5612557 YP_001473310.1 CDS Ssed_1571 NC_009831.1 1877755 1878537 D KEGG: saz:Sama_1254 conserved hypothetical protein; hypothetical protein 1877755..1878537 Shewanella sediminis HAW-EB3 5612375 YP_001473311.1 CDS Ssed_1572 NC_009831.1 1878537 1879892 D KEGG: slo:Shew_2477 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1878537..1879892 Shewanella sediminis HAW-EB3 5612376 YP_001473312.1 CDS Ssed_1573 NC_009831.1 1879892 1880416 D KEGG: sdn:Sden_2423 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1879892..1880416 Shewanella sediminis HAW-EB3 5612377 YP_001473313.1 CDS Ssed_1574 NC_009831.1 1880430 1880834 D KEGG: sdn:Sden_2422 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1880430..1880834 Shewanella sediminis HAW-EB3 5610852 YP_001473314.1 CDS Ssed_1575 NC_009831.1 1880836 1881456 D KEGG: slo:Shew_2474 TonB family protein; TonB family protein 1880836..1881456 Shewanella sediminis HAW-EB3 5610853 YP_001473315.1 CDS Ssed_1576 NC_009831.1 1881459 1882718 D KEGG: sfr:Sfri_2621 tetratricopeptide domain protein; hypothetical protein 1881459..1882718 Shewanella sediminis HAW-EB3 5610854 YP_001473316.1 CDS Ssed_1577 NC_009831.1 1882783 1883292 R KEGG: slo:Shew_2472 diguanylate cyclase; diguanylate cyclase complement(1882783..1883292) Shewanella sediminis HAW-EB3 5610855 YP_001473317.1 CDS Ssed_1578 NC_009831.1 1883416 1885266 D KEGG: slo:Shew_2471 protein of unknown function DUF885; hypothetical protein 1883416..1885266 Shewanella sediminis HAW-EB3 5612465 YP_001473318.1 CDS Ssed_1579 NC_009831.1 1885416 1885694 D KEGG: slo:Shew_2470 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1885416..1885694 Shewanella sediminis HAW-EB3 5612466 YP_001473319.1 CDS Ssed_1580 NC_009831.1 1885720 1886256 D KEGG: sbl:Sbal_1649 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1885720..1886256 Shewanella sediminis HAW-EB3 5612467 YP_001473320.1 CDS Ssed_1581 NC_009831.1 1886418 1886651 D KEGG: slo:Shew_2468 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 1886418..1886651 Shewanella sediminis HAW-EB3 5612468 YP_001473321.1 CDS Ssed_1582 NC_009831.1 1886669 1887055 D KEGG: slo:Shew_2467 protein of unknown function DUF1260; hypothetical protein 1886669..1887055 Shewanella sediminis HAW-EB3 5612357 YP_001473322.1 CDS Ssed_1583 NC_009831.1 1887329 1889299 D KEGG: slo:Shew_2466 hypothetical protein; hypothetical protein 1887329..1889299 Shewanella sediminis HAW-EB3 5612358 YP_001473323.1 CDS Ssed_1584 NC_009831.1 1889375 1890262 R KEGG: son:SO2847 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1889375..1890262) Shewanella sediminis HAW-EB3 5612359 YP_001473324.1 CDS Ssed_1585 NC_009831.1 1890409 1891188 D KEGG: pin:Ping_1433 permease with 5 transmembrane domains; permease 1890409..1891188 Shewanella sediminis HAW-EB3 5612126 YP_001473325.1 CDS avtA NC_009831.1 1892094 1893353 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(1892094..1893353) Shewanella sediminis HAW-EB3 5612127 YP_001473326.1 CDS Ssed_1587 NC_009831.1 1893672 1894928 R KEGG: tcx:Tcr_1067 hypothetical protein; hypothetical protein complement(1893672..1894928) Shewanella sediminis HAW-EB3 5612128 YP_001473327.1 CDS Ssed_1588 NC_009831.1 1895262 1896407 D KEGG: slo:Shew_2457 nuclease SbcCD, D subunit; nuclease SbcCD subunit D 1895262..1896407 Shewanella sediminis HAW-EB3 5612129 YP_001473328.1 CDS Ssed_1589 NC_009831.1 1896404 1899460 D KEGG: shn:Shewana3_2611 exonuclease SbcC; exonuclease SbcC 1896404..1899460 Shewanella sediminis HAW-EB3 5612023 YP_001473329.1 CDS Ssed_1590 NC_009831.1 1899859 1901133 D KEGG: slo:Shew_2455 peptidase M23B; peptidase M23B 1899859..1901133 Shewanella sediminis HAW-EB3 5612024 YP_001473330.1 CDS Ssed_1591 NC_009831.1 1901458 1902150 D KEGG: sbl:Sbal_4021 ABC-type amino acid transport/signal transduction system; amino acid ABC transporter substrate-binding protein 1901458..1902150 Shewanella sediminis HAW-EB3 5612025 YP_001473331.1 CDS Ssed_1592 NC_009831.1 1902147 1902650 R KEGG: shm:Shewmr7_2516 protein of unknown function DUF45; hypothetical protein complement(1902147..1902650) Shewanella sediminis HAW-EB3 5612026 YP_001473332.1 CDS Ssed_1593 NC_009831.1 1902998 1903444 R KEGG: slo:Shew_2453 hypothetical protein; hypothetical protein complement(1902998..1903444) Shewanella sediminis HAW-EB3 5611759 YP_001473333.1 CDS Ssed_1594 NC_009831.1 1903572 1904969 R KEGG: slo:Shew_2452 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1903572..1904969) Shewanella sediminis HAW-EB3 5611760 YP_001473334.1 CDS Ssed_1595 NC_009831.1 1905177 1906109 D KEGG: shw:Sputw3181_2561 patatin; patatin 1905177..1906109 Shewanella sediminis HAW-EB3 5611761 YP_001473335.1 CDS Ssed_1596 NC_009831.1 1906188 1907186 R KEGG: slo:Shew_2563 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(1906188..1907186) Shewanella sediminis HAW-EB3 5611762 YP_001473336.1 CDS Ssed_1597 NC_009831.1 1907426 1907908 D KEGG: slo:Shew_2562 transcriptional regulator, MarR family; MarR family transcriptional regulator 1907426..1907908 Shewanella sediminis HAW-EB3 5611959 YP_001473337.1 CDS Ssed_1598 NC_009831.1 1908466 1908978 D hypothetical protein 1908466..1908978 Shewanella sediminis HAW-EB3 5611960 YP_001473338.1 CDS Ssed_1599 NC_009831.1 1909199 1909921 D KEGG: slo:Shew_2450 hypothetical protein; hypothetical protein 1909199..1909921 Shewanella sediminis HAW-EB3 5611961 YP_001473339.1 CDS Ssed_1600 NC_009831.1 1910178 1912295 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1910178..1912295 Shewanella sediminis HAW-EB3 5611767 YP_001473340.1 CDS nrdG NC_009831.1 1912492 1912956 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1912492..1912956 Shewanella sediminis HAW-EB3 5611768 YP_001473341.1 CDS Ssed_1602 NC_009831.1 1913078 1913434 D KEGG: sdn:Sden_1446 hypothetical protein; hypothetical protein 1913078..1913434 Shewanella sediminis HAW-EB3 5611769 YP_001473342.1 CDS ribA NC_009831.1 1913730 1914347 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1913730..1914347 Shewanella sediminis HAW-EB3 5611770 YP_001473343.1 CDS Ssed_1604 NC_009831.1 1914419 1915237 D KEGG: sfr:Sfri_2437 hypothetical protein; hypothetical protein 1914419..1915237 Shewanella sediminis HAW-EB3 5611659 YP_001473344.1 CDS Ssed_1605 NC_009831.1 1915261 1916148 R KEGG: cps:CPS_1457 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1915261..1916148) Shewanella sediminis HAW-EB3 5611660 YP_001473345.1 CDS Ssed_1606 NC_009831.1 1916292 1917269 D KEGG: ppr:PBPRB0221 adh_zinc, zinc-binding dehydrogenases; adh_zinc, zinc-binding dehydrogenase 1916292..1917269 Shewanella sediminis HAW-EB3 5611661 YP_001473346.1 CDS Ssed_1607 NC_009831.1 1917303 1918022 D KEGG: nha:Nham_2100 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1917303..1918022 Shewanella sediminis HAW-EB3 5611662 YP_001473347.1 CDS Ssed_1608 NC_009831.1 1918105 1919637 R KEGG: sbl:Sbal_0106 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1918105..1919637) Shewanella sediminis HAW-EB3 5613339 YP_001473348.1 CDS Ssed_1609 NC_009831.1 1919845 1920363 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1919845..1920363 Shewanella sediminis HAW-EB3 5613340 YP_001473349.1 CDS Ssed_1610 NC_009831.1 1920475 1920831 R KEGG: slo:Shew_2444 hypothetical protein; hypothetical protein complement(1920475..1920831) Shewanella sediminis HAW-EB3 5613341 YP_001473350.1 CDS Ssed_1611 NC_009831.1 1920959 1923367 R KEGG: slo:Shew_2443 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(1920959..1923367) Shewanella sediminis HAW-EB3 5611578 YP_001473351.1 CDS Ssed_1612 NC_009831.1 1923994 1924392 R KEGG: shm:Shewmr7_1456 rhodanese domain protein; rhodanese domain-containing protein complement(1923994..1924392) Shewanella sediminis HAW-EB3 5611579 YP_001473352.1 CDS Ssed_1613 NC_009831.1 1924502 1924720 R KEGG: saz:Sama_2183 conserved hypothetical protein; hypothetical protein complement(1924502..1924720) Shewanella sediminis HAW-EB3 5611580 YP_001473353.1 CDS Ssed_1614 NC_009831.1 1924798 1928097 R KEGG: sbl:Sbal_2775 acriflavin resistance protein; acriflavin resistance protein complement(1924798..1928097) Shewanella sediminis HAW-EB3 5611581 YP_001473354.1 CDS Ssed_1615 NC_009831.1 1928108 1929151 R KEGG: spc:Sputcn32_2473 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1928108..1929151) Shewanella sediminis HAW-EB3 5613739 YP_001473355.1 CDS Ssed_1616 NC_009831.1 1929311 1930027 R KEGG: slo:Shew_2438 protein of unknown function DUF541; hypothetical protein complement(1929311..1930027) Shewanella sediminis HAW-EB3 5613740 YP_001473356.1 CDS Ssed_1617 NC_009831.1 1930111 1930494 R KEGG: slo:Shew_2437 hypothetical protein; hypothetical protein complement(1930111..1930494) Shewanella sediminis HAW-EB3 5613741 YP_001473357.1 CDS Ssed_1618 NC_009831.1 1930627 1931949 R KEGG: sbl:Sbal_2771 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(1930627..1931949) Shewanella sediminis HAW-EB3 5613742 YP_001473358.1 CDS Ssed_1619 NC_009831.1 1932317 1933768 R KEGG: slo:Shew_2435 sodium/proline symporter; sodium/proline symporter complement(1932317..1933768) Shewanella sediminis HAW-EB3 5611560 YP_001473359.1 CDS Ssed_1620 NC_009831.1 1933919 1934623 R KEGG: slo:Shew_2434 hypothetical protein; hypothetical protein complement(1933919..1934623) Shewanella sediminis HAW-EB3 5611561 YP_001473360.1 CDS Ssed_1621 NC_009831.1 1934616 1935179 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1934616..1935179) Shewanella sediminis HAW-EB3 5611562 YP_001473361.1 CDS Ssed_1622 NC_009831.1 1935287 1936921 R KEGG: slo:Shew_2432 hypothetical protein; hypothetical protein complement(1935287..1936921) Shewanella sediminis HAW-EB3 5611384 YP_001473362.1 CDS Ssed_1623 NC_009831.1 1937004 1938938 R KEGG: shn:Shewana3_1455 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1937004..1938938) Shewanella sediminis HAW-EB3 5611385 YP_001473363.1 CDS Ssed_1624 NC_009831.1 1938941 1939933 R KEGG: shw:Sputw3181_1544 von Willebrand factor, type A; von Willebrand factor A complement(1938941..1939933) Shewanella sediminis HAW-EB3 5611386 YP_001473364.1 CDS Ssed_1625 NC_009831.1 1939927 1940442 R KEGG: slo:Shew_2429 hypothetical protein; hypothetical protein complement(1939927..1940442) Shewanella sediminis HAW-EB3 5611387 YP_001473365.1 CDS Ssed_1626 NC_009831.1 1940442 1941371 R KEGG: slo:Shew_2428 protein of unknown function DUF58; hypothetical protein complement(1940442..1941371) Shewanella sediminis HAW-EB3 5611388 YP_001473366.1 CDS Ssed_1627 NC_009831.1 1941372 1942328 R KEGG: shw:Sputw3181_1547 ATPase associated with various cellular activities, AAA_3; ATPase complement(1941372..1942328) Shewanella sediminis HAW-EB3 5611389 YP_001473367.1 CDS fadI NC_009831.1 1942774 1944084 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1942774..1944084 Shewanella sediminis HAW-EB3 5611390 YP_001473368.1 CDS fadJ NC_009831.1 1944090 1946237 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1944090..1946237 Shewanella sediminis HAW-EB3 5611391 YP_001473369.1 CDS Ssed_1630 NC_009831.1 1946507 1946731 D KEGG: slo:Shew_2424 hypothetical protein; hypothetical protein 1946507..1946731 Shewanella sediminis HAW-EB3 5614034 YP_001473370.1 CDS Ssed_1631 NC_009831.1 1946865 1946984 R KEGG: slo:Shew_2423 hypothetical protein; hypothetical protein complement(1946865..1946984) Shewanella sediminis HAW-EB3 5614035 YP_001473371.1 CDS Ssed_1632 NC_009831.1 1947003 1947608 R KEGG: slo:Shew_2422 hypothetical protein; hypothetical protein complement(1947003..1947608) Shewanella sediminis HAW-EB3 5614036 YP_001473372.1 CDS Ssed_1633 NC_009831.1 1947752 1952095 R KEGG: slo:Shew_2421 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(1947752..1952095) Shewanella sediminis HAW-EB3 5611009 YP_001473373.1 CDS Ssed_1634 NC_009831.1 1952522 1955311 R KEGG: slo:Shew_2420 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(1952522..1955311) Shewanella sediminis HAW-EB3 5611010 YP_001473374.1 CDS Ssed_1635 NC_009831.1 1955580 1956068 D KEGG: slo:Shew_2419 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase, SixA 1955580..1956068 Shewanella sediminis HAW-EB3 5611011 YP_001473375.1 CDS Ssed_1636 NC_009831.1 1956330 1956860 R KEGG: slo:Shew_2418 Smr protein/MutS2; hypothetical protein complement(1956330..1956860) Shewanella sediminis HAW-EB3 5611012 YP_001473376.1 CDS Ssed_1637 NC_009831.1 1957036 1957980 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1957036..1957980 Shewanella sediminis HAW-EB3 5611035 YP_001473377.1 CDS Ssed_1638 NC_009831.1 1958129 1959223 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1958129..1959223 Shewanella sediminis HAW-EB3 5611036 YP_001473378.1 CDS Ssed_1639 NC_009831.1 1959434 1960591 D KEGG: shw:Sputw3181_1558 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1959434..1960591 Shewanella sediminis HAW-EB3 5611037 YP_001473379.1 CDS Ssed_1640 NC_009831.1 1960677 1961801 D KEGG: son:SO3077 hypothetical protein; hypothetical protein 1960677..1961801 Shewanella sediminis HAW-EB3 5611038 YP_001473380.1 CDS Ssed_1641 NC_009831.1 1961866 1962135 D KEGG: shw:Sputw3181_1560 hypothetical protein; hypothetical protein 1961866..1962135 Shewanella sediminis HAW-EB3 5611046 YP_001473381.1 CDS Ssed_1642 NC_009831.1 1962152 1962685 D KEGG: sfr:Sfri_2663 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1962152..1962685 Shewanella sediminis HAW-EB3 5611047 YP_001473382.1 CDS Ssed_1643 NC_009831.1 1962782 1964920 R KEGG: slo:Shew_2411 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1962782..1964920) Shewanella sediminis HAW-EB3 5611048 YP_001473383.1 CDS Ssed_1644 NC_009831.1 1965031 1966242 D KEGG: slo:Shew_2410 beta-ketoacyl synthase; beta-ketoacyl synthase 1965031..1966242 Shewanella sediminis HAW-EB3 5611049 YP_001473384.1 CDS Ssed_1645 NC_009831.1 1966518 1967552 R KEGG: vvy:VVA0936 conserved hypothetical protein; hypothetical protein complement(1966518..1967552) Shewanella sediminis HAW-EB3 5611054 YP_001473385.1 CDS Ssed_1646 NC_009831.1 1967540 1968121 R KEGG: vvy:VVA0935 protein-glutamate methylesterase; protein-glutamate methylesterase complement(1967540..1968121) Shewanella sediminis HAW-EB3 5611055 YP_001473386.1 CDS Ssed_1647 NC_009831.1 1968125 1968964 R KEGG: vvy:VVA0934 methylase of chemotaxis methyl-accepting protein; protein-glutamate O-methyltransferase complement(1968125..1968964) Shewanella sediminis HAW-EB3 5611056 YP_001473387.1 CDS Ssed_1648 NC_009831.1 1968966 1973090 R KEGG: vvy:VVA0933 signal transduction histidine kinase; histidine kinase complement(1968966..1973090) Shewanella sediminis HAW-EB3 5611317 YP_001473388.1 CDS Ssed_1649 NC_009831.1 1973396 1974559 D KEGG: she:Shewmr4_1423 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit 1973396..1974559 Shewanella sediminis HAW-EB3 5611318 YP_001473389.1 CDS Ssed_1650 NC_009831.1 1974562 1975578 D KEGG: slo:Shew_2308 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 1974562..1975578 Shewanella sediminis HAW-EB3 5611319 YP_001473390.1 CDS Ssed_1651 NC_009831.1 1975792 1978629 D KEGG: slo:Shew_2307 hypothetical protein; hypothetical protein 1975792..1978629 Shewanella sediminis HAW-EB3 5611320 YP_001473391.1 CDS truA NC_009831.1 1978822 1979607 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1978822..1979607 Shewanella sediminis HAW-EB3 5610950 YP_001473392.1 CDS Ssed_1653 NC_009831.1 1979683 1980948 D KEGG: she:Shewmr4_1427 FolC bifunctional protein; dihydrofolate synthase 1979683..1980948 Shewanella sediminis HAW-EB3 5610951 YP_001473393.1 CDS Ssed_1654 NC_009831.1 1981086 1981706 D KEGG: slo:Shew_2304 sporulation domain protein; sporulation domain-containing protein 1981086..1981706 Shewanella sediminis HAW-EB3 5610952 YP_001473394.1 CDS Ssed_1655 NC_009831.1 1981820 1982308 D KEGG: slo:Shew_2303 colicin V production protein; colicin V production protein 1981820..1982308 Shewanella sediminis HAW-EB3 5610953 YP_001473395.1 CDS Ssed_1656 NC_009831.1 1982410 1983924 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1982410..1983924 Shewanella sediminis HAW-EB3 5610188 YP_001473396.1 CDS Ssed_1657 NC_009831.1 1984188 1984664 D KEGG: dps:DP3020 hypothetical protein; hypothetical protein 1984188..1984664 Shewanella sediminis HAW-EB3 5610189 YP_001473397.1 CDS Ssed_1658 NC_009831.1 1984830 1986869 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1984830..1986869 Shewanella sediminis HAW-EB3 5610190 YP_001473398.1 CDS Ssed_1659 NC_009831.1 1986886 1987086 R KEGG: slo:Shew_2284 hypothetical protein; hypothetical protein complement(1986886..1987086) Shewanella sediminis HAW-EB3 5610415 YP_001473399.1 CDS Ssed_1660 NC_009831.1 1987629 1988495 D KEGG: cps:CPS_4002 hypothetical protein; hypothetical protein 1987629..1988495 Shewanella sediminis HAW-EB3 5610416 YP_001473400.1 CDS Ssed_1661 NC_009831.1 1989276 1990565 R KEGG: slo:Shew_2270 alpha/beta hydrolase fold; alpha/beta hydrolase complement(1989276..1990565) Shewanella sediminis HAW-EB3 5610417 YP_001473401.1 CDS Ssed_1662 NC_009831.1 1990806 1991477 D KEGG: slo:Shew_2269 beta-lactamase domain protein; beta-lactamase domain-containing protein 1990806..1991477 Shewanella sediminis HAW-EB3 5610418 YP_001473402.1 CDS Ssed_1663 NC_009831.1 1991813 1992325 D KEGG: son:SO3047 hypothetical protein; hypothetical protein 1991813..1992325 Shewanella sediminis HAW-EB3 5610383 YP_001473403.1 CDS Ssed_1664 NC_009831.1 1992640 1994088 D KEGG: slo:Shew_2263 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1992640..1994088 Shewanella sediminis HAW-EB3 5610384 YP_001473404.1 CDS Ssed_1665 NC_009831.1 1994466 1996484 R KEGG: pmy:Pmen_2951 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(1994466..1996484) Shewanella sediminis HAW-EB3 5610385 YP_001473405.1 CDS Ssed_1666 NC_009831.1 1996593 1997675 D KEGG: pmy:Pmen_2953 helix-turn-helix-domain containing protein, AraC type; helix-turn-helix-domain-containing protein 1996593..1997675 Shewanella sediminis HAW-EB3 5610386 YP_001473406.1 CDS Ssed_1667 NC_009831.1 1997705 1999426 R KEGG: pau:PA14_21340 long-chain-fatty-acid--CoA ligase; long-chain-fatty-acid--CoA ligase complement(1997705..1999426) Shewanella sediminis HAW-EB3 5612134 YP_001473407.1 CDS Ssed_1668 NC_009831.1 1999811 2000617 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1999811..2000617) Shewanella sediminis HAW-EB3 5612135 YP_001473408.1 CDS Ssed_1669 NC_009831.1 2000654 2000953 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein complement(2000654..2000953) Shewanella sediminis HAW-EB3 5612136 YP_001473409.1 CDS Ssed_1670 NC_009831.1 2001014 2001565 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(2001014..2001565) Shewanella sediminis HAW-EB3 5610165 YP_001473410.1 CDS Ssed_1671 NC_009831.1 2001694 2003211 R KEGG: slo:Shew_1009 peptidoglycan-binding domain 1 protein; type II secretory pathway ATPase ExeA complement(2001694..2003211) Shewanella sediminis HAW-EB3 5610166 YP_001473411.1 CDS Ssed_1672 NC_009831.1 2003566 2005641 R KEGG: cps:CPS_4957 hypothetical protein; hypothetical protein complement(2003566..2005641) Shewanella sediminis HAW-EB3 5610167 YP_001473412.1 CDS Ssed_1673 NC_009831.1 2005868 2007787 R KEGG: pfl:PFL_2240 receptor; receptor complement(2005868..2007787) Shewanella sediminis HAW-EB3 5610168 YP_001473413.1 CDS Ssed_1674 NC_009831.1 2008015 2008425 R KEGG: cff:CFF8240_0934 nickel-responsive regulator; nickel-responsive regulator complement(2008015..2008425) Shewanella sediminis HAW-EB3 5611816 YP_001473414.1 CDS Ssed_1675 NC_009831.1 2008622 2010160 D KEGG: vfi:VF0681 oligopeptide-binding protein OppA; oligopeptide-binding protein OppA 2008622..2010160 Shewanella sediminis HAW-EB3 5611817 YP_001473415.1 CDS Ssed_1676 NC_009831.1 2010151 2011143 D KEGG: asa:ASA_1795 ABC-type dipeptide/oligopeptide/nickel transporter, permease component; ABC-type dipeptide/oligopeptide/nickel transporter, permease component 2010151..2011143 Shewanella sediminis HAW-EB3 5611818 YP_001473416.1 CDS Ssed_1677 NC_009831.1 2011140 2011970 D KEGG: vfi:VF0679 oligopeptide transport system permease OppC; oligopeptide transport system permease OppC 2011140..2011970 Shewanella sediminis HAW-EB3 5611819 YP_001473417.1 CDS Ssed_1678 NC_009831.1 2011945 2012673 D KEGG: vfi:VF0678 oligopeptide transport ATP-binding protein OppD; oligopeptide transport ATP-binding protein OppD 2011945..2012673 Shewanella sediminis HAW-EB3 5611082 YP_001473418.1 CDS Ssed_1679 NC_009831.1 2012657 2013247 D KEGG: vfi:VF0677 dipeptide ABC transporter; dipeptide ABC transporter 2012657..2013247 Shewanella sediminis HAW-EB3 5611083 YP_001473419.1 CDS Ssed_1680 NC_009831.1 2013538 2014743 D KEGG: slo:Shew_2259 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2013538..2014743 Shewanella sediminis HAW-EB3 5611084 YP_001473420.1 CDS trpA NC_009831.1 2014834 2015652 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(2014834..2015652) Shewanella sediminis HAW-EB3 5611085 YP_001473421.1 CDS Ssed_1682 NC_009831.1 2015639 2016862 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2015639..2016862) Shewanella sediminis HAW-EB3 5609925 YP_001473422.1 CDS Ssed_1683 NC_009831.1 2017013 2018446 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(2017013..2018446) Shewanella sediminis HAW-EB3 5609926 YP_001473423.1 CDS trpD NC_009831.1 2018449 2019507 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(2018449..2019507) Shewanella sediminis HAW-EB3 5609927 YP_001473424.1 CDS Ssed_1685 NC_009831.1 2019504 2020109 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(2019504..2020109) Shewanella sediminis HAW-EB3 5610069 YP_001473425.1 CDS Ssed_1686 NC_009831.1 2020106 2021665 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(2020106..2021665) Shewanella sediminis HAW-EB3 5610070 YP_001473426.1 CDS Ssed_1687 NC_009831.1 2022218 2023075 D KEGG: slo:Shew_2250 PHP C-terminal domain protein; phosphotransferase domain-containing protein 2022218..2023075 Shewanella sediminis HAW-EB3 5610071 YP_001473427.1 CDS Ssed_1688 NC_009831.1 2023278 2023898 D KEGG: slo:Shew_2249 SUA5/YciO/YrdC/YwlC family protein; SUA5/YciO/YrdC/YwlC family protein 2023278..2023898 Shewanella sediminis HAW-EB3 5610072 YP_001473428.1 CDS Ssed_1689 NC_009831.1 2024010 2024798 D KEGG: slo:Shew_2248 chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 2024010..2024798 Shewanella sediminis HAW-EB3 5610013 YP_001473429.1 CDS Ssed_1690 NC_009831.1 2024799 2025443 D KEGG: slo:Shew_2247 transcriptional regulator; transcriptional regulator 2024799..2025443 Shewanella sediminis HAW-EB3 5610014 YP_001473430.1 CDS Ssed_1691 NC_009831.1 2025436 2026302 D KEGG: slo:Shew_2246 pseudouridine synthase; pseudouridine synthase 2025436..2026302 Shewanella sediminis HAW-EB3 5610015 YP_001473431.1 CDS Ssed_1692 NC_009831.1 2026550 2027287 R KEGG: slo:Shew_2409 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2026550..2027287) Shewanella sediminis HAW-EB3 5610016 YP_001473432.1 CDS Ssed_1693 NC_009831.1 2027549 2030035 D KEGG: slo:Shew_2408 hypothetical protein; hypothetical protein 2027549..2030035 Shewanella sediminis HAW-EB3 5609630 YP_001473433.1 CDS Ssed_1694 NC_009831.1 2030438 2031469 D SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 2030438..2031469 Shewanella sediminis HAW-EB3 5609631 YP_001473434.1 CDS Ssed_1695 NC_009831.1 2031573 2032691 R KEGG: saz:Sama_1484 conserved hypothetical protein; hypothetical protein complement(2031573..2032691) Shewanella sediminis HAW-EB3 5609632 YP_001473435.1 CDS Ssed_1696 NC_009831.1 2032795 2033391 R KEGG: sfr:Sfri_2568 arylesterase; arylesterase complement(2032795..2033391) Shewanella sediminis HAW-EB3 5609872 YP_001473436.1 CDS Ssed_1697 NC_009831.1 2033408 2034160 D KEGG: sdn:Sden_2367 ABC transporter related; ABC transporter 2033408..2034160 Shewanella sediminis HAW-EB3 5609873 YP_001473437.1 CDS Ssed_1698 NC_009831.1 2034160 2036631 D KEGG: shm:Shewmr7_1545 protein of unknown function DUF214; hypothetical protein 2034160..2036631 Shewanella sediminis HAW-EB3 5609874 YP_001473438.1 CDS Ssed_1699 NC_009831.1 2036708 2037631 R KEGG: shn:Shewana3_1542 conserved hypothetical protein; hypothetical protein complement(2036708..2037631) Shewanella sediminis HAW-EB3 5609875 YP_001473439.1 CDS Ssed_1700 NC_009831.1 2037876 2038955 D KEGG: slo:Shew_2398 protein of unknown function UPF0118; hypothetical protein 2037876..2038955 Shewanella sediminis HAW-EB3 5609961 YP_001473440.1 CDS Ssed_1701 NC_009831.1 2038999 2039907 D KEGG: she:Shewmr4_1486 conserved hypothetical protein 95; hypothetical protein 2038999..2039907 Shewanella sediminis HAW-EB3 5609962 YP_001473441.1 CDS Ssed_1702 NC_009831.1 2040060 2040284 R KEGG: slo:Shew_2396 hypothetical protein; hypothetical protein complement(2040060..2040284) Shewanella sediminis HAW-EB3 5609963 YP_001473442.1 CDS Ssed_1703 NC_009831.1 2040858 2041289 R KEGG: slo:Shew_2395 hypothetical protein; hypothetical protein complement(2040858..2041289) Shewanella sediminis HAW-EB3 5609964 YP_001473443.1 CDS Ssed_1704 NC_009831.1 2041698 2043839 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(2041698..2043839) Shewanella sediminis HAW-EB3 5610338 YP_001473444.1 CDS Ssed_1705 NC_009831.1 2043928 2045127 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(2043928..2045127) Shewanella sediminis HAW-EB3 5610339 YP_001473445.1 CDS Ssed_1706 NC_009831.1 2045322 2045765 D KEGG: sbl:Sbal_2673 protein of unknown function DUF412; hypothetical protein 2045322..2045765 Shewanella sediminis HAW-EB3 5610340 YP_001473446.1 CDS pflA NC_009831.1 2045811 2046551 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(2045811..2046551) Shewanella sediminis HAW-EB3 5610341 YP_001473447.1 CDS Ssed_1708 NC_009831.1 2046645 2048927 R KEGG: slo:Shew_2390 formate acetyltransferase; formate C-acetyltransferase complement(2046645..2048927) Shewanella sediminis HAW-EB3 5613712 YP_001473448.1 CDS Ssed_1709 NC_009831.1 2049531 2051063 R KEGG: slo:Shew_2389 hypothetical protein; hypothetical protein complement(2049531..2051063) Shewanella sediminis HAW-EB3 5613713 YP_001473449.1 CDS Ssed_1710 NC_009831.1 2051994 2053469 D KEGG: shw:Sputw3181_1633 formate/nitrite transporter; formate/nitrite transporter 2051994..2053469 Shewanella sediminis HAW-EB3 5613714 YP_001473450.1 CDS Ssed_1711 NC_009831.1 2053538 2053657 R KEGG: shw:Sputw3181_1634 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2053538..2053657) Shewanella sediminis HAW-EB3 5611900 YP_001473451.1 CDS Ssed_1712 NC_009831.1 2053749 2054660 R KEGG: shw:Sputw3181_1634 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2053749..2054660) Shewanella sediminis HAW-EB3 5611901 YP_001473452.1 CDS Ssed_1713 NC_009831.1 2055029 2055220 D hypothetical protein 2055029..2055220 Shewanella sediminis HAW-EB3 5611902 YP_001473453.1 CDS panF NC_009831.1 2055213 2056664 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 2055213..2056664 Shewanella sediminis HAW-EB3 5611903 YP_001473454.1 CDS Ssed_1715 NC_009831.1 2056843 2058384 D KEGG: shm:Shewmr7_1563 C4-dicarboxylate anaerobic carrier; hypothetical protein 2056843..2058384 Shewanella sediminis HAW-EB3 5611591 YP_001473455.1 CDS Ssed_1716 NC_009831.1 2059048 2061729 R KEGG: slo:Shew_2385 TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(2059048..2061729) Shewanella sediminis HAW-EB3 5611592 YP_001473456.1 CDS Ssed_1717 NC_009831.1 2062303 2063271 R KEGG: sbl:Sbal_2665 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(2062303..2063271) Shewanella sediminis HAW-EB3 5611593 YP_001473457.1 CDS Ssed_1718 NC_009831.1 2063388 2064461 R KEGG: sfr:Sfri_2128 O-methyltransferase; O-methyltransferase complement(2063388..2064461) Shewanella sediminis HAW-EB3 5611594 YP_001473458.1 CDS Ssed_1719 NC_009831.1 2064883 2065314 R KEGG: pat:Patl_2171 CBS domain containing membrane protein; hypothetical protein complement(2064883..2065314) Shewanella sediminis HAW-EB3 5610185 YP_001473459.1 CDS Ssed_1720 NC_009831.1 2065598 2066263 D KEGG: slo:Shew_2383 transcriptional regulator, TetR family; TetR family transcriptional regulator 2065598..2066263 Shewanella sediminis HAW-EB3 5610186 YP_001473460.1 CDS Ssed_1721 NC_009831.1 2066659 2067627 R KEGG: slo:Shew_2382 cysteine synthase A; cysteine synthase A complement(2066659..2067627) Shewanella sediminis HAW-EB3 5610187 YP_001473461.1 CDS Ssed_1722 NC_009831.1 2067922 2069133 D KEGG: slo:Shew_2381 RDD domain containing protein; RDD domain-containing protein 2067922..2069133 Shewanella sediminis HAW-EB3 5609635 YP_001473462.1 CDS Ssed_1723 NC_009831.1 2069434 2070696 D KEGG: sfr:Sfri_2466 diguanylate cyclase; diguanylate cyclase 2069434..2070696 Shewanella sediminis HAW-EB3 5609636 YP_001473463.1 CDS Ssed_1724 NC_009831.1 2070700 2071614 R KEGG: hch:HCH_02324 transcriptional regulator; transcriptional regulator complement(2070700..2071614) Shewanella sediminis HAW-EB3 5609637 YP_001473464.1 CDS Ssed_1725 NC_009831.1 2071652 2071921 D hypothetical protein 2071652..2071921 Shewanella sediminis HAW-EB3 5609638 YP_001473465.1 CDS Ssed_1726 NC_009831.1 2071921 2072268 D hypothetical protein 2071921..2072268 Shewanella sediminis HAW-EB3 5610105 YP_001473466.1 CDS Ssed_1727 NC_009831.1 2072782 2073678 D KEGG: pau:PA14_23540 transcriptional activator; transcriptional activator 2072782..2073678 Shewanella sediminis HAW-EB3 5610106 YP_001473467.1 CDS Ssed_1728 NC_009831.1 2073730 2074734 R KEGG: sat:SYN_00385 hypothetical protein; hypothetical protein complement(2073730..2074734) Shewanella sediminis HAW-EB3 5610107 YP_001473468.1 CDS Ssed_1729 NC_009831.1 2075216 2076634 D KEGG: dsy:DSY2839 tetrachloroethene dehalogenase; tetrachloroethene dehalogenase 2075216..2076634 Shewanella sediminis HAW-EB3 5610108 YP_001473469.1 CDS Ssed_1730 NC_009831.1 2076650 2076925 D hypothetical protein 2076650..2076925 Shewanella sediminis HAW-EB3 5609672 YP_001473470.1 CDS Ssed_1731 NC_009831.1 2077026 2077748 D KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family; hypothetical protein 2077026..2077748 Shewanella sediminis HAW-EB3 5609673 YP_001473471.1 CDS Ssed_1732 NC_009831.1 2077861 2080233 R KEGG: sfr:Sfri_2465 hypothetical protein; hypothetical protein complement(2077861..2080233) Shewanella sediminis HAW-EB3 5609674 YP_001473472.1 CDS Ssed_1733 NC_009831.1 2081041 2081436 D KEGG: sfu:Sfum_1481 hypothetical protein; hypothetical protein 2081041..2081436 Shewanella sediminis HAW-EB3 5609675 YP_001473473.1 CDS Ssed_1734 NC_009831.1 2082121 2082894 R role in sulfur assimilation; sulfate transport protein CysZ complement(2082121..2082894) Shewanella sediminis HAW-EB3 5609981 YP_001473474.1 CDS Ssed_1735 NC_009831.1 2083099 2083998 D KEGG: slo:Shew_2379 chromosome segregation protein SMC; chromosome segregation protein SMC 2083099..2083998 Shewanella sediminis HAW-EB3 5609982 YP_001473475.1 CDS Ssed_1736 NC_009831.1 2084070 2086514 D KEGG: slo:Shew_2379 chromosome segregation protein SMC; chromosome segregation protein SMC 2084070..2086514 Shewanella sediminis HAW-EB3 5609983 YP_001473476.1 CDS Ssed_1737 NC_009831.1 2086538 2087563 D KEGG: slo:Shew_2378 cell division protein ZipA; cell division protein ZipA 2086538..2087563 Shewanella sediminis HAW-EB3 5609820 YP_001473477.1 CDS Ssed_1738 NC_009831.1 2087653 2089665 D KEGG: slo:Shew_2377 DNA ligase, NAD-dependent; DNA ligase (NAD(+)) 2087653..2089665 Shewanella sediminis HAW-EB3 5609821 YP_001473478.1 CDS Ssed_1739 NC_009831.1 2089796 2090281 D KEGG: son:SO2863 hypothetical protein; hypothetical protein 2089796..2090281 Shewanella sediminis HAW-EB3 5609822 YP_001473479.1 CDS Ssed_1740 NC_009831.1 2090939 2092144 D KEGG: slo:Shew_2375 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2090939..2092144 Shewanella sediminis HAW-EB3 5609823 YP_001473480.1 CDS Ssed_1741 NC_009831.1 2092221 2093081 D KEGG: slo:Shew_2374 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2092221..2093081 Shewanella sediminis HAW-EB3 5609744 YP_001473481.1 CDS Ssed_1742 NC_009831.1 2093116 2093748 D KEGG: slo:Shew_2373 DsbA oxidoreductase; DsbA oxidoreductase 2093116..2093748 Shewanella sediminis HAW-EB3 5609745 YP_001473482.1 CDS Ssed_1743 NC_009831.1 2094053 2094481 D KEGG: son:SO0652 prophage MuSo1, positive regulator of late transcription; prophage MuSo1, positive regulator of late transcription 2094053..2094481 Shewanella sediminis HAW-EB3 5609746 YP_001473483.1 CDS Ssed_1744 NC_009831.1 2094866 2095000 D KEGG: son:SO0674 prophage MuSo1, protein Gp32; prophage MuSo1, protein Gp32 2094866..2095000 Shewanella sediminis HAW-EB3 5609747 YP_001473484.1 CDS Ssed_1745 NC_009831.1 2095315 2095581 D KEGG: slo:Shew_2372 hypothetical protein; hypothetical protein 2095315..2095581 Shewanella sediminis HAW-EB3 5610148 YP_001473485.1 CDS Ssed_1746 NC_009831.1 2095609 2097327 D KEGG: slo:Shew_2371 Na+/solute symporter; Na+/solute symporter 2095609..2097327 Shewanella sediminis HAW-EB3 5610149 YP_001473486.1 CDS Ssed_1747 NC_009831.1 2097541 2100960 D KEGG: mxa:MXAN_2579 metallophosphoesterase/PKD domain protein; hypothetical protein 2097541..2100960 Shewanella sediminis HAW-EB3 5610150 YP_001473487.1 CDS Ssed_1748 NC_009831.1 2100963 2101790 D hypothetical protein 2100963..2101790 Shewanella sediminis HAW-EB3 5610867 YP_001473488.1 CDS Ssed_1749 NC_009831.1 2101889 2102437 D KEGG: maq:Maqu_0948 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 2101889..2102437 Shewanella sediminis HAW-EB3 5610868 YP_001473489.1 CDS Ssed_1750 NC_009831.1 2102482 2103012 D hypothetical protein 2102482..2103012 Shewanella sediminis HAW-EB3 5610869 YP_001473490.1 CDS Ssed_1751 NC_009831.1 2103179 2105026 D KEGG: slo:Shew_2369 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 2103179..2105026 Shewanella sediminis HAW-EB3 5610870 YP_001473491.1 CDS Ssed_1752 NC_009831.1 2105027 2105713 D KEGG: slo:Shew_2368 exonuclease, RNase T and DNA polymerase III; exonuclease 2105027..2105713 Shewanella sediminis HAW-EB3 5610765 YP_001473492.1 CDS Ssed_1753 NC_009831.1 2105705 2107456 R KEGG: vfi:VFA0072 sensor protein LuxQ; sensor protein LuxQ complement(2105705..2107456) Shewanella sediminis HAW-EB3 5610766 YP_001473493.1 CDS Ssed_1754 NC_009831.1 2107524 2108057 R KEGG: vfi:VFA0071 hypothetical protein; hypothetical protein complement(2107524..2108057) Shewanella sediminis HAW-EB3 5610767 YP_001473494.1 CDS Ssed_1755 NC_009831.1 2108253 2108831 D KEGG: she:Shewmr4_1519 hypothetical protein; hypothetical protein 2108253..2108831 Shewanella sediminis HAW-EB3 5610768 YP_001473495.1 CDS pntA NC_009831.1 2109325 2110869 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 2109325..2110869 Shewanella sediminis HAW-EB3 5610647 YP_001473496.1 CDS Ssed_1757 NC_009831.1 2110884 2112284 D KEGG: son:SO3741 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 2110884..2112284 Shewanella sediminis HAW-EB3 5610648 YP_001473497.1 CDS Ssed_1758 NC_009831.1 2112880 2113944 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(2112880..2113944) Shewanella sediminis HAW-EB3 5610649 YP_001473498.1 CDS Ssed_1759 NC_009831.1 2114040 2114711 R KEGG: slo:Shew_2365 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2114040..2114711) Shewanella sediminis HAW-EB3 5610650 YP_001473499.1 CDS Ssed_1760 NC_009831.1 2114840 2116405 R KEGG: slo:Shew_2364 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2114840..2116405) Shewanella sediminis HAW-EB3 5610651 YP_001473500.1 CDS Ssed_1761 NC_009831.1 2116462 2117463 R KEGG: slo:Shew_2363 proline racemase; hydroxyproline-2-epimerase complement(2116462..2117463) Shewanella sediminis HAW-EB3 5610652 YP_001473501.1 CDS Ssed_1762 NC_009831.1 2117629 2118543 R KEGG: slo:Shew_2362 dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(2117629..2118543) Shewanella sediminis HAW-EB3 5610653 YP_001473502.1 CDS Ssed_1763 NC_009831.1 2118735 2119775 D KEGG: slo:Shew_2361 proline racemase; proline racemase 2118735..2119775 Shewanella sediminis HAW-EB3 5612751 YP_001473503.1 CDS Ssed_1764 NC_009831.1 2119955 2121223 D KEGG: slo:Shew_2360 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 2119955..2121223 Shewanella sediminis HAW-EB3 5612752 YP_001473504.1 CDS Ssed_1765 NC_009831.1 2121662 2122435 D KEGG: sdn:Sden_0896 methyltransferase type 11; type 11 methyltransferase 2121662..2122435 Shewanella sediminis HAW-EB3 5612753 YP_001473505.1 CDS Ssed_1766 NC_009831.1 2122993 2123328 D hypothetical protein 2122993..2123328 Shewanella sediminis HAW-EB3 5612754 YP_001473506.1 CDS Ssed_1767 NC_009831.1 2123590 2124633 R KEGG: bvi:Bcep1808_6281 hypothetical protein; hypothetical protein complement(2123590..2124633) Shewanella sediminis HAW-EB3 5613414 YP_001473507.1 CDS Ssed_1768 NC_009831.1 2124946 2125896 D KEGG: sat:SYN_00385 hypothetical protein; meta-pathway phenol degradation-like protein 2124946..2125896 Shewanella sediminis HAW-EB3 5613415 YP_001473508.1 CDS Ssed_1769 NC_009831.1 2126621 2126836 D KEGG: xcb:XC_0338 hypothetical protein; hypothetical protein 2126621..2126836 Shewanella sediminis HAW-EB3 5613416 YP_001473509.1 CDS Ssed_1770 NC_009831.1 2126997 2128337 R KEGG: ppd:Ppro_2575 guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine polyphosphate pyrophosphohydrolase/synthetase complement(2126997..2128337) Shewanella sediminis HAW-EB3 5613417 YP_001473510.1 CDS Ssed_1771 NC_009831.1 2128641 2130188 R KEGG: shm:Shewmr7_1436 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(2128641..2130188) Shewanella sediminis HAW-EB3 5612229 YP_001473511.1 CDS Ssed_1772 NC_009831.1 2130572 2131054 R KEGG: shw:Sputw3181_2859 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2130572..2131054) Shewanella sediminis HAW-EB3 5612230 YP_001473512.1 CDS Ssed_1773 NC_009831.1 2131299 2132516 R KEGG: pin:Ping_2076 transporter, BCCT family protein; transporter, BCCT family protein complement(2131299..2132516) Shewanella sediminis HAW-EB3 5612231 YP_001473513.1 CDS Ssed_1774 NC_009831.1 2133324 2135177 D KEGG: ppr:PBPRB1741 hypothetical carnitine O-acyltransferase; carnitine O-acetyltransferase 2133324..2135177 Shewanella sediminis HAW-EB3 5610697 YP_001473514.1 CDS Ssed_1775 NC_009831.1 2135442 2135801 D KEGG: cps:CPS_3947 hypothetical protein; hypothetical protein 2135442..2135801 Shewanella sediminis HAW-EB3 5610698 YP_001473515.1 CDS Ssed_1776 NC_009831.1 2135947 2136798 R KEGG: sit:TM1040_3283 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2135947..2136798) Shewanella sediminis HAW-EB3 5610699 YP_001473516.1 CDS Ssed_1777 NC_009831.1 2136931 2137905 D KEGG: sfr:Sfri_3680 alpha/beta hydrolase fold; alpha/beta hydrolase 2136931..2137905 Shewanella sediminis HAW-EB3 5610700 YP_001473517.1 CDS Ssed_1778 NC_009831.1 2137935 2138543 D KEGG: cps:CPS_2520 short chain dehydrogenase; short chain dehydrogenase 2137935..2138543 Shewanella sediminis HAW-EB3 5610811 YP_001473518.1 CDS Ssed_1779 NC_009831.1 2138615 2139853 R KEGG: lpf:lpl0333 hypothetical protein; hypothetical protein complement(2138615..2139853) Shewanella sediminis HAW-EB3 5610812 YP_001473519.1 CDS Ssed_1780 NC_009831.1 2140151 2141728 D KEGG: sfr:Sfri_2755 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 2140151..2141728 Shewanella sediminis HAW-EB3 5610813 YP_001473520.1 CDS Ssed_1781 NC_009831.1 2141738 2143102 D KEGG: saz:Sama_2082 signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein; signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein 2141738..2143102 Shewanella sediminis HAW-EB3 5610814 YP_001473521.1 CDS Ssed_1782 NC_009831.1 2143107 2144492 R KEGG: slo:Shew_2358 peptidase M24; peptidase M24 complement(2143107..2144492) Shewanella sediminis HAW-EB3 5610662 YP_001473522.1 CDS Ssed_1783 NC_009831.1 2144719 2145270 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2144719..2145270 Shewanella sediminis HAW-EB3 5610663 YP_001473523.1 CDS Ssed_1784 NC_009831.1 2152549 2153244 R KEGG: slo:Shew_2355 hypothetical protein; hypothetical protein complement(2152549..2153244) Shewanella sediminis HAW-EB3 5611775 YP_001473524.1 CDS Ssed_1785 NC_009831.1 2153542 2153877 D KEGG: slo:Shew_2354 hypothetical protein; hypothetical protein 2153542..2153877 Shewanella sediminis HAW-EB3 5610665 YP_001473525.1 CDS Ssed_1786 NC_009831.1 2154002 2154949 D KEGG: sbl:Sbal_2505 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2154002..2154949 Shewanella sediminis HAW-EB3 5613288 YP_001473526.1 CDS Ssed_1787 NC_009831.1 2154944 2155258 R KEGG: slo:Shew_2352 hypothetical protein; hypothetical protein complement(2154944..2155258) Shewanella sediminis HAW-EB3 5613289 YP_001473527.1 CDS Ssed_1788 NC_009831.1 2155417 2156682 R KEGG: slo:Shew_2351 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2155417..2156682) Shewanella sediminis HAW-EB3 5613290 YP_001473528.1 CDS Ssed_1789 NC_009831.1 2156838 2157545 D KEGG: saz:Sama_1540 conserved hypothetical protein; hypothetical protein 2156838..2157545 Shewanella sediminis HAW-EB3 5613044 YP_001473529.1 CDS Ssed_1790 NC_009831.1 2157640 2158995 R KEGG: slo:Shew_2349 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2157640..2158995) Shewanella sediminis HAW-EB3 5613045 YP_001473530.1 CDS Ssed_1791 NC_009831.1 2159056 2159730 R KEGG: slo:Shew_2348 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2159056..2159730) Shewanella sediminis HAW-EB3 5613046 YP_001473531.1 CDS Ssed_1792 NC_009831.1 2160005 2160859 D KEGG: sfr:Sfri_2485 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2160005..2160859 Shewanella sediminis HAW-EB3 5613047 YP_001473532.1 CDS Ssed_1793 NC_009831.1 2160876 2161571 D KEGG: cps:CPS_3310 phosphonate ABC transporter, ATP-binding protein; phosphonate ABC transporter ATPase 2160876..2161571 Shewanella sediminis HAW-EB3 5612837 YP_001473533.1 CDS Ssed_1794 NC_009831.1 2161564 2163096 D KEGG: slo:Shew_2345 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2161564..2163096 Shewanella sediminis HAW-EB3 5612838 YP_001473534.1 CDS Ssed_1795 NC_009831.1 2163300 2163644 R KEGG: slo:Shew_2344 hypothetical protein; hypothetical protein complement(2163300..2163644) Shewanella sediminis HAW-EB3 5612839 YP_001473535.1 CDS Ssed_1796 NC_009831.1 2163726 2164553 R KEGG: slo:Shew_2343 hypothetical protein; hypothetical protein complement(2163726..2164553) Shewanella sediminis HAW-EB3 5612840 YP_001473536.1 CDS Ssed_1797 NC_009831.1 2164932 2166524 D KEGG: slo:Shew_2342 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2164932..2166524 Shewanella sediminis HAW-EB3 5613226 YP_001473537.1 CDS Ssed_1798 NC_009831.1 2166521 2167873 D KEGG: slo:Shew_2341 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 2166521..2167873 Shewanella sediminis HAW-EB3 5613227 YP_001473538.1 CDS Ssed_1799 NC_009831.1 2168088 2169320 D KEGG: pha:PSHAa2265 metal-dependent phosphohydrolase domain; metal dependent phosphohydrolase domain-containing protein 2168088..2169320 Shewanella sediminis HAW-EB3 5613228 YP_001473539.1 CDS Ssed_1800 NC_009831.1 2169366 2170004 R KEGG: son:SO0765 threonine efflux protein; threonine efflux protein complement(2169366..2170004) Shewanella sediminis HAW-EB3 5612780 YP_001473540.1 CDS Ssed_1801 NC_009831.1 2170111 2170947 R KEGG: slo:Shew_1463 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2170111..2170947) Shewanella sediminis HAW-EB3 5612781 YP_001473541.1 CDS nadE NC_009831.1 2171109 2171939 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2171109..2171939 Shewanella sediminis HAW-EB3 5612782 YP_001473542.1 CDS Ssed_1803 NC_009831.1 2171985 2172464 R KEGG: spc:Sputcn32_2293 hypothetical protein; hypothetical protein complement(2171985..2172464) Shewanella sediminis HAW-EB3 5612783 YP_001473543.1 CDS Ssed_1804 NC_009831.1 2172578 2174047 D KEGG: slo:Shew_1466 hypothetical protein; hypothetical protein 2172578..2174047 Shewanella sediminis HAW-EB3 5612714 YP_001473544.1 CDS Ssed_1805 NC_009831.1 2174053 2176230 R KEGG: slo:Shew_1467 diguanylate cyclase; diguanylate cyclase complement(2174053..2176230) Shewanella sediminis HAW-EB3 5612715 YP_001473545.1 CDS Ssed_1806 NC_009831.1 2176512 2177087 R Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P complement(2176512..2177087) Shewanella sediminis HAW-EB3 5612716 YP_001473546.1 CDS Ssed_1807 NC_009831.1 2177214 2178809 R KEGG: vpa:VPA0467 ATP-binding component of ABC transporter; ABC transporter ATP-binding protein complement(2177214..2178809) Shewanella sediminis HAW-EB3 5612717 YP_001473547.1 CDS Ssed_1808 NC_009831.1 2179647 2181431 R KEGG: she:Shewmr4_2219 sulfatase; sulfatase complement(2179647..2181431) Shewanella sediminis HAW-EB3 5611858 YP_001473548.1 CDS Ssed_1809 NC_009831.1 2181518 2181733 R KEGG: slo:Shew_1471 protein of unknown function DUF1414; hypothetical protein complement(2181518..2181733) Shewanella sediminis HAW-EB3 5612563 YP_001473549.1 CDS Ssed_1810 NC_009831.1 2182101 2183132 D KEGG: slo:Shew_1472 37 kDa nucleoid-associated protein; nucleoid-associated protein NdpA 2182101..2183132 Shewanella sediminis HAW-EB3 5612564 YP_001473550.1 CDS Ssed_1811 NC_009831.1 2183497 2184378 D KEGG: slo:Shew_1473 hypothetical protein; hypothetical protein 2183497..2184378 Shewanella sediminis HAW-EB3 5612565 YP_001473551.1 CDS Ssed_1812 NC_009831.1 2184417 2185265 D KEGG: slo:Shew_1474 peptidase M23B; peptidase M23B 2184417..2185265 Shewanella sediminis HAW-EB3 5612520 YP_001473552.1 CDS Ssed_1813 NC_009831.1 2185390 2186199 R KEGG: dar:Daro_1186 phytochelatin synthase-like protein; phytochelatin synthase-like protein complement(2185390..2186199) Shewanella sediminis HAW-EB3 5612521 YP_001473553.1 CDS Ssed_1814 NC_009831.1 2186356 2188437 D KEGG: ppr:PBPRB1222 ferrichrome-iron receptor; ferrichrome-iron receptor 2186356..2188437 Shewanella sediminis HAW-EB3 5612522 YP_001473554.1 CDS Ssed_1815 NC_009831.1 2190542 2190952 D KEGG: bce:BC3238 hypothetical protein; hypothetical protein 2190542..2190952 Shewanella sediminis HAW-EB3 5612478 YP_001473555.1 CDS Ssed_1816 NC_009831.1 2191396 2192310 R KEGG: pvi:Cvib_1365 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2191396..2192310) Shewanella sediminis HAW-EB3 5612479 YP_001473556.1 CDS Ssed_1817 NC_009831.1 2192297 2193751 R KEGG: pvi:Cvib_1366 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter complement(2192297..2193751) Shewanella sediminis HAW-EB3 5612480 YP_001473557.1 CDS Ssed_1818 NC_009831.1 2193754 2194947 R KEGG: rfr:Rfer_3891 protein of unknown function DUF160; lysine 2,3-aminomutase complement(2193754..2194947) Shewanella sediminis HAW-EB3 5612481 YP_001473558.1 CDS Ssed_1819 NC_009831.1 2195595 2196167 R KEGG: slo:Shew_1489 protein of unknown function DUF991; hypothetical protein complement(2195595..2196167) Shewanella sediminis HAW-EB3 5612538 YP_001473559.1 CDS Ssed_1820 NC_009831.1 2196220 2196759 R KEGG: slo:Shew_1490 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(2196220..2196759) Shewanella sediminis HAW-EB3 5612539 YP_001473560.1 CDS Ssed_1821 NC_009831.1 2196931 2197770 D KEGG: she:Shewmr4_2209 ion transport protein; ion transport protein 2196931..2197770 Shewanella sediminis HAW-EB3 5612540 YP_001473561.1 CDS Ssed_1822 NC_009831.1 2198117 2199634 D KEGG: slo:Shew_1492 MATE efflux family protein; MATE efflux family protein 2198117..2199634 Shewanella sediminis HAW-EB3 5612541 YP_001473562.1 CDS Ssed_1823 NC_009831.1 2199717 2199953 R KEGG: slo:Shew_1493 hypothetical protein; hypothetical protein complement(2199717..2199953) Shewanella sediminis HAW-EB3 5612472 YP_001473563.1 CDS Ssed_1824 NC_009831.1 2200129 2200446 D KEGG: shw:Sputw3181_1730 uncharacterized conserved protein UCP029143; hypothetical protein 2200129..2200446 Shewanella sediminis HAW-EB3 5612473 YP_001473564.1 CDS Ssed_1825 NC_009831.1 2200789 2201244 R KEGG: slo:Shew_1496 lipoprotein; lipoprotein complement(2200789..2201244) Shewanella sediminis HAW-EB3 5612474 YP_001473565.1 CDS Ssed_1826 NC_009831.1 2201603 2202337 D KEGG: slo:Shew_1497 protein of unknown function DUF1538; hypothetical protein 2201603..2202337 Shewanella sediminis HAW-EB3 5612399 YP_001473566.1 CDS Ssed_1827 NC_009831.1 2202343 2203128 D KEGG: slo:Shew_1498 protein of unknown function DUF1538; hypothetical protein 2202343..2203128 Shewanella sediminis HAW-EB3 5612400 YP_001473567.1 CDS Ssed_1828 NC_009831.1 2203118 2203468 D KEGG: slo:Shew_1499 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2203118..2203468 Shewanella sediminis HAW-EB3 5612401 YP_001473568.1 CDS Ssed_1829 NC_009831.1 2203465 2203872 D KEGG: slo:Shew_1500 signal transduction protein with CBS domains; signal transduction protein 2203465..2203872 Shewanella sediminis HAW-EB3 5612402 YP_001473569.1 CDS Ssed_1830 NC_009831.1 2203936 2204292 R KEGG: shm:Shewmr7_2487 glutaredoxin; glutaredoxin complement(2203936..2204292) Shewanella sediminis HAW-EB3 5612367 YP_001473570.1 CDS Ssed_1831 NC_009831.1 2204358 2207399 R KEGG: slo:Shew_1502 protein of unknown function DUF748; hypothetical protein complement(2204358..2207399) Shewanella sediminis HAW-EB3 5612368 YP_001473571.1 CDS Ssed_1832 NC_009831.1 2207554 2208573 D KEGG: slo:Shew_1503 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 2207554..2208573 Shewanella sediminis HAW-EB3 5612369 YP_001473572.1 CDS Ssed_1833 NC_009831.1 2208574 2208981 R KEGG: sbl:Sbal_1690 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2208574..2208981) Shewanella sediminis HAW-EB3 5612370 YP_001473573.1 CDS Ssed_1834 NC_009831.1 2209195 2209590 D KEGG: slo:Shew_1504 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2209195..2209590 Shewanella sediminis HAW-EB3 5612273 YP_001473574.1 CDS Ssed_1835 NC_009831.1 2209616 2210356 D KEGG: slo:Shew_1505 hypothetical protein; hypothetical protein 2209616..2210356 Shewanella sediminis HAW-EB3 5612274 YP_001473575.1 CDS Ssed_1836 NC_009831.1 2210450 2210800 D KEGG: slo:Shew_1506 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2210450..2210800 Shewanella sediminis HAW-EB3 5612275 YP_001473576.1 CDS Ssed_1837 NC_009831.1 2210860 2211213 D KEGG: slo:Shew_1507 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 2210860..2211213 Shewanella sediminis HAW-EB3 5612276 YP_001473577.1 CDS asnB NC_009831.1 2211309 2212970 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(2211309..2212970) Shewanella sediminis HAW-EB3 5612360 YP_001473578.1 CDS Ssed_1839 NC_009831.1 2213460 2215169 R KEGG: slo:Shew_1510 peptidase M28; peptidase M28 complement(2213460..2215169) Shewanella sediminis HAW-EB3 5612361 YP_001473579.1 CDS Ssed_1840 NC_009831.1 2215839 2216585 R KEGG: slo:Shew_1511 HAD-superfamily hydrolase, subfamily IIA; UMP phosphatase complement(2215839..2216585) Shewanella sediminis HAW-EB3 5612362 YP_001473580.1 CDS Ssed_1841 NC_009831.1 2216927 2218267 R KEGG: ppr:PBPRB1966 hypothetical protein; hypothetical protein complement(2216927..2218267) Shewanella sediminis HAW-EB3 5612027 YP_001473581.1 CDS Ssed_1842 NC_009831.1 2218586 2219959 R KEGG: ppr:PBPRB1966 hypothetical protein; hypothetical protein complement(2218586..2219959) Shewanella sediminis HAW-EB3 5612028 YP_001473582.1 CDS Ssed_1843 NC_009831.1 2220217 2220621 R hypothetical protein complement(2220217..2220621) Shewanella sediminis HAW-EB3 5612029 YP_001473583.1 CDS purN NC_009831.1 2220845 2221489 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(2220845..2221489) Shewanella sediminis HAW-EB3 5612030 YP_001473584.1 CDS Ssed_1845 NC_009831.1 2221489 2222526 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2221489..2222526) Shewanella sediminis HAW-EB3 5611989 YP_001473585.1 CDS Ssed_1846 NC_009831.1 2222749 2223375 D KEGG: shn:Shewana3_2544 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 2222749..2223375 Shewanella sediminis HAW-EB3 5611990 YP_001473586.1 CDS Ssed_1847 NC_009831.1 2223502 2224821 R KEGG: slo:Shew_1515 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(2223502..2224821) Shewanella sediminis HAW-EB3 5611991 YP_001473587.1 CDS Ssed_1848 NC_009831.1 2225132 2225737 D KEGG: slo:Shew_1516 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 2225132..2225737 Shewanella sediminis HAW-EB3 5611992 YP_001473588.1 CDS Ssed_1849 NC_009831.1 2225953 2226474 D KEGG: pin:Ping_2839 YbaK/prolyl-tRNA synthetase associated region; prolyl-tRNA synthetase 2225953..2226474 Shewanella sediminis HAW-EB3 5611867 YP_001473589.1 CDS Ssed_1850 NC_009831.1 2226589 2227260 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(2226589..2227260) Shewanella sediminis HAW-EB3 5611868 YP_001473590.1 CDS Ssed_1851 NC_009831.1 2227378 2228271 D KEGG: slo:Shew_1521 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2227378..2228271 Shewanella sediminis HAW-EB3 5611869 YP_001473591.1 CDS Ssed_1852 NC_009831.1 2228909 2231065 D KEGG: slo:Shew_1522 prolyl oligopeptidase; prolyl oligopeptidase 2228909..2231065 Shewanella sediminis HAW-EB3 5611922 YP_001473592.1 CDS Ssed_1853 NC_009831.1 2231231 2231629 D KEGG: sbl:Sbal_1742 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 2231231..2231629 Shewanella sediminis HAW-EB3 5611923 YP_001473593.1 CDS Ssed_1854 NC_009831.1 2231619 2232308 D KEGG: slo:Shew_1524 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2231619..2232308 Shewanella sediminis HAW-EB3 5611924 YP_001473594.1 CDS Ssed_1855 NC_009831.1 2232308 2232742 D KEGG: slo:Shew_1525 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2232308..2232742 Shewanella sediminis HAW-EB3 5611925 YP_001473595.1 CDS Ssed_1856 NC_009831.1 2232746 2233705 D KEGG: slo:Shew_1526 TolA family protein; TolA family protein 2232746..2233705 Shewanella sediminis HAW-EB3 5611712 YP_001473596.1 CDS tolB NC_009831.1 2233716 2235044 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2233716..2235044 Shewanella sediminis HAW-EB3 5611713 YP_001473597.1 CDS Ssed_1858 NC_009831.1 2235078 2235617 D KEGG: slo:Shew_1528 OmpA domain protein; OmpA domain-containing protein 2235078..2235617 Shewanella sediminis HAW-EB3 5611714 YP_001473598.1 CDS Ssed_1859 NC_009831.1 2235638 2236366 D KEGG: slo:Shew_1529 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2235638..2236366 Shewanella sediminis HAW-EB3 5611715 YP_001473599.1 CDS Ssed_1860 NC_009831.1 2239082 2240224 D KEGG: slo:Shew_1530 porin; porin 2239082..2240224 Shewanella sediminis HAW-EB3 5612110 YP_001473600.1 CDS grxA NC_009831.1 2240334 2240603 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(2240334..2240603) Shewanella sediminis HAW-EB3 5611668 YP_001473601.1 CDS Ssed_1862 NC_009831.1 2240666 2242408 R KEGG: shn:Shewana3_2524 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit complement(2240666..2242408) Shewanella sediminis HAW-EB3 5611669 YP_001473602.1 CDS Ssed_1863 NC_009831.1 2242605 2244557 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(2242605..2244557) Shewanella sediminis HAW-EB3 5611670 YP_001473603.1 CDS Ssed_1864 NC_009831.1 2244679 2248158 D KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 2244679..2248158 Shewanella sediminis HAW-EB3 5611611 YP_001473604.1 CDS Ssed_1865 NC_009831.1 2248171 2248782 D KEGG: slo:Shew_1535 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2248171..2248782 Shewanella sediminis HAW-EB3 5611612 YP_001473605.1 CDS Ssed_1866 NC_009831.1 2249079 2250368 D KEGG: slo:Shew_1537 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2249079..2250368 Shewanella sediminis HAW-EB3 5611613 YP_001473606.1 CDS Ssed_1867 NC_009831.1 2250576 2251235 R KEGG: slo:Shew_1545 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(2250576..2251235) Shewanella sediminis HAW-EB3 5611638 YP_001473607.1 CDS Ssed_1868 NC_009831.1 2251458 2251883 R KEGG: slo:Shew_1546 thioesterase superfamily protein; thioesterase superfamily protein complement(2251458..2251883) Shewanella sediminis HAW-EB3 5611639 YP_001473608.1 CDS Ssed_1869 NC_009831.1 2252145 2253209 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2252145..2253209) Shewanella sediminis HAW-EB3 5611640 YP_001473609.1 CDS Ssed_1870 NC_009831.1 2253375 2254187 R KEGG: slo:Shew_1548 protein of unknown function DUF299; hypothetical protein complement(2253375..2254187) Shewanella sediminis HAW-EB3 5611641 YP_001473610.1 CDS Ssed_1871 NC_009831.1 2254314 2256686 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2254314..2256686 Shewanella sediminis HAW-EB3 5609725 YP_001473611.1 CDS Ssed_1872 NC_009831.1 2257426 2260485 D KEGG: slo:Shew_1550 FAD linked oxidase domain protein; D-lactate dehydrogenase 2257426..2260485 Shewanella sediminis HAW-EB3 5609726 YP_001473612.1 CDS Ssed_1873 NC_009831.1 2260568 2261008 D KEGG: spc:Sputcn32_2241 protein of unknown function DUF1285; hypothetical protein 2260568..2261008 Shewanella sediminis HAW-EB3 5609727 YP_001473613.1 CDS Ssed_1874 NC_009831.1 2261121 2261540 D KEGG: shm:Shewmr7_1670 transcriptional regulator, MarR family; MarR family transcriptional regulator 2261121..2261540 Shewanella sediminis HAW-EB3 5609728 YP_001473614.1 CDS Ssed_1875 NC_009831.1 2261611 2262015 D KEGG: slo:Shew_1553 hypothetical protein; hypothetical protein 2261611..2262015 Shewanella sediminis HAW-EB3 5610906 YP_001473615.1 CDS Ssed_1876 NC_009831.1 2262036 2262380 R KEGG: slo:Shew_1554 hypothetical protein; hypothetical protein complement(2262036..2262380) Shewanella sediminis HAW-EB3 5610907 YP_001473616.1 CDS Ssed_1877 NC_009831.1 2262584 2263618 R KEGG: slo:Shew_1555 Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase complement(2262584..2263618) Shewanella sediminis HAW-EB3 5610908 YP_001473617.1 CDS Ssed_1878 NC_009831.1 2263878 2264321 D KEGG: slo:Shew_1556 hypothetical protein; hypothetical protein 2263878..2264321 Shewanella sediminis HAW-EB3 5610776 YP_001473618.1 CDS Ssed_1879 NC_009831.1 2264540 2265907 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2264540..2265907) Shewanella sediminis HAW-EB3 5610777 YP_001473619.1 CDS Ssed_1880 NC_009831.1 2265936 2266550 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2265936..2266550) Shewanella sediminis HAW-EB3 5610778 YP_001473620.1 CDS mnmA NC_009831.1 2266554 2267672 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2266554..2267672) Shewanella sediminis HAW-EB3 5610779 YP_001473621.1 CDS Ssed_1882 NC_009831.1 2267919 2268629 R KEGG: she:Shewmr4_1605 pseudouridine synthase, Rsu; pseudouridine synthase complement(2267919..2268629) Shewanella sediminis HAW-EB3 5613400 YP_001473622.1 CDS Ssed_1883 NC_009831.1 2269013 2271238 D KEGG: shm:Shewmr7_1681 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase (NADP(+)) 2269013..2271238 Shewanella sediminis HAW-EB3 5613401 YP_001473623.1 CDS Ssed_1884 NC_009831.1 2271354 2271560 R KEGG: slo:Shew_1564 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(2271354..2271560) Shewanella sediminis HAW-EB3 5613402 YP_001473624.1 CDS clpS NC_009831.1 2271808 2272116 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2271808..2272116 Shewanella sediminis HAW-EB3 5613403 YP_001473625.1 CDS Ssed_1886 NC_009831.1 2272153 2274411 D KEGG: slo:Shew_1566 ATP-dependent Clp protease, ATP-binding subunit ClpA; ATP-dependent Clp protease, ATP-binding subunit ClpA 2272153..2274411 Shewanella sediminis HAW-EB3 5610986 YP_001473626.1 CDS infA NC_009831.1 2274522 2274740 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2274522..2274740) Shewanella sediminis HAW-EB3 5610987 YP_001473627.1 CDS Ssed_1888 NC_009831.1 2274880 2275590 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2274880..2275590) Shewanella sediminis HAW-EB3 5610988 YP_001473628.1 CDS aat NC_009831.1 2275580 2276290 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2275580..2276290) Shewanella sediminis HAW-EB3 5610989 YP_001473629.1 CDS Ssed_1890 NC_009831.1 2276346 2276822 D KEGG: she:Shewmr4_1652 17 kDa surface antigen; 17 kDa surface antigen 2276346..2276822 Shewanella sediminis HAW-EB3 5611075 YP_001473630.1 CDS Ssed_1891 NC_009831.1 2276917 2277276 R KEGG: slo:Shew_1571 hypothetical protein; hypothetical protein complement(2276917..2277276) Shewanella sediminis HAW-EB3 5611076 YP_001473631.1 CDS Ssed_1892 NC_009831.1 2277854 2278606 D KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 2277854..2278606 Shewanella sediminis HAW-EB3 5611077 YP_001473632.1 CDS Ssed_1893 NC_009831.1 2278750 2279526 R KEGG: eba:ebA3750 transcriptional regulator; transcriptional regulator complement(2278750..2279526) Shewanella sediminis HAW-EB3 5613835 YP_001473633.1 CDS Ssed_1894 NC_009831.1 2279633 2280844 D KEGG: pha:PSHAa2409 permease; permease 2279633..2280844 Shewanella sediminis HAW-EB3 5613836 YP_001473634.1 CDS Ssed_1895 NC_009831.1 2281126 2281893 D KEGG: slo:Shew_2702 hypothetical protein; hypothetical protein 2281126..2281893 Shewanella sediminis HAW-EB3 5613837 YP_001473635.1 CDS Ssed_1896 NC_009831.1 2281988 2282200 R KEGG: pin:Ping_1936 hypothetical protein; hypothetical protein complement(2281988..2282200) Shewanella sediminis HAW-EB3 5613838 YP_001473636.1 CDS Ssed_1897 NC_009831.1 2282402 2282569 R KEGG: slo:Shew_1754 hypothetical protein; hypothetical protein complement(2282402..2282569) Shewanella sediminis HAW-EB3 5611128 YP_001473637.1 CDS Ssed_1898 NC_009831.1 2282656 2283003 R KEGG: shw:Sputw3181_2177 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA complement(2282656..2283003) Shewanella sediminis HAW-EB3 5611129 YP_001473638.1 CDS Ssed_1899 NC_009831.1 2283006 2284022 R KEGG: slo:Shew_1756 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2283006..2284022) Shewanella sediminis HAW-EB3 5611130 YP_001473639.1 CDS Ssed_1900 NC_009831.1 2284025 2285140 R KEGG: sbl:Sbal_1881 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2284025..2285140) Shewanella sediminis HAW-EB3 5611131 YP_001473640.1 CDS Ssed_1901 NC_009831.1 2285145 2285384 R KEGG: slo:Shew_1758 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(2285145..2285384) Shewanella sediminis HAW-EB3 5610824 YP_001473641.1 CDS Ssed_1902 NC_009831.1 2285387 2286145 R KEGG: shw:Sputw3181_2173 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2285387..2286145) Shewanella sediminis HAW-EB3 5610825 YP_001473642.1 CDS Ssed_1903 NC_009831.1 2286248 2288599 R KEGG: slo:Shew_1760 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2286248..2288599) Shewanella sediminis HAW-EB3 5610826 YP_001473643.1 CDS Ssed_1904 NC_009831.1 2288603 2290330 R KEGG: slo:Shew_1761 hypothetical protein; hypothetical protein complement(2288603..2290330) Shewanella sediminis HAW-EB3 5610800 YP_001473644.1 CDS Ssed_1905 NC_009831.1 2290317 2290874 R KEGG: slo:Shew_1762 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(2290317..2290874) Shewanella sediminis HAW-EB3 5610801 YP_001473645.1 CDS Ssed_1906 NC_009831.1 2291055 2291720 R KEGG: shw:Sputw3181_1922 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2291055..2291720) Shewanella sediminis HAW-EB3 5610802 YP_001473646.1 CDS Ssed_1907 NC_009831.1 2291743 2293446 R KEGG: slo:Shew_1764 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit complement(2291743..2293446) Shewanella sediminis HAW-EB3 5610803 YP_001473647.1 CDS Ssed_1908 NC_009831.1 2293450 2294586 R KEGG: shm:Shewmr7_2155 hydrogenase (NiFe) small subunit HydA; hydrogen:quinone oxidoreductase complement(2293450..2294586) Shewanella sediminis HAW-EB3 5611156 YP_001473648.1 CDS Ssed_1909 NC_009831.1 2295037 2295453 D KEGG: shm:Shewmr7_2139 signal transduction protein with CBS domains; signal transduction protein 2295037..2295453 Shewanella sediminis HAW-EB3 5611157 YP_001473649.1 CDS Ssed_1910 NC_009831.1 2295871 2296641 D KEGG: hch:HCH_06608 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein 2295871..2296641 Shewanella sediminis HAW-EB3 5611158 YP_001473650.1 CDS Ssed_1911 NC_009831.1 2297022 2300897 D KEGG: slo:Shew_1767 ATP-dependent helicase HrpA; ATP-dependent helicase HrpA 2297022..2300897 Shewanella sediminis HAW-EB3 5611159 YP_001473651.1 CDS Ssed_1912 NC_009831.1 2301545 2301850 D KEGG: vvy:VVA1191 NapD protein; NapD protein 2301545..2301850 Shewanella sediminis HAW-EB3 5611067 YP_001473652.1 CDS Ssed_1913 NC_009831.1 2301847 2304336 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2301847..2304336 Shewanella sediminis HAW-EB3 5611068 YP_001473653.1 CDS Ssed_1914 NC_009831.1 2304349 2304801 D KEGG: vco:VC0395_0618 periplasmic nitrate reductase, cytochrome c-type protein; periplasmic nitrate reductase, cytochrome c-type protein 2304349..2304801 Shewanella sediminis HAW-EB3 5611069 YP_001473654.1 CDS Ssed_1915 NC_009831.1 2304822 2305412 D KEGG: vvy:VVA1194 periplasmic nitrate reductase, cytochrome c-type protein; periplasmic nitrate reductase, cytochrome c-type protein 2304822..2305412 Shewanella sediminis HAW-EB3 5611070 YP_001473655.1 CDS Ssed_1916 NC_009831.1 2305422 2305550 D KEGG: vvy:VVA1195 hypothetical protein; hypothetical protein 2305422..2305550 Shewanella sediminis HAW-EB3 5610678 YP_001473656.1 CDS Ssed_1917 NC_009831.1 2305683 2306615 R KEGG: slo:Shew_1773 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2305683..2306615) Shewanella sediminis HAW-EB3 5610679 YP_001473657.1 CDS Ssed_1918 NC_009831.1 2306880 2308601 D KEGG: hch:HCH_04204 ABC-type sugar transport system, periplasmic component; sugar ABC transporter periplasmic protein 2306880..2308601 Shewanella sediminis HAW-EB3 5610680 YP_001473658.1 CDS Ssed_1919 NC_009831.1 2308588 2309331 D KEGG: hch:HCH_01467 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein 2308588..2309331 Shewanella sediminis HAW-EB3 5612907 YP_001473659.1 CDS ddl NC_009831.1 2309461 2310462 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(2309461..2310462) Shewanella sediminis HAW-EB3 5612908 YP_001473660.1 CDS Ssed_1921 NC_009831.1 2310695 2311162 D KEGG: shm:Shewmr7_0516 transcriptional regulator, MarR family; MarR family transcriptional regulator 2310695..2311162 Shewanella sediminis HAW-EB3 5612909 YP_001473661.1 CDS Ssed_1922 NC_009831.1 2311193 2312251 D KEGG: vpa:VPA1218 secretion protein; secretion protein 2311193..2312251 Shewanella sediminis HAW-EB3 5612910 YP_001473662.1 CDS Ssed_1923 NC_009831.1 2312465 2313538 D KEGG: aha:AHA_1238 hypothetical protein; hypothetical protein 2312465..2313538 Shewanella sediminis HAW-EB3 5611214 YP_001473663.1 CDS Ssed_1924 NC_009831.1 2313621 2314289 R KEGG: son:SO4298 cyclic nucleotide binding protein; cyclic nucleotide binding protein complement(2313621..2314289) Shewanella sediminis HAW-EB3 5611215 YP_001473664.1 CDS Ssed_1925 NC_009831.1 2314499 2315206 D KEGG: vpa:VPA1475 purine nucleoside phosphorylase; purine nucleoside phosphorylase 2314499..2315206 Shewanella sediminis HAW-EB3 5611216 YP_001473665.1 CDS ushA NC_009831.1 2315363 2317069 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2315363..2317069) Shewanella sediminis HAW-EB3 5611217 YP_001473666.1 CDS Ssed_1927 NC_009831.1 2317502 2317921 D hypothetical protein 2317502..2317921 Shewanella sediminis HAW-EB3 5611103 YP_001473667.1 CDS Ssed_1928 NC_009831.1 2318118 2318825 D KEGG: pin:Ping_1348 hypothetical protein; hypothetical protein 2318118..2318825 Shewanella sediminis HAW-EB3 5611104 YP_001473668.1 CDS Ssed_1929 NC_009831.1 2318938 2319639 D KEGG: spc:Sputcn32_3993 hypothetical protein; hypothetical protein 2318938..2319639 Shewanella sediminis HAW-EB3 5611105 YP_001473669.1 CDS Ssed_1930 NC_009831.1 2319830 2320132 D KEGG: cps:CPS_2552 hypothetical protein; hypothetical protein 2319830..2320132 Shewanella sediminis HAW-EB3 5611260 YP_001473670.1 CDS Ssed_1931 NC_009831.1 2320237 2320578 R KEGG: cbo:CBO0433 hydrogenase nickel incorporation protein; hydrogenase nickel incorporation protein complement(2320237..2320578) Shewanella sediminis HAW-EB3 5611261 YP_001473671.1 CDS Ssed_1932 NC_009831.1 2320657 2323344 R KEGG: cbo:CBO0432 pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase complement(2320657..2323344) Shewanella sediminis HAW-EB3 5611262 YP_001473672.1 CDS Ssed_1933 NC_009831.1 2323457 2324128 R KEGG: cbo:CBO0431 hydrogenase nickel incorporation protein; hydrogenase nickel incorporation protein complement(2323457..2324128) Shewanella sediminis HAW-EB3 5611263 YP_001473673.1 CDS Ssed_1934 NC_009831.1 2324596 2326500 D KEGG: ppr:PBPRB0486 hypothetical protein; hypothetical protein 2324596..2326500 Shewanella sediminis HAW-EB3 5611321 YP_001473674.1 CDS Ssed_1935 NC_009831.1 2326656 2328707 R KEGG: slo:Shew_2131 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V complement(2326656..2328707) Shewanella sediminis HAW-EB3 5611322 YP_001473675.1 CDS Ssed_1936 NC_009831.1 2328704 2332459 R KEGG: slo:Shew_2130 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta complement(2328704..2332459) Shewanella sediminis HAW-EB3 5611323 YP_001473676.1 CDS Ssed_1937 NC_009831.1 2332461 2336024 R KEGG: slo:Shew_2129 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma complement(2332461..2336024) Shewanella sediminis HAW-EB3 5611324 YP_001473677.1 CDS Ssed_1938 NC_009831.1 2336643 2337917 D KEGG: hch:HCH_03999 nitrate/nitrite transporter; nitrate/nitrite transporter 2336643..2337917 Shewanella sediminis HAW-EB3 5610331 YP_001473678.1 CDS Ssed_1939 NC_009831.1 2338069 2338389 R KEGG: shn:Shewana3_1142 hypothetical protein; hypothetical protein complement(2338069..2338389) Shewanella sediminis HAW-EB3 5610332 YP_001473679.1 CDS Ssed_1940 NC_009831.1 2339033 2340037 D KEGG: shn:Shewana3_0877 sugar-binding protein; sugar-binding protein 2339033..2340037 Shewanella sediminis HAW-EB3 5610333 YP_001473680.1 CDS Ssed_1941 NC_009831.1 2341000 2342286 D KEGG: sfr:Sfri_3838 hypothetical protein; hypothetical protein 2341000..2342286 Shewanella sediminis HAW-EB3 5610334 YP_001473681.1 CDS Ssed_1942 NC_009831.1 2342318 2344330 D KEGG: sfr:Sfri_3839 peptidase S15; peptidase S15 2342318..2344330 Shewanella sediminis HAW-EB3 5611370 YP_001473682.1 CDS Ssed_1943 NC_009831.1 2345093 2345488 D KEGG: asa:ASA_P4G164 transposase; transposase 2345093..2345488 Shewanella sediminis HAW-EB3 5611371 YP_001473683.1 CDS Ssed_1946 NC_009831.1 2347133 2347708 D KEGG: vvy:VVA0641 cytochrome c553; cytochrome c553 2347133..2347708 Shewanella sediminis HAW-EB3 5611294 YP_001473684.1 CDS Ssed_1947 NC_009831.1 2347716 2348294 D KEGG: vvu:VV2_0131 nitrate/TMAO reductase; nitrate/TMAO reductase 2347716..2348294 Shewanella sediminis HAW-EB3 5611295 YP_001473685.1 CDS Ssed_1948 NC_009831.1 2349116 2350096 D KEGG: sdn:Sden_3680 protein of unknown function DUF1568; hypothetical protein 2349116..2350096 Shewanella sediminis HAW-EB3 5611296 YP_001473686.1 CDS Ssed_1949 NC_009831.1 2351145 2352920 R KEGG: tdn:Tmden_0239 protein of unknown function DUF87; hypothetical protein complement(2351145..2352920) Shewanella sediminis HAW-EB3 5611297 YP_001473687.1 CDS Ssed_1950 NC_009831.1 2352917 2353855 R KEGG: tdn:Tmden_0238 hypothetical protein; hypothetical protein complement(2352917..2353855) Shewanella sediminis HAW-EB3 5610342 YP_001473688.1 CDS Ssed_1951 NC_009831.1 2354966 2355607 R KEGG: pau:PA14_13730 nitrate/nitrite response regulator; NarL; nitrate/nitrite response regulator; NarL complement(2354966..2355607) Shewanella sediminis HAW-EB3 5610343 YP_001473689.1 CDS Ssed_1952 NC_009831.1 2355702 2357477 R KEGG: psa:PST_0892 two-component sensor NarX; two-component sensor NarX complement(2355702..2357477) Shewanella sediminis HAW-EB3 5610344 YP_001473690.1 CDS Ssed_1953 NC_009831.1 2357847 2359451 D KEGG: hch:HCH_04020 nitrate/nitrite transporter; nitrate/nitrite transporter 2357847..2359451 Shewanella sediminis HAW-EB3 5610345 YP_001473691.1 CDS Ssed_1954 NC_009831.1 2359595 2363359 D KEGG: psa:PST_0896 respiratory nitrate reductase alpha chain; respiratory nitrate reductase subunit alpha 2359595..2363359 Shewanella sediminis HAW-EB3 5614020 YP_001473692.1 CDS Ssed_1955 NC_009831.1 2363372 2364910 D KEGG: pau:PA14_13800 respiratory nitrate reductase beta subuni; respiratory nitrate reductase beta subuni 2363372..2364910 Shewanella sediminis HAW-EB3 5614021 YP_001473693.1 CDS Ssed_1956 NC_009831.1 2364914 2365648 D KEGG: maq:Maqu_3084 nitrate reductase molybdenum cofactor assembly chaperone; nitrate reductase molybdenum cofactor assembly chaperone 2364914..2365648 Shewanella sediminis HAW-EB3 5614022 YP_001473694.1 CDS Ssed_1957 NC_009831.1 2365659 2366336 D KEGG: psa:PST_0899 respiratory nitrate reductase gamma chain; nitrate reductase 2365659..2366336 Shewanella sediminis HAW-EB3 5610597 YP_001473695.1 CDS Ssed_1958 NC_009831.1 2366676 2367488 D KEGG: psa:PST_0900 probable peptidyl-prolyl cis-trans isomerase, PpiC-type; peptidyl-prolyl cis-trans isomerase, PpiC-type 2366676..2367488 Shewanella sediminis HAW-EB3 5610598 YP_001473696.1 CDS Ssed_1959 NC_009831.1 2367649 2367978 D hypothetical protein 2367649..2367978 Shewanella sediminis HAW-EB3 5610599 YP_001473697.1 CDS Ssed_1960 NC_009831.1 2368129 2368671 R KEGG: tcx:Tcr_1929 HPP; hypothetical protein complement(2368129..2368671) Shewanella sediminis HAW-EB3 5610600 YP_001473698.1 CDS Ssed_1961 NC_009831.1 2368798 2369061 R KEGG: vfi:VF1659 hypothetical protein; hypothetical protein complement(2368798..2369061) Shewanella sediminis HAW-EB3 5611535 YP_001473699.1 CDS Ssed_1962 NC_009831.1 2369222 2369617 R KEGG: har:HEAR1663 hypothetical protein; hypothetical protein complement(2369222..2369617) Shewanella sediminis HAW-EB3 5611536 YP_001473700.1 CDS Ssed_1963 NC_009831.1 2369778 2371508 R KEGG: hch:HCH_04002 serine/threonine protein kinase; serine/threonine protein kinase complement(2369778..2371508) Shewanella sediminis HAW-EB3 5611537 YP_001473701.1 CDS Ssed_1964 NC_009831.1 2371589 2373064 R KEGG: hch:HCH_04000 nitrate/nitrite transporter; nitrate/nitrite transporter complement(2371589..2373064) Shewanella sediminis HAW-EB3 5611538 YP_001473702.1 CDS Ssed_1965 NC_009831.1 2373615 2375639 R KEGG: slo:Shew_2128 transglutaminase domain protein; transglutaminase domain-containing protein complement(2373615..2375639) Shewanella sediminis HAW-EB3 5611456 YP_001473703.1 CDS Ssed_1966 NC_009831.1 2375636 2376625 R KEGG: slo:Shew_2127 protein of unknown function DUF58; hypothetical protein complement(2375636..2376625) Shewanella sediminis HAW-EB3 5611457 YP_001473704.1 CDS Ssed_1967 NC_009831.1 2376641 2377552 R KEGG: slo:Shew_2126 ATPase associated with various cellular activities, AAA_3; ATPase complement(2376641..2377552) Shewanella sediminis HAW-EB3 5611458 YP_001473705.1 CDS Ssed_1968 NC_009831.1 2377699 2378394 R KEGG: shm:Shewmr7_1862 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(2377699..2378394) Shewanella sediminis HAW-EB3 5611459 YP_001473706.1 CDS Ssed_1969 NC_009831.1 2379071 2379772 D hypothetical protein 2379071..2379772 Shewanella sediminis HAW-EB3 5612247 YP_001473707.1 CDS Ssed_1970 NC_009831.1 2379921 2381882 D hypothetical protein 2379921..2381882 Shewanella sediminis HAW-EB3 5612248 YP_001473708.1 CDS Ssed_1971 NC_009831.1 2382140 2382952 R KEGG: lpf:lpl0800 hypothetical protein; hypothetical protein complement(2382140..2382952) Shewanella sediminis HAW-EB3 5612249 YP_001473709.1 CDS Ssed_1972 NC_009831.1 2382985 2383251 R KEGG: lpp:lpp0199 hypothetical protein; hypothetical protein complement(2382985..2383251) Shewanella sediminis HAW-EB3 5612485 YP_001473710.1 CDS Ssed_1973 NC_009831.1 2383623 2384891 R KEGG: pat:Patl_2252 histidine kinase; histidine kinase complement(2383623..2384891) Shewanella sediminis HAW-EB3 5612486 YP_001473711.1 CDS Ssed_1974 NC_009831.1 2384888 2385559 R KEGG: sfr:Sfri_3676 two component transcriptional regulator, winged helix family protein; two component transcriptional regulator, winged helix family protein complement(2384888..2385559) Shewanella sediminis HAW-EB3 5612487 YP_001473712.1 CDS Ssed_1975 NC_009831.1 2385553 2388741 R KEGG: pat:Patl_3597 acriflavin resistance protein; acriflavin resistance protein complement(2385553..2388741) Shewanella sediminis HAW-EB3 5612488 YP_001473713.1 CDS Ssed_1976 NC_009831.1 2388741 2389979 R KEGG: sfr:Sfri_3678 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2388741..2389979) Shewanella sediminis HAW-EB3 5611873 YP_001473714.1 CDS Ssed_1977 NC_009831.1 2389976 2391373 R KEGG: sfr:Sfri_3679 RND efflux system, outer membrane lipoprotein, NodT family protein; RND efflux system, outer membrane lipoprotein, NodT family protein complement(2389976..2391373) Shewanella sediminis HAW-EB3 5611874 YP_001473715.1 CDS Ssed_1978 NC_009831.1 2391644 2391958 R KEGG: sbl:Sbal_1230 hypothetical protein; hypothetical protein complement(2391644..2391958) Shewanella sediminis HAW-EB3 5611875 YP_001473716.1 CDS Ssed_1979 NC_009831.1 2392308 2394257 R KEGG: slo:Shew_2125 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(2392308..2394257) Shewanella sediminis HAW-EB3 5611876 YP_001473717.1 CDS Ssed_1980 NC_009831.1 2394344 2395891 R KEGG: shm:Shewmr7_1864 protein of unknown function DUF195; hypothetical protein complement(2394344..2395891) Shewanella sediminis HAW-EB3 5612689 YP_001473718.1 CDS Ssed_1981 NC_009831.1 2396144 2397166 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 2396144..2397166 Shewanella sediminis HAW-EB3 5612690 YP_001473719.1 CDS Ssed_1982 NC_009831.1 2397180 2397809 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 2397180..2397809 Shewanella sediminis HAW-EB3 5612691 YP_001473720.1 CDS Ssed_1983 NC_009831.1 2397997 2399643 D KEGG: slo:Shew_2119 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2397997..2399643 Shewanella sediminis HAW-EB3 5612797 YP_001473721.1 CDS Ssed_1984 NC_009831.1 2399804 2400298 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2399804..2400298 Shewanella sediminis HAW-EB3 5612798 YP_001473722.1 CDS Ssed_1985 NC_009831.1 2400317 2402152 D KEGG: sbl:Sbal_1993 AsmA family protein; AsmA family protein 2400317..2402152 Shewanella sediminis HAW-EB3 5612799 YP_001473723.1 CDS Ssed_1986 NC_009831.1 2402152 2402739 D KEGG: sbl:Sbal_1994 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein 2402152..2402739 Shewanella sediminis HAW-EB3 5612800 YP_001473724.1 CDS Ssed_1987 NC_009831.1 2402906 2404462 R KEGG: sfr:Sfri_3219 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor complement(2402906..2404462) Shewanella sediminis HAW-EB3 5612820 YP_001473725.1 CDS Ssed_1988 NC_009831.1 2404695 2406254 R KEGG: slo:Shew_2115 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(2404695..2406254) Shewanella sediminis HAW-EB3 5612821 YP_001473726.1 CDS Ssed_1989 NC_009831.1 2406343 2407161 R KEGG: slo:Shew_2114 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(2406343..2407161) Shewanella sediminis HAW-EB3 5612822 YP_001473727.1 CDS Ssed_1990 NC_009831.1 2407343 2408077 D KEGG: slo:Shew_2113 hypothetical protein; hypothetical protein 2407343..2408077 Shewanella sediminis HAW-EB3 5612823 YP_001473728.1 CDS Ssed_1991 NC_009831.1 2408187 2409083 D KEGG: shw:Sputw3181_2247 transcriptional regulator, LysR family; LysR family transcriptional regulator 2408187..2409083 Shewanella sediminis HAW-EB3 5613369 YP_001473729.1 CDS rnhA NC_009831.1 2409189 2409659 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(2409189..2409659) Shewanella sediminis HAW-EB3 5613370 YP_001473730.1 CDS Ssed_1993 NC_009831.1 2409727 2410455 D KEGG: slo:Shew_2111 DNA polymerase III, epsilon subunit; DNA-directed DNA polymerase 2409727..2410455 Shewanella sediminis HAW-EB3 5613371 YP_001473731.1 CDS Ssed_1994 NC_009831.1 2410466 2411782 D KEGG: slo:Shew_2110 hypothetical protein; hypothetical protein 2410466..2411782 Shewanella sediminis HAW-EB3 5613372 YP_001473732.1 CDS Ssed_1995 NC_009831.1 2413006 2413830 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(2413006..2413830) Shewanella sediminis HAW-EB3 5612434 YP_001473733.1 CDS Ssed_1996 NC_009831.1 2413963 2414892 D KEGG: aha:AHA_0957 HTH-type transcriptional regulator XapR; HTH-type transcriptional regulator XapR 2413963..2414892 Shewanella sediminis HAW-EB3 5612846 YP_001473734.1 CDS Ssed_1997 NC_009831.1 2414974 2416587 R KEGG: pat:Patl_0405 peptidase M28; peptidase M28 complement(2414974..2416587) Shewanella sediminis HAW-EB3 5612847 YP_001473735.1 CDS Ssed_1998 NC_009831.1 2416856 2418706 D KEGG: sdn:Sden_1732 sodium/hydrogen exchanger; sodium/hydrogen exchanger 2416856..2418706 Shewanella sediminis HAW-EB3 5613580 YP_001473736.1 CDS fadE NC_009831.1 2418841 2421288 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2418841..2421288) Shewanella sediminis HAW-EB3 5613581 YP_001473737.1 CDS Ssed_2000 NC_009831.1 2421529 2422308 D KEGG: slo:Shew_2107 glutamine amidotransferase, class-II; glutamine amidotransferase, class-II 2421529..2422308 Shewanella sediminis HAW-EB3 5613582 YP_001473738.1 CDS Ssed_2001 NC_009831.1 2422346 2422588 D hypothetical protein 2422346..2422588 Shewanella sediminis HAW-EB3 5613583 YP_001473739.1 CDS Ssed_2002 NC_009831.1 2422678 2423445 R KEGG: slo:Shew_2106 hypothetical protein; hypothetical protein complement(2422678..2423445) Shewanella sediminis HAW-EB3 5611460 YP_001473740.1 CDS Ssed_2003 NC_009831.1 2423649 2424029 R KEGG: spc:Sputcn32_1794 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2423649..2424029) Shewanella sediminis HAW-EB3 5611461 YP_001473741.1 CDS Ssed_2004 NC_009831.1 2424216 2424902 D hypothetical protein 2424216..2424902 Shewanella sediminis HAW-EB3 5611462 YP_001473742.1 CDS Ssed_2005 NC_009831.1 2424950 2426671 R KEGG: slo:Shew_2104 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2424950..2426671) Shewanella sediminis HAW-EB3 5611463 YP_001473743.1 CDS def NC_009831.1 2426911 2427402 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2426911..2427402 Shewanella sediminis HAW-EB3 5612152 YP_001473744.1 CDS Ssed_2007 NC_009831.1 2427516 2428931 R KEGG: saz:Sama_1866 two-component system sensor kinase; two-component system sensor kinase complement(2427516..2428931) Shewanella sediminis HAW-EB3 5612153 YP_001473745.1 CDS Ssed_2008 NC_009831.1 2429089 2429613 D KEGG: slo:Shew_2099 DTW domain containing protein; DTW domain-containing protein 2429089..2429613 Shewanella sediminis HAW-EB3 5612154 YP_001473746.1 CDS Ssed_2009 NC_009831.1 2429778 2433242 R KEGG: son:SO0404 hypothetical protein; hypothetical protein complement(2429778..2433242) Shewanella sediminis HAW-EB3 5613928 YP_001473747.1 CDS Ssed_2010 NC_009831.1 2433269 2434162 R KEGG: son:SO0403 hypothetical protein; hypothetical protein complement(2433269..2434162) Shewanella sediminis HAW-EB3 5613929 YP_001473748.1 CDS Ssed_2011 NC_009831.1 2434913 2435023 D KEGG: vpa:VP2892 hypothetical protein; hypothetical protein 2434913..2435023 Shewanella sediminis HAW-EB3 5613930 YP_001473749.1 CDS Ssed_2012 NC_009831.1 2435236 2435916 R KEGG: slo:Shew_2098 channel protein, hemolysin III family; hemolysin III family channel protein complement(2435236..2435916) Shewanella sediminis HAW-EB3 5613931 YP_001473750.1 CDS Ssed_2013 NC_009831.1 2436682 2438640 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2436682..2438640 Shewanella sediminis HAW-EB3 5614092 YP_001473751.1 CDS Ssed_2014 NC_009831.1 2438644 2440317 D KEGG: spc:Sputcn32_1923 thiamine-phosphate pyrophosphorylase; phosphomethylpyrimidine kinase, thiamine-phosphate diphosphorylase 2438644..2440317 Shewanella sediminis HAW-EB3 5614093 YP_001473752.1 CDS Ssed_2015 NC_009831.1 2440310 2441188 D KEGG: sbl:Sbal_2024 UBA/ThiF-type NAD/FAD binding protein; UBA/ThiF-type NAD/FAD binding protein 2440310..2441188 Shewanella sediminis HAW-EB3 5614094 YP_001473753.1 CDS Ssed_2016 NC_009831.1 2441175 2441420 D KEGG: shw:Sputw3181_2083 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2441175..2441420 Shewanella sediminis HAW-EB3 5614095 YP_001473754.1 CDS Ssed_2017 NC_009831.1 2441422 2442186 D KEGG: shn:Shewana3_1940 thiazole biosynthesis family protein; thiazole biosynthesis family protein 2441422..2442186 Shewanella sediminis HAW-EB3 5613839 YP_001473755.1 CDS thiH NC_009831.1 2442223 2443347 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2442223..2443347 Shewanella sediminis HAW-EB3 5613840 YP_001473756.1 CDS Ssed_2019 NC_009831.1 2443572 2443841 D KEGG: slo:Shew_2090 conserved hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2443572..2443841 Shewanella sediminis HAW-EB3 5613841 YP_001473757.1 CDS Ssed_2020 NC_009831.1 2443847 2445286 D KEGG: slo:Shew_2089 SrpA-related protein; SrpA-like protein 2443847..2445286 Shewanella sediminis HAW-EB3 5613842 YP_001473758.1 CDS Ssed_2021 NC_009831.1 2445314 2446213 R KEGG: sbl:Sbal_2030 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2445314..2446213) Shewanella sediminis HAW-EB3 5614049 YP_001473759.1 CDS Ssed_2022 NC_009831.1 2446521 2447615 R KEGG: slo:Shew_2087 hypothetical protein; hypothetical protein complement(2446521..2447615) Shewanella sediminis HAW-EB3 5614050 YP_001473760.1 CDS Ssed_2023 NC_009831.1 2447569 2449317 R KEGG: sbl:Sbal_2031 response regulator receiver protein; response regulator receiver protein complement(2447569..2449317) Shewanella sediminis HAW-EB3 5614051 YP_001473761.1 CDS Ssed_2024 NC_009831.1 2449280 2450242 R KEGG: slo:Shew_2085 alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase complement(2449280..2450242) Shewanella sediminis HAW-EB3 5613759 YP_001473762.1 CDS Ssed_2025 NC_009831.1 2450245 2451756 R KEGG: slo:Shew_2084 gonadoliberin III-related protein; gonadoliberin III-like protein complement(2450245..2451756) Shewanella sediminis HAW-EB3 5613760 YP_001473763.1 CDS Ssed_2026 NC_009831.1 2451768 2452511 R KEGG: slo:Shew_2083 protein of unknown function DUF785; hypothetical protein complement(2451768..2452511) Shewanella sediminis HAW-EB3 5613761 YP_001473764.1 CDS Ssed_2027 NC_009831.1 2452610 2453602 R KEGG: slo:Shew_2082 methyltransferase; methyltransferase complement(2452610..2453602) Shewanella sediminis HAW-EB3 5613762 YP_001473765.1 CDS Ssed_2028 NC_009831.1 2453706 2454437 R KEGG: slo:Shew_2081 methyltransferase; methyltransferase complement(2453706..2454437) Shewanella sediminis HAW-EB3 5613969 YP_001473766.1 CDS Ssed_2029 NC_009831.1 2454584 2457382 D KEGG: shn:Shewana3_1952 diguanylate cyclase; diguanylate cyclase 2454584..2457382 Shewanella sediminis HAW-EB3 5613970 YP_001473767.1 CDS aspS NC_009831.1 2457554 2459341 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2457554..2459341 Shewanella sediminis HAW-EB3 5613971 YP_001473768.1 CDS Ssed_2031 NC_009831.1 2459429 2460175 D KEGG: slo:Shew_2078 protein of unknown function DUF28; hypothetical protein 2459429..2460175 Shewanella sediminis HAW-EB3 5613972 YP_001473769.1 CDS ruvC NC_009831.1 2460179 2460700 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2460179..2460700 Shewanella sediminis HAW-EB3 5614216 YP_001473770.1 CDS ruvA NC_009831.1 2460697 2461314 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2460697..2461314 Shewanella sediminis HAW-EB3 5614217 YP_001473771.1 CDS ruvB NC_009831.1 2461338 2462354 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2461338..2462354 Shewanella sediminis HAW-EB3 5614218 YP_001473772.1 CDS Ssed_2035 NC_009831.1 2462594 2463610 D KEGG: cef:CE1569 hypothetical protein; hypothetical protein 2462594..2463610 Shewanella sediminis HAW-EB3 5613770 YP_001473773.1 CDS Ssed_2036 NC_009831.1 2464419 2466944 D KEGG: spc:Sputcn32_1940 TonB-dependent receptor; TonB-dependent receptor 2464419..2466944 Shewanella sediminis HAW-EB3 5613771 YP_001473774.1 CDS Ssed_2037 NC_009831.1 2467287 2467697 R KEGG: slo:Shew_2073 lactoylglutathione lyase; lactoylglutathione lyase complement(2467287..2467697) Shewanella sediminis HAW-EB3 5613772 YP_001473775.1 CDS Ssed_2038 NC_009831.1 2468359 2468997 R KEGG: shm:Shewmr7_1905 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase complement(2468359..2468997) Shewanella sediminis HAW-EB3 5613773 YP_001473776.1 CDS Ssed_2039 NC_009831.1 2469030 2469740 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(2469030..2469740) Shewanella sediminis HAW-EB3 5614004 YP_001473777.1 CDS Ssed_2040 NC_009831.1 2469737 2470363 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG complement(2469737..2470363) Shewanella sediminis HAW-EB3 5614005 YP_001473778.1 CDS rnfD NC_009831.1 2470393 2471445 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD complement(2470393..2471445) Shewanella sediminis HAW-EB3 5614006 YP_001473779.1 CDS Ssed_2042 NC_009831.1 2471449 2473977 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(2471449..2473977) Shewanella sediminis HAW-EB3 5614007 YP_001473780.1 CDS Ssed_2043 NC_009831.1 2473971 2474540 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(2473971..2474540) Shewanella sediminis HAW-EB3 5610784 YP_001473781.1 CDS Ssed_2044 NC_009831.1 2474543 2475121 R KEGG: shm:Shewmr7_1911 electron transport complex, RnfABCDGE type, A subunit; Na(+)-translocating NADH-quinone reductase subunit E complement(2474543..2475121) Shewanella sediminis HAW-EB3 5610785 YP_001473782.1 CDS Ssed_2045 NC_009831.1 2475230 2477128 R KEGG: shn:Shewana3_2167 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(2475230..2477128) Shewanella sediminis HAW-EB3 5610786 YP_001473783.1 CDS Ssed_2046 NC_009831.1 2479256 2481283 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2479256..2481283 Shewanella sediminis HAW-EB3 5614059 YP_001473784.1 CDS Ssed_2047 NC_009831.1 2481323 2481838 R KEGG: shw:Sputw3181_2156 rhomboid family protein; rhomboid family protein complement(2481323..2481838) Shewanella sediminis HAW-EB3 5609978 YP_001473785.1 CDS Ssed_2048 NC_009831.1 2481935 2482633 R KEGG: slo:Shew_2062 ExsB protein; ExsB protein complement(2481935..2482633) Shewanella sediminis HAW-EB3 5609979 YP_001473786.1 CDS Ssed_2049 NC_009831.1 2482821 2483489 D KEGG: spc:Sputcn32_1855 radical activating enzyme; radical activating enzyme 2482821..2483489 Shewanella sediminis HAW-EB3 5609980 YP_001473787.1 CDS Ssed_2050 NC_009831.1 2483486 2484547 R KEGG: slo:Shew_2060 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(2483486..2484547) Shewanella sediminis HAW-EB3 5611305 YP_001473788.1 CDS Ssed_2051 NC_009831.1 2485769 2486272 D KEGG: shm:Shewmr7_1918 hypothetical protein; hypothetical protein 2485769..2486272 Shewanella sediminis HAW-EB3 5609647 YP_001473789.1 CDS Ssed_2052 NC_009831.1 2486551 2486838 D KEGG: sbl:Sbal_4537 hypothetical protein; hypothetical protein 2486551..2486838 Shewanella sediminis HAW-EB3 5611307 YP_001473790.1 CDS Ssed_2053 NC_009831.1 2487012 2489180 D KEGG: saz:Sama_1821 diguanylate phosphodiesterase; diguanylate phosphodiesterase 2487012..2489180 Shewanella sediminis HAW-EB3 5611308 YP_001473791.1 CDS Ssed_2054 NC_009831.1 2489235 2489720 R KEGG: slo:Shew_2056 sec-C motif domain protein; SecC motif-containing protein complement(2489235..2489720) Shewanella sediminis HAW-EB3 5612381 YP_001473792.1 CDS Ssed_2055 NC_009831.1 2489710 2490279 R KEGG: slo:Shew_2055 hypothetical protein; hypothetical protein complement(2489710..2490279) Shewanella sediminis HAW-EB3 5612382 YP_001473793.1 CDS Ssed_2056 NC_009831.1 2490380 2490970 D KEGG: she:Shewmr4_2052 Smr protein/MutS2; Smr protein/MutS2 2490380..2490970 Shewanella sediminis HAW-EB3 5612383 YP_001473794.1 CDS Ssed_2057 NC_009831.1 2491071 2492906 R KEGG: slo:Shew_2053 peptidyl-dipeptidase A; peptidyl-dipeptidase A complement(2491071..2492906) Shewanella sediminis HAW-EB3 5612384 YP_001473795.1 CDS Ssed_2058 NC_009831.1 2493092 2494318 R KEGG: sde:Sde_2468 amine oxidase, flavin-containing; NAD/FAD-binding protein-like protein complement(2493092..2494318) Shewanella sediminis HAW-EB3 5611687 YP_001473796.1 CDS Ssed_2059 NC_009831.1 2494356 2495885 R KEGG: ana:alr4631 unknown protein; hypothetical protein complement(2494356..2495885) Shewanella sediminis HAW-EB3 5611688 YP_001473797.1 CDS Ssed_2060 NC_009831.1 2496175 2496774 D KEGG: sfr:Sfri_3117 hypothetical protein; hypothetical protein 2496175..2496774 Shewanella sediminis HAW-EB3 5611689 YP_001473798.1 CDS Ssed_2061 NC_009831.1 2497101 2497325 D KEGG: pin:Ping_1766 hypothetical protein; hypothetical protein 2497101..2497325 Shewanella sediminis HAW-EB3 5612269 YP_001473799.1 CDS Ssed_2062 NC_009831.1 2497435 2498352 D KEGG: ppr:PBPRA1847 hypothetical protein; hypothetical protein 2497435..2498352 Shewanella sediminis HAW-EB3 5612270 YP_001473800.1 CDS Ssed_2063 NC_009831.1 2498422 2498889 D KEGG: vch:VCA0330 hypothetical protein; hypothetical protein 2498422..2498889 Shewanella sediminis HAW-EB3 5612271 YP_001473801.1 CDS Ssed_2064 NC_009831.1 2498889 2499740 D KEGG: ilo:IL2088 predicted hydrolase of the alpha/beta superfamily; alpha/beta fold family hydrolase 2498889..2499740 Shewanella sediminis HAW-EB3 5612272 YP_001473802.1 CDS Ssed_2065 NC_009831.1 2499849 2501222 R KEGG: ppr:PBPRA1999 transporter, NadC family; NadC family transporter complement(2499849..2501222) Shewanella sediminis HAW-EB3 5614116 YP_001473803.1 CDS Ssed_2066 NC_009831.1 2501969 2502604 D KEGG: saz:Sama_1816 transcriptional regulator, TetR family; TetR family transcriptional regulator 2501969..2502604 Shewanella sediminis HAW-EB3 5614117 YP_001473804.1 CDS Ssed_2067 NC_009831.1 2502628 2504904 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2502628..2504904 Shewanella sediminis HAW-EB3 5614118 YP_001473805.1 CDS Ssed_2068 NC_009831.1 2505238 2506677 R KEGG: slo:Shew_2050 pyruvate kinase; pyruvate kinase complement(2505238..2506677) Shewanella sediminis HAW-EB3 5614119 YP_001473806.1 CDS Ssed_2069 NC_009831.1 2506862 2507716 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(2506862..2507716) Shewanella sediminis HAW-EB3 5611539 YP_001473807.1 CDS Ssed_2070 NC_009831.1 2508026 2509498 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2508026..2509498 Shewanella sediminis HAW-EB3 5611540 YP_001473808.1 CDS Ssed_2071 NC_009831.1 2509511 2510209 D KEGG: sbl:Sbal_4526 hypothetical protein; hypothetical protein 2509511..2510209 Shewanella sediminis HAW-EB3 5611541 YP_001473809.1 CDS Ssed_2072 NC_009831.1 2510219 2512045 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2510219..2512045 Shewanella sediminis HAW-EB3 5611542 YP_001473810.1 CDS Ssed_2073 NC_009831.1 2512063 2512704 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2512063..2512704 Shewanella sediminis HAW-EB3 5614244 YP_001473811.1 CDS Ssed_2074 NC_009831.1 2512795 2513364 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2512795..2513364) Shewanella sediminis HAW-EB3 5614245 YP_001473812.1 CDS Ssed_2075 NC_009831.1 2513731 2514756 D KEGG: slo:Shew_2043 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2513731..2514756 Shewanella sediminis HAW-EB3 5614246 YP_001473813.1 CDS Ssed_2076 NC_009831.1 2514787 2515206 D KEGG: shn:Shewana3_2230 transcriptional regulator, MarR family; MarR family transcriptional regulator 2514787..2515206 Shewanella sediminis HAW-EB3 5610513 YP_001473814.1 CDS Ssed_2077 NC_009831.1 2515587 2516618 D KEGG: slo:Shew_2040 diguanylate cyclase; diguanylate cyclase 2515587..2516618 Shewanella sediminis HAW-EB3 5610514 YP_001473815.1 CDS Ssed_2078 NC_009831.1 2516697 2519387 R KEGG: slo:Shew_2039 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2516697..2519387) Shewanella sediminis HAW-EB3 5610515 YP_001473816.1 CDS Ssed_2079 NC_009831.1 2519819 2520760 R cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase complement(2519819..2520760) Shewanella sediminis HAW-EB3 5610516 YP_001473817.1 CDS Ssed_2080 NC_009831.1 2521360 2522475 D KEGG: lbl:LBL_4195 cobalamin biosynthesis protein; cobalamin biosynthesis protein 2521360..2522475 Shewanella sediminis HAW-EB3 5611286 YP_001473818.1 CDS Ssed_2081 NC_009831.1 2522475 2523131 D KEGG: mca:MCA2298 precorrin-8X methylmutase; precorrin-8X methylmutase 2522475..2523131 Shewanella sediminis HAW-EB3 5611287 YP_001473819.1 CDS Ssed_2082 NC_009831.1 2523128 2524384 D KEGG: lbl:LBL_4197 precorrin-6Y C5,15-methyltransferase (decarboxylating); precorrin-6Y C(5,15)-methyltransferase 2523128..2524384 Shewanella sediminis HAW-EB3 5611288 YP_001473820.1 CDS Ssed_2083 NC_009831.1 2524381 2525139 D KEGG: lil:LB159 precorrin-2 methyltransferase; precorrin-2 methyltransferase 2524381..2525139 Shewanella sediminis HAW-EB3 5611289 YP_001473821.1 CDS Ssed_2084 NC_009831.1 2525139 2526665 D KEGG: lbl:LBL_4199 cobalamin biosynthesis protein CbiG; cobalamin biosynthesis protein CbiG-like protein 2525139..2526665 Shewanella sediminis HAW-EB3 5610450 YP_001473822.1 CDS Ssed_2085 NC_009831.1 2526776 2527591 D KEGG: pca:Pcar_0478 cobalt chelatase; cobalamin biosynthesis protein CbiK Co2+ chelatase-like protein 2526776..2527591 Shewanella sediminis HAW-EB3 5610451 YP_001473823.1 CDS Ssed_2086 NC_009831.1 2527588 2528451 D KEGG: lbl:LBL_4200 precorrin-3B C(17)-methyltransferase; precorrin-3B C(17)-methyltransferase 2527588..2528451 Shewanella sediminis HAW-EB3 5610452 YP_001473824.1 CDS Ssed_2087 NC_009831.1 2528448 2529221 D KEGG: lil:LB156 precorrin-3 methylase; precorrin-3 methylase 2528448..2529221 Shewanella sediminis HAW-EB3 5610464 YP_001473825.1 CDS Ssed_2088 NC_009831.1 2529218 2530585 D KEGG: dps:DP1734 probable uroporphyrinogen III synthase/methyltransferase (HemD+CobA); uroporphyrinogen-III methylase-like protein 2529218..2530585 Shewanella sediminis HAW-EB3 5610465 YP_001473826.1 CDS Ssed_2089 NC_009831.1 2530575 2531480 D KEGG: cobD; cobalamin biosynthetic protein; cobD; cobalamin biosynthetic protein 2530575..2531480 Shewanella sediminis HAW-EB3 5610466 YP_001473827.1 CDS Ssed_2090 NC_009831.1 2531477 2532595 D KEGG: psa:PST_1296 cobalamin biosynthetic protein CobC; cobalamin biosynthetic protein CobC 2531477..2532595 Shewanella sediminis HAW-EB3 5610467 YP_001473828.1 CDS Ssed_2091 NC_009831.1 2532946 2533683 D KEGG: shn:Shewana3_4008 transcriptional regulator, LuxR family; hypothetical protein 2532946..2533683 Shewanella sediminis HAW-EB3 5610505 YP_001473829.1 CDS Ssed_2092 NC_009831.1 2534170 2534940 D KEGG: rsp:RSP_6168 ABC cobalt transporter, periplasmic binding protein CbiN; cobalt ABC transporter substrate-binding protein CbiN 2534170..2534940 Shewanella sediminis HAW-EB3 5610506 YP_001473830.1 CDS Ssed_2093 NC_009831.1 2534950 2535555 D KEGG: mgm:Mmc1_3140 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM 2534950..2535555 Shewanella sediminis HAW-EB3 5610507 YP_001473831.1 CDS Ssed_2094 NC_009831.1 2535548 2536108 D KEGG: mag:amb4336 hypothetical protein; hypothetical protein 2535548..2536108 Shewanella sediminis HAW-EB3 5610508 YP_001473832.1 CDS Ssed_2095 NC_009831.1 2536105 2536872 D KEGG: rpc:RPC_1961 cobalt ABC transporter CbiQ, permease subunit; ABC-type cobalt transport system permease component CbiQ and related transporter-like protein 2536105..2536872 Shewanella sediminis HAW-EB3 5610272 YP_001473833.1 CDS Ssed_2096 NC_009831.1 2536919 2537584 D KEGG: rpc:RPC_1962 ABC transporter related; ABC transporter 2536919..2537584 Shewanella sediminis HAW-EB3 5610273 YP_001473834.1 CDS Ssed_2097 NC_009831.1 2537859 2538755 D KEGG: ppr:PBPRB1794 hypothetical protein; hypothetical protein 2537859..2538755 Shewanella sediminis HAW-EB3 5610274 YP_001473835.1 CDS Ssed_2098 NC_009831.1 2538866 2539675 R KEGG: sat:SYN_00385 hypothetical protein; hypothetical protein complement(2538866..2539675) Shewanella sediminis HAW-EB3 5610275 YP_001473836.1 CDS Ssed_2099 NC_009831.1 2540616 2540897 R KEGG: det:DET1558 reductive dehalogenase anchoring protein; reductive dehalogenase anchoring protein complement(2540616..2540897) Shewanella sediminis HAW-EB3 5612295 YP_001473837.1 CDS Ssed_2100 NC_009831.1 2540904 2542328 R KEGG: dsy:DSY2839 tetrachloroethene dehalogenase; tetrachloroethene dehalogenase complement(2540904..2542328) Shewanella sediminis HAW-EB3 5612296 YP_001473838.1 CDS Ssed_2101 NC_009831.1 2542457 2543368 R KEGG: ppr:PBPRB1899 hypothetical protein; hypothetical protein complement(2542457..2543368) Shewanella sediminis HAW-EB3 5612297 YP_001473839.1 CDS Ssed_2102 NC_009831.1 2543947 2545056 D KEGG: ter:Tery_1492 glycosyl transferase, family 2; hypothetical protein 2543947..2545056 Shewanella sediminis HAW-EB3 5612791 YP_001473840.1 CDS Ssed_2103 NC_009831.1 2545094 2546617 D KEGG: deb:DehaBAV1_0988 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hypothetical protein 2545094..2546617 Shewanella sediminis HAW-EB3 5612792 YP_001473841.1 CDS Ssed_2104 NC_009831.1 2546617 2546925 D hypothetical protein 2546617..2546925 Shewanella sediminis HAW-EB3 5612793 YP_001473842.1 CDS Ssed_2105 NC_009831.1 2547010 2548236 D KEGG: ppr:PBPRB1795 hypothetical protein; hypothetical protein 2547010..2548236 Shewanella sediminis HAW-EB3 5612794 YP_001473843.1 CDS Ssed_2106 NC_009831.1 2548518 2549393 D KEGG: ppr:PBPRB1794 hypothetical protein; hypothetical protein 2548518..2549393 Shewanella sediminis HAW-EB3 5614236 YP_001473844.1 CDS Ssed_2107 NC_009831.1 2549490 2550251 R KEGG: cps:CPS_4645 hypothetical protein; amino acid ABC transporter periplasmic protein complement(2549490..2550251) Shewanella sediminis HAW-EB3 5614237 YP_001473845.1 CDS Ssed_2108 NC_009831.1 2550465 2551034 D KEGG: sen:SACE_1433 probable phosphoglycerate mutase (phosphoglyceromutase); fructose-2 6-bisphosphatase-like protein 2550465..2551034 Shewanella sediminis HAW-EB3 5614238 YP_001473846.1 CDS Ssed_2109 NC_009831.1 2551794 2552438 D hypothetical protein 2551794..2552438 Shewanella sediminis HAW-EB3 5614239 YP_001473847.1 CDS Ssed_2110 NC_009831.1 2553316 2553978 D KEGG: pat:Patl_1418 transcriptional regulator, GntR family; GntR family transcriptional regulator 2553316..2553978 Shewanella sediminis HAW-EB3 5611809 YP_001473848.1 CDS prpB NC_009831.1 2554047 2554925 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2554047..2554925 Shewanella sediminis HAW-EB3 5611810 YP_001473849.1 CDS Ssed_2112 NC_009831.1 2555063 2556187 D KEGG: slo:Shew_1821 2-methylcitrate synthase/citrate synthase II; 2-methylcitrate synthase 2555063..2556187 Shewanella sediminis HAW-EB3 5611811 YP_001473850.1 CDS Ssed_2113 NC_009831.1 2556254 2558860 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2556254..2558860 Shewanella sediminis HAW-EB3 5611812 YP_001473851.1 CDS Ssed_2114 NC_009831.1 2558973 2560190 D KEGG: sfr:Sfri_1860 AcnD-accessory protein PrpF; AcnD-accessory protein PrpF 2558973..2560190 Shewanella sediminis HAW-EB3 5609950 YP_001473852.1 CDS Ssed_2115 NC_009831.1 2560368 2562017 R KEGG: ppr:PBPRA1657 Uup, ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATPase complement(2560368..2562017) Shewanella sediminis HAW-EB3 5609951 YP_001473853.1 CDS Ssed_2116 NC_009831.1 2562300 2562800 D KEGG: sfr:Sfri_0770 hypothetical protein; hypothetical protein 2562300..2562800 Shewanella sediminis HAW-EB3 5609952 YP_001473854.1 CDS Ssed_2117 NC_009831.1 2564557 2565933 R KEGG: slo:Shew_2037 MATE efflux family protein; MATE efflux family protein complement(2564557..2565933) Shewanella sediminis HAW-EB3 5613516 YP_001473855.1 CDS Ssed_2118 NC_009831.1 2565948 2566580 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2565948..2566580 Shewanella sediminis HAW-EB3 5613688 YP_001473856.1 CDS Ssed_2119 NC_009831.1 2566622 2566822 R KEGG: shn:Shewana3_2041 hypothetical protein; hypothetical protein complement(2566622..2566822) Shewanella sediminis HAW-EB3 5613689 YP_001473857.1 CDS Ssed_2120 NC_009831.1 2567679 2569607 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2567679..2569607 Shewanella sediminis HAW-EB3 5613690 YP_001473858.1 CDS Ssed_2121 NC_009831.1 2569818 2570153 D KEGG: slo:Shew_2031 translation initiation factor IF-3; translation initiation factor IF-3 2569818..2570153 Shewanella sediminis HAW-EB3 5610709 YP_001473859.1 CDS rpmI NC_009831.1 2570237 2570431 D KEGG: sfr:Sfri_2026 ribosomal protein L35; 50S ribosomal protein L35 2570237..2570431 Shewanella sediminis HAW-EB3 5610710 YP_001473860.1 CDS rplT NC_009831.1 2570450 2570809 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2570450..2570809 Shewanella sediminis HAW-EB3 5610711 YP_001473861.1 CDS Ssed_2124 NC_009831.1 2571083 2572033 R KEGG: slo:Shew_2028 thioredoxin reductase; thioredoxin reductase complement(2571083..2572033) Shewanella sediminis HAW-EB3 5610712 YP_001473862.1 CDS Ssed_2125 NC_009831.1 2572169 2573284 R KEGG: slo:Shew_2026 alanine dehydrogenase; alanine dehydrogenase complement(2572169..2573284) Shewanella sediminis HAW-EB3 5610658 YP_001473863.1 CDS Ssed_2126 NC_009831.1 2573465 2573968 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2573465..2573968 Shewanella sediminis HAW-EB3 5610659 YP_001473864.1 CDS Ssed_2127 NC_009831.1 2574152 2576665 D KEGG: slo:Shew_2024 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2574152..2576665 Shewanella sediminis HAW-EB3 5610660 YP_001473865.1 CDS Ssed_2128 NC_009831.1 2576780 2577406 D KEGG: slo:Shew_2023 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2576780..2577406 Shewanella sediminis HAW-EB3 5610661 YP_001473866.1 CDS Ssed_2129 NC_009831.1 2577416 2578747 D KEGG: slo:Shew_2022 AAA ATPase, central domain protein; recombination factor protein RarA 2577416..2578747 Shewanella sediminis HAW-EB3 5610574 YP_001473867.1 CDS Ssed_2130 NC_009831.1 2578740 2579114 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2578740..2579114 Shewanella sediminis HAW-EB3 5610575 YP_001473868.1 CDS Ssed_2131 NC_009831.1 2579133 2580419 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2579133..2580419 Shewanella sediminis HAW-EB3 5610576 YP_001473869.1 CDS Ssed_2132 NC_009831.1 2580854 2581189 R KEGG: slo:Shew_2018 DsrC family protein; DsrC family protein complement(2580854..2581189) Shewanella sediminis HAW-EB3 5610639 YP_001473870.1 CDS Ssed_2133 NC_009831.1 2581300 2581515 R KEGG: sbl:Sbal_2163 DsrH family protein; DsrH family protein complement(2581300..2581515) Shewanella sediminis HAW-EB3 5610640 YP_001473871.1 CDS Ssed_2134 NC_009831.1 2581581 2581961 R KEGG: sbl:Sbal_2164 DsrE family protein; DsrE family protein complement(2581581..2581961) Shewanella sediminis HAW-EB3 5610641 YP_001473872.1 CDS Ssed_2135 NC_009831.1 2582008 2582397 R KEGG: slo:Shew_2015 DsrE family protein; DsrE family protein complement(2582008..2582397) Shewanella sediminis HAW-EB3 5610642 YP_001473873.1 CDS Ssed_2136 NC_009831.1 2582563 2583222 R KEGG: sbl:Sbal_2166 protein of unknown function UPF0005; hypothetical protein complement(2582563..2583222) Shewanella sediminis HAW-EB3 5610564 YP_001473874.1 CDS Ssed_2137 NC_009831.1 2583472 2584374 R KEGG: slo:Shew_2013 transcriptional regulator, LysR family; DNA-binding transcriptional regulator complement(2583472..2584374) Shewanella sediminis HAW-EB3 5610565 YP_001473875.1 CDS Ssed_2138 NC_009831.1 2584412 2585752 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2584412..2585752 Shewanella sediminis HAW-EB3 5610566 YP_001473876.1 CDS Ssed_2139 NC_009831.1 2586794 2588008 R hypothetical protein complement(2586794..2588008) Shewanella sediminis HAW-EB3 5609988 YP_001473877.1 CDS Ssed_2140 NC_009831.1 2588337 2590211 R hypothetical protein complement(2588337..2590211) Shewanella sediminis HAW-EB3 5610550 YP_001473878.1 CDS Ssed_2141 NC_009831.1 2590323 2591156 D KEGG: son:SO4624 transcriptional regulator, LuxR family; hypothetical protein 2590323..2591156 Shewanella sediminis HAW-EB3 5610551 YP_001473879.1 CDS Ssed_2142 NC_009831.1 2591241 2592002 R KEGG: son:SO4624 transcriptional regulator, LuxR family; hypothetical protein complement(2591241..2592002) Shewanella sediminis HAW-EB3 5610552 YP_001473880.1 CDS Ssed_2143 NC_009831.1 2592192 2594090 R hypothetical protein complement(2592192..2594090) Shewanella sediminis HAW-EB3 5610553 YP_001473881.1 CDS Ssed_2144 NC_009831.1 2594437 2595198 R KEGG: spc:Sputcn32_3799 response regulator receiver protein; hypothetical protein complement(2594437..2595198) Shewanella sediminis HAW-EB3 5610533 YP_001473882.1 CDS Ssed_2145 NC_009831.1 2595356 2597311 R hypothetical protein complement(2595356..2597311) Shewanella sediminis HAW-EB3 5610534 YP_001473883.1 CDS Ssed_2146 NC_009831.1 2597657 2598550 R KEGG: afu:AF1397m spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (PotD); Fe3+-hydroxamate ABC transporter periplasmic component-like protein complement(2597657..2598550) Shewanella sediminis HAW-EB3 5610535 YP_001473884.1 CDS Ssed_2147 NC_009831.1 2598738 2599622 D KEGG: cps:CPS_1066 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 2598738..2599622 Shewanella sediminis HAW-EB3 5610529 YP_001473885.1 CDS Ssed_2148 NC_009831.1 2599619 2600602 D KEGG: cps:CPS_1067 ABC transporter, permease; ABC transporter permease 2599619..2600602 Shewanella sediminis HAW-EB3 5610530 YP_001473886.1 CDS Ssed_2149 NC_009831.1 2600895 2601809 D KEGG: sbl:Sbal_1588 cytochrome c family protein; cytochrome c family protein 2600895..2601809 Shewanella sediminis HAW-EB3 5610531 YP_001473887.1 CDS Ssed_2150 NC_009831.1 2601821 2603830 D KEGG: sfr:Sfri_3129 outer membrane protein; outer membrane protein 2601821..2603830 Shewanella sediminis HAW-EB3 5610532 YP_001473888.1 CDS Ssed_2151 NC_009831.1 2604163 2604561 D KEGG: vfi:VF1067 transporter; transporter 2604163..2604561 Shewanella sediminis HAW-EB3 5610423 YP_001473889.1 CDS Ssed_2152 NC_009831.1 2605004 2605909 D KEGG: cps:CPS_1768 hypothetical protein; hypothetical protein 2605004..2605909 Shewanella sediminis HAW-EB3 5610424 YP_001473890.1 CDS Ssed_2153 NC_009831.1 2606044 2607060 R KEGG: cte:CT0416 hypothetical protein; hypothetical protein complement(2606044..2607060) Shewanella sediminis HAW-EB3 5610425 YP_001473891.1 CDS Ssed_2154 NC_009831.1 2607087 2607671 R KEGG: vfi:VF1750 cob(I)yrinic acid a,c-diamide adenosyltransferase; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2607087..2607671) Shewanella sediminis HAW-EB3 5610426 YP_001473892.1 CDS Ssed_2155 NC_009831.1 2607668 2608444 R KEGG: slo:Shew_0715 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase complement(2607668..2608444) Shewanella sediminis HAW-EB3 5612019 YP_001473893.1 CDS Ssed_2156 NC_009831.1 2608441 2609805 R KEGG: bxe:Bxe_B1656 CobB; hypothetical protein complement(2608441..2609805) Shewanella sediminis HAW-EB3 5612020 YP_001473894.1 CDS Ssed_2157 NC_009831.1 2609805 2611262 R KEGG: vpa:VPA0932 cobyric acid synthase; cobyric acid synthase complement(2609805..2611262) Shewanella sediminis HAW-EB3 5612021 YP_001473895.1 CDS Ssed_2158 NC_009831.1 2611259 2612335 R KEGG: syn:sll1500 hypothetical protein; hypothetical protein complement(2611259..2612335) Shewanella sediminis HAW-EB3 5612022 YP_001473896.1 CDS Ssed_2159 NC_009831.1 2612336 2612977 R KEGG: ppr:PBPRB0994 hypothetical protein; hypothetical protein complement(2612336..2612977) Shewanella sediminis HAW-EB3 5609663 YP_001473897.1 CDS Ssed_2160 NC_009831.1 2612974 2613540 R KEGG: pen:PSEEN1384 cobinamide kinase; cobinamide phosphate guanylyltransferase CobU; cobinamide kinase; cobinamide phosphate guanylyltransferase CobU complement(2612974..2613540) Shewanella sediminis HAW-EB3 5609664 YP_001473898.1 CDS Ssed_2161 NC_009831.1 2613537 2614436 R KEGG: spc:Sputcn32_2947 periplasmic binding protein; periplasmic binding protein complement(2613537..2614436) Shewanella sediminis HAW-EB3 5609665 YP_001473899.1 CDS Ssed_2162 NC_009831.1 2614437 2614964 R KEGG: pfo:Pfl_1647 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein complement(2614437..2614964) Shewanella sediminis HAW-EB3 5610003 YP_001473900.1 CDS Ssed_2163 NC_009831.1 2614965 2615975 R KEGG: sdn:Sden_1117 transport system permease; transport system permease complement(2614965..2615975) Shewanella sediminis HAW-EB3 5610004 YP_001473901.1 CDS Ssed_2164 NC_009831.1 2615962 2616774 R KEGG: she:Shewmr4_0840 ABC transporter related; ABC transporter complement(2615962..2616774) Shewanella sediminis HAW-EB3 5610005 YP_001473902.1 CDS Ssed_2165 NC_009831.1 2616832 2618682 R KEGG: cps:CPS_1162 TonB-dependent vitamin B12 receptor; TonB-dependent vitamin B12 receptor complement(2616832..2618682) Shewanella sediminis HAW-EB3 5610006 YP_001473903.1 CDS Ssed_2166 NC_009831.1 2619453 2622635 R KEGG: slo:Shew_2011 acriflavin resistance protein; acriflavin resistance protein complement(2619453..2622635) Shewanella sediminis HAW-EB3 5610971 YP_001473904.1 CDS Ssed_2167 NC_009831.1 2622639 2623829 R KEGG: sfr:Sfri_1930 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2622639..2623829) Shewanella sediminis HAW-EB3 5610972 YP_001473905.1 CDS Ssed_2168 NC_009831.1 2624216 2625214 R KEGG: sfr:Sfri_3610 hypothetical protein; hypothetical protein complement(2624216..2625214) Shewanella sediminis HAW-EB3 5610973 YP_001473906.1 CDS Ssed_2169 NC_009831.1 2625656 2626030 D KEGG: pin:Ping_1384 hypothetical protein; hypothetical protein 2625656..2626030 Shewanella sediminis HAW-EB3 5610974 YP_001473907.1 CDS Ssed_2170 NC_009831.1 2626294 2626647 D KEGG: ilo:IL1221 nitrogen regulatory protein PII; nitrogen regulatory protein PII 2626294..2626647 Shewanella sediminis HAW-EB3 5610833 YP_001473908.1 CDS Ssed_2171 NC_009831.1 2626778 2628031 R KEGG: she:Shewmr4_3210 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(2626778..2628031) Shewanella sediminis HAW-EB3 5610834 YP_001473909.1 CDS Ssed_2172 NC_009831.1 2628167 2628592 R KEGG: vvu:VV1_0390 SOS-response transcriptional repressor LexA -like protein; SOS-response transcriptional repressor LexA -like protein complement(2628167..2628592) Shewanella sediminis HAW-EB3 5610835 YP_001473910.1 CDS Ssed_2173 NC_009831.1 2628767 2629687 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2628767..2629687 Shewanella sediminis HAW-EB3 5610836 YP_001473911.1 CDS Ssed_2174 NC_009831.1 2629931 2631697 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2629931..2631697 Shewanella sediminis HAW-EB3 5613940 YP_001473912.1 CDS Ssed_2175 NC_009831.1 2631694 2632689 D KEGG: pin:Ping_3601 pyruvate dehydrogenase (acetyl-transferring); pyruvate dehydrogenase (acetyl-transferring) 2631694..2632689 Shewanella sediminis HAW-EB3 5613941 YP_001473913.1 CDS Ssed_2176 NC_009831.1 2632686 2633669 D KEGG: pin:Ping_3602 pyruvate dehydrogenase complex, E1 beta2 component; Pyruvate dehydrogenase E1 component subunit beta 2632686..2633669 Shewanella sediminis HAW-EB3 5613942 YP_001473914.1 CDS Ssed_2177 NC_009831.1 2633705 2634838 D KEGG: gur:Gura_1611 catalytic domain of components of various dehydrogenase complexes; dehydrogenase catalytic domain-containing protein 2633705..2634838 Shewanella sediminis HAW-EB3 5613802 YP_001473915.1 CDS Ssed_2178 NC_009831.1 2634835 2635080 D KEGG: pin:Ping_3604 phosphopantetheine-binding protein; phosphopantetheine-binding protein 2634835..2635080 Shewanella sediminis HAW-EB3 5613803 YP_001473916.1 CDS Ssed_2179 NC_009831.1 2635321 2635761 D KEGG: cps:CPS_2622 universal stress protein family; universal stress protein 2635321..2635761 Shewanella sediminis HAW-EB3 5613804 YP_001473917.1 CDS Ssed_2180 NC_009831.1 2635886 2638309 R KEGG: slo:Shew_1976 ATP-dependent protease La-relatedprotein; ATP-dependent protease La-relatedprotein complement(2635886..2638309) Shewanella sediminis HAW-EB3 5613805 YP_001473918.1 CDS Ssed_2181 NC_009831.1 2638620 2639213 R KEGG: cps:CPS_0989 hypothetical protein; hypothetical protein complement(2638620..2639213) Shewanella sediminis HAW-EB3 5613377 YP_001473919.1 CDS Ssed_2182 NC_009831.1 2639520 2640437 D KEGG: slo:Shew_1977 diguanylate cyclase with PAS/PAC sensor; PAS/PAC sensor-containing diguanylate cyclase 2639520..2640437 Shewanella sediminis HAW-EB3 5613378 YP_001473920.1 CDS Ssed_2183 NC_009831.1 2640602 2641267 D KEGG: ppr:PBPRA1938 short-chain dehydrogenase; short-chain dehydrogenase 2640602..2641267 Shewanella sediminis HAW-EB3 5613379 YP_001473921.1 CDS Ssed_2184 NC_009831.1 2641354 2643117 R KEGG: shn:Shewana3_3690 cytochrome c; hypothetical protein complement(2641354..2643117) Shewanella sediminis HAW-EB3 5613380 YP_001473922.1 CDS Ssed_2185 NC_009831.1 2645827 2646009 R KEGG: cps:CPS_3943 hypothetical protein; hypothetical protein complement(2645827..2646009) Shewanella sediminis HAW-EB3 5613373 YP_001473923.1 CDS Ssed_2186 NC_009831.1 2646655 2647257 D KEGG: abo:ABO_1331 hydrolase; hydrolase 2646655..2647257 Shewanella sediminis HAW-EB3 5613374 YP_001473924.1 CDS Ssed_2187 NC_009831.1 2647605 2647919 R hypothetical protein complement(2647605..2647919) Shewanella sediminis HAW-EB3 5613375 YP_001473925.1 CDS Ssed_2188 NC_009831.1 2648346 2648759 R KEGG: slo:Shew_2598 hypothetical protein; hypothetical protein complement(2648346..2648759) Shewanella sediminis HAW-EB3 5613376 YP_001473926.1 CDS Ssed_2189 NC_009831.1 2648934 2649269 D KEGG: slo:Shew_2599 transcriptional regulator, HxlR family; HxlR family transcriptional regulator 2648934..2649269 Shewanella sediminis HAW-EB3 5613336 YP_001473927.1 CDS Ssed_2190 NC_009831.1 2650865 2651131 D hypothetical protein 2650865..2651131 Shewanella sediminis HAW-EB3 5613337 YP_001473928.1 CDS Ssed_2191 NC_009831.1 2651277 2651534 D KEGG: vvy:VVA0847 hypothetical protein; hypothetical protein 2651277..2651534 Shewanella sediminis HAW-EB3 5613338 YP_001473929.1 CDS Ssed_2192 NC_009831.1 2651696 2653519 D KEGG: ppr:PBPRB0950 hypothetical protein; hypothetical protein 2651696..2653519 Shewanella sediminis HAW-EB3 5613264 YP_001473930.1 CDS Ssed_2193 NC_009831.1 2654110 2654388 D hypothetical protein 2654110..2654388 Shewanella sediminis HAW-EB3 5613265 YP_001473931.1 CDS Ssed_2194 NC_009831.1 2654370 2654732 D hypothetical protein 2654370..2654732 Shewanella sediminis HAW-EB3 5613266 YP_001473932.1 CDS Ssed_2195 NC_009831.1 2654733 2655314 D hypothetical protein 2654733..2655314 Shewanella sediminis HAW-EB3 5613267 YP_001473933.1 CDS Ssed_2196 NC_009831.1 2655292 2655993 D KEGG: vpa:VPA0903 hypothetical protein; hypothetical protein 2655292..2655993 Shewanella sediminis HAW-EB3 5613207 YP_001473934.1 CDS Ssed_2197 NC_009831.1 2656343 2657161 D KEGG: mfa:Mfla_0971 hypothetical protein; hypothetical protein 2656343..2657161 Shewanella sediminis HAW-EB3 5613208 YP_001473935.1 CDS Ssed_2198 NC_009831.1 2657172 2657477 D hypothetical protein 2657172..2657477 Shewanella sediminis HAW-EB3 5613209 YP_001473936.1 CDS Ssed_2199 NC_009831.1 2657757 2658122 D hypothetical protein 2657757..2658122 Shewanella sediminis HAW-EB3 5613210 YP_001473937.1 CDS Ssed_2200 NC_009831.1 2658122 2658913 D hypothetical protein 2658122..2658913 Shewanella sediminis HAW-EB3 5613167 YP_001473938.1 CDS Ssed_2201 NC_009831.1 2658910 2660418 D hypothetical protein 2658910..2660418 Shewanella sediminis HAW-EB3 5613168 YP_001473939.1 CDS Ssed_2202 NC_009831.1 2660418 2661041 D KEGG: aav:Aave_2357 hypothetical protein; hypothetical protein 2660418..2661041 Shewanella sediminis HAW-EB3 5613169 YP_001473940.1 CDS Ssed_2203 NC_009831.1 2661016 2661372 D KEGG: vvu:VV2_0287 hypothetical protein; hypothetical protein 2661016..2661372 Shewanella sediminis HAW-EB3 5613170 YP_001473941.1 CDS Ssed_2204 NC_009831.1 2661416 2661742 D hypothetical protein 2661416..2661742 Shewanella sediminis HAW-EB3 5613075 YP_001473942.1 CDS Ssed_2205 NC_009831.1 2662296 2662955 D KEGG: sty:STY3192 hypothetical protein; hypothetical protein 2662296..2662955 Shewanella sediminis HAW-EB3 5613076 YP_001473943.1 CDS Ssed_2206 NC_009831.1 2663053 2663538 R hypothetical protein complement(2663053..2663538) Shewanella sediminis HAW-EB3 5613077 YP_001473944.1 CDS Ssed_2207 NC_009831.1 2664796 2666088 R KEGG: she:Shewmr4_2002 phage integrase family protein; phage integrase family protein complement(2664796..2666088) Shewanella sediminis HAW-EB3 5613144 YP_001473945.1 CDS Ssed_2208 NC_009831.1 2666280 2666567 R KEGG: shm:Shewmr7_1972 hypothetical protein; hypothetical protein complement(2666280..2666567) Shewanella sediminis HAW-EB3 5613145 YP_001473946.1 CDS Ssed_2209 NC_009831.1 2666770 2668350 D KEGG: slo:Shew_1983 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 2666770..2668350 Shewanella sediminis HAW-EB3 5613146 YP_001473947.1 CDS Ssed_2210 NC_009831.1 2668465 2668890 R KEGG: shn:Shewana3_2106 hypothetical protein; hypothetical protein complement(2668465..2668890) Shewanella sediminis HAW-EB3 5613147 YP_001473948.1 CDS Ssed_2211 NC_009831.1 2669201 2670628 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2669201..2670628 Shewanella sediminis HAW-EB3 5613120 YP_001473949.1 CDS Ssed_2212 NC_009831.1 2670641 2671267 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2670641..2671267 Shewanella sediminis HAW-EB3 5613121 YP_001473950.1 CDS Ssed_2213 NC_009831.1 2671283 2671450 D KEGG: slo:Shew_1987 Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2671283..2671450 Shewanella sediminis HAW-EB3 5613122 YP_001473951.1 CDS Ssed_2214 NC_009831.1 2671450 2672418 D KEGG: slo:Shew_1988 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2671450..2672418 Shewanella sediminis HAW-EB3 5613123 YP_001473952.1 CDS Ssed_2215 NC_009831.1 2672529 2673008 D KEGG: slo:Shew_1989 hypothetical protein; hypothetical protein 2672529..2673008 Shewanella sediminis HAW-EB3 5612872 YP_001473953.1 CDS Ssed_2216 NC_009831.1 2673026 2675404 D KEGG: slo:Shew_1990 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2673026..2675404 Shewanella sediminis HAW-EB3 5612873 YP_001473954.1 CDS Ssed_2217 NC_009831.1 2675401 2675586 D KEGG: slo:Shew_1991 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2675401..2675586 Shewanella sediminis HAW-EB3 5612874 YP_001473955.1 CDS Ssed_2218 NC_009831.1 2675583 2676275 D KEGG: slo:Shew_1992 hypothetical protein; hypothetical protein 2675583..2676275 Shewanella sediminis HAW-EB3 5612875 YP_001473956.1 CDS Ssed_2219 NC_009831.1 2676331 2677080 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2676331..2677080 Shewanella sediminis HAW-EB3 5612762 YP_001473957.1 CDS Ssed_2220 NC_009831.1 2677419 2678351 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2677419..2678351 Shewanella sediminis HAW-EB3 5612763 YP_001473958.1 CDS Ssed_2221 NC_009831.1 2678431 2679381 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2678431..2679381 Shewanella sediminis HAW-EB3 5612764 YP_001473959.1 CDS Ssed_2222 NC_009831.1 2679494 2680120 R KEGG: slo:Shew_1996 hypothetical protein; hypothetical protein complement(2679494..2680120) Shewanella sediminis HAW-EB3 5612631 YP_001473960.1 CDS Ssed_2223 NC_009831.1 2680098 2680925 R KEGG: slo:Shew_1997 Bax protein; Bax protein complement(2680098..2680925) Shewanella sediminis HAW-EB3 5612632 YP_001473961.1 CDS Ssed_2224 NC_009831.1 2681062 2681961 D KEGG: slo:Shew_1998 protein of unknown function UPF0052 and CofD; hypothetical protein 2681062..2681961 Shewanella sediminis HAW-EB3 5612633 YP_001473962.1 CDS Ssed_2225 NC_009831.1 2682061 2683257 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2682061..2683257) Shewanella sediminis HAW-EB3 5612634 YP_001473963.1 CDS Ssed_2226 NC_009831.1 2685384 2686823 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase complement(2685384..2686823) Shewanella sediminis HAW-EB3 5610089 YP_001473964.1 CDS Ssed_2227 NC_009831.1 2687047 2687877 D KEGG: slo:Shew_2001 hypothetical protein; hypothetical protein 2687047..2687877 Shewanella sediminis HAW-EB3 5612590 YP_001473965.1 CDS Ssed_2228 NC_009831.1 2688299 2689309 D KEGG: slo:Shew_2002 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 2688299..2689309 Shewanella sediminis HAW-EB3 5612591 YP_001473966.1 CDS Ssed_2229 NC_009831.1 2689445 2690848 R KEGG: asa:ASA_4003 GGDEF domain protein; diguanylate cyclase complement(2689445..2690848) Shewanella sediminis HAW-EB3 5612592 YP_001473967.1 CDS Ssed_2230 NC_009831.1 2691243 2691713 D KEGG: sfr:Sfri_0957 bacterioferritin; bacterioferritin 2691243..2691713 Shewanella sediminis HAW-EB3 5612363 YP_001473968.1 CDS Ssed_2231 NC_009831.1 2691715 2692197 D KEGG: slo:Shew_2872 bacterioferritin; bacterioferritin 2691715..2692197 Shewanella sediminis HAW-EB3 5612364 YP_001473969.1 CDS Ssed_2232 NC_009831.1 2692328 2692717 R KEGG: pnu:Pnuc_1464 hypothetical protein; hypothetical protein complement(2692328..2692717) Shewanella sediminis HAW-EB3 5612365 YP_001473970.1 CDS Ssed_2233 NC_009831.1 2692972 2693247 R KEGG: slo:Shew_2004 hypothetical protein; hypothetical protein complement(2692972..2693247) Shewanella sediminis HAW-EB3 5612366 YP_001473971.1 CDS Ssed_2234 NC_009831.1 2693425 2694558 D KEGG: sit:TM1040_3572 spermidine/putrescine-binding periplasmic protein-like; spermidine/putrescine-binding periplasmic protein-like protein 2693425..2694558 Shewanella sediminis HAW-EB3 5612389 YP_001473972.1 CDS Ssed_2235 NC_009831.1 2694574 2695917 R KEGG: sfr:Sfri_0489 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2694574..2695917) Shewanella sediminis HAW-EB3 5612390 YP_001473973.1 CDS Ssed_2236 NC_009831.1 2695933 2696484 R KEGG: slo:Shew_2006 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2695933..2696484) Shewanella sediminis HAW-EB3 5612391 YP_001473974.1 CDS Ssed_2237 NC_009831.1 2696691 2698388 D KEGG: sus:Acid_1539 MutT/NUDIX family protein; MutT/NUDIX family protein 2696691..2698388 Shewanella sediminis HAW-EB3 5612221 YP_001473975.1 CDS Ssed_2238 NC_009831.1 2698600 2699658 D KEGG: slo:Shew_2007 hypothetical protein; hypothetical protein 2698600..2699658 Shewanella sediminis HAW-EB3 5612222 YP_001473976.1 CDS Ssed_2239 NC_009831.1 2699729 2700424 R KEGG: vfi:VF1658 short chain dehydrogenase; short chain dehydrogenase complement(2699729..2700424) Shewanella sediminis HAW-EB3 5612223 YP_001473977.1 CDS Ssed_2240 NC_009831.1 2700473 2700877 R KEGG: pat:Patl_3326 orphan protein; hypothetical protein complement(2700473..2700877) Shewanella sediminis HAW-EB3 5612224 YP_001473978.1 CDS Ssed_2241 NC_009831.1 2701332 2702381 D KEGG: dre:797003 hypothetical protein LOC797003; hypothetical protein 2701332..2702381 Shewanella sediminis HAW-EB3 5612287 YP_001473979.1 CDS Ssed_2242 NC_009831.1 2702898 2703872 D KEGG: aha:AHA_1230 ABC-type sugar transport system, ATPase component; sugar ABC transporter ATPase 2702898..2703872 Shewanella sediminis HAW-EB3 5612288 YP_001473980.1 CDS Ssed_2243 NC_009831.1 2703964 2704488 R KEGG: sbl:Sbal_2095 hypothetical protein; hypothetical protein complement(2703964..2704488) Shewanella sediminis HAW-EB3 5612289 YP_001473981.1 CDS Ssed_2244 NC_009831.1 2705314 2706456 D KEGG: shm:Shewmr7_2033 phage integrase family protein; phage integrase family protein 2705314..2706456 Shewanella sediminis HAW-EB3 5612290 YP_001473982.1 CDS Ssed_2245 NC_009831.1 2706535 2708325 R KEGG: swi:Swit_2059 amidohydrolase 3; amidohydrolase 3 complement(2706535..2708325) Shewanella sediminis HAW-EB3 5612090 YP_001473983.1 CDS Ssed_2246 NC_009831.1 2708472 2709518 R KEGG: swi:Swit_4355 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2708472..2709518) Shewanella sediminis HAW-EB3 5612091 YP_001473984.1 CDS Ssed_2247 NC_009831.1 2709554 2710786 R KEGG: msm:MSMEG_0277 aminotransferase; aminotransferase complement(2709554..2710786) Shewanella sediminis HAW-EB3 5612092 YP_001473985.1 CDS Ssed_2248 NC_009831.1 2710844 2713177 R KEGG: swi:Swit_4129 TonB-dependent receptor; TonB-dependent receptor complement(2710844..2713177) Shewanella sediminis HAW-EB3 5612093 YP_001473986.1 CDS Ssed_2249 NC_009831.1 2713427 2714071 D KEGG: swi:Swit_3257 transcriptional regulator, TetR family; TetR family transcriptional regulator 2713427..2714071 Shewanella sediminis HAW-EB3 5611954 YP_001473987.1 CDS Ssed_2250 NC_009831.1 2714213 2714929 R KEGG: sfr:Sfri_3001 pseudouridine synthase; pseudouridine synthase complement(2714213..2714929) Shewanella sediminis HAW-EB3 5611955 YP_001473988.1 CDS Ssed_2251 NC_009831.1 2715165 2715548 D hypothetical protein 2715165..2715548 Shewanella sediminis HAW-EB3 5611956 YP_001473989.1 CDS Ssed_2252 NC_009831.1 2715661 2716023 R KEGG: rfr:Rfer_2228 globin; globin complement(2715661..2716023) Shewanella sediminis HAW-EB3 5611892 YP_001473990.1 CDS Ssed_2253 NC_009831.1 2716270 2717502 R KEGG: pnu:Pnuc_1086 patatin; patatin complement(2716270..2717502) Shewanella sediminis HAW-EB3 5611893 YP_001473991.1 CDS Ssed_2254 NC_009831.1 2718274 2719542 D KEGG: cps:CPS_1325 sensory box/GGDEF domain protein; sensory box protein 2718274..2719542 Shewanella sediminis HAW-EB3 5611894 YP_001473992.1 CDS Ssed_2255 NC_009831.1 2719824 2722886 R KEGG: sbl:Sbal_3941 UvrD/REP helicase; UvrD/REP helicase complement(2719824..2722886) Shewanella sediminis HAW-EB3 5611895 YP_001473993.1 CDS Ssed_2256 NC_009831.1 2723406 2724185 R KEGG: sfv:SFV_0855 regulator; negative regulator of beta-lactamase expression-like protein complement(2723406..2724185) Shewanella sediminis HAW-EB3 5611863 YP_001473994.1 CDS Ssed_2257 NC_009831.1 2724481 2725734 R KEGG: pmy:Pmen_1267 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2724481..2725734) Shewanella sediminis HAW-EB3 5611864 YP_001473995.1 CDS Ssed_2258 NC_009831.1 2726434 2727324 R KEGG: vfi:VF1063 transcriptional regulator; transcriptional regulator complement(2726434..2727324) Shewanella sediminis HAW-EB3 5611865 YP_001473996.1 CDS Ssed_2259 NC_009831.1 2727459 2728715 D KEGG: vfi:VF1062 adenylosuccinate synthetase; adenylosuccinate synthetase 2727459..2728715 Shewanella sediminis HAW-EB3 5611866 YP_001473997.1 CDS Ssed_2260 NC_009831.1 2729564 2730622 R KEGG: sde:Sde_2820 hypothetical protein; iron-regulated membrane protein-like protein complement(2729564..2730622) Shewanella sediminis HAW-EB3 5611896 YP_001473998.1 CDS Ssed_2261 NC_009831.1 2731877 2732692 D KEGG: hch:HCH_00100 predicted sulfurtransferase; sulfurtransferase 2731877..2732692 Shewanella sediminis HAW-EB3 5611897 YP_001473999.1 CDS Ssed_2262 NC_009831.1 2732878 2734032 D KEGG: ppr:PBPRB1412 hypothetical glucose dehydrogenase; glucose dehydrogenase 2732878..2734032 Shewanella sediminis HAW-EB3 5611898 YP_001474000.1 CDS Ssed_2263 NC_009831.1 2734272 2735948 R KEGG: sfr:Sfri_1606 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(2734272..2735948) Shewanella sediminis HAW-EB3 5611899 YP_001474001.1 CDS Ssed_2264 NC_009831.1 2736662 2737786 R KEGG: sbl:Sbal_2120 HNH nuclease; HNH nuclease complement(2736662..2737786) Shewanella sediminis HAW-EB3 5611813 YP_001474002.1 CDS Ssed_2265 NC_009831.1 2737783 2738469 R KEGG: sbl:Sbal_2119 methyltransferase type 12; type 12 methyltransferase complement(2737783..2738469) Shewanella sediminis HAW-EB3 5611814 YP_001474003.1 CDS Ssed_2266 NC_009831.1 2738810 2740591 R KEGG: rpa:RPA1904 DUF262; hypothetical protein complement(2738810..2740591) Shewanella sediminis HAW-EB3 5611815 YP_001474004.1 CDS Ssed_2267 NC_009831.1 2740758 2741033 R KEGG: spc:Sputcn32_2923 hypothetical protein; hypothetical protein complement(2740758..2741033) Shewanella sediminis HAW-EB3 5611776 YP_001474005.1 CDS Ssed_2268 NC_009831.1 2741100 2742089 R KEGG: pin:Ping_2477 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 complement(2741100..2742089) Shewanella sediminis HAW-EB3 5611777 YP_001474006.1 CDS Ssed_2269 NC_009831.1 2742314 2742775 R hypothetical protein complement(2742314..2742775) Shewanella sediminis HAW-EB3 5611778 YP_001474007.1 CDS Ssed_2270 NC_009831.1 2742765 2744129 R KEGG: shn:Shewana3_1831 hypothetical protein; hypothetical protein complement(2742765..2744129) Shewanella sediminis HAW-EB3 5611779 YP_001474008.1 CDS Ssed_2271 NC_009831.1 2744155 2744553 R hypothetical protein complement(2744155..2744553) Shewanella sediminis HAW-EB3 5611651 YP_001474009.1 CDS Ssed_2272 NC_009831.1 2744788 2745567 R KEGG: ppr:PBPRA1449 conserved hypothetical protein; hypothetical protein complement(2744788..2745567) Shewanella sediminis HAW-EB3 5611652 YP_001474010.1 CDS Ssed_2273 NC_009831.1 2745709 2749302 R KEGG: ppr:PBPRA1988 pyruvate oxidoreductase; pyruvate oxidoreductase complement(2745709..2749302) Shewanella sediminis HAW-EB3 5611653 YP_001474011.1 CDS Ssed_2274 NC_009831.1 2749344 2750972 R unknown function; glutamate synthase (NADPH) small subunit complement(2749344..2750972) Shewanella sediminis HAW-EB3 5611654 YP_001474012.1 CDS Ssed_2275 NC_009831.1 2751280 2752308 R KEGG: she:Shewmr4_2086 hypothetical protein; hypothetical protein complement(2751280..2752308) Shewanella sediminis HAW-EB3 5611749 YP_001474013.1 CDS Ssed_2276 NC_009831.1 2752889 2753632 D KEGG: sfr:Sfri_0271 hypothetical protein; hypothetical protein 2752889..2753632 Shewanella sediminis HAW-EB3 5611750 YP_001474014.1 CDS Ssed_2277 NC_009831.1 2753629 2755548 D KEGG: ilo:IL1226 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrF 2753629..2755548 Shewanella sediminis HAW-EB3 5611751 YP_001474015.1 CDS Ssed_2278 NC_009831.1 2755703 2756743 R KEGG: slo:Shew_1973 porin, gram-negative type; porin complement(2755703..2756743) Shewanella sediminis HAW-EB3 5611752 YP_001474016.1 CDS Ssed_2279 NC_009831.1 2756824 2758170 R KEGG: slo:Shew_1972 FMN-binding domain protein; FMN-binding domain-containing protein complement(2756824..2758170) Shewanella sediminis HAW-EB3 5611575 YP_001474017.1 CDS Ssed_2280 NC_009831.1 2758517 2759635 D KEGG: slo:Shew_1971 ApbE family lipoprotein; ApbE family lipoprotein 2758517..2759635 Shewanella sediminis HAW-EB3 5611576 YP_001474018.1 CDS Ssed_2281 NC_009831.1 2760044 2761720 D KEGG: slo:Shew_1970 histidine kinase; histidine kinase 2760044..2761720 Shewanella sediminis HAW-EB3 5611577 YP_001474019.1 CDS Ssed_2282 NC_009831.1 2761713 2762312 D KEGG: slo:Shew_1969 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2761713..2762312 Shewanella sediminis HAW-EB3 5611511 YP_001474020.1 CDS Ssed_2283 NC_009831.1 2762917 2764422 R KEGG: shn:Shewana3_1994 outer membrane efflux protein; outer membrane efflux protein complement(2762917..2764422) Shewanella sediminis HAW-EB3 5611512 YP_001474021.1 CDS Ssed_2284 NC_009831.1 2764422 2767589 R KEGG: shn:Shewana3_1993 acriflavin resistance protein; acriflavin resistance protein complement(2764422..2767589) Shewanella sediminis HAW-EB3 5611513 YP_001474022.1 CDS Ssed_2285 NC_009831.1 2767589 2768875 R KEGG: she:Shewmr4_1939 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2767589..2768875) Shewanella sediminis HAW-EB3 5611514 YP_001474023.1 CDS Ssed_2286 NC_009831.1 2769241 2769984 R KEGG: slo:Shew_1966 DTW domain containing protein; DTW domain-containing protein complement(2769241..2769984) Shewanella sediminis HAW-EB3 5611493 YP_001474024.1 CDS emrD NC_009831.1 2770648 2771874 D multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 2770648..2771874 Shewanella sediminis HAW-EB3 5611494 YP_001474025.1 CDS pssA NC_009831.1 2772391 2773704 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(2772391..2773704) Shewanella sediminis HAW-EB3 5611495 YP_001474026.1 CDS Ssed_2289 NC_009831.1 2773716 2774048 R KEGG: sbl:Sbal_2080 hypothetical protein; hypothetical protein complement(2773716..2774048) Shewanella sediminis HAW-EB3 5611496 YP_001474027.1 CDS Ssed_2290 NC_009831.1 2774408 2774581 D KEGG: shn:Shewana3_1986 hypothetical protein; hypothetical protein 2774408..2774581 Shewanella sediminis HAW-EB3 5611476 YP_001474028.1 CDS Ssed_2291 NC_009831.1 2774783 2776240 D KEGG: spc:Sputcn32_2034 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2774783..2776240 Shewanella sediminis HAW-EB3 5611477 YP_001474029.1 CDS Ssed_2292 NC_009831.1 2776424 2778181 R KEGG: slo:Shew_1961 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(2776424..2778181) Shewanella sediminis HAW-EB3 5611478 YP_001474030.1 CDS Ssed_2293 NC_009831.1 2778421 2778963 R KEGG: slo:Shew_1960 hypothetical protein; hypothetical protein complement(2778421..2778963) Shewanella sediminis HAW-EB3 5611479 YP_001474031.1 CDS Ssed_2294 NC_009831.1 2779074 2779778 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(2779074..2779778) Shewanella sediminis HAW-EB3 5611043 YP_001474032.1 CDS Ssed_2295 NC_009831.1 2779883 2781043 R KEGG: slo:Shew_1957 hypothetical protein; hypothetical protein complement(2779883..2781043) Shewanella sediminis HAW-EB3 5611044 YP_001474033.1 CDS Ssed_2296 NC_009831.1 2781045 2781335 R KEGG: slo:Shew_1956 protein of unknown function DUF1049; hypothetical protein complement(2781045..2781335) Shewanella sediminis HAW-EB3 5611045 YP_001474034.1 CDS ihfB NC_009831.1 2781458 2781745 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(2781458..2781745) Shewanella sediminis HAW-EB3 5611063 YP_001474035.1 CDS rpsA NC_009831.1 2781817 2783484 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2781817..2783484) Shewanella sediminis HAW-EB3 5611064 YP_001474036.1 CDS cmk NC_009831.1 2783587 2784279 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2783587..2784279) Shewanella sediminis HAW-EB3 5611065 YP_001474037.1 CDS Ssed_2300 NC_009831.1 2784568 2785848 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2784568..2785848) Shewanella sediminis HAW-EB3 5611066 YP_001474038.1 CDS Ssed_2301 NC_009831.1 2786298 2787503 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2786298..2787503 Shewanella sediminis HAW-EB3 5611113 YP_001474039.1 CDS Ssed_2302 NC_009831.1 2787554 2788648 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(2787554..2788648) Shewanella sediminis HAW-EB3 5611114 YP_001474040.1 CDS Ssed_2303 NC_009831.1 2788824 2791538 R KEGG: shw:Sputw3181_1942 DNA gyrase, A subunit; DNA topoisomerase complement(2788824..2791538) Shewanella sediminis HAW-EB3 5611115 YP_001474041.1 CDS Ssed_2304 NC_009831.1 2791824 2792549 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2791824..2792549 Shewanella sediminis HAW-EB3 5611116 YP_001474042.1 CDS Ssed_2305 NC_009831.1 2792550 2793254 D KEGG: she:Shewmr4_1917 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 2792550..2793254 Shewanella sediminis HAW-EB3 5613472 YP_001474043.1 CDS Ssed_2306 NC_009831.1 2793669 2795957 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2793669..2795957 Shewanella sediminis HAW-EB3 5613473 YP_001474044.1 CDS nrdB NC_009831.1 2796104 2797234 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2796104..2797234 Shewanella sediminis HAW-EB3 5613474 YP_001474045.1 CDS Ssed_2308 NC_009831.1 2797218 2797568 D KEGG: slo:Shew_1944 ferredoxin; ferredoxin 2797218..2797568 Shewanella sediminis HAW-EB3 5613475 YP_001474046.1 CDS Ssed_2309 NC_009831.1 2797887 2799530 D KEGG: aha:AHA_3197 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein-like protein 2797887..2799530 Shewanella sediminis HAW-EB3 5612068 YP_001474047.1 CDS Ssed_2310 NC_009831.1 2799628 2801643 R KEGG: she:Shewmr4_1910 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(2799628..2801643) Shewanella sediminis HAW-EB3 5612069 YP_001474048.1 CDS Ssed_2311 NC_009831.1 2801807 2803645 D KEGG: slo:Shew_1941 signal peptide peptidase SppA, 67K type; acid phosphatase 2801807..2803645 Shewanella sediminis HAW-EB3 5612070 YP_001474049.1 CDS ansA NC_009831.1 2803811 2804824 D converts asparagine to aspartate and ammonia; asparaginase 2803811..2804824 Shewanella sediminis HAW-EB3 5611121 YP_001474050.1 CDS Ssed_2313 NC_009831.1 2804996 2805277 R KEGG: slo:Shew_1939 protein of unknown function DUF1315; hypothetical protein complement(2804996..2805277) Shewanella sediminis HAW-EB3 5611122 YP_001474051.1 CDS Ssed_2314 NC_009831.1 2805274 2805591 R KEGG: slo:Shew_1938 hypothetical protein; hypothetical protein complement(2805274..2805591) Shewanella sediminis HAW-EB3 5611123 YP_001474052.1 CDS Ssed_2315 NC_009831.1 2805664 2806791 R KEGG: slo:Shew_1937 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A complement(2805664..2806791) Shewanella sediminis HAW-EB3 5611124 YP_001474053.1 CDS Ssed_2316 NC_009831.1 2807019 2807699 R KEGG: saz:Sama_1718 response regulator receiver protein; response regulator receiver protein complement(2807019..2807699) Shewanella sediminis HAW-EB3 5610962 YP_001474054.1 CDS Ssed_2317 NC_009831.1 2807920 2809698 R KEGG: slo:Shew_1935 protein of unknown function DUF885; hypothetical protein complement(2807920..2809698) Shewanella sediminis HAW-EB3 5610963 YP_001474055.1 CDS Ssed_2318 NC_009831.1 2809881 2811827 R KEGG: pin:Ping_3396 23S rRNA (Gm2251)-methyltransferase; 23S rRNA Gm2251-methyltransferase complement(2809881..2811827) Shewanella sediminis HAW-EB3 5610964 YP_001474056.1 CDS Ssed_2319 NC_009831.1 2812011 2812865 R KEGG: slo:Shew_1933 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(2812011..2812865) Shewanella sediminis HAW-EB3 5610965 YP_001474057.1 CDS cls NC_009831.1 2813076 2814548 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 2813076..2814548 Shewanella sediminis HAW-EB3 5611223 YP_001474058.1 CDS Ssed_2321 NC_009831.1 2815228 2817111 D KEGG: pin:Ping_0967 nucleotidyltransferase; nucleotidyltransferase 2815228..2817111 Shewanella sediminis HAW-EB3 5609670 YP_001474059.1 CDS Ssed_2322 NC_009831.1 2817115 2817831 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 2817115..2817831 Shewanella sediminis HAW-EB3 5611225 YP_001474060.1 CDS Ssed_2323 NC_009831.1 2817938 2819515 R KEGG: vfi:VF2515 glycine betaine transporter; glycine betaine transporter complement(2817938..2819515) Shewanella sediminis HAW-EB3 5611226 YP_001474061.1 CDS Ssed_2324 NC_009831.1 2819755 2820735 R KEGG: tpt:Tpet_0284 NAD+ synthetase; NAD+ synthetase complement(2819755..2820735) Shewanella sediminis HAW-EB3 5611168 YP_001474062.1 CDS Ssed_2325 NC_009831.1 2821094 2823088 R KEGG: slo:Shew_1929 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2821094..2823088) Shewanella sediminis HAW-EB3 5611169 YP_001474063.1 CDS Ssed_2326 NC_009831.1 2823258 2824325 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2823258..2824325) Shewanella sediminis HAW-EB3 5611170 YP_001474064.1 CDS Ssed_2327 NC_009831.1 2824454 2826088 R KEGG: sfr:Sfri_1937 catalytic domain of components of various dehydrogenase complexes; dihydrolipoamide acetyltransferase complement(2824454..2826088) Shewanella sediminis HAW-EB3 5611256 YP_001474065.1 CDS Ssed_2328 NC_009831.1 2826099 2827076 R KEGG: slo:Shew_1926 transketolase, central region; transketolase, central region complement(2826099..2827076) Shewanella sediminis HAW-EB3 5611257 YP_001474066.1 CDS Ssed_2329 NC_009831.1 2827080 2828258 R KEGG: slo:Shew_1925 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); 3-methyl-2-oxobutanoate dehydrogenase complement(2827080..2828258) Shewanella sediminis HAW-EB3 5611258 YP_001474067.1 CDS Ssed_2330 NC_009831.1 2828478 2829521 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2828478..2829521) Shewanella sediminis HAW-EB3 5611259 YP_001474068.1 CDS Ssed_2331 NC_009831.1 2829819 2830298 D KEGG: slo:Shew_1923 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 2829819..2830298 Shewanella sediminis HAW-EB3 5614130 YP_001474069.1 CDS Ssed_2332 NC_009831.1 2830647 2832302 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2830647..2832302) Shewanella sediminis HAW-EB3 5614131 YP_001474070.1 CDS Ssed_2333 NC_009831.1 2832381 2832923 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(2832381..2832923) Shewanella sediminis HAW-EB3 5614132 YP_001474071.1 CDS Ssed_2334 NC_009831.1 2833215 2833991 D KEGG: shw:Sputw3181_2128 alpha/beta hydrolase fold; alpha/beta hydrolase 2833215..2833991 Shewanella sediminis HAW-EB3 5614133 YP_001474072.1 CDS Ssed_2335 NC_009831.1 2834064 2834285 D KEGG: son:SO2332 hypothetical protein; hypothetical protein 2834064..2834285 Shewanella sediminis HAW-EB3 5613851 YP_001474073.1 CDS Ssed_2336 NC_009831.1 2834297 2834572 D KEGG: slo:Shew_1918 CopG domain protein DNA-binding domain protein; LexA regulated protein 2834297..2834572 Shewanella sediminis HAW-EB3 5613852 YP_001474074.1 CDS Ssed_2337 NC_009831.1 2834621 2835151 D KEGG: slo:Shew_1917 flavodoxin; flavodoxin 2834621..2835151 Shewanella sediminis HAW-EB3 5613853 YP_001474075.1 CDS Ssed_2338 NC_009831.1 2835236 2836414 D KEGG: sbl:Sbal_4517 hypothetical protein; hypothetical protein 2835236..2836414 Shewanella sediminis HAW-EB3 5613854 YP_001474076.1 CDS Ssed_2339 NC_009831.1 2836460 2837020 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2836460..2837020 Shewanella sediminis HAW-EB3 5614071 YP_001474077.1 CDS Ssed_2340 NC_009831.1 2837310 2838524 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 2837310..2838524 Shewanella sediminis HAW-EB3 5614072 YP_001474078.1 CDS Ssed_2341 NC_009831.1 2838578 2839630 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(2838578..2839630) Shewanella sediminis HAW-EB3 5614073 YP_001474079.1 CDS Ssed_2342 NC_009831.1 2839803 2848241 R KEGG: slo:Shew_0313 outer membrane adhesin like proteiin; outer membrane adhesin-like protein complement(2839803..2848241) Shewanella sediminis HAW-EB3 5610356 YP_001474080.1 CDS Ssed_2343 NC_009831.1 2848787 2850820 R KEGG: slo:Shew_2294 hypothetical protein; hypothetical protein complement(2848787..2850820) Shewanella sediminis HAW-EB3 5610357 YP_001474081.1 CDS Ssed_2344 NC_009831.1 2851080 2851955 R KEGG: slo:Shew_2295 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2851080..2851955) Shewanella sediminis HAW-EB3 5610358 YP_001474082.1 CDS Ssed_2345 NC_009831.1 2852145 2852732 D KEGG: slo:Shew_1913 metal dependent phosphohydrolase; hypothetical protein 2852145..2852732 Shewanella sediminis HAW-EB3 5610359 YP_001474083.1 CDS Ssed_2346 NC_009831.1 2852754 2854088 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2852754..2854088 Shewanella sediminis HAW-EB3 5611325 YP_001474084.1 CDS Ssed_2347 NC_009831.1 2854158 2854847 R KEGG: mac:MA3655 UbiE/COQ5 methyltransferase; UbiE/COQ5 methyltransferase complement(2854158..2854847) Shewanella sediminis HAW-EB3 5611326 YP_001474085.1 CDS Ssed_2348 NC_009831.1 2855422 2856054 R KEGG: slo:Shew_1911 multiple antibiotic resistance (MarC)-related protein; hypothetical protein complement(2855422..2856054) Shewanella sediminis HAW-EB3 5611327 YP_001474086.1 CDS Ssed_2349 NC_009831.1 2856379 2858979 D KEGG: sfr:Sfri_1898 iron-containing alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2856379..2858979 Shewanella sediminis HAW-EB3 5611328 YP_001474087.1 CDS Ssed_2350 NC_009831.1 2859074 2859868 R KEGG: hypothetical protein; hypothetical protein complement(2859074..2859868) Shewanella sediminis HAW-EB3 5611362 YP_001474088.1 CDS Ssed_2351 NC_009831.1 2860134 2862308 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(2860134..2862308) Shewanella sediminis HAW-EB3 5611363 YP_001474089.1 CDS Ssed_2352 NC_009831.1 2862534 2863478 R KEGG: sfr:Sfri_3138 transcriptional regulator, LysR family protein; LysR family transcriptional regulator complement(2862534..2863478) Shewanella sediminis HAW-EB3 5611364 YP_001474090.1 CDS Ssed_2353 NC_009831.1 2863595 2865178 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 2863595..2865178 Shewanella sediminis HAW-EB3 5611365 YP_001474091.1 CDS Ssed_2354 NC_009831.1 2865282 2865956 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(2865282..2865956) Shewanella sediminis HAW-EB3 5610613 YP_001474092.1 CDS Ssed_2355 NC_009831.1 2866172 2866723 R KEGG: mac:MA2053 hypothetical protein; hypothetical protein complement(2866172..2866723) Shewanella sediminis HAW-EB3 5610614 YP_001474093.1 CDS Ssed_2356 NC_009831.1 2866720 2868048 R KEGG: ter:Tery_1595 hypothetical protein; hypothetical protein complement(2866720..2868048) Shewanella sediminis HAW-EB3 5610615 YP_001474094.1 CDS Ssed_2357 NC_009831.1 2868219 2870273 R KEGG: slo:Shew_1905 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(2868219..2870273) Shewanella sediminis HAW-EB3 5612968 YP_001474095.1 CDS Ssed_2358 NC_009831.1 2870484 2872022 R KEGG: slo:Shew_1904 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(2870484..2872022) Shewanella sediminis HAW-EB3 5612969 YP_001474096.1 CDS Ssed_2359 NC_009831.1 2872233 2873642 D KEGG: shw:Sputw3181_2219 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I 2872233..2873642 Shewanella sediminis HAW-EB3 5612970 YP_001474097.1 CDS Ssed_2360 NC_009831.1 2873696 2874265 D KEGG: slo:Shew_1902 NUDIX hydrolase; NUDIX hydrolase 2873696..2874265 Shewanella sediminis HAW-EB3 5612971 YP_001474098.1 CDS Ssed_2361 NC_009831.1 2874393 2874728 R KEGG: slo:Shew_1901 hypothetical protein; hypothetical protein complement(2874393..2874728) Shewanella sediminis HAW-EB3 5611452 YP_001474099.1 CDS asnC NC_009831.1 2874993 2876393 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2874993..2876393 Shewanella sediminis HAW-EB3 5611453 YP_001474100.1 CDS Ssed_2363 NC_009831.1 2876475 2877509 R KEGG: ppr:PBPRB0600 hypothetical protein; hypothetical protein complement(2876475..2877509) Shewanella sediminis HAW-EB3 5611454 YP_001474101.1 CDS Ssed_2364 NC_009831.1 2877553 2878518 R KEGG: ppr:PBPRB0601 hypothetical tight adherence TadC-related transmembrane protein; tight adherence TadC-like transmembrane protein complement(2877553..2878518) Shewanella sediminis HAW-EB3 5611455 YP_001474102.1 CDS Ssed_2365 NC_009831.1 2878521 2879498 R KEGG: ppr:PBPRB0602 hypothetical Flp pilus assembly protein TadB; Flp pilus assembly protein TadB complement(2878521..2879498) Shewanella sediminis HAW-EB3 5611031 YP_001474103.1 CDS Ssed_2366 NC_009831.1 2879510 2880835 R KEGG: ppr:PBPRB0603 pilus assembly protein; pilus assembly protein complement(2879510..2880835) Shewanella sediminis HAW-EB3 5611032 YP_001474104.1 CDS Ssed_2367 NC_009831.1 2880838 2882094 R KEGG: ppr:PBPRB0604 pilus assembly protein CpaE; Flp pilus assembly protein ATPase CpaE-like protein complement(2880838..2882094) Shewanella sediminis HAW-EB3 5611033 YP_001474105.1 CDS Ssed_2368 NC_009831.1 2882162 2882620 R KEGG: ppr:PBPRB0605 hypothetical protein; hypothetical protein complement(2882162..2882620) Shewanella sediminis HAW-EB3 5611034 YP_001474106.1 CDS Ssed_2369 NC_009831.1 2882617 2883114 R KEGG: ppr:PBPRB0606 hypothetical protein; hypothetical protein complement(2882617..2883114) Shewanella sediminis HAW-EB3 5611889 YP_001474107.1 CDS Ssed_2370 NC_009831.1 2883124 2884509 R KEGG: ppr:PBPRB0607 hypothetical protein; hypothetical protein complement(2883124..2884509) Shewanella sediminis HAW-EB3 5611890 YP_001474108.1 CDS Ssed_2371 NC_009831.1 2884851 2886302 R KEGG: vvy:VV2660 flp pilus assembly protein, secretin CpaC; flp pilus assembly protein, secretin CpaC complement(2884851..2886302) Shewanella sediminis HAW-EB3 5611891 YP_001474109.1 CDS Ssed_2372 NC_009831.1 2886343 2887167 R KEGG: ppr:PBPRB0611 hypothetical Flp pilus assembly protein; Flp pilus assembly protein CpaB-like protein complement(2886343..2887167) Shewanella sediminis HAW-EB3 5611424 YP_001474110.1 CDS Ssed_2373 NC_009831.1 2887208 2888524 R KEGG: ppr:PBPRB0612 hypothetical protein; hypothetical protein complement(2887208..2888524) Shewanella sediminis HAW-EB3 5611425 YP_001474111.1 CDS Ssed_2374 NC_009831.1 2888526 2889101 R KEGG: eba:ebA3718 hypothetical protein, Flp pilus assembly protein,protease; hypothetical protein complement(2888526..2889101) Shewanella sediminis HAW-EB3 5611426 YP_001474112.1 CDS Ssed_2375 NC_009831.1 2889207 2889407 R hypothetical protein complement(2889207..2889407) Shewanella sediminis HAW-EB3 5611427 YP_001474113.1 CDS Ssed_2376 NC_009831.1 2890016 2890468 R KEGG: vvy:VV3211 transposase and inactivated derivative; transposase and inactivated derivative complement(2890016..2890468) Shewanella sediminis HAW-EB3 5612181 YP_001474114.1 CDS Ssed_2377 NC_009831.1 2890472 2891923 R KEGG: aha:AHA_1222 cell wall degradation protein; hypothetical protein complement(2890472..2891923) Shewanella sediminis HAW-EB3 5612182 YP_001474115.1 CDS Ssed_2378 NC_009831.1 2892284 2892526 D hypothetical protein 2892284..2892526 Shewanella sediminis HAW-EB3 5612183 YP_001474116.1 CDS Ssed_2379 NC_009831.1 2892574 2894649 D KEGG: lpp:lpp2806 hypothetical protein; hypothetical protein 2892574..2894649 Shewanella sediminis HAW-EB3 5612184 YP_001474117.1 CDS Ssed_2380 NC_009831.1 2894861 2896102 D KEGG: ppr:PBPRB0424 hypothetical GGDEF family protein; diguanylate cyclase 2894861..2896102 Shewanella sediminis HAW-EB3 5612250 YP_001474118.1 CDS Ssed_2381 NC_009831.1 2896701 2897642 R KEGG: bcz:BCZK5129 glycosyltransferase, group 2 family protein; glycosyltransferase, group 2 family protein complement(2896701..2897642) Shewanella sediminis HAW-EB3 5612251 YP_001474119.1 CDS Ssed_2382 NC_009831.1 2897686 2898417 R KEGG: bte:BTH_II2259 generic methyltransferase; generic methyltransferase complement(2897686..2898417) Shewanella sediminis HAW-EB3 5612252 YP_001474120.1 CDS Ssed_2383 NC_009831.1 2898488 2900095 R KEGG: cbu:CBU_0617 hypothetical protein; hypothetical protein complement(2898488..2900095) Shewanella sediminis HAW-EB3 5612253 YP_001474121.1 CDS Ssed_2384 NC_009831.1 2900562 2900981 D KEGG: slo:Shew_1893 protein of unknown function UPF0047; hypothetical protein 2900562..2900981 Shewanella sediminis HAW-EB3 5612993 YP_001474122.1 CDS Ssed_2385 NC_009831.1 2901011 2901775 R KEGG: dde:Dde_3602 hypothetical protein; hypothetical protein complement(2901011..2901775) Shewanella sediminis HAW-EB3 5612994 YP_001474123.1 CDS Ssed_2386 NC_009831.1 2902072 2902758 D KEGG: pat:Patl_3085 flagellin-like; flagellin-like protein 2902072..2902758 Shewanella sediminis HAW-EB3 5612995 YP_001474124.1 CDS Ssed_2387 NC_009831.1 2902811 2906083 R KEGG: slo:Shew_1892 SNF2-related protein; non-specific serine/threonine protein kinase complement(2902811..2906083) Shewanella sediminis HAW-EB3 5613052 YP_001474125.1 CDS Ssed_2388 NC_009831.1 2906404 2907171 R KEGG: slo:Shew_2692 cytochrome b561; cytochrome b561 complement(2906404..2907171) Shewanella sediminis HAW-EB3 5613053 YP_001474126.1 CDS Ssed_2389 NC_009831.1 2907329 2909554 R KEGG: sbl:Sbal_4570 hypothetical protein; hypothetical protein complement(2907329..2909554) Shewanella sediminis HAW-EB3 5613054 YP_001474127.1 CDS Ssed_2390 NC_009831.1 2909924 2911183 R KEGG: she:Shewmr4_2131 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein complement(2909924..2911183) Shewanella sediminis HAW-EB3 5613055 YP_001474128.1 CDS Ssed_2391 NC_009831.1 2911328 2912716 R KEGG: slo:Shew_1884 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(2911328..2912716) Shewanella sediminis HAW-EB3 5612577 YP_001474129.1 CDS Ssed_2392 NC_009831.1 2912906 2913526 R hypothetical protein complement(2912906..2913526) Shewanella sediminis HAW-EB3 5612578 YP_001474130.1 CDS Ssed_2393 NC_009831.1 2913528 2915981 R KEGG: hch:HCH_06689 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; signal transduction protein complement(2913528..2915981) Shewanella sediminis HAW-EB3 5612579 YP_001474131.1 CDS Ssed_2394 NC_009831.1 2915988 2917064 R KEGG: hch:HCH_02001 spermidine/putrescine-binding periplasmic protein; spermidine/putrescine-binding periplasmic protein complement(2915988..2917064) Shewanella sediminis HAW-EB3 5612580 YP_001474132.1 CDS Ssed_2395 NC_009831.1 2917461 2917883 R KEGG: ppr:PBPRA1918 glyoxalase family protein; glyoxalase family protein complement(2917461..2917883) Shewanella sediminis HAW-EB3 5613642 YP_001474133.1 CDS Ssed_2396 NC_009831.1 2918040 2918189 D KEGG: sbl:Sbal_1509 protein of unknown function DUF6, transmembrane; hypothetical protein 2918040..2918189 Shewanella sediminis HAW-EB3 5613643 YP_001474134.1 CDS Ssed_2397 NC_009831.1 2918227 2918685 R KEGG: pfo:Pfl_5432 hypothetical protein; hypothetical protein complement(2918227..2918685) Shewanella sediminis HAW-EB3 5613644 YP_001474135.1 CDS Ssed_2398 NC_009831.1 2918813 2919061 D hypothetical protein 2918813..2919061 Shewanella sediminis HAW-EB3 5613645 YP_001474136.1 CDS Ssed_2399 NC_009831.1 2919231 2920517 D KEGG: slo:Shew_3493 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 2919231..2920517 Shewanella sediminis HAW-EB3 5610375 YP_001474137.1 CDS Ssed_2400 NC_009831.1 2920633 2921112 R hypothetical protein complement(2920633..2921112) Shewanella sediminis HAW-EB3 5610376 YP_001474138.1 CDS Ssed_2401 NC_009831.1 2921147 2922067 R KEGG: slo:Shew_1461 zinc carboxypeptidase-related protein; zinc carboxypeptidase-related protein complement(2921147..2922067) Shewanella sediminis HAW-EB3 5610377 YP_001474139.1 CDS Ssed_2402 NC_009831.1 2922175 2922681 R KEGG: ppr:PBPRB1420 hypothetical protein; hypothetical protein complement(2922175..2922681) Shewanella sediminis HAW-EB3 5613008 YP_001474140.1 CDS Ssed_2403 NC_009831.1 2922811 2923179 R KEGG: sfr:Sfri_1350 hypothetical protein; hypothetical protein complement(2922811..2923179) Shewanella sediminis HAW-EB3 5613009 YP_001474141.1 CDS Ssed_2404 NC_009831.1 2923404 2924321 D KEGG: csa:Csal_1188 transcriptional regulator, LysR family; LysR family transcriptional regulator 2923404..2924321 Shewanella sediminis HAW-EB3 5613010 YP_001474142.1 CDS Ssed_2405 NC_009831.1 2924581 2925678 D KEGG: csa:Csal_1189 porphyromonas-type peptidyl-arginine deiminase; agmatine deiminase 2924581..2925678 Shewanella sediminis HAW-EB3 5613011 YP_001474143.1 CDS Ssed_2406 NC_009831.1 2925750 2926838 D KEGG: yen:YE1484 putrescine-binding periplasmic protein precursor; putrescine-binding periplasmic protein 2925750..2926838 Shewanella sediminis HAW-EB3 5613465 YP_001474144.1 CDS Ssed_2407 NC_009831.1 2926874 2927833 D KEGG: vpa:VP1774 carbon-nitrogen hydrolase; carbon-nitrogen hydrolase 2926874..2927833 Shewanella sediminis HAW-EB3 5613466 YP_001474145.1 CDS Ssed_2408 NC_009831.1 2927897 2929039 R KEGG: shw:Sputw3181_2100 cupin 4 family protein; cupin 4 family protein complement(2927897..2929039) Shewanella sediminis HAW-EB3 5613467 YP_001474146.1 CDS Ssed_2409 NC_009831.1 2929405 2931495 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2929405..2931495 Shewanella sediminis HAW-EB3 5613468 YP_001474147.1 CDS Ssed_2410 NC_009831.1 2931924 2932550 D KEGG: ppr:PBPRB1229 DNA polymerase III; DNA-directed DNA polymerase 2931924..2932550 Shewanella sediminis HAW-EB3 5609770 YP_001474148.1 CDS Ssed_2411 NC_009831.1 2932676 2933383 R KEGG: shn:Shewana3_2253 hypothetical protein; hypothetical protein complement(2932676..2933383) Shewanella sediminis HAW-EB3 5609771 YP_001474149.1 CDS Ssed_2412 NC_009831.1 2933737 2935374 D KEGG: slo:Shew_1868 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2933737..2935374 Shewanella sediminis HAW-EB3 5609772 YP_001474150.1 CDS Ssed_2413 NC_009831.1 2935481 2935867 D KEGG: slo:Shew_1867 hypothetical protein; hypothetical protein 2935481..2935867 Shewanella sediminis HAW-EB3 5609773 YP_001474151.1 CDS Ssed_2414 NC_009831.1 2935904 2936161 D KEGG: shn:Shewana3_2256 phosphocarrier, HPr family; HPr family phosphocarrier protein 2935904..2936161 Shewanella sediminis HAW-EB3 5609729 YP_001474152.1 CDS Ssed_2415 NC_009831.1 2936336 2938036 D KEGG: shm:Shewmr7_1842 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2936336..2938036 Shewanella sediminis HAW-EB3 5609730 YP_001474153.1 CDS Ssed_2416 NC_009831.1 2938108 2938617 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2938108..2938617 Shewanella sediminis HAW-EB3 5609731 YP_001474154.1 CDS Ssed_2417 NC_009831.1 2938992 2939336 D KEGG: shm:Shewmr7_2120 hypothetical protein; hypothetical protein 2938992..2939336 Shewanella sediminis HAW-EB3 5613727 YP_001474155.1 CDS Ssed_2418 NC_009831.1 2939333 2940463 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2939333..2940463 Shewanella sediminis HAW-EB3 5613728 YP_001474156.1 CDS Ssed_2419 NC_009831.1 2940463 2941140 D KEGG: slo:Shew_1861 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 2940463..2941140 Shewanella sediminis HAW-EB3 5613729 YP_001474157.1 CDS Ssed_2420 NC_009831.1 2941189 2942025 D KEGG: slo:Shew_1860 alpha/beta hydrolase fold; alpha/beta hydrolase 2941189..2942025 Shewanella sediminis HAW-EB3 5613730 YP_001474158.1 CDS Ssed_2421 NC_009831.1 2942233 2942847 D KEGG: slo:Shew_1859 carbonate dehydratase; carbonate dehydratase 2942233..2942847 Shewanella sediminis HAW-EB3 5609832 YP_001474159.1 CDS Ssed_2422 NC_009831.1 2943150 2944334 D KEGG: slo:Shew_1858 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2943150..2944334 Shewanella sediminis HAW-EB3 5609833 YP_001474160.1 CDS Ssed_2423 NC_009831.1 2944420 2945490 D KEGG: slo:Shew_1857 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2944420..2945490 Shewanella sediminis HAW-EB3 5609834 YP_001474161.1 CDS Ssed_2424 NC_009831.1 2945609 2946346 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2945609..2946346 Shewanella sediminis HAW-EB3 5609835 YP_001474162.1 CDS Ssed_2425 NC_009831.1 2946388 2946624 D KEGG: slo:Shew_1855 hypothetical protein; hypothetical protein 2946388..2946624 Shewanella sediminis HAW-EB3 5613932 YP_001474163.1 CDS Ssed_2426 NC_009831.1 2946856 2947605 D KEGG: sat:SYN_01766 lysine decarboxylase family; lysine decarboxylase family protein 2946856..2947605 Shewanella sediminis HAW-EB3 5613933 YP_001474164.1 CDS Ssed_2427 NC_009831.1 2947732 2950827 R KEGG: slo:Shew_1852 acriflavin resistance protein; acriflavin resistance protein complement(2947732..2950827) Shewanella sediminis HAW-EB3 5613934 YP_001474165.1 CDS Ssed_2428 NC_009831.1 2950824 2951909 R KEGG: slo:Shew_1851 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(2950824..2951909) Shewanella sediminis HAW-EB3 5613935 YP_001474166.1 CDS Ssed_2429 NC_009831.1 2952175 2953296 R KEGG: slo:Shew_1849 NlpBDapX family lipoprotein; NlpB/DapX family lipoprotein complement(2952175..2953296) Shewanella sediminis HAW-EB3 5613774 YP_001474167.1 CDS Ssed_2430 NC_009831.1 2953300 2954184 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2953300..2954184) Shewanella sediminis HAW-EB3 5613775 YP_001474168.1 CDS Ssed_2431 NC_009831.1 2954483 2955022 D KEGG: slo:Shew_1847 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 2954483..2955022 Shewanella sediminis HAW-EB3 5613776 YP_001474169.1 CDS Ssed_2432 NC_009831.1 2955045 2955515 D KEGG: shw:Sputw3181_2325 redoxin domain protein; redoxin domain-containing protein 2955045..2955515 Shewanella sediminis HAW-EB3 5614150 YP_001474170.1 CDS Ssed_2433 NC_009831.1 2955647 2956255 R KEGG: slo:Shew_1845 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) complement(2955647..2956255) Shewanella sediminis HAW-EB3 5614151 YP_001474171.1 CDS Ssed_2434 NC_009831.1 2956387 2957274 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 2956387..2957274 Shewanella sediminis HAW-EB3 5614152 YP_001474172.1 CDS Ssed_2435 NC_009831.1 2957400 2958485 R KEGG: slo:Shew_1843 protein of unknown function UPF0118; hypothetical protein complement(2957400..2958485) Shewanella sediminis HAW-EB3 5614153 YP_001474173.1 CDS Ssed_2436 NC_009831.1 2958516 2958746 R KEGG: slo:Shew_1842 SirA family protein; SirA family protein complement(2958516..2958746) Shewanella sediminis HAW-EB3 5609659 YP_001474174.1 CDS Ssed_2437 NC_009831.1 2959064 2960524 D KEGG: slo:Shew_1841 peptidase M48, Ste24p; peptidase M48, Ste24p 2959064..2960524 Shewanella sediminis HAW-EB3 5609660 YP_001474175.1 CDS Ssed_2438 NC_009831.1 2960729 2961079 D KEGG: she:Shewmr4_2348 arsenate reductase; arsenate reductase 2960729..2961079 Shewanella sediminis HAW-EB3 5609661 YP_001474176.1 CDS Ssed_2439 NC_009831.1 2961094 2961465 D KEGG: sbl:Sbal_1788 hypothetical protein; hypothetical protein 2961094..2961465 Shewanella sediminis HAW-EB3 5609662 YP_001474177.1 CDS Ssed_2440 NC_009831.1 2961643 2963571 D KEGG: sbl:Sbal_1787 hypothetical protein; hypothetical protein 2961643..2963571 Shewanella sediminis HAW-EB3 5609909 YP_001474178.1 CDS Ssed_2441 NC_009831.1 2963647 2964357 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(2963647..2964357) Shewanella sediminis HAW-EB3 5609910 YP_001474179.1 CDS Ssed_2442 NC_009831.1 2964432 2965541 R KEGG: slo:Shew_1837 hypothetical protein; hypothetical protein complement(2964432..2965541) Shewanella sediminis HAW-EB3 5609911 YP_001474180.1 CDS Ssed_2443 NC_009831.1 2965737 2966963 D KEGG: slo:Shew_1836 uracil-xanthine permease; uracil-xanthine permease 2965737..2966963 Shewanella sediminis HAW-EB3 5609912 YP_001474181.1 CDS Ssed_2444 NC_009831.1 2967099 2967446 R KEGG: slo:Shew_1835 glutaredoxin-like protein; glutaredoxin-like protein complement(2967099..2967446) Shewanella sediminis HAW-EB3 5613781 YP_001474182.1 CDS Ssed_2445 NC_009831.1 2967801 2968382 D KEGG: saz:Sama_1920 superoxide dismutase; superoxide dismutase 2967801..2968382 Shewanella sediminis HAW-EB3 5613782 YP_001474183.1 CDS Ssed_2446 NC_009831.1 2968636 2970570 D KEGG: slo:Shew_1833 serine protein kinase, PrkA; serine protein kinase PrkA 2968636..2970570 Shewanella sediminis HAW-EB3 5613783 YP_001474184.1 CDS Ssed_2447 NC_009831.1 2970606 2971892 D KEGG: slo:Shew_1832 protein of unknown function DUF444; hypothetical protein 2970606..2971892 Shewanella sediminis HAW-EB3 5609707 YP_001474185.1 CDS Ssed_2448 NC_009831.1 2971902 2973422 D KEGG: slo:Shew_1831 SpoVR family protein; SpoVR family protein 2971902..2973422 Shewanella sediminis HAW-EB3 5609708 YP_001474186.1 CDS Ssed_2449 NC_009831.1 2973771 2974058 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(2973771..2974058) Shewanella sediminis HAW-EB3 5609709 YP_001474187.1 CDS Ssed_2450 NC_009831.1 2974198 2974746 R KEGG: shw:Sputw3181_2115 protein of unknown function DUF882; hypothetical protein complement(2974198..2974746) Shewanella sediminis HAW-EB3 5609710 YP_001474188.1 CDS Ssed_2451 NC_009831.1 2974857 2976254 R KEGG: slo:Shew_1828 peptidoglycan-binding domain 1 protein; peptidoglycan binding domain-containing protein complement(2974857..2976254) Shewanella sediminis HAW-EB3 5614212 YP_001474189.1 CDS Ssed_2452 NC_009831.1 2976455 2977048 R KEGG: slo:Shew_1827 methylation site containing protein; methylation site containing protein complement(2976455..2977048) Shewanella sediminis HAW-EB3 5614213 YP_001474190.1 CDS Ssed_2453 NC_009831.1 2978204 2978761 R KEGG: slo:Shew_1826 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; glutamate-1-semialdehyde 2,1-aminomutase complement(2978204..2978761) Shewanella sediminis HAW-EB3 5612661 YP_001474191.1 CDS uvrC NC_009831.1 2978809 2980638 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2978809..2980638) Shewanella sediminis HAW-EB3 5614215 YP_001474192.1 CDS Ssed_2455 NC_009831.1 2980685 2981329 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator complement(2980685..2981329) Shewanella sediminis HAW-EB3 5609618 YP_001474193.1 CDS Ssed_2456 NC_009831.1 2982149 2982583 R KEGG: net:Neut_0144 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(2982149..2982583) Shewanella sediminis HAW-EB3 5612662 YP_001474194.1 CDS Ssed_2457 NC_009831.1 2982783 2983505 R KEGG: son:SO4624 transcriptional regulator, LuxR family; hypothetical protein complement(2982783..2983505) Shewanella sediminis HAW-EB3 5609620 YP_001474195.1 CDS Ssed_2458 NC_009831.1 2983569 2984213 R hypothetical protein complement(2983569..2984213) Shewanella sediminis HAW-EB3 5609621 YP_001474196.1 CDS Ssed_2459 NC_009831.1 2984388 2984681 D KEGG: psa:PST_3402 ISxac3 transposase; ISxac3 transposase 2984388..2984681 Shewanella sediminis HAW-EB3 5610849 YP_001474197.1 CDS Ssed_2460 NC_009831.1 2984771 2985538 D KEGG: pca:Pcar_1347 transposase InsF for insertion sequence IS3A/B/C/D/E/fA; transposase InsF for insertion sequence IS3A/B/C/D/E/fA 2984771..2985538 Shewanella sediminis HAW-EB3 5610850 YP_001474198.1 CDS Ssed_2461 NC_009831.1 2986302 2986565 R hypothetical protein complement(2986302..2986565) Shewanella sediminis HAW-EB3 5610851 YP_001474199.1 CDS Ssed_2462 NC_009831.1 2987060 2987551 R hypothetical protein complement(2987060..2987551) Shewanella sediminis HAW-EB3 5610916 YP_001474200.1 CDS Ssed_2463 NC_009831.1 2988003 2988218 R KEGG: pat:Patl_2018 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2988003..2988218) Shewanella sediminis HAW-EB3 5610917 YP_001474201.1 CDS Ssed_2464 NC_009831.1 2988760 2990349 R KEGG: vpa:VP2137 hypothetical protein; hypothetical protein complement(2988760..2990349) Shewanella sediminis HAW-EB3 5610918 YP_001474202.1 CDS Ssed_2465 NC_009831.1 2990548 2991693 R KEGG: vpa:VP2136 pore-forming cytotoxin integrase; pore-forming cytotoxin integrase complement(2990548..2991693) Shewanella sediminis HAW-EB3 5610919 YP_001474203.1 CDS Ssed_2466 NC_009831.1 2991829 2993121 R KEGG: vpa:VP2131 hypothetical protein; hypothetical protein complement(2991829..2993121) Shewanella sediminis HAW-EB3 5611420 YP_001474204.1 CDS Ssed_2467 NC_009831.1 2993525 2995267 D KEGG: sbl:Sbal_2564 conserved hypothetical ATP-dependent protease; ATP-dependent protease 2993525..2995267 Shewanella sediminis HAW-EB3 5609651 YP_001474205.1 CDS Ssed_2468 NC_009831.1 2995337 2995852 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2995337..2995852 Shewanella sediminis HAW-EB3 5611422 YP_001474206.1 CDS Ssed_2469 NC_009831.1 2995932 2996108 R KEGG: slo:Shew_1816 ribosome modulation factor; ribosome modulation factor complement(2995932..2996108) Shewanella sediminis HAW-EB3 5611423 YP_001474207.1 CDS Ssed_2470 NC_009831.1 2996285 2998147 R KEGG: slo:Shew_1815 hypothetical protein; hypothetical protein complement(2996285..2998147) Shewanella sediminis HAW-EB3 5610076 YP_001474208.1 CDS Ssed_2471 NC_009831.1 2998177 3000093 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(2998177..3000093) Shewanella sediminis HAW-EB3 5610077 YP_001474209.1 CDS Ssed_2472 NC_009831.1 3000095 3000334 R KEGG: sbl:Sbal_2569 glutaredoxin 2; glutaredoxin complement(3000095..3000334) Shewanella sediminis HAW-EB3 5610078 YP_001474210.1 CDS rlmL NC_009831.1 3000324 3002459 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(3000324..3002459) Shewanella sediminis HAW-EB3 5610079 YP_001474211.1 CDS Ssed_2474 NC_009831.1 3003884 3004417 R KEGG: slo:Shew_1811 protein of unknown function DUF1379; hypothetical protein complement(3003884..3004417) Shewanella sediminis HAW-EB3 5611781 YP_001474212.1 CDS Ssed_2475 NC_009831.1 3004583 3005602 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(3004583..3005602) Shewanella sediminis HAW-EB3 5611382 YP_001474213.1 CDS Ssed_2476 NC_009831.1 3005662 3010506 R KEGG: slo:Shew_1809 NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(3005662..3010506) Shewanella sediminis HAW-EB3 5611383 YP_001474214.1 CDS Ssed_2477 NC_009831.1 3010772 3013090 R KEGG: slo:Shew_1808 hypothetical protein; hypothetical protein complement(3010772..3013090) Shewanella sediminis HAW-EB3 5610476 YP_001474215.1 CDS Ssed_2478 NC_009831.1 3013107 3014132 R KEGG: shm:Shewmr7_1753 BNR repeat protein; BNR repeat-containing protein complement(3013107..3014132) Shewanella sediminis HAW-EB3 5610477 YP_001474216.1 CDS Ssed_2479 NC_009831.1 3014191 3015555 R KEGG: slo:Shew_1806 protein of unknown function DUF1329; hypothetical protein complement(3014191..3015555) Shewanella sediminis HAW-EB3 5610478 YP_001474217.1 CDS Ssed_2480 NC_009831.1 3015574 3017634 R KEGG: slo:Shew_1805 protein of unknown function DUF1302; hypothetical protein complement(3015574..3017634) Shewanella sediminis HAW-EB3 5610479 YP_001474218.1 CDS Ssed_2481 NC_009831.1 3017962 3018177 R KEGG: shw:Sputw3181_1809 hypothetical protein; hypothetical protein complement(3017962..3018177) Shewanella sediminis HAW-EB3 5611160 YP_001474219.1 CDS pepN NC_009831.1 3018283 3020850 R KEGG: slo:Shew_1803 aminopeptidase N; aminopeptidase complement(3018283..3020850) Shewanella sediminis HAW-EB3 5611161 YP_001474220.1 CDS Ssed_2483 NC_009831.1 3020972 3023044 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(3020972..3023044) Shewanella sediminis HAW-EB3 5611162 YP_001474221.1 CDS Ssed_2484 NC_009831.1 3023074 3023727 R affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector complement(3023074..3023727) Shewanella sediminis HAW-EB3 5611163 YP_001474222.1 CDS Ssed_2485 NC_009831.1 3023983 3024462 R KEGG: sfr:Sfri_2230 GAF sensor protein; GAF sensor protein complement(3023983..3024462) Shewanella sediminis HAW-EB3 5610028 YP_001474223.1 CDS Ssed_2486 NC_009831.1 3024480 3024764 R KEGG: slo:Shew_1799 YebG family protein; hypothetical protein complement(3024480..3024764) Shewanella sediminis HAW-EB3 5610029 YP_001474224.1 CDS Ssed_2487 NC_009831.1 3024982 3025608 D KEGG: slo:Shew_1798 paraquat-inducible protein A; paraquat-inducible protein A 3024982..3025608 Shewanella sediminis HAW-EB3 5610030 YP_001474225.1 CDS Ssed_2488 NC_009831.1 3025601 3026242 D KEGG: sbl:Sbal_2452 paraquat-inducible protein A; paraquat-inducible protein A 3025601..3026242 Shewanella sediminis HAW-EB3 5610031 YP_001474226.1 CDS Ssed_2489 NC_009831.1 3026220 3028844 D KEGG: slo:Shew_1796 mammalian cell entry related domain protein; hypothetical protein 3026220..3028844 Shewanella sediminis HAW-EB3 5611355 YP_001474227.1 CDS Ssed_2490 NC_009831.1 3028976 3030001 D KEGG: shw:Sputw3181_2284 diguanylate cyclase; diguanylate cyclase 3028976..3030001 Shewanella sediminis HAW-EB3 5611356 YP_001474228.1 CDS Ssed_2491 NC_009831.1 3030082 3030702 R KEGG: she:Shewmr4_2199 sortase family protein; sortase family protein complement(3030082..3030702) Shewanella sediminis HAW-EB3 5611357 YP_001474229.1 CDS Ssed_2492 NC_009831.1 3030699 3033011 R KEGG: she:Shewmr4_2200 vault protein inter-alpha-trypsin domain protein; vault protein inter-alpha-trypsin subunit complement(3030699..3033011) Shewanella sediminis HAW-EB3 5609894 YP_001474230.1 CDS Ssed_2493 NC_009831.1 3033041 3033778 R KEGG: sfr:Sfri_1624 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3033041..3033778) Shewanella sediminis HAW-EB3 5609895 YP_001474231.1 CDS Ssed_2494 NC_009831.1 3034098 3034796 D KEGG: slo:Shew_1791 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3034098..3034796 Shewanella sediminis HAW-EB3 5609896 YP_001474232.1 CDS Ssed_2495 NC_009831.1 3034873 3037089 D KEGG: slo:Shew_1790 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3034873..3037089 Shewanella sediminis HAW-EB3 5609897 YP_001474233.1 CDS Ssed_2496 NC_009831.1 3037161 3038396 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3037161..3038396 Shewanella sediminis HAW-EB3 5611351 YP_001474234.1 CDS Ssed_2497 NC_009831.1 3038511 3039206 R KEGG: slo:Shew_1665 peptidase S51, dipeptidase E; peptidase S51, dipeptidase E complement(3038511..3039206) Shewanella sediminis HAW-EB3 5611352 YP_001474235.1 CDS Ssed_2498 NC_009831.1 3039534 3040691 D KEGG: slo:Shew_1968 beta-lactamase; beta-lactamase 3039534..3040691 Shewanella sediminis HAW-EB3 5611353 YP_001474236.1 CDS Ssed_2499 NC_009831.1 3041375 3042580 D KEGG: hit:NTHI1719 hypothetical protein; hypothetical protein 3041375..3042580 Shewanella sediminis HAW-EB3 5611354 YP_001474237.1 CDS Ssed_2500 NC_009831.1 3042580 3042975 D KEGG: hit:NTHI1718 hypothetical protein; hypothetical protein 3042580..3042975 Shewanella sediminis HAW-EB3 5612550 YP_001474238.1 CDS Ssed_2501 NC_009831.1 3043061 3043522 D hypothetical protein 3043061..3043522 Shewanella sediminis HAW-EB3 5612551 YP_001474239.1 CDS Ssed_2502 NC_009831.1 3044078 3046318 D KEGG: dps:DP2851 similar to collagenase; collagenase-like protein 3044078..3046318 Shewanella sediminis HAW-EB3 5612552 YP_001474240.1 CDS Ssed_2503 NC_009831.1 3046505 3047452 D KEGG: sbl:Sbal_3379 transcriptional regulator, LysR family; LysR family transcriptional regulator 3046505..3047452 Shewanella sediminis HAW-EB3 5612553 YP_001474241.1 CDS Ssed_2504 NC_009831.1 3047836 3048615 D KEGG: ape:APE_2105.1 uridine phosphorylase; uridine phosphorylase 3047836..3048615 Shewanella sediminis HAW-EB3 5610457 YP_001474242.1 CDS Ssed_2505 NC_009831.1 3048732 3048992 D KEGG: shm:Shewmr7_0408 hypothetical protein; hypothetical protein 3048732..3048992 Shewanella sediminis HAW-EB3 5610458 YP_001474243.1 CDS Ssed_2506 NC_009831.1 3049254 3049460 D KEGG: cps:CPS_3145 hypothetical protein; hypothetical protein 3049254..3049460 Shewanella sediminis HAW-EB3 5610459 YP_001474244.1 CDS Ssed_2507 NC_009831.1 3049490 3049684 D KEGG: aha:AHA_3577 hypothetical protein; hypothetical protein 3049490..3049684 Shewanella sediminis HAW-EB3 5611078 YP_001474245.1 CDS Ssed_2508 NC_009831.1 3049752 3050810 R KEGG: slo:Shew_2171 peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 complement(3049752..3050810) Shewanella sediminis HAW-EB3 5611079 YP_001474246.1 CDS Ssed_2511 NC_009831.1 3053146 3057105 D KEGG: slo:Shew_2173 protein of unknown function DUF490; hypothetical protein 3053146..3057105 Shewanella sediminis HAW-EB3 5611081 YP_001474247.1 CDS Ssed_2512 NC_009831.1 3057176 3057925 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(3057176..3057925) Shewanella sediminis HAW-EB3 5610057 YP_001474248.1 CDS nhaB NC_009831.1 3058238 3059821 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 3058238..3059821 Shewanella sediminis HAW-EB3 5610058 YP_001474249.1 CDS Ssed_2514 NC_009831.1 3059921 3060454 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 3059921..3060454 Shewanella sediminis HAW-EB3 5610059 YP_001474250.1 CDS Ssed_2515 NC_009831.1 3060589 3061479 R KEGG: slo:Shew_0037 phosphoesterase, PA-phosphatase related; hypothetical protein complement(3060589..3061479) Shewanella sediminis HAW-EB3 5610060 YP_001474251.1 CDS Ssed_2516 NC_009831.1 3061681 3062121 R KEGG: slo:Shew_2181 protein of unknown function UPF0153; hypothetical protein complement(3061681..3062121) Shewanella sediminis HAW-EB3 5610979 YP_001474252.1 CDS Ssed_2517 NC_009831.1 3062166 3063167 R KEGG: sbl:Sbal_1870 lytic murein transglycosylase; lytic murein transglycosylase complement(3062166..3063167) Shewanella sediminis HAW-EB3 5610980 YP_001474253.1 CDS Ssed_2518 NC_009831.1 3063206 3063487 R KEGG: slo:Shew_2183 protein of unknown function DUF709; hypothetical protein complement(3063206..3063487) Shewanella sediminis HAW-EB3 5610981 YP_001474254.1 CDS minC NC_009831.1 3063610 3064275 D blocks the formation of polar Z-ring septums; septum formation inhibitor 3063610..3064275 Shewanella sediminis HAW-EB3 5610982 YP_001474255.1 CDS Ssed_2520 NC_009831.1 3064301 3065110 D KEGG: slo:Shew_2185 septum site-determining protein MinD; septum site-determining protein MinD 3064301..3065110 Shewanella sediminis HAW-EB3 5609614 YP_001474256.1 CDS minE NC_009831.1 3065113 3065373 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3065113..3065373 Shewanella sediminis HAW-EB3 5609615 YP_001474257.1 CDS Ssed_2522 NC_009831.1 3065729 3066838 R KEGG: she:Shewmr4_2176 ribonuclease D; ribonuclease D complement(3065729..3066838) Shewanella sediminis HAW-EB3 5609616 YP_001474258.1 CDS Ssed_2523 NC_009831.1 3066938 3068611 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(3066938..3068611) Shewanella sediminis HAW-EB3 5609617 YP_001474259.1 CDS Ssed_2524 NC_009831.1 3068789 3069685 R KEGG: shn:Shewana3_2387 alpha/beta hydrolase fold; alpha/beta hydrolase complement(3068789..3069685) Shewanella sediminis HAW-EB3 5609992 YP_001474260.1 CDS Ssed_2525 NC_009831.1 3069707 3070537 R KEGG: slo:Shew_2190 hypothetical protein; hypothetical protein complement(3069707..3070537) Shewanella sediminis HAW-EB3 5609993 YP_001474261.1 CDS Ssed_2526 NC_009831.1 3070628 3071338 R KEGG: shw:Sputw3181_2267 hypothetical protein; hypothetical protein complement(3070628..3071338) Shewanella sediminis HAW-EB3 5609994 YP_001474262.1 CDS Ssed_2527 NC_009831.1 3071331 3071648 R KEGG: sbl:Sbal_1860 hypothetical protein; hypothetical protein complement(3071331..3071648) Shewanella sediminis HAW-EB3 5609856 YP_001474263.1 CDS Ssed_2528 NC_009831.1 3071838 3072557 R KEGG: son:SO2586 hypothetical protein; hypothetical protein complement(3071838..3072557) Shewanella sediminis HAW-EB3 5609857 YP_001474264.1 CDS Ssed_2529 NC_009831.1 3072772 3073470 R KEGG: hch:HCH_06317 GMP synthase - glutamine amidotransferase domain; GMP synthase glutamine amidotransferase subunit complement(3072772..3073470) Shewanella sediminis HAW-EB3 5609858 YP_001474265.1 CDS Ssed_2530 NC_009831.1 3073502 3074668 R KEGG: hch:HCH_06318 alcohol dehydrogenase, class IV; alcohol dehydrogenase complement(3073502..3074668) Shewanella sediminis HAW-EB3 5609859 YP_001474266.1 CDS Ssed_2531 NC_009831.1 3074714 3076192 R KEGG: hch:HCH_06320 NAD-dependent aldehyde dehydrogenase; NAD-dependent aldehyde dehydrogenase complement(3074714..3076192) Shewanella sediminis HAW-EB3 5610307 YP_001474267.1 CDS Ssed_2532 NC_009831.1 3076246 3077613 R KEGG: ppr:PBPRB0862 hypothetical protein; hypothetical protein complement(3076246..3077613) Shewanella sediminis HAW-EB3 5610308 YP_001474268.1 CDS Ssed_2533 NC_009831.1 3078437 3078910 R hypothetical protein complement(3078437..3078910) Shewanella sediminis HAW-EB3 5610309 YP_001474269.1 CDS Ssed_2534 NC_009831.1 3078951 3079820 R KEGG: slo:Shew_3111 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3078951..3079820) Shewanella sediminis HAW-EB3 5610310 YP_001474270.1 CDS Ssed_2535 NC_009831.1 3079852 3081789 R KEGG: slo:Shew_2196 helicase C2; helicase C2 complement(3079852..3081789) Shewanella sediminis HAW-EB3 5609583 YP_001474271.1 CDS Ssed_2536 NC_009831.1 3082036 3082683 R KEGG: aha:AHA_1620 MukF protein; MukF protein complement(3082036..3082683) Shewanella sediminis HAW-EB3 5609584 YP_001474272.1 CDS Ssed_2537 NC_009831.1 3082741 3084015 R KEGG: sbl:Sbal_3070 protein of unknown function DUF1063; hypothetical protein complement(3082741..3084015) Shewanella sediminis HAW-EB3 5609585 YP_001474273.1 CDS Ssed_2538 NC_009831.1 3084065 3084445 R KEGG: aha:AHA_1618 endoribonuclease L-PSP; endoribonuclease L-PSP complement(3084065..3084445) Shewanella sediminis HAW-EB3 5609586 YP_001474274.1 CDS Ssed_2539 NC_009831.1 3084740 3085492 D KEGG: psa:PST_2776 branched-chain amino acid transport protein AzlC; branched-chain amino acid transport protein AzlC 3084740..3085492 Shewanella sediminis HAW-EB3 5612961 YP_001474275.1 CDS Ssed_2540 NC_009831.1 3085497 3085841 D KEGG: reu:Reut_A0494 protein of unknown function DUF931; hypothetical protein 3085497..3085841 Shewanella sediminis HAW-EB3 5612962 YP_001474276.1 CDS hisG NC_009831.1 3086228 3087127 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 3086228..3087127 Shewanella sediminis HAW-EB3 5612963 YP_001474277.1 CDS hisD NC_009831.1 3087132 3088451 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3087132..3088451 Shewanella sediminis HAW-EB3 5612964 YP_001474278.1 CDS Ssed_2543 NC_009831.1 3088453 3089523 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3088453..3089523 Shewanella sediminis HAW-EB3 5609850 YP_001474279.1 CDS Ssed_2544 NC_009831.1 3089601 3090668 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 3089601..3090668 Shewanella sediminis HAW-EB3 5609851 YP_001474280.1 CDS hisH NC_009831.1 3090665 3091321 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3090665..3091321 Shewanella sediminis HAW-EB3 5609852 YP_001474281.1 CDS Ssed_2546 NC_009831.1 3091318 3092058 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3091318..3092058 Shewanella sediminis HAW-EB3 5609810 YP_001474282.1 CDS Ssed_2547 NC_009831.1 3092126 3092899 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3092126..3092899 Shewanella sediminis HAW-EB3 5609811 YP_001474283.1 CDS Ssed_2548 NC_009831.1 3092975 3093604 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 3092975..3093604 Shewanella sediminis HAW-EB3 5609812 YP_001474284.1 CDS Ssed_2549 NC_009831.1 3093879 3094658 D KEGG: ppr:PBPRB0536 hypothetical amino acid ABC transporter; amino acid ABC transporter 3093879..3094658 Shewanella sediminis HAW-EB3 5609813 YP_001474285.1 CDS Ssed_2550 NC_009831.1 3094808 3095020 D KEGG: slo:Shew_3110 hypothetical protein; hypothetical protein 3094808..3095020 Shewanella sediminis HAW-EB3 5609721 YP_001474286.1 CDS Ssed_2551 NC_009831.1 3095106 3095924 R KEGG: sdn:Sden_1071 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(3095106..3095924) Shewanella sediminis HAW-EB3 5609722 YP_001474287.1 CDS Ssed_2552 NC_009831.1 3096246 3097352 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 3096246..3097352 Shewanella sediminis HAW-EB3 5609723 YP_001474288.1 CDS Ssed_2553 NC_009831.1 3097458 3098027 R KEGG: slo:Shew_2272 hypothetical protein; hypothetical protein complement(3097458..3098027) Shewanella sediminis HAW-EB3 5609724 YP_001474289.1 CDS Ssed_2554 NC_009831.1 3098020 3102111 R KEGG: slo:Shew_1752 proprotein convertase, P; proprotein convertase, P complement(3098020..3102111) Shewanella sediminis HAW-EB3 5610084 YP_001474290.1 CDS Ssed_2555 NC_009831.1 3102098 3103693 R KEGG: slo:Shew_1751 hypothetical protein; hypothetical protein complement(3102098..3103693) Shewanella sediminis HAW-EB3 5610085 YP_001474291.1 CDS Ssed_2556 NC_009831.1 3103741 3104079 D KEGG: slo:Shew_2211 phosphoribosylaminoimidazolesuccinocarboxamide synthase; hypothetical protein 3103741..3104079 Shewanella sediminis HAW-EB3 5610086 YP_001474292.1 CDS Ssed_2557 NC_009831.1 3104548 3105756 R KEGG: slo:Shew_2481 porin, gram-negative type; porin complement(3104548..3105756) Shewanella sediminis HAW-EB3 5610087 YP_001474293.1 CDS Ssed_2558 NC_009831.1 3107345 3107677 D KEGG: bce:BC4820 hypothetical protein; hypothetical protein 3107345..3107677 Shewanella sediminis HAW-EB3 5610282 YP_001474294.1 CDS Ssed_2559 NC_009831.1 3107652 3108119 D KEGG: sfr:Sfri_3485 hypothetical protein; hypothetical protein 3107652..3108119 Shewanella sediminis HAW-EB3 5610283 YP_001474295.1 CDS Ssed_2560 NC_009831.1 3108240 3108515 D hypothetical protein 3108240..3108515 Shewanella sediminis HAW-EB3 5610284 YP_001474296.1 CDS Ssed_2561 NC_009831.1 3109232 3110704 D KEGG: sbl:Sbal_2317 RNA-directed DNA polymerase; RNA-directed DNA polymerase 3109232..3110704 Shewanella sediminis HAW-EB3 5609666 YP_001474297.1 CDS Ssed_2562 NC_009831.1 3110980 3111825 R KEGG: vfi:VFA1051 universal stress protein family; universal stress protein complement(3110980..3111825) Shewanella sediminis HAW-EB3 5609667 YP_001474298.1 CDS Ssed_2563 NC_009831.1 3111839 3113326 R KEGG: vfi:VFA1052 sulfate transporter; sulfate transporter complement(3111839..3113326) Shewanella sediminis HAW-EB3 5609668 YP_001474299.1 CDS Ssed_2564 NC_009831.1 3113776 3114519 R KEGG: sfr:Sfri_0205 pirin domain protein domain protein; pirin complement(3113776..3114519) Shewanella sediminis HAW-EB3 5609669 YP_001474300.1 CDS Ssed_2565 NC_009831.1 3114610 3115053 R KEGG: sfr:Sfri_0206 DoxX family protein; DoxX family protein complement(3114610..3115053) Shewanella sediminis HAW-EB3 5609802 YP_001474301.1 CDS Ssed_2566 NC_009831.1 3115212 3116105 D KEGG: sfr:Sfri_0207 transcriptional regulator, LysR family protein; LysR family transcriptional regulator 3115212..3116105 Shewanella sediminis HAW-EB3 5609803 YP_001474302.1 CDS Ssed_2567 NC_009831.1 3116246 3116986 R hypothetical protein complement(3116246..3116986) Shewanella sediminis HAW-EB3 5609804 YP_001474303.1 CDS Ssed_2568 NC_009831.1 3117755 3119896 R KEGG: pfu:PF0346 aldehyde:ferredoxin oxidoreductase (aor); aldehyde ferredoxin oxidoreductase complement(3117755..3119896) Shewanella sediminis HAW-EB3 5609805 YP_001474304.1 CDS Ssed_2569 NC_009831.1 3119905 3120591 R KEGG: gur:Gura_1944 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3119905..3120591) Shewanella sediminis HAW-EB3 5609679 YP_001474305.1 CDS Ssed_2570 NC_009831.1 3120588 3121475 R KEGG: reh:H16_B1454 formate dehydrogenase gamma subunit; hypothetical protein complement(3120588..3121475) Shewanella sediminis HAW-EB3 5609680 YP_001474306.1 CDS Ssed_2571 NC_009831.1 3122092 3123057 D KEGG: vvu:VV1_0456 transcriptional regulator; transcriptional regulator-like protein 3122092..3123057 Shewanella sediminis HAW-EB3 5609681 YP_001474307.1 CDS Ssed_2572 NC_009831.1 3123642 3123959 D KEGG: chu:CHU_1746 conserved hypothetical protein; possible ribosome-associated protein; hypothetical protein 3123642..3123959 Shewanella sediminis HAW-EB3 5609682 YP_001474308.1 CDS Ssed_2573 NC_009831.1 3124207 3124656 D KEGG: sfr:Sfri_1145 host cell attachment-required protein; host cell attachment-required protein 3124207..3124656 Shewanella sediminis HAW-EB3 5610195 YP_001474309.1 CDS Ssed_2574 NC_009831.1 3124800 3125216 D KEGG: pol:Bpro_3704 hypothetical protein; hypothetical protein 3124800..3125216 Shewanella sediminis HAW-EB3 5610196 YP_001474310.1 CDS Ssed_2575 NC_009831.1 3125409 3126152 D KEGG: ppr:PBPRB0338 hypothetical protein; hypothetical protein 3125409..3126152 Shewanella sediminis HAW-EB3 5610197 YP_001474311.1 CDS Ssed_2576 NC_009831.1 3126222 3126956 D KEGG: ppr:PBPRB0339 hypothetical protein; hypothetical protein 3126222..3126956 Shewanella sediminis HAW-EB3 5610198 YP_001474312.1 CDS Ssed_2577 NC_009831.1 3127305 3127823 D KEGG: ppr:PBPRB1080 hypothetical protein; hypothetical protein 3127305..3127823 Shewanella sediminis HAW-EB3 5610875 YP_001474313.1 CDS Ssed_2578 NC_009831.1 3127820 3128878 D KEGG: sfr:Sfri_0227 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3127820..3128878 Shewanella sediminis HAW-EB3 5610876 YP_001474314.1 CDS Ssed_2579 NC_009831.1 3129473 3130861 D hypothetical protein 3129473..3130861 Shewanella sediminis HAW-EB3 5610877 YP_001474315.1 CDS Ssed_2580 NC_009831.1 3130913 3131173 D KEGG: cps:CPS_2442 hypothetical protein; hypothetical protein 3130913..3131173 Shewanella sediminis HAW-EB3 5609790 YP_001474316.1 CDS Ssed_2581 NC_009831.1 3131252 3131404 D KEGG: cps:CPS_2442 hypothetical protein; hypothetical protein 3131252..3131404 Shewanella sediminis HAW-EB3 5609791 YP_001474317.1 CDS Ssed_2582 NC_009831.1 3131873 3132676 D hypothetical protein 3131873..3132676 Shewanella sediminis HAW-EB3 5609792 YP_001474318.1 CDS Ssed_2583 NC_009831.1 3132798 3133085 D KEGG: shw:Sputw3181_3270 hypothetical protein; hypothetical protein 3132798..3133085 Shewanella sediminis HAW-EB3 5609793 YP_001474319.1 CDS Ssed_2584 NC_009831.1 3133315 3134052 R KEGG: sth:STH592 ketoreductase; ketoreductase complement(3133315..3134052) Shewanella sediminis HAW-EB3 5610863 YP_001474320.1 CDS Ssed_2585 NC_009831.1 3134292 3134861 R KEGG: bsu:BG12528 similar to NAD(P)H oxidoreductase; NAD(P)H oxidoreductase-like protein complement(3134292..3134861) Shewanella sediminis HAW-EB3 5610864 YP_001474321.1 CDS Ssed_2586 NC_009831.1 3135014 3135904 D KEGG: jan:Jann_1168 transcriptional regulator, LysR family; carbonate dehydratase 3135014..3135904 Shewanella sediminis HAW-EB3 5610865 YP_001474322.1 CDS Ssed_2587 NC_009831.1 3135894 3136127 D KEGG: cps:CPS_2738 hypothetical protein; hypothetical protein 3135894..3136127 Shewanella sediminis HAW-EB3 5610866 YP_001474323.1 CDS Ssed_2588 NC_009831.1 3136345 3139413 D KEGG: gur:Gura_2254 PKD domain containing protein; hypothetical protein 3136345..3139413 Shewanella sediminis HAW-EB3 5610804 YP_001474324.1 CDS Ssed_2589 NC_009831.1 3139584 3141083 D KEGG: pca:Pcar_0361 sensor histidine kinase; sensor histidine kinase 3139584..3141083 Shewanella sediminis HAW-EB3 5610805 YP_001474325.1 CDS Ssed_2590 NC_009831.1 3141154 3141846 D KEGG: csa:Csal_0968 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3141154..3141846 Shewanella sediminis HAW-EB3 5610806 YP_001474326.1 CDS Ssed_2591 NC_009831.1 3141925 3142893 R hypothetical protein complement(3141925..3142893) Shewanella sediminis HAW-EB3 5610807 YP_001474327.1 CDS Ssed_2592 NC_009831.1 3143075 3144013 R KEGG: ppr:PBPRB1431 transcriptional regulator; transcriptional regulator complement(3143075..3144013) Shewanella sediminis HAW-EB3 5610762 YP_001474328.1 CDS Ssed_2593 NC_009831.1 3144171 3144494 D KEGG: ppr:PBPRB1432 hypothetical protein; hypothetical protein 3144171..3144494 Shewanella sediminis HAW-EB3 5610763 YP_001474329.1 CDS Ssed_2594 NC_009831.1 3144505 3144876 D KEGG: ppr:PBPRB1433 hypothetical protein; hypothetical protein 3144505..3144876 Shewanella sediminis HAW-EB3 5610764 YP_001474330.1 CDS Ssed_2595 NC_009831.1 3144996 3145931 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(3144996..3145931) Shewanella sediminis HAW-EB3 5613449 YP_001474331.1 CDS ihfA NC_009831.1 3146166 3146462 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(3146166..3146462) Shewanella sediminis HAW-EB3 5613450 YP_001474332.1 CDS pheT NC_009831.1 3146468 3148855 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3146468..3148855) Shewanella sediminis HAW-EB3 5613451 YP_001474333.1 CDS pheS NC_009831.1 3148871 3149854 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3148871..3149854) Shewanella sediminis HAW-EB3 5613452 YP_001474334.1 CDS Ssed_2599 NC_009831.1 3150258 3151763 D KEGG: slo:Shew_2217 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3150258..3151763 Shewanella sediminis HAW-EB3 5610705 YP_001474335.1 CDS Ssed_2600 NC_009831.1 3151935 3154547 D KEGG: sbl:Sbal_1775 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 3151935..3154547 Shewanella sediminis HAW-EB3 5610706 YP_001474336.1 CDS Ssed_2601 NC_009831.1 3154872 3155741 R KEGG: slo:Shew_2219 protein of unknown function DUF785; hypothetical protein complement(3154872..3155741) Shewanella sediminis HAW-EB3 5610707 YP_001474337.1 CDS Ssed_2602 NC_009831.1 3156009 3156392 R KEGG: slo:Shew_2220 hypothetical protein; hypothetical protein complement(3156009..3156392) Shewanella sediminis HAW-EB3 5610708 YP_001474338.1 CDS Ssed_2603 NC_009831.1 3156422 3156709 R KEGG: slo:Shew_2221 hypothetical protein; hypothetical protein complement(3156422..3156709) Shewanella sediminis HAW-EB3 5610364 YP_001474339.1 CDS Ssed_2604 NC_009831.1 3156805 3157161 R KEGG: shm:Shewmr7_1637 hypothetical protein; hypothetical protein complement(3156805..3157161) Shewanella sediminis HAW-EB3 5610365 YP_001474340.1 CDS Ssed_2605 NC_009831.1 3157292 3157867 R KEGG: shm:Shewmr7_1636 YceI family protein; hypothetical protein complement(3157292..3157867) Shewanella sediminis HAW-EB3 5610366 YP_001474341.1 CDS Ssed_2606 NC_009831.1 3158305 3158946 R KEGG: slo:Shew_1622 pyridoxamine 5'-phosphate oxidase; pyridoxal 5'-phosphate synthase complement(3158305..3158946) Shewanella sediminis HAW-EB3 5610367 YP_001474342.1 CDS Ssed_2607 NC_009831.1 3159010 3159930 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3159010..3159930) Shewanella sediminis HAW-EB3 5610935 YP_001474343.1 CDS Ssed_2608 NC_009831.1 3159961 3160890 R KEGG: saz:Sama_1962 adenosylmethionine decarboxylase; adenosylmethionine decarboxylase complement(3159961..3160890) Shewanella sediminis HAW-EB3 5610936 YP_001474344.1 CDS Ssed_2609 NC_009831.1 3160941 3162854 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3160941..3162854) Shewanella sediminis HAW-EB3 5610937 YP_001474345.1 CDS Ssed_2610 NC_009831.1 3163286 3164119 D KEGG: slo:Shew_1618 hypothetical protein; hypothetical protein 3163286..3164119 Shewanella sediminis HAW-EB3 5610938 YP_001474346.1 CDS Ssed_2611 NC_009831.1 3164260 3164925 D KEGG: son:SO1867 hypothetical protein; hypothetical protein 3164260..3164925 Shewanella sediminis HAW-EB3 5610947 YP_001474347.1 CDS Ssed_2612 NC_009831.1 3165113 3165949 D KEGG: slo:Shew_1616 hypothetical protein; hypothetical protein 3165113..3165949 Shewanella sediminis HAW-EB3 5610948 YP_001474348.1 CDS Ssed_2613 NC_009831.1 3165946 3166845 D KEGG: slo:Shew_1615 ABC transporter-related protein; ABC transporter-like protein 3165946..3166845 Shewanella sediminis HAW-EB3 5610949 YP_001474349.1 CDS Ssed_2614 NC_009831.1 3167275 3167481 R KEGG: slo:Shew_1614 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein complement(3167275..3167481) Shewanella sediminis HAW-EB3 5610735 YP_001474350.1 CDS rrmA NC_009831.1 3167782 3168597 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase complement(3167782..3168597) Shewanella sediminis HAW-EB3 5610736 YP_001474351.1 CDS Ssed_2616 NC_009831.1 3168618 3169439 R KEGG: slo:Shew_1612 hypothetical protein; hypothetical protein complement(3168618..3169439) Shewanella sediminis HAW-EB3 5610737 YP_001474352.1 CDS sbcB NC_009831.1 3169751 3171163 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 3169751..3171163 Shewanella sediminis HAW-EB3 5610738 YP_001474353.1 CDS Ssed_2618 NC_009831.1 3171260 3172150 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 3171260..3172150 Shewanella sediminis HAW-EB3 5610674 YP_001474354.1 CDS Ssed_2619 NC_009831.1 3172222 3173097 R KEGG: slo:Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(3172222..3173097) Shewanella sediminis HAW-EB3 5610675 YP_001474355.1 CDS Ssed_2620 NC_009831.1 3173214 3173696 R KEGG: saz:Sama_1977 cytosolic long-chain acyl-CoA thioester hydrolase family protein; cytosolic long-chain acyl-CoA thioester hydrolase family protein complement(3173214..3173696) Shewanella sediminis HAW-EB3 5610676 YP_001474356.1 CDS Ssed_2621 NC_009831.1 3173793 3174161 R KEGG: spc:Sputcn32_1585 hypothetical protein; hypothetical protein complement(3173793..3174161) Shewanella sediminis HAW-EB3 5610677 YP_001474357.1 CDS Ssed_2622 NC_009831.1 3174446 3175702 R KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase complement(3174446..3175702) Shewanella sediminis HAW-EB3 5613646 YP_001474358.1 CDS acpP NC_009831.1 3175910 3176143 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3175910..3176143) Shewanella sediminis HAW-EB3 5613647 YP_001474359.1 CDS Ssed_2624 NC_009831.1 3176303 3177049 R KEGG: slo:Shew_1603 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase complement(3176303..3177049) Shewanella sediminis HAW-EB3 5613648 YP_001474360.1 CDS Ssed_2625 NC_009831.1 3177059 3177988 R KEGG: she:Shewmr4_2397 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(3177059..3177988) Shewanella sediminis HAW-EB3 5613649 YP_001474361.1 CDS Ssed_2626 NC_009831.1 3178039 3178998 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3178039..3178998) Shewanella sediminis HAW-EB3 5613232 YP_001474362.1 CDS Ssed_2627 NC_009831.1 3179010 3180038 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(3179010..3180038) Shewanella sediminis HAW-EB3 5613233 YP_001474363.1 CDS Ssed_2628 NC_009831.1 3180054 3180224 R KEGG: sfr:Sfri_1495 ribosomal protein L32; 50S ribosomal protein L32 complement(3180054..3180224) Shewanella sediminis HAW-EB3 5613234 YP_001474364.1 CDS Ssed_2629 NC_009831.1 3180242 3180766 R KEGG: slo:Shew_1598 protein of unknown function DUF177; hypothetical protein complement(3180242..3180766) Shewanella sediminis HAW-EB3 5613614 YP_001474365.1 CDS Ssed_2630 NC_009831.1 3181104 3181694 D KEGG: shm:Shewmr7_2472 maf protein; maf protein 3181104..3181694 Shewanella sediminis HAW-EB3 5613615 YP_001474366.1 CDS Ssed_2631 NC_009831.1 3181823 3183226 D KEGG: slo:Shew_1596 diguanylate cyclase with PAS/PAC sensor; PAS/PAC sensor-containing diguanylate cyclase 3181823..3183226 Shewanella sediminis HAW-EB3 5613616 YP_001474367.1 CDS Ssed_2632 NC_009831.1 3183337 3183987 R KEGG: slo:Shew_1595 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(3183337..3183987) Shewanella sediminis HAW-EB3 5613617 YP_001474368.1 CDS Ssed_2633 NC_009831.1 3183984 3184961 R KEGG: slo:Shew_1594 pseudouridine synthase, RluA family; lysozyme complement(3183984..3184961) Shewanella sediminis HAW-EB3 5613160 YP_001474369.1 CDS Ssed_2634 NC_009831.1 3185535 3189140 D KEGG: slo:Shew_1593 ribonuclease, Rne/Rng family; ribonuclease 3185535..3189140 Shewanella sediminis HAW-EB3 5613161 YP_001474370.1 CDS Ssed_2635 NC_009831.1 3189273 3190829 D KEGG: slo:Shew_1592 sulphate transporter; sulfate transporter 3189273..3190829 Shewanella sediminis HAW-EB3 5613162 YP_001474371.1 CDS Ssed_2636 NC_009831.1 3190899 3191804 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(3190899..3191804) Shewanella sediminis HAW-EB3 5613163 YP_001474372.1 CDS Ssed_2637 NC_009831.1 3192091 3192963 D KEGG: slo:Shew_1590 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 3192091..3192963 Shewanella sediminis HAW-EB3 5613094 YP_001474373.1 CDS rbgA NC_009831.1 3193154 3194092 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 3193154..3194092 Shewanella sediminis HAW-EB3 5613095 YP_001474374.1 CDS Ssed_2639 NC_009831.1 3194284 3195129 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(3194284..3195129) Shewanella sediminis HAW-EB3 5613096 YP_001474375.1 CDS Ssed_2640 NC_009831.1 3195447 3195818 D KEGG: shn:Shewana3_2402 diacylglycerol kinase; diacylglycerol kinase 3195447..3195818 Shewanella sediminis HAW-EB3 5613097 YP_001474376.1 CDS Ssed_2641 NC_009831.1 3196098 3196979 D KEGG: slo:Shew_1585 hypothetical protein; hypothetical protein 3196098..3196979 Shewanella sediminis HAW-EB3 5612876 YP_001474377.1 CDS Ssed_2642 NC_009831.1 3197324 3197758 D hypothetical protein 3197324..3197758 Shewanella sediminis HAW-EB3 5612877 YP_001474378.1 CDS Ssed_2643 NC_009831.1 3197825 3199051 R KEGG: slo:Shew_1584 nucleoside recognition domain protein; nucleoside recognition domain-containing protein complement(3197825..3199051) Shewanella sediminis HAW-EB3 5612878 YP_001474379.1 CDS yebU NC_009831.1 3199274 3200710 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 3199274..3200710 Shewanella sediminis HAW-EB3 5612879 YP_001474380.1 CDS Ssed_2645 NC_009831.1 3200913 3201701 R KEGG: sbl:Sbal_2456 hydrolase, TatD family; TatD family hydrolase complement(3200913..3201701) Shewanella sediminis HAW-EB3 5612755 YP_001474381.1 CDS Ssed_2646 NC_009831.1 3201814 3202140 R KEGG: slo:Shew_1581 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(3201814..3202140) Shewanella sediminis HAW-EB3 5612756 YP_001474382.1 CDS Ssed_2647 NC_009831.1 3202148 3203062 R KEGG: slo:Shew_1580 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase complement(3202148..3203062) Shewanella sediminis HAW-EB3 5612757 YP_001474383.1 CDS tmk NC_009831.1 3203062 3203694 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(3203062..3203694) Shewanella sediminis HAW-EB3 5612681 YP_001474384.1 CDS Ssed_2649 NC_009831.1 3203691 3204698 R KEGG: slo:Shew_1578 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(3203691..3204698) Shewanella sediminis HAW-EB3 5612682 YP_001474385.1 CDS Ssed_2650 NC_009831.1 3204695 3205510 R KEGG: sbl:Sbal_2461 aminotransferase, class IV; aminotransferase, class IV complement(3204695..3205510) Shewanella sediminis HAW-EB3 5612683 YP_001474386.1 CDS Ssed_2651 NC_009831.1 3205764 3206399 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(3205764..3206399) Shewanella sediminis HAW-EB3 5612684 YP_001474387.1 CDS Ssed_2652 NC_009831.1 3206412 3207527 R KEGG: spc:Sputcn32_2219 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein complement(3206412..3207527) Shewanella sediminis HAW-EB3 5612597 YP_001474388.1 CDS metG NC_009831.1 3207689 3209767 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3207689..3209767 Shewanella sediminis HAW-EB3 5612598 YP_001474389.1 CDS Ssed_2654 NC_009831.1 3209934 3211517 R KEGG: nmc:NMC1969 adhesin/invasin; hypothetical protein complement(3209934..3211517) Shewanella sediminis HAW-EB3 5612599 YP_001474390.1 CDS Ssed_2655 NC_009831.1 3211776 3212276 R KEGG: shn:Shewana3_2415 CreA family protein; CreA family protein complement(3211776..3212276) Shewanella sediminis HAW-EB3 5612600 YP_001474391.1 CDS Ssed_2656 NC_009831.1 3212276 3213655 R KEGG: slo:Shew_1787 hypothetical protein; chaperone complement(3212276..3213655) Shewanella sediminis HAW-EB3 5612623 YP_001474392.1 CDS Ssed_2657 NC_009831.1 3213832 3214341 R KEGG: pin:Ping_2839 YbaK/prolyl-tRNA synthetase associated region; prolyl-tRNA synthetase complement(3213832..3214341) Shewanella sediminis HAW-EB3 5612624 YP_001474393.1 CDS Ssed_2658 NC_009831.1 3214488 3215993 D KEGG: sdn:Sden_2190 protein of unknown function DUF107; hypothetical protein 3214488..3215993 Shewanella sediminis HAW-EB3 5612625 YP_001474394.1 CDS Ssed_2659 NC_009831.1 3215974 3216774 D KEGG: slo:Shew_1785 band 7 protein; hypothetical protein 3215974..3216774 Shewanella sediminis HAW-EB3 5612626 YP_001474395.1 CDS Ssed_2660 NC_009831.1 3216929 3217909 R KEGG: sbl:Sbal_2378 rhodanese domain protein; rhodanese domain-containing protein complement(3216929..3217909) Shewanella sediminis HAW-EB3 5612396 YP_001474396.1 CDS Ssed_2661 NC_009831.1 3218127 3218786 D KEGG: slo:Shew_1780 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3218127..3218786 Shewanella sediminis HAW-EB3 5612397 YP_001474397.1 CDS Ssed_2662 NC_009831.1 3218884 3219840 D KEGG: noc:Noc_0394 protein of unknown function DUF523; hypothetical protein 3218884..3219840 Shewanella sediminis HAW-EB3 5612398 YP_001474398.1 CDS Ssed_2663 NC_009831.1 3219837 3220340 D KEGG: bja:bll5189 hypothetical protein; hypothetical protein 3219837..3220340 Shewanella sediminis HAW-EB3 5612585 YP_001474399.1 CDS Ssed_2664 NC_009831.1 3220467 3221099 D KEGG: slo:Shew_2370 methyltransferase type 11; type 11 methyltransferase 3220467..3221099 Shewanella sediminis HAW-EB3 5612586 YP_001474400.1 CDS Ssed_2665 NC_009831.1 3221481 3222707 D KEGG: slo:Shew_1777 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3221481..3222707 Shewanella sediminis HAW-EB3 5612587 YP_001474401.1 CDS Ssed_2666 NC_009831.1 3223270 3224991 D KEGG: slo:Shew_1776 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase 3 catalytic subunit 3223270..3224991 Shewanella sediminis HAW-EB3 5612588 YP_001474402.1 CDS ilvH NC_009831.1 3224991 3225485 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 3224991..3225485 Shewanella sediminis HAW-EB3 5612338 YP_001474403.1 CDS Ssed_2668 NC_009831.1 3225605 3226048 R KEGG: slo:Shew_2134 heat shock protein HSP20; heat shock protein Hsp20 complement(3225605..3226048) Shewanella sediminis HAW-EB3 5612339 YP_001474404.1 CDS ushA NC_009831.1 3226352 3228061 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(3226352..3228061) Shewanella sediminis HAW-EB3 5612340 YP_001474405.1 CDS Ssed_2670 NC_009831.1 3228427 3229098 R KEGG: sdn:Sden_2138 carboxylesterase; carboxylesterase complement(3228427..3229098) Shewanella sediminis HAW-EB3 5612341 YP_001474406.1 CDS Ssed_2671 NC_009831.1 3229267 3230280 D KEGG: slo:Shew_2137 glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 3229267..3230280 Shewanella sediminis HAW-EB3 5612213 YP_001474407.1 CDS Ssed_2672 NC_009831.1 3230353 3230574 R KEGG: slo:Shew_2138 hypothetical protein; hypothetical protein complement(3230353..3230574) Shewanella sediminis HAW-EB3 5612214 YP_001474408.1 CDS Ssed_2673 NC_009831.1 3230661 3231143 R KEGG: slo:Shew_2139 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(3230661..3231143) Shewanella sediminis HAW-EB3 5612215 YP_001474409.1 CDS Ssed_2674 NC_009831.1 3231227 3232099 R KEGG: slo:Shew_2140 hypothetical protein; hypothetical protein complement(3231227..3232099) Shewanella sediminis HAW-EB3 5612216 YP_001474410.1 CDS Ssed_2675 NC_009831.1 3232271 3233404 R KEGG: slo:Shew_2141 lytic murein transglycosylase; lytic murein transglycosylase complement(3232271..3233404) Shewanella sediminis HAW-EB3 5612240 YP_001474411.1 CDS Ssed_2676 NC_009831.1 3233713 3234072 D KEGG: sdn:Sden_2142 hypothetical protein; hypothetical protein 3233713..3234072 Shewanella sediminis HAW-EB3 5612241 YP_001474412.1 CDS Ssed_2677 NC_009831.1 3234190 3234855 D KEGG: slo:Shew_2143 hypothetical protein; hypothetical protein 3234190..3234855 Shewanella sediminis HAW-EB3 5612242 YP_001474413.1 CDS Ssed_2678 NC_009831.1 3234891 3235829 R KEGG: slo:Shew_2144 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein complement(3234891..3235829) Shewanella sediminis HAW-EB3 5612243 YP_001474414.1 CDS Ssed_2679 NC_009831.1 3236818 3236991 D KEGG: shm:Shewmr7_2349 hypothetical protein; hypothetical protein 3236818..3236991 Shewanella sediminis HAW-EB3 5611855 YP_001474415.1 CDS Ssed_2680 NC_009831.1 3237320 3238243 R KEGG: slo:Shew_2147 hypothetical protein; hypothetical protein complement(3237320..3238243) Shewanella sediminis HAW-EB3 5611856 YP_001474416.1 CDS Ssed_2681 NC_009831.1 3238446 3238853 D KEGG: shw:Sputw3181_1678 protein of unknown function DUF307; hypothetical protein 3238446..3238853 Shewanella sediminis HAW-EB3 5611857 YP_001474417.1 CDS Ssed_2682 NC_009831.1 3238913 3239620 R KEGG: slo:Shew_2149 conserved hypothetical ABC transporter protein; ABC transporter complement(3238913..3239620) Shewanella sediminis HAW-EB3 5612130 YP_001474418.1 CDS Ssed_2683 NC_009831.1 3239834 3240085 D KEGG: slo:Shew_2150 integral membrane protein TerC; integral membrane protein TerC 3239834..3240085 Shewanella sediminis HAW-EB3 5612131 YP_001474419.1 CDS Ssed_2684 NC_009831.1 3240316 3241308 D KEGG: shm:Shewmr7_2292 cytochrome-c peroxidase; cytochrome-c peroxidase 3240316..3241308 Shewanella sediminis HAW-EB3 5612132 YP_001474420.1 CDS Ssed_2685 NC_009831.1 3241402 3241758 R KEGG: spc:Sputcn32_1678 hypothetical protein; hypothetical protein complement(3241402..3241758) Shewanella sediminis HAW-EB3 5612133 YP_001474421.1 CDS Ssed_2686 NC_009831.1 3242185 3243078 R KEGG: slo:Shew_2153 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3242185..3243078) Shewanella sediminis HAW-EB3 5611833 YP_001474422.1 CDS Ssed_2687 NC_009831.1 3243301 3244341 D KEGG: slo:Shew_2155 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 3243301..3244341 Shewanella sediminis HAW-EB3 5611834 YP_001474423.1 CDS Ssed_2688 NC_009831.1 3244470 3245087 D KEGG: slo:Shew_2156 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) 3244470..3245087 Shewanella sediminis HAW-EB3 5611835 YP_001474424.1 CDS Ssed_2689 NC_009831.1 3245349 3247097 D KEGG: she:Shewmr4_2297 gamma-glutamyltransferase; gamma-glutamyltransferase 3245349..3247097 Shewanella sediminis HAW-EB3 5611836 YP_001474425.1 CDS Ssed_2690 NC_009831.1 3247167 3248741 R KEGG: slo:Shew_2159 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor complement(3247167..3248741) Shewanella sediminis HAW-EB3 5611803 YP_001474426.1 CDS Ssed_2691 NC_009831.1 3249030 3250634 R KEGG: she:Shewmr4_2301 dipeptidase; hypothetical protein complement(3249030..3250634) Shewanella sediminis HAW-EB3 5611804 YP_001474427.1 CDS Ssed_2692 NC_009831.1 3250824 3253004 D KEGG: slo:Shew_2161 peptidyl-dipeptidase DCP; peptidyl-dipeptidase Dcp 3250824..3253004 Shewanella sediminis HAW-EB3 5611805 YP_001474428.1 CDS Ssed_2693 NC_009831.1 3253121 3253726 D KEGG: shw:Sputw3181_1832 protein of unknown function DUF938; hypothetical protein 3253121..3253726 Shewanella sediminis HAW-EB3 5611806 YP_001474429.1 CDS Ssed_2694 NC_009831.1 3254311 3256446 D KEGG: tde:TDE0870 phosphatase/nucleotidase; phosphatase/nucleotidase 3254311..3256446 Shewanella sediminis HAW-EB3 5611782 YP_001474430.1 CDS Ssed_2695 NC_009831.1 3256489 3257793 D KEGG: tde:TDE0869 hypothetical protein; hypothetical protein 3256489..3257793 Shewanella sediminis HAW-EB3 5611783 YP_001474431.1 CDS Ssed_2696 NC_009831.1 3257943 3259733 R KEGG: sfr:Sfri_2744 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase complement(3257943..3259733) Shewanella sediminis HAW-EB3 5611784 YP_001474432.1 CDS Ssed_2697 NC_009831.1 3260001 3260849 D KEGG: slo:Shew_2165 aldose 1-epimerase; aldose 1-epimerase 3260001..3260849 Shewanella sediminis HAW-EB3 5611763 YP_001474433.1 CDS Ssed_2698 NC_009831.1 3261389 3265006 D KEGG: sbl:Sbal_2434 hypothetical protein; hypothetical protein 3261389..3265006 Shewanella sediminis HAW-EB3 5611764 YP_001474434.1 CDS Ssed_2699 NC_009831.1 3265185 3265385 D KEGG: slo:Shew_2167 hypothetical protein; hypothetical protein 3265185..3265385 Shewanella sediminis HAW-EB3 5611765 YP_001474435.1 CDS Ssed_2700 NC_009831.1 3265413 3265733 D KEGG: slo:Shew_2168 uncharacterized conserved protein UCP025560; hypothetical protein 3265413..3265733 Shewanella sediminis HAW-EB3 5611766 YP_001474436.1 CDS Ssed_2701 NC_009831.1 3266051 3267352 D KEGG: vfi:VF2354 anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 3266051..3267352 Shewanella sediminis HAW-EB3 5612808 YP_001474437.1 CDS Ssed_2702 NC_009831.1 3267500 3267922 R KEGG: shm:Shewmr7_1182 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3267500..3267922) Shewanella sediminis HAW-EB3 5612809 YP_001474438.1 CDS Ssed_2703 NC_009831.1 3268033 3268548 R KEGG: shm:Shewmr7_1183 hypothetical protein; hypothetical protein complement(3268033..3268548) Shewanella sediminis HAW-EB3 5612810 YP_001474439.1 CDS Ssed_2704 NC_009831.1 3269034 3269972 D KEGG: maq:Maqu_0074 initiation factor 2B related; initiation factor 2B related 3269034..3269972 Shewanella sediminis HAW-EB3 5612811 YP_001474440.1 CDS Ssed_2705 NC_009831.1 3270042 3270902 R KEGG: reu:Reut_B5117 regulatory protein, LysR:LysR, substrate-binding; regulatory protein LysR complement(3270042..3270902) Shewanella sediminis HAW-EB3 5614088 YP_001474441.1 CDS Ssed_2706 NC_009831.1 3271038 3272135 R KEGG: son:SO3298 hypothetical protein; hypothetical protein complement(3271038..3272135) Shewanella sediminis HAW-EB3 5614089 YP_001474442.1 CDS Ssed_2707 NC_009831.1 3272230 3273459 R KEGG: pca:Pcar_1087 NADH:flavin oxidoreductase, Old Yellow enzyme family; NADH:flavin oxidoreductase complement(3272230..3273459) Shewanella sediminis HAW-EB3 5614090 YP_001474443.1 CDS Ssed_2708 NC_009831.1 3273480 3273890 R KEGG: dde:Dde_3182 cytochrome c3; cytochrome c3 complement(3273480..3273890) Shewanella sediminis HAW-EB3 5614091 YP_001474444.1 CDS Ssed_2709 NC_009831.1 3274550 3274933 D KEGG: sfr:Sfri_2098 lactoylglutathione lyase; lactoylglutathione lyase 3274550..3274933 Shewanella sediminis HAW-EB3 5613171 YP_001474445.1 CDS Ssed_2710 NC_009831.1 3274951 3276051 D KEGG: sfr:Sfri_2099 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3274951..3276051 Shewanella sediminis HAW-EB3 5613172 YP_001474446.1 CDS Ssed_2711 NC_009831.1 3276264 3277166 D KEGG: pin:Ping_2149 hypothetical transmembrane protein DUF6; hypothetical protein 3276264..3277166 Shewanella sediminis HAW-EB3 5613173 YP_001474447.1 CDS Ssed_2712 NC_009831.1 3277498 3278970 R KEGG: sbl:Sbal_2317 RNA-directed DNA polymerase; RNA-directed DNA polymerase complement(3277498..3278970) Shewanella sediminis HAW-EB3 5613174 YP_001474448.1 CDS Ssed_2713 NC_009831.1 3279644 3280129 R KEGG: ppr:PBPRA1446 lactoylglutathione lyase; lactoylglutathione lyase complement(3279644..3280129) Shewanella sediminis HAW-EB3 5611197 YP_001474449.1 CDS Ssed_2714 NC_009831.1 3280216 3280398 R hypothetical protein complement(3280216..3280398) Shewanella sediminis HAW-EB3 5611198 YP_001474450.1 CDS Ssed_2715 NC_009831.1 3280723 3281742 D catalyzes the formation of inosine from adenosine; adenosine deaminase 3280723..3281742 Shewanella sediminis HAW-EB3 5611199 YP_001474451.1 CDS Ssed_2716 NC_009831.1 3282089 3282502 R KEGG: ilo:IL0305 MutT/NUDIX family protein; MutT/NUDIX family protein complement(3282089..3282502) Shewanella sediminis HAW-EB3 5611210 YP_001474452.1 CDS Ssed_2717 NC_009831.1 3282624 3283061 R KEGG: vfi:VFA0662 acetyltransferase; acetyltransferase complement(3282624..3283061) Shewanella sediminis HAW-EB3 5611211 YP_001474453.1 CDS Ssed_2718 NC_009831.1 3283252 3283464 R KEGG: pat:Patl_1948 protein of unknown function DUF1568; hypothetical protein complement(3283252..3283464) Shewanella sediminis HAW-EB3 5611212 YP_001474454.1 CDS Ssed_2719 NC_009831.1 3283759 3284502 D KEGG: sfr:Sfri_1258 hypothetical protein; hypothetical protein 3283759..3284502 Shewanella sediminis HAW-EB3 5611213 YP_001474455.1 CDS Ssed_2720 NC_009831.1 3284507 3285778 R KEGG: cps:CPS_2523 sensor histidine kinase; sensor histidine kinase complement(3284507..3285778) Shewanella sediminis HAW-EB3 5611204 YP_001474456.1 CDS Ssed_2721 NC_009831.1 3285768 3286469 R KEGG: cps:CPS_2524 DNA-binding response regulator; DNA-binding response regulator complement(3285768..3286469) Shewanella sediminis HAW-EB3 5611205 YP_001474457.1 CDS Ssed_2722 NC_009831.1 3286589 3287725 R KEGG: sde:Sde_3438 intracellular protease/amidase-like; intracellular protease/amidase-like protein complement(3286589..3287725) Shewanella sediminis HAW-EB3 5611206 YP_001474458.1 CDS Ssed_2723 NC_009831.1 3287790 3290273 R KEGG: cps:CPS_2526 permease; permease complement(3287790..3290273) Shewanella sediminis HAW-EB3 5611207 YP_001474459.1 CDS Ssed_2724 NC_009831.1 3290273 3290950 R KEGG: cps:CPS_2527 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein complement(3290273..3290950) Shewanella sediminis HAW-EB3 5614104 YP_001474460.1 CDS Ssed_2725 NC_009831.1 3291213 3291671 R hypothetical protein complement(3291213..3291671) Shewanella sediminis HAW-EB3 5614105 YP_001474461.1 CDS Ssed_2726 NC_009831.1 3291996 3292154 R KEGG: pat:Patl_1948 protein of unknown function DUF1568; hypothetical protein complement(3291996..3292154) Shewanella sediminis HAW-EB3 5614106 YP_001474462.1 CDS Ssed_2727 NC_009831.1 3292248 3294071 R KEGG: saz:Sama_1111 ATP-dependent endonuclease of the OLD family; ATP-dependent OLD family endonuclease complement(3292248..3294071) Shewanella sediminis HAW-EB3 5614107 YP_001474463.1 CDS Ssed_2728 NC_009831.1 3294791 3295483 R KEGG: dps:DP1920 hypothetical protein; hypothetical protein complement(3294791..3295483) Shewanella sediminis HAW-EB3 5611239 YP_001474464.1 CDS Ssed_2729 NC_009831.1 3295599 3296162 R KEGG: ppr:PBPRA2808 hypothetical phosphoesterase; phosphodiesterase complement(3295599..3296162) Shewanella sediminis HAW-EB3 5611240 YP_001474465.1 CDS Ssed_2730 NC_009831.1 3296284 3297891 R KEGG: mxa:MXAN_5879 sigma-54 dependent transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(3296284..3297891) Shewanella sediminis HAW-EB3 5611241 YP_001474466.1 CDS Ssed_2731 NC_009831.1 3298578 3300101 D KEGG: eca:ECA0910 flavoprotein subunit of a reductase; flavoprotein subunit of a reductase 3298578..3300101 Shewanella sediminis HAW-EB3 5613810 YP_001474467.1 CDS Ssed_2732 NC_009831.1 3300163 3301068 D KEGG: sat:SYN_00385 hypothetical protein; hypothetical protein 3300163..3301068 Shewanella sediminis HAW-EB3 5613811 YP_001474468.1 CDS Ssed_2733 NC_009831.1 3301602 3302834 D KEGG: vpa:VP1425 alcohol dehydrogenase; alcohol dehydrogenase 3301602..3302834 Shewanella sediminis HAW-EB3 5613812 YP_001474469.1 CDS Ssed_2734 NC_009831.1 3302987 3304051 R KEGG: slo:Shew_2701 hypothetical protein; hypothetical protein complement(3302987..3304051) Shewanella sediminis HAW-EB3 5613813 YP_001474470.1 CDS Ssed_2735 NC_009831.1 3304398 3305462 R KEGG: ppr:PBPRB1179 hypothetical protein; hypothetical protein complement(3304398..3305462) Shewanella sediminis HAW-EB3 5610323 YP_001474471.1 CDS Ssed_2736 NC_009831.1 3305833 3307089 R KEGG: saz:Sama_1472 ABC transporter permease; ABC transporter permease complement(3305833..3307089) Shewanella sediminis HAW-EB3 5610324 YP_001474472.1 CDS Ssed_2737 NC_009831.1 3307086 3308348 R KEGG: saz:Sama_1471 membrane-fusion protein; membrane-fusion protein complement(3307086..3308348) Shewanella sediminis HAW-EB3 5610325 YP_001474473.1 CDS Ssed_2738 NC_009831.1 3308345 3309544 R KEGG: saz:Sama_1470 membrane-fusion protein; membrane-fusion protein complement(3308345..3309544) Shewanella sediminis HAW-EB3 5610326 YP_001474474.1 CDS Ssed_2739 NC_009831.1 3309541 3310572 R KEGG: saz:Sama_1469 multidrug resistance efflux pump-like protein; multidrug resistance efflux pump-like protein complement(3309541..3310572) Shewanella sediminis HAW-EB3 5610151 YP_001474475.1 CDS Ssed_2740 NC_009831.1 3310562 3311248 R KEGG: saz:Sama_1468 macrolide efflux ABC transporter, ATP-binding protein; macrolide efflux ABC transporter ATP-binding protein complement(3310562..3311248) Shewanella sediminis HAW-EB3 5610152 YP_001474476.1 CDS Ssed_2741 NC_009831.1 3311695 3312081 R KEGG: slo:Shew_1747 hypothetical protein; hypothetical protein complement(3311695..3312081) Shewanella sediminis HAW-EB3 5610153 YP_001474477.1 CDS Ssed_2742 NC_009831.1 3312239 3312691 R KEGG: slo:Shew_1746 hypothetical protein; hypothetical protein complement(3312239..3312691) Shewanella sediminis HAW-EB3 5610154 YP_001474478.1 CDS Ssed_2743 NC_009831.1 3312896 3313495 R KEGG: slo:Shew_1744 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3312896..3313495) Shewanella sediminis HAW-EB3 5611136 YP_001474479.1 CDS Ssed_2744 NC_009831.1 3313597 3314124 R KEGG: slo:Shew_1743 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3313597..3314124) Shewanella sediminis HAW-EB3 5611137 YP_001474480.1 CDS Ssed_2745 NC_009831.1 3314183 3314812 D KEGG: slo:Shew_1742 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 3314183..3314812 Shewanella sediminis HAW-EB3 5611138 YP_001474481.1 CDS Ssed_2746 NC_009831.1 3314888 3315622 D KEGG: slo:Shew_1741 beta-lactamase domain protein; beta-lactamase domain-containing protein 3314888..3315622 Shewanella sediminis HAW-EB3 5611139 YP_001474482.1 CDS Ssed_2747 NC_009831.1 3315715 3316263 R KEGG: slo:Shew_1740 nitroreductase; nitroreductase complement(3315715..3316263) Shewanella sediminis HAW-EB3 5613949 YP_001474483.1 CDS Ssed_2748 NC_009831.1 3316393 3316989 R KEGG: sbl:Sbal_1807 DoxX family protein; DoxX family protein complement(3316393..3316989) Shewanella sediminis HAW-EB3 5613950 YP_001474484.1 CDS Ssed_2749 NC_009831.1 3317129 3318166 R KEGG: slo:Shew_1738 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(3317129..3318166) Shewanella sediminis HAW-EB3 5613951 YP_001474485.1 CDS Ssed_2750 NC_009831.1 3318285 3318926 R KEGG: slo:Shew_1737 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC complement(3318285..3318926) Shewanella sediminis HAW-EB3 5611973 YP_001474486.1 CDS Ssed_2751 NC_009831.1 3319029 3319289 R KEGG: sfr:Sfri_1527 hypothetical protein; hypothetical protein complement(3319029..3319289) Shewanella sediminis HAW-EB3 5611974 YP_001474487.1 CDS Ssed_2752 NC_009831.1 3319397 3321607 R KEGG: slo:Shew_1735 TonB-dependent receptor; TonB-dependent receptor complement(3319397..3321607) Shewanella sediminis HAW-EB3 5611975 YP_001474488.1 CDS Ssed_2753 NC_009831.1 3321930 3322322 R KEGG: sbl:Sbal_1801 protein of unknown function DUF1425; hypothetical protein complement(3321930..3322322) Shewanella sediminis HAW-EB3 5611976 YP_001474489.1 CDS Ssed_2754 NC_009831.1 3322376 3323380 R KEGG: spc:Sputcn32_1655 uncharacterized domain 1; hypothetical protein complement(3322376..3323380) Shewanella sediminis HAW-EB3 5611840 YP_001474490.1 CDS Ssed_2755 NC_009831.1 3323397 3323753 R KEGG: shw:Sputw3181_2372 histidine triad (HIT) protein; histidine triad (HIT) protein complement(3323397..3323753) Shewanella sediminis HAW-EB3 5611841 YP_001474491.1 CDS Ssed_2756 NC_009831.1 3324325 3324738 D hypothetical protein 3324325..3324738 Shewanella sediminis HAW-EB3 5611842 YP_001474492.1 CDS Ssed_2757 NC_009831.1 3325128 3325478 R hypothetical protein complement(3325128..3325478) Shewanella sediminis HAW-EB3 5611843 YP_001474493.1 CDS Ssed_2758 NC_009831.1 3325485 3325838 R hypothetical protein complement(3325485..3325838) Shewanella sediminis HAW-EB3 5612007 YP_001474494.1 CDS Ssed_2759 NC_009831.1 3326072 3326707 R KEGG: saz:Sama_1446 response regulator receiver protein; response regulator receiver protein complement(3326072..3326707) Shewanella sediminis HAW-EB3 5612008 YP_001474495.1 CDS Ssed_2760 NC_009831.1 3327028 3328206 R KEGG: sbl:Sbal_1794 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(3327028..3328206) Shewanella sediminis HAW-EB3 5612009 YP_001474496.1 CDS Ssed_2761 NC_009831.1 3328516 3328947 D KEGG: cps:CPS_4793 hypothetical protein; hypothetical protein 3328516..3328947 Shewanella sediminis HAW-EB3 5612010 YP_001474497.1 CDS Ssed_2762 NC_009831.1 3329135 3330955 R KEGG: sfr:Sfri_1512 serine/threonine protein kinase; serine/threonine protein kinase complement(3329135..3330955) Shewanella sediminis HAW-EB3 5612475 YP_001474498.1 CDS Ssed_2763 NC_009831.1 3331042 3332511 R KEGG: sfr:Sfri_1511 nitrite transporter; nitrite transporter complement(3331042..3332511) Shewanella sediminis HAW-EB3 5612476 YP_001474499.1 CDS Ssed_2764 NC_009831.1 3332512 3332847 R KEGG: sfr:Sfri_1510 nitrite reductase (NAD(P)H), small subunit; nitrite reductase (NAD(P)H) small subunit complement(3332512..3332847) Shewanella sediminis HAW-EB3 5612477 YP_001474500.1 CDS Ssed_2765 NC_009831.1 3332844 3335516 R KEGG: sfr:Sfri_1509 nitrite reductase (NAD(P)H), large subunit; nitrite reductase (NAD(P)H) large subunit complement(3332844..3335516) Shewanella sediminis HAW-EB3 5612768 YP_001474501.1 CDS Ssed_2766 NC_009831.1 3335947 3336543 R KEGG: sfr:Sfri_1508 response regulator receiver and ANTAR domain protein; response regulator complement(3335947..3336543) Shewanella sediminis HAW-EB3 5612769 YP_001474502.1 CDS Ssed_2767 NC_009831.1 3336616 3337788 R KEGG: sfr:Sfri_1507 glycosyl transferase, family 3; glycosyl transferase family protein complement(3336616..3337788) Shewanella sediminis HAW-EB3 5612770 YP_001474503.1 CDS Ssed_2768 NC_009831.1 3337785 3338645 R KEGG: sfr:Sfri_1506 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(3337785..3338645) Shewanella sediminis HAW-EB3 5612771 YP_001474504.1 CDS Ssed_2769 NC_009831.1 3338999 3339346 R KEGG: slo:Shew_1724 cytochrome c3; cytochrome c3 complement(3338999..3339346) Shewanella sediminis HAW-EB3 5612612 YP_001474505.1 CDS Ssed_2770 NC_009831.1 3339740 3340603 R metalloprotease; heat shock protein HtpX complement(3339740..3340603) Shewanella sediminis HAW-EB3 5612613 YP_001474506.1 CDS Ssed_2771 NC_009831.1 3340883 3341626 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 3340883..3341626 Shewanella sediminis HAW-EB3 5612614 YP_001474507.1 CDS Ssed_2772 NC_009831.1 3341698 3343692 R KEGG: ppr:PBPRB1892 5'-nucleotidase; 5'-nucleotidase complement(3341698..3343692) Shewanella sediminis HAW-EB3 5612615 YP_001474508.1 CDS Ssed_2773 NC_009831.1 3344237 3344917 R KEGG: shm:Shewmr7_2428 dethiobiotin synthase; dethiobiotin synthase complement(3344237..3344917) Shewanella sediminis HAW-EB3 5612410 YP_001474509.1 CDS Ssed_2774 NC_009831.1 3344928 3345728 R KEGG: shm:Shewmr7_2429 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(3344928..3345728) Shewanella sediminis HAW-EB3 5612411 YP_001474510.1 CDS Ssed_2775 NC_009831.1 3345789 3346979 R KEGG: shm:Shewmr7_2430 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(3345789..3346979) Shewanella sediminis HAW-EB3 5612412 YP_001474511.1 CDS Ssed_2776 NC_009831.1 3347008 3348072 R KEGG: slo:Shew_1719 biotin synthase; biotin synthase complement(3347008..3348072) Shewanella sediminis HAW-EB3 5612413 YP_001474512.1 CDS Ssed_2777 NC_009831.1 3348183 3349550 D KEGG: sfr:Sfri_1474 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3348183..3349550 Shewanella sediminis HAW-EB3 5613090 YP_001474513.1 CDS Ssed_2778 NC_009831.1 3349903 3351261 D KEGG: slo:Shew_2533 gluconate transporter; gluconate transporter 3349903..3351261 Shewanella sediminis HAW-EB3 5613091 YP_001474514.1 CDS Ssed_2779 NC_009831.1 3351379 3352563 D KEGG: son:SO1770 glycerate kinase; glycerate kinase 3351379..3352563 Shewanella sediminis HAW-EB3 5613092 YP_001474515.1 CDS Ssed_2780 NC_009831.1 3352760 3354412 D KEGG: slo:Shew_2535 pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 3352760..3354412 Shewanella sediminis HAW-EB3 5613093 YP_001474516.1 CDS Ssed_2781 NC_009831.1 3354562 3354936 R KEGG: cps:CPS_2228 hypothetical protein; hypothetical protein complement(3354562..3354936) Shewanella sediminis HAW-EB3 5613137 YP_001474517.1 CDS Ssed_2782 NC_009831.1 3355006 3355248 R hypothetical protein complement(3355006..3355248) Shewanella sediminis HAW-EB3 5613138 YP_001474518.1 CDS Ssed_2783 NC_009831.1 3355479 3357551 D KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein; methyl-accepting chemotaxisprotein 3355479..3357551 Shewanella sediminis HAW-EB3 5613139 YP_001474519.1 CDS Ssed_2784 NC_009831.1 3357680 3358990 R KEGG: eca:ECA0799 outer membrane protein; hypothetical protein complement(3357680..3358990) Shewanella sediminis HAW-EB3 5612812 YP_001474520.1 CDS Ssed_2785 NC_009831.1 3359111 3359800 R KEGG: slo:Shew_2541 helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein complement(3359111..3359800) Shewanella sediminis HAW-EB3 5612813 YP_001474521.1 CDS Ssed_2786 NC_009831.1 3359954 3360394 R KEGG: shn:Shewana3_2705 transcription activator, effector binding; transcription activator, effector binding complement(3359954..3360394) Shewanella sediminis HAW-EB3 5612814 YP_001474522.1 CDS Ssed_2787 NC_009831.1 3360453 3360836 R KEGG: son:SO1756 glyoxalase family protein; glyoxalase family protein complement(3360453..3360836) Shewanella sediminis HAW-EB3 5612815 YP_001474523.1 CDS Ssed_2788 NC_009831.1 3360960 3362429 R KEGG: mxa:MXAN_2860 hypothetical protein; hypothetical protein complement(3360960..3362429) Shewanella sediminis HAW-EB3 5613310 YP_001474524.1 CDS Ssed_2789 NC_009831.1 3362558 3363223 R hypothetical protein complement(3362558..3363223) Shewanella sediminis HAW-EB3 5613311 YP_001474525.1 CDS Ssed_2790 NC_009831.1 3363468 3364202 D KEGG: gur:Gura_3331 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 3363468..3364202 Shewanella sediminis HAW-EB3 5613312 YP_001474526.1 CDS Ssed_2791 NC_009831.1 3364202 3366622 D KEGG: gur:Gura_3330 hypothetical protein; hypothetical protein 3364202..3366622 Shewanella sediminis HAW-EB3 5613313 YP_001474527.1 CDS Ssed_2792 NC_009831.1 3366625 3367230 R KEGG: saz:Sama_3519 acetyltransferase including N-acetylase of ribosomal protein; ribosomal protein N-acetylase-like protein complement(3366625..3367230) Shewanella sediminis HAW-EB3 5613434 YP_001474528.1 CDS Ssed_2793 NC_009831.1 3367234 3367866 R KEGG: slo:Shew_1536 chloramphenicol acetyltransferase; chloramphenicol acetyltransferase complement(3367234..3367866) Shewanella sediminis HAW-EB3 5613435 YP_001474529.1 CDS Ssed_2794 NC_009831.1 3368015 3368560 D KEGG: vfi:VFA1053 transcriptional regulator, MerR family; MerR family transcriptional regulator 3368015..3368560 Shewanella sediminis HAW-EB3 5613436 YP_001474530.1 CDS Ssed_2795 NC_009831.1 3368711 3369247 R KEGG: dde:Dde_3171 acetyltransferase; acetyltransferase complement(3368711..3369247) Shewanella sediminis HAW-EB3 5613437 YP_001474531.1 CDS Ssed_2796 NC_009831.1 3369703 3376164 R KEGG: son:SO0189 fibronectin type III domain protein; fibronectin type III domain-containing protein complement(3369703..3376164) Shewanella sediminis HAW-EB3 5613512 YP_001474532.1 CDS Ssed_2797 NC_009831.1 3376978 3377355 R hypothetical protein complement(3376978..3377355) Shewanella sediminis HAW-EB3 5613513 YP_001474533.1 CDS Ssed_2798 NC_009831.1 3377584 3379644 R KEGG: sde:Sde_2352 aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(3377584..3379644) Shewanella sediminis HAW-EB3 5613514 YP_001474534.1 CDS Ssed_2799 NC_009831.1 3379680 3381884 R KEGG: sde:Sde_2353 nitrate reductase; nitrate reductase complement(3379680..3381884) Shewanella sediminis HAW-EB3 5611440 YP_001474535.1 CDS Ssed_2800 NC_009831.1 3382164 3382751 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3382164..3382751 Shewanella sediminis HAW-EB3 5611441 YP_001474536.1 CDS Ssed_2801 NC_009831.1 3383011 3383433 D KEGG: cps:CPS_2500 lipoprotein; lipoprotein 3383011..3383433 Shewanella sediminis HAW-EB3 5611442 YP_001474537.1 CDS codB NC_009831.1 3383966 3385231 D KEGG: vpa:VPA1242 cytosine permease/transport; cytosine permease 3383966..3385231 Shewanella sediminis HAW-EB3 5611443 YP_001474538.1 CDS Ssed_2803 NC_009831.1 3385242 3386537 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3385242..3386537 Shewanella sediminis HAW-EB3 5613638 YP_001474539.1 CDS Ssed_2804 NC_009831.1 3386633 3388453 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3386633..3388453) Shewanella sediminis HAW-EB3 5613639 YP_001474540.1 CDS Ssed_2805 NC_009831.1 3388466 3388918 R KEGG: cps:CPS_0093 hypothetical protein; hypothetical protein complement(3388466..3388918) Shewanella sediminis HAW-EB3 5613640 YP_001474541.1 CDS Ssed_2806 NC_009831.1 3389301 3389792 D KEGG: slo:Shew_0903 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3389301..3389792 Shewanella sediminis HAW-EB3 5613641 YP_001474542.1 CDS Ssed_2807 NC_009831.1 3389880 3390125 D hypothetical protein 3389880..3390125 Shewanella sediminis HAW-EB3 5613624 YP_001474543.1 CDS Ssed_2808 NC_009831.1 3390194 3390685 R KEGG: shn:Shewana3_1718 hypothetical protein; hypothetical protein complement(3390194..3390685) Shewanella sediminis HAW-EB3 5613625 YP_001474544.1 CDS Ssed_2809 NC_009831.1 3390685 3391461 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(3390685..3391461) Shewanella sediminis HAW-EB3 5613626 YP_001474545.1 CDS fur NC_009831.1 3392046 3392477 D negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 3392046..3392477 Shewanella sediminis HAW-EB3 5613627 YP_001474546.1 CDS Ssed_2811 NC_009831.1 3392632 3393504 R KEGG: slo:Shew_1658 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha complement(3392632..3393504) Shewanella sediminis HAW-EB3 5613668 YP_001474547.1 CDS sucC NC_009831.1 3393504 3394670 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3393504..3394670) Shewanella sediminis HAW-EB3 5613669 YP_001474548.1 CDS Ssed_2813 NC_009831.1 3394784 3395971 R KEGG: slo:Shew_1656 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(3394784..3395971) Shewanella sediminis HAW-EB3 5613670 YP_001474549.1 CDS sucA NC_009831.1 3396001 3398823 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(3396001..3398823) Shewanella sediminis HAW-EB3 5613671 YP_001474550.1 CDS sdhB NC_009831.1 3399003 3399710 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(3399003..3399710) Shewanella sediminis HAW-EB3 5614001 YP_001474551.1 CDS sdhA NC_009831.1 3399721 3401487 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3399721..3401487) Shewanella sediminis HAW-EB3 5614002 YP_001474552.1 CDS Ssed_2817 NC_009831.1 3401488 3401835 R KEGG: slo:Shew_1652 conserved hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase, hydrophobic subunit complement(3401488..3401835) Shewanella sediminis HAW-EB3 5614003 YP_001474553.1 CDS Ssed_2818 NC_009831.1 3401829 3402203 R KEGG: slo:Shew_1651 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit complement(3401829..3402203) Shewanella sediminis HAW-EB3 5613961 YP_001474554.1 CDS gltA NC_009831.1 3402633 3403919 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3402633..3403919 Shewanella sediminis HAW-EB3 5613962 YP_001474555.1 CDS Ssed_2820 NC_009831.1 3404485 3405576 D KEGG: slo:Shew_1649 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3404485..3405576 Shewanella sediminis HAW-EB3 5613963 YP_001474556.1 CDS Ssed_2821 NC_009831.1 3405590 3408853 D KEGG: slo:Shew_1648 acriflavin resistance protein; acriflavin resistance protein 3405590..3408853 Shewanella sediminis HAW-EB3 5613964 YP_001474557.1 CDS Ssed_2822 NC_009831.1 3408850 3411933 D KEGG: slo:Shew_1647 acriflavin resistance protein; acriflavin resistance protein 3408850..3411933 Shewanella sediminis HAW-EB3 5613977 YP_001474558.1 CDS Ssed_2823 NC_009831.1 3412072 3412935 D KEGG: slo:Shew_1646 beta-lactamase domain protein; beta-lactamase domain-containing protein 3412072..3412935 Shewanella sediminis HAW-EB3 5613978 YP_001474559.1 CDS Ssed_2824 NC_009831.1 3413044 3413226 R KEGG: slo:Shew_1640 protein of unknown function DUF343; hypothetical protein complement(3413044..3413226) Shewanella sediminis HAW-EB3 5613979 YP_001474560.1 CDS lpxK NC_009831.1 3413259 3414272 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(3413259..3414272) Shewanella sediminis HAW-EB3 5613980 YP_001474561.1 CDS Ssed_2826 NC_009831.1 3414273 3416087 R KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; ABC transporter, ATP-binding protein MsbA complement(3414273..3416087) Shewanella sediminis HAW-EB3 5613887 YP_001474562.1 CDS Ssed_2827 NC_009831.1 3416120 3418423 R KEGG: sbl:Sbal_1682 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(3416120..3418423) Shewanella sediminis HAW-EB3 5613888 YP_001474563.1 CDS Ssed_2828 NC_009831.1 3418482 3418961 D KEGG: slo:Shew_1636 hypothetical protein; hypothetical protein 3418482..3418961 Shewanella sediminis HAW-EB3 5613889 YP_001474564.1 CDS Ssed_2829 NC_009831.1 3419126 3420385 R KEGG: slo:Shew_1634 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(3419126..3420385) Shewanella sediminis HAW-EB3 5613890 YP_001474565.1 CDS Ssed_2830 NC_009831.1 3420382 3421077 R KEGG: sbl:Sbal_2403 lipoprotein releasing system, ATP-binding protein; lipoprotein releasing system, ATP-binding protein complement(3420382..3421077) Shewanella sediminis HAW-EB3 5613661 YP_001474566.1 CDS Ssed_2831 NC_009831.1 3421203 3422453 R KEGG: slo:Shew_1632 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(3421203..3422453) Shewanella sediminis HAW-EB3 5613662 YP_001474567.1 CDS Ssed_2832 NC_009831.1 3422533 3423138 D KEGG: she:Shewmr4_1731 hypothetical protein; hypothetical protein 3422533..3423138 Shewanella sediminis HAW-EB3 5613663 YP_001474568.1 CDS Ssed_2833 NC_009831.1 3423275 3426748 D KEGG: slo:Shew_1630 transcription-repair coupling factor; transcription-repair coupling factor 3423275..3426748 Shewanella sediminis HAW-EB3 5613537 YP_001474569.1 CDS Ssed_2834 NC_009831.1 3426750 3427697 D KEGG: slo:Shew_1629 hypothetical protein; hypothetical protein 3426750..3427697 Shewanella sediminis HAW-EB3 5613538 YP_001474570.1 CDS Ssed_2835 NC_009831.1 3427828 3428103 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(3427828..3428103) Shewanella sediminis HAW-EB3 5613539 YP_001474571.1 CDS Ssed_2836 NC_009831.1 3428622 3429161 R KEGG: slo:Shew_1627 protein of unknown function UPF0227; hypothetical protein complement(3428622..3429161) Shewanella sediminis HAW-EB3 5613540 YP_001474572.1 CDS Ssed_2837 NC_009831.1 3429254 3430255 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(3429254..3430255) Shewanella sediminis HAW-EB3 5613179 YP_001474573.1 CDS Ssed_2838 NC_009831.1 3430588 3431964 D KEGG: slo:Shew_1625 L-serine dehydratase 1; L-serine ammonia-lyase 3430588..3431964 Shewanella sediminis HAW-EB3 5613180 YP_001474574.1 CDS cysB NC_009831.1 3432085 3433059 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(3432085..3433059) Shewanella sediminis HAW-EB3 5613181 YP_001474575.1 CDS Ssed_2840 NC_009831.1 3433283 3434056 D KEGG: son:SO2650 hypothetical protein; hypothetical protein 3433283..3434056 Shewanella sediminis HAW-EB3 5613182 YP_001474576.1 CDS Ssed_2841 NC_009831.1 3434354 3437023 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(3434354..3437023) Shewanella sediminis HAW-EB3 5610453 YP_001474577.1 CDS Ssed_2842 NC_009831.1 3437553 3438890 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 3437553..3438890 Shewanella sediminis HAW-EB3 5610454 YP_001474578.1 CDS Ssed_2843 NC_009831.1 3438969 3441485 R KEGG: sfr:Sfri_2480 Ig domain protein, group 1 domain protein; Ig domain-containing protein complement(3438969..3441485) Shewanella sediminis HAW-EB3 5610455 YP_001474579.1 CDS Ssed_2844 NC_009831.1 3441702 3443012 D KEGG: sbl:Sbal_2499 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 3441702..3443012 Shewanella sediminis HAW-EB3 5610456 YP_001474580.1 CDS Ssed_2845 NC_009831.1 3443161 3444465 R KEGG: slo:Shew_2228 inosine kinase; inosine kinase complement(3443161..3444465) Shewanella sediminis HAW-EB3 5612446 YP_001474581.1 CDS hemH NC_009831.1 3444642 3445649 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(3444642..3445649) Shewanella sediminis HAW-EB3 5612447 YP_001474582.1 CDS adk NC_009831.1 3445828 3446472 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3445828..3446472) Shewanella sediminis HAW-EB3 5612448 YP_001474583.1 CDS Ssed_2848 NC_009831.1 3446671 3447516 R KEGG: slo:Shew_2231 thioredoxin domain protein; thioredoxin domain-containing protein complement(3446671..3447516) Shewanella sediminis HAW-EB3 5612449 YP_001474584.1 CDS Ssed_2849 NC_009831.1 3447640 3449556 R molecular chaperone; heat shock protein 90 complement(3447640..3449556) Shewanella sediminis HAW-EB3 5612805 YP_001474585.1 CDS recR NC_009831.1 3449753 3450352 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(3449753..3450352) Shewanella sediminis HAW-EB3 5612806 YP_001474586.1 CDS Ssed_2851 NC_009831.1 3450365 3450694 R KEGG: slo:Shew_2234 conserved hypothetical protein 103; hypothetical protein complement(3450365..3450694) Shewanella sediminis HAW-EB3 5612807 YP_001474587.1 CDS Ssed_2852 NC_009831.1 3450779 3453646 R KEGG: slo:Shew_2235 DNA polymerase III, subunits gamma and tau; DNA-directed DNA polymerase complement(3450779..3453646) Shewanella sediminis HAW-EB3 5612927 YP_001474588.1 CDS Ssed_2853 NC_009831.1 3453756 3454310 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3453756..3454310) Shewanella sediminis HAW-EB3 5612928 YP_001474589.1 CDS Ssed_2854 NC_009831.1 3454526 3454945 R KEGG: slo:Shew_2237 protein of unknown function DUF454; hypothetical protein complement(3454526..3454945) Shewanella sediminis HAW-EB3 5612929 YP_001474590.1 CDS Ssed_2855 NC_009831.1 3455500 3455619 R KEGG: sfr:Sfri_2410 hypothetical protein; hypothetical protein complement(3455500..3455619) Shewanella sediminis HAW-EB3 5612930 YP_001474591.1 CDS Ssed_2856 NC_009831.1 3455780 3456523 R KEGG: sdn:Sden_2385 hypothetical protein; hypothetical protein complement(3455780..3456523) Shewanella sediminis HAW-EB3 5614171 YP_001474592.1 CDS Ssed_2857 NC_009831.1 3456523 3457359 R KEGG: sfr:Sfri_2412 protein of unknown function DUF692; hypothetical protein complement(3456523..3457359) Shewanella sediminis HAW-EB3 5614172 YP_001474593.1 CDS Ssed_2858 NC_009831.1 3457533 3458078 R KEGG: slo:Shew_2241 hypothetical protein; hypothetical protein complement(3457533..3458078) Shewanella sediminis HAW-EB3 5614173 YP_001474594.1 CDS Ssed_2859 NC_009831.1 3458650 3459576 D KEGG: slo:Shew_2242 dihydrouridine synthase, DuS; dihydrouridine synthase, DuS 3458650..3459576 Shewanella sediminis HAW-EB3 5614174 YP_001474595.1 CDS Ssed_2860 NC_009831.1 3459794 3460150 D KEGG: slo:Shew_2243 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 3459794..3460150 Shewanella sediminis HAW-EB3 5611622 YP_001474596.1 CDS Ssed_2861 NC_009831.1 3460303 3462924 R KEGG: sfr:Sfri_2416 TonB-dependent receptor; TonB-dependent receptor complement(3460303..3462924) Shewanella sediminis HAW-EB3 5611623 YP_001474597.1 CDS ndk NC_009831.1 3463824 3464255 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3463824..3464255) Shewanella sediminis HAW-EB3 5611624 YP_001474598.1 CDS Ssed_2863 NC_009831.1 3464544 3464789 R KEGG: slo:Shew_2311 protein of unknown function DUF528; hypothetical protein complement(3464544..3464789) Shewanella sediminis HAW-EB3 5611625 YP_001474599.1 CDS Ssed_2864 NC_009831.1 3464986 3466137 R KEGG: syn:slr2100 two-component response regulator; two-component response regulator complement(3464986..3466137) Shewanella sediminis HAW-EB3 5613342 YP_001474600.1 CDS Ssed_2865 NC_009831.1 3466109 3472750 R KEGG: mgm:Mmc1_3164 multi-sensor hybrid histidine kinase; Signal transduction histidine kinase-like protein complement(3466109..3472750) Shewanella sediminis HAW-EB3 5613343 YP_001474601.1 CDS Ssed_2866 NC_009831.1 3473317 3473655 R KEGG: saz:Sama_1298 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S complement(3473317..3473655) Shewanella sediminis HAW-EB3 5613344 YP_001474602.1 CDS hscA NC_009831.1 3473673 3475535 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(3473673..3475535) Shewanella sediminis HAW-EB3 5610581 YP_001474603.1 CDS hscB NC_009831.1 3475616 3476146 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(3475616..3476146) Shewanella sediminis HAW-EB3 5610582 YP_001474604.1 CDS Ssed_2869 NC_009831.1 3476166 3476489 R KEGG: slo:Shew_2315 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(3476166..3476489) Shewanella sediminis HAW-EB3 5610583 YP_001474605.1 CDS Ssed_2870 NC_009831.1 3476504 3476887 R KEGG: shn:Shewana3_2279 FeS cluster assembly scaffold IscU; scaffold protein complement(3476504..3476887) Shewanella sediminis HAW-EB3 5610584 YP_001474606.1 CDS Ssed_2871 NC_009831.1 3476924 3478138 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(3476924..3478138) Shewanella sediminis HAW-EB3 5611785 YP_001474607.1 CDS Ssed_2872 NC_009831.1 3478214 3478675 R KEGG: slo:Shew_2318 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(3478214..3478675) Shewanella sediminis HAW-EB3 5611786 YP_001474608.1 CDS Ssed_2873 NC_009831.1 3478894 3479715 R KEGG: slo:Shew_2319 serine O-acetyltransferase; Serine O-acetyltransferase complement(3478894..3479715) Shewanella sediminis HAW-EB3 5611787 YP_001474609.1 CDS Ssed_2874 NC_009831.1 3479730 3480494 R KEGG: slo:Shew_2320 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase complement(3479730..3480494) Shewanella sediminis HAW-EB3 5611788 YP_001474610.1 CDS Ssed_2875 NC_009831.1 3480844 3481647 D KEGG: slo:Shew_2321 inositol monophosphatase; inositol-phosphate phosphatase 3480844..3481647 Shewanella sediminis HAW-EB3 5611329 YP_001474611.1 CDS Ssed_2876 NC_009831.1 3481832 3483052 D KEGG: slo:Shew_2322 NnrS family protein; NnrS family protein 3481832..3483052 Shewanella sediminis HAW-EB3 5611330 YP_001474612.1 CDS Ssed_2877 NC_009831.1 3483351 3483755 D KEGG: slo:Shew_2323 phosphate-starvation-inducible E; phosphate-starvation-inducible E 3483351..3483755 Shewanella sediminis HAW-EB3 5611331 YP_001474613.1 CDS Ssed_2878 NC_009831.1 3483907 3484221 D KEGG: slo:Shew_2324 type IV pilus assembly PilZ; type IV pilus assembly PilZ 3483907..3484221 Shewanella sediminis HAW-EB3 5611332 YP_001474614.1 CDS Ssed_2879 NC_009831.1 3484322 3484990 D KEGG: slo:Shew_2325 hypothetical protein; hypothetical protein 3484322..3484990 Shewanella sediminis HAW-EB3 5610220 YP_001474615.1 CDS Ssed_2880 NC_009831.1 3484977 3485327 D KEGG: slo:Shew_2326 RepA domain protein; RepA domain-containing protein 3484977..3485327 Shewanella sediminis HAW-EB3 5610221 YP_001474616.1 CDS Ssed_2881 NC_009831.1 3485390 3485632 R KEGG: sfr:Sfri_1783 hypothetical protein; hypothetical protein complement(3485390..3485632) Shewanella sediminis HAW-EB3 5610222 YP_001474617.1 CDS Ssed_2882 NC_009831.1 3485795 3487471 D KEGG: shn:Shewana3_2593 signal transduction histidine kinase, LytS; signal transduction histidine kinase LytS 3485795..3487471 Shewanella sediminis HAW-EB3 5610223 YP_001474618.1 CDS Ssed_2883 NC_009831.1 3487468 3488178 D unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 3487468..3488178 Shewanella sediminis HAW-EB3 5613358 YP_001474619.1 CDS Ssed_2884 NC_009831.1 3488432 3489868 D KEGG: slo:Shew_2330 carbon starvation protein CstA; carbon starvation protein CstA 3488432..3489868 Shewanella sediminis HAW-EB3 5613359 YP_001474620.1 CDS Ssed_2885 NC_009831.1 3489956 3490495 R KEGG: slo:Shew_2331 YaeQ family protein; YaeQ family protein complement(3489956..3490495) Shewanella sediminis HAW-EB3 5613360 YP_001474621.1 CDS Ssed_2886 NC_009831.1 3490599 3491510 R KEGG: son:SO3108 precorrin-2 oxidase / ferrochelatase; precorrin-2 oxidase/ferrochelatase complement(3490599..3491510) Shewanella sediminis HAW-EB3 5613101 YP_001474622.1 CDS Ssed_2887 NC_009831.1 3491588 3491947 R KEGG: saz:Sama_2188 rhodanese-like protein; rhodanese-like protein complement(3491588..3491947) Shewanella sediminis HAW-EB3 5613102 YP_001474623.1 CDS Ssed_2888 NC_009831.1 3492017 3492334 R KEGG: slo:Shew_2333 hypothetical protein; hypothetical protein complement(3492017..3492334) Shewanella sediminis HAW-EB3 5613103 YP_001474624.1 CDS secF NC_009831.1 3492537 3493484 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3492537..3493484) Shewanella sediminis HAW-EB3 5613104 YP_001474625.1 CDS secD NC_009831.1 3493497 3495347 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3493497..3495347) Shewanella sediminis HAW-EB3 5611242 YP_001474626.1 CDS yajC NC_009831.1 3495365 3495697 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(3495365..3495697) Shewanella sediminis HAW-EB3 5611243 YP_001474627.1 CDS tgt NC_009831.1 3495727 3496860 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(3495727..3496860) Shewanella sediminis HAW-EB3 5611244 YP_001474628.1 CDS queA NC_009831.1 3497033 3498070 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(3497033..3498070) Shewanella sediminis HAW-EB3 5611245 YP_001474629.1 CDS Ssed_2894 NC_009831.1 3498142 3498303 R KEGG: shn:Shewana3_1433 hypothetical protein; hypothetical protein complement(3498142..3498303) Shewanella sediminis HAW-EB3 5611985 YP_001474630.1 CDS Ssed_2895 NC_009831.1 3498464 3499057 D KEGG: slo:Shew_2339 protein of unknown function DUF479; hypothetical protein 3498464..3499057 Shewanella sediminis HAW-EB3 5611986 YP_001474631.1 CDS Ssed_2896 NC_009831.1 3499151 3499807 D KEGG: slo:Shew_1460 pseudouridine synthase; pseudouridine synthase 3499151..3499807 Shewanella sediminis HAW-EB3 5611987 YP_001474632.1 CDS Ssed_2897 NC_009831.1 3499926 3500327 R KEGG: slo:Shew_1459 hypothetical protein; hypothetical protein complement(3499926..3500327) Shewanella sediminis HAW-EB3 5611988 YP_001474633.1 CDS Ssed_2898 NC_009831.1 3500864 3502102 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(3500864..3502102) Shewanella sediminis HAW-EB3 5613814 YP_001474634.1 CDS Ssed_2899 NC_009831.1 3502489 3503376 R KEGG: slo:Shew_1457 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein complement(3502489..3503376) Shewanella sediminis HAW-EB3 5613815 YP_001474635.1 CDS Ssed_2900 NC_009831.1 3503470 3504993 R KEGG: slo:Shew_1456 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(3503470..3504993) Shewanella sediminis HAW-EB3 5613816 YP_001474636.1 CDS Ssed_2901 NC_009831.1 3505145 3505615 R KEGG: shw:Sputw3181_1514 dual specificity protein phosphatase; dual specificity protein phosphatase complement(3505145..3505615) Shewanella sediminis HAW-EB3 5613817 YP_001474637.1 CDS Ssed_2902 NC_009831.1 3505708 3507006 R KEGG: sfr:Sfri_2710 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(3505708..3507006) Shewanella sediminis HAW-EB3 5609969 YP_001474638.1 CDS Ssed_2903 NC_009831.1 3507146 3507760 R KEGG: shw:Sputw3181_1512 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(3507146..3507760) Shewanella sediminis HAW-EB3 5609970 YP_001474639.1 CDS Ssed_2904 NC_009831.1 3507757 3509265 R KEGG: shn:Shewana3_1420 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3507757..3509265) Shewanella sediminis HAW-EB3 5609971 YP_001474640.1 CDS Ssed_2905 NC_009831.1 3509445 3511274 D KEGG: slo:Shew_1451 ABC transporter-related protein; ABC transporter-like protein 3509445..3511274 Shewanella sediminis HAW-EB3 5610135 YP_001474641.1 CDS gltX NC_009831.1 3513868 3515277 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(3513868..3515277) Shewanella sediminis HAW-EB3 5610569 YP_001474642.1 CDS Ssed_2907 NC_009831.1 3516874 3517101 D KEGG: sbl:Sbal_2803 hypothetical protein; hypothetical protein 3516874..3517101 Shewanella sediminis HAW-EB3 5610637 YP_001474643.1 CDS Ssed_2908 NC_009831.1 3517496 3518530 D KEGG: slo:Shew_1446 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 3517496..3518530 Shewanella sediminis HAW-EB3 5610138 YP_001474644.1 CDS Ssed_2909 NC_009831.1 3518607 3519311 D KEGG: shn:Shewana3_1415 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter, DctQ component 3518607..3519311 Shewanella sediminis HAW-EB3 5610021 YP_001474645.1 CDS Ssed_2910 NC_009831.1 3519311 3520708 D KEGG: sfr:Sfri_2717 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 3519311..3520708 Shewanella sediminis HAW-EB3 5610022 YP_001474646.1 CDS Ssed_2911 NC_009831.1 3520824 3522665 D KEGG: shn:Shewana3_1413 ATP-binding region, ATPase domain protein domain protein; ATPase domain-containing protein 3520824..3522665 Shewanella sediminis HAW-EB3 5610023 YP_001474647.1 CDS Ssed_2912 NC_009831.1 3522652 3524019 D KEGG: slo:Shew_1442 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 3522652..3524019 Shewanella sediminis HAW-EB3 5610024 YP_001474648.1 CDS Ssed_2913 NC_009831.1 3524067 3525350 R KEGG: slo:Shew_1441 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3524067..3525350) Shewanella sediminis HAW-EB3 5609936 YP_001474649.1 CDS Ssed_2914 NC_009831.1 3525505 3526392 D KEGG: sbl:Sbal_2815 transcriptional regulator, LysR family; LysR family transcriptional regulator 3525505..3526392 Shewanella sediminis HAW-EB3 5609937 YP_001474650.1 CDS Ssed_2915 NC_009831.1 3526421 3529528 R KEGG: slo:Shew_3565 acriflavin resistance protein; acriflavin resistance protein complement(3526421..3529528) Shewanella sediminis HAW-EB3 5609938 YP_001474651.1 CDS Ssed_2916 NC_009831.1 3529525 3530874 R KEGG: slo:Shew_3566 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(3529525..3530874) Shewanella sediminis HAW-EB3 5609939 YP_001474652.1 CDS Ssed_2917 NC_009831.1 3530864 3531520 R KEGG: slo:Shew_3567 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3530864..3531520) Shewanella sediminis HAW-EB3 5609703 YP_001474653.1 CDS Ssed_2918 NC_009831.1 3532026 3533435 R KEGG: pfl:PFL_2837 TPR domain protein; hypothetical protein complement(3532026..3533435) Shewanella sediminis HAW-EB3 5609704 YP_001474654.1 CDS Ssed_2919 NC_009831.1 3533607 3534572 R KEGG: slo:Shew_0917 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3533607..3534572) Shewanella sediminis HAW-EB3 5609705 YP_001474655.1 CDS Ssed_2920 NC_009831.1 3534696 3535151 R KEGG: sfr:Sfri_3125 hypothetical protein; hypothetical protein complement(3534696..3535151) Shewanella sediminis HAW-EB3 5609706 YP_001474656.1 CDS Ssed_2921 NC_009831.1 3535170 3535826 R KEGG: sfr:Sfri_3126 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(3535170..3535826) Shewanella sediminis HAW-EB3 5610257 YP_001474657.1 CDS Ssed_2922 NC_009831.1 3535889 3536524 R KEGG: sfr:Sfri_3127 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(3535889..3536524) Shewanella sediminis HAW-EB3 5610258 YP_001474658.1 CDS Ssed_2923 NC_009831.1 3536537 3538969 R KEGG: sfr:Sfri_3128 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein; anaerobic dimethyl sulfoxide reductase subunit A complement(3536537..3538969) Shewanella sediminis HAW-EB3 5610259 YP_001474659.1 CDS Ssed_2924 NC_009831.1 3539007 3541025 R KEGG: sfr:Sfri_3129 outer membrane protein; outer membrane protein complement(3539007..3541025) Shewanella sediminis HAW-EB3 5613504 YP_001474660.1 CDS Ssed_2925 NC_009831.1 3541041 3541988 R KEGG: sfr:Sfri_3130 cytochrome c family protein; cytochrome c family protein complement(3541041..3541988) Shewanella sediminis HAW-EB3 5613505 YP_001474661.1 CDS Ssed_2926 NC_009831.1 3542980 3543645 R KEGG: shn:Shewana3_2777 response regulator receiver protein; response regulator receiver protein complement(3542980..3543645) Shewanella sediminis HAW-EB3 5613506 YP_001474662.1 CDS Ssed_2927 NC_009831.1 3543723 3544709 R KEGG: sbl:Sbal_1487 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(3543723..3544709) Shewanella sediminis HAW-EB3 5613507 YP_001474663.1 CDS Ssed_2928 NC_009831.1 3544948 3546486 R KEGG: slo:Shew_1437 transcriptional regulator, TyrR; transcriptional regulator TyrR complement(3544948..3546486) Shewanella sediminis HAW-EB3 5609860 YP_001474664.1 CDS phhB NC_009831.1 3546715 3547047 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3546715..3547047) Shewanella sediminis HAW-EB3 5609861 YP_001474665.1 CDS phhA NC_009831.1 3547107 3547904 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(3547107..3547904) Shewanella sediminis HAW-EB3 5609862 YP_001474666.1 CDS Ssed_2931 NC_009831.1 3548201 3549121 D KEGG: shw:Sputw3181_2716 UTP-glucose-1-phosphate uridylyltransferase GalU; UTP-glucose-1-phosphate uridylyltransferase 3548201..3549121 Shewanella sediminis HAW-EB3 5609863 YP_001474667.1 CDS Ssed_2932 NC_009831.1 3549121 3550134 D KEGG: shn:Shewana3_2783 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 3549121..3550134 Shewanella sediminis HAW-EB3 5610902 YP_001474668.1 CDS Ssed_2933 NC_009831.1 3550253 3550741 D KEGG: slo:Shew_1432 ferredoxin-type protein NapF; ferredoxin-type protein NapF 3550253..3550741 Shewanella sediminis HAW-EB3 5610903 YP_001474669.1 CDS Ssed_2934 NC_009831.1 3550884 3551279 D KEGG: slo:Shew_1431 protein of unknown function DUF583; hypothetical protein 3550884..3551279 Shewanella sediminis HAW-EB3 5610904 YP_001474670.1 CDS Ssed_2935 NC_009831.1 3551442 3552119 R KEGG: sbl:Sbal_1477 hypothetical protein; hypothetical protein complement(3551442..3552119) Shewanella sediminis HAW-EB3 5610905 YP_001474671.1 CDS Ssed_2936 NC_009831.1 3552166 3552921 R KEGG: slo:Shew_1429 protein of unknown function DUF218; hypothetical protein complement(3552166..3552921) Shewanella sediminis HAW-EB3 5610958 YP_001474672.1 CDS Ssed_2937 NC_009831.1 3552960 3553850 R catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase complement(3552960..3553850) Shewanella sediminis HAW-EB3 5610959 YP_001474673.1 CDS Ssed_2938 NC_009831.1 3554237 3555700 D KEGG: slo:Shew_1426 hypothetical protein; hypothetical protein 3554237..3555700 Shewanella sediminis HAW-EB3 5610960 YP_001474674.1 CDS Ssed_2939 NC_009831.1 3556036 3556776 R KEGG: sfr:Sfri_3709 PHP C-terminal domain protein; hydrolase complement(3556036..3556776) Shewanella sediminis HAW-EB3 5610961 YP_001474675.1 CDS Ssed_2940 NC_009831.1 3556848 3558350 R KEGG: shn:Shewana3_2016 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(3556848..3558350) Shewanella sediminis HAW-EB3 5610788 YP_001474676.1 CDS Ssed_2941 NC_009831.1 3558416 3561925 R KEGG: shn:Shewana3_2015 PAS/PAC sensor protein; PAS/PAC sensor protein complement(3558416..3561925) Shewanella sediminis HAW-EB3 5610789 YP_001474677.1 CDS Ssed_2942 NC_009831.1 3561925 3562845 R KEGG: shn:Shewana3_2014 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(3561925..3562845) Shewanella sediminis HAW-EB3 5610790 YP_001474678.1 CDS Ssed_2943 NC_009831.1 3563255 3564667 D KEGG: shn:Shewana3_2013 response regulator receiver modulated serine phosphatase; response regulator receiver modulated serine phosphatase 3563255..3564667 Shewanella sediminis HAW-EB3 5610681 YP_001474679.1 CDS Ssed_2944 NC_009831.1 3564712 3565104 D KEGG: shn:Shewana3_2012 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor, serine/threonine protein kinase 3564712..3565104 Shewanella sediminis HAW-EB3 5610682 YP_001474680.1 CDS Ssed_2945 NC_009831.1 3566021 3566362 D KEGG: shn:Shewana3_2011 anti-sigma-factor antagonist; anti-sigma-factor antagonist 3566021..3566362 Shewanella sediminis HAW-EB3 5610683 YP_001474681.1 CDS Ssed_2946 NC_009831.1 3566488 3567807 D KEGG: shn:Shewana3_2010 polysaccharide export protein; polysaccharide export protein 3566488..3567807 Shewanella sediminis HAW-EB3 5610684 YP_001474682.1 CDS Ssed_2947 NC_009831.1 3567842 3569251 D KEGG: shn:Shewana3_2009 hypothetical protein; hypothetical protein 3567842..3569251 Shewanella sediminis HAW-EB3 5610670 YP_001474683.1 CDS Ssed_2948 NC_009831.1 3569698 3570945 D KEGG: shn:Shewana3_2008 hypothetical protein; hypothetical protein 3569698..3570945 Shewanella sediminis HAW-EB3 5610671 YP_001474684.1 CDS Ssed_2949 NC_009831.1 3571540 3572907 D KEGG: shn:Shewana3_2007 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3571540..3572907 Shewanella sediminis HAW-EB3 5610672 YP_001474685.1 CDS Ssed_2950 NC_009831.1 3572897 3573940 D KEGG: shn:Shewana3_2006 glycosyl transferase, family 2; glycosyl transferase family protein 3572897..3573940 Shewanella sediminis HAW-EB3 5610673 YP_001474686.1 CDS Ssed_2951 NC_009831.1 3574488 3576638 D KEGG: shn:Shewana3_2005 glycosyl transferase, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase 3574488..3576638 Shewanella sediminis HAW-EB3 5610685 YP_001474687.1 CDS Ssed_2952 NC_009831.1 3576695 3578212 D KEGG: shn:Shewana3_2004 nucleotidyl transferase; nucleotidyl transferase 3576695..3578212 Shewanella sediminis HAW-EB3 5610686 YP_001474688.1 CDS Ssed_2953 NC_009831.1 3578303 3578698 D KEGG: shn:Shewana3_2003 glycerol-3-phosphate cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase 3578303..3578698 Shewanella sediminis HAW-EB3 5610687 YP_001474689.1 CDS Ssed_2954 NC_009831.1 3578713 3580023 D KEGG: sbl:Sbal_2320 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; poly(glycerophosphate) glycerophosphotransferase 3578713..3580023 Shewanella sediminis HAW-EB3 5610688 YP_001474690.1 CDS Ssed_2955 NC_009831.1 3579994 3580920 R KEGG: sbl:Sbal_2866 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(3579994..3580920) Shewanella sediminis HAW-EB3 5610654 YP_001474691.1 CDS Ssed_2956 NC_009831.1 3581095 3582060 R KEGG: vfi:VF0200 acetyltransferase; acetyltransferase complement(3581095..3582060) Shewanella sediminis HAW-EB3 5610655 YP_001474692.1 CDS Ssed_2957 NC_009831.1 3582264 3582950 R KEGG: pin:Ping_0800 adenylyl-sulfate kinase; adenylylsulfate kinase complement(3582264..3582950) Shewanella sediminis HAW-EB3 5610656 YP_001474693.1 CDS Ssed_2958 NC_009831.1 3583014 3583367 R KEGG: vfi:VF0163 hypothetical protein; hypothetical protein complement(3583014..3583367) Shewanella sediminis HAW-EB3 5610657 YP_001474694.1 CDS Ssed_2959 NC_009831.1 3583856 3585583 R KEGG: slo:Shew_1424 TrkA-C domain protein; TrkA domain-containing protein complement(3583856..3585583) Shewanella sediminis HAW-EB3 5610623 YP_001474695.1 CDS Ssed_2960 NC_009831.1 3585845 3587266 R KEGG: slo:Shew_1423 sulfate adenylyltransferase, large subunit; sulfate adenylyltransferase complement(3585845..3587266) Shewanella sediminis HAW-EB3 5610624 YP_001474696.1 CDS Ssed_2961 NC_009831.1 3587486 3588391 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3587486..3588391) Shewanella sediminis HAW-EB3 5610625 YP_001474697.1 CDS Ssed_2962 NC_009831.1 3588993 3590573 D KEGG: sfr:Sfri_2820 beta-lactamase domain protein; beta-lactamase domain-containing protein 3588993..3590573 Shewanella sediminis HAW-EB3 5610619 YP_001474698.1 CDS Ssed_2963 NC_009831.1 3591027 3592226 D hypothetical protein 3591027..3592226 Shewanella sediminis HAW-EB3 5610620 YP_001474699.1 CDS Ssed_2964 NC_009831.1 3592353 3593267 R KEGG: msu:MS1496 RfaG protein; hypothetical protein complement(3592353..3593267) Shewanella sediminis HAW-EB3 5610621 YP_001474700.1 CDS Ssed_2965 NC_009831.1 3593301 3593987 R KEGG: pgi:PG0119 glycosyl transferase, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase complement(3593301..3593987) Shewanella sediminis HAW-EB3 5610622 YP_001474701.1 CDS Ssed_2966 NC_009831.1 3594084 3595223 R KEGG: eca:ECA4208 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(3594084..3595223) Shewanella sediminis HAW-EB3 5613743 YP_001474702.1 CDS Ssed_2967 NC_009831.1 3595649 3596749 R KEGG: tdn:Tmden_1418 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(3595649..3596749) Shewanella sediminis HAW-EB3 5613744 YP_001474703.1 CDS Ssed_2968 NC_009831.1 3596838 3597374 R KEGG: acb:A1S_0057 capsular polysaccharide synthesis enzyme; acetyltransferase complement(3596838..3597374) Shewanella sediminis HAW-EB3 5613745 YP_001474704.1 CDS Ssed_2969 NC_009831.1 3597371 3598720 R KEGG: mxa:MXAN_3260 hypothetical protein; O-antigen and teichoic acid-like export protein complement(3597371..3598720) Shewanella sediminis HAW-EB3 5613746 YP_001474705.1 CDS Ssed_2970 NC_009831.1 3598720 3599820 R KEGG: saz:Sama_2257 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS family protein complement(3598720..3599820) Shewanella sediminis HAW-EB3 5610546 YP_001474706.1 CDS Ssed_2971 NC_009831.1 3599826 3600404 R KEGG: saz:Sama_2258 acetyltransferase; acetyltransferase complement(3599826..3600404) Shewanella sediminis HAW-EB3 5610547 YP_001474707.1 CDS Ssed_2972 NC_009831.1 3600475 3601419 R KEGG: msu:MS1500 MviM protein; MviM protein complement(3600475..3601419) Shewanella sediminis HAW-EB3 5610548 YP_001474708.1 CDS Ssed_2973 NC_009831.1 3601422 3602693 R KEGG: saz:Sama_2260 UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase complement(3601422..3602693) Shewanella sediminis HAW-EB3 5610549 YP_001474709.1 CDS Ssed_2974 NC_009831.1 3602758 3604059 R KEGG: bca:BCE_0978 hypothetical protein; hypothetical protein complement(3602758..3604059) Shewanella sediminis HAW-EB3 5613547 YP_001474710.1 CDS Ssed_2975 NC_009831.1 3604078 3605031 R KEGG: cps:CPS_2090 chain length determinant family protein; chain length determinant family protein complement(3604078..3605031) Shewanella sediminis HAW-EB3 5613548 YP_001474711.1 CDS Ssed_2976 NC_009831.1 3605078 3605530 R KEGG: pfa:MAL8P1.133 hypothetical protein, conserved; hypothetical protein complement(3605078..3605530) Shewanella sediminis HAW-EB3 5613549 YP_001474712.1 CDS Ssed_2977 NC_009831.1 3605527 3606009 R KEGG: dre:450072 zgc:101623; hypothetical protein complement(3605527..3606009) Shewanella sediminis HAW-EB3 5613550 YP_001474713.1 CDS Ssed_2978 NC_009831.1 3606158 3607231 R KEGG: nmu:Nmul_A0253 glycosyl transferase, group 1; glycosyltransferase-like protein complement(3606158..3607231) Shewanella sediminis HAW-EB3 5610554 YP_001474714.1 CDS Ssed_2979 NC_009831.1 3607221 3608747 R KEGG: hch:HCH_03412 hypothetical protein; hypothetical protein complement(3607221..3608747) Shewanella sediminis HAW-EB3 5610555 YP_001474715.1 CDS Ssed_2980 NC_009831.1 3608807 3609760 R KEGG: hch:HCH_05271 glycosyltransferase involved in cell wall biogenesis; cell wall biosynthesis glycosyltransferase-like protein complement(3608807..3609760) Shewanella sediminis HAW-EB3 5610556 YP_001474716.1 CDS Ssed_2981 NC_009831.1 3609753 3610916 R KEGG: det:DET0213 hypothetical protein; hypothetical protein complement(3609753..3610916) Shewanella sediminis HAW-EB3 5610536 YP_001474717.1 CDS Ssed_2982 NC_009831.1 3610920 3612011 R KEGG: mpt:Mpe_A0731 nitroreductase-like protein; nitroreductase-like protein complement(3610920..3612011) Shewanella sediminis HAW-EB3 5610537 YP_001474718.1 CDS Ssed_2983 NC_009831.1 3612206 3613489 R KEGG: ava:Ava_1044 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(3612206..3613489) Shewanella sediminis HAW-EB3 5610538 YP_001474719.1 CDS Ssed_2984 NC_009831.1 3613868 3614833 R KEGG: vfi:VF0200 acetyltransferase; acetyltransferase complement(3613868..3614833) Shewanella sediminis HAW-EB3 5610539 YP_001474720.1 CDS Ssed_2985 NC_009831.1 3615084 3615755 R KEGG: slo:Shew_1425 adenylyl-sulfate kinase; adenylylsulfate kinase complement(3615084..3615755) Shewanella sediminis HAW-EB3 5610525 YP_001474721.1 CDS Ssed_2986 NC_009831.1 3615825 3617552 R KEGG: slo:Shew_1424 TrkA-C domain protein; TrkA domain-containing protein complement(3615825..3617552) Shewanella sediminis HAW-EB3 5610526 YP_001474722.1 CDS Ssed_2987 NC_009831.1 3617649 3619058 R KEGG: slo:Shew_1423 sulfate adenylyltransferase, large subunit; sulfate adenylyltransferase complement(3617649..3619058) Shewanella sediminis HAW-EB3 5610527 YP_001474723.1 CDS Ssed_2988 NC_009831.1 3619283 3620188 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3619283..3620188) Shewanella sediminis HAW-EB3 5610528 YP_001474724.1 CDS Ssed_2989 NC_009831.1 3621109 3621258 R KEGG: lpp:lpp0207 hypothetical protein; hypothetical protein complement(3621109..3621258) Shewanella sediminis HAW-EB3 5610501 YP_001474725.1 CDS Ssed_2990 NC_009831.1 3621605 3622663 R KEGG: vfi:VF0166 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(3621605..3622663) Shewanella sediminis HAW-EB3 5610502 YP_001474726.1 CDS Ssed_2991 NC_009831.1 3622847 3623749 R KEGG: art:Arth_2683 glycosyl transferase, family 2; glycosyl transferase family protein complement(3622847..3623749) Shewanella sediminis HAW-EB3 5610503 YP_001474727.1 CDS Ssed_2992 NC_009831.1 3623739 3624737 R KEGG: spd:SPD_0321 glycosyl transferase, group 2 family protein; glycosyltransferase-like protein complement(3623739..3624737) Shewanella sediminis HAW-EB3 5610504 YP_001474728.1 CDS Ssed_2993 NC_009831.1 3625133 3625306 R KEGG: ppr:PBPRB1964 transposase; transposase complement(3625133..3625306) Shewanella sediminis HAW-EB3 5610490 YP_001474729.1 CDS Ssed_2997 NC_009831.1 3626188 3626886 R KEGG: psb:Psyr_1578 hypothetical protein; hypothetical protein complement(3626188..3626886) Shewanella sediminis HAW-EB3 5610492 YP_001474730.1 CDS Ssed_2998 NC_009831.1 3626895 3628079 R KEGG: rme:Rmet_5241 protein of unknown function DUF201; hypothetical protein complement(3626895..3628079) Shewanella sediminis HAW-EB3 5610493 YP_001474731.1 CDS Ssed_2999 NC_009831.1 3628079 3628921 R hypothetical protein complement(3628079..3628921) Shewanella sediminis HAW-EB3 5613164 YP_001474732.1 CDS Ssed_3000 NC_009831.1 3629003 3629995 R KEGG: ctc:CTC01708 NDP-sugar dehydratase or epimerase; NDP-sugar dehydratase or epimerase complement(3629003..3629995) Shewanella sediminis HAW-EB3 5613165 YP_001474733.1 CDS Ssed_3001 NC_009831.1 3630106 3631671 R KEGG: ter:Tery_3136 capsular polysaccharide biosynthesis protein-like; hypothetical protein complement(3630106..3631671) Shewanella sediminis HAW-EB3 5613166 YP_001474734.1 CDS Ssed_3002 NC_009831.1 3631668 3632813 R KEGG: ter:Tery_1499 TPR repeat; hypothetical protein complement(3631668..3632813) Shewanella sediminis HAW-EB3 5610403 YP_001474735.1 CDS Ssed_3003 NC_009831.1 3632848 3633984 R apparently involved in regulation of cell wall biogenesis-like protein; KEGG: rsq:Rsph17025_3841 hypothetical protein; pyridoxal phosphate-dependent enzyme complement(3632848..3633984) Shewanella sediminis HAW-EB3 5610404 YP_001474736.1 CDS Ssed_3004 NC_009831.1 3635322 3636518 R KEGG: ter:Tery_4433 hypothetical protein; hypothetical protein complement(3635322..3636518) Shewanella sediminis HAW-EB3 5610405 YP_001474737.1 CDS Ssed_3005 NC_009831.1 3636931 3637755 R KEGG: maq:Maqu_2626 hypothetical protein; hypothetical protein complement(3636931..3637755) Shewanella sediminis HAW-EB3 5610406 YP_001474738.1 CDS Ssed_3006 NC_009831.1 3637823 3638818 R KEGG: rpb:RPB_1995 hypothetical protein; hypothetical protein complement(3637823..3638818) Shewanella sediminis HAW-EB3 5613028 YP_001474739.1 CDS Ssed_3007 NC_009831.1 3638917 3640188 R hypothetical protein complement(3638917..3640188) Shewanella sediminis HAW-EB3 5613029 YP_001474740.1 CDS Ssed_3008 NC_009831.1 3640188 3640970 R KEGG: cje:Cj1432c sugar transferase; HAD superfamily hydrolase-like protein complement(3640188..3640970) Shewanella sediminis HAW-EB3 5613030 YP_001474741.1 CDS Ssed_3009 NC_009831.1 3640987 3641877 R KEGG: art:Arth_1239 glycosyl transferase, family 2; glycosyl transferase family protein complement(3640987..3641877) Shewanella sediminis HAW-EB3 5613031 YP_001474742.1 CDS Ssed_3010 NC_009831.1 3642191 3642604 R KEGG: vco:VC0395_A2635 rfbqrso22-4; rfbqrso22-4-like protein complement(3642191..3642604) Shewanella sediminis HAW-EB3 5611464 YP_001474743.1 CDS Ssed_3011 NC_009831.1 3642790 3643701 R KEGG: pat:Patl_2129 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(3642790..3643701) Shewanella sediminis HAW-EB3 5611465 YP_001474744.1 CDS Ssed_3012 NC_009831.1 3643747 3644292 R KEGG: nmc:NMC0065 dTDP-D-glucose 4,6-dehydratase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3643747..3644292) Shewanella sediminis HAW-EB3 5611466 YP_001474745.1 CDS Ssed_3013 NC_009831.1 3644322 3645212 R KEGG: asa:ASA_1424 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(3644322..3645212) Shewanella sediminis HAW-EB3 5611467 YP_001474746.1 CDS Ssed_3014 NC_009831.1 3645209 3645925 R KEGG: maq:Maqu_2633 ABC transporter related; ABC transporter complement(3645209..3645925) Shewanella sediminis HAW-EB3 5610643 YP_001474747.1 CDS Ssed_3015 NC_009831.1 3645922 3646695 R KEGG: maq:Maqu_2634 ABC-2 type transporter; ABC-type polysaccharide/polyol phosphate export systems permease component-like protein complement(3645922..3646695) Shewanella sediminis HAW-EB3 5610644 YP_001474748.1 CDS Ssed_3016 NC_009831.1 3646705 3647073 R KEGG: noc:Noc_0753 hypothetical protein; hypothetical protein complement(3646705..3647073) Shewanella sediminis HAW-EB3 5610645 YP_001474749.1 CDS Ssed_3017 NC_009831.1 3647080 3647787 R KEGG: noc:Noc_0752 glycosyl transferase, family 2; glycosyl transferase family protein complement(3647080..3647787) Shewanella sediminis HAW-EB3 5610646 YP_001474750.1 CDS Ssed_3018 NC_009831.1 3648042 3649664 R KEGG: sfu:Sfum_2298 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(3648042..3649664) Shewanella sediminis HAW-EB3 5613869 YP_001474751.1 CDS Ssed_3019 NC_009831.1 3649793 3651136 R KEGG: pin:Ping_0044 hypothetical protein; hypothetical protein complement(3649793..3651136) Shewanella sediminis HAW-EB3 5613870 YP_001474752.1 CDS Ssed_3020 NC_009831.1 3651949 3654039 R KEGG: pat:Patl_3236 type II and III secretion system protein; Type II secretory pathway component PulD-like protein complement(3651949..3654039) Shewanella sediminis HAW-EB3 5613871 YP_001474753.1 CDS Ssed_3021 NC_009831.1 3654140 3654661 R hypothetical protein complement(3654140..3654661) Shewanella sediminis HAW-EB3 5613700 YP_001474754.1 CDS Ssed_3022 NC_009831.1 3654648 3655199 R hypothetical protein complement(3654648..3655199) Shewanella sediminis HAW-EB3 5613701 YP_001474755.1 CDS Ssed_3023 NC_009831.1 3655192 3656169 R hypothetical protein complement(3655192..3656169) Shewanella sediminis HAW-EB3 5613702 YP_001474756.1 CDS Ssed_3024 NC_009831.1 3656339 3657232 R KEGG: sat:SYN_00453 general secretion pathway protein K; Type II secretory pathway component PulK-like protein complement(3656339..3657232) Shewanella sediminis HAW-EB3 5613703 YP_001474757.1 CDS Ssed_3025 NC_009831.1 3657232 3657906 R hypothetical protein complement(3657232..3657906) Shewanella sediminis HAW-EB3 5613610 YP_001474758.1 CDS Ssed_3026 NC_009831.1 3657903 3658340 R hypothetical protein complement(3657903..3658340) Shewanella sediminis HAW-EB3 5613611 YP_001474759.1 CDS Ssed_3027 NC_009831.1 3658315 3658770 R hypothetical protein complement(3658315..3658770) Shewanella sediminis HAW-EB3 5613612 YP_001474760.1 CDS Ssed_3028 NC_009831.1 3658742 3659953 R KEGG: dge:Dgeo_0757 type II secretion system protein; type II secretion system protein complement(3658742..3659953) Shewanella sediminis HAW-EB3 5613613 YP_001474761.1 CDS Ssed_3029 NC_009831.1 3659953 3661605 R KEGG: sat:SYN_00458 general secretion pathway protein E; general secretion pathway protein E complement(3659953..3661605) Shewanella sediminis HAW-EB3 5613322 YP_001474762.1 CDS Ssed_3030 NC_009831.1 3661605 3662024 R KEGG: mfa:Mfla_2421 general secretion pathway protein G; general secretion pathway protein G complement(3661605..3662024) Shewanella sediminis HAW-EB3 5613323 YP_001474763.1 CDS Ssed_3031 NC_009831.1 3662071 3663123 R KEGG: shm:Shewmr7_1397 UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase complement(3662071..3663123) Shewanella sediminis HAW-EB3 5613324 YP_001474764.1 CDS Ssed_3032 NC_009831.1 3663288 3666056 R KEGG: slo:Shew_1399 polysaccharide export protein; polysaccharide export protein complement(3663288..3666056) Shewanella sediminis HAW-EB3 5613325 YP_001474765.1 CDS Ssed_3033 NC_009831.1 3666371 3666910 R KEGG: slo:Shew_1398 NusG antitermination factor; NusG antitermination factor complement(3666371..3666910) Shewanella sediminis HAW-EB3 5613365 YP_001474766.1 CDS Ssed_3034 NC_009831.1 3667387 3668862 D KEGG: shn:Shewana3_1373 amino acid/peptide transporter; alkaline phosphatase 3667387..3668862 Shewanella sediminis HAW-EB3 5613366 YP_001474767.1 CDS Ssed_3035 NC_009831.1 3669088 3669417 R KEGG: saz:Sama_2263 S23 ribosomal; S23 ribosomal protein complement(3669088..3669417) Shewanella sediminis HAW-EB3 5613367 YP_001474768.1 CDS Ssed_3036 NC_009831.1 3669839 3670942 R KEGG: slo:Shew_1396 response regulator receiver protein; response regulator receiver protein complement(3669839..3670942) Shewanella sediminis HAW-EB3 5613368 YP_001474769.1 CDS Ssed_3037 NC_009831.1 3671284 3672249 R KEGG: slo:Shew_1395 VacJ family lipoprotein; surface lipoprotein-like protein complement(3671284..3672249) Shewanella sediminis HAW-EB3 5612980 YP_001474770.1 CDS Ssed_3038 NC_009831.1 3672604 3674946 D KEGG: shw:Sputw3181_1455 hypothetical protein; hypothetical protein 3672604..3674946 Shewanella sediminis HAW-EB3 5612981 YP_001474771.1 CDS Ssed_3039 NC_009831.1 3675306 3675641 D KEGG: she:Shewmr4_1309 FlhB domain protein; FlhB domain-containing protein 3675306..3675641 Shewanella sediminis HAW-EB3 5612982 YP_001474772.1 CDS Ssed_3040 NC_009831.1 3676527 3676931 R KEGG: slo:Shew_1392 hypothetical protein; hypothetical protein complement(3676527..3676931) Shewanella sediminis HAW-EB3 5612593 YP_001474773.1 CDS Ssed_3041 NC_009831.1 3677384 3677875 R KEGG: slo:Shew_1391 CheW protein; chemotaxis protein CheW complement(3677384..3677875) Shewanella sediminis HAW-EB3 5612594 YP_001474774.1 CDS Ssed_3042 NC_009831.1 3677883 3679016 R KEGG: slo:Shew_1390 CheW protein; chemotaxis protein CheW complement(3677883..3679016) Shewanella sediminis HAW-EB3 5612595 YP_001474775.1 CDS Ssed_3043 NC_009831.1 3679000 3679791 R KEGG: slo:Shew_1389 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(3679000..3679791) Shewanella sediminis HAW-EB3 5612596 YP_001474776.1 CDS Ssed_3044 NC_009831.1 3679828 3680481 R KEGG: slo:Shew_1388 hypothetical protein; hypothetical protein complement(3679828..3680481) Shewanella sediminis HAW-EB3 5612841 YP_001474777.1 CDS Ssed_3045 NC_009831.1 3680474 3681589 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(3680474..3681589) Shewanella sediminis HAW-EB3 5612842 YP_001474778.1 CDS Ssed_3046 NC_009831.1 3681615 3683816 R KEGG: slo:Shew_1386 CheA signal transduction histidine kinase; CheA signal transduction histidine kinase complement(3681615..3683816) Shewanella sediminis HAW-EB3 5612843 YP_001474779.1 CDS Ssed_3047 NC_009831.1 3683832 3684569 R KEGG: slo:Shew_1385 chemotaxis phosphatase, CheZ; chemotaxis protein CheZ complement(3683832..3684569) Shewanella sediminis HAW-EB3 5612844 YP_001474780.1 CDS Ssed_3048 NC_009831.1 3684583 3684966 R KEGG: slo:Shew_1384 response regulator receiver protein; response regulator receiver protein complement(3684583..3684966) Shewanella sediminis HAW-EB3 5612526 YP_001474781.1 CDS fliA NC_009831.1 3685040 3685759 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(3685040..3685759) Shewanella sediminis HAW-EB3 5612527 YP_001474782.1 CDS Ssed_3050 NC_009831.1 3685752 3686633 R KEGG: slo:Shew_1382 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(3685752..3686633) Shewanella sediminis HAW-EB3 5612528 YP_001474783.1 CDS flhF NC_009831.1 3686638 3688032 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(3686638..3688032) Shewanella sediminis HAW-EB3 5612529 YP_001474784.1 CDS flhA NC_009831.1 3688044 3690146 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(3688044..3690146) Shewanella sediminis HAW-EB3 5612331 YP_001474785.1 CDS flhB NC_009831.1 3690448 3691581 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(3690448..3691581) Shewanella sediminis HAW-EB3 5612332 YP_001474786.1 CDS fliR NC_009831.1 3691614 3692411 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(3691614..3692411) Shewanella sediminis HAW-EB3 5612333 YP_001474787.1 CDS Ssed_3055 NC_009831.1 3692464 3692733 R KEGG: slo:Shew_1377 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(3692464..3692733) Shewanella sediminis HAW-EB3 5612334 YP_001474788.1 CDS fliP NC_009831.1 3692742 3693488 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(3692742..3693488) Shewanella sediminis HAW-EB3 5612043 YP_001474789.1 CDS Ssed_3057 NC_009831.1 3693485 3693862 R KEGG: slo:Shew_1375 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO complement(3693485..3693862) Shewanella sediminis HAW-EB3 5612044 YP_001474790.1 CDS fliN NC_009831.1 3693871 3694254 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(3693871..3694254) Shewanella sediminis HAW-EB3 5612045 YP_001474791.1 CDS fliM NC_009831.1 3694360 3695385 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(3694360..3695385) Shewanella sediminis HAW-EB3 5612258 YP_001474792.1 CDS fliL NC_009831.1 3695427 3695948 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(3695427..3695948) Shewanella sediminis HAW-EB3 5612259 YP_001474793.1 CDS Ssed_3061 NC_009831.1 3696068 3697897 R KEGG: slo:Shew_1371 flagellar hook-length control protein; flagellar hook-length control protein complement(3696068..3697897) Shewanella sediminis HAW-EB3 5612260 YP_001474794.1 CDS Ssed_3062 NC_009831.1 3698056 3698502 R KEGG: slo:Shew_1370 flagellar export protein FliJ; flagellar export protein FliJ complement(3698056..3698502) Shewanella sediminis HAW-EB3 5612261 YP_001474795.1 CDS fliI NC_009831.1 3698569 3699909 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(3698569..3699909) Shewanella sediminis HAW-EB3 5612011 YP_001474796.1 CDS Ssed_3064 NC_009831.1 3700030 3701034 R KEGG: shm:Shewmr7_1351 flagellar assembly protein FliH; flagellar assembly protein FliH complement(3700030..3701034) Shewanella sediminis HAW-EB3 5612012 YP_001474797.1 CDS fliG NC_009831.1 3701034 3702083 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(3701034..3702083) Shewanella sediminis HAW-EB3 5612013 YP_001474798.1 CDS fliF NC_009831.1 3702073 3703782 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(3702073..3703782) Shewanella sediminis HAW-EB3 5612014 YP_001474799.1 CDS Ssed_3067 NC_009831.1 3703859 3704191 R KEGG: slo:Shew_1365 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE complement(3703859..3704191) Shewanella sediminis HAW-EB3 5611795 YP_001474800.1 CDS Ssed_3068 NC_009831.1 3704516 3705874 R KEGG: slo:Shew_1364 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(3704516..3705874) Shewanella sediminis HAW-EB3 5611796 YP_001474801.1 CDS Ssed_3069 NC_009831.1 3705867 3706982 R KEGG: spc:Sputcn32_2579 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(3705867..3706982) Shewanella sediminis HAW-EB3 5611797 YP_001474802.1 CDS Ssed_3070 NC_009831.1 3707277 3708710 R KEGG: slo:Shew_1362 sigma54 specific transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator complement(3707277..3708710) Shewanella sediminis HAW-EB3 5611798 YP_001474803.1 CDS fliS NC_009831.1 3709001 3709411 R flagellin specific chaperone; flagellar protein FliS complement(3709001..3709411) Shewanella sediminis HAW-EB3 5611938 YP_001474804.1 CDS Ssed_3072 NC_009831.1 3709422 3709748 R KEGG: slo:Shew_1360 hypothetical protein; hypothetical protein complement(3709422..3709748) Shewanella sediminis HAW-EB3 5611939 YP_001474805.1 CDS Ssed_3073 NC_009831.1 3709776 3711149 R KEGG: slo:Shew_1359 flagellar hook-associated 2 domain protein; flagellar hook-associated 2 domain-containing protein complement(3709776..3711149) Shewanella sediminis HAW-EB3 5611940 YP_001474806.1 CDS Ssed_3074 NC_009831.1 3711202 3711591 R KEGG: slo:Shew_1358 flagellar protein FlaG protein; flagellar protein FlaG protein complement(3711202..3711591) Shewanella sediminis HAW-EB3 5611941 YP_001474807.1 CDS Ssed_3075 NC_009831.1 3711699 3712517 R KEGG: son:SO3238 flagellin; flagellin complement(3711699..3712517) Shewanella sediminis HAW-EB3 5611644 YP_001474808.1 CDS Ssed_3076 NC_009831.1 3712762 3713583 R KEGG: son:SO3238 flagellin; flagellin complement(3712762..3713583) Shewanella sediminis HAW-EB3 5611645 YP_001474809.1 CDS flgL NC_009831.1 3713650 3714840 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL complement(3713650..3714840) Shewanella sediminis HAW-EB3 5611646 YP_001474810.1 CDS Ssed_3078 NC_009831.1 3714898 3716814 R KEGG: slo:Shew_1354 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(3714898..3716814) Shewanella sediminis HAW-EB3 5611626 YP_001474811.1 CDS flgJ NC_009831.1 3716891 3717904 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(3716891..3717904) Shewanella sediminis HAW-EB3 5611627 YP_001474812.1 CDS flgI NC_009831.1 3718095 3719186 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(3718095..3719186) Shewanella sediminis HAW-EB3 5611628 YP_001474813.1 CDS flgH NC_009831.1 3719199 3719888 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein complement(3719199..3719888) Shewanella sediminis HAW-EB3 5611629 YP_001474814.1 CDS flgG NC_009831.1 3719899 3720687 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(3719899..3720687) Shewanella sediminis HAW-EB3 5611472 YP_001474815.1 CDS flgF NC_009831.1 3720699 3721442 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(3720699..3721442) Shewanella sediminis HAW-EB3 5611473 YP_001474816.1 CDS flgE NC_009831.1 3721649 3723013 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(3721649..3723013) Shewanella sediminis HAW-EB3 5611474 YP_001474817.1 CDS flgD NC_009831.1 3723198 3724046 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(3723198..3724046) Shewanella sediminis HAW-EB3 5611475 YP_001474818.1 CDS flgC NC_009831.1 3724060 3724476 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(3724060..3724476) Shewanella sediminis HAW-EB3 5611002 YP_001474819.1 CDS flgB NC_009831.1 3724479 3724877 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB complement(3724479..3724877) Shewanella sediminis HAW-EB3 5611003 YP_001474820.1 CDS Ssed_3088 NC_009831.1 3725146 3725979 R KEGG: slo:Shew_1344 MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase complement(3725146..3725979) Shewanella sediminis HAW-EB3 5611004 YP_001474821.1 CDS Ssed_3089 NC_009831.1 3726110 3727030 R KEGG: slo:Shew_1343 response regulator receiver modulated CheW protein; response regulator receiver modulated CheW protein complement(3726110..3727030) Shewanella sediminis HAW-EB3 5611005 YP_001474822.1 CDS flgA NC_009831.1 3727170 3727949 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 3727170..3727949 Shewanella sediminis HAW-EB3 5610898 YP_001474823.1 CDS Ssed_3091 NC_009831.1 3728055 3728390 D KEGG: slo:Shew_1341 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 3728055..3728390 Shewanella sediminis HAW-EB3 5610899 YP_001474824.1 CDS Ssed_3092 NC_009831.1 3728398 3728823 D KEGG: slo:Shew_1340 FlgN family protein; FlgN family protein 3728398..3728823 Shewanella sediminis HAW-EB3 5610900 YP_001474825.1 CDS Ssed_3093 NC_009831.1 3729093 3729539 R KEGG: slo:Shew_1339 protein of unknown function DUF400; hypothetical protein complement(3729093..3729539) Shewanella sediminis HAW-EB3 5610901 YP_001474826.1 CDS Ssed_3094 NC_009831.1 3729536 3730162 R KEGG: slo:Shew_1338 hypothetical protein; hypothetical protein complement(3729536..3730162) Shewanella sediminis HAW-EB3 5610983 YP_001474827.1 CDS Ssed_3095 NC_009831.1 3730519 3732303 D KEGG: spc:Sputcn32_1449 hypothetical protein; hypothetical protein 3730519..3732303 Shewanella sediminis HAW-EB3 5610984 YP_001474828.1 CDS Ssed_3096 NC_009831.1 3732633 3733799 D KEGG: slo:Shew_1337 hypothetical protein; hypothetical protein 3732633..3733799 Shewanella sediminis HAW-EB3 5610985 YP_001474829.1 CDS Ssed_3097 NC_009831.1 3734505 3735716 D KEGG: vvu:VV1_0811 predicted nucleoside-diphosphate sugar epimerase; nucleoside-diphosphate sugar epimerase 3734505..3735716 Shewanella sediminis HAW-EB3 5610638 YP_001474830.1 CDS Ssed_3098 NC_009831.1 3735747 3736904 D KEGG: vfi:VF0141 UDP-bacillosamine synthetase; UDP-bacillosamine synthetase 3735747..3736904 Shewanella sediminis HAW-EB3 5613072 YP_001474831.1 CDS Ssed_3099 NC_009831.1 3736897 3738060 D KEGG: vpa:VP0199 NeuC; NeuC 3736897..3738060 Shewanella sediminis HAW-EB3 5613073 YP_001474832.1 CDS Ssed_3100 NC_009831.1 3738062 3739135 D KEGG: vvy:VV0312 sialic acid synthase; N-acylneuraminate-9-phosphate synthase 3738062..3739135 Shewanella sediminis HAW-EB3 5613074 YP_001474833.1 CDS Ssed_3101 NC_009831.1 3739146 3739766 D KEGG: vfi:VF0144 sialic acid biosynthesis protein NeuD; sialic acid synthase 3739146..3739766 Shewanella sediminis HAW-EB3 5611086 YP_001474834.1 CDS Ssed_3102 NC_009831.1 3739768 3740826 D KEGG: vfi:VF0145 mannose-1-phosphate guanyltransferase; mannose-1-phosphate guanylyltransferase 3739768..3740826 Shewanella sediminis HAW-EB3 5611087 YP_001474835.1 CDS Ssed_3103 NC_009831.1 3740823 3741803 D KEGG: vvy:VV0315 predicted dehydrogenase; dehydrogenase 3740823..3741803 Shewanella sediminis HAW-EB3 5611088 YP_001474836.1 CDS Ssed_3104 NC_009831.1 3741800 3742501 D KEGG: vvy:VV0316 CMP-N-acetylneuraminic acid synthetase; N-acylneuraminate cytidylyltransferase 3741800..3742501 Shewanella sediminis HAW-EB3 5611089 YP_001474837.1 CDS Ssed_3105 NC_009831.1 3742495 3743253 D KEGG: vvy:VV0317 flagellin modification protein A; flagellin modification protein A 3742495..3743253 Shewanella sediminis HAW-EB3 5611117 YP_001474838.1 CDS Ssed_3106 NC_009831.1 3743257 3743808 D KEGG: vvy:VV0322 acetyltransferase; acetyltransferase 3743257..3743808 Shewanella sediminis HAW-EB3 5611118 YP_001474839.1 CDS Ssed_3107 NC_009831.1 3743957 3746482 D KEGG: shw:Sputw3181_1377 protein of unknown function DUF115; hypothetical protein 3743957..3746482 Shewanella sediminis HAW-EB3 5611119 YP_001474840.1 CDS Ssed_3108 NC_009831.1 3746590 3747069 D KEGG: slo:Shew_1316 hypothetical protein; hypothetical protein 3746590..3747069 Shewanella sediminis HAW-EB3 5611120 YP_001474841.1 CDS Ssed_3109 NC_009831.1 3747287 3747862 D KEGG: sbl:Sbal_2970 hypothetical protein; hypothetical protein 3747287..3747862 Shewanella sediminis HAW-EB3 5611694 YP_001474842.1 CDS Ssed_3110 NC_009831.1 3747999 3748922 R KEGG: slo:Shew_1314 hypothetical protein; hypothetical protein complement(3747999..3748922) Shewanella sediminis HAW-EB3 5611695 YP_001474843.1 CDS Ssed_3111 NC_009831.1 3749078 3749710 R KEGG: slo:Shew_1313 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3749078..3749710) Shewanella sediminis HAW-EB3 5611696 YP_001474844.1 CDS Ssed_3112 NC_009831.1 3749856 3750980 D KEGG: slo:Shew_1312 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3749856..3750980 Shewanella sediminis HAW-EB3 5611697 YP_001474845.1 CDS Ssed_3113 NC_009831.1 3750984 3754076 D KEGG: slo:Shew_1311 acriflavin resistance protein; acriflavin resistance protein 3750984..3754076 Shewanella sediminis HAW-EB3 5613891 YP_001474846.1 CDS Ssed_3114 NC_009831.1 3754341 3756344 D KEGG: slo:Shew_1310 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3754341..3756344 Shewanella sediminis HAW-EB3 5613892 YP_001474847.1 CDS Ssed_3115 NC_009831.1 3756811 3756960 D KEGG: saz:Sama_2346 regulatory protein, TfoX family; TfoX family regulatory protein 3756811..3756960 Shewanella sediminis HAW-EB3 5613893 YP_001474848.1 CDS Ssed_3116 NC_009831.1 3757120 3757236 R KEGG: slo:Shew_1304 cyd operon protein YbgT; cyd operon protein YbgT complement(3757120..3757236) Shewanella sediminis HAW-EB3 5611013 YP_001474849.1 CDS Ssed_3117 NC_009831.1 3757252 3758391 R KEGG: slo:Shew_1303 cytochrome d ubiquinol oxidase, subunit II; alkaline phosphatase complement(3757252..3758391) Shewanella sediminis HAW-EB3 5611014 YP_001474850.1 CDS Ssed_3118 NC_009831.1 3758407 3759963 R KEGG: slo:Shew_1302 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase, subunit I complement(3758407..3759963) Shewanella sediminis HAW-EB3 5611015 YP_001474851.1 CDS Ssed_3119 NC_009831.1 3761210 3765091 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(3761210..3765091) Shewanella sediminis HAW-EB3 5611016 YP_001474852.1 CDS Ssed_3120 NC_009831.1 3765424 3766866 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 3765424..3766866 Shewanella sediminis HAW-EB3 5611231 YP_001474853.1 CDS Ssed_3121 NC_009831.1 3767283 3767816 R KEGG: saz:Sama_2352 cytidine/deoxycytidylate deaminase family protein; cytidine/deoxycytidylate deaminase family protein complement(3767283..3767816) Shewanella sediminis HAW-EB3 5611232 YP_001474854.1 CDS Ssed_3122 NC_009831.1 3767927 3768856 D KEGG: saz:Sama_2353 GGDEF domain-like protein; diguanylate cyclase 3767927..3768856 Shewanella sediminis HAW-EB3 5611233 YP_001474855.1 CDS guaA NC_009831.1 3768930 3770507 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3768930..3770507) Shewanella sediminis HAW-EB3 5611234 YP_001474856.1 CDS Ssed_3124 NC_009831.1 3770634 3772106 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(3770634..3772106) Shewanella sediminis HAW-EB3 5611250 YP_001474857.1 CDS xseA NC_009831.1 3772228 3773556 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 3772228..3773556 Shewanella sediminis HAW-EB3 5611251 YP_001474858.1 CDS Ssed_3126 NC_009831.1 3773632 3773988 R KEGG: mgm:Mmc1_1103 DsrE family protein; DsrE family protein complement(3773632..3773988) Shewanella sediminis HAW-EB3 5611252 YP_001474859.1 CDS Ssed_3127 NC_009831.1 3774013 3774588 R KEGG: gur:Gura_3310 methyltransferase type 11; type 11 methyltransferase complement(3774013..3774588) Shewanella sediminis HAW-EB3 5611253 YP_001474860.1 CDS Ssed_3128 NC_009831.1 3774674 3775345 D KEGG: mgm:Mmc1_1102 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 3774674..3775345 Shewanella sediminis HAW-EB3 5611246 YP_001474861.1 CDS Ssed_3129 NC_009831.1 3775631 3776236 R KEGG: rme:Rmet_1780 methyltransferase type 11; type 11 methyltransferase complement(3775631..3776236) Shewanella sediminis HAW-EB3 5611247 YP_001474862.1 CDS Ssed_3130 NC_009831.1 3777387 3779141 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3777387..3779141 Shewanella sediminis HAW-EB3 5611248 YP_001474863.1 CDS Ssed_3131 NC_009831.1 3779253 3780482 R KEGG: slo:Shew_2605 phenylacetate-coenzyme A ligase; phenylacetate-coenzyme A ligase complement(3779253..3780482) Shewanella sediminis HAW-EB3 5611249 YP_001474864.1 CDS Ssed_3132 NC_009831.1 3780533 3781351 R KEGG: slo:Shew_2606 ABC transporter-related protein; ABC transporter-like protein complement(3780533..3781351) Shewanella sediminis HAW-EB3 5611268 YP_001474865.1 CDS Ssed_3133 NC_009831.1 3781401 3782648 R KEGG: slo:Shew_2607 branched-chain amino acid ABC transporter; branched-chain amino acid ABC transporter complement(3781401..3782648) Shewanella sediminis HAW-EB3 5611269 YP_001474866.1 CDS Ssed_3134 NC_009831.1 3782879 3783952 R KEGG: slo:Shew_2608 inner-membrane translocator; inner-membrane translocator complement(3782879..3783952) Shewanella sediminis HAW-EB3 5611270 YP_001474867.1 CDS Ssed_3135 NC_009831.1 3784040 3784933 R KEGG: slo:Shew_2609 inner-membrane translocator; inner-membrane translocator complement(3784040..3784933) Shewanella sediminis HAW-EB3 5611290 YP_001474868.1 CDS Ssed_3136 NC_009831.1 3784930 3786894 R KEGG: slo:Shew_2610 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(3784930..3786894) Shewanella sediminis HAW-EB3 5611291 YP_001474869.1 CDS Ssed_3137 NC_009831.1 3786894 3787691 R KEGG: slo:Shew_2611 ABC transporter-related protein; ABC transporter-like protein complement(3786894..3787691) Shewanella sediminis HAW-EB3 5611292 YP_001474870.1 CDS Ssed_3138 NC_009831.1 3787888 3788928 R KEGG: slo:Shew_2612 hypothetical protein; hypothetical protein complement(3787888..3788928) Shewanella sediminis HAW-EB3 5611293 YP_001474871.1 CDS Ssed_3139 NC_009831.1 3789169 3792654 D KEGG: slo:Shew_2613 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 3789169..3792654 Shewanella sediminis HAW-EB3 5611271 YP_001474872.1 CDS Ssed_3140 NC_009831.1 3792615 3793277 R KEGG: slo:Shew_2614 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(3792615..3793277) Shewanella sediminis HAW-EB3 5611272 YP_001474873.1 CDS Ssed_3141 NC_009831.1 3793709 3794836 D KEGG: slo:Shew_2615 patatin; patatin 3793709..3794836 Shewanella sediminis HAW-EB3 5611273 YP_001474874.1 CDS Ssed_3142 NC_009831.1 3794923 3795636 R KEGG: ppr:PBPRB1925 hypothetical protein; hypothetical protein complement(3794923..3795636) Shewanella sediminis HAW-EB3 5611274 YP_001474875.1 CDS Ssed_3143 NC_009831.1 3795647 3797596 R KEGG: slo:Shew_2617 potassium efflux system protein; potassium efflux system protein complement(3795647..3797596) Shewanella sediminis HAW-EB3 5614192 YP_001474876.1 CDS Ssed_3144 NC_009831.1 3797781 3798662 D KEGG: she:Shewmr4_2624 diguanylate cyclase; diguanylate cyclase 3797781..3798662 Shewanella sediminis HAW-EB3 5614193 YP_001474877.1 CDS Ssed_3145 NC_009831.1 3798643 3800127 R KEGG: she:Shewmr4_2625 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase complement(3798643..3800127) Shewanella sediminis HAW-EB3 5614194 YP_001474878.1 CDS dnaE NC_009831.1 3800129 3803602 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3800129..3803602) Shewanella sediminis HAW-EB3 5614195 YP_001474879.1 CDS rnhB NC_009831.1 3803736 3804377 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3803736..3804377) Shewanella sediminis HAW-EB3 5610178 YP_001474880.1 CDS lpxB NC_009831.1 3804411 3805553 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3804411..3805553) Shewanella sediminis HAW-EB3 5610179 YP_001474881.1 CDS Ssed_3149 NC_009831.1 3805634 3806401 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3805634..3806401) Shewanella sediminis HAW-EB3 5610180 YP_001474882.1 CDS fabZ NC_009831.1 3806398 3806859 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3806398..3806859) Shewanella sediminis HAW-EB3 5610181 YP_001474883.1 CDS lpxD NC_009831.1 3806889 3807914 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3806889..3807914) Shewanella sediminis HAW-EB3 5610199 YP_001474884.1 CDS Ssed_3152 NC_009831.1 3807934 3808428 R KEGG: slo:Shew_2626 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(3807934..3808428) Shewanella sediminis HAW-EB3 5610200 YP_001474885.1 CDS Ssed_3153 NC_009831.1 3808498 3810981 R KEGG: slo:Shew_2627 surface antigen (D15); surface antigen (D15) complement(3808498..3810981) Shewanella sediminis HAW-EB3 5610201 YP_001474886.1 CDS Ssed_3154 NC_009831.1 3811011 3812396 R KEGG: slo:Shew_2628 membrane-associated zinc metalloprotease; membrane-associated zinc metalloprotease complement(3811011..3812396) Shewanella sediminis HAW-EB3 5610113 YP_001474887.1 CDS Ssed_3155 NC_009831.1 3812416 3813603 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3812416..3813603) Shewanella sediminis HAW-EB3 5610114 YP_001474888.1 CDS Ssed_3156 NC_009831.1 3813607 3814464 R KEGG: shm:Shewmr7_2703 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3813607..3814464) Shewanella sediminis HAW-EB3 5610115 YP_001474889.1 CDS Ssed_3157 NC_009831.1 3814483 3815277 R KEGG: slo:Shew_2631 UDP diphosphate synthase; di-trans, poly-cis-decaprenylcistransferase complement(3814483..3815277) Shewanella sediminis HAW-EB3 5610116 YP_001474890.1 CDS frr NC_009831.1 3815358 3815915 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3815358..3815915) Shewanella sediminis HAW-EB3 5610303 YP_001474891.1 CDS pyrH NC_009831.1 3815990 3816727 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3815990..3816727) Shewanella sediminis HAW-EB3 5610304 YP_001474892.1 CDS tsf NC_009831.1 3816817 3817665 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3816817..3817665) Shewanella sediminis HAW-EB3 5610305 YP_001474893.1 CDS rpsB NC_009831.1 3817800 3818528 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3817800..3818528) Shewanella sediminis HAW-EB3 5610306 YP_001474894.1 CDS Ssed_3162 NC_009831.1 3818881 3819678 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3818881..3819678 Shewanella sediminis HAW-EB3 5610747 YP_001474895.1 CDS Ssed_3163 NC_009831.1 3819755 3822334 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3819755..3822334 Shewanella sediminis HAW-EB3 5610748 YP_001474896.1 CDS dapD NC_009831.1 3822527 3823351 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3822527..3823351 Shewanella sediminis HAW-EB3 5610749 YP_001474897.1 CDS Ssed_3165 NC_009831.1 3823604 3823948 D KEGG: slo:Shew_2639 hypothetical protein; hypothetical protein 3823604..3823948 Shewanella sediminis HAW-EB3 5610750 YP_001474898.1 CDS purU NC_009831.1 3824143 3824976 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(3824143..3824976) Shewanella sediminis HAW-EB3 5610909 YP_001474899.1 CDS Ssed_3167 NC_009831.1 3825018 3826487 R KEGG: slo:Shew_2641 PTS system, glucose-like IIB subunint; PTS system glucose-like transporter subunit IIB complement(3825018..3826487) Shewanella sediminis HAW-EB3 5610910 YP_001474900.1 CDS Ssed_3168 NC_009831.1 3826439 3826903 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3826439..3826903) Shewanella sediminis HAW-EB3 5610911 YP_001474901.1 CDS Ssed_3169 NC_009831.1 3827342 3828178 R KEGG: slo:Shew_2643 pseudouridylate synthase; pseudouridylate synthase complement(3827342..3828178) Shewanella sediminis HAW-EB3 5610912 YP_001474902.1 CDS Ssed_3170 NC_009831.1 3828180 3828500 R KEGG: son:SO1619 hypothetical protein; hypothetical protein complement(3828180..3828500) Shewanella sediminis HAW-EB3 5610717 YP_001474903.1 CDS Ssed_3171 NC_009831.1 3828741 3829754 D KEGG: slo:Shew_2645 hypothetical protein; hypothetical protein 3828741..3829754 Shewanella sediminis HAW-EB3 5610718 YP_001474904.1 CDS Ssed_3172 NC_009831.1 3829751 3830140 D KEGG: slo:Shew_2646 hypothetical protein; hypothetical protein 3829751..3830140 Shewanella sediminis HAW-EB3 5610719 YP_001474905.1 CDS Ssed_3173 NC_009831.1 3831663 3832310 R KEGG: slo:Shew_2648 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3831663..3832310) Shewanella sediminis HAW-EB3 5611144 YP_001474906.1 CDS Ssed_3174 NC_009831.1 3832792 3833022 D KEGG: shn:Shewana3_2830 hypothetical protein; hypothetical protein 3832792..3833022 Shewanella sediminis HAW-EB3 5611145 YP_001474907.1 CDS Ssed_3175 NC_009831.1 3833030 3833386 R KEGG: shw:Sputw3181_2770 hypothetical protein; hypothetical protein complement(3833030..3833386) Shewanella sediminis HAW-EB3 5611146 YP_001474908.1 CDS Ssed_3176 NC_009831.1 3833549 3833881 D KEGG: sfr:Sfri_1252 hypothetical protein; hypothetical protein 3833549..3833881 Shewanella sediminis HAW-EB3 5611147 YP_001474909.1 CDS Ssed_3177 NC_009831.1 3833881 3834654 D KEGG: slo:Shew_2652 hypothetical protein; hypothetical protein 3833881..3834654 Shewanella sediminis HAW-EB3 5611408 YP_001474910.1 CDS Ssed_3178 NC_009831.1 3834700 3835353 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3834700..3835353) Shewanella sediminis HAW-EB3 5611409 YP_001474911.1 CDS queF NC_009831.1 3835399 3836271 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3835399..3836271 Shewanella sediminis HAW-EB3 5611410 YP_001474912.1 CDS Ssed_3180 NC_009831.1 3836525 3837304 R hypothetical protein complement(3836525..3837304) Shewanella sediminis HAW-EB3 5611411 YP_001474913.1 CDS Ssed_3181 NC_009831.1 3837413 3838099 R KEGG: vfi:VF0867 hypothetical protein; hypothetical protein complement(3837413..3838099) Shewanella sediminis HAW-EB3 5611556 YP_001474914.1 CDS Ssed_3182 NC_009831.1 3838297 3839199 R KEGG: son:SO1607 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3838297..3839199) Shewanella sediminis HAW-EB3 5611557 YP_001474915.1 CDS Ssed_3183 NC_009831.1 3839296 3840204 R KEGG: sbl:Sbal_1430 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3839296..3840204) Shewanella sediminis HAW-EB3 5611558 YP_001474916.1 CDS Ssed_3184 NC_009831.1 3840370 3842370 D KEGG: son:SO1606 metallo-beta-lactamase superfamily protein; metallo-beta-lactamase superfamily protein 3840370..3842370 Shewanella sediminis HAW-EB3 5611559 YP_001474917.1 CDS Ssed_3185 NC_009831.1 3842878 3844068 D KEGG: slo:Shew_2655 hypothetical protein; hypothetical protein 3842878..3844068 Shewanella sediminis HAW-EB3 5611885 YP_001474918.1 CDS Ssed_3186 NC_009831.1 3844311 3845249 R KEGG: sfr:Sfri_1245 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(3844311..3845249) Shewanella sediminis HAW-EB3 5611886 YP_001474919.1 CDS Ssed_3187 NC_009831.1 3845495 3847420 D KEGG: pca:Pcar_2967 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis protein-like protein 3845495..3847420 Shewanella sediminis HAW-EB3 5611887 YP_001474920.1 CDS Ssed_3188 NC_009831.1 3847575 3848828 D KEGG: aha:AHA_2094 HD domain protein; HD domain-containing protein 3847575..3848828 Shewanella sediminis HAW-EB3 5611888 YP_001474921.1 CDS Ssed_3189 NC_009831.1 3849052 3849642 D KEGG: rfr:Rfer_3639 sigma-24 (FecI-like); sigma-24 FecI-like protein 3849052..3849642 Shewanella sediminis HAW-EB3 5612192 YP_001474922.1 CDS Ssed_3190 NC_009831.1 3849791 3850798 D KEGG: sfr:Sfri_1725 permease; permease 3849791..3850798 Shewanella sediminis HAW-EB3 5612193 YP_001474923.1 CDS Ssed_3191 NC_009831.1 3850803 3851039 D KEGG: tbd:Tbd_1429 thiol-disulfide isomerase/thioredoxin; thiol-disulfide isomerase/thioredoxin 3850803..3851039 Shewanella sediminis HAW-EB3 5612194 YP_001474924.1 CDS Ssed_3192 NC_009831.1 3851229 3851708 D KEGG: shm:Shewmr7_0636 protein of unknown function DUF985; hypothetical protein 3851229..3851708 Shewanella sediminis HAW-EB3 5611993 YP_001474925.1 CDS Ssed_3193 NC_009831.1 3851960 3852163 D KEGG: son:SO0439 hypothetical protein; hypothetical protein 3851960..3852163 Shewanella sediminis HAW-EB3 5611994 YP_001474926.1 CDS Ssed_3194 NC_009831.1 3852294 3853589 R KEGG: ppr:PBPRB1123 hypothetical protein; hypothetical protein complement(3852294..3853589) Shewanella sediminis HAW-EB3 5611995 YP_001474927.1 CDS Ssed_3195 NC_009831.1 3853586 3854269 R KEGG: ppr:PBPRB1124 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein complement(3853586..3854269) Shewanella sediminis HAW-EB3 5611996 YP_001474928.1 CDS Ssed_3196 NC_009831.1 3854404 3855636 R KEGG: ppr:PBPRB1125 hypothetical protein; hypothetical protein complement(3854404..3855636) Shewanella sediminis HAW-EB3 5612082 YP_001474929.1 CDS Ssed_3197 NC_009831.1 3855626 3856909 R KEGG: ppr:PBPRB1126 hypothetical protein; hypothetical protein complement(3855626..3856909) Shewanella sediminis HAW-EB3 5612083 YP_001474930.1 CDS Ssed_3198 NC_009831.1 3856966 3857733 R KEGG: ppr:PBPRB1127 hypothetical protein; hypothetical protein complement(3856966..3857733) Shewanella sediminis HAW-EB3 5612084 YP_001474931.1 CDS Ssed_3199 NC_009831.1 3858577 3861495 D KEGG: mac:MA0247 hypothetical protein; hypothetical protein 3858577..3861495 Shewanella sediminis HAW-EB3 5612085 YP_001474932.1 CDS Ssed_3200 NC_009831.1 3862123 3864171 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3862123..3864171) Shewanella sediminis HAW-EB3 5612727 YP_001474933.1 CDS Ssed_3201 NC_009831.1 3864571 3865437 D KEGG: slo:Shew_2664 transcriptional regulator; transcriptional regulator 3864571..3865437 Shewanella sediminis HAW-EB3 5612728 YP_001474934.1 CDS Ssed_3202 NC_009831.1 3865437 3873731 D KEGG: slo:Shew_2665 beta-ketoacyl synthase; erythronolide synthase 3865437..3873731 Shewanella sediminis HAW-EB3 5612729 YP_001474935.1 CDS Ssed_3203 NC_009831.1 3873731 3876028 D KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 3873731..3876028 Shewanella sediminis HAW-EB3 5612730 YP_001474936.1 CDS Ssed_3204 NC_009831.1 3876028 3881841 D KEGG: ppr:PBPRA1458 omega-3 polyunsaturated fatty acid synthase PfaC; omega-3 polyunsaturated fatty acid synthase PfaC 3876028..3881841 Shewanella sediminis HAW-EB3 5612735 YP_001474937.1 CDS Ssed_3205 NC_009831.1 3882033 3883658 D KEGG: slo:Shew_2668 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3882033..3883658 Shewanella sediminis HAW-EB3 5612736 YP_001474938.1 CDS Ssed_3206 NC_009831.1 3883982 3885247 R KEGG: sdn:Sden_2088 esterase; esterase complement(3883982..3885247) Shewanella sediminis HAW-EB3 5612737 YP_001474939.1 CDS Ssed_3207 NC_009831.1 3885693 3887117 D KEGG: vfi:VF1052 transporter, divalent anion:sodium symporter family; divalent anion:sodium symporter family protein 3885693..3887117 Shewanella sediminis HAW-EB3 5612738 YP_001474940.1 CDS Ssed_3208 NC_009831.1 3887296 3888651 D KEGG: vfi:VF1053 sensory transduction protein kinase; sensory transduction protein kinase 3887296..3888651 Shewanella sediminis HAW-EB3 5613393 YP_001474941.1 CDS Ssed_3209 NC_009831.1 3888638 3889111 D KEGG: ppr:PBPRA1218 chemotaxis protein CheY; chemotaxis protein CheY 3888638..3889111 Shewanella sediminis HAW-EB3 5613394 YP_001474942.1 CDS Ssed_3210 NC_009831.1 3889152 3889961 R KEGG: sfr:Sfri_0228 regulatory protein RecX; regulatory protein RecX complement(3889152..3889961) Shewanella sediminis HAW-EB3 5613395 YP_001474943.1 CDS Ssed_3211 NC_009831.1 3890171 3892357 R KEGG: shw:Sputw3181_0744 uncharacterized domain; hypothetical protein complement(3890171..3892357) Shewanella sediminis HAW-EB3 5613318 YP_001474944.1 CDS Ssed_3212 NC_009831.1 3892660 3894144 R KEGG: vpa:VPA0362 outer membrane protein; outer membrane protein complement(3892660..3894144) Shewanella sediminis HAW-EB3 5613319 YP_001474945.1 CDS Ssed_3213 NC_009831.1 3894146 3897229 R KEGG: vpa:VPA0363 efflux protein; efflux protein complement(3894146..3897229) Shewanella sediminis HAW-EB3 5613320 YP_001474946.1 CDS Ssed_3214 NC_009831.1 3897238 3898341 R KEGG: vpa:VPA0364 efflux protein; efflux protein complement(3897238..3898341) Shewanella sediminis HAW-EB3 5613321 YP_001474947.1 CDS Ssed_3215 NC_009831.1 3898432 3899322 R KEGG: vpa:VPA0365 transcriptional regulator protein; transcriptional regulator protein complement(3898432..3899322) Shewanella sediminis HAW-EB3 5613430 YP_001474948.1 CDS Ssed_3216 NC_009831.1 3899480 3900682 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3899480..3900682) Shewanella sediminis HAW-EB3 5613431 YP_001474949.1 CDS Ssed_3217 NC_009831.1 3900856 3903711 R KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein; signal transduction protein complement(3900856..3903711) Shewanella sediminis HAW-EB3 5613432 YP_001474950.1 CDS Ssed_3218 NC_009831.1 3904199 3906745 R KEGG: pha:PSHAb0113 TonB-dependent receptor for Fe; TonB-dependent receptor for Fe complement(3904199..3906745) Shewanella sediminis HAW-EB3 5613433 YP_001474951.1 CDS Ssed_3219 NC_009831.1 3907135 3907677 R hypothetical protein complement(3907135..3907677) Shewanella sediminis HAW-EB3 5613672 YP_001474952.1 CDS Ssed_3220 NC_009831.1 3908002 3910308 R KEGG: slo:Shew_2669 penicillin amidase; penicillin amidase complement(3908002..3910308) Shewanella sediminis HAW-EB3 5613673 YP_001474953.1 CDS Ssed_3221 NC_009831.1 3910442 3911338 R KEGG: slo:Shew_2670 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3910442..3911338) Shewanella sediminis HAW-EB3 5613674 YP_001474954.1 CDS Ssed_3222 NC_009831.1 3911803 3912753 R KEGG: slo:Shew_2671 alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase complement(3911803..3912753) Shewanella sediminis HAW-EB3 5613675 YP_001474955.1 CDS Ssed_3223 NC_009831.1 3913091 3913681 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(3913091..3913681) Shewanella sediminis HAW-EB3 5613798 YP_001474956.1 CDS Ssed_3224 NC_009831.1 3914060 3914911 R KEGG: drm:Dred_0577 MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase complement(3914060..3914911) Shewanella sediminis HAW-EB3 5613799 YP_001474957.1 CDS Ssed_3225 NC_009831.1 3915094 3915879 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(3915094..3915879) Shewanella sediminis HAW-EB3 5613800 YP_001474958.1 CDS caiC NC_009831.1 3915951 3917504 R KEGG: slo:Shew_2673 AMP-dependent synthetase and ligase; crotonobetaine/carnitine-CoA ligase complement(3915951..3917504) Shewanella sediminis HAW-EB3 5613801 YP_001474959.1 CDS Ssed_3227 NC_009831.1 3917515 3918741 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase complement(3917515..3918741) Shewanella sediminis HAW-EB3 5613763 YP_001474960.1 CDS Ssed_3228 NC_009831.1 3918953 3920089 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(3918953..3920089) Shewanella sediminis HAW-EB3 5613764 YP_001474961.1 CDS Ssed_3229 NC_009831.1 3920146 3921690 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(3920146..3921690) Shewanella sediminis HAW-EB3 5613765 YP_001474962.1 CDS Ssed_3230 NC_009831.1 3922807 3923580 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 3922807..3923580 Shewanella sediminis HAW-EB3 5611630 YP_001474963.1 CDS Ssed_3231 NC_009831.1 3923589 3924533 D KEGG: slo:Shew_2678 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 3923589..3924533 Shewanella sediminis HAW-EB3 5611631 YP_001474964.1 CDS Ssed_3232 NC_009831.1 3924625 3925917 D KEGG: slo:Shew_2679 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3924625..3925917 Shewanella sediminis HAW-EB3 5611632 YP_001474965.1 CDS Ssed_3233 NC_009831.1 3925914 3926201 D KEGG: slo:Shew_2680 ferredoxin; ferredoxin 3925914..3926201 Shewanella sediminis HAW-EB3 5611633 YP_001474966.1 CDS Ssed_3234 NC_009831.1 3926712 3928049 D KEGG: slo:Shew_2681 general substrate transporter; general substrate transporter 3926712..3928049 Shewanella sediminis HAW-EB3 5614060 YP_001474967.1 CDS Ssed_3235 NC_009831.1 3928419 3929552 D KEGG: slo:Shew_2682 hypothetical protein; hypothetical protein 3928419..3929552 Shewanella sediminis HAW-EB3 5614061 YP_001474968.1 CDS Ssed_3236 NC_009831.1 3929723 3931357 D KEGG: aha:AHA_1709 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 3929723..3931357 Shewanella sediminis HAW-EB3 5614062 YP_001474969.1 CDS Ssed_3237 NC_009831.1 3931514 3931780 R hypothetical protein complement(3931514..3931780) Shewanella sediminis HAW-EB3 5614063 YP_001474970.1 CDS Ssed_3238 NC_009831.1 3931968 3932219 D KEGG: sfr:Sfri_3228 hypothetical protein; hypothetical protein 3931968..3932219 Shewanella sediminis HAW-EB3 5613109 YP_001474971.1 CDS Ssed_3239 NC_009831.1 3932235 3932678 R KEGG: slo:Shew_3184 hypothetical protein; hypothetical protein complement(3932235..3932678) Shewanella sediminis HAW-EB3 5613110 YP_001474972.1 CDS Ssed_3240 NC_009831.1 3933091 3933999 R KEGG: vvu:VV2_0173 transcriptional regulator; transcriptional regulator complement(3933091..3933999) Shewanella sediminis HAW-EB3 5613111 YP_001474973.1 CDS Ssed_3241 NC_009831.1 3934167 3934601 D KEGG: vvu:VV2_0174 hypothetical protein; hypothetical protein 3934167..3934601 Shewanella sediminis HAW-EB3 5613112 YP_001474974.1 CDS Ssed_3242 NC_009831.1 3934779 3937214 R KEGG: cps:CPS_1347 TonB-dependent receptor; TonB-dependent receptor complement(3934779..3937214) Shewanella sediminis HAW-EB3 5614030 YP_001474975.1 CDS Ssed_3243 NC_009831.1 3937439 3937975 R KEGG: gme:Gmet_2801 hypothetical protein; hypothetical protein complement(3937439..3937975) Shewanella sediminis HAW-EB3 5614031 YP_001474976.1 CDS Ssed_3244 NC_009831.1 3938038 3939024 R KEGG: shm:Shewmr7_3906 hypothetical protein; hypothetical protein complement(3938038..3939024) Shewanella sediminis HAW-EB3 5614032 YP_001474977.1 CDS Ssed_3245 NC_009831.1 3939309 3939635 D KEGG: slo:Shew_2694 propeptide, PepSY amd peptidase M4; propeptide, PepSY amd peptidase M4 3939309..3939635 Shewanella sediminis HAW-EB3 5614033 YP_001474978.1 CDS Ssed_3246 NC_009831.1 3939689 3940384 D KEGG: spc:Sputcn32_3852 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3939689..3940384 Shewanella sediminis HAW-EB3 5612784 YP_001474979.1 CDS Ssed_3247 NC_009831.1 3940377 3941786 D KEGG: pin:Ping_0281 sensor histidine kinase with ATPase domain; sensor histidine kinase 3940377..3941786 Shewanella sediminis HAW-EB3 5612785 YP_001474980.1 CDS Ssed_3248 NC_009831.1 3941930 3943351 D KEGG: slo:Shew_2697 hypothetical protein; hypothetical protein 3941930..3943351 Shewanella sediminis HAW-EB3 5612786 YP_001474981.1 CDS Ssed_3249 NC_009831.1 3943486 3943998 R KEGG: she:Shewmr4_2687 hypothetical protein; hypothetical protein complement(3943486..3943998) Shewanella sediminis HAW-EB3 5613872 YP_001474982.1 CDS Ssed_3250 NC_009831.1 3944091 3944663 R KEGG: she:Shewmr4_2688 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(3944091..3944663) Shewanella sediminis HAW-EB3 5613873 YP_001474983.1 CDS Ssed_3251 NC_009831.1 3944786 3946369 D KEGG: vch:VC1585 catalase; catalase 3944786..3946369 Shewanella sediminis HAW-EB3 5613874 YP_001474984.1 CDS Ssed_3252 NC_009831.1 3946790 3947164 D KEGG: vvy:VVA0293 AnkB protein; AnkB protein 3946790..3947164 Shewanella sediminis HAW-EB3 5613875 YP_001474985.1 CDS Ssed_3253 NC_009831.1 3947230 3947994 R KEGG: hch:HCH_05115 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein complement(3947230..3947994) Shewanella sediminis HAW-EB3 5613719 YP_001474986.1 CDS Ssed_3254 NC_009831.1 3948375 3949778 D KEGG: pha:PSHAa1481 hypothetical protein; hypothetical protein 3948375..3949778 Shewanella sediminis HAW-EB3 5613720 YP_001474987.1 CDS Ssed_3255 NC_009831.1 3949993 3950508 D KEGG: slo:Shew_1660 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3949993..3950508 Shewanella sediminis HAW-EB3 5613721 YP_001474988.1 CDS Ssed_3256 NC_009831.1 3950608 3952284 R KEGG: ilo:IL2343 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis protein complement(3950608..3952284) Shewanella sediminis HAW-EB3 5613722 YP_001474989.1 CDS Ssed_3257 NC_009831.1 3952313 3953209 R KEGG: pna:Pnap_1406 hypothetical protein; hypothetical protein complement(3952313..3953209) Shewanella sediminis HAW-EB3 5614186 YP_001474990.1 CDS Ssed_3258 NC_009831.1 3953508 3955154 R KEGG: slo:Shew_3024 amidohydrolase 3; amidohydrolase 3 complement(3953508..3955154) Shewanella sediminis HAW-EB3 5614187 YP_001474991.1 CDS Ssed_3259 NC_009831.1 3955327 3956937 R KEGG: cch:Cag_1048 hypothetical protein; hypothetical protein complement(3955327..3956937) Shewanella sediminis HAW-EB3 5614188 YP_001474992.1 CDS Ssed_3260 NC_009831.1 3957500 3958384 R KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3957500..3958384) Shewanella sediminis HAW-EB3 5614189 YP_001474993.1 CDS Ssed_3261 NC_009831.1 3958393 3960501 R KEGG: mag:amb3617 hypothetical protein YddU; diguanylate cyclase complement(3958393..3960501) Shewanella sediminis HAW-EB3 5614142 YP_001474994.1 CDS Ssed_3262 NC_009831.1 3960467 3961828 R KEGG: sus:Acid_7220 cytochrome c family protein; hypothetical protein complement(3960467..3961828) Shewanella sediminis HAW-EB3 5614143 YP_001474995.1 CDS Ssed_3263 NC_009831.1 3962000 3962425 R hypothetical protein complement(3962000..3962425) Shewanella sediminis HAW-EB3 5614144 YP_001474996.1 CDS Ssed_3264 NC_009831.1 3962654 3964324 D KEGG: cps:CPS_2717 sulfatase; sulfatase 3962654..3964324 Shewanella sediminis HAW-EB3 5614145 YP_001474997.1 CDS Ssed_3265 NC_009831.1 3964436 3965134 R KEGG: ppr:PBPRB1023 hypothetical ribosomal small subunit pseudouridine synthase A; ribosomal small subunit pseudouridine synthase A complement(3964436..3965134) Shewanella sediminis HAW-EB3 5613223 YP_001474998.1 CDS Ssed_3266 NC_009831.1 3965260 3966879 R KEGG: pha:PSHAb0412 uncharacterized dehydrogenase; dehydrogenase complement(3965260..3966879) Shewanella sediminis HAW-EB3 5613224 YP_001474999.1 CDS Ssed_3267 NC_009831.1 3967151 3967474 D KEGG: pmy:Pmen_3019 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3967151..3967474 Shewanella sediminis HAW-EB3 5613225 YP_001475000.1 CDS Ssed_3268 NC_009831.1 3967999 3968361 D KEGG: slo:Shew_2700 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3967999..3968361 Shewanella sediminis HAW-EB3 5614096 YP_001475001.1 CDS Ssed_3269 NC_009831.1 3968717 3970519 D KEGG: gme:Gmet_0018 metal dependent phosphohydrolase; response regulator 3968717..3970519 Shewanella sediminis HAW-EB3 5614097 YP_001475002.1 CDS Ssed_3270 NC_009831.1 3970549 3971091 R hypothetical protein complement(3970549..3971091) Shewanella sediminis HAW-EB3 5614098 YP_001475003.1 CDS Ssed_3271 NC_009831.1 3971382 3972086 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 3971382..3972086 Shewanella sediminis HAW-EB3 5614099 YP_001475004.1 CDS Ssed_3272 NC_009831.1 3972230 3973408 D KEGG: shn:Shewana3_2502 major facilitator superfamily MFS_1; hypothetical protein 3972230..3973408 Shewanella sediminis HAW-EB3 5613676 YP_001475005.1 CDS Ssed_3273 NC_009831.1 3973739 3974455 R KEGG: son:SO2717 cyclic nucleotide binding protein; cyclic nucleotide binding protein complement(3973739..3974455) Shewanella sediminis HAW-EB3 5613677 YP_001475006.1 CDS Ssed_3274 NC_009831.1 3974736 3975599 D KEGG: cps:CPS_4656 lipoprotein; lipoprotein 3974736..3975599 Shewanella sediminis HAW-EB3 5613678 YP_001475007.1 CDS Ssed_3275 NC_009831.1 3975777 3976559 R KEGG: son:SO3488 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(3975777..3976559) Shewanella sediminis HAW-EB3 5613679 YP_001475008.1 CDS Ssed_3276 NC_009831.1 3976661 3977818 D KEGG: aha:AHA_0012 multidrug resistance protein D; multidrug resistance protein D 3976661..3977818 Shewanella sediminis HAW-EB3 5612703 YP_001475009.1 CDS Ssed_3277 NC_009831.1 3977917 3978960 R hypothetical protein complement(3977917..3978960) Shewanella sediminis HAW-EB3 5612704 YP_001475010.1 CDS Ssed_3278 NC_009831.1 3979642 3980466 R KEGG: sfr:Sfri_0868 hypothetical protein; hypothetical protein complement(3979642..3980466) Shewanella sediminis HAW-EB3 5612705 YP_001475011.1 CDS Ssed_3279 NC_009831.1 3980623 3981882 R KEGG: cps:CPS_3064 lipoprotein; lipoprotein complement(3980623..3981882) Shewanella sediminis HAW-EB3 5612706 YP_001475012.1 CDS Ssed_3280 NC_009831.1 3982093 3982779 D KEGG: cps:CPS_3065 DNA-binding response regulator; DNA-binding response regulator 3982093..3982779 Shewanella sediminis HAW-EB3 5610446 YP_001475013.1 CDS Ssed_3281 NC_009831.1 3982772 3984223 D KEGG: cps:CPS_3066 sensor histidine kinase; sensor histidine kinase 3982772..3984223 Shewanella sediminis HAW-EB3 5610447 YP_001475014.1 CDS Ssed_3282 NC_009831.1 3984220 3984678 R KEGG: sbl:Sbal_1670 hypothetical protein; hypothetical protein complement(3984220..3984678) Shewanella sediminis HAW-EB3 5610448 YP_001475015.1 CDS Ssed_3283 NC_009831.1 3984893 3986182 D KEGG: shw:Sputw3181_3244 O-acetylhomoserine/O-acetylserine sulfhydrylase; O-acetylhomoserine aminocarboxypropyltransferase 3984893..3986182 Shewanella sediminis HAW-EB3 5610449 YP_001475016.1 CDS Ssed_3284 NC_009831.1 3986440 3988377 D KEGG: sbl:Sbal_3681 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 3986440..3988377 Shewanella sediminis HAW-EB3 5610032 YP_001475017.1 CDS Ssed_3285 NC_009831.1 3988497 3989231 R KEGG: slo:Shew_2715 protein of unknown function DUF599; hypothetical protein complement(3988497..3989231) Shewanella sediminis HAW-EB3 5610033 YP_001475018.1 CDS Ssed_3286 NC_009831.1 3989985 3992129 D KEGG: saz:Sama_1211 decaheme cytochrome c MtrF; hypothetical protein 3989985..3992129 Shewanella sediminis HAW-EB3 5610034 YP_001475019.1 CDS Ssed_3287 NC_009831.1 3992348 3993964 D KEGG: slo:Shew_2716 peptidase S41; peptidase S41 3992348..3993964 Shewanella sediminis HAW-EB3 5610399 YP_001475020.1 CDS Ssed_3288 NC_009831.1 3993988 3994368 D KEGG: slo:Shew_2717 hypothetical protein; hypothetical protein 3993988..3994368 Shewanella sediminis HAW-EB3 5610400 YP_001475021.1 CDS Ssed_3289 NC_009831.1 3994612 3997599 D KEGG: rme:Rmet_4552 curculin-like (mannose-binding) lectin; PKD repeat-containing protein 3994612..3997599 Shewanella sediminis HAW-EB3 5610401 YP_001475022.1 CDS Ssed_3290 NC_009831.1 3997753 3999579 R KEGG: slo:Shew_2720 peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(3997753..3999579) Shewanella sediminis HAW-EB3 5610402 YP_001475023.1 CDS Ssed_3291 NC_009831.1 3999883 4000554 D KEGG: slo:Shew_2727 hypothetical protein; hypothetical protein 3999883..4000554 Shewanella sediminis HAW-EB3 5611582 YP_001475024.1 CDS Ssed_3292 NC_009831.1 4000612 4001280 D KEGG: ppr:PBPRB0681 glutathione S-transferase; glutathione S-transferase 4000612..4001280 Shewanella sediminis HAW-EB3 5611583 YP_001475025.1 CDS Ssed_3293 NC_009831.1 4001551 4002342 D KEGG: hch:HCH_03521 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein 4001551..4002342 Shewanella sediminis HAW-EB3 5611584 YP_001475026.1 CDS Ssed_3294 NC_009831.1 4002374 4003045 R KEGG: sat:SYN_02919 6-O-methylguanine DNA methyltransferase; 6-O-methylguanine DNA methyltransferase complement(4002374..4003045) Shewanella sediminis HAW-EB3 5611585 YP_001475027.1 CDS Ssed_3295 NC_009831.1 4003559 4004938 D KEGG: shn:Shewana3_2867 Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 4003559..4004938 Shewanella sediminis HAW-EB3 5612201 YP_001475028.1 CDS Ssed_3296 NC_009831.1 4005437 4006960 R KEGG: sbl:Sbal_1389 diguanylate cyclase; diguanylate cyclase complement(4005437..4006960) Shewanella sediminis HAW-EB3 5612202 YP_001475029.1 CDS Ssed_3297 NC_009831.1 4007391 4007930 R KEGG: slo:Shew_2740 YfaZ family protein; hypothetical protein complement(4007391..4007930) Shewanella sediminis HAW-EB3 5612203 YP_001475030.1 CDS Ssed_3298 NC_009831.1 4008210 4008695 D KEGG: slo:Shew_2741 glutathione peroxidase; glutathione peroxidase 4008210..4008695 Shewanella sediminis HAW-EB3 5612204 YP_001475031.1 CDS Ssed_3299 NC_009831.1 4009301 4011094 R KEGG: slo:Shew_2742 peptidase M1, membrane alanine aminopeptidase; peptidase M1, membrane alanine aminopeptidase complement(4009301..4011094) Shewanella sediminis HAW-EB3 5610411 YP_001475032.1 CDS Ssed_3300 NC_009831.1 4011249 4012133 D KEGG: slo:Shew_2743 microbial collagenase; collagenase 4011249..4012133 Shewanella sediminis HAW-EB3 5610412 YP_001475033.1 CDS Ssed_3301 NC_009831.1 4013851 4014822 R KEGG: slo:Shew_2747 phosphate binding protein; phosphate binding protein complement(4013851..4014822) Shewanella sediminis HAW-EB3 5610413 YP_001475034.1 CDS Ssed_3302 NC_009831.1 4015060 4016379 R KEGG: shn:Shewana3_2878 PAS/PAC sensor protein; PAS/PAC sensor protein complement(4015060..4016379) Shewanella sediminis HAW-EB3 5610414 YP_001475035.1 CDS Ssed_3303 NC_009831.1 4016475 4017164 R KEGG: slo:Shew_2749 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(4016475..4017164) Shewanella sediminis HAW-EB3 5614013 YP_001475036.1 CDS Ssed_3304 NC_009831.1 4017411 4018355 R KEGG: slo:Shew_2750 porin, gram-negative type; porin complement(4017411..4018355) Shewanella sediminis HAW-EB3 5614014 YP_001475037.1 CDS Ssed_3305 NC_009831.1 4018390 4018665 D hypothetical protein 4018390..4018665 Shewanella sediminis HAW-EB3 5614015 YP_001475038.1 CDS rdgC NC_009831.1 4018647 4019558 D Required for efficient pilin antigenic variation; recombination associated protein 4018647..4019558 Shewanella sediminis HAW-EB3 5610837 YP_001475039.1 CDS Ssed_3307 NC_009831.1 4019643 4021439 R KEGG: slo:Shew_2752 peptidase M61 domain protein; peptidase M61 domain-containing protein complement(4019643..4021439) Shewanella sediminis HAW-EB3 5610838 YP_001475040.1 CDS Ssed_3308 NC_009831.1 4021615 4023771 D KEGG: slo:Shew_2753 tetratricopeptide TPR_2 repeat protein; hypothetical protein 4021615..4023771 Shewanella sediminis HAW-EB3 5610839 YP_001475041.1 CDS Ssed_3309 NC_009831.1 4024096 4025640 D KEGG: slo:Shew_2754 diguanylate cyclase; diguanylate cyclase 4024096..4025640 Shewanella sediminis HAW-EB3 5610840 YP_001475042.1 CDS Ssed_3310 NC_009831.1 4025750 4027102 D KEGG: slo:Shew_2755 conserved hypothetical protein 730; hypothetical protein 4025750..4027102 Shewanella sediminis HAW-EB3 5613569 YP_001475043.1 CDS xni NC_009831.1 4027213 4027980 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 4027213..4027980 Shewanella sediminis HAW-EB3 5613570 YP_001475044.1 CDS Ssed_3312 NC_009831.1 4028140 4028553 D KEGG: slo:Shew_2757 hypothetical protein; hypothetical protein 4028140..4028553 Shewanella sediminis HAW-EB3 5613571 YP_001475045.1 CDS Ssed_3313 NC_009831.1 4029004 4029531 D hypothetical protein 4029004..4029531 Shewanella sediminis HAW-EB3 5613572 YP_001475046.1 CDS Ssed_3314 NC_009831.1 4029964 4030563 R KEGG: aha:AHA_0849 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(4029964..4030563) Shewanella sediminis HAW-EB3 5614138 YP_001475047.1 CDS Ssed_3315 NC_009831.1 4030567 4031046 R KEGG: slo:Shew_2758 hypothetical protein; hypothetical protein complement(4030567..4031046) Shewanella sediminis HAW-EB3 5614139 YP_001475048.1 CDS Ssed_3316 NC_009831.1 4031095 4031754 R KEGG: cte:CT0481 multiple antibiotic resistance protein; multiple antibiotic resistance protein complement(4031095..4031754) Shewanella sediminis HAW-EB3 5614140 YP_001475049.1 CDS Ssed_3317 NC_009831.1 4031879 4034752 R KEGG: slo:Shew_2759 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(4031879..4034752) Shewanella sediminis HAW-EB3 5614141 YP_001475050.1 CDS Ssed_3318 NC_009831.1 4034985 4035992 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 4034985..4035992 Shewanella sediminis HAW-EB3 5610480 YP_001475051.1 CDS Ssed_3319 NC_009831.1 4036172 4037254 R KEGG: slo:Shew_2761 hypothetical protein; RNA 2'-O-ribose methyltransferase complement(4036172..4037254) Shewanella sediminis HAW-EB3 5610481 YP_001475052.1 CDS Ssed_3320 NC_009831.1 4037465 4037854 R KEGG: slo:Shew_2762 protein of unknown function DUF423; hypothetical protein complement(4037465..4037854) Shewanella sediminis HAW-EB3 5610482 YP_001475053.1 CDS Ssed_3321 NC_009831.1 4037847 4038521 R KEGG: slo:Shew_2763 dienelactone hydrolase; dienelactone hydrolase complement(4037847..4038521) Shewanella sediminis HAW-EB3 5610483 YP_001475054.1 CDS Ssed_3322 NC_009831.1 4038502 4039413 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(4038502..4039413) Shewanella sediminis HAW-EB3 5610561 YP_001475055.1 CDS Ssed_3323 NC_009831.1 4039595 4039822 D KEGG: slo:Shew_2765 hypothetical protein; hypothetical protein 4039595..4039822 Shewanella sediminis HAW-EB3 5610562 YP_001475056.1 CDS Ssed_3324 NC_009831.1 4040090 4041544 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(4040090..4041544) Shewanella sediminis HAW-EB3 5610563 YP_001475057.1 CDS motB NC_009831.1 4041741 4042718 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(4041741..4042718) Shewanella sediminis HAW-EB3 5611171 YP_001475058.1 CDS Ssed_3326 NC_009831.1 4042723 4043490 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(4042723..4043490) Shewanella sediminis HAW-EB3 5611172 YP_001475059.1 CDS Ssed_3327 NC_009831.1 4043925 4044164 D KEGG: shw:Sputw3181_2829 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 4043925..4044164 Shewanella sediminis HAW-EB3 5611173 YP_001475060.1 CDS Ssed_3328 NC_009831.1 4044165 4045046 D KEGG: slo:Shew_2770 polyprenyl synthetase; polyprenyl synthetase 4044165..4045046 Shewanella sediminis HAW-EB3 5611174 YP_001475061.1 CDS Ssed_3329 NC_009831.1 4045067 4046932 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 4045067..4046932 Shewanella sediminis HAW-EB3 5610276 YP_001475062.1 CDS Ssed_3330 NC_009831.1 4047032 4047661 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(4047032..4047661) Shewanella sediminis HAW-EB3 5610277 YP_001475063.1 CDS ppnK NC_009831.1 4047710 4048633 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 4047710..4048633 Shewanella sediminis HAW-EB3 5610278 YP_001475064.1 CDS Ssed_3332 NC_009831.1 4048697 4049785 R KEGG: slo:Shew_2774 TonB family protein; TonB family protein complement(4048697..4049785) Shewanella sediminis HAW-EB3 5610279 YP_001475065.1 CDS Ssed_3333 NC_009831.1 4049933 4051279 R KEGG: sbl:Sbal_1342 multi antimicrobial extrusion protein MatE; multi anti extrusion protein MatE complement(4049933..4051279) Shewanella sediminis HAW-EB3 5609607 YP_001475066.1 CDS Ssed_3334 NC_009831.1 4051333 4052388 R KEGG: sbl:Sbal_1338 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K complement(4051333..4052388) Shewanella sediminis HAW-EB3 5609608 YP_001475067.1 CDS Ssed_3335 NC_009831.1 4052708 4054099 D KEGG: vpa:VPA0754 hypothetical protein; hypothetical protein 4052708..4054099 Shewanella sediminis HAW-EB3 5609609 YP_001475068.1 CDS Ssed_3336 NC_009831.1 4054188 4055477 R KEGG: sbl:Sbal_1337 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(4054188..4055477) Shewanella sediminis HAW-EB3 5609610 YP_001475069.1 CDS Ssed_3337 NC_009831.1 4055530 4058592 R KEGG: slo:Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(4055530..4058592) Shewanella sediminis HAW-EB3 5609794 YP_001475070.1 CDS Ssed_3338 NC_009831.1 4058895 4059677 D KEGG: slo:Shew_2779 conserved hypothetical amino acid ABC transporter; amino acid ABC transporter 4058895..4059677 Shewanella sediminis HAW-EB3 5609795 YP_001475071.1 CDS Ssed_3339 NC_009831.1 4059809 4060255 D KEGG: sbl:Sbal_3195 thioesterase superfamily protein; thioesterase superfamily protein 4059809..4060255 Shewanella sediminis HAW-EB3 5609796 YP_001475072.1 CDS Ssed_3340 NC_009831.1 4060294 4061796 R KEGG: slo:Shew_2781 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(4060294..4061796) Shewanella sediminis HAW-EB3 5609797 YP_001475073.1 CDS Ssed_3341 NC_009831.1 4061866 4062708 R KEGG: slo:Shew_2782 signal transduction protein; signal transduction protein complement(4061866..4062708) Shewanella sediminis HAW-EB3 5612429 YP_001475074.1 CDS Ssed_3342 NC_009831.1 4063001 4064386 D KEGG: slo:Shew_2783 peptidase U32; peptidase U32 4063001..4064386 Shewanella sediminis HAW-EB3 5612430 YP_001475075.1 CDS Ssed_3343 NC_009831.1 4064404 4064661 D KEGG: slo:Shew_2785 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4064404..4064661 Shewanella sediminis HAW-EB3 5612431 YP_001475076.1 CDS Ssed_3344 NC_009831.1 4064838 4068005 R KEGG: aeh:Mlg_0074 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); signal transduction protein complement(4064838..4068005) Shewanella sediminis HAW-EB3 5612432 YP_001475077.1 CDS Ssed_3345 NC_009831.1 4068360 4068719 D hypothetical protein 4068360..4068719 Shewanella sediminis HAW-EB3 5612111 YP_001475078.1 CDS Ssed_3346 NC_009831.1 4068820 4070073 R KEGG: cps:CPS_0081 response regulator/GGDEF domain protein; response regulator/GGDEF domain-containing protein complement(4068820..4070073) Shewanella sediminis HAW-EB3 5612112 YP_001475079.1 CDS Ssed_3347 NC_009831.1 4070227 4071936 R KEGG: rfr:Rfer_0062 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase complement(4070227..4071936) Shewanella sediminis HAW-EB3 5612113 YP_001475080.1 CDS Ssed_3348 NC_009831.1 4072297 4074063 R KEGG: rme:Rmet_1541 formyl transferase-like protein; formyl transferase-like protein complement(4072297..4074063) Shewanella sediminis HAW-EB3 5610391 YP_001475081.1 CDS Ssed_3349 NC_009831.1 4074147 4074659 R KEGG: son:SO1250 hypothetical protein; hypothetical protein complement(4074147..4074659) Shewanella sediminis HAW-EB3 5610392 YP_001475082.1 CDS Ssed_3350 NC_009831.1 4074834 4075835 D KEGG: shm:Shewmr7_1133 peptidase U32; peptidase U32 4074834..4075835 Shewanella sediminis HAW-EB3 5610393 YP_001475083.1 CDS Ssed_3351 NC_009831.1 4075867 4076727 D KEGG: she:Shewmr4_1060 peptidase U32; peptidase U32 4075867..4076727 Shewanella sediminis HAW-EB3 5610394 YP_001475084.1 CDS Ssed_3352 NC_009831.1 4076755 4077483 R KEGG: sbl:Sbal_3204 hypothetical protein; hypothetical protein complement(4076755..4077483) Shewanella sediminis HAW-EB3 5614225 YP_001475085.1 CDS Ssed_3353 NC_009831.1 4077966 4079351 D KEGG: slo:Shew_2790 nucleoside recognition domain protein; nucleoside recognition domain-containing protein 4077966..4079351 Shewanella sediminis HAW-EB3 5614226 YP_001475086.1 CDS Ssed_3354 NC_009831.1 4079501 4083229 D KEGG: slo:Shew_2791 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 4079501..4083229 Shewanella sediminis HAW-EB3 5614227 YP_001475087.1 CDS Ssed_3355 NC_009831.1 4083328 4083732 D KEGG: slo:Shew_2794 CBS domain containing protein; hypothetical protein 4083328..4083732 Shewanella sediminis HAW-EB3 5614228 YP_001475088.1 CDS Ssed_3356 NC_009831.1 4083762 4085192 R KEGG: slo:Shew_2795 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(4083762..4085192) Shewanella sediminis HAW-EB3 5609828 YP_001475089.1 CDS Ssed_3357 NC_009831.1 4085535 4086002 R hypothetical protein complement(4085535..4086002) Shewanella sediminis HAW-EB3 5609829 YP_001475090.1 CDS Ssed_3358 NC_009831.1 4086215 4086385 D KEGG: slo:Shew_2796 periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 4086215..4086385 Shewanella sediminis HAW-EB3 5609830 YP_001475091.1 CDS Ssed_3359 NC_009831.1 4086441 4087619 D KEGG: slo:Shew_2797 trimethylamine-N-oxide reductase C-type cytochrome TorC; trimethylamine-N-oxide reductase C-type cytochrome TorC 4086441..4087619 Shewanella sediminis HAW-EB3 5609831 YP_001475092.1 CDS Ssed_3360 NC_009831.1 4087725 4090217 D KEGG: sfr:Sfri_1994 trimethylamine-N-oxide reductase TorA; trimethylamine-N-oxide reductase TorA 4087725..4090217 Shewanella sediminis HAW-EB3 5609735 YP_001475093.1 CDS torD NC_009831.1 4090214 4090861 D TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4090214..4090861 Shewanella sediminis HAW-EB3 5609736 YP_001475094.1 CDS Ssed_3362 NC_009831.1 4090978 4091229 R KEGG: sfr:Sfri_2393 hypothetical protein; hypothetical protein complement(4090978..4091229) Shewanella sediminis HAW-EB3 5609737 YP_001475095.1 CDS Ssed_3363 NC_009831.1 4091601 4093223 D KEGG: eba:ebA1004 probable di-heme cytochrome c; hypothetical protein 4091601..4093223 Shewanella sediminis HAW-EB3 5609738 YP_001475096.1 CDS Ssed_3364 NC_009831.1 4093411 4094670 R KEGG: sbl:Sbal_1252 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(4093411..4094670) Shewanella sediminis HAW-EB3 5610080 YP_001475097.1 CDS Ssed_3365 NC_009831.1 4094802 4097831 R KEGG: sfr:Sfri_1992 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(4094802..4097831) Shewanella sediminis HAW-EB3 5610081 YP_001475098.1 CDS Ssed_3366 NC_009831.1 4097982 4099109 D periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 4097982..4099109 Shewanella sediminis HAW-EB3 5610082 YP_001475099.1 CDS Ssed_3367 NC_009831.1 4099332 4100042 R response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR complement(4099332..4100042) Shewanella sediminis HAW-EB3 5610083 YP_001475100.1 CDS Ssed_3368 NC_009831.1 4100284 4100655 D KEGG: slo:Shew_2804 type IV pilus assembly PilZ; type IV pilus assembly PilZ 4100284..4100655 Shewanella sediminis HAW-EB3 5609732 YP_001475101.1 CDS Ssed_3369 NC_009831.1 4101084 4103252 R KEGG: slo:Shew_1752 proprotein convertase, P; hypothetical protein complement(4101084..4103252) Shewanella sediminis HAW-EB3 5609733 YP_001475102.1 CDS Ssed_3370 NC_009831.1 4103992 4105365 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(4103992..4105365) Shewanella sediminis HAW-EB3 5609734 YP_001475103.1 CDS Ssed_3371 NC_009831.1 4105700 4108114 D KEGG: slo:Shew_2808 type IV pilus assembly PilZ; type IV pilus assembly PilZ 4105700..4108114 Shewanella sediminis HAW-EB3 5609591 YP_001475104.1 CDS Ssed_3372 NC_009831.1 4108196 4109140 R KEGG: slo:Shew_2809 alpha/beta hydrolase fold; alpha/beta hydrolase complement(4108196..4109140) Shewanella sediminis HAW-EB3 5609592 YP_001475105.1 CDS Ssed_3373 NC_009831.1 4109371 4110363 R KEGG: slo:Shew_2810 phosphoserine phosphatase SerB; phosphoserine phosphatase complement(4109371..4110363) Shewanella sediminis HAW-EB3 5609593 YP_001475106.1 CDS Ssed_3374 NC_009831.1 4110441 4111187 D KEGG: slo:Shew_2811 membrane protein; membrane protein 4110441..4111187 Shewanella sediminis HAW-EB3 5609594 YP_001475107.1 CDS deoD NC_009831.1 4111366 4112076 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(4111366..4112076) Shewanella sediminis HAW-EB3 5609953 YP_001475108.1 CDS Ssed_3376 NC_009831.1 4112226 4113443 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(4112226..4113443) Shewanella sediminis HAW-EB3 5609954 YP_001475109.1 CDS deoA NC_009831.1 4113457 4114788 R Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase complement(4113457..4114788) Shewanella sediminis HAW-EB3 5609955 YP_001475110.1 CDS Ssed_3378 NC_009831.1 4114973 4115746 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(4114973..4115746) Shewanella sediminis HAW-EB3 5609956 YP_001475111.1 CDS Ssed_3379 NC_009831.1 4116224 4117060 R KEGG: slo:Shew_2816 nucleoside-specific channel-forming protein, Tsx; nucleoside-specific channel-forming protein, Tsx complement(4116224..4117060) Shewanella sediminis HAW-EB3 5609928 YP_001475112.1 CDS Ssed_3380 NC_009831.1 4117453 4118712 R KEGG: shw:Sputw3181_1187 nucleoside transporter; nucleoside transporter complement(4117453..4118712) Shewanella sediminis HAW-EB3 5609929 YP_001475113.1 CDS Ssed_3381 NC_009831.1 4118890 4119726 R KEGG: saz:Sama_0970 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease complement(4118890..4119726) Shewanella sediminis HAW-EB3 5609930 YP_001475114.1 CDS prfC NC_009831.1 4120066 4121646 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(4120066..4121646) Shewanella sediminis HAW-EB3 5609931 YP_001475115.1 CDS Ssed_3383 NC_009831.1 4121933 4122841 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(4121933..4122841) Shewanella sediminis HAW-EB3 5610352 YP_001475116.1 CDS Ssed_3384 NC_009831.1 4123013 4125127 R KEGG: slo:Shew_2822 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase complement(4123013..4125127) Shewanella sediminis HAW-EB3 5610353 YP_001475117.1 CDS Ssed_3385 NC_009831.1 4125316 4127349 D KEGG: slo:Shew_2823 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 4125316..4127349 Shewanella sediminis HAW-EB3 5610354 YP_001475118.1 CDS rpsO NC_009831.1 4127810 4128079 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(4127810..4128079) Shewanella sediminis HAW-EB3 5610355 YP_001475119.1 CDS truB NC_009831.1 4128231 4129196 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(4128231..4129196) Shewanella sediminis HAW-EB3 5610144 YP_001475120.1 CDS rbfA NC_009831.1 4129196 4129627 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(4129196..4129627) Shewanella sediminis HAW-EB3 5610145 YP_001475121.1 CDS infB NC_009831.1 4129716 4132406 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(4129716..4132406) Shewanella sediminis HAW-EB3 5610146 YP_001475122.1 CDS nusA NC_009831.1 4132433 4133932 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(4132433..4133932) Shewanella sediminis HAW-EB3 5610147 YP_001475123.1 CDS Ssed_3391 NC_009831.1 4133961 4134479 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(4133961..4134479) Shewanella sediminis HAW-EB3 5610090 YP_001475124.1 CDS secG NC_009831.1 4134956 4135303 R KEGG: slo:Shew_2830 preprotein translocase, SecG subunit; preprotein translocase subunit SecG complement(4134956..4135303) Shewanella sediminis HAW-EB3 5611255 YP_001475125.1 CDS Ssed_3393 NC_009831.1 4135305 4136087 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4135305..4136087) Shewanella sediminis HAW-EB3 5610092 YP_001475126.1 CDS glmM NC_009831.1 4136297 4137628 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(4136297..4137628) Shewanella sediminis HAW-EB3 5610346 YP_001475127.1 CDS Ssed_3395 NC_009831.1 4138066 4138908 R KEGG: shn:Shewana3_1024 dihydropteroate synthase; dihydropteroate synthase complement(4138066..4138908) Shewanella sediminis HAW-EB3 5610347 YP_001475128.1 CDS Ssed_3396 NC_009831.1 4139044 4141023 R KEGG: slo:Shew_2834 ATP-dependent metalloprotease FtsH; microtubule-severing ATPase complement(4139044..4141023) Shewanella sediminis HAW-EB3 5610348 YP_001475129.1 CDS rrmJ NC_009831.1 4141069 4141698 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase complement(4141069..4141698) Shewanella sediminis HAW-EB3 5610349 YP_001475130.1 CDS Ssed_3398 NC_009831.1 4141790 4142089 D KEGG: slo:Shew_2836 protein of unknown function UPF0044; hypothetical protein 4141790..4142089 Shewanella sediminis HAW-EB3 5609696 YP_001475131.1 CDS Ssed_3399 NC_009831.1 4142302 4143228 R KEGG: sbl:Sbal_3249 protein-export membrane protein SecF; protein-export membrane protein SecF complement(4142302..4143228) Shewanella sediminis HAW-EB3 5609697 YP_001475132.1 CDS secD NC_009831.1 4143230 4145044 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(4143230..4145044) Shewanella sediminis HAW-EB3 5609698 YP_001475133.1 CDS Ssed_3401 NC_009831.1 4145194 4145754 R KEGG: sfr:Sfri_0978 hypothetical protein; hypothetical protein complement(4145194..4145754) Shewanella sediminis HAW-EB3 5609699 YP_001475134.1 CDS Ssed_3402 NC_009831.1 4145847 4146308 R KEGG: shn:Shewana3_1017 transcription elongation factor GreA; transcription elongation factor GreA complement(4145847..4146308) Shewanella sediminis HAW-EB3 5609603 YP_001475135.1 CDS carB NC_009831.1 4146731 4149949 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(4146731..4149949) Shewanella sediminis HAW-EB3 5609604 YP_001475136.1 CDS Ssed_3404 NC_009831.1 4149970 4151127 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(4149970..4151127) Shewanella sediminis HAW-EB3 5609605 YP_001475137.1 CDS Ssed_3405 NC_009831.1 4151305 4152120 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(4151305..4152120) Shewanella sediminis HAW-EB3 5609606 YP_001475138.1 CDS Ssed_3406 NC_009831.1 4152232 4152849 R KEGG: slo:Shew_2841 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(4152232..4152849) Shewanella sediminis HAW-EB3 5609759 YP_001475139.1 CDS Ssed_3407 NC_009831.1 4152932 4153732 R KEGG: slo:Shew_2842 peptidase M48, Ste24p; peptidase M48, Ste24p complement(4152932..4153732) Shewanella sediminis HAW-EB3 5609760 YP_001475140.1 CDS Ssed_3408 NC_009831.1 4154037 4155173 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(4154037..4155173) Shewanella sediminis HAW-EB3 5609761 YP_001475141.1 CDS dnaK NC_009831.1 4155301 4157223 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(4155301..4157223) Shewanella sediminis HAW-EB3 5609762 YP_001475142.1 CDS Ssed_3410 NC_009831.1 4157570 4158493 D KEGG: slo:Shew_2845 protein of unknown function DUF6, transmembrane; hypothetical protein 4157570..4158493 Shewanella sediminis HAW-EB3 5610754 YP_001475143.1 CDS Ssed_3411 NC_009831.1 4158563 4159228 R KEGG: slo:Shew_2846 hypothetical protein; hypothetical protein complement(4158563..4159228) Shewanella sediminis HAW-EB3 5610755 YP_001475144.1 CDS Ssed_3412 NC_009831.1 4159768 4161840 R KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(4159768..4161840) Shewanella sediminis HAW-EB3 5610756 YP_001475145.1 CDS Ssed_3413 NC_009831.1 4162351 4162665 D hypothetical protein 4162351..4162665 Shewanella sediminis HAW-EB3 5610757 YP_001475146.1 CDS Ssed_3414 NC_009831.1 4162737 4163555 R KEGG: sdn:Sden_0822 beta-lactamase; beta-lactamase complement(4162737..4163555) Shewanella sediminis HAW-EB3 5610751 YP_001475147.1 CDS proA NC_009831.1 4163613 4164887 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(4163613..4164887) Shewanella sediminis HAW-EB3 5610752 YP_001475148.1 CDS Ssed_3416 NC_009831.1 4164945 4166063 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(4164945..4166063) Shewanella sediminis HAW-EB3 5610753 YP_001475149.1 CDS Ssed_3417 NC_009831.1 4166222 4167511 R KEGG: slo:Shew_2849 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(4166222..4167511) Shewanella sediminis HAW-EB3 5610689 YP_001475150.1 CDS Ssed_3418 NC_009831.1 4167867 4167965 R KEGG: slo:Shew_2850 hypothetical protein; hypothetical protein complement(4167867..4167965) Shewanella sediminis HAW-EB3 5610690 YP_001475151.1 CDS Ssed_3419 NC_009831.1 4169328 4169426 R KEGG: slo:Shew_2850 hypothetical protein; hypothetical protein complement(4169328..4169426) Shewanella sediminis HAW-EB3 5610691 YP_001475152.1 CDS Ssed_3420 NC_009831.1 4169868 4171403 R KEGG: she:Shewmr4_0949 peptidase M17, leucyl aminopeptidase domain protein; peptidase M17, leucyl aminopeptidase domain-containing protein complement(4169868..4171403) Shewanella sediminis HAW-EB3 5610692 YP_001475153.1 CDS Ssed_3421 NC_009831.1 4171733 4173193 D KEGG: slo:Shew_2852 aminoacyl-histidine dipeptidase; Xaa-His dipeptidase 4171733..4173193 Shewanella sediminis HAW-EB3 5610720 YP_001475154.1 CDS Ssed_3422 NC_009831.1 4173238 4174320 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(4173238..4174320) Shewanella sediminis HAW-EB3 5610721 YP_001475155.1 CDS Ssed_3423 NC_009831.1 4174505 4175482 R KEGG: saz:Sama_2531 GGDEF domain-like protein; diguanylate cyclase complement(4174505..4175482) Shewanella sediminis HAW-EB3 5610722 YP_001475156.1 CDS Ssed_3424 NC_009831.1 4175621 4175842 R KEGG: slo:Shew_2874 protein of unknown function DUF539; hypothetical protein complement(4175621..4175842) Shewanella sediminis HAW-EB3 5610723 YP_001475157.1 CDS Ssed_3425 NC_009831.1 4175902 4176918 R KEGG: slo:Shew_2875 ApbE family lipoprotein; ApbE family lipoprotein complement(4175902..4176918) Shewanella sediminis HAW-EB3 5613576 YP_001475158.1 CDS Ssed_3426 NC_009831.1 4177064 4178311 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(4177064..4178311) Shewanella sediminis HAW-EB3 5613577 YP_001475159.1 CDS Ssed_3427 NC_009831.1 4178357 4178965 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(4178357..4178965) Shewanella sediminis HAW-EB3 5613578 YP_001475160.1 CDS Ssed_3428 NC_009831.1 4178971 4179603 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(4178971..4179603) Shewanella sediminis HAW-EB3 5613579 YP_001475161.1 CDS Ssed_3429 NC_009831.1 4179603 4180397 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(4179603..4180397) Shewanella sediminis HAW-EB3 5610439 YP_001475162.1 CDS Ssed_3430 NC_009831.1 4180390 4181589 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(4180390..4181589) Shewanella sediminis HAW-EB3 5610440 YP_001475163.1 CDS Ssed_3431 NC_009831.1 4181589 4182923 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(4181589..4182923) Shewanella sediminis HAW-EB3 5610441 YP_001475164.1 CDS Ssed_3432 NC_009831.1 4183473 4183982 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(4183473..4183982) Shewanella sediminis HAW-EB3 5610442 YP_001475165.1 CDS Ssed_3433 NC_009831.1 4184384 4184683 R KEGG: slo:Shew_2883 BolA family protein; BolA family protein complement(4184384..4184683) Shewanella sediminis HAW-EB3 5613525 YP_001475166.1 CDS Ssed_3434 NC_009831.1 4184895 4185398 R KEGG: slo:Shew_2884 glycine cleavage system regulatory protein-like protein; glycine cleavage system regulatory protein-like protein complement(4184895..4185398) Shewanella sediminis HAW-EB3 5613526 YP_001475167.1 CDS Ssed_3435 NC_009831.1 4185545 4186240 R KEGG: shw:Sputw3181_3241 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(4185545..4186240) Shewanella sediminis HAW-EB3 5613527 YP_001475168.1 CDS Ssed_3436 NC_009831.1 4186304 4187542 D KEGG: she:Shewmr4_0930 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 4186304..4187542 Shewanella sediminis HAW-EB3 5613528 YP_001475169.1 CDS Ssed_3437 NC_009831.1 4187709 4188272 R KEGG: sbl:Sbal_0715 OmpA-like transmembrane domain protein; OmpA-like transmembrane domain-containing protein complement(4187709..4188272) Shewanella sediminis HAW-EB3 5611564 YP_001475170.1 CDS Ssed_3438 NC_009831.1 4188587 4189654 R KEGG: slo:Shew_2888 hypothetical protein; hypothetical protein complement(4188587..4189654) Shewanella sediminis HAW-EB3 5611565 YP_001475171.1 CDS Ssed_3439 NC_009831.1 4189904 4190470 D KEGG: slo:Shew_2889 uncharacterized lipoprotein; lipoprotein 4189904..4190470 Shewanella sediminis HAW-EB3 5611566 YP_001475172.1 CDS Ssed_3440 NC_009831.1 4190528 4191112 D KEGG: shw:Sputw3181_3352 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 4190528..4191112 Shewanella sediminis HAW-EB3 5609905 YP_001475173.1 CDS Ssed_3441 NC_009831.1 4191197 4191523 D KEGG: slo:Shew_2891 hypothetical protein; hypothetical protein 4191197..4191523 Shewanella sediminis HAW-EB3 5609906 YP_001475174.1 CDS Ssed_3442 NC_009831.1 4191685 4193121 D KEGG: spc:Sputcn32_0819 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4191685..4193121 Shewanella sediminis HAW-EB3 5609907 YP_001475175.1 CDS Ssed_3443 NC_009831.1 4193198 4193683 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(4193198..4193683) Shewanella sediminis HAW-EB3 5609908 YP_001475176.1 CDS Ssed_3444 NC_009831.1 4193786 4194226 D KEGG: shw:Sputw3181_3356 VanZ family protein; VanZ family protein 4193786..4194226 Shewanella sediminis HAW-EB3 5610923 YP_001475177.1 CDS Ssed_3445 NC_009831.1 4194258 4195190 D KEGG: she:Shewmr4_3158 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase 4194258..4195190 Shewanella sediminis HAW-EB3 5610924 YP_001475178.1 CDS Ssed_3446 NC_009831.1 4195405 4196892 D KEGG: ppr:PBPRA1510 sodium-dependent transporter; sodium-dependent transporter 4195405..4196892 Shewanella sediminis HAW-EB3 5610925 YP_001475179.1 CDS Ssed_3447 NC_009831.1 4197198 4197854 D KEGG: slo:Shew_2901 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4197198..4197854 Shewanella sediminis HAW-EB3 5610926 YP_001475180.1 CDS Ssed_3448 NC_009831.1 4197921 4198793 R KEGG: sfr:Sfri_0729 hypothetical protein; hypothetical protein complement(4197921..4198793) Shewanella sediminis HAW-EB3 5610731 YP_001475181.1 CDS Ssed_3449 NC_009831.1 4198979 4200517 R KEGG: saz:Sama_3423 transporter; transporter complement(4198979..4200517) Shewanella sediminis HAW-EB3 5610732 YP_001475182.1 CDS Ssed_3450 NC_009831.1 4200701 4201549 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(4200701..4201549) Shewanella sediminis HAW-EB3 5610733 YP_001475183.1 CDS Ssed_3451 NC_009831.1 4201704 4202957 R KEGG: slo:Shew_2905 protein of unknown function DUF819; hypothetical protein complement(4201704..4202957) Shewanella sediminis HAW-EB3 5610734 YP_001475184.1 CDS Ssed_3452 NC_009831.1 4203303 4204091 R KEGG: slo:Shew_2906 hypothetical protein; hypothetical protein complement(4203303..4204091) Shewanella sediminis HAW-EB3 5613555 YP_001475185.1 CDS Ssed_3453 NC_009831.1 4204091 4204486 R KEGG: shw:Sputw3181_3368 invasion gene expression up-regulator, SirB; invasion gene expression up-regulator, SirB complement(4204091..4204486) Shewanella sediminis HAW-EB3 5613556 YP_001475186.1 CDS Ssed_3454 NC_009831.1 4204635 4205630 R KEGG: slo:Shew_2908 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4204635..4205630) Shewanella sediminis HAW-EB3 5613557 YP_001475187.1 CDS Ssed_3455 NC_009831.1 4205676 4206131 D KEGG: slo:Shew_2909 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4205676..4206131 Shewanella sediminis HAW-EB3 5613558 YP_001475188.1 CDS Ssed_3456 NC_009831.1 4206128 4207315 R KEGG: spc:Sputcn32_0533 flagellar biosynthesis protein; flagellar biosynthesis protein complement(4206128..4207315) Shewanella sediminis HAW-EB3 5613723 YP_001475189.1 CDS Ssed_3457 NC_009831.1 4207715 4208092 R hypothetical protein complement(4207715..4208092) Shewanella sediminis HAW-EB3 5613724 YP_001475190.1 CDS Ssed_3458 NC_009831.1 4209180 4210022 R KEGG: slo:Shew_2911 modification methylase, HemK family; HemK family modification methylase complement(4209180..4210022) Shewanella sediminis HAW-EB3 5613725 YP_001475191.1 CDS prfA NC_009831.1 4210078 4211163 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(4210078..4211163) Shewanella sediminis HAW-EB3 5613726 YP_001475192.1 CDS hemA NC_009831.1 4211177 4212457 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(4211177..4212457) Shewanella sediminis HAW-EB3 5613621 YP_001475193.1 CDS Ssed_3461 NC_009831.1 4212699 4213355 D KEGG: slo:Shew_2914 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 4212699..4213355 Shewanella sediminis HAW-EB3 5613622 YP_001475194.1 CDS ipk NC_009831.1 4213345 4214199 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4213345..4214199 Shewanella sediminis HAW-EB3 5613623 YP_001475195.1 CDS Ssed_3463 NC_009831.1 4214278 4215225 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 4214278..4215225 Shewanella sediminis HAW-EB3 5613529 YP_001475196.1 CDS Ssed_3464 NC_009831.1 4215330 4215662 R KEGG: nph:NP4120A thioredoxin; thioredoxin complement(4215330..4215662) Shewanella sediminis HAW-EB3 5613530 YP_001475197.1 CDS Ssed_3465 NC_009831.1 4215776 4217083 R KEGG: shw:Sputw3181_0585 transcriptional regulator, CadC; DNA-binding winged-HTH domain-containing protein complement(4215776..4217083) Shewanella sediminis HAW-EB3 5613531 YP_001475198.1 CDS Ssed_3466 NC_009831.1 4217288 4219645 R KEGG: slo:Shew_2521 decaheme cytochrome c MtrF; hypothetical protein complement(4217288..4219645) Shewanella sediminis HAW-EB3 5613532 YP_001475199.1 CDS Ssed_3467 NC_009831.1 4222492 4223583 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(4222492..4223583) Shewanella sediminis HAW-EB3 5610237 YP_001475200.1 CDS Ssed_3468 NC_009831.1 4223761 4224345 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(4223761..4224345) Shewanella sediminis HAW-EB3 5613552 YP_001475201.1 CDS Ssed_3469 NC_009831.1 4224650 4225858 R KEGG: slo:Shew_2921 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(4224650..4225858) Shewanella sediminis HAW-EB3 5613553 YP_001475202.1 CDS Ssed_3470 NC_009831.1 4226158 4226475 D KEGG: sbl:Sbal_3260 hypothetical protein; hypothetical protein 4226158..4226475 Shewanella sediminis HAW-EB3 5613554 YP_001475203.1 CDS Ssed_3471 NC_009831.1 4226571 4227995 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 4226571..4227995 Shewanella sediminis HAW-EB3 5613461 YP_001475204.1 CDS Ssed_3472 NC_009831.1 4228165 4229208 D KEGG: slo:Shew_2924 PhoH family protein; PhoH family protein 4228165..4229208 Shewanella sediminis HAW-EB3 5613462 YP_001475205.1 CDS Ssed_3473 NC_009831.1 4229198 4229674 D KEGG: sfr:Sfri_0711 protein of unknown function UPF0054; metalloprotease 4229198..4229674 Shewanella sediminis HAW-EB3 5613463 YP_001475206.1 CDS Ssed_3474 NC_009831.1 4229701 4230576 D KEGG: slo:Shew_2926 CBS domain containing protein; hypothetical protein 4229701..4230576 Shewanella sediminis HAW-EB3 5613464 YP_001475207.1 CDS lnt NC_009831.1 4230617 4232176 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 4230617..4232176 Shewanella sediminis HAW-EB3 5613361 YP_001475208.1 CDS Ssed_3476 NC_009831.1 4232424 4233320 D KEGG: sfr:Sfri_1536 diguanylate cyclase; diguanylate cyclase 4232424..4233320 Shewanella sediminis HAW-EB3 5613362 YP_001475209.1 CDS Ssed_3477 NC_009831.1 4233476 4235344 R KEGG: ppr:PBPRA1466 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(4233476..4235344) Shewanella sediminis HAW-EB3 5613363 YP_001475210.1 CDS Ssed_3478 NC_009831.1 4235733 4236233 R KEGG: slo:Shew_2928 protein of unknown function DUF1451; hypothetical protein complement(4235733..4236233) Shewanella sediminis HAW-EB3 5613364 YP_001475211.1 CDS leuS NC_009831.1 4236355 4238946 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 4236355..4238946 Shewanella sediminis HAW-EB3 5613276 YP_001475212.1 CDS Ssed_3480 NC_009831.1 4239084 4239578 D KEGG: slo:Shew_2930 rare lipoprotein B; rare lipoprotein B 4239084..4239578 Shewanella sediminis HAW-EB3 5613277 YP_001475213.1 CDS Ssed_3481 NC_009831.1 4239646 4240686 D KEGG: slo:Shew_2931 DNA polymerase III, delta subunit; DNA-directed DNA polymerase 4239646..4240686 Shewanella sediminis HAW-EB3 5613278 YP_001475214.1 CDS Ssed_3482 NC_009831.1 4240888 4241523 D KEGG: slo:Shew_2932 nicotinate (nicotinamide) nucleotide adenylyltransferase; adenosine deaminase 4240888..4241523 Shewanella sediminis HAW-EB3 5613279 YP_001475215.1 CDS Ssed_3483 NC_009831.1 4241640 4241969 D KEGG: slo:Shew_2933 iojap-like protein; iojap family protein 4241640..4241969 Shewanella sediminis HAW-EB3 5612834 YP_001475216.1 CDS Ssed_3484 NC_009831.1 4241969 4242439 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 4241969..4242439 Shewanella sediminis HAW-EB3 5612835 YP_001475217.1 CDS Ssed_3485 NC_009831.1 4242522 4244378 D KEGG: slo:Shew_2935 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 4242522..4244378 Shewanella sediminis HAW-EB3 5612836 YP_001475218.1 CDS Ssed_3486 NC_009831.1 4244375 4245481 D KEGG: slo:Shew_2936 rod shape-determining protein RodA; rod shape-determining protein RodA 4244375..4245481 Shewanella sediminis HAW-EB3 5612731 YP_001475219.1 CDS Ssed_3487 NC_009831.1 4245673 4246692 D KEGG: shn:Shewana3_0993 lytic murein transglycosylase B; lytic murein transglycosylase B 4245673..4246692 Shewanella sediminis HAW-EB3 5612732 YP_001475220.1 CDS Ssed_3488 NC_009831.1 4246679 4247476 D KEGG: slo:Shew_2938 rare lipoprotein A; rare lipoprotein A 4246679..4247476 Shewanella sediminis HAW-EB3 5612733 YP_001475221.1 CDS Ssed_3489 NC_009831.1 4247622 4248809 D KEGG: slo:Shew_2939 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 4247622..4248809 Shewanella sediminis HAW-EB3 5612734 YP_001475222.1 CDS Ssed_3490 NC_009831.1 4248948 4249214 D KEGG: shw:Sputw3181_1029 protein of unknown function DUF493; hypothetical protein 4248948..4249214 Shewanella sediminis HAW-EB3 5613048 YP_001475223.1 CDS lipB NC_009831.1 4249364 4250023 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 4249364..4250023 Shewanella sediminis HAW-EB3 5613049 YP_001475224.1 CDS Ssed_3492 NC_009831.1 4250016 4250981 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 4250016..4250981 Shewanella sediminis HAW-EB3 5613050 YP_001475225.1 CDS Ssed_3493 NC_009831.1 4251040 4251501 R KEGG: saz:Sama_2596 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(4251040..4251501) Shewanella sediminis HAW-EB3 5613051 YP_001475226.1 CDS Ssed_3494 NC_009831.1 4251498 4251842 R KEGG: sfr:Sfri_0690 hypothetical protein; hypothetical protein complement(4251498..4251842) Shewanella sediminis HAW-EB3 5612718 YP_001475227.1 CDS Ssed_3495 NC_009831.1 4259496 4260275 R KEGG: saz:Sama_2600 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(4259496..4260275) Shewanella sediminis HAW-EB3 5609976 YP_001475228.1 CDS Ssed_3496 NC_009831.1 4260413 4260847 D KEGG: sbl:Sbal_1020 hypothetical protein; hypothetical protein 4260413..4260847 Shewanella sediminis HAW-EB3 5612720 YP_001475229.1 CDS Ssed_3497 NC_009831.1 4261038 4263611 R KEGG: slo:Shew_2948 ATPase AAA-2 domain protein; ATPase complement(4261038..4263611) Shewanella sediminis HAW-EB3 5612721 YP_001475230.1 CDS Ssed_3498 NC_009831.1 4263716 4264498 R KEGG: sfr:Sfri_0668 protein of unknown function DUF152; hypothetical protein complement(4263716..4264498) Shewanella sediminis HAW-EB3 5612672 YP_001475231.1 CDS Ssed_3499 NC_009831.1 4264502 4265473 R KEGG: slo:Shew_2950 pseudouridine synthase, RluA family; lysozyme complement(4264502..4265473) Shewanella sediminis HAW-EB3 5612673 YP_001475232.1 CDS Ssed_3500 NC_009831.1 4265509 4266357 D KEGG: shm:Shewmr7_3075 lipoprotein; lipoprotein 4265509..4266357 Shewanella sediminis HAW-EB3 5612674 YP_001475233.1 CDS Ssed_3501 NC_009831.1 4266840 4268420 R KEGG: slo:Shew_2953 diguanylate cyclase; diguanylate cyclase complement(4266840..4268420) Shewanella sediminis HAW-EB3 5609977 YP_001475234.1 CDS Ssed_3502 NC_009831.1 4268478 4270340 R KEGG: slo:Shew_2954 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4268478..4270340) Shewanella sediminis HAW-EB3 5612608 YP_001475235.1 CDS Ssed_3503 NC_009831.1 4270622 4271578 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 4270622..4271578 Shewanella sediminis HAW-EB3 5612609 YP_001475236.1 CDS Ssed_3504 NC_009831.1 4271814 4272350 D KEGG: slo:Shew_2956 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4271814..4272350 Shewanella sediminis HAW-EB3 5612610 YP_001475237.1 CDS Ssed_3505 NC_009831.1 4272350 4272883 D KEGG: slo:Shew_2957 hypothetical protein; hypothetical protein 4272350..4272883 Shewanella sediminis HAW-EB3 5612611 YP_001475238.1 CDS Ssed_3506 NC_009831.1 4272880 4273824 D KEGG: slo:Shew_2958 hypothetical protein; hypothetical protein 4272880..4273824 Shewanella sediminis HAW-EB3 5612605 YP_001475239.1 CDS Ssed_3507 NC_009831.1 4273897 4274667 R KEGG: shw:Sputw3181_3383 pseudouridine synthase; pseudouridine synthase complement(4273897..4274667) Shewanella sediminis HAW-EB3 5612606 YP_001475240.1 CDS Ssed_3508 NC_009831.1 4274719 4275264 D KEGG: sbl:Sbal_0686 nodulation protein L; nodulation protein L 4274719..4275264 Shewanella sediminis HAW-EB3 5612607 YP_001475241.1 CDS Ssed_3509 NC_009831.1 4275510 4277594 D KEGG: slo:Shew_2973 endothelin-converting enzyme 1; endothelin-converting protein 1 4275510..4277594 Shewanella sediminis HAW-EB3 5612280 YP_001475242.1 CDS Ssed_3510 NC_009831.1 4277771 4278574 D KEGG: shm:Shewmr7_0786 hypothetical protein; hypothetical protein 4277771..4278574 Shewanella sediminis HAW-EB3 5612281 YP_001475243.1 CDS Ssed_3511 NC_009831.1 4278811 4279212 D KEGG: slo:Shew_2971 hypothetical protein; hypothetical protein 4278811..4279212 Shewanella sediminis HAW-EB3 5612282 YP_001475244.1 CDS Ssed_3512 NC_009831.1 4279349 4279849 D KEGG: slo:Shew_2970 hypothetical protein; hypothetical protein 4279349..4279849 Shewanella sediminis HAW-EB3 5612283 YP_001475245.1 CDS Ssed_3513 NC_009831.1 4279976 4280599 R KEGG: slo:Shew_2968 glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(4279976..4280599) Shewanella sediminis HAW-EB3 5612236 YP_001475246.1 CDS Ssed_3514 NC_009831.1 4280952 4281326 D KEGG: neu:NE0566 domain of unknown function 2:response regulator receiver domain; hypothetical protein 4280952..4281326 Shewanella sediminis HAW-EB3 5612237 YP_001475247.1 CDS Ssed_3515 NC_009831.1 4281510 4282787 D KEGG: shw:Sputw3181_3389 manganese transporter; manganese transporter 4281510..4282787 Shewanella sediminis HAW-EB3 5612238 YP_001475248.1 CDS Ssed_3516 NC_009831.1 4282799 4284196 D KEGG: she:Shewmr4_0756 beta-lactamase; beta-lactamase 4282799..4284196 Shewanella sediminis HAW-EB3 5612239 YP_001475249.1 CDS Ssed_3517 NC_009831.1 4284282 4284746 D KEGG: slo:Shew_2963 protein of unknown function DUF1456; hypothetical protein 4284282..4284746 Shewanella sediminis HAW-EB3 5612350 YP_001475250.1 CDS Ssed_3518 NC_009831.1 4285304 4286992 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 4285304..4286992 Shewanella sediminis HAW-EB3 5612351 YP_001475251.1 CDS Ssed_3519 NC_009831.1 4287626 4287901 D hypothetical protein 4287626..4287901 Shewanella sediminis HAW-EB3 5612352 YP_001475252.1 CDS Ssed_3520 NC_009831.1 4288358 4288795 R KEGG: slo:Shew_2976 hypothetical protein; hypothetical protein complement(4288358..4288795) Shewanella sediminis HAW-EB3 5612353 YP_001475253.1 CDS Ssed_3521 NC_009831.1 4288877 4289401 R KEGG: cps:CPS_1441 PAP2 family protein; PAP2 family protein complement(4288877..4289401) Shewanella sediminis HAW-EB3 5612140 YP_001475254.1 CDS Ssed_3522 NC_009831.1 4289630 4291540 D KEGG: slo:Shew_2977 diguanylate cyclase; diguanylate cyclase 4289630..4291540 Shewanella sediminis HAW-EB3 5612141 YP_001475255.1 CDS Ssed_3523 NC_009831.1 4291541 4292347 R KEGG: she:Shewmr4_3192 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(4291541..4292347) Shewanella sediminis HAW-EB3 5612142 YP_001475256.1 CDS Ssed_3524 NC_009831.1 4292725 4293720 D catalyzes the formation of inosine from adenosine; adenosine deaminase 4292725..4293720 Shewanella sediminis HAW-EB3 5612143 YP_001475257.1 CDS Ssed_3525 NC_009831.1 4293866 4295326 R KEGG: pol:Bpro_2062 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4293866..4295326) Shewanella sediminis HAW-EB3 5612105 YP_001475258.1 CDS Ssed_3526 NC_009831.1 4295811 4297007 D KEGG: slo:Shew_2979 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein 4295811..4297007 Shewanella sediminis HAW-EB3 5612106 YP_001475259.1 CDS Ssed_3527 NC_009831.1 4297067 4297279 R KEGG: slo:Shew_2980 protein of unknown function DUF1458; hypothetical protein complement(4297067..4297279) Shewanella sediminis HAW-EB3 5612107 YP_001475260.1 CDS Ssed_3528 NC_009831.1 4297594 4299150 R KEGG: pnu:Pnuc_1320 alpha/beta hydrolase fold; alpha/beta fold family hydrolase/acetyltransferase-like protein complement(4297594..4299150) Shewanella sediminis HAW-EB3 5612108 YP_001475261.1 CDS Ssed_3529 NC_009831.1 4299168 4300052 R KEGG: bce:BC3312 3-oxoadipate enol-lactonase; 3-oxoadipate enol-lactonase complement(4299168..4300052) Shewanella sediminis HAW-EB3 5612098 YP_001475262.1 CDS Ssed_3530 NC_009831.1 4300229 4301335 D KEGG: mxa:MXAN_0221 lipase; hypothetical protein 4300229..4301335 Shewanella sediminis HAW-EB3 5612099 YP_001475263.1 CDS Ssed_3531 NC_009831.1 4301404 4302738 D KEGG: sat:SYN_03116 hypothetical protein; hypothetical protein 4301404..4302738 Shewanella sediminis HAW-EB3 5612100 YP_001475264.1 CDS Ssed_3532 NC_009831.1 4303122 4304789 D KEGG: sbl:Sbal_0641 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4303122..4304789 Shewanella sediminis HAW-EB3 5612062 YP_001475265.1 CDS Ssed_3533 NC_009831.1 4305052 4306263 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(4305052..4306263) Shewanella sediminis HAW-EB3 5612063 YP_001475266.1 CDS Ssed_3534 NC_009831.1 4306272 4307006 R KEGG: ppr:PBPRB1562 hypothetical 3-oxoacyl-(acyl carrier protein) reductase; 3-oxoacyl-ACP reductase complement(4306272..4307006) Shewanella sediminis HAW-EB3 5612064 YP_001475267.1 CDS Ssed_3535 NC_009831.1 4307338 4308249 D KEGG: ppr:PBPRB1563 hypothetical transcription regulator; transcriptional regulator 4307338..4308249 Shewanella sediminis HAW-EB3 5612065 YP_001475268.1 CDS Ssed_3536 NC_009831.1 4308586 4310175 D KEGG: pth:PTH_0512 acyl CoA:acetate/3-ketoacid CoA transferase; acetate/3-ketoacid CoA transferase 4308586..4310175 Shewanella sediminis HAW-EB3 5611981 YP_001475269.1 CDS Ssed_3537 NC_009831.1 4310297 4310716 D KEGG: cps:CPS_3371 MaoC domain protein; MaoC domain-containing protein 4310297..4310716 Shewanella sediminis HAW-EB3 5611982 YP_001475270.1 CDS Ssed_3538 NC_009831.1 4310738 4311940 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 4310738..4311940 Shewanella sediminis HAW-EB3 5611983 YP_001475271.1 CDS Ssed_3539 NC_009831.1 4312040 4313236 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 4312040..4313236 Shewanella sediminis HAW-EB3 5611984 YP_001475272.1 CDS Ssed_3540 NC_009831.1 4313346 4315484 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 4313346..4315484 Shewanella sediminis HAW-EB3 5611950 YP_001475273.1 CDS Ssed_3541 NC_009831.1 4315709 4316641 D KEGG: ppr:PBPRA2526 hypothetical protein similar to lipase; hypothetical protein 4315709..4316641 Shewanella sediminis HAW-EB3 5611951 YP_001475274.1 CDS Ssed_3542 NC_009831.1 4316856 4318547 R KEGG: slo:Shew_2982 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(4316856..4318547) Shewanella sediminis HAW-EB3 5611952 YP_001475275.1 CDS Ssed_3543 NC_009831.1 4318588 4319319 R KEGG: slo:Shew_2983 Tat (twin-arginine translocation) pathway signal sequence domain protein; hypothetical protein complement(4318588..4319319) Shewanella sediminis HAW-EB3 5611953 YP_001475276.1 CDS Ssed_3544 NC_009831.1 4319313 4319912 R KEGG: btk:BT9727_1356 thiol-disulfide oxidoreductase; hypothetical protein complement(4319313..4319912) Shewanella sediminis HAW-EB3 5611926 YP_001475277.1 CDS Ssed_3545 NC_009831.1 4320143 4321531 D KEGG: bba:Bd0322 D-amino acid dehydrogenase; D-amino acid dehydrogenase 4320143..4321531 Shewanella sediminis HAW-EB3 5611927 YP_001475278.1 CDS Ssed_3546 NC_009831.1 4321616 4321942 D hypothetical protein 4321616..4321942 Shewanella sediminis HAW-EB3 5611928 YP_001475279.1 CDS Ssed_3547 NC_009831.1 4322013 4322354 D KEGG: mxa:MXAN_5993 hypothetical protein; hypothetical protein 4322013..4322354 Shewanella sediminis HAW-EB3 5611929 YP_001475280.1 CDS Ssed_3548 NC_009831.1 4322689 4323237 R KEGG: shw:Sputw3181_3956 redoxin domain protein; redoxin domain-containing protein complement(4322689..4323237) Shewanella sediminis HAW-EB3 5611851 YP_001475281.1 CDS Ssed_3549 NC_009831.1 4323264 4324082 R KEGG: spc:Sputcn32_0115 DsbA oxidoreductase; DsbA oxidoreductase complement(4323264..4324082) Shewanella sediminis HAW-EB3 5611852 YP_001475282.1 CDS Ssed_3550 NC_009831.1 4324196 4326328 R KEGG: shw:Sputw3181_3958 suppressor for copper-sensitivity B precursor; suppressor for copper-sensitivity B complement(4324196..4326328) Shewanella sediminis HAW-EB3 5611853 YP_001475283.1 CDS Ssed_3551 NC_009831.1 4326500 4326976 R KEGG: spc:Sputcn32_0113 hypothetical protein; hypothetical protein complement(4326500..4326976) Shewanella sediminis HAW-EB3 5611854 YP_001475284.1 CDS Ssed_3552 NC_009831.1 4327370 4328920 D KEGG: slo:Shew_2984 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 4327370..4328920 Shewanella sediminis HAW-EB3 5611730 YP_001475285.1 CDS Ssed_3553 NC_009831.1 4329424 4331442 D KEGG: saz:Sama_2967 conserved hypothetical protein; hypothetical protein 4329424..4331442 Shewanella sediminis HAW-EB3 5611731 YP_001475286.1 CDS Ssed_3554 NC_009831.1 4331445 4332599 D KEGG: saz:Sama_2968 hypothetical protein; hypothetical protein 4331445..4332599 Shewanella sediminis HAW-EB3 5611732 YP_001475287.1 CDS Ssed_3555 NC_009831.1 4332806 4335115 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(4332806..4335115) Shewanella sediminis HAW-EB3 5611823 YP_001475288.1 CDS Ssed_3556 NC_009831.1 4335329 4336234 D KEGG: shn:Shewana3_3470 transcriptional regulator, LysR family; LysR family transcriptional regulator 4335329..4336234 Shewanella sediminis HAW-EB3 5611824 YP_001475289.1 CDS Ssed_3557 NC_009831.1 4336366 4337094 R KEGG: slo:Shew_2988 signal transduction protein; signal transduction protein complement(4336366..4337094) Shewanella sediminis HAW-EB3 5611825 YP_001475290.1 CDS Ssed_3558 NC_009831.1 4337482 4338087 R KEGG: saz:Sama_2630 lipolytic enzyme, G-D-S-L; lipolytic protein G-D-S-L complement(4337482..4338087) Shewanella sediminis HAW-EB3 5611826 YP_001475291.1 CDS Ssed_3559 NC_009831.1 4338313 4340310 R KEGG: sbl:Sbal_0663 TonB-dependent receptor; TonB-dependent receptor complement(4338313..4340310) Shewanella sediminis HAW-EB3 5611716 YP_001475292.1 CDS Ssed_3560 NC_009831.1 4340803 4341591 R KEGG: shm:Shewmr7_0650 hypothetical protein; hypothetical protein complement(4340803..4341591) Shewanella sediminis HAW-EB3 5611717 YP_001475293.1 CDS Ssed_3561 NC_009831.1 4341816 4342766 R KEGG: slo:Shew_3158 polysulphide reductase, NrfD; polysulfide reductase NrfD complement(4341816..4342766) Shewanella sediminis HAW-EB3 5611718 YP_001475294.1 CDS Ssed_3562 NC_009831.1 4342763 4343458 R KEGG: slo:Shew_3157 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(4342763..4343458) Shewanella sediminis HAW-EB3 5611719 YP_001475295.1 CDS Ssed_3563 NC_009831.1 4343473 4343973 R KEGG: sfr:Sfri_0615 hypothetical protein; hypothetical protein complement(4343473..4343973) Shewanella sediminis HAW-EB3 5611552 YP_001475296.1 CDS Ssed_3564 NC_009831.1 4344057 4344560 R KEGG: slo:Shew_3155 hypothetical protein; hypothetical protein complement(4344057..4344560) Shewanella sediminis HAW-EB3 5611553 YP_001475297.1 CDS Ssed_3565 NC_009831.1 4344938 4345918 D KEGG: slo:Shew_3154 transcriptional regulator, LysR family; LysR family transcriptional regulator 4344938..4345918 Shewanella sediminis HAW-EB3 5611554 YP_001475298.1 CDS Ssed_3566 NC_009831.1 4345961 4346959 R KEGG: slo:Shew_3153 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4345961..4346959) Shewanella sediminis HAW-EB3 5611555 YP_001475299.1 CDS Ssed_3567 NC_009831.1 4347419 4348963 D KEGG: slo:Shew_2996 hypothetical protein; hypothetical protein 4347419..4348963 Shewanella sediminis HAW-EB3 5613381 YP_001475300.1 CDS Ssed_3568 NC_009831.1 4348982 4349569 D KEGG: slo:Shew_2997 acetyltransferase-like protein; acetyltransferase-like protein 4348982..4349569 Shewanella sediminis HAW-EB3 5613382 YP_001475301.1 CDS Ssed_3569 NC_009831.1 4349678 4350499 D KEGG: slo:Shew_2998 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 4349678..4350499 Shewanella sediminis HAW-EB3 5613383 YP_001475302.1 CDS Ssed_3570 NC_009831.1 4350711 4351019 D KEGG: slo:Shew_2999 hypothetical protein; hypothetical protein 4350711..4351019 Shewanella sediminis HAW-EB3 5613384 YP_001475303.1 CDS Ssed_3571 NC_009831.1 4351012 4352844 D KEGG: slo:Shew_3000 diguanylate cyclase; diguanylate cyclase 4351012..4352844 Shewanella sediminis HAW-EB3 5611614 YP_001475304.1 CDS Ssed_3572 NC_009831.1 4352947 4353465 D hypothetical protein 4352947..4353465 Shewanella sediminis HAW-EB3 5611615 YP_001475305.1 CDS Ssed_3573 NC_009831.1 4353810 4356272 D KEGG: pin:Ping_1040 chaperone endopeptidase Clp ATP-binding chain B,ClpB; chaperone endopeptidase Clp ATP-binding chain B,ClpB 4353810..4356272 Shewanella sediminis HAW-EB3 5611616 YP_001475306.1 CDS Ssed_3574 NC_009831.1 4356375 4356908 R KEGG: vfi:VFA1108 hypothetical protein; hypothetical protein complement(4356375..4356908) Shewanella sediminis HAW-EB3 5611617 YP_001475307.1 CDS Ssed_3575 NC_009831.1 4357052 4358293 R KEGG: bpd:BURPS668_3008 drug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter complement(4357052..4358293) Shewanella sediminis HAW-EB3 5613573 YP_001475308.1 CDS Ssed_3576 NC_009831.1 4358395 4359324 D KEGG: cps:CPS_1244 transcriptional regulator, LysR family; carbonate dehydratase 4358395..4359324 Shewanella sediminis HAW-EB3 5613574 YP_001475309.1 CDS Ssed_3577 NC_009831.1 4359824 4361041 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(4359824..4361041) Shewanella sediminis HAW-EB3 5613575 YP_001475310.1 CDS Ssed_3578 NC_009831.1 4361100 4361708 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(4361100..4361708) Shewanella sediminis HAW-EB3 5611106 YP_001475311.1 CDS Ssed_3579 NC_009831.1 4361718 4362341 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(4361718..4362341) Shewanella sediminis HAW-EB3 5611107 YP_001475312.1 CDS Ssed_3580 NC_009831.1 4362343 4363113 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(4362343..4363113) Shewanella sediminis HAW-EB3 5611108 YP_001475313.1 CDS Ssed_3581 NC_009831.1 4363103 4364317 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(4363103..4364317) Shewanella sediminis HAW-EB3 5611109 YP_001475314.1 CDS Ssed_3582 NC_009831.1 4364406 4365767 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(4364406..4365767) Shewanella sediminis HAW-EB3 5614009 YP_001475315.1 CDS Ssed_3583 NC_009831.1 4366328 4368544 D KEGG: slo:Shew_3001 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4366328..4368544 Shewanella sediminis HAW-EB3 5614010 YP_001475316.1 CDS Ssed_3584 NC_009831.1 4368916 4369881 R KEGG: pin:Ping_1300 ABC sugar transporter inner membrane translocator; ABC sugar transporter inner membrane translocator complement(4368916..4369881) Shewanella sediminis HAW-EB3 5614011 YP_001475317.1 CDS Ssed_3585 NC_009831.1 4369885 4371015 R KEGG: pin:Ping_1299 ABC transporter inner-membrane translocator; ABC transporter inner-membrane translocator complement(4369885..4371015) Shewanella sediminis HAW-EB3 5614012 YP_001475318.1 CDS Ssed_3586 NC_009831.1 4371012 4372601 R KEGG: pin:Ping_1298 ABC transporter ATP-binding protein; ABC transporter ATP-binding protein complement(4371012..4372601) Shewanella sediminis HAW-EB3 5613521 YP_001475319.1 CDS Ssed_3587 NC_009831.1 4372729 4373733 R KEGG: pin:Ping_1297 basic membrane lipoprotein; basic membrane lipoprotein complement(4372729..4373733) Shewanella sediminis HAW-EB3 5613522 YP_001475320.1 CDS Ssed_3588 NC_009831.1 4374670 4376907 R KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c complement(4374670..4376907) Shewanella sediminis HAW-EB3 5613523 YP_001475321.1 CDS Ssed_3589 NC_009831.1 4377318 4378274 D KEGG: son:SO4571 transcriptional regulator, LysR family; transcriptional regulator-like protein 4377318..4378274 Shewanella sediminis HAW-EB3 5613524 YP_001475322.1 CDS Ssed_3590 NC_009831.1 4378291 4379241 D KEGG: shw:Sputw3181_3897 transcriptional regulator, LysR family; transcriptional regulator-like protein 4378291..4379241 Shewanella sediminis HAW-EB3 5613847 YP_001475323.1 CDS Ssed_3591 NC_009831.1 4379357 4379584 R KEGG: slo:Shew_2961 hypothetical protein; hypothetical protein complement(4379357..4379584) Shewanella sediminis HAW-EB3 5613848 YP_001475324.1 CDS Ssed_3592 NC_009831.1 4379862 4380401 D KEGG: vfi:VFA0032 thioredoxin peroxidase; thioredoxin peroxidase 4379862..4380401 Shewanella sediminis HAW-EB3 5613849 YP_001475325.1 CDS Ssed_3593 NC_009831.1 4380467 4381267 R KEGG: slo:Shew_3002 hypothetical protein; hypothetical protein complement(4380467..4381267) Shewanella sediminis HAW-EB3 5613850 YP_001475326.1 CDS Ssed_3594 NC_009831.1 4381451 4382275 R KEGG: hch:HCH_04060 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein complement(4381451..4382275) Shewanella sediminis HAW-EB3 5613426 YP_001475327.1 CDS Ssed_3595 NC_009831.1 4382745 4383779 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 4382745..4383779 Shewanella sediminis HAW-EB3 5613427 YP_001475328.1 CDS Ssed_3596 NC_009831.1 4383882 4385003 R KEGG: ppr:PBPRB1509 membrane protein; hypothetical protein complement(4383882..4385003) Shewanella sediminis HAW-EB3 5613428 YP_001475329.1 CDS Ssed_3597 NC_009831.1 4385228 4386658 D KEGG: shw:Sputw3181_2944 glutathione synthase; glutathione synthase 4385228..4386658 Shewanella sediminis HAW-EB3 5613429 YP_001475330.1 CDS Ssed_3598 NC_009831.1 4386752 4387060 R KEGG: vfi:VFA0176 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(4386752..4387060) Shewanella sediminis HAW-EB3 5610990 YP_001475331.1 CDS Ssed_3599 NC_009831.1 4387239 4388621 D KEGG: cps:CPS_2704 hypothetical protein; hypothetical protein 4387239..4388621 Shewanella sediminis HAW-EB3 5610991 YP_001475332.1 CDS Ssed_3600 NC_009831.1 4388722 4389000 D KEGG: slo:Shew_3008 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4388722..4389000 Shewanella sediminis HAW-EB3 5610992 YP_001475333.1 CDS Ssed_3601 NC_009831.1 4389206 4389451 R hypothetical protein complement(4389206..4389451) Shewanella sediminis HAW-EB3 5613913 YP_001475334.1 CDS Ssed_3602 NC_009831.1 4389934 4390323 D KEGG: gme:Gmet_2649 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4389934..4390323 Shewanella sediminis HAW-EB3 5613914 YP_001475335.1 CDS Ssed_3603 NC_009831.1 4390688 4391614 D KEGG: ppr:PBPRA1646 conserved hypothetical protein; hypothetical protein 4390688..4391614 Shewanella sediminis HAW-EB3 5613915 YP_001475336.1 CDS Ssed_3604 NC_009831.1 4391758 4393158 D KEGG: vpa:VP0618 hypothetical protein; hypothetical protein 4391758..4393158 Shewanella sediminis HAW-EB3 5613916 YP_001475337.1 CDS Ssed_3605 NC_009831.1 4393268 4394143 D KEGG: ppr:PBPRB0725 hypothetical protein; hypothetical protein 4393268..4394143 Shewanella sediminis HAW-EB3 5610124 YP_001475338.1 CDS Ssed_3606 NC_009831.1 4394225 4395091 D KEGG: ppr:PBPRB0729 hypothetical protein; hypothetical protein 4394225..4395091 Shewanella sediminis HAW-EB3 5610125 YP_001475339.1 CDS Ssed_3607 NC_009831.1 4395185 4395649 R KEGG: sbl:Sbal_3797 hypothetical protein; hypothetical protein complement(4395185..4395649) Shewanella sediminis HAW-EB3 5610126 YP_001475340.1 CDS Ssed_3608 NC_009831.1 4395820 4396842 R KEGG: sfr:Sfri_2277 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(4395820..4396842) Shewanella sediminis HAW-EB3 5610127 YP_001475341.1 CDS Ssed_3609 NC_009831.1 4396846 4397148 R KEGG: ppr:PBPRA1400 hypothetical protein; hypothetical protein complement(4396846..4397148) Shewanella sediminis HAW-EB3 5611571 YP_001475342.1 CDS Ssed_3610 NC_009831.1 4397250 4398149 D KEGG: ppr:PBPRA1401 hypothetical transcriptional regulator, LysR family; hypothetical protein 4397250..4398149 Shewanella sediminis HAW-EB3 5611572 YP_001475343.1 CDS miaA NC_009831.1 4398178 4399083 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4398178..4399083) Shewanella sediminis HAW-EB3 5611573 YP_001475344.1 CDS Ssed_3612 NC_009831.1 4399291 4400001 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(4399291..4400001) Shewanella sediminis HAW-EB3 5611574 YP_001475345.1 CDS Ssed_3613 NC_009831.1 4400419 4401018 R KEGG: cps:CPS_2520 short chain dehydrogenase; short chain dehydrogenase complement(4400419..4401018) Shewanella sediminis HAW-EB3 5611755 YP_001475346.1 CDS Ssed_3614 NC_009831.1 4401142 4402023 D KEGG: cps:CPS_2521 transcriptional regulator, LysR family; LysR family transcriptional regulator 4401142..4402023 Shewanella sediminis HAW-EB3 5611756 YP_001475347.1 CDS Ssed_3615 NC_009831.1 4402088 4403038 R KEGG: cps:CPS_3320 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4402088..4403038) Shewanella sediminis HAW-EB3 5611757 YP_001475348.1 CDS Ssed_3616 NC_009831.1 4403196 4404008 D KEGG: cps:CPS_3319 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase family protein 4403196..4404008 Shewanella sediminis HAW-EB3 5611758 YP_001475349.1 CDS Ssed_3617 NC_009831.1 4404054 4404935 D KEGG: swo:Swol_0919 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase 4404054..4404935 Shewanella sediminis HAW-EB3 5611827 YP_001475350.1 CDS Ssed_3618 NC_009831.1 4405091 4406179 R KEGG: swo:Swol_1378 hypothetical protein; hypothetical protein complement(4405091..4406179) Shewanella sediminis HAW-EB3 5611828 YP_001475351.1 CDS Ssed_3619 NC_009831.1 4406605 4407138 D KEGG: cps:CPS_1243 FMN reductase, NADPH-dependent; FMN reductase, NADPH-dependent 4406605..4407138 Shewanella sediminis HAW-EB3 5611829 YP_001475352.1 CDS Ssed_3620 NC_009831.1 4407354 4408976 D KEGG: dar:Daro_3357 GAF; GAF containing protein 4407354..4408976 Shewanella sediminis HAW-EB3 5611830 YP_001475353.1 CDS Ssed_3621 NC_009831.1 4408986 4410809 D KEGG: hha:Hhal_1889 adenylate/guanylate cyclase; guanylate cyclase 4408986..4410809 Shewanella sediminis HAW-EB3 5612320 YP_001475354.1 CDS Ssed_3622 NC_009831.1 4410806 4411369 D hypothetical protein 4410806..4411369 Shewanella sediminis HAW-EB3 5612321 YP_001475355.1 CDS Ssed_3623 NC_009831.1 4411366 4412250 D KEGG: tbd:Tbd_0982 Zn-dependent protease containing TPR repeats; TPR repeat-containing Zn-dependent protease 4411366..4412250 Shewanella sediminis HAW-EB3 5612322 YP_001475356.1 CDS Ssed_3624 NC_009831.1 4412293 4413318 R KEGG: slo:Shew_0794 diguanylate cyclase; diguanylate cyclase complement(4412293..4413318) Shewanella sediminis HAW-EB3 5612225 YP_001475357.1 CDS Ssed_3625 NC_009831.1 4413591 4414166 R KEGG: cps:CPS_0318 hypothetical protein; hypothetical protein complement(4413591..4414166) Shewanella sediminis HAW-EB3 5612226 YP_001475358.1 CDS Ssed_3626 NC_009831.1 4414495 4416225 R KEGG: abo:ABO_1526 hypothetical protein; hypothetical protein complement(4414495..4416225) Shewanella sediminis HAW-EB3 5612227 YP_001475359.1 CDS Ssed_3627 NC_009831.1 4416781 4417683 D KEGG: vvu:VV2_0787 DNA gyrase inhibitor; DNA gyrase inhibitor 4416781..4417683 Shewanella sediminis HAW-EB3 5612228 YP_001475360.1 CDS Ssed_3628 NC_009831.1 4418105 4418350 D KEGG: ppr:PBPRB0452 hypothetical protein; hypothetical protein 4418105..4418350 Shewanella sediminis HAW-EB3 5612403 YP_001475361.1 CDS Ssed_3629 NC_009831.1 4418556 4419452 D KEGG: slo:Shew_0978 band 7 protein; hypothetical protein 4418556..4419452 Shewanella sediminis HAW-EB3 5612404 YP_001475362.1 CDS Ssed_3630 NC_009831.1 4419580 4420134 R KEGG: shm:Shewmr7_3765 OmpA domain protein transmembrane region-containing protein; OmpA domain-containing protein complement(4419580..4420134) Shewanella sediminis HAW-EB3 5612405 YP_001475363.1 CDS Ssed_3631 NC_009831.1 4420518 4422278 D KEGG: lmf:LMOf2365_0347 cell wall surface anchor family protein; hypothetical protein 4420518..4422278 Shewanella sediminis HAW-EB3 5612406 YP_001475364.1 CDS Ssed_3632 NC_009831.1 4422458 4422775 D KEGG: slo:Shew_3027 hypothetical protein; hypothetical protein 4422458..4422775 Shewanella sediminis HAW-EB3 5612094 YP_001475365.1 CDS Ssed_3633 NC_009831.1 4422878 4424947 D KEGG: sfr:Sfri_1958 endothelin-converting enzyme 1; endothelin-converting protein 1 4422878..4424947 Shewanella sediminis HAW-EB3 5612095 YP_001475366.1 CDS Ssed_3634 NC_009831.1 4425102 4426388 R KEGG: vvy:VV2444 long-chain fatty acid transport protein; long-chain fatty acid transport protein complement(4425102..4426388) Shewanella sediminis HAW-EB3 5612096 YP_001475367.1 CDS Ssed_3635 NC_009831.1 4426784 4427032 R KEGG: slo:Shew_3030 hypothetical protein; hypothetical protein complement(4426784..4427032) Shewanella sediminis HAW-EB3 5612097 YP_001475368.1 CDS Ssed_3636 NC_009831.1 4427180 4429477 R KEGG: nha:Nham_3287 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(4427180..4429477) Shewanella sediminis HAW-EB3 5612646 YP_001475369.1 CDS Ssed_3637 NC_009831.1 4429845 4431263 D KEGG: vei:Veis_4069 peptidase S1 and S6, chymotrypsin/Hap; hypothetical protein 4429845..4431263 Shewanella sediminis HAW-EB3 5612647 YP_001475370.1 CDS Ssed_3638 NC_009831.1 4431615 4433834 D KEGG: son:SO0719 TonB-dependent receptor; TonB-dependent receptor 4431615..4433834 Shewanella sediminis HAW-EB3 5612648 YP_001475371.1 CDS Ssed_3639 NC_009831.1 4434162 4435448 R KEGG: spc:Sputcn32_2888 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(4434162..4435448) Shewanella sediminis HAW-EB3 5612649 YP_001475372.1 CDS Ssed_3640 NC_009831.1 4435448 4436359 R KEGG: spc:Sputcn32_2889 hypothetical protein; hypothetical protein complement(4435448..4436359) Shewanella sediminis HAW-EB3 5612743 YP_001475373.1 CDS Ssed_3641 NC_009831.1 4436362 4437015 R KEGG: spc:Sputcn32_2890 metallophosphoesterase; metallophosphoesterase complement(4436362..4437015) Shewanella sediminis HAW-EB3 5612744 YP_001475374.1 CDS Ssed_3642 NC_009831.1 4437392 4438018 D KEGG: ppr:PBPRB0191 hypothetical protein; hypothetical protein 4437392..4438018 Shewanella sediminis HAW-EB3 5612745 YP_001475375.1 CDS Ssed_3643 NC_009831.1 4438099 4438680 R KEGG: she:Shewmr4_1157 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4438099..4438680) Shewanella sediminis HAW-EB3 5612746 YP_001475376.1 CDS Ssed_3644 NC_009831.1 4438822 4439874 D KEGG: ppr:PBPRB1366 NADH-dependent flavin oxidoreductase; NADH-dependent flavin oxidoreductase 4438822..4439874 Shewanella sediminis HAW-EB3 5612765 YP_001475377.1 CDS Ssed_3645 NC_009831.1 4440035 4441381 R KEGG: cps:CPS_1338 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase complement(4440035..4441381) Shewanella sediminis HAW-EB3 5612766 YP_001475378.1 CDS Ssed_3646 NC_009831.1 4441836 4443080 R KEGG: mag:amb3711 hypothetical protein; hypothetical protein complement(4441836..4443080) Shewanella sediminis HAW-EB3 5612767 YP_001475379.1 CDS Ssed_3647 NC_009831.1 4443521 4445563 D KEGG: cps:CPS_0147 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 4443521..4445563 Shewanella sediminis HAW-EB3 5612923 YP_001475380.1 CDS Ssed_3648 NC_009831.1 4445692 4446123 R KEGG: sbl:Sbal_0639 hypothetical protein; hypothetical protein complement(4445692..4446123) Shewanella sediminis HAW-EB3 5612924 YP_001475381.1 CDS Ssed_3649 NC_009831.1 4446255 4447106 R KEGG: sdn:Sden_0674 hypothetical protein; hypothetical protein complement(4446255..4447106) Shewanella sediminis HAW-EB3 5612925 YP_001475382.1 CDS Ssed_3650 NC_009831.1 4447919 4449370 D KEGG: vvu:VV2_0918 hypothetical protein; hypothetical protein 4447919..4449370 Shewanella sediminis HAW-EB3 5612926 YP_001475383.1 CDS Ssed_3651 NC_009831.1 4449442 4449681 R KEGG: sbl:Sbal_0642 hypothetical protein; hypothetical protein complement(4449442..4449681) Shewanella sediminis HAW-EB3 5612787 YP_001475384.1 CDS Ssed_3652 NC_009831.1 4449924 4450997 R KEGG: shn:Shewana3_1536 hypothetical protein; hypothetical protein complement(4449924..4450997) Shewanella sediminis HAW-EB3 5612788 YP_001475385.1 CDS Ssed_3653 NC_009831.1 4451668 4453221 R KEGG: shn:Shewana3_0658 cytochrome c552; nitrite reductase complement(4451668..4453221) Shewanella sediminis HAW-EB3 5612789 YP_001475386.1 CDS Ssed_3654 NC_009831.1 4454310 4455041 D KEGG: vvy:VVA0211 uridine phosphorylase; uridine phosphorylase 4454310..4455041 Shewanella sediminis HAW-EB3 5612790 YP_001475387.1 CDS Ssed_3655 NC_009831.1 4455239 4455487 R KEGG: shw:Sputw3181_0739 hypothetical protein; hypothetical protein complement(4455239..4455487) Shewanella sediminis HAW-EB3 5612919 YP_001475388.1 CDS Ssed_3656 NC_009831.1 4455768 4456874 R KEGG: vfi:VFA0004 tripeptidase T; tripeptidase T complement(4455768..4456874) Shewanella sediminis HAW-EB3 5612920 YP_001475389.1 CDS Ssed_3657 NC_009831.1 4457154 4457591 D KEGG: slo:Shew_3055 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 4457154..4457591 Shewanella sediminis HAW-EB3 5612921 YP_001475390.1 CDS Ssed_3658 NC_009831.1 4458251 4461403 D KEGG: mac:MA3492 hypothetical protein; nucleoside phosphorylase-like protein 4458251..4461403 Shewanella sediminis HAW-EB3 5612922 YP_001475391.1 CDS Ssed_3659 NC_009831.1 4461513 4462556 D KEGG: shn:Shewana3_3200 protein of unknown function DUF1568; hypothetical protein 4461513..4462556 Shewanella sediminis HAW-EB3 5612983 YP_001475392.1 CDS Ssed_3660 NC_009831.1 4463816 4464220 D hypothetical protein 4463816..4464220 Shewanella sediminis HAW-EB3 5612984 YP_001475393.1 CDS Ssed_3661 NC_009831.1 4464360 4464839 D KEGG: sfr:Sfri_2281 cation antiporter; cation antiporter 4464360..4464839 Shewanella sediminis HAW-EB3 5612985 YP_001475394.1 CDS Ssed_3662 NC_009831.1 4464869 4465129 D KEGG: hne:HNE_0730 monovalent cation/proton antiporter, MnhF/PhaF family; MnhF/PhaF family monovalent cation/proton antiporter 4464869..4465129 Shewanella sediminis HAW-EB3 5612986 YP_001475395.1 CDS Ssed_3663 NC_009831.1 4465126 4465467 D KEGG: hne:HNE_0731 monovalent cation/proton antiporter, MnhG/PhaG family; multisubunit Na+/H+ antiporter MnhG subunit-like protein 4465126..4465467 Shewanella sediminis HAW-EB3 5613291 YP_001475396.1 CDS Ssed_3664 NC_009831.1 4465515 4466519 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 4465515..4466519 Shewanella sediminis HAW-EB3 5613292 YP_001475397.1 CDS Ssed_3665 NC_009831.1 4466519 4466887 D KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 4466519..4466887 Shewanella sediminis HAW-EB3 5613293 YP_001475398.1 CDS Ssed_3666 NC_009831.1 4466881 4468359 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 4466881..4468359 Shewanella sediminis HAW-EB3 5613294 YP_001475399.1 CDS Ssed_3667 NC_009831.1 4468356 4469846 D KEGG: rba:RB1430 NADH-ubiquinone oxidoreductase subunit; NADH dehydrogenase (quinone) 4468356..4469846 Shewanella sediminis HAW-EB3 5613791 YP_001475400.1 CDS Ssed_3668 NC_009831.1 4469836 4470222 D hypothetical protein 4469836..4470222 Shewanella sediminis HAW-EB3 5613792 YP_001475401.1 CDS Ssed_3669 NC_009831.1 4470209 4471909 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit D 4470209..4471909 Shewanella sediminis HAW-EB3 5613793 YP_001475402.1 CDS Ssed_3670 NC_009831.1 4472036 4472722 D KEGG: hch:HCH_01378 transposase and inactivated derivatives; transposase and inactivated derivatives 4472036..4472722 Shewanella sediminis HAW-EB3 5613650 YP_001475403.1 CDS Ssed_3671 NC_009831.1 4473114 4474556 D KEGG: azo:azo2326 conserved hypothetical signaling protein; signaling protein 4473114..4474556 Shewanella sediminis HAW-EB3 5613651 YP_001475404.1 CDS Ssed_3672 NC_009831.1 4474754 4475188 R KEGG: slo:Shew_3059 hypothetical protein; hypothetical protein complement(4474754..4475188) Shewanella sediminis HAW-EB3 5613652 YP_001475405.1 CDS Ssed_3673 NC_009831.1 4476116 4479004 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(4476116..4479004) Shewanella sediminis HAW-EB3 5613653 YP_001475406.1 CDS Ssed_3674 NC_009831.1 4479158 4479547 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(4479158..4479547) Shewanella sediminis HAW-EB3 5613831 YP_001475407.1 CDS gcvT NC_009831.1 4479956 4481050 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(4479956..4481050) Shewanella sediminis HAW-EB3 5613832 YP_001475408.1 CDS Ssed_3676 NC_009831.1 4481364 4482578 R KEGG: slo:Shew_3065 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(4481364..4482578) Shewanella sediminis HAW-EB3 5613833 YP_001475409.1 CDS Ssed_3677 NC_009831.1 4482635 4483882 R KEGG: slo:Shew_3066 2-polyprenyl-6-methoxyphenol 4-hydroxylase; 2-polyprenyl-6-methoxyphenol 4-hydroxylase complement(4482635..4483882) Shewanella sediminis HAW-EB3 5613834 YP_001475410.1 CDS Ssed_3678 NC_009831.1 4484018 4484584 R KEGG: slo:Shew_3067 YecA family protein; hypothetical protein complement(4484018..4484584) Shewanella sediminis HAW-EB3 5613489 YP_001475411.1 CDS Ssed_3679 NC_009831.1 4485166 4485474 D KEGG: slo:Shew_3068 protein of unknown function DUF710; hypothetical protein 4485166..4485474 Shewanella sediminis HAW-EB3 5613490 YP_001475412.1 CDS Ssed_3680 NC_009831.1 4485951 4486199 R KEGG: sdn:Sden_0464 hypothetical protein; hypothetical protein complement(4485951..4486199) Shewanella sediminis HAW-EB3 5613491 YP_001475413.1 CDS Ssed_3681 NC_009831.1 4486199 4486393 R KEGG: ban:BA1483 purine nucleoside phosphorylase; purine nucleoside phosphorylase complement(4486199..4486393) Shewanella sediminis HAW-EB3 5613492 YP_001475414.1 CDS Ssed_3682 NC_009831.1 4486493 4486909 R KEGG: vco:VC0395_0083 purine nucleoside phosphorylase; purine nucleoside phosphorylase complement(4486493..4486909) Shewanella sediminis HAW-EB3 5613965 YP_001475415.1 CDS Ssed_3683 NC_009831.1 4487017 4487679 D KEGG: son:SO4298 cyclic nucleotide binding protein; cyclic nucleotide binding protein 4487017..4487679 Shewanella sediminis HAW-EB3 5613966 YP_001475416.1 CDS Ssed_3684 NC_009831.1 4487787 4488179 R hypothetical protein complement(4487787..4488179) Shewanella sediminis HAW-EB3 5613967 YP_001475417.1 CDS Ssed_3685 NC_009831.1 4488420 4489160 D KEGG: hch:HCH_03036 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase-like protein 4488420..4489160 Shewanella sediminis HAW-EB3 5613968 YP_001475418.1 CDS Ssed_3686 NC_009831.1 4489190 4489915 D KEGG: slo:Shew_3069 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 4489190..4489915 Shewanella sediminis HAW-EB3 5614179 YP_001475419.1 CDS Ssed_3687 NC_009831.1 4489964 4490482 D KEGG: shn:Shewana3_1389 lipoprotein; lipoprotein 4489964..4490482 Shewanella sediminis HAW-EB3 5614180 YP_001475420.1 CDS Ssed_3688 NC_009831.1 4490466 4491134 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(4490466..4491134) Shewanella sediminis HAW-EB3 5614181 YP_001475421.1 CDS Ssed_3689 NC_009831.1 4491369 4491929 D KEGG: slo:Shew_3074 pilin; pilin 4491369..4491929 Shewanella sediminis HAW-EB3 5614182 YP_001475422.1 CDS Ssed_3690 NC_009831.1 4492008 4492565 D KEGG: sfr:Sfri_3092 methylation site containing protein; methylation site containing protein 4492008..4492565 Shewanella sediminis HAW-EB3 5613990 YP_001475423.1 CDS Ssed_3691 NC_009831.1 4493018 4493317 D KEGG: slo:Shew_3075 hypothetical protein; hypothetical protein 4493018..4493317 Shewanella sediminis HAW-EB3 5613991 YP_001475424.1 CDS Ssed_3692 NC_009831.1 4493653 4494309 R KEGG: she:Shewmr4_0890 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) complement(4493653..4494309) Shewanella sediminis HAW-EB3 5613992 YP_001475425.1 CDS Ssed_3693 NC_009831.1 4494482 4495942 D KEGG: shm:Shewmr7_3135 transcriptional regulator, fis family; Fis family transcriptional regulator 4494482..4495942 Shewanella sediminis HAW-EB3 5614084 YP_001475426.1 CDS Ssed_3694 NC_009831.1 4496154 4497599 D KEGG: shn:Shewana3_3228 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4496154..4497599 Shewanella sediminis HAW-EB3 5614085 YP_001475427.1 CDS Ssed_3695 NC_009831.1 4498134 4499738 D KEGG: shm:Shewmr7_3139 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 4498134..4499738 Shewanella sediminis HAW-EB3 5614086 YP_001475428.1 CDS Ssed_3696 NC_009831.1 4499913 4500944 R KEGG: rpe:RPE_4616 alpha/beta hydrolase; alpha/beta hydrolase complement(4499913..4500944) Shewanella sediminis HAW-EB3 5614087 YP_001475429.1 CDS Ssed_3697 NC_009831.1 4500970 4501419 R hypothetical protein complement(4500970..4501419) Shewanella sediminis HAW-EB3 5613584 YP_001475430.1 CDS Ssed_3698 NC_009831.1 4501527 4503440 R KEGG: slo:Shew_3087 lipid A ABC exporter family, fused ATPase and inner membrane subunits; lipid ABC transporter ATPase/inner membrane protein complement(4501527..4503440) Shewanella sediminis HAW-EB3 5613585 YP_001475431.1 CDS Ssed_3699 NC_009831.1 4503622 4503948 D KEGG: slo:Shew_3089 hypothetical protein; hypothetical protein 4503622..4503948 Shewanella sediminis HAW-EB3 5613586 YP_001475432.1 CDS Ssed_3700 NC_009831.1 4504052 4504927 R KEGG: pha:PSHAb0529 cation transporter component; cation transporter component complement(4504052..4504927) Shewanella sediminis HAW-EB3 5613587 YP_001475433.1 CDS Ssed_3701 NC_009831.1 4505557 4505847 R KEGG: shw:Sputw3181_0969 hypothetical protein; hypothetical protein complement(4505557..4505847) Shewanella sediminis HAW-EB3 5610139 YP_001475434.1 CDS Ssed_3702 NC_009831.1 4506028 4506714 D KEGG: slo:Shew_3091 membrane-flanked domain protein; membrane-flanked domain-containing protein 4506028..4506714 Shewanella sediminis HAW-EB3 5610140 YP_001475435.1 CDS Ssed_3703 NC_009831.1 4506716 4508257 D KEGG: slo:Shew_3092 membrane-flanked domain protein; membrane-flanked domain-containing protein 4506716..4508257 Shewanella sediminis HAW-EB3 5610141 YP_001475436.1 CDS Ssed_3704 NC_009831.1 4508413 4509033 D KEGG: slo:Shew_3093 protein of unknown function DUF924; hypothetical protein 4508413..4509033 Shewanella sediminis HAW-EB3 5610142 YP_001475437.1 CDS Ssed_3705 NC_009831.1 4509140 4510765 R KEGG: shn:Shewana3_3173 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4509140..4510765) Shewanella sediminis HAW-EB3 5610856 YP_001475438.1 CDS Ssed_3706 NC_009831.1 4511174 4511605 R KEGG: sfr:Sfri_0938 UspA domain protein; UspA domain-containing protein complement(4511174..4511605) Shewanella sediminis HAW-EB3 5610857 YP_001475439.1 CDS Ssed_3707 NC_009831.1 4511899 4513116 R KEGG: cps:CPS_3594 beta-ketoadipyl CoA thiolase; beta-ketoadipyl CoA thiolase complement(4511899..4513116) Shewanella sediminis HAW-EB3 5610858 YP_001475440.1 CDS Ssed_3708 NC_009831.1 4513118 4514509 R KEGG: cps:CPS_3593 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase complement(4513118..4514509) Shewanella sediminis HAW-EB3 5610859 YP_001475441.1 CDS Ssed_3709 NC_009831.1 4514616 4515326 R KEGG: cps:CPS_3592 3-oxoadipate CoA-transferase, beta subunit; 3-oxoadipate CoA-transferase complement(4514616..4515326) Shewanella sediminis HAW-EB3 5612054 YP_001475442.1 CDS Ssed_3710 NC_009831.1 4515323 4516033 R KEGG: cps:CPS_3591 3-oxoadipate CoA-transferase, alpha subunit; 3-oxoacid CoA-transferase complement(4515323..4516033) Shewanella sediminis HAW-EB3 5612055 YP_001475443.1 CDS Ssed_3711 NC_009831.1 4516053 4517534 R KEGG: cps:CPS_3603 hypothetical protein; hypothetical protein complement(4516053..4517534) Shewanella sediminis HAW-EB3 5612056 YP_001475444.1 CDS Ssed_3712 NC_009831.1 4518181 4519026 D KEGG: hch:HCH_06121 transcriptional regulator; transcriptional regulator 4518181..4519026 Shewanella sediminis HAW-EB3 5612057 YP_001475445.1 CDS Ssed_3713 NC_009831.1 4519294 4519737 R KEGG: slo:Shew_3100 UspA domain protein; UspA domain-containing protein complement(4519294..4519737) Shewanella sediminis HAW-EB3 5613828 YP_001475446.1 CDS Ssed_3714 NC_009831.1 4519829 4520260 R KEGG: son:SO3681 universal stress protein family; universal stress protein complement(4519829..4520260) Shewanella sediminis HAW-EB3 5613829 YP_001475447.1 CDS Ssed_3715 NC_009831.1 4520372 4520749 R KEGG: slo:Shew_3102 hypothetical protein; hypothetical protein complement(4520372..4520749) Shewanella sediminis HAW-EB3 5613830 YP_001475448.1 CDS Ssed_3716 NC_009831.1 4521134 4522564 D KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; coniferyl aldehyde dehydrogenase 4521134..4522564 Shewanella sediminis HAW-EB3 5610264 YP_001475449.1 CDS Ssed_3717 NC_009831.1 4522673 4523248 D KEGG: slo:Shew_3104 transcriptional regulator, TetR family; TetR family transcriptional regulator 4522673..4523248 Shewanella sediminis HAW-EB3 5610265 YP_001475450.1 CDS Ssed_3718 NC_009831.1 4523761 4525131 R KEGG: slo:Shew_0727 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4523761..4525131) Shewanella sediminis HAW-EB3 5610266 YP_001475451.1 CDS Ssed_3719 NC_009831.1 4525150 4526649 R KEGG: slo:Shew_0726 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator complement(4525150..4526649) Shewanella sediminis HAW-EB3 5610267 YP_001475452.1 CDS Ssed_3720 NC_009831.1 4526861 4528072 R KEGG: shm:Shewmr7_3157 protein of unknown function DUF214; hypothetical protein complement(4526861..4528072) Shewanella sediminis HAW-EB3 5610540 YP_001475453.1 CDS Ssed_3721 NC_009831.1 4528091 4529392 R KEGG: shn:Shewana3_3259 protein of unknown function DUF214; hypothetical protein complement(4528091..4529392) Shewanella sediminis HAW-EB3 5610541 YP_001475454.1 CDS Ssed_3722 NC_009831.1 4529404 4530195 R KEGG: shn:Shewana3_3260 ABC transporter related; ABC transporter complement(4529404..4530195) Shewanella sediminis HAW-EB3 5610542 YP_001475455.1 CDS Ssed_3723 NC_009831.1 4530304 4530597 R KEGG: sbl:Sbal_3342 hypothetical protein; hypothetical protein complement(4530304..4530597) Shewanella sediminis HAW-EB3 5610543 YP_001475456.1 CDS Ssed_3724 NC_009831.1 4530608 4531870 R KEGG: slo:Shew_0721 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4530608..4531870) Shewanella sediminis HAW-EB3 5610666 YP_001475457.1 CDS Ssed_3725 NC_009831.1 4532225 4532704 R KEGG: slo:Shew_0731 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(4532225..4532704) Shewanella sediminis HAW-EB3 5610667 YP_001475458.1 CDS Ssed_3726 NC_009831.1 4532750 4533211 R KEGG: slo:Shew_0730 protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(4532750..4533211) Shewanella sediminis HAW-EB3 5610668 YP_001475459.1 CDS Ssed_3727 NC_009831.1 4533345 4534997 R KEGG: aha:AHA_1691 NADH dehydrogenase; NADH dehydrogenase complement(4533345..4534997) Shewanella sediminis HAW-EB3 5610669 YP_001475460.1 CDS Ssed_3728 NC_009831.1 4535308 4535691 R KEGG: shn:Shewana3_3269 hypothetical protein; hypothetical protein complement(4535308..4535691) Shewanella sediminis HAW-EB3 5611544 YP_001475461.1 CDS Ssed_3729 NC_009831.1 4535845 4536729 R KEGG: shn:Shewana3_3272 periplasmic binding protein; periplasmic binding protein complement(4535845..4536729) Shewanella sediminis HAW-EB3 5611545 YP_001475462.1 CDS Ssed_3730 NC_009831.1 4537471 4538085 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(4537471..4538085) Shewanella sediminis HAW-EB3 5610288 YP_001475463.1 CDS Ssed_3731 NC_009831.1 4538146 4539810 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(4538146..4539810) Shewanella sediminis HAW-EB3 5611547 YP_001475464.1 CDS Ssed_3732 NC_009831.1 4539952 4540551 R KEGG: slo:Shew_0716 cobalbumin biosynthesis enzyme; cobalbumin biosynthesis protein complement(4539952..4540551) Shewanella sediminis HAW-EB3 5614183 YP_001475465.1 CDS Ssed_3733 NC_009831.1 4540548 4541321 R KEGG: slo:Shew_0715 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase complement(4540548..4541321) Shewanella sediminis HAW-EB3 5614184 YP_001475466.1 CDS cobT NC_009831.1 4541429 4542457 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(4541429..4542457) Shewanella sediminis HAW-EB3 5614185 YP_001475467.1 CDS Ssed_3735 NC_009831.1 4542688 4543818 R KEGG: sbl:Sbal_3365 transport system permease; transport system permease complement(4542688..4543818) Shewanella sediminis HAW-EB3 5610042 YP_001475468.1 CDS Ssed_3736 NC_009831.1 4543808 4544743 R KEGG: slo:Shew_0712 ABC transporter-related protein; ABC transporter-like protein complement(4543808..4544743) Shewanella sediminis HAW-EB3 5610043 YP_001475469.1 CDS Ssed_3737 NC_009831.1 4545901 4546587 R KEGG: slo:Shew_0711 phosphoglycerate mutase; phosphoglycerate mutase complement(4545901..4546587) Shewanella sediminis HAW-EB3 5610044 YP_001475470.1 CDS Ssed_3738 NC_009831.1 4546732 4549584 R KEGG: sfu:Sfum_0294 multi-sensor signal transduction histidine kinase; Na+/proline symporter-like protein complement(4546732..4549584) Shewanella sediminis HAW-EB3 5610045 YP_001475471.1 CDS metH NC_009831.1 4550071 4553829 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4550071..4553829 Shewanella sediminis HAW-EB3 5611227 YP_001475472.1 CDS Ssed_3740 NC_009831.1 4554863 4555117 D KEGG: sfr:Sfri_1438 hypothetical protein; hypothetical protein 4554863..4555117 Shewanella sediminis HAW-EB3 5611228 YP_001475473.1 CDS Ssed_3741 NC_009831.1 4555305 4556390 R KEGG: gfo:GFO_0080 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(4555305..4556390) Shewanella sediminis HAW-EB3 5611229 YP_001475474.1 CDS Ssed_3742 NC_009831.1 4556551 4557429 R KEGG: ppr:PBPRB1418 hypothetical transcriptional regulator; transcriptional regulator complement(4556551..4557429) Shewanella sediminis HAW-EB3 5611230 YP_001475475.1 CDS Ssed_3743 NC_009831.1 4557512 4557964 D KEGG: ppr:PBPRB1419 hypothetical membrane protein; hypothetical protein 4557512..4557964 Shewanella sediminis HAW-EB3 5609740 YP_001475476.1 CDS Ssed_3744 NC_009831.1 4558047 4559768 R KEGG: slo:Shew_0844 nitrite reductase (cytochrome; ammonia-forming); nitrite reductase complement(4558047..4559768) Shewanella sediminis HAW-EB3 5609741 YP_001475477.1 CDS Ssed_3745 NC_009831.1 4560472 4560717 D KEGG: sdn:Sden_0577 hypothetical protein; hypothetical protein 4560472..4560717 Shewanella sediminis HAW-EB3 5609742 YP_001475478.1 CDS Ssed_3746 NC_009831.1 4561350 4563953 R KEGG: sdn:Sden_2877 protein-P-II uridylyltransferase; (protein-PII) uridylyltransferase complement(4561350..4563953) Shewanella sediminis HAW-EB3 5609743 YP_001475479.1 CDS Ssed_3747 NC_009831.1 4564614 4565819 R hypothetical protein complement(4564614..4565819) Shewanella sediminis HAW-EB3 5612232 YP_001475480.1 CDS Ssed_3748 NC_009831.1 4566540 4567574 R hypothetical protein complement(4566540..4567574) Shewanella sediminis HAW-EB3 5612233 YP_001475481.1 CDS Ssed_3749 NC_009831.1 4567794 4569512 R KEGG: rha:RHA1_ro05345 hypothetical protein; hypothetical protein complement(4567794..4569512) Shewanella sediminis HAW-EB3 5612234 YP_001475482.1 CDS Ssed_3750 NC_009831.1 4569523 4570470 R KEGG: neu:NE1183 serine protease, subtilase family; serine protease complement(4569523..4570470) Shewanella sediminis HAW-EB3 5612235 YP_001475483.1 CDS Ssed_3751 NC_009831.1 4570685 4571113 R KEGG: cth:Cthe_2456 nuclease; nuclease complement(4570685..4571113) Shewanella sediminis HAW-EB3 5610169 YP_001475484.1 CDS Ssed_3752 NC_009831.1 4572054 4572347 D KEGG: ppd:Ppro_2995 TM2 domain containing protein+B7201; TM2 domain-containing protein 4572054..4572347 Shewanella sediminis HAW-EB3 5610170 YP_001475485.1 CDS Ssed_3753 NC_009831.1 4572832 4573485 D KEGG: ppr:PBPRA1656 glutathione S-transferase; glutathione S-transferase 4572832..4573485 Shewanella sediminis HAW-EB3 5610171 YP_001475486.1 CDS Ssed_3754 NC_009831.1 4573569 4575812 R KEGG: pin:Ping_1301 peptidase U32; peptidase U32 complement(4573569..4575812) Shewanella sediminis HAW-EB3 5610172 YP_001475487.1 CDS Ssed_3755 NC_009831.1 4576001 4576249 R hypothetical protein complement(4576001..4576249) Shewanella sediminis HAW-EB3 5609824 YP_001475488.1 CDS Ssed_3756 NC_009831.1 4576624 4577790 D KEGG: shw:Sputw3181_3335 peptidase M19, renal dipeptidase; peptidase M19 4576624..4577790 Shewanella sediminis HAW-EB3 5609825 YP_001475489.1 CDS Ssed_3757 NC_009831.1 4577823 4578500 R KEGG: cps:CPS_4923 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase complement(4577823..4578500) Shewanella sediminis HAW-EB3 5609826 YP_001475490.1 CDS Ssed_3758 NC_009831.1 4578775 4580028 R KEGG: gme:Gmet_0142 hypothetical protein; hypothetical protein complement(4578775..4580028) Shewanella sediminis HAW-EB3 5609827 YP_001475491.1 CDS Ssed_3759 NC_009831.1 4580243 4581907 R KEGG: slo:Shew_0808 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4580243..4581907) Shewanella sediminis HAW-EB3 5612658 YP_001475492.1 CDS Ssed_3760 NC_009831.1 4583252 4583989 D KEGG: shw:Sputw3181_0918 extracellular solute-binding protein, family 3; extracellular solute-binding protein 4583252..4583989 Shewanella sediminis HAW-EB3 5612659 YP_001475493.1 CDS Ssed_3761 NC_009831.1 4583997 4584677 D KEGG: slo:Shew_3165 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 4583997..4584677 Shewanella sediminis HAW-EB3 5612660 YP_001475494.1 CDS Ssed_3762 NC_009831.1 4584670 4585395 D KEGG: slo:Shew_3164 ABC transporter-related protein; ABC transporter-like protein 4584670..4585395 Shewanella sediminis HAW-EB3 5610159 YP_001475495.1 CDS Ssed_3763 NC_009831.1 4585578 4586237 R KEGG: pfa:PF11_0035 hypothetical protein; hypothetical protein complement(4585578..4586237) Shewanella sediminis HAW-EB3 5610160 YP_001475496.1 CDS Ssed_3764 NC_009831.1 4586599 4586964 R KEGG: slo:Shew_0703 response regulator receiver protein; response regulator receiver protein complement(4586599..4586964) Shewanella sediminis HAW-EB3 5610161 YP_001475497.1 CDS Ssed_3765 NC_009831.1 4587335 4587988 D KEGG: pha:PSHAa0324 hypothetical protein; hypothetical protein 4587335..4587988 Shewanella sediminis HAW-EB3 5610162 YP_001475498.1 CDS Ssed_3766 NC_009831.1 4588084 4588338 R hypothetical protein complement(4588084..4588338) Shewanella sediminis HAW-EB3 5610224 YP_001475499.1 CDS Ssed_3767 NC_009831.1 4588364 4591273 R KEGG: pat:Patl_4039 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase alpha subunit (flavoprotein)-like protein complement(4588364..4591273) Shewanella sediminis HAW-EB3 5610225 YP_001475500.1 CDS Ssed_3768 NC_009831.1 4591482 4591766 R hypothetical protein complement(4591482..4591766) Shewanella sediminis HAW-EB3 5610226 YP_001475501.1 CDS Ssed_3769 NC_009831.1 4591769 4593175 R KEGG: dsy:DSY2839 tetrachloroethene dehalogenase; hypothetical protein complement(4591769..4593175) Shewanella sediminis HAW-EB3 5610227 YP_001475502.1 CDS Ssed_3770 NC_009831.1 4593262 4594233 R KEGG: ppr:PBPRB1899 hypothetical protein; hypothetical protein complement(4593262..4594233) Shewanella sediminis HAW-EB3 5610120 YP_001475503.1 CDS Ssed_3771 NC_009831.1 4594648 4595529 D KEGG: slo:Shew_0700 pirin domain protein domain protein; pirin 4594648..4595529 Shewanella sediminis HAW-EB3 5610121 YP_001475504.1 CDS Ssed_3772 NC_009831.1 4595762 4597243 R KEGG: rsp:RSP_2375 hypothetical protein; hypothetical protein complement(4595762..4597243) Shewanella sediminis HAW-EB3 5610122 YP_001475505.1 CDS Ssed_3773 NC_009831.1 4597638 4598702 D KEGG: pol:Bpro_4842 beta-lactamase-like; beta-lactamase-like protein 4597638..4598702 Shewanella sediminis HAW-EB3 5610123 YP_001475506.1 CDS Ssed_3774 NC_009831.1 4598893 4599150 D KEGG: slo:Shew_0695 protein of unknown function DUF331; hypothetical protein 4598893..4599150 Shewanella sediminis HAW-EB3 5610701 YP_001475507.1 CDS Ssed_3775 NC_009831.1 4599632 4600567 D KEGG: slo:Shew_0694 protein of unknown function DUF6, transmembrane; hypothetical protein 4599632..4600567 Shewanella sediminis HAW-EB3 5610702 YP_001475508.1 CDS Ssed_3776 NC_009831.1 4600869 4602152 R KEGG: slo:Shew_2121 diguanylate cyclase; diguanylate cyclase complement(4600869..4602152) Shewanella sediminis HAW-EB3 5610703 YP_001475509.1 CDS Ssed_3777 NC_009831.1 4602285 4603280 R KEGG: slo:Shew_2120 hypothetical protein; hypothetical protein complement(4602285..4603280) Shewanella sediminis HAW-EB3 5610704 YP_001475510.1 CDS Ssed_3778 NC_009831.1 4603411 4605300 R KEGG: reu:Reut_B4068 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; response regulator complement(4603411..4605300) Shewanella sediminis HAW-EB3 5609957 YP_001475511.1 CDS Ssed_3779 NC_009831.1 4605633 4606121 R hypothetical protein complement(4605633..4606121) Shewanella sediminis HAW-EB3 5609958 YP_001475512.1 CDS Ssed_3780 NC_009831.1 4607041 4607952 R KEGG: sbl:Sbal_3290 hypothetical protein; hypothetical protein complement(4607041..4607952) Shewanella sediminis HAW-EB3 5609959 YP_001475513.1 CDS Ssed_3781 NC_009831.1 4607974 4609119 R KEGG: ppr:PBPRB1231 hypothetical protein; hypothetical protein complement(4607974..4609119) Shewanella sediminis HAW-EB3 5609960 YP_001475514.1 CDS Ssed_3782 NC_009831.1 4609297 4610559 D KEGG: sbl:Sbal_2612 hypothetical protein; hypothetical protein 4609297..4610559 Shewanella sediminis HAW-EB3 5612558 YP_001475515.1 CDS Ssed_3783 NC_009831.1 4610864 4612504 R KEGG: dps:DP2520 sensory transduction system, regulatory protein; sensory transduction system, regulatory protein complement(4610864..4612504) Shewanella sediminis HAW-EB3 5612559 YP_001475516.1 CDS Ssed_3784 NC_009831.1 4612666 4614315 R KEGG: pca:Pcar_0095 sensory transduction system, regulatory protein; sensory transduction system, regulatory protein complement(4612666..4614315) Shewanella sediminis HAW-EB3 5612560 YP_001475517.1 CDS Ssed_3785 NC_009831.1 4614835 4615488 D catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 4614835..4615488 Shewanella sediminis HAW-EB3 5612561 YP_001475518.1 CDS Ssed_3786 NC_009831.1 4615644 4616303 D KEGG: slo:Shew_0687 heat shock protein DnaJ domain protein; molecular chaperone DnaJ 4615644..4616303 Shewanella sediminis HAW-EB3 5612848 YP_001475519.1 CDS Ssed_3787 NC_009831.1 4616387 4617136 D KEGG: slo:Shew_0686 DsbA oxidoreductase; DsbA oxidoreductase 4616387..4617136 Shewanella sediminis HAW-EB3 5612849 YP_001475520.1 CDS Ssed_3788 NC_009831.1 4617225 4618274 R KEGG: ana:all2291 glycosyltransferase; glycosyltransferase complement(4617225..4618274) Shewanella sediminis HAW-EB3 5612850 YP_001475521.1 CDS Ssed_3789 NC_009831.1 4618351 4618887 R KEGG: she:Shewmr4_3065 hypothetical protein; hypothetical protein complement(4618351..4618887) Shewanella sediminis HAW-EB3 5612217 YP_001475522.1 CDS Ssed_3790 NC_009831.1 4618986 4619513 R KEGG: slo:Shew_0678 protoporphyrinogen oxidase; protoporphyrinogen oxidase complement(4618986..4619513) Shewanella sediminis HAW-EB3 5612218 YP_001475523.1 CDS Ssed_3791 NC_009831.1 4619749 4621368 R KEGG: sfr:Sfri_0812 protein of unknown function DUF1111; hypothetical protein complement(4619749..4621368) Shewanella sediminis HAW-EB3 5612219 YP_001475524.1 CDS Ssed_3792 NC_009831.1 4621516 4622670 R KEGG: slo:Shew_0676 lipoprotein; lipoprotein complement(4621516..4622670) Shewanella sediminis HAW-EB3 5612220 YP_001475525.1 CDS Ssed_3793 NC_009831.1 4622732 4624129 R KEGG: slo:Shew_0675 hypothetical protein; hypothetical protein complement(4622732..4624129) Shewanella sediminis HAW-EB3 5612074 YP_001475526.1 CDS Ssed_3794 NC_009831.1 4624607 4625467 R KEGG: lic:LIC10984 hypothetical protein; hypothetical protein complement(4624607..4625467) Shewanella sediminis HAW-EB3 5612075 YP_001475527.1 CDS Ssed_3795 NC_009831.1 4625710 4626900 D KEGG: sbl:Sbal_3401 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4625710..4626900 Shewanella sediminis HAW-EB3 5612076 YP_001475528.1 CDS Ssed_3796 NC_009831.1 4626961 4627794 D KEGG: shw:Sputw3181_0906 hypothetical protein; hypothetical protein 4626961..4627794 Shewanella sediminis HAW-EB3 5612077 YP_001475529.1 CDS Ssed_3797 NC_009831.1 4628120 4628929 R KEGG: sbl:Sbal_3409 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(4628120..4628929) Shewanella sediminis HAW-EB3 5613906 YP_001475530.1 CDS Ssed_3798 NC_009831.1 4629600 4631144 D KEGG: sbl:Sbal_3411 hypothetical protein; hypothetical protein 4629600..4631144 Shewanella sediminis HAW-EB3 5613907 YP_001475531.1 CDS Ssed_3799 NC_009831.1 4631286 4631633 D hypothetical protein 4631286..4631633 Shewanella sediminis HAW-EB3 5613908 YP_001475532.1 CDS Ssed_3800 NC_009831.1 4631725 4632117 D hypothetical protein 4631725..4632117 Shewanella sediminis HAW-EB3 5613909 YP_001475533.1 CDS Ssed_3801 NC_009831.1 4632181 4632708 D KEGG: slo:Shew_0669 redoxin domain protein; redoxin domain-containing protein 4632181..4632708 Shewanella sediminis HAW-EB3 5612039 YP_001475534.1 CDS Ssed_3802 NC_009831.1 4632760 4633614 R KEGG: shm:Shewmr7_3358 protein of unknown function RIO1; hypothetical protein complement(4632760..4633614) Shewanella sediminis HAW-EB3 5612040 YP_001475535.1 CDS Ssed_3803 NC_009831.1 4633741 4634154 R KEGG: pfo:Pfl_5227 hypothetical protein; hypothetical protein complement(4633741..4634154) Shewanella sediminis HAW-EB3 5612041 YP_001475536.1 CDS Ssed_3804 NC_009831.1 4634239 4635987 R KEGG: she:Shewmr4_3076 hypothetical protein; hypothetical protein complement(4634239..4635987) Shewanella sediminis HAW-EB3 5612042 YP_001475537.1 CDS Ssed_3805 NC_009831.1 4636910 4637677 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(4636910..4637677) Shewanella sediminis HAW-EB3 5610739 YP_001475538.1 CDS Ssed_3806 NC_009831.1 4637670 4639433 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(4637670..4639433) Shewanella sediminis HAW-EB3 5610740 YP_001475539.1 CDS Ssed_3807 NC_009831.1 4639501 4641276 R KEGG: sfr:Sfri_3193 sulfite reductase (NADPH) flavoprotein, alpha chain; sulfite reductase (NADPH) flavoprotein, alpha chain complement(4639501..4641276) Shewanella sediminis HAW-EB3 5610741 YP_001475540.1 CDS Ssed_3808 NC_009831.1 4641624 4643006 D KEGG: vpa:VP1446 hypothetical protein; hypothetical protein 4641624..4643006 Shewanella sediminis HAW-EB3 5610742 YP_001475541.1 CDS Ssed_3809 NC_009831.1 4643317 4643592 D KEGG: slo:Shew_0661 hypothetical protein; hypothetical protein 4643317..4643592 Shewanella sediminis HAW-EB3 5613600 YP_001475542.1 CDS Ssed_3810 NC_009831.1 4643738 4644217 R KEGG: shw:Sputw3181_0878 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4643738..4644217) Shewanella sediminis HAW-EB3 5613601 YP_001475543.1 CDS Ssed_3811 NC_009831.1 4644614 4645423 R KEGG: son:SO3744 hypothetical protein; hypothetical protein complement(4644614..4645423) Shewanella sediminis HAW-EB3 5613602 YP_001475544.1 CDS Ssed_3812 NC_009831.1 4645486 4646916 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(4645486..4646916) Shewanella sediminis HAW-EB3 5613603 YP_001475545.1 CDS Ssed_3813 NC_009831.1 4647077 4648003 D KEGG: shm:Shewmr7_0885 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl acyltransferase 4647077..4648003 Shewanella sediminis HAW-EB3 5613326 YP_001475546.1 CDS Ssed_3814 NC_009831.1 4648375 4648629 D KEGG: vpa:VP1821 YefM protein; YefM protein 4648375..4648629 Shewanella sediminis HAW-EB3 5613327 YP_001475547.1 CDS Ssed_3815 NC_009831.1 4648622 4648885 D KEGG: vpa:VP1820 hypothetical protein; hypothetical protein 4648622..4648885 Shewanella sediminis HAW-EB3 5613328 YP_001475548.1 CDS Ssed_3816 NC_009831.1 4648937 4649851 R KEGG: she:Shewmr4_1826 ApbE family lipoprotein; ApbE family lipoprotein complement(4648937..4649851) Shewanella sediminis HAW-EB3 5613396 YP_001475549.1 CDS Ssed_3817 NC_009831.1 4649891 4651189 R KEGG: sfr:Sfri_1126 hypothetical protein; hypothetical protein complement(4649891..4651189) Shewanella sediminis HAW-EB3 5613397 YP_001475550.1 CDS Ssed_3818 NC_009831.1 4651180 4651395 R KEGG: sfr:Sfri_1125 lipoprotein; lipoprotein complement(4651180..4651395) Shewanella sediminis HAW-EB3 5613398 YP_001475551.1 CDS Ssed_3819 NC_009831.1 4651399 4651866 R KEGG: shm:Shewmr7_2154 redoxin domain protein; redoxin domain-containing protein complement(4651399..4651866) Shewanella sediminis HAW-EB3 5613399 YP_001475552.1 CDS Ssed_3820 NC_009831.1 4652192 4653373 R KEGG: son:SO4160 flagellar biosynthesis protein; flagellar biosynthesis protein complement(4652192..4653373) Shewanella sediminis HAW-EB3 5613280 YP_001475553.1 CDS Ssed_3821 NC_009831.1 4653466 4655190 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(4653466..4655190) Shewanella sediminis HAW-EB3 5613281 YP_001475554.1 CDS Ssed_3822 NC_009831.1 4655751 4658036 D KEGG: slo:Shew_0657 nitric oxide reductase (subunit B) transmembrane protein; nitric oxide reductase (subunit B) transmembrane protein 4655751..4658036 Shewanella sediminis HAW-EB3 5613282 YP_001475555.1 CDS Ssed_3823 NC_009831.1 4658242 4659795 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4658242..4659795 Shewanella sediminis HAW-EB3 5613283 YP_001475556.1 CDS Ssed_3824 NC_009831.1 4659955 4661364 D KEGG: slo:Shew_0655 peptidase M16 domain protein; peptidase M16 domain-containing protein 4659955..4661364 Shewanella sediminis HAW-EB3 5613272 YP_001475557.1 CDS Ssed_3825 NC_009831.1 4661361 4662896 D KEGG: slo:Shew_0654 peptidase M16 domain protein; peptidase M16 domain-containing protein 4661361..4662896 Shewanella sediminis HAW-EB3 5613273 YP_001475558.1 CDS Ssed_3826 NC_009831.1 4662914 4664134 D KEGG: slo:Shew_0631 AFG1-family ATPase; AFG1 family ATPase 4662914..4664134 Shewanella sediminis HAW-EB3 5613274 YP_001475559.1 CDS Ssed_3827 NC_009831.1 4664317 4666404 D KEGG: pen:PSEEN0903 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis transducer 4664317..4666404 Shewanella sediminis HAW-EB3 5613275 YP_001475560.1 CDS Ssed_3828 NC_009831.1 4666581 4668821 D KEGG: cps:CPS_4816 hypothetical protein; hypothetical protein 4666581..4668821 Shewanella sediminis HAW-EB3 5613012 YP_001475561.1 CDS Ssed_3829 NC_009831.1 4669032 4669823 D KEGG: vpa:VP1159 ABC transport system permease; ABC transporter permease 4669032..4669823 Shewanella sediminis HAW-EB3 5613013 YP_001475562.1 CDS Ssed_3830 NC_009831.1 4669889 4670635 R KEGG: slo:Shew_0629 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(4669889..4670635) Shewanella sediminis HAW-EB3 5613014 YP_001475563.1 CDS Ssed_3831 NC_009831.1 4670885 4671334 R KEGG: vvy:VV2395 hypothetical protein; hypothetical protein complement(4670885..4671334) Shewanella sediminis HAW-EB3 5613015 YP_001475564.1 CDS Ssed_3832 NC_009831.1 4671487 4672251 R hypothetical protein complement(4671487..4672251) Shewanella sediminis HAW-EB3 5613148 YP_001475565.1 CDS Ssed_3833 NC_009831.1 4672431 4675295 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(4672431..4675295) Shewanella sediminis HAW-EB3 5613149 YP_001475566.1 CDS Ssed_3834 NC_009831.1 4675521 4676480 D KEGG: slo:Shew_0627 hypothetical protein; hypothetical protein 4675521..4676480 Shewanella sediminis HAW-EB3 5613150 YP_001475567.1 CDS Ssed_3835 NC_009831.1 4676494 4677393 D KEGG: sbl:Sbal_3447 protein of unknown function DUF350; hypothetical protein 4676494..4677393 Shewanella sediminis HAW-EB3 5613151 YP_001475568.1 CDS Ssed_3836 NC_009831.1 4677484 4679271 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4677484..4679271 Shewanella sediminis HAW-EB3 5612739 YP_001475569.1 CDS Ssed_3837 NC_009831.1 4679464 4679877 D KEGG: sbl:Sbal_3449 hypothetical protein; hypothetical protein 4679464..4679877 Shewanella sediminis HAW-EB3 5612740 YP_001475570.1 CDS Ssed_3838 NC_009831.1 4679939 4680625 D KEGG: slo:Shew_0623 phage shock protein A, PspA; phage shock protein A, PspA 4679939..4680625 Shewanella sediminis HAW-EB3 5612741 YP_001475571.1 CDS Ssed_3839 NC_009831.1 4680822 4681475 D KEGG: sbl:Sbal_3451 hypothetical protein; hypothetical protein 4680822..4681475 Shewanella sediminis HAW-EB3 5612742 YP_001475572.1 CDS Ssed_3840 NC_009831.1 4681542 4681871 D KEGG: shw:Sputw3181_0851 hypothetical protein; hypothetical protein 4681542..4681871 Shewanella sediminis HAW-EB3 5611792 YP_001475573.1 CDS Ssed_3841 NC_009831.1 4681943 4682749 D KEGG: slo:Shew_0620 ion transport 2 domain protein; ion transport 2 domain-containing protein 4681943..4682749 Shewanella sediminis HAW-EB3 5611793 YP_001475574.1 CDS Ssed_3842 NC_009831.1 4682871 4684373 R KEGG: slo:Shew_0619 adenylate cyclase; adenylate cyclase complement(4682871..4684373) Shewanella sediminis HAW-EB3 5611794 YP_001475575.1 CDS Ssed_3843 NC_009831.1 4684660 4685340 D KEGG: slo:Shew_0618 protein of unknown function DUF47; hypothetical protein 4684660..4685340 Shewanella sediminis HAW-EB3 5611698 YP_001475576.1 CDS Ssed_3844 NC_009831.1 4685365 4686633 D KEGG: slo:Shew_0617 phosphate transporter; phosphate transporter 4685365..4686633 Shewanella sediminis HAW-EB3 5611699 YP_001475577.1 CDS Ssed_3845 NC_009831.1 4686967 4687512 D KEGG: slo:Shew_0616 SH3 domain protein domain protein; SH3 domain-containing protein 4686967..4687512 Shewanella sediminis HAW-EB3 5611700 YP_001475578.1 CDS Ssed_3846 NC_009831.1 4687890 4691084 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 4687890..4691084 Shewanella sediminis HAW-EB3 5611701 YP_001475579.1 CDS Ssed_3847 NC_009831.1 4691215 4691391 D KEGG: saz:Sama_2677 conserved hypothetical protein; hypothetical protein 4691215..4691391 Shewanella sediminis HAW-EB3 5611690 YP_001475580.1 CDS Ssed_3848 NC_009831.1 4691458 4693272 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(4691458..4693272) Shewanella sediminis HAW-EB3 5611691 YP_001475581.1 CDS Ssed_3849 NC_009831.1 4693269 4695098 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein complement(4693269..4695098) Shewanella sediminis HAW-EB3 5611692 YP_001475582.1 CDS Ssed_3850 NC_009831.1 4695351 4695698 R KEGG: slo:Shew_0605 hypothetical protein; hypothetical protein complement(4695351..4695698) Shewanella sediminis HAW-EB3 5611693 YP_001475583.1 CDS Ssed_3851 NC_009831.1 4696231 4697772 D KEGG: slo:Shew_0604 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 4696231..4697772 Shewanella sediminis HAW-EB3 5611655 YP_001475584.1 CDS Ssed_3852 NC_009831.1 4698726 4700102 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(4698726..4700102) Shewanella sediminis HAW-EB3 5611656 YP_001475585.1 CDS Ssed_3853 NC_009831.1 4700624 4701319 R KEGG: dvl:Dvul_0140 lipoprotein; hypothetical protein complement(4700624..4701319) Shewanella sediminis HAW-EB3 5611657 YP_001475586.1 CDS Ssed_3854 NC_009831.1 4701668 4703077 R KEGG: slo:Shew_0597 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4701668..4703077) Shewanella sediminis HAW-EB3 5611658 YP_001475587.1 CDS Ssed_3855 NC_009831.1 4703582 4703893 D KEGG: slo:Shew_0595 hypothetical protein; hypothetical protein 4703582..4703893 Shewanella sediminis HAW-EB3 5611647 YP_001475588.1 CDS Ssed_3856 NC_009831.1 4704034 4705956 D KEGG: slo:Shew_0596 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4704034..4705956 Shewanella sediminis HAW-EB3 5611648 YP_001475589.1 CDS Ssed_3857 NC_009831.1 4706382 4707263 D KEGG: cps:CPS_4655 transcriptional regulator, AraC family; AraC family transcriptional regulator 4706382..4707263 Shewanella sediminis HAW-EB3 5611649 YP_001475590.1 CDS Ssed_3858 NC_009831.1 4707677 4709296 D KEGG: sbl:Sbal_4189 Ig family protein; hypothetical protein 4707677..4709296 Shewanella sediminis HAW-EB3 5611650 YP_001475591.1 CDS Ssed_3859 NC_009831.1 4709753 4710454 D KEGG: bld:BLi02636 SinR; hypothetical protein 4709753..4710454 Shewanella sediminis HAW-EB3 5611412 YP_001475592.1 CDS Ssed_3860 NC_009831.1 4710572 4710772 R KEGG: shw:Sputw3181_0827 hypothetical protein; hypothetical protein complement(4710572..4710772) Shewanella sediminis HAW-EB3 5611413 YP_001475593.1 CDS Ssed_3861 NC_009831.1 4710966 4712876 D KEGG: slo:Shew_0593 ABC transporter-related protein; ABC transporter-like protein 4710966..4712876 Shewanella sediminis HAW-EB3 5611414 YP_001475594.1 CDS Ssed_3862 NC_009831.1 4712955 4713392 D KEGG: slo:Shew_0592 hypothetical protein; hypothetical protein 4712955..4713392 Shewanella sediminis HAW-EB3 5611415 YP_001475595.1 CDS Ssed_3863 NC_009831.1 4713451 4715046 R KEGG: slo:Shew_0591 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(4713451..4715046) Shewanella sediminis HAW-EB3 5611603 YP_001475596.1 CDS Ssed_3864 NC_009831.1 4715121 4715636 R KEGG: slo:Shew_0590 hypothetical protein; hypothetical protein complement(4715121..4715636) Shewanella sediminis HAW-EB3 5611604 YP_001475597.1 CDS Ssed_3865 NC_009831.1 4715919 4716890 D KEGG: sbl:Sbal_3484 alpha/beta hydrolase fold; alpha/beta hydrolase 4715919..4716890 Shewanella sediminis HAW-EB3 5611605 YP_001475598.1 CDS Ssed_3866 NC_009831.1 4716893 4717129 D KEGG: sfr:Sfri_3289 hypothetical protein; hypothetical protein 4716893..4717129 Shewanella sediminis HAW-EB3 5611606 YP_001475599.1 CDS Ssed_3867 NC_009831.1 4717252 4718139 D KEGG: slo:Shew_0587 phosphoribulokinase; phosphoribulokinase 4717252..4718139 Shewanella sediminis HAW-EB3 5609676 YP_001475600.1 CDS Ssed_3868 NC_009831.1 4718723 4721857 R KEGG: pha:PSHAa0579 cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA); cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA) complement(4718723..4721857) Shewanella sediminis HAW-EB3 5609677 YP_001475601.1 CDS Ssed_3869 NC_009831.1 4721870 4723168 R KEGG: pha:PSHAa0578 cobalt-zinc-cadmium resistance protein; (cation efflux system protein); cobalt-zinc-cadmium resistance protein (cation efflux system protein) complement(4721870..4723168) Shewanella sediminis HAW-EB3 5609678 YP_001475602.1 CDS Ssed_3870 NC_009831.1 4723168 4724514 R KEGG: ilo:IL0779 Co/Zn/Cd efflux system component; Co/Zn/Cd efflux system protein complement(4723168..4724514) Shewanella sediminis HAW-EB3 5611599 YP_001475603.1 CDS Ssed_3871 NC_009831.1 4724652 4725050 R hypothetical protein complement(4724652..4725050) Shewanella sediminis HAW-EB3 5611600 YP_001475604.1 CDS Ssed_3872 NC_009831.1 4725366 4726142 R KEGG: sbl:Sbal_0579 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4725366..4726142) Shewanella sediminis HAW-EB3 5611601 YP_001475605.1 CDS Ssed_3873 NC_009831.1 4726590 4727225 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4726590..4727225 Shewanella sediminis HAW-EB3 5611602 YP_001475606.1 CDS Ssed_3874 NC_009831.1 4727308 4727646 D KEGG: son:SO0623 hypothetical protein; hypothetical protein 4727308..4727646 Shewanella sediminis HAW-EB3 5611515 YP_001475607.1 CDS Ssed_3875 NC_009831.1 4727694 4728368 D KEGG: slo:Shew_0583 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4727694..4728368 Shewanella sediminis HAW-EB3 5611516 YP_001475608.1 CDS Ssed_3876 NC_009831.1 4728365 4729690 D KEGG: slo:Shew_0582 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4728365..4729690 Shewanella sediminis HAW-EB3 5611517 YP_001475609.1 CDS Ssed_3877 NC_009831.1 4730169 4731959 R KEGG: slo:Shew_3112 flavocytochrome c; succinate dehydrogenase complement(4730169..4731959) Shewanella sediminis HAW-EB3 5611518 YP_001475610.1 CDS Ssed_3878 NC_009831.1 4732302 4734380 D KEGG: slo:Shew_3113 histidine kinase; histidine kinase 4732302..4734380 Shewanella sediminis HAW-EB3 5611039 YP_001475611.1 CDS Ssed_3879 NC_009831.1 4734377 4735759 D KEGG: sfr:Sfri_3688 two component, sigma54 specific, transcriptional regulator, fis family protein; two component, sigma54 specific, transcriptional regulator, fis family protein 4734377..4735759 Shewanella sediminis HAW-EB3 5611040 YP_001475612.1 CDS Ssed_3880 NC_009831.1 4735808 4737850 R KEGG: vvu:VV2_0464 signal transduction histidine kinase; Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein complement(4735808..4737850) Shewanella sediminis HAW-EB3 5611041 YP_001475613.1 CDS Ssed_3881 NC_009831.1 4737847 4739082 R KEGG: azo:azo0137 aliphatic amidase expression-regulating protein; aliphatic amidase expression-regulating protein complement(4737847..4739082) Shewanella sediminis HAW-EB3 5611042 YP_001475614.1 CDS Ssed_3882 NC_009831.1 4739244 4740518 R KEGG: slo:Shew_3115 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(4739244..4740518) Shewanella sediminis HAW-EB3 5613476 YP_001475615.1 CDS Ssed_3883 NC_009831.1 4741037 4742257 R KEGG: slo:Shew_3116 hypothetical protein; hypothetical protein complement(4741037..4742257) Shewanella sediminis HAW-EB3 5613477 YP_001475616.1 CDS Ssed_3884 NC_009831.1 4742259 4742912 R KEGG: sfr:Sfri_0526 hypothetical protein; hypothetical protein complement(4742259..4742912) Shewanella sediminis HAW-EB3 5613478 YP_001475617.1 CDS Ssed_3885 NC_009831.1 4742912 4746586 R KEGG: slo:Shew_3118 hypothetical protein; hypothetical protein complement(4742912..4746586) Shewanella sediminis HAW-EB3 5613479 YP_001475618.1 CDS Ssed_3886 NC_009831.1 4746969 4748348 R KEGG: sbl:Sbal_3506 amino acid carrier protein; amino acid carrier protein complement(4746969..4748348) Shewanella sediminis HAW-EB3 5611182 YP_001475619.1 CDS Ssed_3887 NC_009831.1 4749263 4749964 R KEGG: shn:Shewana3_0631 hypothetical protein; hypothetical protein complement(4749263..4749964) Shewanella sediminis HAW-EB3 5611183 YP_001475620.1 CDS Ssed_3888 NC_009831.1 4750247 4752439 D KEGG: shm:Shewmr7_3399 TonB-dependent receptor; TonB-dependent receptor 4750247..4752439 Shewanella sediminis HAW-EB3 5611184 YP_001475621.1 CDS Ssed_3889 NC_009831.1 4752707 4753894 D KEGG: slo:Shew_3120 phosphate-selective porin O and P; phosphate-selective porin O and P 4752707..4753894 Shewanella sediminis HAW-EB3 5611185 YP_001475622.1 CDS Ssed_3890 NC_009831.1 4754050 4754619 D KEGG: slo:Shew_3121 FMN-binding domain protein; FMN-binding domain-containing protein 4754050..4754619 Shewanella sediminis HAW-EB3 5614175 YP_001475623.1 CDS Ssed_3891 NC_009831.1 4754705 4755550 D KEGG: slo:Shew_3122 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 4754705..4755550 Shewanella sediminis HAW-EB3 5614176 YP_001475624.1 CDS Ssed_3892 NC_009831.1 4755639 4757573 R hypothetical protein complement(4755639..4757573) Shewanella sediminis HAW-EB3 5614177 YP_001475625.1 CDS Ssed_3893 NC_009831.1 4757855 4759777 R KEGG: pat:Patl_3292 protein of unknown function DUF1566; hypothetical protein complement(4757855..4759777) Shewanella sediminis HAW-EB3 5614178 YP_001475626.1 CDS Ssed_3894 NC_009831.1 4760183 4762546 R KEGG: slo:Shew_3123 penicillin-binding protein 1B; peptidoglycan glycosyltransferase complement(4760183..4762546) Shewanella sediminis HAW-EB3 5611702 YP_001475627.1 CDS Ssed_3895 NC_009831.1 4762715 4765282 R KEGG: sbl:Sbal_0582 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB complement(4762715..4765282) Shewanella sediminis HAW-EB3 5611703 YP_001475628.1 CDS Ssed_3896 NC_009831.1 4765585 4766259 D KEGG: slo:Shew_3126 2'-5' RNA ligase; 2'-5' RNA ligase 4765585..4766259 Shewanella sediminis HAW-EB3 5611704 YP_001475629.1 CDS Ssed_3897 NC_009831.1 4766380 4767657 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase complement(4766380..4767657) Shewanella sediminis HAW-EB3 5611282 YP_001475630.1 CDS Ssed_3898 NC_009831.1 4767917 4768687 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 4767917..4768687 Shewanella sediminis HAW-EB3 5611283 YP_001475631.1 CDS Ssed_3899 NC_009831.1 4768847 4769290 D KEGG: shw:Sputw3181_0815 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator 4768847..4769290 Shewanella sediminis HAW-EB3 5611284 YP_001475632.1 CDS Ssed_3900 NC_009831.1 4769534 4770451 D KEGG: she:Shewmr4_0729 glutamyl-tRNA synthetase, class Ic; glutamyl-tRNA synthetase 4769534..4770451 Shewanella sediminis HAW-EB3 5611285 YP_001475633.1 CDS Ssed_3901 NC_009831.1 4770535 4772025 D KEGG: slo:Shew_3131 poly(A) polymerase; polynucleotide adenylyltransferase 4770535..4772025 Shewanella sediminis HAW-EB3 5611343 YP_001475634.1 CDS Ssed_3902 NC_009831.1 4772025 4772528 D KEGG: sbl:Sbal_3493 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 4772025..4772528 Shewanella sediminis HAW-EB3 5611344 YP_001475635.1 CDS panB NC_009831.1 4772630 4773424 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4772630..4773424 Shewanella sediminis HAW-EB3 5611345 YP_001475636.1 CDS panC NC_009831.1 4773543 4774388 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 4773543..4774388 Shewanella sediminis HAW-EB3 5611346 YP_001475637.1 CDS Ssed_3905 NC_009831.1 4774692 4775213 D KEGG: shn:Shewana3_3410 hypothetical protein; hypothetical protein 4774692..4775213 Shewanella sediminis HAW-EB3 5611200 YP_001475638.1 CDS Ssed_3906 NC_009831.1 4775358 4775762 D KEGG: slo:Shew_3138 hypothetical protein; hypothetical protein 4775358..4775762 Shewanella sediminis HAW-EB3 5611201 YP_001475639.1 CDS Ssed_3907 NC_009831.1 4775787 4776152 D KEGG: slo:Shew_3139 hypothetical protein; hypothetical protein 4775787..4776152 Shewanella sediminis HAW-EB3 5611202 YP_001475640.1 CDS Ssed_3908 NC_009831.1 4776241 4777017 R KEGG: slo:Shew_3140 ABC-2 type transporter; ABC transporter complement(4776241..4777017) Shewanella sediminis HAW-EB3 5611203 YP_001475641.1 CDS Ssed_3909 NC_009831.1 4777014 4777973 R KEGG: slo:Shew_3141 ABC transporter-related protein; ABC transporter-like protein complement(4777014..4777973) Shewanella sediminis HAW-EB3 5610017 YP_001475642.1 CDS Ssed_3910 NC_009831.1 4778087 4778617 R KEGG: slo:Shew_3142 hypoxanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(4778087..4778617) Shewanella sediminis HAW-EB3 5610018 YP_001475643.1 CDS Ssed_3911 NC_009831.1 4778636 4779295 R KEGG: slo:Shew_3143 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase complement(4778636..4779295) Shewanella sediminis HAW-EB3 5610019 YP_001475644.1 CDS Ssed_3912 NC_009831.1 4779334 4780797 R KEGG: slo:Shew_3144 UDP-N-acetylmuramate; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(4779334..4780797) Shewanella sediminis HAW-EB3 5610020 YP_001475645.1 CDS Ssed_3913 NC_009831.1 4781546 4781836 D KEGG: slo:Shew_0501 protein of unknown function DUF134; hypothetical protein 4781546..4781836 Shewanella sediminis HAW-EB3 5610212 YP_001475646.1 CDS Ssed_3914 NC_009831.1 4781901 4782548 D KEGG: shw:Sputw3181_3482 hypothetical protein; hypothetical protein 4781901..4782548 Shewanella sediminis HAW-EB3 5610213 YP_001475647.1 CDS Ssed_3915 NC_009831.1 4782707 4783777 R KEGG: mgm:Mmc1_3408 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase complement(4782707..4783777) Shewanella sediminis HAW-EB3 5610214 YP_001475648.1 CDS tnaA NC_009831.1 4784049 4785446 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(4784049..4785446) Shewanella sediminis HAW-EB3 5610215 YP_001475649.1 CDS Ssed_3917 NC_009831.1 4785784 4786404 R hypothetical protein complement(4785784..4786404) Shewanella sediminis HAW-EB3 5611741 YP_001475650.1 CDS Ssed_3918 NC_009831.1 4786721 4787425 D KEGG: sbl:Sbal_3799 protein of unknown function DUF541; hypothetical protein 4786721..4787425 Shewanella sediminis HAW-EB3 5611742 YP_001475651.1 CDS Ssed_3919 NC_009831.1 4787501 4789549 R KEGG: pin:Ping_0636 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(4787501..4789549) Shewanella sediminis HAW-EB3 5611743 YP_001475652.1 CDS Ssed_3920 NC_009831.1 4789960 4790700 D KEGG: sdn:Sden_0704 amino acid-binding protein; amino acid-binding protein 4789960..4790700 Shewanella sediminis HAW-EB3 5611744 YP_001475653.1 CDS Ssed_3921 NC_009831.1 4790860 4791756 D KEGG: slo:Shew_3007 transcriptional regulator, LysR family; LysR family transcriptional regulator 4790860..4791756 Shewanella sediminis HAW-EB3 5612643 YP_001475654.1 CDS Ssed_3922 NC_009831.1 4791812 4792381 R KEGG: slo:Shew_3006 hypothetical protein; hypothetical protein complement(4791812..4792381) Shewanella sediminis HAW-EB3 5612644 YP_001475655.1 CDS Ssed_3923 NC_009831.1 4792386 4793759 R KEGG: slo:Shew_3005 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(4792386..4793759) Shewanella sediminis HAW-EB3 5612645 YP_001475656.1 CDS Ssed_3924 NC_009831.1 4793770 4794513 R KEGG: slo:Shew_3004 protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(4793770..4794513) Shewanella sediminis HAW-EB3 5612385 YP_001475657.1 CDS Ssed_3925 NC_009831.1 4794969 4795967 D KEGG: sfr:Sfri_0588 WD-40 repeat protein; WD-40 repeat-containing protein 4794969..4795967 Shewanella sediminis HAW-EB3 5612386 YP_001475658.1 CDS Ssed_3926 NC_009831.1 4796096 4796887 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(4796096..4796887) Shewanella sediminis HAW-EB3 5612387 YP_001475659.1 CDS Ssed_3927 NC_009831.1 4797122 4797652 R KEGG: aha:AHA_2414 acetyltransferase; acetyltransferase complement(4797122..4797652) Shewanella sediminis HAW-EB3 5612388 YP_001475660.1 CDS Ssed_3928 NC_009831.1 4798053 4799336 R KEGG: slo:Shew_3172 4-aminobutyrate aminotransferase; (S)-3-amino-2-methylpropionate transaminase complement(4798053..4799336) Shewanella sediminis HAW-EB3 5612581 YP_001475661.1 CDS Ssed_3929 NC_009831.1 4799466 4800935 R KEGG: slo:Shew_3173 succinic semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase complement(4799466..4800935) Shewanella sediminis HAW-EB3 5612582 YP_001475662.1 CDS Ssed_3930 NC_009831.1 4801077 4802021 D KEGG: slo:Shew_3174 transcriptional regulator, LysR family; LysR family transcriptional regulator 4801077..4802021 Shewanella sediminis HAW-EB3 5612583 YP_001475663.1 CDS Ssed_3931 NC_009831.1 4802065 4802706 R KEGG: aha:AHA_3512 transporter, LysE family; amino acid transporter LysE complement(4802065..4802706) Shewanella sediminis HAW-EB3 5612584 YP_001475664.1 CDS Ssed_3932 NC_009831.1 4802900 4803688 R KEGG: hch:HCH_05487 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter periplasmic protein complement(4802900..4803688) Shewanella sediminis HAW-EB3 5612915 YP_001475665.1 CDS Ssed_3933 NC_009831.1 4803828 4804376 R KEGG: spc:Sputcn32_1257 hypothetical protein; hypothetical protein complement(4803828..4804376) Shewanella sediminis HAW-EB3 5612916 YP_001475666.1 CDS Ssed_3934 NC_009831.1 4804723 4806096 D KEGG: slo:Shew_3178 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 4804723..4806096 Shewanella sediminis HAW-EB3 5612917 YP_001475667.1 CDS Ssed_3935 NC_009831.1 4806355 4807047 D KEGG: slo:Shew_3179 hypothetical protein; hypothetical protein 4806355..4807047 Shewanella sediminis HAW-EB3 5612918 YP_001475668.1 CDS Ssed_3936 NC_009831.1 4807155 4807940 D KEGG: slo:Shew_3180 pseudouridine synthase; pseudouridine synthase 4807155..4807940 Shewanella sediminis HAW-EB3 5613442 YP_001475669.1 CDS Ssed_3937 NC_009831.1 4807998 4810154 R KEGG: slo:Shew_3187 hypothetical protein; hypothetical protein complement(4807998..4810154) Shewanella sediminis HAW-EB3 5613443 YP_001475670.1 CDS Ssed_3938 NC_009831.1 4810365 4811543 R KEGG: shm:Shewmr7_0948 aromatic amino acid permease; aromatic amino acid permease complement(4810365..4811543) Shewanella sediminis HAW-EB3 5613444 YP_001475671.1 CDS Ssed_3939 NC_009831.1 4812222 4812836 D KEGG: son:SO1071 hypothetical protein; hypothetical protein 4812222..4812836 Shewanella sediminis HAW-EB3 5613445 YP_001475672.1 CDS Ssed_3940 NC_009831.1 4812899 4814380 R KEGG: sbl:Sbal_0894 catalase; catalase complement(4812899..4814380) Shewanella sediminis HAW-EB3 5612976 YP_001475673.1 CDS Ssed_3941 NC_009831.1 4814828 4815067 R KEGG: sbl:Sbal_0893 hypothetical protein; hypothetical protein complement(4814828..4815067) Shewanella sediminis HAW-EB3 5612977 YP_001475674.1 CDS Ssed_3942 NC_009831.1 4815199 4815636 R KEGG: slo:Shew_3192 uncharacterized domain 1 protein; hypothetical protein complement(4815199..4815636) Shewanella sediminis HAW-EB3 5612978 YP_001475675.1 CDS Ssed_3943 NC_009831.1 4816395 4819052 R KEGG: slo:Shew_3193 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(4816395..4819052) Shewanella sediminis HAW-EB3 5612979 YP_001475676.1 CDS Ssed_3944 NC_009831.1 4819536 4822214 R KEGG: slo:Shew_3193 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(4819536..4822214) Shewanella sediminis HAW-EB3 5611531 YP_001475677.1 CDS Ssed_3945 NC_009831.1 4822918 4823583 R KEGG: she:Shewmr4_0720 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(4822918..4823583) Shewanella sediminis HAW-EB3 5611532 YP_001475678.1 CDS Ssed_3946 NC_009831.1 4823883 4824494 R KEGG: slo:Shew_3195 hypothetical protein; hypothetical protein complement(4823883..4824494) Shewanella sediminis HAW-EB3 5611533 YP_001475679.1 CDS Ssed_3947 NC_009831.1 4824711 4825946 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4824711..4825946 Shewanella sediminis HAW-EB3 5611534 YP_001475680.1 CDS Ssed_3948 NC_009831.1 4826091 4827056 D KEGG: slo:Shew_3198 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 4826091..4827056 Shewanella sediminis HAW-EB3 5613859 YP_001475681.1 CDS Ssed_3949 NC_009831.1 4827258 4827617 D KEGG: sil:SPO2248 DnaK suppressor protein; DnaK suppressor protein 4827258..4827617 Shewanella sediminis HAW-EB3 5613860 YP_001475682.1 CDS Ssed_3950 NC_009831.1 4827736 4828980 D KEGG: noc:Noc_0960 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4827736..4828980 Shewanella sediminis HAW-EB3 5613861 YP_001475683.1 CDS Ssed_3951 NC_009831.1 4829202 4829768 R KEGG: gur:Gura_3739 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; Thiol-disulfide isomerase and thioredoxins-like protein complement(4829202..4829768) Shewanella sediminis HAW-EB3 5612816 YP_001475684.1 CDS Ssed_3952 NC_009831.1 4829891 4830301 R hypothetical protein complement(4829891..4830301) Shewanella sediminis HAW-EB3 5612817 YP_001475685.1 CDS Ssed_3953 NC_009831.1 4830710 4831378 D KEGG: slo:Shew_3201 ABC transporter-related protein; ABC transporter-like protein 4830710..4831378 Shewanella sediminis HAW-EB3 5612818 YP_001475686.1 CDS Ssed_3954 NC_009831.1 4831371 4833920 D KEGG: slo:Shew_3202 protein of unknown function DUF214; hypothetical protein 4831371..4833920 Shewanella sediminis HAW-EB3 5612819 YP_001475687.1 CDS Ssed_3955 NC_009831.1 4833917 4835098 D KEGG: slo:Shew_3203 hypothetical protein; hypothetical protein 4833917..4835098 Shewanella sediminis HAW-EB3 5613855 YP_001475688.1 CDS Ssed_3956 NC_009831.1 4835499 4835753 D KEGG: sbl:Sbal_3510 NapD family protein; NapD family protein 4835499..4835753 Shewanella sediminis HAW-EB3 5613856 YP_001475689.1 CDS Ssed_3957 NC_009831.1 4835828 4838308 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 4835828..4838308 Shewanella sediminis HAW-EB3 5613857 YP_001475690.1 CDS napG NC_009831.1 4838379 4839113 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 4838379..4839113 Shewanella sediminis HAW-EB3 5613858 YP_001475691.1 CDS napH NC_009831.1 4839110 4840018 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 4839110..4840018 Shewanella sediminis HAW-EB3 5613113 YP_001475692.1 CDS Ssed_3960 NC_009831.1 4840015 4840431 D KEGG: slo:Shew_3209 nitrate reductase cytochrome c-type subunit (NapB); nitrate reductase cytochrome c-type subunit 4840015..4840431 Shewanella sediminis HAW-EB3 5613114 YP_001475693.1 CDS Ssed_3961 NC_009831.1 4840552 4841574 R KEGG: pat:Patl_2703 diguanylate cyclase; diguanylate cyclase complement(4840552..4841574) Shewanella sediminis HAW-EB3 5613115 YP_001475694.1 CDS Ssed_3962 NC_009831.1 4841853 4844441 D KEGG: slo:Shew_3215 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 4841853..4844441 Shewanella sediminis HAW-EB3 5613116 YP_001475695.1 CDS Ssed_3963 NC_009831.1 4844395 4845279 R KEGG: sfr:Sfri_2734 hypothetical protein; hypothetical protein complement(4844395..4845279) Shewanella sediminis HAW-EB3 5613747 YP_001475696.1 CDS Ssed_3964 NC_009831.1 4845402 4846610 D KEGG: slo:Shew_3217 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4845402..4846610 Shewanella sediminis HAW-EB3 5613748 YP_001475697.1 CDS Ssed_3965 NC_009831.1 4846844 4847104 D KEGG: slo:Shew_3214 hypothetical protein; hypothetical protein 4846844..4847104 Shewanella sediminis HAW-EB3 5613749 YP_001475698.1 CDS Ssed_3966 NC_009831.1 4847213 4848583 R KEGG: fjo:Fjoh_2582 alpha-L-glutamate ligase, RimK family; alpha-L-glutamate ligase complement(4847213..4848583) Shewanella sediminis HAW-EB3 5613750 YP_001475699.1 CDS Ssed_3967 NC_009831.1 4848849 4853402 R KEGG: slo:Shew_3218 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase subunit L complement(4848849..4853402) Shewanella sediminis HAW-EB3 5614204 YP_001475700.1 CDS Ssed_3968 NC_009831.1 4853524 4854435 D KEGG: slo:Shew_3219 transcriptional regulator, LysR family; LysR family transcriptional regulator 4853524..4854435 Shewanella sediminis HAW-EB3 5614205 YP_001475701.1 CDS Ssed_3969 NC_009831.1 4855081 4856253 D KEGG: slo:Shew_3221 hypothetical protein; hypothetical protein 4855081..4856253 Shewanella sediminis HAW-EB3 5614206 YP_001475702.1 CDS Ssed_3970 NC_009831.1 4856335 4856910 D KEGG: slo:Shew_3222 protein of unknown function DUF335, SprT; hypothetical protein 4856335..4856910 Shewanella sediminis HAW-EB3 5614207 YP_001475703.1 CDS Ssed_3971 NC_009831.1 4857133 4857888 D KEGG: slo:Shew_3223 deoxyribonuclease I; deoxyribonuclease I 4857133..4857888 Shewanella sediminis HAW-EB3 5613973 YP_001475704.1 CDS Ssed_3972 NC_009831.1 4857896 4858627 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4857896..4858627 Shewanella sediminis HAW-EB3 5613974 YP_001475705.1 CDS Ssed_3973 NC_009831.1 4858698 4859648 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 4858698..4859648 Shewanella sediminis HAW-EB3 5613975 YP_001475706.1 CDS Ssed_3974 NC_009831.1 4859659 4861032 D KEGG: slo:Shew_3226 alkaline phosphatase; alkaline phosphatase 4859659..4861032 Shewanella sediminis HAW-EB3 5613976 YP_001475707.1 CDS Ssed_3975 NC_009831.1 4861067 4863553 R KEGG: slo:Shew_3227 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(4861067..4863553) Shewanella sediminis HAW-EB3 5611060 YP_001475708.1 CDS Ssed_3976 NC_009831.1 4863558 4864739 R KEGG: slo:Shew_3228 hypothetical protein; hypothetical protein complement(4863558..4864739) Shewanella sediminis HAW-EB3 5611061 YP_001475709.1 CDS Ssed_3977 NC_009831.1 4864723 4865136 R KEGG: slo:Shew_3229 hypothetical protein; hypothetical protein complement(4864723..4865136) Shewanella sediminis HAW-EB3 5611062 YP_001475710.1 CDS Ssed_3978 NC_009831.1 4865578 4866609 D KEGG: slo:Shew_3230 rRNA (guanine-N(2)-)-methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 4865578..4866609 Shewanella sediminis HAW-EB3 5610419 YP_001475711.1 CDS Ssed_3979 NC_009831.1 4866815 4868485 D KEGG: slo:Shew_3231 protein of unknown function DUF342; hypothetical protein 4866815..4868485 Shewanella sediminis HAW-EB3 5610420 YP_001475712.1 CDS Ssed_3980 NC_009831.1 4868650 4869822 D KEGG: slo:Shew_3232 peptidase M50; peptidase M50 4868650..4869822 Shewanella sediminis HAW-EB3 5610421 YP_001475713.1 CDS Ssed_3981 NC_009831.1 4869972 4870934 D KEGG: slo:Shew_3242 transcriptional regulator, LysR family; LysR family transcriptional regulator 4869972..4870934 Shewanella sediminis HAW-EB3 5610422 YP_001475714.1 CDS Ssed_3982 NC_009831.1 4871181 4874261 R KEGG: slo:Shew_3243 molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding region complement(4871181..4874261) Shewanella sediminis HAW-EB3 5614146 YP_001475715.1 CDS Ssed_3983 NC_009831.1 4874266 4874982 R KEGG: slo:Shew_3244 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(4874266..4874982) Shewanella sediminis HAW-EB3 5614147 YP_001475716.1 CDS Ssed_3984 NC_009831.1 4874992 4875888 R KEGG: slo:Shew_3245 polysulphide reductase, NrfD; polysulfide reductase, NrfD complement(4874992..4875888) Shewanella sediminis HAW-EB3 5614148 YP_001475717.1 CDS Ssed_3985 NC_009831.1 4876511 4877188 D KEGG: slo:Shew_3246 hypothetical protein; hypothetical protein 4876511..4877188 Shewanella sediminis HAW-EB3 5614149 YP_001475718.1 CDS Ssed_3986 NC_009831.1 4877720 4879105 R KEGG: vfi:VFA0209 phosphatidylserine decarboxylase; phosphatidylserine decarboxylase complement(4877720..4879105) Shewanella sediminis HAW-EB3 5613517 YP_001475719.1 CDS Ssed_3987 NC_009831.1 4879347 4880498 D KEGG: vfi:VFA0208 arylsulfatase regulator (Fe-S oxidoreductase); arylsulfatase 4879347..4880498 Shewanella sediminis HAW-EB3 5613518 YP_001475720.1 CDS Ssed_3988 NC_009831.1 4880602 4881507 D KEGG: vfi:VFA0214 probable transcriptional regulator SyrB; transcriptional regulator SyrB 4880602..4881507 Shewanella sediminis HAW-EB3 5613519 YP_001475721.1 CDS Ssed_3989 NC_009831.1 4881722 4883143 D KEGG: rci:RCIX2356 hypothetical protein; hypothetical protein 4881722..4883143 Shewanella sediminis HAW-EB3 5613520 YP_001475722.1 CDS Ssed_3990 NC_009831.1 4883183 4884736 D KEGG: vfi:VFA0213 sulfatase family protein; sulfatase family protein 4883183..4884736 Shewanella sediminis HAW-EB3 5610460 YP_001475723.1 CDS Ssed_3991 NC_009831.1 4884791 4885429 D KEGG: pin:Ping_0922 hypothetical protein; hypothetical protein 4884791..4885429 Shewanella sediminis HAW-EB3 5610461 YP_001475724.1 CDS Ssed_3992 NC_009831.1 4885570 4886670 D KEGG: ilo:IL0466 RND efflux system membrane fusion protein; RND efflux system membrane fusion protein 4885570..4886670 Shewanella sediminis HAW-EB3 5610462 YP_001475725.1 CDS Ssed_3993 NC_009831.1 4886670 4889747 D KEGG: pha:PSHAb0438 metabolite exporter, AcrB/D/F family; AcrB/AcrD/AcrF family metabolite exporter 4886670..4889747 Shewanella sediminis HAW-EB3 5610463 YP_001475726.1 CDS Ssed_3994 NC_009831.1 4889774 4890889 D KEGG: vpa:VPA0472 long-chain fatty acid transport protein; long-chain fatty acid ABC transporter 4889774..4890889 Shewanella sediminis HAW-EB3 5610206 YP_001475727.1 CDS Ssed_3995 NC_009831.1 4891430 4893394 R hypothetical protein complement(4891430..4893394) Shewanella sediminis HAW-EB3 5610207 YP_001475728.1 CDS Ssed_3996 NC_009831.1 4893419 4893976 R hypothetical protein complement(4893419..4893976) Shewanella sediminis HAW-EB3 5610208 YP_001475729.1 CDS Ssed_3997 NC_009831.1 4894330 4895082 D hypothetical protein 4894330..4895082 Shewanella sediminis HAW-EB3 5610209 YP_001475730.1 CDS Ssed_3998 NC_009831.1 4895747 4896505 R KEGG: son:SO3627 transcriptional regulator, TetR family; hypothetical protein complement(4895747..4896505) Shewanella sediminis HAW-EB3 5611071 YP_001475731.1 CDS Ssed_3999 NC_009831.1 4896767 4897369 D KEGG: ecv:APECO1_3374 disulfide isomerase; disulfide isomerase 4896767..4897369 Shewanella sediminis HAW-EB3 5611072 YP_001475732.1 CDS Ssed_4000 NC_009831.1 4897378 4898016 D KEGG: son:SO3870 disulfide bond formation protein; disulfide bond formation protein 4897378..4898016 Shewanella sediminis HAW-EB3 5611073 YP_001475733.1 CDS Ssed_4001 NC_009831.1 4898273 4900048 D KEGG: son:SO3872 arylsulfate sulfotransferase; arylsulfate sulfotransferase 4898273..4900048 Shewanella sediminis HAW-EB3 5611074 YP_001475734.1 CDS Ssed_4002 NC_009831.1 4900105 4900887 D KEGG: shw:Sputw3181_0117 hypothetical protein; hypothetical protein 4900105..4900887 Shewanella sediminis HAW-EB3 5611148 YP_001475735.1 CDS Ssed_4003 NC_009831.1 4901524 4901652 D KEGG: slo:Shew_3247 hypothetical protein; hypothetical protein 4901524..4901652 Shewanella sediminis HAW-EB3 5609739 YP_001475736.1 CDS Ssed_4004 NC_009831.1 4901816 4902427 R KEGG: slo:Shew_3248 hypothetical protein; hypothetical protein complement(4901816..4902427) Shewanella sediminis HAW-EB3 5611150 YP_001475737.1 CDS Ssed_4005 NC_009831.1 4902667 4904304 D KEGG: slo:Shew_3249 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4902667..4904304 Shewanella sediminis HAW-EB3 5610427 YP_001475738.1 CDS Ssed_4006 NC_009831.1 4904336 4905565 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(4904336..4905565) Shewanella sediminis HAW-EB3 5610428 YP_001475739.1 CDS Ssed_4007 NC_009831.1 4905837 4906652 R KEGG: slo:Shew_3251 UBA/ThiF-type NAD/FAD binding protein; UBA/ThiF-type NAD/FAD binding protein complement(4905837..4906652) Shewanella sediminis HAW-EB3 5610429 YP_001475740.1 CDS Ssed_4008 NC_009831.1 4907148 4908212 D KEGG: slo:Shew_3252 porin, gram-negative type; porin 4907148..4908212 Shewanella sediminis HAW-EB3 5610430 YP_001475741.1 CDS Ssed_4009 NC_009831.1 4908815 4909843 D KEGG: slo:Shew_3260 porin, gram-negative type; porin 4908815..4909843 Shewanella sediminis HAW-EB3 5610509 YP_001475742.1 CDS Ssed_4010 NC_009831.1 4909940 4910620 R catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase complement(4909940..4910620) Shewanella sediminis HAW-EB3 5610510 YP_001475743.1 CDS Ssed_4011 NC_009831.1 4910815 4911159 R KEGG: slo:Shew_3262 hypothetical protein; hypothetical protein complement(4910815..4911159) Shewanella sediminis HAW-EB3 5610511 YP_001475744.1 CDS Ssed_4012 NC_009831.1 4911460 4913280 D KEGG: slo:Shew_3263 serine/threonine protein kinase; serine/threonine protein kinase 4911460..4913280 Shewanella sediminis HAW-EB3 5610512 YP_001475745.1 CDS Ssed_4013 NC_009831.1 4913292 4913867 R KEGG: slo:Shew_3264 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein complement(4913292..4913867) Shewanella sediminis HAW-EB3 5611918 YP_001475746.1 CDS Ssed_4014 NC_009831.1 4914165 4914503 D KEGG: shw:Sputw3181_0695 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 4914165..4914503 Shewanella sediminis HAW-EB3 5611919 YP_001475747.1 CDS dipZ NC_009831.1 4914500 4916335 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4914500..4916335 Shewanella sediminis HAW-EB3 5611920 YP_001475748.1 CDS Ssed_4016 NC_009831.1 4916606 4918231 D KEGG: slo:Shew_3267 sodium/hydrogen exchanger; sodium/hydrogen exchanger 4916606..4918231 Shewanella sediminis HAW-EB3 5611921 YP_001475749.1 CDS Ssed_4017 NC_009831.1 4918311 4919381 D KEGG: slo:Shew_3268 hypothetical protein; hypothetical protein 4918311..4919381 Shewanella sediminis HAW-EB3 5612505 YP_001475750.1 CDS Ssed_4018 NC_009831.1 4919430 4922609 D KEGG: slo:Shew_3269 beta-galactosidase; beta-galactosidase 4919430..4922609 Shewanella sediminis HAW-EB3 5612506 YP_001475751.1 CDS Ssed_4019 NC_009831.1 4922690 4924114 D KEGG: slo:Shew_3270 SSS sodium solute transporter superfamily; SSS family solute/sodium (Na+) symporter 4922690..4924114 Shewanella sediminis HAW-EB3 5612507 YP_001475752.1 CDS Ssed_4020 NC_009831.1 4924342 4925508 D KEGG: slo:Shew_3271 galactokinase; galactokinase 4924342..4925508 Shewanella sediminis HAW-EB3 5612508 YP_001475753.1 CDS Ssed_4021 NC_009831.1 4925581 4926600 D KEGG: slo:Shew_3272 aldose 1-epimerase; aldose 1-epimerase 4925581..4926600 Shewanella sediminis HAW-EB3 5610827 YP_001475754.1 CDS Ssed_4022 NC_009831.1 4926658 4927113 R KEGG: shw:Sputw3181_0690 hypothetical protein; hypothetical protein complement(4926658..4927113) Shewanella sediminis HAW-EB3 5610828 YP_001475755.1 CDS Ssed_4023 NC_009831.1 4927590 4928627 R KEGG: shw:Sputw3181_0689 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase complement(4927590..4928627) Shewanella sediminis HAW-EB3 5610829 YP_001475756.1 CDS Ssed_4024 NC_009831.1 4928800 4930662 R KEGG: gme:Gmet_0536 cytochrome c family protein; hypothetical protein complement(4928800..4930662) Shewanella sediminis HAW-EB3 5610830 YP_001475757.1 CDS Ssed_4025 NC_009831.1 4930999 4931694 R KEGG: slo:Shew_0535 single-strand binding protein; single-strand binding protein complement(4930999..4931694) Shewanella sediminis HAW-EB3 5613986 YP_001475758.1 CDS Ssed_4026 NC_009831.1 4931825 4933192 R KEGG: slo:Shew_0534 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4931825..4933192) Shewanella sediminis HAW-EB3 5613987 YP_001475759.1 CDS Ssed_4027 NC_009831.1 4933462 4936299 D KEGG: slo:Shew_0533 excinuclease ABC, A subunit; excinuclease ABC subunit A 4933462..4936299 Shewanella sediminis HAW-EB3 5613988 YP_001475760.1 CDS Ssed_4028 NC_009831.1 4936532 4937593 D KEGG: slo:Shew_0532 peptidase M28; peptidase M28 4936532..4937593 Shewanella sediminis HAW-EB3 5613989 YP_001475761.1 CDS Ssed_4029 NC_009831.1 4937831 4939663 D KEGG: slo:Shew_0531 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 4937831..4939663 Shewanella sediminis HAW-EB3 5610007 YP_001475762.1 CDS Ssed_4030 NC_009831.1 4939986 4940939 D KEGG: pha:PSHAa0139 hypothetical protein; hypothetical protein 4939986..4940939 Shewanella sediminis HAW-EB3 5610008 YP_001475763.1 CDS Ssed_4031 NC_009831.1 4941004 4941546 R KEGG: mmr:Mmar10_0335 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4941004..4941546) Shewanella sediminis HAW-EB3 5610009 YP_001475764.1 CDS Ssed_4032 NC_009831.1 4941739 4942227 D KEGG: bja:blr2331 transcriptional regulatory protein; transcriptional regulator 4941739..4942227 Shewanella sediminis HAW-EB3 5610010 YP_001475765.1 CDS Ssed_4033 NC_009831.1 4942231 4942653 R hypothetical protein complement(4942231..4942653) Shewanella sediminis HAW-EB3 5612707 YP_001475766.1 CDS Ssed_4034 NC_009831.1 4942997 4943404 D KEGG: cps:CPS_4631 hypothetical protein; hypothetical protein 4942997..4943404 Shewanella sediminis HAW-EB3 5612708 YP_001475767.1 CDS Ssed_4035 NC_009831.1 4943828 4944661 D KEGG: slo:Shew_0527 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4943828..4944661 Shewanella sediminis HAW-EB3 5612709 YP_001475768.1 CDS Ssed_4036 NC_009831.1 4944704 4945534 R KEGG: dra:DR_0450 hypothetical protein; hypothetical protein complement(4944704..4945534) Shewanella sediminis HAW-EB3 5612710 YP_001475769.1 CDS Ssed_4037 NC_009831.1 4945596 4945832 R KEGG: slo:Shew_0525 hypothetical protein; hypothetical protein complement(4945596..4945832) Shewanella sediminis HAW-EB3 5610109 YP_001475770.1 CDS Ssed_4038 NC_009831.1 4946073 4946450 R KEGG: slo:Shew_0526 hypothetical protein; hypothetical protein complement(4946073..4946450) Shewanella sediminis HAW-EB3 5610110 YP_001475771.1 CDS metF NC_009831.1 4946849 4947739 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(4946849..4947739) Shewanella sediminis HAW-EB3 5610111 YP_001475772.1 CDS metL NC_009831.1 4948243 4950630 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(4948243..4950630) Shewanella sediminis HAW-EB3 5610112 YP_001475773.1 CDS Ssed_4041 NC_009831.1 4950643 4951803 R KEGG: shn:Shewana3_3614 O-succinylhomoserine (thiol)-lyase; cystathionine gamma-synthase complement(4950643..4951803) Shewanella sediminis HAW-EB3 5614023 YP_001475774.1 CDS Ssed_4042 NC_009831.1 4952037 4952351 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4952037..4952351 Shewanella sediminis HAW-EB3 5614024 YP_001475775.1 CDS Ssed_4043 NC_009831.1 4952473 4953207 D KEGG: sbl:Sbal_3778 protein of unknown function DUF81; hypothetical protein 4952473..4953207 Shewanella sediminis HAW-EB3 5614025 YP_001475776.1 CDS Ssed_4044 NC_009831.1 4953204 4954277 R KEGG: slo:Shew_0517 plasmid transfer protein; plasmid transfer protein complement(4953204..4954277) Shewanella sediminis HAW-EB3 5609868 YP_001475777.1 CDS Ssed_4045 NC_009831.1 4954488 4955429 R KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase, subunit C complement(4954488..4955429) Shewanella sediminis HAW-EB3 5609869 YP_001475778.1 CDS Ssed_4046 NC_009831.1 4955426 4955998 R KEGG: slo:Shew_0607 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(4955426..4955998) Shewanella sediminis HAW-EB3 5609870 YP_001475779.1 CDS Ssed_4047 NC_009831.1 4956011 4958293 R KEGG: slo:Shew_0608 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(4956011..4958293) Shewanella sediminis HAW-EB3 5609871 YP_001475780.1 CDS Ssed_4048 NC_009831.1 4958725 4960185 D KEGG: aba:Acid345_2134 Fe-S protein, radical SAM family; radical SAM protein 4958725..4960185 Shewanella sediminis HAW-EB3 5610096 YP_001475781.1 CDS Ssed_4049 NC_009831.1 4960201 4961157 D KEGG: ana:all2409 hypothetical protein; hypothetical protein 4960201..4961157 Shewanella sediminis HAW-EB3 5610097 YP_001475782.1 CDS Ssed_4050 NC_009831.1 4961154 4961939 D KEGG: stp:Strop_2596 methyltransferase type 11; ubiquinone/menaquinone biosynthesis methyltransferase 4961154..4961939 Shewanella sediminis HAW-EB3 5610098 YP_001475783.1 CDS Ssed_4051 NC_009831.1 4962039 4962377 R KEGG: ppr:PBPRA2631 hypothetical protein; hypothetical protein complement(4962039..4962377) Shewanella sediminis HAW-EB3 5610099 YP_001475784.1 CDS Ssed_4052 NC_009831.1 4962456 4963601 R catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase complement(4962456..4963601) Shewanella sediminis HAW-EB3 5610038 YP_001475785.1 CDS Ssed_4053 NC_009831.1 4963598 4965094 R detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin complement(4963598..4965094) Shewanella sediminis HAW-EB3 5610039 YP_001475786.1 CDS Ssed_4054 NC_009831.1 4965487 4965684 D KEGG: cps:CPS_1698 hypothetical protein; hypothetical protein 4965487..4965684 Shewanella sediminis HAW-EB3 5610040 YP_001475787.1 CDS Ssed_4055 NC_009831.1 4965755 4966339 D KEGG: vco:VC0395_0403 methyltransferase; methyltransferase 4965755..4966339 Shewanella sediminis HAW-EB3 5610041 YP_001475788.1 CDS Ssed_4056 NC_009831.1 4966399 4967298 R KEGG: cps:CPS_4936 substrate-binding transcriptional regulator, LysR family; LysR family substrate binding transcriptional regulator complement(4966399..4967298) Shewanella sediminis HAW-EB3 5609774 YP_001475789.1 CDS Ssed_4057 NC_009831.1 4967543 4968262 D KEGG: shn:Shewana3_3687 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 4967543..4968262 Shewanella sediminis HAW-EB3 5609775 YP_001475790.1 CDS Ssed_4058 NC_009831.1 4968743 4969072 D KEGG: slo:Shew_0516 cytochrome c family protein; cytochrome c family protein 4968743..4969072 Shewanella sediminis HAW-EB3 5609776 YP_001475791.1 CDS Ssed_4059 NC_009831.1 4969287 4970999 D KEGG: slo:Shew_0515 hypothetical protein; hypothetical protein 4969287..4970999 Shewanella sediminis HAW-EB3 5609777 YP_001475792.1 CDS Ssed_4060 NC_009831.1 4971045 4972448 D KEGG: slo:Shew_0514 cytochrome c; cytochrome c 4971045..4972448 Shewanella sediminis HAW-EB3 5610292 YP_001475793.1 CDS Ssed_4061 NC_009831.1 4972744 4973925 D KEGG: slo:Shew_0508 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 4972744..4973925 Shewanella sediminis HAW-EB3 5610293 YP_001475794.1 CDS Ssed_4062 NC_009831.1 4974550 4974903 R KEGG: sdn:Sden_1508 protein of unknown function UPF0153; hypothetical protein complement(4974550..4974903) Shewanella sediminis HAW-EB3 5610294 YP_001475795.1 CDS Ssed_4063 NC_009831.1 4975186 4976289 R KEGG: son:SO4153 N-ethylmaleimide reductase; N-ethylmaleimide reductase complement(4975186..4976289) Shewanella sediminis HAW-EB3 5610295 YP_001475796.1 CDS Ssed_4064 NC_009831.1 4976421 4977335 D KEGG: slo:Shew_0506 transcriptional regulator, LysR family; LysR family transcriptional regulator 4976421..4977335 Shewanella sediminis HAW-EB3 5612895 YP_001475797.1 CDS Ssed_4065 NC_009831.1 4977427 4977885 R KEGG: slo:Shew_0247 hypothetical protein; hypothetical protein complement(4977427..4977885) Shewanella sediminis HAW-EB3 5612896 YP_001475798.1 CDS Ssed_4066 NC_009831.1 4978201 4980042 R KEGG: slo:Shew_0610 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4978201..4980042) Shewanella sediminis HAW-EB3 5612897 YP_001475799.1 CDS Ssed_4067 NC_009831.1 4980256 4980885 D KEGG: slo:Shew_0609 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4980256..4980885 Shewanella sediminis HAW-EB3 5612898 YP_001475800.1 CDS Ssed_4068 NC_009831.1 4981206 4982180 R KEGG: slo:Shew_3341 diguanylate cyclase with GAF sensor; GAF sensor-containing diguanylate cyclase complement(4981206..4982180) Shewanella sediminis HAW-EB3 5610191 YP_001475801.1 CDS Ssed_4069 NC_009831.1 4982465 4983067 R KEGG: sbl:Sbal_3876 two component transcriptional regulator, fis family; two component Fis family transcriptional regulator complement(4982465..4983067) Shewanella sediminis HAW-EB3 5610192 YP_001475802.1 CDS Ssed_4070 NC_009831.1 4983072 4984322 R KEGG: slo:Shew_3343 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4983072..4984322) Shewanella sediminis HAW-EB3 5610193 YP_001475803.1 CDS Ssed_4071 NC_009831.1 4984339 4985124 R KEGG: mxa:MXAN_1009 lipoprotein; hypothetical protein complement(4984339..4985124) Shewanella sediminis HAW-EB3 5610194 YP_001475804.1 CDS Ssed_4072 NC_009831.1 4985215 4987200 D KEGG: slo:Shew_3347 hypothetical protein; hypothetical protein 4985215..4987200 Shewanella sediminis HAW-EB3 5610268 YP_001475805.1 CDS Ssed_4073 NC_009831.1 4987263 4988201 R KEGG: shn:Shewana3_3712 pseudouridine synthase; pseudouridine synthase complement(4987263..4988201) Shewanella sediminis HAW-EB3 5610269 YP_001475806.1 CDS Ssed_4074 NC_009831.1 4988256 4988831 R KEGG: shm:Shewmr7_0417 ATP-dependent protease La (LON) domain protein; ATP-dependent protease La complement(4988256..4988831) Shewanella sediminis HAW-EB3 5610270 YP_001475807.1 CDS Ssed_4075 NC_009831.1 4989014 4990069 R KEGG: slo:Shew_3350 hypothetical protein; hypothetical protein complement(4989014..4990069) Shewanella sediminis HAW-EB3 5610271 YP_001475808.1 CDS Ssed_4076 NC_009831.1 4990174 4990608 D hypothetical protein 4990174..4990608 Shewanella sediminis HAW-EB3 5610886 YP_001475809.1 CDS Ssed_4077 NC_009831.1 4990730 4991191 D KEGG: slo:Shew_3353 conserved hypothetical protein 22; hypothetical protein 4990730..4991191 Shewanella sediminis HAW-EB3 5610887 YP_001475810.1 CDS Ssed_4078 NC_009831.1 4991233 4991769 D KEGG: sfr:Sfri_3576 hypothetical protein; hypothetical protein 4991233..4991769 Shewanella sediminis HAW-EB3 5610888 YP_001475811.1 CDS Ssed_4079 NC_009831.1 4992251 4992715 D KEGG: aae:aq_1599 hypothetical protein; hypothetical protein 4992251..4992715 Shewanella sediminis HAW-EB3 5609932 YP_001475812.1 CDS Ssed_4080 NC_009831.1 4992904 4993791 R KEGG: sfr:Sfri_3467 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(4992904..4993791) Shewanella sediminis HAW-EB3 5609933 YP_001475813.1 CDS Ssed_4081 NC_009831.1 4994147 4997395 R KEGG: slo:Shew_3356 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein complement(4994147..4997395) Shewanella sediminis HAW-EB3 5609934 YP_001475814.1 CDS Ssed_4082 NC_009831.1 4997444 4998811 R KEGG: slo:Shew_3357 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(4997444..4998811) Shewanella sediminis HAW-EB3 5609935 YP_001475815.1 CDS Ssed_4083 NC_009831.1 4998830 5000161 R KEGG: slo:Shew_3358 outer membrane efflux family protein; outer membrane efflux family protein complement(4998830..5000161) Shewanella sediminis HAW-EB3 5613777 YP_001475816.1 CDS Ssed_4084 NC_009831.1 5000376 5000852 R KEGG: slo:Shew_3359 hypothetical protein; hypothetical protein complement(5000376..5000852) Shewanella sediminis HAW-EB3 5613778 YP_001475817.1 CDS Ssed_4085 NC_009831.1 5000984 5001187 R KEGG: she:Shewmr4_0514 hypothetical protein; hypothetical protein complement(5000984..5001187) Shewanella sediminis HAW-EB3 5613779 YP_001475818.1 CDS Ssed_4086 NC_009831.1 5001310 5001675 R KEGG: shn:Shewana3_0513 hypothetical protein; hypothetical protein complement(5001310..5001675) Shewanella sediminis HAW-EB3 5613780 YP_001475819.1 CDS Ssed_4087 NC_009831.1 5002058 5002486 D KEGG: shw:Sputw3181_0594 class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 5002058..5002486 Shewanella sediminis HAW-EB3 5613657 YP_001475820.1 CDS Ssed_4088 NC_009831.1 5002722 5003177 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 5002722..5003177 Shewanella sediminis HAW-EB3 5613658 YP_001475821.1 CDS Ssed_4089 NC_009831.1 5003270 5003806 D KEGG: sdy:SDY_3432 acetylCoA carboxylase, BccP subunit; acetylCoA carboxylase, BccP subunit 5003270..5003806 Shewanella sediminis HAW-EB3 5613659 YP_001475822.1 CDS Ssed_4090 NC_009831.1 5003935 5005305 D KEGG: ilo:IL2286 acetyl CoA carboxylase, biotin carboxylase subunit; acetyl CoA carboxylase, biotin carboxylase subunit 5003935..5005305 Shewanella sediminis HAW-EB3 5613660 YP_001475823.1 CDS Ssed_4091 NC_009831.1 5005338 5008520 R KEGG: slo:Shew_3366 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(5005338..5008520) Shewanella sediminis HAW-EB3 5610609 YP_001475824.1 CDS Ssed_4092 NC_009831.1 5008594 5009205 R KEGG: saz:Sama_3100 hypothetical protein; hypothetical protein complement(5008594..5009205) Shewanella sediminis HAW-EB3 5610610 YP_001475825.1 CDS Ssed_4093 NC_009831.1 5009532 5009780 R KEGG: slo:Shew_3369 hypothetical protein; hypothetical protein complement(5009532..5009780) Shewanella sediminis HAW-EB3 5610611 YP_001475826.1 CDS Ssed_4094 NC_009831.1 5010117 5010602 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 5010117..5010602 Shewanella sediminis HAW-EB3 5610612 YP_001475827.1 CDS Ssed_4095 NC_009831.1 5010839 5011882 D KEGG: slo:Shew_3372 arginase/agmatinase/formiminoglutamase; arginase/agmatinase/formiminoglutamase 5010839..5011882 Shewanella sediminis HAW-EB3 5610472 YP_001475828.1 CDS Ssed_4096 NC_009831.1 5012128 5012883 D KEGG: slo:Shew_3373 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 5012128..5012883 Shewanella sediminis HAW-EB3 5610473 YP_001475829.1 CDS Ssed_4097 NC_009831.1 5012895 5013518 D KEGG: slo:Shew_3374 protein of unknown function DUF1243; hypothetical protein 5012895..5013518 Shewanella sediminis HAW-EB3 5610474 YP_001475830.1 CDS Ssed_4098 NC_009831.1 5013515 5015164 D KEGG: slo:Shew_3375 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase 5013515..5015164 Shewanella sediminis HAW-EB3 5610475 YP_001475831.1 CDS Ssed_4099 NC_009831.1 5015224 5015460 D KEGG: slo:Shew_3376 twin-arginine translocation protein, TatA/E family subunit; twin arginine-targeting protein translocase 5015224..5015460 Shewanella sediminis HAW-EB3 5612169 YP_001475832.1 CDS Ssed_4100 NC_009831.1 5015467 5015865 D KEGG: slo:Shew_3377 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein subunit TatB 5015467..5015865 Shewanella sediminis HAW-EB3 5612170 YP_001475833.1 CDS Ssed_4101 NC_009831.1 5015869 5016636 D KEGG: slo:Shew_3378 sec-independent protein translocase, TatC subunit; sec-independent protein translocase, TatC subunit 5015869..5016636 Shewanella sediminis HAW-EB3 5612171 YP_001475834.1 CDS Ssed_4102 NC_009831.1 5016696 5017235 D KEGG: sbl:Sbal_3901 hypothetical protein; hypothetical protein 5016696..5017235 Shewanella sediminis HAW-EB3 5612172 YP_001475835.1 CDS Ssed_4103 NC_009831.1 5017235 5018029 D KEGG: shn:Shewana3_3732 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 5017235..5018029 Shewanella sediminis HAW-EB3 5613133 YP_001475836.1 CDS Ssed_4104 NC_009831.1 5018065 5019897 D KEGG: slo:Shew_3381 diguanylate cyclase; diguanylate cyclase 5018065..5019897 Shewanella sediminis HAW-EB3 5613134 YP_001475837.1 CDS Ssed_4105 NC_009831.1 5020015 5021031 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 5020015..5021031 Shewanella sediminis HAW-EB3 5613135 YP_001475838.1 CDS Ssed_4106 NC_009831.1 5021328 5021867 D KEGG: shw:Sputw3181_0509 hypothetical protein; hypothetical protein 5021328..5021867 Shewanella sediminis HAW-EB3 5613136 YP_001475839.1 CDS Ssed_4107 NC_009831.1 5021924 5024908 R KEGG: cps:CPS_4791 oar protein; oar protein complement(5021924..5024908) Shewanella sediminis HAW-EB3 5612078 YP_001475840.1 CDS Ssed_4108 NC_009831.1 5025274 5026191 R KEGG: slo:Shew_0340 Ppx/GppA phosphatase; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase complement(5025274..5026191) Shewanella sediminis HAW-EB3 5612079 YP_001475841.1 CDS Ssed_4109 NC_009831.1 5026203 5027510 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(5026203..5027510) Shewanella sediminis HAW-EB3 5612080 YP_001475842.1 CDS Ssed_4110 NC_009831.1 5027685 5028011 D KEGG: shn:Shewana3_0409 thioredoxin; thioredoxin 5027685..5028011 Shewanella sediminis HAW-EB3 5612081 YP_001475843.1 CDS rho NC_009831.1 5028267 5029532 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5028267..5029532 Shewanella sediminis HAW-EB3 5609767 YP_001475844.1 CDS Ssed_4112 NC_009831.1 5029811 5030713 R KEGG: slo:Shew_0336 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5029811..5030713) Shewanella sediminis HAW-EB3 5609768 YP_001475845.1 CDS frdB NC_009831.1 5030827 5031558 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(5030827..5031558) Shewanella sediminis HAW-EB3 5609769 YP_001475846.1 CDS Ssed_4114 NC_009831.1 5031555 5033579 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(5031555..5033579) Shewanella sediminis HAW-EB3 5610239 YP_001475847.1 CDS Ssed_4115 NC_009831.1 5033691 5034359 R KEGG: slo:Shew_0333 fumarate reductase respiratory complex, transmembrane subunit; fumarate reductase respiratory complex, transmembrane subunit complement(5033691..5034359) Shewanella sediminis HAW-EB3 5610240 YP_001475848.1 CDS Ssed_4116 NC_009831.1 5034518 5035243 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(5034518..5035243) Shewanella sediminis HAW-EB3 5610241 YP_001475849.1 CDS prmA NC_009831.1 5035768 5036649 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5035768..5036649 Shewanella sediminis HAW-EB3 5610242 YP_001475850.1 CDS Ssed_4118 NC_009831.1 5036801 5037769 D KEGG: slo:Shew_0330 TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein 5036801..5037769 Shewanella sediminis HAW-EB3 5611432 YP_001475851.1 CDS fis NC_009831.1 5037788 5038093 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5037788..5038093 Shewanella sediminis HAW-EB3 5611433 YP_001475852.1 CDS Ssed_4120 NC_009831.1 5038804 5040273 R KEGG: dsy:DSY2839 tetrachloroethene dehalogenase; hypothetical protein complement(5038804..5040273) Shewanella sediminis HAW-EB3 5611434 YP_001475853.1 CDS Ssed_4121 NC_009831.1 5040325 5040954 R KEGG: tcx:Tcr_1026 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type complement(5040325..5040954) Shewanella sediminis HAW-EB3 5611435 YP_001475854.1 CDS Ssed_4122 NC_009831.1 5041002 5041511 R KEGG: sfr:Sfri_2910 cytochrome c, class II; hypothetical protein complement(5041002..5041511) Shewanella sediminis HAW-EB3 5613453 YP_001475855.1 CDS Ssed_4123 NC_009831.1 5041796 5042365 D KEGG: dar:Daro_1210 regulatory protein, TetR; hypothetical protein 5041796..5042365 Shewanella sediminis HAW-EB3 5613454 YP_001475856.1 CDS Ssed_4124 NC_009831.1 5042477 5043187 D KEGG: slo:Shew_0328 protein of unknown function DUF542, ScdA domain protein; hypothetical protein 5042477..5043187 Shewanella sediminis HAW-EB3 5613455 YP_001475857.1 CDS Ssed_4125 NC_009831.1 5043253 5043831 R KEGG: son:SO4304 urease accessory protein UreJ; urease accessory protein UreJ complement(5043253..5043831) Shewanella sediminis HAW-EB3 5613456 YP_001475858.1 CDS Ssed_4126 NC_009831.1 5043931 5044653 R KEGG: slo:Shew_0326 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(5043931..5044653) Shewanella sediminis HAW-EB3 5610841 YP_001475859.1 CDS Ssed_4127 NC_009831.1 5044653 5045558 R KEGG: slo:Shew_0325 tyrosine recombinase XerC; tyrosine recombinase XerC complement(5044653..5045558) Shewanella sediminis HAW-EB3 5610842 YP_001475860.1 CDS Ssed_4128 NC_009831.1 5045721 5046359 R KEGG: slo:Shew_0324 protein of unknown function DUF484; hypothetical protein complement(5045721..5046359) Shewanella sediminis HAW-EB3 5610843 YP_001475861.1 CDS dapF NC_009831.1 5046356 5047198 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(5046356..5047198) Shewanella sediminis HAW-EB3 5610844 YP_001475862.1 CDS Ssed_4130 NC_009831.1 5047285 5048529 R KEGG: spc:Sputcn32_3583 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(5047285..5048529) Shewanella sediminis HAW-EB3 5613129 YP_001475863.1 CDS Ssed_4131 NC_009831.1 5048934 5049263 D KEGG: shw:Sputw3181_3724 frataxin family protein; frataxin family protein 5048934..5049263 Shewanella sediminis HAW-EB3 5613130 YP_001475864.1 CDS cyaA NC_009831.1 5049602 5052025 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(5049602..5052025) Shewanella sediminis HAW-EB3 5613131 YP_001475865.1 CDS hemC NC_009831.1 5052227 5053156 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 5052227..5053156 Shewanella sediminis HAW-EB3 5613132 YP_001475866.1 CDS Ssed_4134 NC_009831.1 5053183 5053917 D KEGG: shw:Sputw3181_3727 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 5053183..5053917 Shewanella sediminis HAW-EB3 5613190 YP_001475867.1 CDS Ssed_4135 NC_009831.1 5054032 5055183 D KEGG: slo:Shew_0316 protein of unknown function DUF513, HemX; hypothetical protein 5054032..5055183 Shewanella sediminis HAW-EB3 5613191 YP_001475868.1 CDS Ssed_4136 NC_009831.1 5055180 5056349 D KEGG: slo:Shew_0315 HemY domain protein; HemY domain-containing protein 5055180..5056349 Shewanella sediminis HAW-EB3 5613192 YP_001475869.1 CDS Ssed_4137 NC_009831.1 5056631 5061430 D KEGG: slo:Shew_0314 outer membrane adhesin like proteiin; outer membrane adhesin-like protein 5056631..5061430 Shewanella sediminis HAW-EB3 5613193 YP_001475870.1 CDS Ssed_4138 NC_009831.1 5061859 5071407 D KEGG: pub:SAR11_0932 hypothetical protein; hypothetical protein 5061859..5071407 Shewanella sediminis HAW-EB3 5613063 YP_001475871.1 CDS Ssed_4139 NC_009831.1 5071740 5084108 D KEGG: slo:Shew_0313 outer membrane adhesin like proteiin; outer membrane adhesin-like protein 5071740..5084108 Shewanella sediminis HAW-EB3 5613064 YP_001475872.1 CDS Ssed_4140 NC_009831.1 5084217 5086397 D KEGG: slo:Shew_0312 ABC transporter-related protein; ABC transporter-like protein 5084217..5086397 Shewanella sediminis HAW-EB3 5613065 YP_001475873.1 CDS Ssed_4141 NC_009831.1 5086390 5087772 D KEGG: slo:Shew_0311 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein 5086390..5087772 Shewanella sediminis HAW-EB3 5613066 YP_001475874.1 CDS Ssed_4142 NC_009831.1 5087802 5089220 D KEGG: slo:Shew_0310 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 5087802..5089220 Shewanella sediminis HAW-EB3 5612946 YP_001475875.1 CDS Ssed_4143 NC_009831.1 5089220 5089825 D KEGG: slo:Shew_0309 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 5089220..5089825 Shewanella sediminis HAW-EB3 5612947 YP_001475876.1 CDS Ssed_4144 NC_009831.1 5089844 5090554 D KEGG: slo:Shew_0308 hypothetical protein; hypothetical protein 5089844..5090554 Shewanella sediminis HAW-EB3 5612948 YP_001475877.1 CDS Ssed_4145 NC_009831.1 5090563 5092485 D KEGG: slo:Shew_0307 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 5090563..5092485 Shewanella sediminis HAW-EB3 5612949 YP_001475878.1 CDS Ssed_4146 NC_009831.1 5094176 5096803 D KEGG: slo:Shew_0306 diguanylate cyclase/phosphodiesterase with GAF sensor; GAF sensor-containing diguanylate cyclase/phosphodiesterase 5094176..5096803 Shewanella sediminis HAW-EB3 5609595 YP_001475879.1 CDS Ssed_4147 NC_009831.1 5096880 5098892 R KEGG: slo:Shew_0305 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep complement(5096880..5098892) Shewanella sediminis HAW-EB3 5612725 YP_001475880.1 CDS Ssed_4148 NC_009831.1 5099114 5099755 D KEGG: shn:Shewana3_0373 transcriptional regulator, TetR family; TetR family transcriptional regulator 5099114..5099755 Shewanella sediminis HAW-EB3 5612726 YP_001475881.1 CDS Ssed_4149 NC_009831.1 5099752 5100870 D KEGG: shn:Shewana3_0372 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 5099752..5100870 Shewanella sediminis HAW-EB3 5612425 YP_001475882.1 CDS Ssed_4150 NC_009831.1 5100883 5103966 D KEGG: shn:Shewana3_0371 acriflavin resistance protein; acriflavin resistance protein 5100883..5103966 Shewanella sediminis HAW-EB3 5612426 YP_001475883.1 CDS Ssed_4151 NC_009831.1 5104119 5104379 D KEGG: slo:Shew_0304 protein of unknown function DUF526; hypothetical protein 5104119..5104379 Shewanella sediminis HAW-EB3 5612427 YP_001475884.1 CDS Ssed_4152 NC_009831.1 5104445 5105284 R KEGG: mmr:Mmar10_2310 protein of unknown function DUF417; hypothetical protein complement(5104445..5105284) Shewanella sediminis HAW-EB3 5612428 YP_001475885.1 CDS Ssed_4153 NC_009831.1 5105490 5106842 D KEGG: son:SO4334 inner membrane protein; hypothetical protein 5105490..5106842 Shewanella sediminis HAW-EB3 5612570 YP_001475886.1 CDS Ssed_4154 NC_009831.1 5107052 5107822 D KEGG: shm:Shewmr7_3657 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 5107052..5107822 Shewanella sediminis HAW-EB3 5612571 YP_001475887.1 CDS Ssed_4155 NC_009831.1 5107924 5108403 D KEGG: slo:Shew_0301 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5107924..5108403 Shewanella sediminis HAW-EB3 5612572 YP_001475888.1 CDS Ssed_4156 NC_009831.1 5108743 5110101 D KEGG: slo:Shew_0300 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 5108743..5110101 Shewanella sediminis HAW-EB3 5612573 YP_001475889.1 CDS Ssed_4157 NC_009831.1 5110336 5112339 D KEGG: sdn:Sden_0470 TonB-dependent copper receptor; TonB-dependent copper receptor 5110336..5112339 Shewanella sediminis HAW-EB3 5612371 YP_001475890.1 CDS Ssed_4158 NC_009831.1 5112500 5113936 R KEGG: shn:Shewana3_0537 aspartate kinase; aspartate kinase complement(5112500..5113936) Shewanella sediminis HAW-EB3 5612372 YP_001475891.1 CDS Ssed_4159 NC_009831.1 5114157 5114594 D KEGG: tva:TVAG_470020 ankyrin repeat protein; ankyrin repeat-containing protein 5114157..5114594 Shewanella sediminis HAW-EB3 5612373 YP_001475892.1 CDS Ssed_4160 NC_009831.1 5114710 5115852 R KEGG: slo:Shew_0294 alanine--glyoxylate transaminase; serine--pyruvate transaminase complement(5114710..5115852) Shewanella sediminis HAW-EB3 5612374 YP_001475893.1 CDS Ssed_4161 NC_009831.1 5116129 5117679 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(5116129..5117679) Shewanella sediminis HAW-EB3 5612414 YP_001475894.1 CDS Ssed_4162 NC_009831.1 5117681 5119531 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(5117681..5119531) Shewanella sediminis HAW-EB3 5612415 YP_001475895.1 CDS Ssed_4163 NC_009831.1 5119700 5120623 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(5119700..5120623) Shewanella sediminis HAW-EB3 5612416 YP_001475896.1 CDS Ssed_4164 NC_009831.1 5120708 5120968 R KEGG: slo:Shew_0290 acetolactate synthase small subunit; acetolactate synthase small subunit complement(5120708..5120968) Shewanella sediminis HAW-EB3 5612417 YP_001475897.1 CDS Ssed_4165 NC_009831.1 5121039 5122712 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit complement(5121039..5122712) Shewanella sediminis HAW-EB3 5612346 YP_001475898.1 CDS Ssed_4166 NC_009831.1 5123306 5124787 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(5123306..5124787) Shewanella sediminis HAW-EB3 5612347 YP_001475899.1 CDS Ssed_4167 NC_009831.1 5125011 5125883 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 5125011..5125883 Shewanella sediminis HAW-EB3 5612348 YP_001475900.1 CDS Ssed_4168 NC_009831.1 5125970 5126797 D KEGG: slo:Shew_0286 extracellular solute-binding protein, family 3; extracellular solute-binding protein 5125970..5126797 Shewanella sediminis HAW-EB3 5612349 YP_001475901.1 CDS Ssed_4169 NC_009831.1 5126930 5127733 D KEGG: slo:Shew_0285 diguanylate cyclase; diguanylate cyclase 5126930..5127733 Shewanella sediminis HAW-EB3 5612327 YP_001475902.1 CDS Ssed_4170 NC_009831.1 5127799 5128590 R KEGG: pha:PSHAa0645 serine acetyltransferase; Serine O-acetyltransferase complement(5127799..5128590) Shewanella sediminis HAW-EB3 5612328 YP_001475903.1 CDS Ssed_4171 NC_009831.1 5129187 5130710 D KEGG: slo:Shew_0283 Mg chelatase, subunit ChlI; Mg chelatase subunit ChlI 5129187..5130710 Shewanella sediminis HAW-EB3 5612329 YP_001475904.1 CDS Ssed_4172 NC_009831.1 5130753 5131799 R KEGG: shn:Shewana3_0349 periplasmic sugar-binding protein; periplasmic sugar-binding protein complement(5130753..5131799) Shewanella sediminis HAW-EB3 5612330 YP_001475905.1 CDS Ssed_4173 NC_009831.1 5132049 5132957 D KEGG: slo:Shew_0282 phospholipid/glycerol acyltransferase; acyltransferase 5132049..5132957 Shewanella sediminis HAW-EB3 5612291 YP_001475906.1 CDS Ssed_4174 NC_009831.1 5132962 5133882 D KEGG: she:Shewmr4_3626 phospholipid/glycerol acyltransferase; acyltransferase 5132962..5133882 Shewanella sediminis HAW-EB3 5612292 YP_001475907.1 CDS Ssed_4175 NC_009831.1 5134347 5135072 D KEGG: shm:Shewmr7_0316 transcriptional regulator, GntR family; GntR family transcriptional regulator 5134347..5135072 Shewanella sediminis HAW-EB3 5612293 YP_001475908.1 CDS Ssed_4176 NC_009831.1 5135224 5136315 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(5135224..5136315) Shewanella sediminis HAW-EB3 5612294 YP_001475909.1 CDS Ssed_4177 NC_009831.1 5136484 5137248 R KEGG: son:SO3627 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5136484..5137248) Shewanella sediminis HAW-EB3 5612323 YP_001475910.1 CDS Ssed_4178 NC_009831.1 5137436 5138938 D KEGG: son:SO3624 flavocytochrome c flavin subunit; flavocytochrome c flavin subunit 5137436..5138938 Shewanella sediminis HAW-EB3 5612324 YP_001475911.1 CDS Ssed_4179 NC_009831.1 5138949 5139311 D KEGG: son:SO3623 tetraheme cytochrome c; tetraheme cytochrome c 5138949..5139311 Shewanella sediminis HAW-EB3 5612325 YP_001475912.1 CDS Ssed_4180 NC_009831.1 5139404 5140144 D KEGG: son:SO3622 hypothetical protein; hypothetical protein 5139404..5140144 Shewanella sediminis HAW-EB3 5612326 YP_001475913.1 CDS Ssed_4181 NC_009831.1 5140203 5140670 D KEGG: son:SO3621 hypothetical protein; hypothetical protein 5140203..5140670 Shewanella sediminis HAW-EB3 5612262 YP_001475914.1 CDS Ssed_4182 NC_009831.1 5140736 5141863 D KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 5140736..5141863 Shewanella sediminis HAW-EB3 5612263 YP_001475915.1 CDS Ssed_4183 NC_009831.1 5142057 5142848 R KEGG: slo:Shew_0277 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5142057..5142848) Shewanella sediminis HAW-EB3 5612264 YP_001475916.1 CDS Ssed_4184 NC_009831.1 5143202 5144713 D KEGG: slo:Shew_0276 flavocytochrome c; flavocytochrome c 5143202..5144713 Shewanella sediminis HAW-EB3 5612165 YP_001475917.1 CDS Ssed_4185 NC_009831.1 5144725 5145093 D KEGG: slo:Shew_0275 tetraheme cytochrome c; tetraheme cytochrome c 5144725..5145093 Shewanella sediminis HAW-EB3 5612166 YP_001475918.1 CDS Ssed_4186 NC_009831.1 5145143 5146276 D KEGG: slo:Shew_0274 hypothetical protein; hypothetical protein 5145143..5146276 Shewanella sediminis HAW-EB3 5612167 YP_001475919.1 CDS Ssed_4187 NC_009831.1 5146487 5147560 D KEGG: slo:Shew_0273 hypothetical protein; hypothetical protein 5146487..5147560 Shewanella sediminis HAW-EB3 5612168 YP_001475920.1 CDS Ssed_4188 NC_009831.1 5147769 5148512 D KEGG: slo:Shew_0272 cupin 2, conserved barrel domain protein; cupin 5147769..5148512 Shewanella sediminis HAW-EB3 5612157 YP_001475921.1 CDS Ssed_4189 NC_009831.1 5148945 5149571 D KEGG: slo:Shew_0270 hypothetical protein; hypothetical protein 5148945..5149571 Shewanella sediminis HAW-EB3 5612158 YP_001475922.1 CDS Ssed_4190 NC_009831.1 5149652 5151145 R KEGG: sbl:Sbal_4057 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(5149652..5151145) Shewanella sediminis HAW-EB3 5612159 YP_001475923.1 CDS Ssed_4191 NC_009831.1 5151325 5151528 D KEGG: slo:Shew_0267 protein of unknown function DUF904; hypothetical protein 5151325..5151528 Shewanella sediminis HAW-EB3 5612160 YP_001475924.1 CDS Ssed_4192 NC_009831.1 5151555 5151767 R KEGG: shw:Sputw3181_3796 protein of unknown function DUF1107; hypothetical protein complement(5151555..5151767) Shewanella sediminis HAW-EB3 5612114 YP_001475925.1 CDS Ssed_4193 NC_009831.1 5152460 5153071 R KEGG: slo:Shew_0265 DsbA oxidoreductase; DsbA oxidoreductase complement(5152460..5153071) Shewanella sediminis HAW-EB3 5612115 YP_001475926.1 CDS Ssed_4194 NC_009831.1 5153209 5154213 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(5153209..5154213) Shewanella sediminis HAW-EB3 5612116 YP_001475927.1 CDS Ssed_4195 NC_009831.1 5154210 5154503 R KEGG: slo:Shew_0263 hypothetical protein; hypothetical protein complement(5154210..5154503) Shewanella sediminis HAW-EB3 5612117 YP_001475928.1 CDS Ssed_4196 NC_009831.1 5154547 5154855 R KEGG: slo:Shew_0261 hypothetical protein; hypothetical protein complement(5154547..5154855) Shewanella sediminis HAW-EB3 5611942 YP_001475929.1 CDS Ssed_4197 NC_009831.1 5154970 5155845 R KEGG: slo:Shew_0260 hypothetical protein; hypothetical protein complement(5154970..5155845) Shewanella sediminis HAW-EB3 5611943 YP_001475930.1 CDS Ssed_4198 NC_009831.1 5156174 5156533 D KEGG: sbl:Sbal_4066 DsrE family protein; DsrE family protein 5156174..5156533 Shewanella sediminis HAW-EB3 5611944 YP_001475931.1 CDS Ssed_4199 NC_009831.1 5156798 5157190 D KEGG: slo:Shew_0259 hypothetical protein; hypothetical protein 5156798..5157190 Shewanella sediminis HAW-EB3 5611945 YP_001475932.1 CDS Ssed_4200 NC_009831.1 5157376 5158266 D KEGG: slo:Shew_0258 hypothetical protein; hypothetical protein 5157376..5158266 Shewanella sediminis HAW-EB3 5611930 YP_001475933.1 CDS Ssed_4201 NC_009831.1 5158296 5158901 R KEGG: ppr:PBPRB0492 hypothetical protein; hypothetical protein complement(5158296..5158901) Shewanella sediminis HAW-EB3 5611931 YP_001475934.1 CDS Ssed_4202 NC_009831.1 5159106 5160173 D KEGG: ppr:PBPRB0491 hypothetical secretion protein; hypothetical protein 5159106..5160173 Shewanella sediminis HAW-EB3 5611932 YP_001475935.1 CDS Ssed_4203 NC_009831.1 5160177 5161703 D KEGG: ppr:PBPRB0490 hypothetical protein; hypothetical protein 5160177..5161703 Shewanella sediminis HAW-EB3 5611933 YP_001475936.1 CDS Ssed_4204 NC_009831.1 5161997 5164063 D KEGG: slo:Shew_0257 peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 5161997..5164063 Shewanella sediminis HAW-EB3 5611881 YP_001475937.1 CDS Ssed_4205 NC_009831.1 5164209 5164775 D KEGG: slo:Shew_0256 hypothetical protein; hypothetical protein 5164209..5164775 Shewanella sediminis HAW-EB3 5611882 YP_001475938.1 CDS Ssed_4206 NC_009831.1 5164940 5166439 R KEGG: ecp:ECP_2702 hypothetical protein; hypothetical protein complement(5164940..5166439) Shewanella sediminis HAW-EB3 5611883 YP_001475939.1 CDS Ssed_4207 NC_009831.1 5166932 5167522 R KEGG: slo:Shew_0246 hypothetical protein; hypothetical protein complement(5166932..5167522) Shewanella sediminis HAW-EB3 5611884 YP_001475940.1 CDS Ssed_4208 NC_009831.1 5167982 5171020 R KEGG: slo:Shew_0245 molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding region complement(5167982..5171020) Shewanella sediminis HAW-EB3 5611914 YP_001475941.1 CDS Ssed_4209 NC_009831.1 5171030 5171725 R KEGG: slo:Shew_0244 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5171030..5171725) Shewanella sediminis HAW-EB3 5611915 YP_001475942.1 CDS Ssed_4210 NC_009831.1 5172261 5173268 D KEGG: slo:Shew_0243 transcriptional regulator, LysR family; LysR family transcriptional regulator 5172261..5173268 Shewanella sediminis HAW-EB3 5611916 YP_001475943.1 CDS Ssed_4211 NC_009831.1 5173529 5175745 D KEGG: slo:Shew_0242 molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding region 5173529..5175745 Shewanella sediminis HAW-EB3 5611917 YP_001475944.1 CDS Ssed_4212 NC_009831.1 5175756 5176301 D KEGG: slo:Shew_0241 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 5175756..5176301 Shewanella sediminis HAW-EB3 5611859 YP_001475945.1 CDS Ssed_4213 NC_009831.1 5176301 5176888 D KEGG: slo:Shew_0240 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 5176301..5176888 Shewanella sediminis HAW-EB3 5611860 YP_001475946.1 CDS Ssed_4214 NC_009831.1 5177032 5177997 D KEGG: slo:Shew_0239 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 5177032..5177997 Shewanella sediminis HAW-EB3 5611861 YP_001475947.1 CDS Ssed_4215 NC_009831.1 5178164 5179222 D KEGG: slo:Shew_0238 porin, gram-negative type; porin 5178164..5179222 Shewanella sediminis HAW-EB3 5611862 YP_001475948.1 CDS Ssed_4216 NC_009831.1 5179280 5181223 D KEGG: slo:Shew_0237 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5179280..5181223 Shewanella sediminis HAW-EB3 5611789 YP_001475949.1 CDS Ssed_4217 NC_009831.1 5181357 5181701 R KEGG: slo:Shew_0234 protein of unknown function DUF1232; hypothetical protein complement(5181357..5181701) Shewanella sediminis HAW-EB3 5611790 YP_001475950.1 CDS Ssed_4218 NC_009831.1 5181775 5184099 R KEGG: slo:Shew_0233 radical SAM N-terminal domain protein; hypothetical protein complement(5181775..5184099) Shewanella sediminis HAW-EB3 5611791 YP_001475951.1 CDS Ssed_4219 NC_009831.1 5184312 5184713 R KEGG: slo:Shew_0232 hypothetical protein; hypothetical protein complement(5184312..5184713) Shewanella sediminis HAW-EB3 5611497 YP_001475952.1 CDS Ssed_4220 NC_009831.1 5185226 5186446 D KEGG: slo:Shew_0231 protein of unknown function DUF1212; hypothetical protein 5185226..5186446 Shewanella sediminis HAW-EB3 5611498 YP_001475953.1 CDS Ssed_4221 NC_009831.1 5186743 5188296 D KEGG: slo:Shew_0230 hypothetical protein; hypothetical protein 5186743..5188296 Shewanella sediminis HAW-EB3 5611499 YP_001475954.1 CDS Ssed_4222 NC_009831.1 5188354 5189157 D KEGG: slo:Shew_0229 extracellular solute-binding protein, family 3; extracellular solute-binding protein 5188354..5189157 Shewanella sediminis HAW-EB3 5611500 YP_001475955.1 CDS Ssed_4223 NC_009831.1 5189255 5189968 D KEGG: ilo:IL1531 short chain dehydrogenase/reductase family protein; short chain dehydrogenase/reductase family protein 5189255..5189968 Shewanella sediminis HAW-EB3 5611634 YP_001475956.1 CDS Ssed_4224 NC_009831.1 5189849 5190250 R KEGG: aha:AHA_4062 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; hypothetical protein complement(5189849..5190250) Shewanella sediminis HAW-EB3 5611635 YP_001475957.1 CDS Ssed_4225 NC_009831.1 5190527 5190853 R KEGG: sfr:Sfri_3425 small multidrug resistance protein; small multidrug resistance protein complement(5190527..5190853) Shewanella sediminis HAW-EB3 5611636 YP_001475958.1 CDS Ssed_4226 NC_009831.1 5191179 5192018 R KEGG: sfr:Sfri_3426 carboxylesterase; carboxylesterase complement(5191179..5192018) Shewanella sediminis HAW-EB3 5611637 YP_001475959.1 CDS Ssed_4227 NC_009831.1 5192113 5193243 R KEGG: sfr:Sfri_3427 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(5192113..5193243) Shewanella sediminis HAW-EB3 5611436 YP_001475960.1 CDS Ssed_4228 NC_009831.1 5193482 5193739 R KEGG: sfr:Sfri_3428 transcriptional regulators, TraR/DksA family protein; hypothetical protein complement(5193482..5193739) Shewanella sediminis HAW-EB3 5611437 YP_001475961.1 CDS Ssed_4229 NC_009831.1 5193962 5194330 R KEGG: hch:HCH_01698 predicted membrane protein; membrane protein complement(5193962..5194330) Shewanella sediminis HAW-EB3 5611438 YP_001475962.1 CDS Ssed_4230 NC_009831.1 5194773 5195270 R catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein complement(5194773..5195270) Shewanella sediminis HAW-EB3 5611439 YP_001475963.1 CDS Ssed_4231 NC_009831.1 5195410 5196561 R KEGG: son:SO_A0164 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(5195410..5196561) Shewanella sediminis HAW-EB3 5613407 YP_001475964.1 CDS Ssed_4232 NC_009831.1 5196891 5197760 D KEGG: sfr:Sfri_3440 transcriptional regulator, LysR family protein; carbonate dehydratase 5196891..5197760 Shewanella sediminis HAW-EB3 5613408 YP_001475965.1 CDS Ssed_4233 NC_009831.1 5197787 5198047 R hypothetical protein complement(5197787..5198047) Shewanella sediminis HAW-EB3 5613409 YP_001475966.1 CDS Ssed_4234 NC_009831.1 5198442 5199650 D KEGG: vfi:VF2364 NADH dehydrogenase; NADH dehydrogenase 5198442..5199650 Shewanella sediminis HAW-EB3 5613410 YP_001475967.1 CDS Ssed_4235 NC_009831.1 5200199 5201203 D KEGG: ppr:PBPRB1790 hypothetical ABC transporter, substrate binding protein; ABC transporter substrate-binding protein 5200199..5201203 Shewanella sediminis HAW-EB3 5614026 YP_001475968.1 CDS Ssed_4236 NC_009831.1 5201290 5202189 D KEGG: ppr:PBPRB1789 permease; permease 5201290..5202189 Shewanella sediminis HAW-EB3 5614027 YP_001475969.1 CDS Ssed_4237 NC_009831.1 5202182 5203441 D KEGG: ppr:PBPRB1788 glycine betaine ABC transporter ATP-binding protein; glycine betaine ABC transporter ATP-binding protein 5202182..5203441 Shewanella sediminis HAW-EB3 5614028 YP_001475970.1 CDS Ssed_4238 NC_009831.1 5203441 5204655 D KEGG: slo:Shew_3355 hypothetical protein; hypothetical protein 5203441..5204655 Shewanella sediminis HAW-EB3 5614029 YP_001475971.1 CDS Ssed_4239 NC_009831.1 5205184 5206191 D KEGG: vfi:VF2039 hypothetical protein; hypothetical protein 5205184..5206191 Shewanella sediminis HAW-EB3 5611164 YP_001475972.1 CDS Ssed_4240 NC_009831.1 5206472 5207050 D hypothetical protein 5206472..5207050 Shewanella sediminis HAW-EB3 5611165 YP_001475973.1 CDS Ssed_4241 NC_009831.1 5207332 5210055 R KEGG: pat:Patl_0732 UvrD/REP helicase; UvrD/REP helicase complement(5207332..5210055) Shewanella sediminis HAW-EB3 5611166 YP_001475974.1 CDS Ssed_4242 NC_009831.1 5210636 5211499 D KEGG: pat:Patl_0731 hypothetical protein; hypothetical protein 5210636..5211499 Shewanella sediminis HAW-EB3 5611167 YP_001475975.1 CDS Ssed_4243 NC_009831.1 5211806 5212735 D KEGG: pat:Patl_0730 phage integrase; phage integrase 5211806..5212735 Shewanella sediminis HAW-EB3 5611275 YP_001475976.1 CDS Ssed_4244 NC_009831.1 5212728 5214788 D KEGG: pat:Patl_0729 AAA ATPase, central region; ATPase AAA 5212728..5214788 Shewanella sediminis HAW-EB3 5611276 YP_001475977.1 CDS Ssed_4245 NC_009831.1 5214894 5215346 D KEGG: she:Shewmr4_3220 hypothetical protein; hypothetical protein 5214894..5215346 Shewanella sediminis HAW-EB3 5611277 YP_001475978.1 CDS Ssed_4246 NC_009831.1 5215460 5215888 D KEGG: she:Shewmr4_3221 hypothetical protein; hypothetical protein 5215460..5215888 Shewanella sediminis HAW-EB3 5611278 YP_001475979.1 CDS Ssed_4247 NC_009831.1 5216039 5217568 D KEGG: sfu:Sfum_2532 hypothetical protein; hypothetical protein 5216039..5217568 Shewanella sediminis HAW-EB3 5613604 YP_001475980.1 CDS Ssed_4248 NC_009831.1 5217924 5218922 R KEGG: sfu:Sfum_2533 type II site-specific deoxyribonuclease; hypothetical protein complement(5217924..5218922) Shewanella sediminis HAW-EB3 5613605 YP_001475981.1 CDS Ssed_4249 NC_009831.1 5219352 5221115 R KEGG: pat:Patl_0725 phage integrase; phage integrase complement(5219352..5221115) Shewanella sediminis HAW-EB3 5613606 YP_001475982.1 CDS Ssed_4250 NC_009831.1 5221678 5222520 R KEGG: slo:Shew_0228 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase complement(5221678..5222520) Shewanella sediminis HAW-EB3 5609596 YP_001475983.1 CDS Ssed_4251 NC_009831.1 5222608 5224488 D KEGG: slo:Shew_0227 LppC family lipoprotein; LppC family lipoprotein 5222608..5224488 Shewanella sediminis HAW-EB3 5610117 YP_001475984.1 CDS Ssed_4252 NC_009831.1 5224485 5224838 D KEGG: slo:Shew_0226 protein of unknown function UPF0102; hypothetical protein 5224485..5224838 Shewanella sediminis HAW-EB3 5610118 YP_001475985.1 CDS Ssed_4253 NC_009831.1 5224911 5225504 D KEGG: spc:Sputcn32_3694 phosphoheptose isomerase; phosphoheptose isomerase 5224911..5225504 Shewanella sediminis HAW-EB3 5610119 YP_001475986.1 CDS Ssed_4254 NC_009831.1 5225593 5226162 D KEGG: slo:Shew_0224 transport-associated; transport-associated 5225593..5226162 Shewanella sediminis HAW-EB3 5609643 YP_001475987.1 CDS Ssed_4255 NC_009831.1 5226202 5227089 R KEGG: sfr:Sfri_0385 protein of unknown function DUF6, transmembrane; hypothetical protein complement(5226202..5227089) Shewanella sediminis HAW-EB3 5609644 YP_001475988.1 CDS Ssed_4256 NC_009831.1 5227218 5228093 D KEGG: sbl:Sbal_4104 transcriptional regulator, LysR family; LysR family transcriptional regulator 5227218..5228093 Shewanella sediminis HAW-EB3 5609645 YP_001475989.1 CDS Ssed_4257 NC_009831.1 5228183 5229190 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(5228183..5229190) Shewanella sediminis HAW-EB3 5609646 YP_001475990.1 CDS Ssed_4258 NC_009831.1 5229187 5229894 R KEGG: shw:Sputw3181_3841 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(5229187..5229894) Shewanella sediminis HAW-EB3 5611587 YP_001475991.1 CDS Ssed_4259 NC_009831.1 5229898 5230572 R KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(5229898..5230572) Shewanella sediminis HAW-EB3 5611588 YP_001475992.1 CDS Ssed_4260 NC_009831.1 5230781 5231140 D KEGG: slo:Shew_0218 hypothetical protein; hypothetical protein 5230781..5231140 Shewanella sediminis HAW-EB3 5611589 YP_001475993.1 CDS Ssed_4261 NC_009831.1 5231176 5231337 D KEGG: slo:Shew_0217 hypothetical protein; hypothetical protein 5231176..5231337 Shewanella sediminis HAW-EB3 5611590 YP_001475994.1 CDS Ssed_4262 NC_009831.1 5231391 5232230 R KEGG: slo:Shew_0216 DNA adenine methylase; site-specific DNA-methyltransferase (adenine-specific) complement(5231391..5232230) Shewanella sediminis HAW-EB3 5611708 YP_001475995.1 CDS Ssed_4263 NC_009831.1 5232280 5233731 R KEGG: slo:Shew_0215 sporulation domain protein; sporulation domain-containing protein complement(5232280..5233731) Shewanella sediminis HAW-EB3 5611709 YP_001475996.1 CDS aroB NC_009831.1 5233749 5234825 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(5233749..5234825) Shewanella sediminis HAW-EB3 5611710 YP_001475997.1 CDS aroK NC_009831.1 5234834 5235349 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(5234834..5235349) Shewanella sediminis HAW-EB3 5611711 YP_001475998.1 CDS Ssed_4266 NC_009831.1 5235570 5237618 R KEGG: slo:Shew_0212 type IV pilus secretin PilQ; type IV pilus secretin PilQ complement(5235570..5237618) Shewanella sediminis HAW-EB3 5611404 YP_001475999.1 CDS Ssed_4267 NC_009831.1 5237640 5238155 R KEGG: shn:Shewana3_3896 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5237640..5238155) Shewanella sediminis HAW-EB3 5611405 YP_001476000.1 CDS Ssed_4268 NC_009831.1 5238158 5238778 R KEGG: slo:Shew_0210 pilus assembly protein, PilO; pilus assembly protein, PilO complement(5238158..5238778) Shewanella sediminis HAW-EB3 5611406 YP_001476001.1 CDS Ssed_4269 NC_009831.1 5238775 5239353 R KEGG: slo:Shew_0209 fimbrial assembly family protein; fimbrial assembly family protein complement(5238775..5239353) Shewanella sediminis HAW-EB3 5611407 YP_001476002.1 CDS Ssed_4270 NC_009831.1 5239341 5240420 R KEGG: slo:Shew_0208 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(5239341..5240420) Shewanella sediminis HAW-EB3 5611910 YP_001476003.1 CDS Ssed_4271 NC_009831.1 5240608 5243139 D KEGG: slo:Shew_0207 penicillin-binding protein, 1A family; peptidoglycan glycosyltransferase 5240608..5243139 Shewanella sediminis HAW-EB3 5611911 YP_001476004.1 CDS Ssed_4272 NC_009831.1 5243279 5244652 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(5243279..5244652) Shewanella sediminis HAW-EB3 5611912 YP_001476005.1 CDS Ssed_4273 NC_009831.1 5244766 5245989 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(5244766..5245989) Shewanella sediminis HAW-EB3 5611913 YP_001476006.1 CDS Ssed_4274 NC_009831.1 5246048 5246956 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(5246048..5246956) Shewanella sediminis HAW-EB3 5611965 YP_001476007.1 CDS Ssed_4275 NC_009831.1 5247073 5247864 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(5247073..5247864) Shewanella sediminis HAW-EB3 5611966 YP_001476008.1 CDS argC NC_009831.1 5247887 5248867 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(5247887..5248867) Shewanella sediminis HAW-EB3 5611967 YP_001476009.1 CDS Ssed_4277 NC_009831.1 5249133 5250284 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 5249133..5250284 Shewanella sediminis HAW-EB3 5611968 YP_001476010.1 CDS Ssed_4278 NC_009831.1 5250464 5253100 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 5250464..5253100 Shewanella sediminis HAW-EB3 5612015 YP_001476011.1 CDS Ssed_4279 NC_009831.1 5253100 5253639 D KEGG: slo:Shew_0199 protein of unknown function DUF1439; hypothetical protein 5253100..5253639 Shewanella sediminis HAW-EB3 5612016 YP_001476012.1 CDS Ssed_4280 NC_009831.1 5253716 5254990 R KEGG: shw:Sputw3181_3863 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(5253716..5254990) Shewanella sediminis HAW-EB3 5612017 YP_001476013.1 CDS Ssed_4281 NC_009831.1 5261231 5261809 R KEGG: slo:Shew_0196 redoxin domain protein; redoxin domain-containing protein complement(5261231..5261809) Shewanella sediminis HAW-EB3 5609757 YP_001476014.1 CDS Ssed_4282 NC_009831.1 5261806 5262288 R KEGG: slo:Shew_0195 cytochrome c biogenesis protein; cytochrome c biogenesis protein complement(5261806..5262288) Shewanella sediminis HAW-EB3 5612035 YP_001476015.1 CDS Ssed_4283 NC_009831.1 5262285 5262842 R KEGG: slo:Shew_0194 periplasmic protein thiol--disulphide oxidoreductase DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(5262285..5262842) Shewanella sediminis HAW-EB3 5612036 YP_001476016.1 CDS Ssed_4284 NC_009831.1 5262860 5264839 R KEGG: slo:Shew_0193 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(5262860..5264839) Shewanella sediminis HAW-EB3 5612037 YP_001476017.1 CDS Ssed_4285 NC_009831.1 5265249 5266496 D KEGG: slo:Shew_0192 TPR repeat-containing protein; hypothetical protein 5265249..5266496 Shewanella sediminis HAW-EB3 5612038 YP_001476018.1 CDS Ssed_4286 NC_009831.1 5266622 5266915 R KEGG: slo:Shew_0191 cytochrome c, class I; cytochrome c, class I complement(5266622..5266915) Shewanella sediminis HAW-EB3 5613351 YP_001476019.1 CDS Ssed_4287 NC_009831.1 5267262 5267912 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 5267262..5267912 Shewanella sediminis HAW-EB3 5613352 YP_001476020.1 CDS Ssed_4288 NC_009831.1 5267922 5268608 D KEGG: slo:Shew_0189 heme exporter protein CcmB; heme exporter protein CcmB 5267922..5268608 Shewanella sediminis HAW-EB3 5613353 YP_001476021.1 CDS Ssed_4289 NC_009831.1 5268610 5269356 D KEGG: slo:Shew_0188 heme exporter protein CcmC; heme exporter protein CcmC 5268610..5269356 Shewanella sediminis HAW-EB3 5613508 YP_001476022.1 CDS Ssed_4290 NC_009831.1 5269356 5269553 D KEGG: shw:Sputw3181_0185 heme exporter protein D (CcmD); heme exporter protein D (CcmD) 5269356..5269553 Shewanella sediminis HAW-EB3 5613509 YP_001476023.1 CDS Ssed_4291 NC_009831.1 5269553 5270038 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 5269553..5270038 Shewanella sediminis HAW-EB3 5613510 YP_001476024.1 CDS Ssed_4292 NC_009831.1 5270108 5271148 D KEGG: slo:Shew_0185 hypothetical protein; hypothetical protein 5270108..5271148 Shewanella sediminis HAW-EB3 5613511 YP_001476025.1 CDS rplQ NC_009831.1 5271234 5271632 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(5271234..5271632) Shewanella sediminis HAW-EB3 5613993 YP_001476026.1 CDS Ssed_4294 NC_009831.1 5271672 5272661 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(5271672..5272661) Shewanella sediminis HAW-EB3 5613994 YP_001476027.1 CDS rpsD NC_009831.1 5272686 5273306 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(5272686..5273306) Shewanella sediminis HAW-EB3 5613995 YP_001476028.1 CDS Ssed_4296 NC_009831.1 5273342 5273734 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(5273342..5273734) Shewanella sediminis HAW-EB3 5613996 YP_001476029.1 CDS rpsM NC_009831.1 5273749 5274105 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(5273749..5274105) Shewanella sediminis HAW-EB3 5612772 YP_001476030.1 CDS secY NC_009831.1 5274357 5275697 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(5274357..5275697) Shewanella sediminis HAW-EB3 5612773 YP_001476031.1 CDS rplO NC_009831.1 5275705 5276139 R late assembly protein; 50S ribosomal protein L15 complement(5275705..5276139) Shewanella sediminis HAW-EB3 5612774 YP_001476032.1 CDS rpsE NC_009831.1 5276333 5276836 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(5276333..5276836) Shewanella sediminis HAW-EB3 5612775 YP_001476033.1 CDS rplR NC_009831.1 5276850 5277200 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(5276850..5277200) Shewanella sediminis HAW-EB3 5611504 YP_001476034.1 CDS rplF NC_009831.1 5277211 5277741 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(5277211..5277741) Shewanella sediminis HAW-EB3 5611505 YP_001476035.1 CDS rpsH NC_009831.1 5277752 5278144 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(5277752..5278144) Shewanella sediminis HAW-EB3 5611506 YP_001476036.1 CDS rpsN NC_009831.1 5278169 5278474 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(5278169..5278474) Shewanella sediminis HAW-EB3 5611507 YP_001476037.1 CDS rplE NC_009831.1 5278485 5279024 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(5278485..5279024) Shewanella sediminis HAW-EB3 5613332 YP_001476038.1 CDS rplX NC_009831.1 5279037 5279351 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(5279037..5279351) Shewanella sediminis HAW-EB3 5613333 YP_001476039.1 CDS rplN NC_009831.1 5279362 5279730 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(5279362..5279730) Shewanella sediminis HAW-EB3 5613334 YP_001476040.1 CDS rpsQ NC_009831.1 5279907 5280155 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(5279907..5280155) Shewanella sediminis HAW-EB3 5613335 YP_001476041.1 CDS Ssed_4309 NC_009831.1 5280155 5280346 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(5280155..5280346) Shewanella sediminis HAW-EB3 5613485 YP_001476042.1 CDS rplP NC_009831.1 5280346 5280756 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(5280346..5280756) Shewanella sediminis HAW-EB3 5613486 YP_001476043.1 CDS rpsC NC_009831.1 5280768 5281457 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(5280768..5281457) Shewanella sediminis HAW-EB3 5613487 YP_001476044.1 CDS rplV NC_009831.1 5281467 5281799 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(5281467..5281799) Shewanella sediminis HAW-EB3 5613488 YP_001476045.1 CDS rpsS NC_009831.1 5281815 5282093 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(5281815..5282093) Shewanella sediminis HAW-EB3 5609840 YP_001476046.1 CDS rplB NC_009831.1 5282105 5282932 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(5282105..5282932) Shewanella sediminis HAW-EB3 5609841 YP_001476047.1 CDS rplW NC_009831.1 5282949 5283248 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(5282949..5283248) Shewanella sediminis HAW-EB3 5609842 YP_001476048.1 CDS rplD NC_009831.1 5283245 5283850 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(5283245..5283850) Shewanella sediminis HAW-EB3 5609843 YP_001476049.1 CDS rplC NC_009831.1 5283867 5284505 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(5283867..5284505) Shewanella sediminis HAW-EB3 5613806 YP_001476050.1 CDS rpsJ NC_009831.1 5284521 5284832 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(5284521..5284832) Shewanella sediminis HAW-EB3 5613807 YP_001476051.1 CDS Ssed_4319 NC_009831.1 5285206 5286390 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(5285206..5286390) Shewanella sediminis HAW-EB3 5613808 YP_001476052.1 CDS Ssed_4320 NC_009831.1 5286473 5288569 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(5286473..5288569) Shewanella sediminis HAW-EB3 5613809 YP_001476053.1 CDS Ssed_4321 NC_009831.1 5288645 5289115 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(5288645..5289115) Shewanella sediminis HAW-EB3 5614127 YP_001476054.1 CDS rpsL NC_009831.1 5289196 5289570 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(5289196..5289570) Shewanella sediminis HAW-EB3 5614128 YP_001476055.1 CDS Ssed_4323 NC_009831.1 5289761 5293978 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(5289761..5293978) Shewanella sediminis HAW-EB3 5614129 YP_001476056.1 CDS rpoB NC_009831.1 5294059 5298090 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(5294059..5298090) Shewanella sediminis HAW-EB3 5609806 YP_001476057.1 CDS rplL NC_009831.1 5298329 5298697 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(5298329..5298697) Shewanella sediminis HAW-EB3 5609807 YP_001476058.1 CDS rplJ NC_009831.1 5298744 5299244 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(5298744..5299244) Shewanella sediminis HAW-EB3 5609808 YP_001476059.1 CDS rplA NC_009831.1 5299509 5300210 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(5299509..5300210) Shewanella sediminis HAW-EB3 5609809 YP_001476060.1 CDS rplK NC_009831.1 5300215 5300643 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(5300215..5300643) Shewanella sediminis HAW-EB3 5610387 YP_001476061.1 CDS Ssed_4329 NC_009831.1 5300768 5301319 R KEGG: sfr:Sfri_0136 NusG antitermination factor; NusG antitermination factor complement(5300768..5301319) Shewanella sediminis HAW-EB3 5610388 YP_001476062.1 CDS secE NC_009831.1 5301329 5301700 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(5301329..5301700) Shewanella sediminis HAW-EB3 5610389 YP_001476063.1 CDS Ssed_4333 NC_009831.1 5303845 5304795 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 5303845..5304795 Shewanella sediminis HAW-EB3 5610897 YP_001476064.1 CDS Ssed_4334 NC_009831.1 5304812 5305774 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(5304812..5305774) Shewanella sediminis HAW-EB3 5610495 YP_001476065.1 CDS murB NC_009831.1 5305767 5306801 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(5305767..5306801) Shewanella sediminis HAW-EB3 5610496 YP_001476066.1 CDS Ssed_4336 NC_009831.1 5313552 5314019 D KEGG: slo:Shew_0140 RNP-1-like RNA-binding protein; RNP-1-like RNA-binding protein 5313552..5314019 Shewanella sediminis HAW-EB3 5610211 YP_001476067.1 CDS Ssed_4337 NC_009831.1 5314048 5314896 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(5314048..5314896) Shewanella sediminis HAW-EB3 5613664 YP_001476068.1 CDS Ssed_4338 NC_009831.1 5315003 5316100 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5315003..5316100 Shewanella sediminis HAW-EB3 5613665 YP_001476069.1 CDS Ssed_4339 NC_009831.1 5316217 5316834 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(5316217..5316834) Shewanella sediminis HAW-EB3 5613666 YP_001476070.1 CDS Ssed_4340 NC_009831.1 5316987 5318105 D KEGG: sbl:Sbal_4181 stearoyl-CoA 9-desaturase; stearoyl-CoA 9-desaturase 5316987..5318105 Shewanella sediminis HAW-EB3 5613667 YP_001476071.1 CDS Ssed_4341 NC_009831.1 5318306 5319346 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 5318306..5319346 Shewanella sediminis HAW-EB3 5611720 YP_001476072.1 CDS Ssed_4342 NC_009831.1 5319346 5320455 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 5319346..5320455 Shewanella sediminis HAW-EB3 5611721 YP_001476073.1 CDS Ssed_4343 NC_009831.1 5320517 5322286 R KEGG: slo:Shew_0133 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(5320517..5322286) Shewanella sediminis HAW-EB3 5611722 YP_001476074.1 CDS Ssed_4344 NC_009831.1 5322318 5322764 R KEGG: shn:Shewana3_0171 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5322318..5322764) Shewanella sediminis HAW-EB3 5611723 YP_001476075.1 CDS Ssed_4345 NC_009831.1 5322757 5323569 R KEGG: slo:Shew_0130 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(5322757..5323569) Shewanella sediminis HAW-EB3 5613140 YP_001476076.1 CDS nudE NC_009831.1 5323626 5324171 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(5323626..5324171) Shewanella sediminis HAW-EB3 5613141 YP_001476077.1 CDS Ssed_4347 NC_009831.1 5324260 5324925 D KEGG: sbl:Sbal_4195 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase 5324260..5324925 Shewanella sediminis HAW-EB3 5613142 YP_001476078.1 CDS Ssed_4348 NC_009831.1 5325196 5325954 R KEGG: slo:Shew_3609 type II secretion system protein N; type II secretion system protein N complement(5325196..5325954) Shewanella sediminis HAW-EB3 5613143 YP_001476079.1 CDS Ssed_4349 NC_009831.1 5326035 5326511 R KEGG: slo:Shew_3610 general secretion pathway M protein; general secretion pathway M protein complement(5326035..5326511) Shewanella sediminis HAW-EB3 5613186 YP_001476080.1 CDS Ssed_4350 NC_009831.1 5326513 5327712 R KEGG: slo:Shew_3611 general secretion pathway protein L; general secretion pathway protein L complement(5326513..5327712) Shewanella sediminis HAW-EB3 5613187 YP_001476081.1 CDS Ssed_4351 NC_009831.1 5327793 5328791 R KEGG: slo:Shew_3612 general secretion pathway protein K; general secretion pathway protein K complement(5327793..5328791) Shewanella sediminis HAW-EB3 5613188 YP_001476082.1 CDS Ssed_4352 NC_009831.1 5328791 5329543 R KEGG: slo:Shew_3613 general secretion pathway protein J; general secretion pathway protein J complement(5328791..5329543) Shewanella sediminis HAW-EB3 5613189 YP_001476083.1 CDS Ssed_4353 NC_009831.1 5329524 5329895 R KEGG: sbl:Sbal_4201 general secretion pathway protein I; general secretion pathway protein I complement(5329524..5329895) Shewanella sediminis HAW-EB3 5609798 YP_001476084.1 CDS Ssed_4354 NC_009831.1 5329979 5330551 R KEGG: slo:Shew_3615 general secretion pathway protein H; general secretion pathway protein H complement(5329979..5330551) Shewanella sediminis HAW-EB3 5609799 YP_001476085.1 CDS Ssed_4355 NC_009831.1 5330581 5331015 R KEGG: slo:Shew_3616 general secretion pathway protein G; general secretion pathway protein G complement(5330581..5331015) Shewanella sediminis HAW-EB3 5609800 YP_001476086.1 CDS Ssed_4356 NC_009831.1 5331163 5332386 R KEGG: slo:Shew_3617 general secretion pathway protein F; general secretion pathway protein F complement(5331163..5332386) Shewanella sediminis HAW-EB3 5609801 YP_001476087.1 CDS Ssed_4357 NC_009831.1 5332390 5333964 R KEGG: slo:Shew_3618 general secretory pathway protein E; general secretory pathway protein E complement(5332390..5333964) Shewanella sediminis HAW-EB3 5609715 YP_001476088.1 CDS Ssed_4358 NC_009831.1 5333954 5336128 R KEGG: slo:Shew_3619 general secretion pathway protein D; general secretion pathway protein D complement(5333954..5336128) Shewanella sediminis HAW-EB3 5609716 YP_001476089.1 CDS Ssed_4359 NC_009831.1 5336154 5337065 R KEGG: slo:Shew_3620 general secretion pathway protein C; general secretion pathway protein C complement(5336154..5337065) Shewanella sediminis HAW-EB3 5609717 YP_001476090.1 CDS Ssed_4360 NC_009831.1 5337323 5337721 D KEGG: slo:Shew_3621 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 5337323..5337721 Shewanella sediminis HAW-EB3 5610939 YP_001476091.1 CDS hslO NC_009831.1 5337834 5338694 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 5337834..5338694 Shewanella sediminis HAW-EB3 5610940 YP_001476092.1 CDS Ssed_4362 NC_009831.1 5338899 5340440 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 5338899..5340440 Shewanella sediminis HAW-EB3 5610941 YP_001476093.1 CDS Ssed_4363 NC_009831.1 5340810 5341232 D KEGG: slo:Shew_3626 hypothetical protein; hypothetical protein 5340810..5341232 Shewanella sediminis HAW-EB3 5610942 YP_001476094.1 CDS Ssed_4364 NC_009831.1 5341240 5341476 D KEGG: slo:Shew_3627 transcriptional regulator, XRE family; transcriptional regulator protein-like protein 5341240..5341476 Shewanella sediminis HAW-EB3 5610743 YP_001476095.1 CDS Ssed_4365 NC_009831.1 5341886 5343733 D KEGG: son:SO0152 hypothetical carboxypeptidase; carboxypeptidase 5341886..5343733 Shewanella sediminis HAW-EB3 5610744 YP_001476096.1 CDS Ssed_4366 NC_009831.1 5344167 5345633 D KEGG: mgm:Mmc1_0550 hypothetical protein; hypothetical protein 5344167..5345633 Shewanella sediminis HAW-EB3 5610745 YP_001476097.1 CDS Ssed_4367 NC_009831.1 5345774 5346256 D KEGG: vpa:VP1222 cytochrome c-type protein; cytochrome c-type protein 5345774..5346256 Shewanella sediminis HAW-EB3 5610746 YP_001476098.1 CDS Ssed_4368 NC_009831.1 5346427 5347221 R KEGG: shw:Sputw3181_3927 methyltransferase type 12; type 12 methyltransferase complement(5346427..5347221) Shewanella sediminis HAW-EB3 5610727 YP_001476099.1 CDS Ssed_4369 NC_009831.1 5347468 5348223 D KEGG: shm:Shewmr7_0138 lipoprotein; lipoprotein 5347468..5348223 Shewanella sediminis HAW-EB3 5610728 YP_001476100.1 CDS Ssed_4370 NC_009831.1 5349120 5349374 R KEGG: shw:Sputw3181_3936 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C complement(5349120..5349374) Shewanella sediminis HAW-EB3 5610729 YP_001476101.1 CDS Ssed_4371 NC_009831.1 5349371 5351560 R KEGG: sbl:Sbal_4218 oligopeptidase B; oligopeptidase B complement(5349371..5351560) Shewanella sediminis HAW-EB3 5610730 YP_001476102.1 CDS ribB NC_009831.1 5352238 5352891 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 5352238..5352891 Shewanella sediminis HAW-EB3 5610468 YP_001476103.1 CDS Ssed_4373 NC_009831.1 5353222 5356452 D KEGG: slo:Shew_0041 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 5353222..5356452 Shewanella sediminis HAW-EB3 5610469 YP_001476104.1 CDS Ssed_4374 NC_009831.1 5356576 5357103 R KEGG: slo:Shew_0042 ferritin, Dps family protein; ferroxidase complement(5356576..5357103) Shewanella sediminis HAW-EB3 5610470 YP_001476105.1 CDS Ssed_4375 NC_009831.1 5357367 5360483 D KEGG: slo:Shew_0044 acriflavin resistance protein; acriflavin resistance protein 5357367..5360483 Shewanella sediminis HAW-EB3 5610471 YP_001476106.1 CDS Ssed_4376 NC_009831.1 5360483 5361595 D KEGG: slo:Shew_0045 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 5360483..5361595 Shewanella sediminis HAW-EB3 5610633 YP_001476107.1 CDS Ssed_4377 NC_009831.1 5361967 5363211 D KEGG: slo:Shew_0046 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 5361967..5363211 Shewanella sediminis HAW-EB3 5610634 YP_001476108.1 CDS Ssed_4378 NC_009831.1 5363294 5364079 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 5363294..5364079 Shewanella sediminis HAW-EB3 5610635 YP_001476109.1 CDS Ssed_4379 NC_009831.1 5364171 5364476 R KEGG: pfo:Pfl_3252 lipoprotein; lipoprotein complement(5364171..5364476) Shewanella sediminis HAW-EB3 5610636 YP_001476110.1 CDS Ssed_4380 NC_009831.1 5364684 5365682 D KEGG: sdn:Sden_2943 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 5364684..5365682 Shewanella sediminis HAW-EB3 5613500 YP_001476111.1 CDS Ssed_4381 NC_009831.1 5365717 5366391 R hypothetical protein complement(5365717..5366391) Shewanella sediminis HAW-EB3 5613501 YP_001476112.1 CDS Ssed_4382 NC_009831.1 5366388 5366873 R KEGG: sde:Sde_2365 sigma-24 (FecI-like); sigma-24 FecI-like protein complement(5366388..5366873) Shewanella sediminis HAW-EB3 5613502 YP_001476113.1 CDS Ssed_4383 NC_009831.1 5366874 5367653 R KEGG: hypothetical protein; hypothetical protein complement(5366874..5367653) Shewanella sediminis HAW-EB3 5613503 YP_001476114.1 CDS Ssed_4384 NC_009831.1 5367644 5368546 R KEGG: hch:HCH_00631 hypothetical protein; hypothetical protein complement(5367644..5368546) Shewanella sediminis HAW-EB3 5610818 YP_001476115.1 CDS Ssed_4385 NC_009831.1 5368546 5368830 R KEGG: cps:CPS_0845 hypothetical protein; hypothetical protein complement(5368546..5368830) Shewanella sediminis HAW-EB3 5610819 YP_001476116.1 CDS Ssed_4386 NC_009831.1 5369061 5370284 R KEGG: slo:Shew_0103 sodium/glutamate symporter; sodium/glutamate symporter complement(5369061..5370284) Shewanella sediminis HAW-EB3 5610820 YP_001476117.1 CDS Ssed_4387 NC_009831.1 5370621 5370779 R KEGG: shm:Shewmr7_3732 hypothetical protein; hypothetical protein complement(5370621..5370779) Shewanella sediminis HAW-EB3 5610821 YP_001476118.1 CDS Ssed_4388 NC_009831.1 5370926 5371705 D KEGG: son:SO1260 hypothetical amino acid ABC transporter; amino acid ABC transporter 5370926..5371705 Shewanella sediminis HAW-EB3 5611347 YP_001476119.1 CDS Ssed_4389 NC_009831.1 5371787 5371951 R KEGG: slo:Shew_0100 protein of unknown function UPF0057; hypothetical protein complement(5371787..5371951) Shewanella sediminis HAW-EB3 5611348 YP_001476120.1 CDS Ssed_4390 NC_009831.1 5371975 5372649 R KEGG: slo:Shew_0099 pseudouridine synthase Rlu family protein, TIGR01621; pseudouridine synthase complement(5371975..5372649) Shewanella sediminis HAW-EB3 5611349 YP_001476121.1 CDS Ssed_4391 NC_009831.1 5372695 5373918 R KEGG: slo:Shew_0098 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(5372695..5373918) Shewanella sediminis HAW-EB3 5611350 YP_001476122.1 CDS Ssed_4392 NC_009831.1 5374001 5374678 R KEGG: slo:Shew_0097 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(5374001..5374678) Shewanella sediminis HAW-EB3 5609995 YP_001476123.1 CDS Ssed_4393 NC_009831.1 5374688 5375224 R KEGG: slo:Shew_0096 hypothetical protein; hypothetical protein complement(5374688..5375224) Shewanella sediminis HAW-EB3 5609996 YP_001476124.1 CDS Ssed_4394 NC_009831.1 5375380 5375739 R KEGG: slo:Shew_0095 conserved hypothetical protein 156; hypothetical protein complement(5375380..5375739) Shewanella sediminis HAW-EB3 5609997 YP_001476125.1 CDS Ssed_4395 NC_009831.1 5375873 5376982 R KEGG: slo:Shew_0094 ABC transporter-related protein; ABC transporter-like protein complement(5375873..5376982) Shewanella sediminis HAW-EB3 5609998 YP_001476126.1 CDS Ssed_4396 NC_009831.1 5376963 5377643 R KEGG: slo:Shew_0093 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(5376963..5377643) Shewanella sediminis HAW-EB3 5610049 YP_001476127.1 CDS Ssed_4397 NC_009831.1 5377647 5378462 R KEGG: slo:Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(5377647..5378462) Shewanella sediminis HAW-EB3 5610050 YP_001476128.1 CDS Ssed_4398 NC_009831.1 5378512 5378976 R KEGG: slo:Shew_0091 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis protein MoaE complement(5378512..5378976) Shewanella sediminis HAW-EB3 5610051 YP_001476129.1 CDS Ssed_4399 NC_009831.1 5378979 5379230 R KEGG: slo:Shew_0090 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 complement(5378979..5379230) Shewanella sediminis HAW-EB3 5610052 YP_001476130.1 CDS moaC NC_009831.1 5379240 5379716 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(5379240..5379716) Shewanella sediminis HAW-EB3 5610601 YP_001476131.1 CDS Ssed_4401 NC_009831.1 5379797 5380321 R KEGG: slo:Shew_0088 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(5379797..5380321) Shewanella sediminis HAW-EB3 5610602 YP_001476132.1 CDS moaA NC_009831.1 5380505 5381485 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(5380505..5381485) Shewanella sediminis HAW-EB3 5610603 YP_001476133.1 CDS Ssed_4403 NC_009831.1 5381835 5383484 D KEGG: slo:Shew_0086 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 5381835..5383484 Shewanella sediminis HAW-EB3 5609711 YP_001476134.1 CDS Ssed_4404 NC_009831.1 5383782 5385698 D KEGG: slo:Shew_0085 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5383782..5385698 Shewanella sediminis HAW-EB3 5609712 YP_001476135.1 CDS Ssed_4405 NC_009831.1 5385831 5386199 R KEGG: slo:Shew_0084 hypothetical protein; hypothetical protein complement(5385831..5386199) Shewanella sediminis HAW-EB3 5609713 YP_001476136.1 CDS Ssed_4406 NC_009831.1 5386236 5386934 R KEGG: slo:Shew_0083 MOSC domain containing protein; MOSC domain-containing protein complement(5386236..5386934) Shewanella sediminis HAW-EB3 5609714 YP_001476137.1 CDS Ssed_4407 NC_009831.1 5387103 5387555 D KEGG: slo:Shew_0082 hypothetical protein; hypothetical protein 5387103..5387555 Shewanella sediminis HAW-EB3 5610780 YP_001476138.1 CDS Ssed_4408 NC_009831.1 5387628 5388356 D KEGG: slo:Shew_0081 two component transcriptional regulator, winged helix family; two component transcriptional regulator 5387628..5388356 Shewanella sediminis HAW-EB3 5610781 YP_001476139.1 CDS Ssed_4409 NC_009831.1 5388391 5389674 D KEGG: slo:Shew_0080 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 5388391..5389674 Shewanella sediminis HAW-EB3 5610782 YP_001476140.1 CDS Ssed_4410 NC_009831.1 5389862 5390374 D KEGG: sdn:Sden_0559 hypothetical protein; hypothetical protein 5389862..5390374 Shewanella sediminis HAW-EB3 5610783 YP_001476141.1 CDS Ssed_4411 NC_009831.1 5390403 5391860 R KEGG: she:Shewmr4_0268 diguanylate cyclase; diguanylate cyclase complement(5390403..5391860) Shewanella sediminis HAW-EB3 5610585 YP_001476142.1 CDS Ssed_4412 NC_009831.1 5392180 5393019 R KEGG: shn:Shewana3_0268 site-specific DNA-methyltransferase (adenine-specific); site-specific DNA-methyltransferase (adenine-specific) complement(5392180..5393019) Shewanella sediminis HAW-EB3 5610586 YP_001476143.1 CDS Ssed_4413 NC_009831.1 5393111 5393668 R KEGG: slo:Shew_0077 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5393111..5393668) Shewanella sediminis HAW-EB3 5610587 YP_001476144.1 CDS Ssed_4414 NC_009831.1 5394349 5395686 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(5394349..5395686) Shewanella sediminis HAW-EB3 5610588 YP_001476145.1 CDS Ssed_4415 NC_009831.1 5396098 5397084 R KEGG: son:SO4515 formate dehydrogenase, C subunit; formate dehydrogenase, C subunit complement(5396098..5397084) Shewanella sediminis HAW-EB3 5613024 YP_001476146.1 CDS Ssed_4416 NC_009831.1 5397290 5397859 R KEGG: slo:Shew_0064 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5397290..5397859) Shewanella sediminis HAW-EB3 5613025 YP_001476147.1 CDS Ssed_4417 NC_009831.1 5397888 5400743 R KEGG: slo:Shew_0063 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(5397888..5400743) Shewanella sediminis HAW-EB3 5613026 YP_001476148.1 CDS Ssed_4418 NC_009831.1 5400762 5400959 R KEGG: slo:Shew_0062 hypothetical protein; hypothetical protein complement(5400762..5400959) Shewanella sediminis HAW-EB3 5613027 YP_001476149.1 CDS Ssed_4419 NC_009831.1 5401581 5402588 R KEGG: slo:Shew_0061 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(5401581..5402588) Shewanella sediminis HAW-EB3 5610521 YP_001476150.1 CDS Ssed_4420 NC_009831.1 5402649 5403239 R KEGG: slo:Shew_0060 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5402649..5403239) Shewanella sediminis HAW-EB3 5610522 YP_001476151.1 CDS Ssed_4421 NC_009831.1 5403267 5406116 R KEGG: slo:Shew_0059 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(5403267..5406116) Shewanella sediminis HAW-EB3 5610523 YP_001476152.1 CDS Ssed_4422 NC_009831.1 5406153 5406353 R KEGG: slo:Shew_0058 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(5406153..5406353) Shewanella sediminis HAW-EB3 5610524 YP_001476153.1 CDS Ssed_4423 NC_009831.1 5406537 5407232 R KEGG: slo:Shew_0057 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein complement(5406537..5407232) Shewanella sediminis HAW-EB3 5612305 YP_001476154.1 CDS Ssed_4424 NC_009831.1 5407243 5408934 R KEGG: slo:Shew_0056 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5407243..5408934) Shewanella sediminis HAW-EB3 5612306 YP_001476155.1 CDS Ssed_4425 NC_009831.1 5409163 5409786 R KEGG: slo:Shew_0055 hypothetical protein; hypothetical protein complement(5409163..5409786) Shewanella sediminis HAW-EB3 5612307 YP_001476156.1 CDS Ssed_4426 NC_009831.1 5409786 5410256 R KEGG: slo:Shew_0054 hypothetical protein; hypothetical protein complement(5409786..5410256) Shewanella sediminis HAW-EB3 5612308 YP_001476157.1 CDS Ssed_4427 NC_009831.1 5410511 5411398 D KEGG: slo:Shew_0053 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 5410511..5411398 Shewanella sediminis HAW-EB3 5611663 YP_001476158.1 CDS Ssed_4428 NC_009831.1 5411486 5412391 D KEGG: slo:Shew_0052 DNA binding domain, excisionase family; DNA binding domain-containing protein 5411486..5412391 Shewanella sediminis HAW-EB3 5611664 YP_001476159.1 CDS Ssed_4429 NC_009831.1 5413578 5414792 R KEGG: slo:Shew_3741 protein of unknown function DUF890; SAM-dependent methyltransferase complement(5413578..5414792) Shewanella sediminis HAW-EB3 5611665 YP_001476160.1 CDS Ssed_4430 NC_009831.1 5414852 5415265 R KEGG: slo:Shew_3742 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein complement(5414852..5415265) Shewanella sediminis HAW-EB3 5611666 YP_001476161.1 CDS Ssed_4431 NC_009831.1 5415374 5415937 D KEGG: slo:Shew_3743 chorismate lyase; chorismate lyase 5415374..5415937 Shewanella sediminis HAW-EB3 5609639 YP_001476162.1 CDS Ssed_4432 NC_009831.1 5416013 5418868 R KEGG: slo:Shew_3744 peptidase M6, immune inhibitor A; peptidase M6, immune inhibitor A complement(5416013..5418868) Shewanella sediminis HAW-EB3 5609640 YP_001476163.1 CDS Ssed_4433 NC_009831.1 5418883 5419206 R KEGG: sdn:Sden_0093 hypothetical protein; hypothetical protein complement(5418883..5419206) Shewanella sediminis HAW-EB3 5609641 YP_001476164.1 CDS Ssed_4434 NC_009831.1 5419390 5421546 R KEGG: slo:Shew_3745 glycoside hydrolase, family 37; glycoside hydrolase complement(5419390..5421546) Shewanella sediminis HAW-EB3 5609642 YP_001476165.1 CDS Ssed_4435 NC_009831.1 5421963 5422568 R KEGG: slo:Shew_3746 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein complement(5421963..5422568) Shewanella sediminis HAW-EB3 5609942 YP_001476166.1 CDS Ssed_4436 NC_009831.1 5422807 5424336 D KEGG: slo:Shew_3747 hypothetical protein; hypothetical protein 5422807..5424336 Shewanella sediminis HAW-EB3 5609943 YP_001476167.1 CDS Ssed_4437 NC_009831.1 5424546 5425307 D KEGG: slo:Shew_3748 protein of unknown function DUF833; hypothetical protein 5424546..5425307 Shewanella sediminis HAW-EB3 5609944 YP_001476168.1 CDS Ssed_4438 NC_009831.1 5425288 5425851 R KEGG: pat:Patl_3910 hypothetical protein; hypothetical protein complement(5425288..5425851) Shewanella sediminis HAW-EB3 5609945 YP_001476169.1 CDS Ssed_4439 NC_009831.1 5425975 5426397 R KEGG: slo:Shew_3749 hypothetical protein; hypothetical protein complement(5425975..5426397) Shewanella sediminis HAW-EB3 5611468 YP_001476170.1 CDS Ssed_4440 NC_009831.1 5426839 5427408 D KEGG: slo:Shew_3750 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 5426839..5427408 Shewanella sediminis HAW-EB3 5611469 YP_001476171.1 CDS Ssed_4441 NC_009831.1 5427494 5428120 D KEGG: slo:Shew_3751 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) 5427494..5428120 Shewanella sediminis HAW-EB3 5611470 YP_001476172.1 CDS Ssed_4442 NC_009831.1 5428304 5429566 R KEGG: shw:Sputw3181_3954 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(5428304..5429566) Shewanella sediminis HAW-EB3 5611471 YP_001476173.1 CDS Ssed_4443 NC_009831.1 5429763 5430299 D KEGG: slo:Shew_3753 hypothetical protein; hypothetical protein 5429763..5430299 Shewanella sediminis HAW-EB3 5610931 YP_001476174.1 CDS Ssed_4444 NC_009831.1 5430392 5431018 D KEGG: slo:Shew_3754 hypothetical protein; hypothetical protein 5430392..5431018 Shewanella sediminis HAW-EB3 5610932 YP_001476175.1 CDS Ssed_4445 NC_009831.1 5431147 5431647 R KEGG: slo:Shew_3755 thioesterase superfamily protein; thioesterase superfamily protein complement(5431147..5431647) Shewanella sediminis HAW-EB3 5610933 YP_001476176.1 CDS Ssed_4446 NC_009831.1 5431866 5433398 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(5431866..5433398) Shewanella sediminis HAW-EB3 5610934 YP_001476177.1 CDS Ssed_4447 NC_009831.1 5433402 5435072 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(5433402..5435072) Shewanella sediminis HAW-EB3 5610913 YP_001476178.1 CDS Ssed_4448 NC_009831.1 5435247 5435948 R KEGG: slo:Shew_3758 transcriptional regulator, histidine utilization repressor, GntR family; histidine utilization repressor complement(5435247..5435948) Shewanella sediminis HAW-EB3 5610914 YP_001476179.1 CDS Ssed_4449 NC_009831.1 5436144 5437370 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 5436144..5437370 Shewanella sediminis HAW-EB3 5610915 YP_001476180.1 CDS Ssed_4450 NC_009831.1 5437632 5438384 R hypothetical protein complement(5437632..5438384) Shewanella sediminis HAW-EB3 5613422 YP_001476181.1 CDS Ssed_4451 NC_009831.1 5438990 5439538 R KEGG: saz:Sama_3428 outer membrane protein; outer membrane protein complement(5438990..5439538) Shewanella sediminis HAW-EB3 5613423 YP_001476182.1 CDS Ssed_4452 NC_009831.1 5440024 5441208 R KEGG: slo:Shew_3769 hypothetical protein; hypothetical protein complement(5440024..5441208) Shewanella sediminis HAW-EB3 5613424 YP_001476183.1 CDS Ssed_4453 NC_009831.1 5441444 5442244 R KEGG: slo:Shew_3770 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(5441444..5442244) Shewanella sediminis HAW-EB3 5613425 YP_001476184.1 CDS Ssed_4454 NC_009831.1 5442504 5443181 D KEGG: slo:Shew_3771 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 5442504..5443181 Shewanella sediminis HAW-EB3 5613438 YP_001476185.1 CDS Ssed_4455 NC_009831.1 5443346 5444116 R KEGG: slo:Shew_3010 hypothetical protein; hypothetical protein complement(5443346..5444116) Shewanella sediminis HAW-EB3 5613439 YP_001476186.1 CDS Ssed_4456 NC_009831.1 5444215 5444649 D KEGG: sdn:Sden_0074 thioesterase superfamily; thioesterase superfamily protein 5444215..5444649 Shewanella sediminis HAW-EB3 5613440 YP_001476187.1 CDS Ssed_4457 NC_009831.1 5444674 5444931 D KEGG: spc:Sputcn32_0065 hypothetical protein; hypothetical protein 5444674..5444931 Shewanella sediminis HAW-EB3 5613441 YP_001476188.1 CDS Ssed_4458 NC_009831.1 5445012 5445416 R KEGG: slo:Shew_3775 thioesterase superfamily protein; thioesterase superfamily protein complement(5445012..5445416) Shewanella sediminis HAW-EB3 5613385 YP_001476189.1 CDS Ssed_4459 NC_009831.1 5445862 5447658 R KEGG: slo:Shew_3776 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(5445862..5447658) Shewanella sediminis HAW-EB3 5613386 YP_001476190.1 CDS Ssed_4460 NC_009831.1 5448143 5449744 D KEGG: slo:Shew_3780 TAP domain protein; TAP domain-containing protein 5448143..5449744 Shewanella sediminis HAW-EB3 5613387 YP_001476191.1 CDS Ssed_4461 NC_009831.1 5449737 5450471 D KEGG: slo:Shew_3781 ABC transporter-related protein; ABC transporter-like protein 5449737..5450471 Shewanella sediminis HAW-EB3 5613388 YP_001476192.1 CDS Ssed_4462 NC_009831.1 5450548 5451696 D KEGG: slo:Shew_3782 ABC-2 type transporter; ABC transporter 5450548..5451696 Shewanella sediminis HAW-EB3 5613242 YP_001476193.1 CDS Ssed_4463 NC_009831.1 5451956 5453614 R KEGG: shn:Shewana3_3611 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5451956..5453614) Shewanella sediminis HAW-EB3 5613243 YP_001476194.1 CDS mogA NC_009831.1 5453919 5454452 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(5453919..5454452) Shewanella sediminis HAW-EB3 5613244 YP_001476195.1 CDS Ssed_4465 NC_009831.1 5454623 5455075 R KEGG: shn:Shewana3_0063 NLP/P60 protein; NLP/P60 protein complement(5454623..5455075) Shewanella sediminis HAW-EB3 5613245 YP_001476196.1 CDS Ssed_4466 NC_009831.1 5455081 5456265 R KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein complement(5455081..5456265) Shewanella sediminis HAW-EB3 5613004 YP_001476197.1 CDS gpsA NC_009831.1 5456396 5457412 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(5456396..5457412) Shewanella sediminis HAW-EB3 5613005 YP_001476198.1 CDS Ssed_4468 NC_009831.1 5457533 5458021 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(5457533..5458021) Shewanella sediminis HAW-EB3 5613006 YP_001476199.1 CDS Ssed_4469 NC_009831.1 5458250 5458684 R KEGG: slo:Shew_3805 rhodanese domain protein; rhodanese domain-containing protein complement(5458250..5458684) Shewanella sediminis HAW-EB3 5613007 YP_001476200.1 CDS Ssed_4470 NC_009831.1 5458925 5460469 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5458925..5460469 Shewanella sediminis HAW-EB3 5613152 YP_001476201.1 CDS Ssed_4471 NC_009831.1 5460480 5461613 D KEGG: slo:Shew_3807 peptidase M23B; peptidase M23B 5460480..5461613 Shewanella sediminis HAW-EB3 5613153 YP_001476202.1 CDS Ssed_4472 NC_009831.1 5461647 5462852 D KEGG: slo:Shew_3808 carboxyl-terminal protease; C-terminal processing peptidase 5461647..5462852 Shewanella sediminis HAW-EB3 5613154 YP_001476203.1 CDS Ssed_4473 NC_009831.1 5462886 5463647 D KEGG: slo:Shew_3809 protein of unknown function DUF610, YibQ; hypothetical protein 5462886..5463647 Shewanella sediminis HAW-EB3 5613155 YP_001476204.1 CDS Ssed_4474 NC_009831.1 5463718 5464173 R KEGG: sbl:Sbal_4336 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(5463718..5464173) Shewanella sediminis HAW-EB3 5612864 YP_001476205.1 CDS Ssed_4475 NC_009831.1 5464196 5464447 R KEGG: shm:Shewmr7_0038 protein of unknown function UPF0153; hypothetical protein complement(5464196..5464447) Shewanella sediminis HAW-EB3 5612865 YP_001476206.1 CDS Ssed_4476 NC_009831.1 5478248 5479687 R KEGG: slo:Shew_3812 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(5478248..5479687) Shewanella sediminis HAW-EB3 5612796 YP_001476207.1 CDS Ssed_4477 NC_009831.1 5479778 5480131 D KEGG: slo:Shew_3813 hypothetical protein; hypothetical protein 5479778..5480131 Shewanella sediminis HAW-EB3 5612867 YP_001476208.1 CDS Ssed_4478 NC_009831.1 5480254 5481159 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 5480254..5481159 Shewanella sediminis HAW-EB3 5612957 YP_001476209.1 CDS Ssed_4479 NC_009831.1 5481377 5481583 D KEGG: sbl:Sbal_4341 hypothetical protein; hypothetical protein 5481377..5481583 Shewanella sediminis HAW-EB3 5612958 YP_001476210.1 CDS Ssed_4480 NC_009831.1 5481783 5482856 D KEGG: sfr:Sfri_3878 integrase, catalytic region; integrase, catalytic region 5481783..5482856 Shewanella sediminis HAW-EB3 5612959 YP_001476211.1 CDS Ssed_4481 NC_009831.1 5483097 5484926 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5483097..5484926) Shewanella sediminis HAW-EB3 5612960 YP_001476212.1 CDS Ssed_4482 NC_009831.1 5484991 5485761 R KEGG: shw:Sputw3181_4049 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(5484991..5485761) Shewanella sediminis HAW-EB3 5612654 YP_001476213.1 CDS Ssed_4483 NC_009831.1 5485952 5488090 R KEGG: slo:Shew_3841 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5485952..5488090) Shewanella sediminis HAW-EB3 5612655 YP_001476214.1 CDS Ssed_4484 NC_009831.1 5488320 5489687 R KEGG: slo:Shew_3842 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(5488320..5489687) Shewanella sediminis HAW-EB3 5612656 YP_001476215.1 CDS atpC NC_009831.1 5489883 5490311 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5489883..5490311) Shewanella sediminis HAW-EB3 5612657 YP_001476216.1 CDS Ssed_4486 NC_009831.1 5490371 5491747 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5490371..5491747) Shewanella sediminis HAW-EB3 5612616 YP_001476217.1 CDS Ssed_4487 NC_009831.1 5491783 5492643 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5491783..5492643) Shewanella sediminis HAW-EB3 5612617 YP_001476218.1 CDS Ssed_4488 NC_009831.1 5492691 5494232 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5492691..5494232) Shewanella sediminis HAW-EB3 5612618 YP_001476219.1 CDS Ssed_4489 NC_009831.1 5494247 5494780 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(5494247..5494780) Shewanella sediminis HAW-EB3 5612619 YP_001476220.1 CDS Ssed_4490 NC_009831.1 5494797 5495267 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5494797..5495267) Shewanella sediminis HAW-EB3 5612566 YP_001476221.1 CDS Ssed_4491 NC_009831.1 5495305 5495556 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5495305..5495556) Shewanella sediminis HAW-EB3 5612567 YP_001476222.1 CDS Ssed_4492 NC_009831.1 5495623 5496417 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5495623..5496417) Shewanella sediminis HAW-EB3 5612568 YP_001476223.1 CDS Ssed_4493 NC_009831.1 5496421 5496813 R KEGG: slo:Shew_3852 ATP synthase I chain; ATP synthase I chain complement(5496421..5496813) Shewanella sediminis HAW-EB3 5612569 YP_001476224.1 CDS Ssed_4494 NC_009831.1 5497040 5497924 R KEGG: saz:Sama_3652 ParB family protein; ParB family protein complement(5497040..5497924) Shewanella sediminis HAW-EB3 5612513 YP_001476225.1 CDS Ssed_4495 NC_009831.1 5497940 5498728 R KEGG: slo:Shew_3854 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(5497940..5498728) Shewanella sediminis HAW-EB3 5612514 YP_001476226.1 CDS gidB NC_009831.1 5498819 5499439 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(5498819..5499439) Shewanella sediminis HAW-EB3 5612515 YP_001476227.1 CDS Ssed_4497 NC_009831.1 5499562 5501460 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5499562..5501460) Shewanella sediminis HAW-EB3 5612534 YP_001476228.1 CDS Ssed_4498 NC_009831.1 5501921 5502361 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(5501921..5502361) Shewanella sediminis HAW-EB3 5612535 YP_001476229.1 CDS Ssed_4499 NC_009831.1 5502592 5503392 R KEGG: slo:Shew_3858 ubiquinone biosynthesis O-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(5502592..5503392) Shewanella sediminis HAW-EB3 5612536 YP_001476230.1 CDS Ssed_4500 NC_009831.1 5503606 5505009 R KEGG: ppr:PBPRB1866 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(5503606..5505009) Shewanella sediminis HAW-EB3 5612537 YP_001476231.1 CDS Ssed_4501 NC_009831.1 5505656 5506300 R KEGG: sfr:Sfri_3118 lysine exporter protein (LysE/YggA); lysine exporter protein (LysE/YggA) complement(5505656..5506300) Shewanella sediminis HAW-EB3 5612489 YP_001476232.1 CDS Ssed_4502 NC_009831.1 5507251 5508180 D KEGG: cps:CPS_2413 SEC-C motif domain protein; hypothetical protein 5507251..5508180 Shewanella sediminis HAW-EB3 5612490 YP_001476233.1 CDS Ssed_4503 NC_009831.1 5508547 5511705 R KEGG: sbl:Sbal_0362 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit complement(5508547..5511705) Shewanella sediminis HAW-EB3 5612491 YP_001476234.1 CDS Ssed_4504 NC_009831.1 5511838 5512245 D KEGG: she:Shewmr4_3199 hypothetical protein; hypothetical protein 5511838..5512245 Shewanella sediminis HAW-EB3 5612492 YP_001476235.1 CDS Ssed_4505 NC_009831.1 5512216 5512482 R hypothetical protein complement(5512216..5512482) Shewanella sediminis HAW-EB3 5612435 YP_001476236.1 CDS Ssed_4506 NC_009831.1 5512518 5513615 R KEGG: spc:Sputcn32_3625 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(5512518..5513615) Shewanella sediminis HAW-EB3 5612436 YP_001476237.1 CDS Ssed_4507 NC_009831.1 5513867 5514634 D KEGG: sfr:Sfri_3844 hypothetical protein; hypothetical protein 5513867..5514634 Shewanella sediminis HAW-EB3 5612437 YP_001476238.1 CDS Ssed_4508 NC_009831.1 5514650 5517292 D KEGG: vpa:VP1259 ATP-dependent helicase; ATP-dependent helicase 5514650..5517292 Shewanella sediminis HAW-EB3 5612438 Ssed_R0011 tRNA Ssed_R0011 NC_009831.1 493117 493193 D tRNA-Ile 493117..493193 Shewanella sediminis HAW-EB3 5611949 Ssed_R0012 tRNA Ssed_R0012 NC_009831.1 493264 493339 D tRNA-Ala 493264..493339 Shewanella sediminis HAW-EB3 5611807 Ssed_R0018 tRNA Ssed_R0018 NC_009831.1 503973 504048 D tRNA-Thr 503973..504048 Shewanella sediminis HAW-EB3 5611737 Ssed_R0023 tRNA Ssed_R0023 NC_009831.1 628361 628451 D tRNA-Ser 628361..628451 Shewanella sediminis HAW-EB3 5612304 Ssed_R0024 tRNA Ssed_R0024 NC_009831.1 937820 937895 D tRNA-Gly 937820..937895 Shewanella sediminis HAW-EB3 5613922 Ssed_R0025 tRNA Ssed_R0025 NC_009831.1 937947 938022 D tRNA-Gly 937947..938022 Shewanella sediminis HAW-EB3 5611643 Ssed_R0026 tRNA Ssed_R0026 NC_009831.1 938037 938112 D tRNA-Gly 938037..938112 Shewanella sediminis HAW-EB3 5611563 Ssed_R0027 tRNA Ssed_R0027 NC_009831.1 938127 938202 D tRNA-Gly 938127..938202 Shewanella sediminis HAW-EB3 5611480 Ssed_R0028 tRNA Ssed_R0028 NC_009831.1 1272823 1272899 R tRNA-Met complement(1272823..1272899) Shewanella sediminis HAW-EB3 5613021 Ssed_R0029 tRNA Ssed_R0029 NC_009831.1 1449742 1449817 R tRNA-Thr complement(1449742..1449817) Shewanella sediminis HAW-EB3 5611312 Ssed_R0030 tRNA Ssed_R0030 NC_009831.1 1449858 1449933 R tRNA-Phe complement(1449858..1449933) Shewanella sediminis HAW-EB3 5610994 Ssed_R0031 tRNA Ssed_R0031 NC_009831.1 1450602 1450677 R tRNA-Thr complement(1450602..1450677) Shewanella sediminis HAW-EB3 5611093 Ssed_R0032 tRNA Ssed_R0032 NC_009831.1 1450718 1450793 R tRNA-Phe complement(1450718..1450793) Shewanella sediminis HAW-EB3 5611094 Ssed_R0033 tRNA Ssed_R0033 NC_009831.1 1569189 1569280 D tRNA-Ser 1569189..1569280 Shewanella sediminis HAW-EB3 5610093 Ssed_R0034 tRNA Ssed_R0034 NC_009831.1 1569303 1569379 D tRNA-Arg 1569303..1569379 Shewanella sediminis HAW-EB3 5610823 Ssed_R0035 tRNA Ssed_R0035 NC_009831.1 1569415 1569491 D tRNA-Arg 1569415..1569491 Shewanella sediminis HAW-EB3 5611151 Ssed_R0036 tRNA Ssed_R0036 NC_009831.1 1569526 1569602 D tRNA-Arg 1569526..1569602 Shewanella sediminis HAW-EB3 5611152 Ssed_R0037 tRNA Ssed_R0037 NC_009831.1 1569678 1569754 D tRNA-Arg 1569678..1569754 Shewanella sediminis HAW-EB3 5611218 Ssed_R0038 tRNA Ssed_R0038 NC_009831.1 1569777 1569868 D tRNA-Ser 1569777..1569868 Shewanella sediminis HAW-EB3 5611219 Ssed_R0039 tRNA Ssed_R0039 NC_009831.1 1569993 1570069 D tRNA-Arg 1569993..1570069 Shewanella sediminis HAW-EB3 5611358 Ssed_R0040 tRNA Ssed_R0040 NC_009831.1 1570115 1570191 D tRNA-Arg 1570115..1570191 Shewanella sediminis HAW-EB3 5613608 Ssed_R0041 tRNA Ssed_R0041 NC_009831.1 1570281 1570357 D tRNA-Arg 1570281..1570357 Shewanella sediminis HAW-EB3 5613609 Ssed_R0042 tRNA Ssed_R0042 NC_009831.1 1570404 1570480 D tRNA-Arg 1570404..1570480 Shewanella sediminis HAW-EB3 5610235 Ssed_R0043 tRNA Ssed_R0043 NC_009831.1 1570569 1570645 D tRNA-Arg 1570569..1570645 Shewanella sediminis HAW-EB3 5610236 Ssed_R0044 tRNA Ssed_R0044 NC_009831.1 1570667 1570758 D tRNA-Ser 1570667..1570758 Shewanella sediminis HAW-EB3 5610350 Ssed_R0046 tRNA Ssed_R0046 NC_009831.1 1838054 1838130 D tRNA-Pro 1838054..1838130 Shewanella sediminis HAW-EB3 5612125 Ssed_R0047 tRNA Ssed_R0047 NC_009831.1 1838221 1838297 D tRNA-Arg 1838221..1838297 Shewanella sediminis HAW-EB3 5610281 Ssed_R0048 tRNA Ssed_R0048 NC_009831.1 1838306 1838381 D tRNA-His 1838306..1838381 Shewanella sediminis HAW-EB3 5610604 Ssed_R0051 tRNA Ssed_R0051 NC_009831.1 2147817 2147893 D tRNA-Ile 2147817..2147893 Shewanella sediminis HAW-EB3 5611725 Ssed_R0052 tRNA Ssed_R0052 NC_009831.1 2148047 2148122 D tRNA-Ala 2148047..2148122 Shewanella sediminis HAW-EB3 5611904 Ssed_R0055 tRNA Ssed_R0055 NC_009831.1 2179302 2179378 R tRNA-Pro complement(2179302..2179378) Shewanella sediminis HAW-EB3 5612562 Ssed_R0056 tRNA Ssed_R0056 NC_009831.1 2236549 2236624 D tRNA-Lys 2236549..2236624 Shewanella sediminis HAW-EB3 5611667 Ssed_R0057 tRNA Ssed_R0057 NC_009831.1 2236695 2236770 D tRNA-Lys 2236695..2236770 Shewanella sediminis HAW-EB3 5611946 Ssed_R0058 tRNA Ssed_R0058 NC_009831.1 2236886 2236961 D tRNA-Lys 2236886..2236961 Shewanella sediminis HAW-EB3 5611947 Ssed_R0059 tRNA Ssed_R0059 NC_009831.1 2237027 2237102 D tRNA-Lys 2237027..2237102 Shewanella sediminis HAW-EB3 5611957 Ssed_R0060 tRNA Ssed_R0060 NC_009831.1 2237218 2237293 D tRNA-Lys 2237218..2237293 Shewanella sediminis HAW-EB3 5611958 Ssed_R0061 tRNA Ssed_R0061 NC_009831.1 2237354 2237429 D tRNA-Lys 2237354..2237429 Shewanella sediminis HAW-EB3 5611997 Ssed_R0062 tRNA Ssed_R0062 NC_009831.1 2237624 2237699 D tRNA-Lys 2237624..2237699 Shewanella sediminis HAW-EB3 5611998 Ssed_R0063 tRNA Ssed_R0063 NC_009831.1 2237751 2237826 D tRNA-Lys 2237751..2237826 Shewanella sediminis HAW-EB3 5612002 Ssed_R0064 tRNA Ssed_R0064 NC_009831.1 2238021 2238096 D tRNA-Lys 2238021..2238096 Shewanella sediminis HAW-EB3 5612003 Ssed_R0065 tRNA Ssed_R0065 NC_009831.1 2238149 2238224 D tRNA-Lys 2238149..2238224 Shewanella sediminis HAW-EB3 5612109 Ssed_R0066 tRNA Ssed_R0066 NC_009831.1 2411914 2411990 D tRNA-Asp 2411914..2411990 Shewanella sediminis HAW-EB3 5612845 Ssed_R0067 tRNA Ssed_R0067 NC_009831.1 2412060 2412136 D tRNA-Asp 2412060..2412136 Shewanella sediminis HAW-EB3 5612433 Ssed_R0068 tRNA Ssed_R0068 NC_009831.1 2477261 2477336 R tRNA-Asn complement(2477261..2477336) Shewanella sediminis HAW-EB3 5610787 Ssed_R0069 tRNA Ssed_R0069 NC_009831.1 2477372 2477447 R tRNA-Asn complement(2477372..2477447) Shewanella sediminis HAW-EB3 5611543 Ssed_R0070 tRNA Ssed_R0070 NC_009831.1 2477476 2477551 R tRNA-Asn complement(2477476..2477551) Shewanella sediminis HAW-EB3 5612722 Ssed_R0071 tRNA Ssed_R0071 NC_009831.1 2477576 2477651 R tRNA-Asn complement(2477576..2477651) Shewanella sediminis HAW-EB3 5612723 Ssed_R0072 tRNA Ssed_R0072 NC_009831.1 2477689 2477764 R tRNA-Asn complement(2477689..2477764) Shewanella sediminis HAW-EB3 5612663 Ssed_R0073 tRNA Ssed_R0073 NC_009831.1 2477805 2477880 R tRNA-Asn complement(2477805..2477880) Shewanella sediminis HAW-EB3 5612664 Ssed_R0074 tRNA Ssed_R0074 NC_009831.1 2477933 2478008 R tRNA-Asn complement(2477933..2478008) Shewanella sediminis HAW-EB3 5614058 Ssed_R0075 tRNA Ssed_R0075 NC_009831.1 2485108 2485192 R tRNA-Tyr complement(2485108..2485192) Shewanella sediminis HAW-EB3 5611306 Ssed_R0076 tRNA Ssed_R0076 NC_009831.1 2485260 2485344 R tRNA-Tyr complement(2485260..2485344) Shewanella sediminis HAW-EB3 5613128 Ssed_R0077 tRNA Ssed_R0077 NC_009831.1 2485415 2485499 R tRNA-Tyr complement(2485415..2485499) Shewanella sediminis HAW-EB3 5609940 Ssed_R0078 tRNA Ssed_R0078 NC_009831.1 2485560 2485644 R tRNA-Tyr complement(2485560..2485644) Shewanella sediminis HAW-EB3 5609941 Ssed_R0079 tRNA Ssed_R0079 NC_009831.1 2563331 2563407 R tRNA-Val complement(2563331..2563407) Shewanella sediminis HAW-EB3 5613687 Ssed_R0080 tRNA Ssed_R0080 NC_009831.1 2563410 2563486 R tRNA-Met complement(2563410..2563486) Shewanella sediminis HAW-EB3 5614056 Ssed_R0081 tRNA Ssed_R0081 NC_009831.1 2563681 2563757 R tRNA-Val complement(2563681..2563757) Shewanella sediminis HAW-EB3 5614057 Ssed_R0082 tRNA Ssed_R0082 NC_009831.1 2563902 2563978 R tRNA-Met complement(2563902..2563978) Shewanella sediminis HAW-EB3 5613636 Ssed_R0083 tRNA Ssed_R0083 NC_009831.1 2564024 2564100 R tRNA-Met complement(2564024..2564100) Shewanella sediminis HAW-EB3 5613637 Ssed_R0084 tRNA Ssed_R0084 NC_009831.1 2564150 2564226 R tRNA-Val complement(2564150..2564226) Shewanella sediminis HAW-EB3 5613515 Ssed_R0085 tRNA Ssed_R0085 NC_009831.1 2585839 2585929 D tRNA-Ser 2585839..2585929 Shewanella sediminis HAW-EB3 5610567 Ssed_R0086 tRNA Ssed_R0086 NC_009831.1 2683689 2683774 R tRNA-Leu complement(2683689..2683774) Shewanella sediminis HAW-EB3 5612589 Ssed_R0087 tRNA Ssed_R0087 NC_009831.1 2683861 2683934 R tRNA-Cys complement(2683861..2683934) Shewanella sediminis HAW-EB3 5614190 Ssed_R0088 tRNA Ssed_R0088 NC_009831.1 2684202 2684277 R tRNA-Gly complement(2684202..2684277) Shewanella sediminis HAW-EB3 5614191 Ssed_R0089 tRNA Ssed_R0089 NC_009831.1 2684729 2684814 R tRNA-Leu complement(2684729..2684814) Shewanella sediminis HAW-EB3 5609848 Ssed_R0090 tRNA Ssed_R0090 NC_009831.1 2684901 2684974 R tRNA-Cys complement(2684901..2684974) Shewanella sediminis HAW-EB3 5609849 Ssed_R0091 tRNA Ssed_R0091 NC_009831.1 2685016 2685091 R tRNA-Gly complement(2685016..2685091) Shewanella sediminis HAW-EB3 5610088 Ssed_R0092 tRNA Ssed_R0092 NC_009831.1 2814787 2814876 D tRNA-Ser 2814787..2814876 Shewanella sediminis HAW-EB3 5611224 Ssed_R0093 tRNA Ssed_R0093 NC_009831.1 2977712 2977797 R tRNA-Leu complement(2977712..2977797) Shewanella sediminis HAW-EB3 5614214 Ssed_R0094 tRNA Ssed_R0094 NC_009831.1 2977882 2977955 R tRNA-Cys complement(2977882..2977955) Shewanella sediminis HAW-EB3 5609671 Ssed_R0095 tRNA Ssed_R0095 NC_009831.1 2977986 2978061 R tRNA-Gly complement(2977986..2978061) Shewanella sediminis HAW-EB3 5610143 Ssed_R0096 tRNA Ssed_R0096 NC_009831.1 2981892 2981982 R tRNA-Ser complement(2981892..2981982) Shewanella sediminis HAW-EB3 5609619 Ssed_R0097 tRNA Ssed_R0097 NC_009831.1 2993210 2993300 R tRNA-Ser complement(2993210..2993300) Shewanella sediminis HAW-EB3 5611421 Ssed_R0098 tRNA Ssed_R0098 NC_009831.1 3002743 3002819 D tRNA-Met 3002743..3002819 Shewanella sediminis HAW-EB3 5611381 Ssed_R0099 tRNA Ssed_R0099 NC_009831.1 3002880 3002956 D tRNA-Met 3002880..3002956 Shewanella sediminis HAW-EB3 5609652 Ssed_R0100 tRNA Ssed_R0100 NC_009831.1 3003172 3003248 D tRNA-Met 3003172..3003248 Shewanella sediminis HAW-EB3 5614223 Ssed_R0101 tRNA Ssed_R0101 NC_009831.1 3003305 3003381 D tRNA-Met 3003305..3003381 Shewanella sediminis HAW-EB3 5614224 Ssed_R0102 tRNA Ssed_R0102 NC_009831.1 3003496 3003572 D tRNA-Met 3003496..3003572 Shewanella sediminis HAW-EB3 5611780 Ssed_R0103 tRNA Ssed_R0103 NC_009831.1 3511597 3511672 R tRNA-Ala complement(3511597..3511672) Shewanella sediminis HAW-EB3 5610136 Ssed_R0104 tRNA Ssed_R0104 NC_009831.1 3511712 3511787 R tRNA-Glu complement(3511712..3511787) Shewanella sediminis HAW-EB3 5614243 Ssed_R0105 tRNA Ssed_R0105 NC_009831.1 3511928 3512003 R tRNA-Glu complement(3511928..3512003) Shewanella sediminis HAW-EB3 5610395 Ssed_R0106 tRNA Ssed_R0106 NC_009831.1 3512144 3512219 R tRNA-Glu complement(3512144..3512219) Shewanella sediminis HAW-EB3 5610396 Ssed_R0107 tRNA Ssed_R0107 NC_009831.1 3512360 3512435 R tRNA-Glu complement(3512360..3512435) Shewanella sediminis HAW-EB3 5613698 Ssed_R0108 tRNA Ssed_R0108 NC_009831.1 3512576 3512651 R tRNA-Glu complement(3512576..3512651) Shewanella sediminis HAW-EB3 5613699 Ssed_R0109 tRNA Ssed_R0109 NC_009831.1 3512754 3512829 R tRNA-Glu complement(3512754..3512829) Shewanella sediminis HAW-EB3 5609601 Ssed_R0110 tRNA Ssed_R0110 NC_009831.1 3512932 3513007 R tRNA-Glu complement(3512932..3513007) Shewanella sediminis HAW-EB3 5609602 Ssed_R0111 tRNA Ssed_R0111 NC_009831.1 3513110 3513185 R tRNA-Glu complement(3513110..3513185) Shewanella sediminis HAW-EB3 5613067 Ssed_R0112 tRNA Ssed_R0112 NC_009831.1 3513288 3513363 R tRNA-Glu complement(3513288..3513363) Shewanella sediminis HAW-EB3 5613068 Ssed_R0113 tRNA Ssed_R0113 NC_009831.1 3513466 3513541 R tRNA-Glu complement(3513466..3513541) Shewanella sediminis HAW-EB3 5614008 Ssed_R0114 tRNA Ssed_R0114 NC_009831.1 3513688 3513763 R tRNA-Ala complement(3513688..3513763) Shewanella sediminis HAW-EB3 5610568 Ssed_R0115 tRNA Ssed_R0115 NC_009831.1 3515598 3515673 D tRNA-Val 3515598..3515673 Shewanella sediminis HAW-EB3 5610137 Ssed_R0116 tRNA Ssed_R0116 NC_009831.1 3515721 3515796 D tRNA-Val 3515721..3515796 Shewanella sediminis HAW-EB3 5611208 Ssed_R0117 tRNA Ssed_R0117 NC_009831.1 3515834 3515909 D tRNA-Val 3515834..3515909 Shewanella sediminis HAW-EB3 5611209 Ssed_R0118 tRNA Ssed_R0118 NC_009831.1 3515947 3516022 D tRNA-Val 3515947..3516022 Shewanella sediminis HAW-EB3 5610397 Ssed_R0119 tRNA Ssed_R0119 NC_009831.1 3516060 3516135 D tRNA-Val 3516060..3516135 Shewanella sediminis HAW-EB3 5610398 Ssed_R0120 tRNA Ssed_R0120 NC_009831.1 3516173 3516248 D tRNA-Val 3516173..3516248 Shewanella sediminis HAW-EB3 5610544 Ssed_R0121 tRNA Ssed_R0121 NC_009831.1 3516286 3516361 D tRNA-Val 3516286..3516361 Shewanella sediminis HAW-EB3 5610545 Ssed_R0122 tRNA Ssed_R0122 NC_009831.1 3516399 3516474 D tRNA-Val 3516399..3516474 Shewanella sediminis HAW-EB3 5610163 Ssed_R0123 tRNA Ssed_R0123 NC_009831.1 3516512 3516587 D tRNA-Val 3516512..3516587 Shewanella sediminis HAW-EB3 5610164 Ssed_R0124 tRNA Ssed_R0124 NC_009831.1 3733990 3734065 D tRNA-Arg 3733990..3734065 Shewanella sediminis HAW-EB3 5613071 Ssed_R0125 tRNA Ssed_R0125 NC_009831.1 4134579 4134655 R tRNA-Met complement(4134579..4134655) Shewanella sediminis HAW-EB3 5610091 Ssed_R0126 tRNA Ssed_R0126 NC_009831.1 4134759 4134845 R tRNA-Leu complement(4134759..4134845) Shewanella sediminis HAW-EB3 5611254 Ssed_R0127 tRNA Ssed_R0127 NC_009831.1 4220684 4220758 R tRNA-Gln complement(4220684..4220758) Shewanella sediminis HAW-EB3 5613551 Ssed_R0128 tRNA Ssed_R0128 NC_009831.1 4220782 4220866 R tRNA-Leu complement(4220782..4220866) Shewanella sediminis HAW-EB3 5611586 Ssed_R0129 tRNA Ssed_R0129 NC_009831.1 4220973 4221047 R tRNA-Gln complement(4220973..4221047) Shewanella sediminis HAW-EB3 5609818 Ssed_R0130 tRNA Ssed_R0130 NC_009831.1 4221098 4221182 R tRNA-Leu complement(4221098..4221182) Shewanella sediminis HAW-EB3 5609819 Ssed_R0131 tRNA Ssed_R0131 NC_009831.1 4221276 4221352 R tRNA-Met complement(4221276..4221352) Shewanella sediminis HAW-EB3 5609653 Ssed_R0132 tRNA Ssed_R0132 NC_009831.1 4221370 4221444 R tRNA-Gln complement(4221370..4221444) Shewanella sediminis HAW-EB3 5609654 Ssed_R0133 tRNA Ssed_R0133 NC_009831.1 4221495 4221579 R tRNA-Leu complement(4221495..4221579) Shewanella sediminis HAW-EB3 5609581 Ssed_R0134 tRNA Ssed_R0134 NC_009831.1 4221701 4221777 R tRNA-Met complement(4221701..4221777) Shewanella sediminis HAW-EB3 5609582 Ssed_R0135 tRNA Ssed_R0135 NC_009831.1 4252089 4252165 R tRNA-Trp complement(4252089..4252165) Shewanella sediminis HAW-EB3 5612719 Ssed_R0139 tRNA Ssed_R0139 NC_009831.1 4266677 4266752 D tRNA-Phe 4266677..4266752 Shewanella sediminis HAW-EB3 5612675 Ssed_R0140 tRNA Ssed_R0140 NC_009831.1 4536925 4537011 D tRNA-Leu 4536925..4537011 Shewanella sediminis HAW-EB3 5611546 Ssed_R0141 tRNA Ssed_R0141 NC_009831.1 4901077 4901161 R tRNA-Leu complement(4901077..4901161) Shewanella sediminis HAW-EB3 5611149 Ssed_R0142 tRNA Ssed_R0142 NC_009831.1 5093479 5093555 R tRNA-Pro complement(5093479..5093555) Shewanella sediminis HAW-EB3 5612724 Ssed_R0143 tRNA Ssed_R0143 NC_009831.1 5093605 5093681 R tRNA-Pro complement(5093605..5093681) Shewanella sediminis HAW-EB3 5610378 Ssed_R0144 tRNA Ssed_R0144 NC_009831.1 5093730 5093805 R tRNA-His complement(5093730..5093805) Shewanella sediminis HAW-EB3 5609633 Ssed_R0145 tRNA Ssed_R0145 NC_009831.1 5093851 5093927 R tRNA-Arg complement(5093851..5093927) Shewanella sediminis HAW-EB3 5609634 Ssed_R0150 tRNA Ssed_R0150 NC_009831.1 5303338 5303411 R tRNA-Gly complement(5303338..5303411) Shewanella sediminis HAW-EB3 5610494 Ssed_R0151 tRNA Ssed_R0151 NC_009831.1 5303447 5303531 R tRNA-Tyr complement(5303447..5303531) Shewanella sediminis HAW-EB3 5609758 Ssed_R0152 tRNA Ssed_R0152 NC_009831.1 5303539 5303614 R tRNA-Thr complement(5303539..5303614) Shewanella sediminis HAW-EB3 5610896 Ssed_R0153 tRNA Ssed_R0153 NC_009831.1 5307324 5307400 R tRNA-Asp complement(5307324..5307400) Shewanella sediminis HAW-EB3 5610497 Ssed_R0156 tRNA Ssed_R0156 NC_009831.1 5310997 5311072 R tRNA-Ala complement(5310997..5311072) Shewanella sediminis HAW-EB3 5613069 Ssed_R0157 tRNA Ssed_R0157 NC_009831.1 5311143 5311219 R tRNA-Ile complement(5311143..5311219) Shewanella sediminis HAW-EB3 5613070 Ssed_R0159 tRNA Ssed_R0159 NC_009831.1 5465541 5465617 R tRNA-Asp complement(5465541..5465617) Shewanella sediminis HAW-EB3 5612866 Ssed_R0001 rRNA Ssed_R0001 NC_009831.1 51967 53501 D 16S ribosomal RNA 51967..53501 Shewanella sediminis HAW-EB3 5612500 Ssed_R0002 rRNA Ssed_R0002 NC_009831.1 53841 56736 D 23S ribosomal RNA 53841..56736 Shewanella sediminis HAW-EB3 5612155 Ssed_R0003 rRNA Ssed_R0003 NC_009831.1 56874 56989 D 5S ribosomal RNA 56874..56989 Shewanella sediminis HAW-EB3 5612156 Ssed_R0004 rRNA Ssed_R0004 NC_009831.1 318985 320519 D 16S ribosomal RNA 318985..320519 Shewanella sediminis HAW-EB3 5610443 Ssed_R0005 rRNA Ssed_R0005 NC_009831.1 320850 323745 D 23S ribosomal RNA 320850..323745 Shewanella sediminis HAW-EB3 5612067 Ssed_R0006 rRNA Ssed_R0006 NC_009831.1 323884 323999 D 5S ribosomal RNA 323884..323999 Shewanella sediminis HAW-EB3 5612195 Ssed_R0007 rRNA Ssed_R0007 NC_009831.1 325699 327233 D 16S ribosomal RNA 325699..327233 Shewanella sediminis HAW-EB3 5612196 Ssed_R0008 rRNA Ssed_R0008 NC_009831.1 327564 330459 D 23S ribosomal RNA 327564..330459 Shewanella sediminis HAW-EB3 5611831 Ssed_R0009 rRNA Ssed_R0009 NC_009831.1 330598 330713 D 5S ribosomal RNA 330598..330713 Shewanella sediminis HAW-EB3 5611832 Ssed_R0010 rRNA Ssed_R0010 NC_009831.1 491508 493042 D 16S ribosomal RNA 491508..493042 Shewanella sediminis HAW-EB3 5614108 Ssed_R0013 rRNA Ssed_R0013 NC_009831.1 493682 496577 D 23S ribosomal RNA 493682..496577 Shewanella sediminis HAW-EB3 5611808 Ssed_R0014 rRNA Ssed_R0014 NC_009831.1 496718 496833 D 5S ribosomal RNA 496718..496833 Shewanella sediminis HAW-EB3 5611753 Ssed_R0015 rRNA Ssed_R0015 NC_009831.1 498850 500384 D 16S ribosomal RNA 498850..500384 Shewanella sediminis HAW-EB3 5611754 Ssed_R0016 rRNA Ssed_R0016 NC_009831.1 500734 503629 D 23S ribosomal RNA 500734..503629 Shewanella sediminis HAW-EB3 5611739 Ssed_R0017 rRNA Ssed_R0017 NC_009831.1 503768 503883 D 5S ribosomal RNA 503768..503883 Shewanella sediminis HAW-EB3 5611740 Ssed_R0019 rRNA Ssed_R0019 NC_009831.1 504068 504183 D 5S ribosomal RNA 504068..504183 Shewanella sediminis HAW-EB3 5611738 Ssed_R0020 rRNA Ssed_R0020 NC_009831.1 505889 507423 D 16S ribosomal RNA 505889..507423 Shewanella sediminis HAW-EB3 5611681 Ssed_R0021 rRNA Ssed_R0021 NC_009831.1 507763 510658 D 23S ribosomal RNA 507763..510658 Shewanella sediminis HAW-EB3 5611682 Ssed_R0022 rRNA Ssed_R0022 NC_009831.1 510797 510912 D 5S ribosomal RNA 510797..510912 Shewanella sediminis HAW-EB3 5611671 Ssed_R0050 rRNA Ssed_R0050 NC_009831.1 2146027 2147561 D 16S ribosomal RNA 2146027..2147561 Shewanella sediminis HAW-EB3 5610664 Ssed_R0053 rRNA Ssed_R0053 NC_009831.1 2148648 2151543 D 23S ribosomal RNA 2148648..2151543 Shewanella sediminis HAW-EB3 5611905 Ssed_R0054 rRNA Ssed_R0054 NC_009831.1 2151655 2151770 D 5S ribosomal RNA 2151655..2151770 Shewanella sediminis HAW-EB3 5611774 Ssed_R0136 rRNA Ssed_R0136 NC_009831.1 4253454 4253569 R 5S ribosomal RNA complement(4253454..4253569) Shewanella sediminis HAW-EB3 5610238 Ssed_R0137 rRNA Ssed_R0137 NC_009831.1 4253708 4256603 R 23S ribosomal RNA complement(4253708..4256603) Shewanella sediminis HAW-EB3 5610251 Ssed_R0138 rRNA Ssed_R0138 NC_009831.1 4256952 4258488 R 16S ribosomal RNA complement(4256952..4258488) Shewanella sediminis HAW-EB3 5610252 Ssed_R0147 rRNA Ssed_R0147 NC_009831.1 5255523 5255638 R 5S ribosomal RNA complement(5255523..5255638) Shewanella sediminis HAW-EB3 5612018 Ssed_R0148 rRNA Ssed_R0148 NC_009831.1 5255750 5258645 R 23S ribosomal RNA complement(5255750..5258645) Shewanella sediminis HAW-EB3 5610011 Ssed_R0149 rRNA Ssed_R0149 NC_009831.1 5258985 5260519 R 16S ribosomal RNA complement(5258985..5260519) Shewanella sediminis HAW-EB3 5610012 Ssed_R0154 rRNA Ssed_R0154 NC_009831.1 5307505 5307620 R 5S ribosomal RNA complement(5307505..5307620) Shewanella sediminis HAW-EB3 5610831 Ssed_R0155 rRNA Ssed_R0155 NC_009831.1 5307759 5310654 R 23S ribosomal RNA complement(5307759..5310654) Shewanella sediminis HAW-EB3 5610832 Ssed_R0158 rRNA Ssed_R0158 NC_009831.1 5311294 5312828 R 16S ribosomal RNA complement(5311294..5312828) Shewanella sediminis HAW-EB3 5610210 Ssed_R0160 rRNA Ssed_R0160 NC_009831.1 5465730 5465845 R 5S ribosomal RNA complement(5465730..5465845) Shewanella sediminis HAW-EB3 5612829 Ssed_R0161 rRNA Ssed_R0161 NC_009831.1 5465984 5468879 R 23S ribosomal RNA complement(5465984..5468879) Shewanella sediminis HAW-EB3 5612884 Ssed_R0162 rRNA Ssed_R0162 NC_009831.1 5469219 5470753 R 16S ribosomal RNA complement(5469219..5470753) Shewanella sediminis HAW-EB3 5612885 Ssed_R0163 rRNA Ssed_R0163 NC_009831.1 5472481 5472596 R 5S ribosomal RNA complement(5472481..5472596) Shewanella sediminis HAW-EB3 5612676 Ssed_R0164 rRNA Ssed_R0164 NC_009831.1 5472742 5475640 R 23S ribosomal RNA complement(5472742..5475640) Shewanella sediminis HAW-EB3 5612677 Ssed_R0165 rRNA Ssed_R0165 NC_009831.1 5476002 5477536 R 16S ribosomal RNA complement(5476002..5477536) Shewanella sediminis HAW-EB3 5612795