-- dump date   	20140620_065325
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
198214000001	bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional; Region: thrA; PRK09436
198214000002	AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli...; Region: AAK_AK-HSDH; cd04257
198214000003	putative catalytic residues [active]
198214000004	putative nucleotide binding site [chemical binding]; other site
198214000005	putative aspartate binding site [chemical binding]; other site
198214000006	ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH); Region: ACT_AKi-HSDH-ThrA-like_1; cd04921
198214000007	dimer interface [polypeptide binding]; other site
198214000008	putative threonine allosteric regulatory site; other site
198214000009	ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH); Region: ACT_AKi-HSDH-ThrA_2; cd04922
198214000010	putative threonine allosteric regulatory site; other site
198214000011	Homoserine dehydrogenase, NAD binding domain; Region: NAD_binding_3; pfam03447
198214000012	Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742
198214000013	homoserine kinase; Region: thrB; TIGR00191
198214000014	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
198214000015	GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544
198214000016	threonine synthase; Validated; Region: PRK09225
198214000017	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
198214000018	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214000019	catalytic residue [active]
198214000020	Protein of unknown function (DUF2502); Region: DUF2502; pfam10697
198214000021	hypothetical protein; Validated; Region: PRK02101
198214000022	Similar to Escherichia coli K12 inner membrane transport protein gi: 1786188 (477 aa). BLAST with identity of 98% in 476 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214000023	transaldolase-like protein; Provisional; Region: PTZ00411
198214000024	Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957
198214000025	active site
198214000026	dimer interface [polypeptide binding]; other site
198214000027	catalytic residue [active]
198214000028	MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea; Region: MogA_MoaB; cd00886
198214000029	MPT binding site; other site
198214000030	trimer interface [polypeptide binding]; other site
198214000031	hypothetical protein; Provisional; Region: PRK10659
198214000032	hypothetical protein; Provisional; Region: PRK10236
198214000033	Domain of unknown function (DUF3944); Region: DUF3944; pfam13099
198214000034	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4735
198214000035	hypothetical protein; Provisional; Region: PRK10154
198214000036	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
198214000037	Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins; Region: HSPA9-like_NBD; cd11733
198214000038	nucleotide binding site [chemical binding]; other site
198214000039	NEF interaction site [polypeptide binding]; other site
198214000040	SBD interface [polypeptide binding]; other site
198214000041	chaperone protein DnaJ; Provisional; Region: PRK10767
198214000042	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
198214000043	HSP70 interaction site [polypeptide binding]; other site
198214000044	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
198214000045	substrate binding site [polypeptide binding]; other site
198214000046	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
198214000047	Zn binding sites [ion binding]; other site
198214000048	dimer interface [polypeptide binding]; other site
198214000049	Hok/gef family; Region: HOK_GEF; pfam01848
198214000050	pH-dependent sodium/proton antiporter; Reviewed; Region: nhaA; PRK09561
198214000051	transcriptional activator NhaR; Provisional; Region: nhaR; PRK11062
198214000052	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214000053	The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold; Region: PBP2_NhaR; cd08429
198214000054	putative dimerization interface [polypeptide binding]; other site
198214000055	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000056	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214000057	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214000058	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214000059	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
198214000060	Protein of unknown function (DUF2575); Region: DUF2575; pfam10837
198214000061	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
198214000062	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
198214000063	active site
198214000064	Riboflavin kinase; Region: Flavokinase; smart00904
198214000065	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK05743
198214000066	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
198214000067	active site
198214000068	HIGH motif; other site
198214000069	KMSKS motif; other site
198214000070	Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960
198214000071	tRNA binding surface [nucleotide binding]; other site
198214000072	anticodon binding site; other site
198214000073	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
198214000074	lipoprotein signal peptidase; Reviewed; Region: lspA; PRK00376
198214000075	FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK15095
198214000076	FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047
198214000077	FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK15095
198214000078	FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047
198214000079	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Region: lytB_ispH; cd13944
198214000080	Fe-S cluster binding site [ion binding]; other site
198214000081	substrate binding site [chemical binding]; other site
198214000082	catalytic site [active]
198214000083	nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the...; Region: nuc_hydro_IU_UC_XIUA; cd02651
198214000084	active site
198214000085	tetramer interface [polypeptide binding]; other site
198214000086	Dihydrodipicolinate reductase [Amino acid transport and metabolism]; Region: DapB; COG0289
198214000087	Dihydrodipicolinate reductase, N-terminus; Region: DapB_N; pfam01113
198214000088	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
198214000089	carbamoyl phosphate synthase small subunit; Reviewed; Region: PRK12564
198214000090	Carbamoyl-phosphate synthase small chain, CPSase domain; Region: CPSase_sm_chain; smart01097
198214000091	Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; Region: GATase1_CPSase; cd01744
198214000092	catalytic site [active]
198214000093	subunit interface [polypeptide binding]; other site
198214000094	carbamoyl phosphate synthase large subunit; Reviewed; Region: carB; PRK05294
198214000095	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
198214000096	Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; pfam02786
198214000097	Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Region: CPSase_L_D3; smart01096
198214000098	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
198214000099	ATP-grasp domain; Region: ATP-grasp_4; cl17255
198214000100	Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways...; Region: MGS_CPS_II; cd01424
198214000101	IMP binding site; other site
198214000102	dimer interface [polypeptide binding]; other site
198214000103	interdomain contacts; other site
198214000104	partial ornithine binding site; other site
198214000105	DNA-binding transcriptional activator CaiF; Provisional; Region: PRK11476
198214000106	carnitine operon protein CaiE; Provisional; Region: PRK13627
198214000107	paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to...; Region: LbH_paaY_like; cd04745
198214000108	putative trimer interface [polypeptide binding]; other site
198214000109	putative metal binding site [ion binding]; other site
198214000110	carnitinyl-CoA dehydratase; Provisional; Region: PRK03580
198214000111	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
198214000112	substrate binding site [chemical binding]; other site
198214000113	oxyanion hole (OAH) forming residues; other site
198214000114	trimer interface [polypeptide binding]; other site
198214000115	putative crotonobetaine/carnitine-CoA ligase; Validated; Region: caiC; PRK08008
198214000116	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_DitJ_like; cd05934
198214000117	acyl-activating enzyme (AAE) consensus motif; other site
198214000118	putative AMP binding site [chemical binding]; other site
198214000119	putative active site [active]
198214000120	putative CoA binding site [chemical binding]; other site
198214000121	crotonobetainyl-CoA:carnitine CoA-transferase; Provisional; Region: PRK03525
198214000122	crotonobetainyl-CoA dehydrogenase; Validated; Region: PRK03354
198214000123	Acyl-CoA dehydrogenase; Region: ACAD; cd00567
198214000124	active site
198214000125	L-carnitine/gamma-butyrobetaine antiporter; Provisional; Region: PRK03356
198214000126	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714
198214000127	Ligand binding site [chemical binding]; other site
198214000128	Electron transfer flavoprotein domain; Region: ETF; pfam01012
198214000129	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
198214000130	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214000131	putative oxidoreductase FixC; Provisional; Region: PRK10157
198214000132	ferredoxin-like protein FixX; Provisional; Region: PRK15449
198214000133	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214000134	Sugar (and other) transporter; Region: Sugar_tr; pfam00083
198214000135	putative substrate translocation pore; other site
198214000136	glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional; Region: PRK00871
198214000137	glutathione-regulated potassium-efflux system protein KefC; Provisional; Region: PRK03562
198214000138	transporter, monovalent cation:proton antiporter-2 (CPA2) family; Region: 2a37; TIGR00932
198214000139	TrkA-N domain; Region: TrkA_N; pfam02254
198214000140	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cd00209
198214000141	folate binding site [chemical binding]; other site
198214000142	NADP+ binding site [chemical binding]; other site
198214000143	bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Region: apaH; TIGR00668
198214000144	Escherichia coli ApaH and related proteins, metallophosphatase domain; Region: MPP_ApaH; cd07422
198214000145	active site
198214000146	metal binding site [ion binding]; metal-binding site
198214000147	CO2+/MG2+ efflux protein ApaG; Reviewed; Region: apaG; PRK05461
198214000148	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
198214000149	4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed; Region: pdxA; PRK00232
198214000150	peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770
198214000151	SurA N-terminal domain; Region: SurA_N; pfam09312
198214000152	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
198214000153	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
198214000154	LPS assembly outer membrane complex protein LptD; Provisional; Region: PRK03761
198214000155	OstA-like protein; Region: OstA; pfam03968
198214000156	Organic solvent tolerance protein; Region: OstA_C; pfam04453
198214000157	Dna-J like membrane chaperone protein; Provisional; Region: djlA; PRK09430
198214000158	N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins; Region: terB_like_DjlA; cd07316
198214000159	putative metal binding site [ion binding]; other site
198214000160	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
198214000161	HSP70 interaction site [polypeptide binding]; other site
198214000162	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
198214000163	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
198214000164	active site
198214000165	ATP-dependent helicase HepA; Validated; Region: PRK04914
198214000166	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214000167	ATP binding site [chemical binding]; other site
198214000168	putative Mg++ binding site [ion binding]; other site
198214000169	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214000170	nucleotide binding region [chemical binding]; other site
198214000171	ATP-binding site [chemical binding]; other site
198214000172	RNA polymerase recycling family C-terminal; Region: RapA_C; pfam12137
198214000173	DNA polymerase II; Reviewed; Region: PRK05762
198214000174	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases; Region: DNA_polB_II_exo; cd05784
198214000175	active site
198214000176	catalytic site [active]
198214000177	substrate binding site [chemical binding]; other site
198214000178	DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as...; Region: POLBc_Pol_II; cd05537
198214000179	active site
198214000180	metal-binding site
198214000181	Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II); Region: Aldolase_II; cd00398
198214000182	intersubunit interface [polypeptide binding]; other site
198214000183	active site
198214000184	Zn2+ binding site [ion binding]; other site
198214000185	Similar to Escherichia coli K12 L-arabinose isomerase gi: 1786248 (501 aa). BLAST with identity of 98% in 499 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214000186	ribulokinase; Provisional; Region: PRK04123
198214000187	Ribulokinases; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_RBK; cd07781
198214000188	N- and C-terminal domain interface [polypeptide binding]; other site
198214000189	active site
198214000190	MgATP binding site [chemical binding]; other site
198214000191	catalytic site [active]
198214000192	metal binding site [ion binding]; metal-binding site
198214000193	carbohydrate binding site [chemical binding]; other site
198214000194	homodimer interface [polypeptide binding]; other site
198214000195	DNA-binding transcriptional regulator AraC; Provisional; Region: PRK10572
198214000196	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
198214000197	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214000198	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214000199	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
198214000200	thiamine transporter ATP-binding subunit; Provisional; Region: thiQ; PRK10771
198214000201	ATP-binding cassette domain of the thiamine transport system; Region: ABC_ThiQ_thiamine_transporter; cd03298
198214000202	Walker A/P-loop; other site
198214000203	ATP binding site [chemical binding]; other site
198214000204	Q-loop/lid; other site
198214000205	ABC transporter signature motif; other site
198214000206	Walker B; other site
198214000207	D-loop; other site
198214000208	H-loop/switch region; other site
198214000209	thiamine transporter membrane protein; Reviewed; Region: thiP; PRK09433
198214000210	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214000211	dimer interface [polypeptide binding]; other site
198214000212	conserved gate region; other site
198214000213	putative PBP binding loops; other site
198214000214	ABC-ATPase subunit interface; other site
198214000215	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214000216	dimer interface [polypeptide binding]; other site
198214000217	conserved gate region; other site
198214000218	putative PBP binding loops; other site
198214000219	ABC-ATPase subunit interface; other site
198214000220	thiamine transporter substrate binding subunit; Provisional; Region: tbpA; PRK11205
198214000221	transcriptional regulator SgrR; Provisional; Region: PRK13626
198214000222	Sugar transport-related sRNA regulator N-term; Region: SgrR_N; pfam12793
198214000223	The C-terminal solute-binding domain of DNA-binding transcriptional regulator SgrR is related to the ABC-type oligopeptide-binding proteins and contains the type 2 periplasmic-binding fold; Region: PBP2_SgrR_like; cd08507
198214000224	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214000225	sugar efflux transporter; Region: 2A0120; TIGR00899
198214000226	putative substrate translocation pore; other site
198214000227	Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate...; Region: IPMI_Swivel; cd01577
198214000228	substrate binding site [chemical binding]; other site
198214000229	3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583
198214000230	substrate binding site [chemical binding]; other site
198214000231	ligand binding site [chemical binding]; other site
198214000232	3-isopropylmalate dehydrogenase; Provisional; Region: PRK00772
198214000233	2-isopropylmalate synthase; Validated; Region: PRK00915
198214000234	2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; Region: DRE_TIM_IPMS; cd07940
198214000235	active site
198214000236	catalytic residues [active]
198214000237	metal binding site [ion binding]; metal-binding site
198214000238	LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; smart00917
198214000239	leu operon leader peptide; Provisional; Region: PRK09925
198214000240	leucine transcriptional activator; Reviewed; Region: leuO; PRK09508
198214000241	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214000242	The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of leucine synthesis operon, contains the type 2 periplasmic binding fold; Region: PBP2_LeuO; cd08466
198214000243	putative substrate binding pocket [chemical binding]; other site
198214000244	putative dimerization interface [polypeptide binding]; other site
198214000245	acetolactate synthase 3 catalytic subunit; Validated; Region: PRK07979
198214000246	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
198214000247	PYR/PP interface [polypeptide binding]; other site
198214000248	dimer interface [polypeptide binding]; other site
198214000249	TPP binding site [chemical binding]; other site
198214000250	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
198214000251	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
198214000252	TPP-binding site [chemical binding]; other site
198214000253	dimer interface [polypeptide binding]; other site
198214000254	acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895
198214000255	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
198214000256	putative valine binding site [chemical binding]; other site
198214000257	dimer interface [polypeptide binding]; other site
198214000258	Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369
198214000259	DNA-binding transcriptional regulator FruR; Provisional; Region: PRK11303
198214000260	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214000261	DNA binding site [nucleotide binding]
198214000262	domain linker motif; other site
198214000263	Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs; Region: PBP1_FruR; cd06274
198214000264	dimerization interface [polypeptide binding]; other site
198214000265	ligand binding site [chemical binding]; other site
198214000266	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214000267	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214000268	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214000269	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000270	mraZ protein; Region: TIGR00242
198214000271	MraZ protein; Region: MraZ; pfam02381
198214000272	MraZ protein; Region: MraZ; pfam02381
198214000273	16S rRNA m(4)C1402 methyltranserfase; Provisional; Region: PRK00050
198214000274	cell division protein FtsL; Provisional; Region: PRK10772
198214000275	peptidoglycan synthase FtsI; Provisional; Region: PRK15105
198214000276	Penicillin-binding Protein dimerization domain; Region: PBP_dimer; pfam03717
198214000277	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
198214000278	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139
198214000279	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
198214000280	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
198214000281	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
198214000282	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed; Region: murF; PRK10773
198214000283	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
198214000284	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
198214000285	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
198214000286	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
198214000287	Mg++ binding site [ion binding]; other site
198214000288	putative catalytic motif [active]
198214000289	putative substrate binding site [chemical binding]; other site
198214000290	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK03806
198214000291	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
198214000292	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
198214000293	cell division protein FtsW; Provisional; Region: PRK10774
198214000294	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726
198214000295	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
198214000296	active site
198214000297	homodimer interface [polypeptide binding]; other site
198214000298	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
198214000299	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
198214000300	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
198214000301	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
198214000302	D-alanine--D-alanine ligase; Reviewed; Region: ddl; PRK01372
198214000303	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
198214000304	D-ala D-ala ligase C-terminus; Region: Dala_Dala_lig_C; pfam07478
198214000305	cell division protein FtsQ; Provisional; Region: PRK10775
198214000306	POTRA domain, FtsQ-type; Region: POTRA_1; pfam08478
198214000307	Cell division protein FtsQ; Region: FtsQ; pfam03799
198214000308	cell division protein FtsA; Reviewed; Region: ftsA; PRK09472
198214000309	Cell division protein FtsA; Region: FtsA; pfam14450
198214000310	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214000311	Cell division protein FtsA; Region: FtsA; pfam14450
198214000312	cell division protein FtsZ; Validated; Region: PRK09330
198214000313	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
198214000314	nucleotide binding site [chemical binding]; other site
198214000315	SulA interaction site; other site
198214000316	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed; Region: lpxC; PRK13186
198214000317	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
198214000318	SecA regulator SecM; Provisional; Region: PRK02943
198214000319	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
198214000320	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
198214000321	SecA Wing and Scaffold domain; Region: SecA_SW; pfam07516
198214000322	SEC-C motif; Region: SEC-C; pfam02810
198214000323	The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425
198214000324	active site
198214000325	8-oxo-dGMP binding site [chemical binding]; other site
198214000326	nudix motif; other site
198214000327	metal binding site [ion binding]; metal-binding site
198214000328	DNA gyrase inhibitor; Reviewed; Region: PRK00418
198214000329	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4582
198214000330	Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237
198214000331	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
198214000332	CoA-binding site [chemical binding]; other site
198214000333	ATP-binding [chemical binding]; other site
198214000334	guanosine 5'-monophosphate oxidoreductase; Provisional; Region: PRK05096
198214000335	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
198214000336	active site
198214000337	type IV pilin biogenesis protein; Provisional; Region: PRK10573
198214000338	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
198214000339	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
198214000340	'Similar to Escherichia coli K12  integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake gi: 1786296 (462 aa). BLAST with identity of 97% in 382 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.'
198214000341	putative major pilin subunit; Provisional; Region: PRK10574
198214000342	prepilin-type N-terminal cleavage/methylation domain; Region: IV_pilin_GFxxxE; TIGR02532
198214000343	Pilin (bacterial filament); Region: Pilin; pfam00114
198214000344	quinolinate phosphoribosyltransferase; Validated; Region: PRK09016
198214000345	Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with...; Region: QPRTase; cd01572
198214000346	dimerization interface [polypeptide binding]; other site
198214000347	active site
198214000348	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
198214000349	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
198214000350	amidase catalytic site [active]
198214000351	Zn binding residues [ion binding]; other site
198214000352	substrate binding site [chemical binding]; other site
198214000353	regulatory protein AmpE; Provisional; Region: PRK10987
198214000354	aromatic amino acid transporter; Provisional; Region: PRK10238
198214000355	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214000356	transcriptional regulator PdhR; Reviewed; Region: pdhR; PRK09464
198214000357	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214000358	DNA-binding site [nucleotide binding]; DNA binding site
198214000359	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214000360	pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405
198214000361	Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative...; Region: TPP_E1_EcPDC_like; cd02017
198214000362	dimer interface [polypeptide binding]; other site
198214000363	TPP-binding site [chemical binding]; other site
198214000364	pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated; Region: aceF; PRK11854
198214000365	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
198214000366	E3 interaction surface; other site
198214000367	lipoyl attachment site [posttranslational modification]; other site
198214000368	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
198214000369	E3 interaction surface; other site
198214000370	lipoyl attachment site [posttranslational modification]; other site
198214000371	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
198214000372	E3 interaction surface; other site
198214000373	lipoyl attachment site [posttranslational modification]; other site
198214000374	e3 binding domain; Region: E3_binding; pfam02817
198214000375	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
198214000376	dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06467
198214000377	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214000378	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214000379	Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; Region: Pyr_redox_dim; pfam02852
198214000380	Similar to Escherichia coli K12  membrane protein gi: 1786308 (618 aa). BLAST with identity of 97% in 617 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214000381	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated; Region: PRK09238
198214000382	Aconitate B N-terminal domain; Region: Aconitase_B_N; pfam11791
198214000383	Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in...; Region: AcnB_Swivel; cd01576
198214000384	substrate binding site [chemical binding]; other site
198214000385	Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle; Region: AcnB; cd01581
198214000386	substrate binding site [chemical binding]; other site
198214000387	ligand binding site [chemical binding]; other site
198214000388	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3112
198214000389	S-adenosylmethionine decarboxylase; Provisional; Region: PRK05462
198214000390	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214000391	S-adenosylmethionine binding site [chemical binding]; other site
198214000392	Bacterial chaperone lipoprotein (PulS_OutS); Region: PulS_OutS; cl09898
198214000393	multicopper oxidase; Provisional; Region: PRK10965
198214000394	The first Cupredoxin domain of the multicopper oxidase CueO, the cell division protein FtsP, and similar proteins; Region: CuRO_1_CueO_FtsP; cd04232
198214000395	Domain 2 interface [polypeptide binding]; other site
198214000396	Domain 3 interface [polypeptide binding]; other site
198214000397	trinuclear Cu binding site [ion binding]; other site
198214000398	The second Cupredoxin domain of the multicopper oxidase CueO, the cell division protein FtsP, and similar proteins; Region: CuRO_2_CueO_FtsP; cd13867
198214000399	Domain 1 interface [polypeptide binding]; other site
198214000400	Domain 3 interface [polypeptide binding]; other site
198214000401	The third Cupredoxin domain of the multicopper oxidase CueO, the cell division protein FtsP, and similar proteins; Region: CuRO_3_CueO_FtsP; cd13890
198214000402	Domain 2 interface [polypeptide binding]; other site
198214000403	Domain 1 interface [polypeptide binding]; other site
198214000404	Type 1 (T1) Cu binding site [ion binding]; other site
198214000405	trinuclear Cu binding site [ion binding]; other site
198214000406	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214000407	active site
198214000408	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeA; cd00883
198214000409	active site clefts [active]
198214000410	zinc binding site [ion binding]; other site
198214000411	dimer interface [polypeptide binding]; other site
198214000412	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
198214000413	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
198214000414	Walker A/P-loop; other site
198214000415	ATP binding site [chemical binding]; other site
198214000416	Q-loop/lid; other site
198214000417	ABC transporter signature motif; other site
198214000418	Walker B; other site
198214000419	D-loop; other site
198214000420	H-loop/switch region; other site
198214000421	inner membrane transport permease; Provisional; Region: PRK15066
198214000422	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
198214000423	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
198214000424	active pocket/dimerization site; other site
198214000425	active site
198214000426	phosphorylation site [posttranslational modification]
198214000427	Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins; Region: CE4_yadE_5s; cd10966
198214000428	putative active site [active]
198214000429	putative metal binding site [ion binding]; other site
198214000430	Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production; Region: Asp_decarbox; cd06919
198214000431	tetramerization interface [polypeptide binding]; other site
198214000432	active site
198214000433	Uncharacterized conserved protein [Function unknown]; Region: COG5464
198214000434	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
198214000435	Pantoate-beta-alanine ligase; Region: PanC; cd00560
198214000436	active site
198214000437	ATP-binding site [chemical binding]; other site
198214000438	pantoate-binding site; other site
198214000439	HXXH motif; other site
198214000440	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
198214000441	oligomerization interface [polypeptide binding]; other site
198214000442	active site
198214000443	metal binding site [ion binding]; metal-binding site
198214000444	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000445	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
198214000446	catalytic center binding site [active]
198214000447	ATP binding site [chemical binding]; other site
198214000448	poly(A) polymerase I; Provisional; Region: pcnB; PRK11623
198214000449	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
198214000450	active site
198214000451	NTP binding site [chemical binding]; other site
198214000452	metal binding triad [ion binding]; metal-binding site
198214000453	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
198214000454	Polymerase A arginine-rich C-terminus; Region: PolyA_pol_arg_C; pfam12626
198214000455	glutamyl-Q tRNA(Asp) synthetase; Reviewed; Region: PRK05710
198214000456	tRNA synthetases class I (E and Q), catalytic domain; Region: tRNA-synt_1c; pfam00749
198214000457	active site
198214000458	nucleotide binding site [chemical binding]; other site
198214000459	HIGH motif; other site
198214000460	KMSKS motif; other site
198214000461	RNA polymerase-binding transcription factor; Provisional; Region: dksA; PRK10778
198214000462	putative DNA-binding transcriptional regulator; Reviewed; Region: PRK00347
198214000463	2'-5' RNA ligase; Provisional; Region: PRK15124
198214000464	LigT like Phosphoesterase; Region: LigT_PEase; pfam02834
198214000465	LigT like Phosphoesterase; Region: LigT_PEase; pfam02834
198214000466	ATP-dependent RNA helicase HrpB; Provisional; Region: PRK11664
198214000467	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214000468	ATP binding site [chemical binding]; other site
198214000469	putative Mg++ binding site [ion binding]; other site
198214000470	helicase superfamily c-terminal domain; Region: HELICc; smart00490
198214000471	Helicase associated domain (HA2) Add an annotation; Region: HA2; smart00847
198214000472	ATP-dependent helicase C-terminal; Region: HrpB_C; pfam08482
198214000473	bifunctional glycosyl transferase/transpeptidase; Reviewed; Region: mrcB; PRK09506
198214000474	Transmembrane domain of transglycosylase PBP1 at N-terminal; Region: PBP1_TM; pfam14812
198214000475	Bifunctional transglycosylase second domain; Region: UB2H; pfam14814
198214000476	Transglycosylase; Region: Transgly; pfam00912
198214000477	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
198214000478	ferrichrome outer membrane transporter; Provisional; Region: PRK10044
198214000479	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
198214000480	N-terminal plug; other site
198214000481	ligand-binding site [chemical binding]; other site
198214000482	iron-hydroxamate transporter ATP-binding subunit; Provisional; Region: PRK10575
198214000483	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
198214000484	Walker A/P-loop; other site
198214000485	ATP binding site [chemical binding]; other site
198214000486	Q-loop/lid; other site
198214000487	ABC transporter signature motif; other site
198214000488	Walker B; other site
198214000489	D-loop; other site
198214000490	H-loop/switch region; other site
198214000491	Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins...; Region: FhuD; cd01146
198214000492	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
198214000493	siderophore binding site; other site
198214000494	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
198214000495	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214000496	ABC-ATPase subunit  interface; other site
198214000497	dimer interface [polypeptide binding]; other site
198214000498	putative PBP binding regions; other site
198214000499	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214000500	ABC-ATPase subunit  interface; other site
198214000501	dimer interface [polypeptide binding]; other site
198214000502	putative PBP binding regions; other site
198214000503	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062
198214000504	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
198214000505	inhibitor-cofactor binding pocket; inhibition site
198214000506	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214000507	catalytic residue [active]
198214000508	ClC chloride channel EriC.  This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked...; Region: EriC; cd01031
198214000509	Cl- selectivity filter; other site
198214000510	Cl- binding residues [ion binding]; other site
198214000511	pore gating glutamate residue; other site
198214000512	dimer interface [polypeptide binding]; other site
198214000513	H+/Cl- coupling transport residue; other site
198214000514	iron-sulfur cluster insertion protein ErpA; Provisional; Region: PRK13623
198214000515	hypothetical protein; Provisional; Region: PRK10578
198214000516	UPF0126 domain; Region: UPF0126; pfam03458
198214000517	UPF0126 domain; Region: UPF0126; pfam03458
198214000518	ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG0614
198214000519	Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor...; Region: BtuF; cd01144
198214000520	cobalamin binding residues [chemical binding]; other site
198214000521	putative BtuC binding residues; other site
198214000522	dimer interface [polypeptide binding]; other site
198214000523	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated; Region: PRK05584
198214000524	serine endoprotease; Provisional; Region: PRK10942
198214000525	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
198214000526	PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
198214000527	protein binding site [polypeptide binding]; other site
198214000528	PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
198214000529	protein binding site [polypeptide binding]; other site
198214000530	'Similar to Escherichia coli O157:H7 regulator protein of D-galactarate, D-glucarate and D-glycerate metabolism  ref: NP_308193.1 (385 aa). BLAST with identity of 99% in 392 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214000531	hypothetical protein; Provisional; Region: PRK13677
198214000532	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830
198214000533	Tetrahydrodipicolinate N-succinyltransferase N-terminal; Region: THDPS_N_2; pfam14805
198214000534	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA; Region: LbH_THP_succinylT; cd03350
198214000535	trimer interface [polypeptide binding]; other site
198214000536	active site
198214000537	substrate binding site [chemical binding]; other site
198214000538	CoA binding site [chemical binding]; other site
198214000539	PII uridylyl-transferase; Provisional; Region: PRK05007
198214000540	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
198214000541	metal binding triad; other site
198214000542	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
198214000543	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
198214000544	Zn2+ binding site [ion binding]; other site
198214000545	Mg2+ binding site [ion binding]; other site
198214000546	ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_UUR-like_1; cd04900
198214000547	C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains; Region: ACT_ACR-UUR-like_2; cd04899
198214000548	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
198214000549	active site
198214000550	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
198214000551	rRNA interaction site [nucleotide binding]; other site
198214000552	S8 interaction site; other site
198214000553	putative laminin-1 binding site; other site
198214000554	elongation factor Ts; Provisional; Region: tsf; PRK09377
198214000555	UBA/TS-N domain; Region: UBA; pfam00627
198214000556	Bacterial virulence factor haemolysin; Region: SMP_2; cl11479
198214000557	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
198214000558	putative nucleotide binding site [chemical binding]; other site
198214000559	uridine monophosphate binding site [chemical binding]; other site
198214000560	homohexameric interface [polypeptide binding]; other site
198214000561	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
198214000562	hinge region; other site
198214000563	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447
198214000564	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
198214000565	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
198214000566	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
198214000567	Cis (Z)-Isoprenyl Diphosphate Synthases; Region: Cis_IPPS; cd00475
198214000568	active site
198214000569	dimer interface [polypeptide binding]; other site
198214000570	CDP-diglyceride synthase; Provisional; Region: cdsA; PRK11624
198214000571	zinc metallopeptidase RseP; Provisional; Region: PRK10779
198214000572	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
198214000573	active site
198214000574	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
198214000575	protein binding site [polypeptide binding]; other site
198214000576	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
198214000577	protein binding site [polypeptide binding]; other site
198214000578	Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020
198214000579	putative substrate binding region [chemical binding]; other site
198214000580	outer membrane protein assembly factor YaeT; Provisional; Region: PRK11067
198214000581	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214000582	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214000583	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214000584	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214000585	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214000586	Surface antigen; Region: Bac_surface_Ag; pfam01103
198214000587	periplasmic chaperone; Provisional; Region: PRK10780
198214000588	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892
198214000589	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613
198214000590	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
198214000591	trimer interface [polypeptide binding]; other site
198214000592	active site
198214000593	UDP-GlcNAc binding site [chemical binding]; other site
198214000594	lipid binding site [chemical binding]; lipid-binding site
198214000595	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
198214000596	UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289
198214000597	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
198214000598	active site
198214000599	lipid-A-disaccharide synthase; Reviewed; Region: lpxB; PRK00025
198214000600	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
198214000601	Bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
198214000602	RNA/DNA hybrid binding site [nucleotide binding]; other site
198214000603	active site
198214000604	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
198214000605	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1; Region: PHP_PolIIIA_DnaE1; cd07433
198214000606	putative active site [active]
198214000607	putative PHP Thumb interface [polypeptide binding]; other site
198214000608	Bacterial DNA polymerase III alpha subunit; Region: DNA_pol3_alpha; pfam07733
198214000609	Helix-hairpin-helix motif; Region: HHH_6; pfam14579
198214000610	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
198214000611	generic binding surface II; other site
198214000612	generic binding surface I; other site
198214000613	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated; Region: PRK05724
198214000614	lysine decarboxylase LdcC; Provisional; Region: PRK15399
198214000615	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
198214000616	Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine...; Region: Orn_deC_like; cd00615
198214000617	homodimer interface [polypeptide binding]; other site
198214000618	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214000619	catalytic residue [active]
198214000620	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
198214000621	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_1; cd08352
198214000622	putative metal binding site [ion binding]; other site
198214000623	tRNA(Ile)-lysidine synthetase; Provisional; Region: tilS; PRK10660
198214000624	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
198214000625	Ligand Binding Site [chemical binding]; other site
198214000626	TilS substrate binding domain; Region: TilS; pfam09179
198214000627	TilS substrate C-terminal domain; Region: TilS_C; pfam11734
198214000628	Rho-binding antiterminator; Provisional; Region: PRK11625
198214000629	hypothetical protein; Provisional; Region: PRK04964
198214000630	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4681
198214000631	hypothetical protein; Provisional; Region: PRK09256
198214000632	Protein chain release factor B [Translation, ribosomal structure and biogenesis]; Region: PrfB; COG1186
198214000633	lipoprotein involved with copper homeostasis and adhesion; Provisional; Region: PRK10523
198214000634	Uncharacterized lipoprotein NlpE involved in copper resistance [Cell envelope biogenesis, outer membrane / Inorganic ion transport and metabolism]; Region: CutF; COG3015
198214000635	hypothetical protein; Provisional; Region: PRK11479
198214000636	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
198214000637	prolyl-tRNA synthetase; Provisional; Region: PRK09194
198214000638	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_prok; cd00779
198214000639	dimer interface [polypeptide binding]; other site
198214000640	motif 1; other site
198214000641	active site
198214000642	motif 2; other site
198214000643	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
198214000644	putative deacylase active site [active]
198214000645	motif 3; other site
198214000646	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
198214000647	anticodon binding site; other site
198214000648	Escherichia coli YaeB and related proteins; Region: UPF0066; cd09281
198214000649	homodimer interaction site [polypeptide binding]; other site
198214000650	cofactor binding site; other site
198214000651	outer membrane lipoprotein; Reviewed; Region: rcsF; PRK10781
198214000652	DL-methionine transporter substrate-binding subunit; Provisional; Region: metQ; PRK11063
198214000653	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214000654	dimer interface [polypeptide binding]; other site
198214000655	conserved gate region; other site
198214000656	putative PBP binding loops; other site
198214000657	ABC-ATPase subunit interface; other site
198214000658	DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153
198214000659	ATP-binding cassette domain of methionine transporter; Region: ABC_MetN_methionine_transporter; cd03258
198214000660	Walker A/P-loop; other site
198214000661	ATP binding site [chemical binding]; other site
198214000662	Q-loop/lid; other site
198214000663	ABC transporter signature motif; other site
198214000664	Walker B; other site
198214000665	D-loop; other site
198214000666	H-loop/switch region; other site
198214000667	This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins; Region: NIL; smart00930
198214000668	D,D-heptose 1,7-bisphosphate phosphatase; Region: GmhB_yaeD; TIGR00213
198214000669	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214000670	active site
198214000671	motif I; other site
198214000672	motif II; other site
198214000673	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214000674	active site
198214000675	catalytic tetrad [active]
198214000676	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214000677	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214000678	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214000679	Transcriptional regulator [Transcription]; Region: LysR; COG0583
198214000680	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214000681	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA; cd08478
198214000682	putative effector binding pocket; other site
198214000683	dimerization interface [polypeptide binding]; other site
198214000684	hypothetical protein; Provisional; Region: PRK05421
198214000685	putative catalytic site [active]
198214000686	putative metal binding site [ion binding]; other site
198214000687	putative phosphate binding site [ion binding]; other site
198214000688	putative catalytic site [active]
198214000689	putative phosphate binding site [ion binding]; other site
198214000690	putative metal binding site [ion binding]; other site
198214000691	Methyltransferase domain; Region: Methyltransf_31; pfam13847
198214000692	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214000693	S-adenosylmethionine binding site [chemical binding]; other site
198214000694	membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783
198214000695	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214000696	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214000697	catalytic residue [active]
198214000698	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214000699	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214000700	hydroxyacylglutathione hydrolase; Provisional; Region: PRK10241
198214000701	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214000702	RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278
198214000703	RNA/DNA hybrid binding site [nucleotide binding]; other site
198214000704	active site
198214000705	DNA polymerase III, epsilon subunit, Proteobacterial; Region: dnaQ_proteo; TIGR01406
198214000706	DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131
198214000707	active site
198214000708	catalytic site [active]
198214000709	substrate binding site [chemical binding]; other site
198214000710	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3515
198214000711	ImpA-related N-terminal; Region: ImpA-rel_N; cl19907
198214000712	Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3519
198214000713	Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]; Region: COG3518
198214000714	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214000715	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000716	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214000717	HTH-like domain; Region: HTH_21; pfam13276
198214000718	Integrase core domain; Region: rve; pfam00665
198214000719	Integrase core domain; Region: rve_3; pfam13683
198214000720	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives [General function prediction only]; Region: COG5565
198214000721	Terminase-like family; Region: Terminase_6; pfam03237
198214000722	HemX; Region: HemX; cl19375
198214000723	Bacteriophage, scaffolding protein; Region: Phage-scaffold; pfam09306
198214000724	P22 coat protein - gene protein 5; Region: P22_CoatProtein; cl19542
198214000725	P22 tail accessory factor; Region: P22_Tail-4; pfam11650
198214000726	Phage stabilisation protein; Region: Phage_stabilize; pfam11134
198214000727	Lipoprotein leucine-zipper; Region: LPP; cl11539
198214000728	Protein of unknown function (DUF2824); Region: DUF2824; pfam11039
198214000729	Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241; Region: DM14; smart00685
198214000730	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
198214000731	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214000732	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214000733	catalytic residue [active]
198214000734	Transposase; Region: HTH_Tnp_1; cl17663
198214000735	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000736	hypothetical protein; Provisional; Region: PRK11505
198214000737	psiF repeat; Region: PsiF_repeat; pfam07769
198214000738	psiF repeat; Region: PsiF_repeat; pfam07769
198214000739	Alkaline phosphatase [Inorganic ion transport and metabolism]; Region: PhoA; COG1785
198214000740	Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH; Region: alkPPc; cd00016
198214000741	dimer interface [polypeptide binding]; other site
198214000742	active site
198214000743	anti-RssB factor; Provisional; Region: PRK10244
198214000744	D-alanyl-alanine synthetase A; Reviewed; Region: ddl; PRK01966
198214000745	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
198214000746	D-ala D-ala ligase C-terminus; Region: Dala_Dala_lig_C; pfam07478
198214000747	Protein of unknown function (DUF2754); Region: DUF2754; pfam10953
198214000748	Protein of unknown function (DUF2755); Region: DUF2755; pfam10954
198214000749	Protein of unknown function (DUF1615); Region: DUF1615; pfam07759
198214000750	microcin B17 transporter; Reviewed; Region: PRK11098
198214000751	beta-lactam binding protein AmpH; Provisional; Region: PRK10662
198214000752	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11832
198214000753	Similar to Escherichia coli K12  flagellin structural protein gi: 1786572 (468 aa). BLAST with identity of 98% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214000754	putative transposase OrfB; Reviewed; Region: PHA02517
198214000755	HTH-like domain; Region: HTH_21; pfam13276
198214000756	Integrase core domain; Region: rve; pfam00665
198214000757	Integrase core domain; Region: rve_2; pfam13333
198214000758	putative transposase OrfB; Reviewed; Region: PHA02517
198214000759	HTH-like domain; Region: HTH_21; pfam13276
198214000760	Integrase core domain; Region: rve; pfam00665
198214000761	Integrase core domain; Region: rve_3; pfam13683
198214000762	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000763	Transposase; Region: HTH_Tnp_1; pfam01527
198214000764	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214000765	HTH-like domain; Region: HTH_21; pfam13276
198214000766	Integrase core domain; Region: rve; pfam00665
198214000767	Integrase core domain; Region: rve_3; pfam13683
198214000768	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214000769	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000770	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214000771	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214000772	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214000773	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000774	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS; cd00384
198214000775	dimer interface [polypeptide binding]; other site
198214000776	active site
198214000777	Schiff base residues; other site
198214000778	Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: TauD; COG2175
198214000779	taurine dioxygenase; Reviewed; Region: tauD; PRK09553
198214000780	active site
198214000781	iron coordination sites [ion binding]; other site
198214000782	substrate binding pocket [chemical binding]; other site
198214000783	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
198214000784	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214000785	dimer interface [polypeptide binding]; other site
198214000786	conserved gate region; other site
198214000787	putative PBP binding loops; other site
198214000788	ABC-ATPase subunit interface; other site
198214000789	taurine transporter ATP-binding subunit; Provisional; Region: tauB; PRK11248
198214000790	ATP-binding cassette domain of the nitrate and sulfonate transporters; Region: ABC_NrtD_SsuB_transporters; cd03293
198214000791	Walker A/P-loop; other site
198214000792	ATP binding site [chemical binding]; other site
198214000793	Q-loop/lid; other site
198214000794	ABC transporter signature motif; other site
198214000795	Walker B; other site
198214000796	D-loop; other site
198214000797	H-loop/switch region; other site
198214000798	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
198214000799	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214000800	substrate binding pocket [chemical binding]; other site
198214000801	membrane-bound complex binding site; other site
198214000802	hinge residues; other site
198214000803	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000804	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214000805	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214000806	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214000807	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
198214000808	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786500 (71 aa). BLAST with identity of 95% in 71 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214000809	Uncharacterized conserved protein [Function unknown]; Region: COG1556
198214000810	iron-sulfur cluster-binding protein; Region: TIGR00273
198214000811	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; pfam02589
198214000812	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
198214000813	Domain of unknown function (DUF3390); Region: DUF3390; pfam11870
198214000814	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
198214000815	Cysteine-rich domain; Region: CCG; pfam02754
198214000816	Cysteine-rich domain; Region: CCG; pfam02754
198214000817	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214000818	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214000819	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214000820	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000821	Immune inhibitor A peptidase M6; Region: Peptidase_M6; cl11525
198214000822	type VI secretion system Vgr family protein; Region: VI_Rhs_Vgr; TIGR03361
198214000823	Phage late control gene D protein (GPD); Region: Phage_GPD; pfam05954
198214000824	Phage-related baseplate assembly protein; Region: Phage_base_V; pfam04717
198214000825	PAAR motif; Region: PAAR_motif; pfam05488
198214000826	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
198214000827	RHS Repeat; Region: RHS_repeat; pfam05593
198214000828	RHS Repeat; Region: RHS_repeat; pfam05593
198214000829	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
198214000830	RHS Repeat; Region: RHS_repeat; pfam05593
198214000831	RHS Repeat; Region: RHS_repeat; pfam05593
198214000832	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
198214000833	RHS Repeat; Region: RHS_repeat; pfam05593
198214000834	RHS protein; Region: RHS; pfam03527
198214000835	RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696
198214000836	Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases); Region: Xc-1258_like; cd07575
198214000837	putative active site [active]
198214000838	catalytic triad [active]
198214000839	dimer interface [polypeptide binding]; other site
198214000840	multimer interface [polypeptide binding]; other site
198214000841	C-lysozyme inhibitor; Provisional; Region: PRK09993
198214000842	acyl-CoA dehydrogenase; Reviewed; Region: fadE; PRK09463
198214000843	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
198214000844	active site
198214000845	Domain of unknown function (DUF1974); Region: DUF1974; pfam09317
198214000846	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
198214000847	dimer interface [polypeptide binding]; other site
198214000848	active site
198214000849	Glutamine amidotransferases class-II (Gn-AT)_YafJ-type.  YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea.  YafJ has a conserved structural fold similar to those of other class II...; Region: YafJ; cd01908
198214000850	putative active site [active]
198214000851	Glutamine amidotransferases class-II; Region: GATase_2; pfam00310
198214000852	putative dimer interface [polypeptide binding]; other site
198214000853	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3034
198214000854	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
198214000855	Similar to Escherichia coli K12  lipoprotein gi: 1786421 (250 aa). BLAST with identity of 93% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214000856	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG1943
198214000857	Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlhA; COG1298
198214000858	hypothetical protein; Validated; Region: PRK06778
198214000859	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
198214000860	ligand binding site [chemical binding]; other site
198214000861	DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586
198214000862	active site
198214000863	DNA polymerase IV; Validated; Region: PRK02406
198214000864	DNA binding site [nucleotide binding]
198214000865	putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional; Region: PRK09778
198214000866	putative toxin YafO; Provisional; Region: PRK09885
198214000867	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
198214000868	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214000869	Coenzyme A binding pocket [chemical binding]; other site
198214000870	hypothetical protein; Reviewed; Region: PRK09588
198214000871	tRNA-splicing ligase RtcB; Region: RtcB; pfam01139
198214000872	Xaa-His dipeptidase; Region: aa-his-dipept; TIGR01893
198214000873	M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide; Region: M20_pepD; cd03890
198214000874	metal binding site [ion binding]; metal-binding site
198214000875	dimer interface [polypeptide binding]; other site
198214000876	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214000877	active site
198214000878	Alpha/beta hydrolase of unknown function (DUF1100); Region: DUF1100; pfam06500
198214000879	fermentation/respiration switch protein; Reviewed; Region: frsA; PRK05077
198214000880	DNA-binding transcriptional regulator Crl; Provisional; Region: PRK10984
198214000881	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
198214000882	trimer interface [polypeptide binding]; other site
198214000883	eyelet of channel; other site
198214000884	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214000885	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214000886	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214000887	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214000888	gamma-glutamyl kinase; Provisional; Region: PRK05429
198214000889	AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine)...; Region: AAK_G5K_ProB; cd04242
198214000890	nucleotide binding site [chemical binding]; other site
198214000891	homotetrameric interface [polypeptide binding]; other site
198214000892	putative phosphate binding site [ion binding]; other site
198214000893	putative allosteric binding site; other site
198214000894	PUA domain; Region: PUA; pfam01472
198214000895	Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Region: ALDH_F18-19_ProA-GPR; cd07079
198214000896	putative catalytic cysteine [active]
198214000897	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
198214000898	DNA binding site [nucleotide binding]
198214000899	Int/Topo IB signature motif; other site
198214000900	active site
198214000901	putative transposase OrfB; Reviewed; Region: PHA02517
198214000902	HTH-like domain; Region: HTH_21; pfam13276
198214000903	Integrase core domain; Region: rve; pfam00665
198214000904	Integrase core domain; Region: rve_3; pfam13683
198214000905	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000906	Transposase; Region: HTH_Tnp_1; pfam01527
198214000907	integrase; Provisional; Region: int; PHA02601
198214000908	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
198214000909	Protein of unknown function (DUF551); Region: DUF551; pfam04448
198214000910	Transposase; Region: HTH_Tnp_1; cl17663
198214000911	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000912	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000913	Transposase; Region: HTH_Tnp_1; pfam01527
198214000914	putative transposase OrfB; Reviewed; Region: PHA02517
198214000915	HTH-like domain; Region: HTH_21; pfam13276
198214000916	Integrase core domain; Region: rve; pfam00665
198214000917	Integrase core domain; Region: rve_3; pfam13683
198214000918	Predicted membrane protein [Function unknown]; Region: COG2246
198214000919	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714
198214000920	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
198214000921	Ligand binding site; other site
198214000922	Putative Catalytic site; other site
198214000923	DXD motif; other site
198214000924	Glucosyl transferase GtrII; Region: Glucos_trans_II; cl10304
198214000925	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214000926	Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]; Region: NolL; COG3594
198214000927	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
198214000928	putative transposase OrfB; Reviewed; Region: PHA02517
198214000929	HTH-like domain; Region: HTH_21; pfam13276
198214000930	Integrase core domain; Region: rve; pfam00665
198214000931	Integrase core domain; Region: rve_3; pfam13683
198214000932	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000933	Transposase; Region: HTH_Tnp_1; pfam01527
198214000934	integrase; Provisional; Region: int; PHA02601
198214000935	P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1; Region: INT_P22_C; cd01192
198214000936	Int/Topo IB signature motif; other site
198214000937	Predicted acyltransferases [Lipid metabolism]; Region: COG1835
198214000938	putative transposase OrfB; Reviewed; Region: PHA02517
198214000939	HTH-like domain; Region: HTH_21; pfam13276
198214000940	Integrase core domain; Region: rve; pfam00665
198214000941	Integrase core domain; Region: rve_3; pfam13683
198214000942	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000943	Transposase; Region: HTH_Tnp_1; pfam01527
198214000944	Transposase; Region: HTH_Tnp_1; cl17663
198214000945	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214000946	diguanylate cyclase AdrA; Provisional; Region: adrA; PRK10245
198214000947	MASE2 domain; Region: MASE2; pfam05230
198214000948	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214000949	metal binding site [ion binding]; metal-binding site
198214000950	active site
198214000951	I-site; other site
198214000952	pyrroline-5-carboxylate reductase; Reviewed; Region: PRK11880
198214000953	NADP oxidoreductase coenzyme F420-dependent; Region: F420_oxidored; pfam03807
198214000954	Pyrroline-5-carboxylate reductase dimerization; Region: P5CR_dimer; pfam14748
198214000955	hypothetical protein; Validated; Region: PRK00124
198214000956	Shikimate kinase [Amino acid transport and metabolism]; Region: AroK; COG0703
198214000957	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
198214000958	ADP binding site [chemical binding]; other site
198214000959	magnesium binding site [ion binding]; other site
198214000960	putative shikimate binding site; other site
198214000961	hypothetical protein; Provisional; Region: PRK10380
198214000962	hypothetical protein; Provisional; Region: PRK10481
198214000963	hypothetical protein; Provisional; Region: PRK10579
198214000964	Protein of unknown function (DUF2773); Region: DUF2773; pfam10971
198214000965	Protein of unknown function (DUF1861); Region: DUF1861; pfam08950
198214000966	DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]; Region: RdgC; COG2974
198214000967	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
198214000968	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214000969	nucleotide binding site [chemical binding]; other site
198214000970	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786594 (81 aa). BLAST with identity of 97% in 47 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214000971	MFS transport protein AraJ; Provisional; Region: PRK10091
198214000972	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214000973	putative substrate translocation pore; other site
198214000974	exonuclease subunit SbcC; Provisional; Region: PRK10246
198214000975	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214000976	Walker A/P-loop; other site
198214000977	ATP binding site [chemical binding]; other site
198214000978	Q-loop/lid; other site
198214000979	HemX; Region: HemX; cl19375
198214000980	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214000981	Q-loop/lid; other site
198214000982	ABC transporter signature motif; other site
198214000983	Walker B; other site
198214000984	D-loop; other site
198214000985	H-loop/switch region; other site
198214000986	exonuclease subunit SbcD; Provisional; Region: PRK10966
198214000987	Mre11 nuclease, N-terminal metallophosphatase domain; Region: MPP_Mre11_N; cd00840
198214000988	active site
198214000989	metal binding site [ion binding]; metal-binding site
198214000990	DNA binding site [nucleotide binding]
198214000991	Type 5 capsule protein repressor C-terminal domain; Region: SbcD_C; pfam12320
198214000992	transcriptional regulator PhoB; Provisional; Region: PRK10161
198214000993	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214000994	active site
198214000995	phosphorylation site [posttranslational modification]
198214000996	intermolecular recognition site; other site
198214000997	dimerization interface [polypeptide binding]; other site
198214000998	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214000999	DNA binding site [nucleotide binding]
198214001000	phosphate regulon sensor protein; Provisional; Region: phoR; PRK11006
198214001001	Domain of unknown function (DUF3329); Region: DUF3329; pfam11808
198214001002	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
198214001003	putative active site [active]
198214001004	heme pocket [chemical binding]; other site
198214001005	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214001006	dimer interface [polypeptide binding]; other site
198214001007	phosphorylation site [posttranslational modification]
198214001008	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214001009	ATP binding site [chemical binding]; other site
198214001010	Mg2+ binding site [ion binding]; other site
198214001011	G-X-G motif; other site
198214001012	branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional; Region: PRK15433
198214001013	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
198214001014	putative proline-specific permease; Provisional; Region: proY; PRK10580
198214001015	Spore germination protein; Region: Spore_permease; cl17796
198214001016	maltodextrin glucosidase; Provisional; Region: PRK10785
198214001017	N-terminal Early set domain associated with the catalytic domain of cyclomaltodextrinase and pullulan-degrading enzymes; Region: E_set_CDase_PDE_N; cd02857
198214001018	homodimer interface [polypeptide binding]; other site
198214001019	Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins; Region: AmyAc_CMD; cd11338
198214001020	active site
198214001021	homodimer interface [polypeptide binding]; other site
198214001022	catalytic site [active]
198214001023	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147
198214001024	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; PRK00112
198214001025	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
198214001026	preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585
198214001027	SecD export protein N-terminal TM region; Region: SecD-TM1; pfam13721
198214001028	preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812
198214001029	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
198214001030	protein-export membrane protein, SecD/SecF family; Region: 2A0604s01; TIGR00916
198214001031	preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022
198214001032	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
198214001033	Protein export membrane protein; Region: SecD_SecF; pfam02355
198214001034	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
198214001035	active site
198214001036	nucleoside-specific channel-forming protein Tsx; Provisional; Region: PRK15106
198214001037	hypothetical protein; Provisional; Region: PRK11530
198214001038	transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464
198214001039	ATP cone domain; Region: ATP-cone; pfam03477
198214001040	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional; Region: ribD; PRK10786
198214001041	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
198214001042	catalytic motif [active]
198214001043	Zn binding site [ion binding]; other site
198214001044	riboflavin-specific deaminase C-terminal domain; Region: ribD_Cterm; TIGR00227
198214001045	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
198214001046	homopentamer interface [polypeptide binding]; other site
198214001047	active site
198214001048	Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619
198214001049	thiamine monophosphate kinase; Provisional; Region: PRK05731
198214001050	ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the...; Region: ThiL; cd02194
198214001051	ATP binding site [chemical binding]; other site
198214001052	dimerization interface [polypeptide binding]; other site
198214001053	Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism; Region: PgpA; cd06971
198214001054	tetramer interfaces [polypeptide binding]; other site
198214001055	binuclear metal-binding site [ion binding]; other site
198214001056	voltage-dependent potassium channel beta subunit, animal; Region: Kv_beta; TIGR01293
198214001057	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214001058	active site
198214001059	catalytic tetrad [active]
198214001060	1-deoxy-D-xylulose-5-phosphate synthase; Region: dxs; TIGR00204
198214001061	Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products...; Region: TPP_DXS; cd02007
198214001062	TPP-binding site; other site
198214001063	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
198214001064	PYR/PP interface [polypeptide binding]; other site
198214001065	dimer interface [polypeptide binding]; other site
198214001066	TPP binding site [chemical binding]; other site
198214001067	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
198214001068	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
198214001069	substrate binding pocket [chemical binding]; other site
198214001070	chain length determination region; other site
198214001071	active site lid residues [active]
198214001072	substrate-Mg2+ binding site; other site
198214001073	catalytic residues [active]
198214001074	aspartate-rich region 1; other site
198214001075	aspartate-rich region 2; other site
198214001076	exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977
198214001077	oxidative-stress-resistance chaperone; Provisional; Region: PRK11574
198214001078	Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135
198214001079	conserved cys residue [active]
198214001080	2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522
198214001081	Ketopantoate reductase PanE/ApbA; Region: ApbA; pfam02558
198214001082	Ketopantoate reductase PanE/ApbA C terminal; Region: ApbA_C; pfam08546
198214001083	Proteins similar to Escherichia coli YajQ; Region: YajQ_like; cd11740
198214001084	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
198214001085	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
198214001086	Sel1-like repeats; Region: SEL1; smart00671
198214001087	Sel1-like repeats; Region: SEL1; smart00671
198214001088	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214001089	Protein of unknown function (DUF1778); Region: DUF1778; pfam08681
198214001090	Protoheme IX farnesyltransferase; Region: PT_UbiA_Cox10; cd13957
198214001091	putative active site [active]
198214001092	cytochrome o ubiquinol oxidase subunit IV; Provisional; Region: PRK10582
198214001093	Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863
198214001094	Subunit I/III interface [polypeptide binding]; other site
198214001095	Subunit III/IV interface [polypeptide binding]; other site
198214001096	Similar to Escherichia coli K12 cytochrome o ubiquinol oxidase subunit I gi: 1786634 (664 aa). BLAST with identity of 99% in 663 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001097	Similar to Escherichia coli K12 cytochrome o ubiquinol oxidase subunit II gi: 1786635 (316 aa). BLAST with identity of 98% in 165 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214001098	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214001099	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214001100	Homeodomain-like domain; Region: HTH_23; pfam13384
198214001101	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001102	Transposase; Region: HTH_Tnp_1; pfam01527
198214001103	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214001104	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214001105	putative substrate translocation pore; other site
198214001106	hypothetical protein; Provisional; Region: PRK11627
198214001107	transcriptional regulator BolA; Provisional; Region: PRK11628
198214001108	trigger factor; Provisional; Region: tig; PRK01490
198214001109	Bacterial trigger factor protein (TF); Region: Trigger_N; pfam05697
198214001110	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
198214001111	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
198214001112	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
198214001113	oligomer interface [polypeptide binding]; other site
198214001114	active site residues [active]
198214001115	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
198214001116	ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689
198214001117	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214001118	Walker A motif; other site
198214001119	ATP binding site [chemical binding]; other site
198214001120	Walker B motif; other site
198214001121	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
198214001122	DNA-binding ATP-dependent protease La; Provisional; Region: PRK10787
198214001123	ATP-dependent protease La (LON) domain; Region: LON; pfam02190
198214001124	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214001125	Walker A motif; other site
198214001126	ATP binding site [chemical binding]; other site
198214001127	Walker B motif; other site
198214001128	arginine finger; other site
198214001129	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
198214001130	histone-like DNA-binding protein HU; Region: HU; cd13831
198214001131	dimer interface [polypeptide binding]; other site
198214001132	DNA binding site [nucleotide binding]
198214001133	periplasmic folding chaperone; Provisional; Region: PRK10788
198214001134	SurA N-terminal domain; Region: SurA_N_3; cl07813
198214001135	PPIC-type PPIASE domain; Region: Rotamase_2; pfam13145
198214001136	DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]; Region: ComEA; COG1555
198214001137	Bacterial cellulose synthase subunit; Region: BcsB; cl15851
198214001138	competence protein ComEA helix-hairpin-helix repeat region; Region: TIGR00426
198214001139	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
198214001140	active site
198214001141	ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995
198214001142	Ligand Binding Site [chemical binding]; other site
198214001143	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
198214001144	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
198214001145	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214001146	thiamin pyrimidine pyrophosphate hydrolase; Provisional; Region: PRK15126
198214001147	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214001148	active site
198214001149	motif I; other site
198214001150	motif II; other site
198214001151	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214001152	dimerization interface [polypeptide binding]; other site
198214001153	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
198214001154	putative DNA binding site [nucleotide binding]; other site
198214001155	putative Zn2+ binding site [ion binding]; other site
198214001156	AsnC family; Region: AsnC_trans_reg; pfam01037
198214001157	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
198214001158	putative multidrug transporter membrane\ATP-binding components; Provisional; Region: PRK10789
198214001159	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214001160	Walker A/P-loop; other site
198214001161	ATP binding site [chemical binding]; other site
198214001162	Q-loop/lid; other site
198214001163	ABC transporter signature motif; other site
198214001164	Walker B; other site
198214001165	D-loop; other site
198214001166	H-loop/switch region; other site
198214001167	putative multidrug transporter membrane\ATP-binding components; Provisional; Region: PRK10790
198214001168	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
198214001169	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214001170	Walker A/P-loop; other site
198214001171	ATP binding site [chemical binding]; other site
198214001172	Q-loop/lid; other site
198214001173	ABC transporter signature motif; other site
198214001174	Walker B; other site
198214001175	D-loop; other site
198214001176	H-loop/switch region; other site
198214001177	nitrogen regulatory protein P-II 2; Provisional; Region: PRK10665
198214001178	ammonium transporter; Provisional; Region: PRK10666
198214001179	acyl-CoA thioesterase II; Provisional; Region: PRK10526
198214001180	Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP)...; Region: Thioesterase_II_repeat2; cd03445
198214001181	active site
198214001182	Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP)...; Region: Thioesterase_II_repeat1; cd03444
198214001183	catalytic triad [active]
198214001184	dimer interface [polypeptide binding]; other site
198214001185	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3126
198214001186	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214001187	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214001188	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214001189	Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350
198214001190	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
198214001191	DNA binding site [nucleotide binding]
198214001192	active site
198214001193	Uncharacterized conserved protein [Function unknown]; Region: COG5507
198214001194	Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]; Region: COG4943
198214001195	CSS motif domain associated with EAL; Region: CSS-motif; pfam12792
198214001196	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214001197	Inner membrane protein YlaC; Region: YlaC; pfam10777
198214001198	Similar to Escherichia coli K12  transferase gi: 1786664 (184 aa). BLAST with identity of 98% in 183 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214001199	gene expression modulator; Provisional; Region: PRK10945
198214001200	Hha toxicity attenuator; Provisional; Region: PRK10667
198214001201	multidrug efflux system protein AcrB; Provisional; Region: PRK15127
198214001202	MMPL family; Region: MMPL; cl14618
198214001203	MMPL family; Region: MMPL; cl14618
198214001204	multidrug efflux system transporter AcrA; Provisional; Region: PRK15030
198214001205	Biotin-lipoyl like; Region: Biotin_lipoyl_2; cl19169
198214001206	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214001207	DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668
198214001208	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214001209	MAATS-type transcriptional repressor, C-terminal region; Region: TetR_C_2; pfam08361
198214001210	hypothetical protein; Provisional; Region: PRK11281
198214001211	FSIP1 family; Region: FSIP1; pfam15554
198214001212	Mechanosensitive ion channel inner membrane domain 1; Region: MscS_TM; pfam12794
198214001213	Mechanosensitive ion channel; Region: MS_channel; pfam00924
198214001214	hypothetical protein; Provisional; Region: PRK11038
198214001215	primosomal replication protein N''; Provisional; Region: PRK10093
198214001216	hypothetical protein; Provisional; Region: PRK10527
198214001217	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214001218	active site
198214001219	DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994
198214001220	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214001221	Walker A motif; other site
198214001222	ATP binding site [chemical binding]; other site
198214001223	Walker B motif; other site
198214001224	DNA polymerase III subunit delta'; Validated; Region: PRK08485
198214001225	arginine finger; other site
198214001226	DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169
198214001227	DNA polymerase III subunits tau domain IV DnaB-binding; Region: DNA_pol3_tau_4; pfam12168
198214001228	DNA polymerase III tau subunit V interacting with alpha; Region: DNA_pol3_tau_5; pfam12170
198214001229	hypothetical protein; Validated; Region: PRK00153
198214001230	recombination protein RecR; Reviewed; Region: recR; PRK00076
198214001231	RecR protein; Region: RecR; pfam02132
198214001232	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
198214001233	putative active site [active]
198214001234	putative metal-binding site [ion binding]; other site
198214001235	tetramer interface [polypeptide binding]; other site
198214001236	heat shock protein 90; Provisional; Region: PRK05218
198214001237	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214001238	ATP binding site [chemical binding]; other site
198214001239	Mg2+ binding site [ion binding]; other site
198214001240	G-X-G motif; other site
198214001241	Hsp90 protein; Region: HSP90; pfam00183
198214001242	adenylate kinase; Reviewed; Region: adk; PRK00279
198214001243	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
198214001244	AMP-binding site [chemical binding]; other site
198214001245	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
198214001246	ferrochelatase; Region: hemH; TIGR00109
198214001247	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
198214001248	C-terminal domain interface [polypeptide binding]; other site
198214001249	active site
198214001250	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
198214001251	active site
198214001252	N-terminal domain interface [polypeptide binding]; other site
198214001253	acetyl esterase; Provisional; Region: PRK10162
198214001254	Esterase/lipase [Lipid metabolism]; Region: Aes; COG0657
198214001255	inosine/guanosine kinase; Provisional; Region: PRK15074
198214001256	adenosine kinase; Provisional; Region: PTZ00247
198214001257	substrate binding site [chemical binding]; other site
198214001258	ATP binding site [chemical binding]; other site
198214001259	putative cation:proton antiport protein; Provisional; Region: PRK10669
198214001260	Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]; Region: RosB; COG4651
198214001261	TrkA-N domain; Region: TrkA_N; pfam02254
198214001262	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214001263	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214001264	putative substrate translocation pore; other site
198214001265	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed; Region: ushA; PRK09558
198214001266	Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain; Region: MPP_UshA_N; cd07405
198214001267	active site
198214001268	metal binding site [ion binding]; metal-binding site
198214001269	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
198214001270	This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS)...; Region: YbaK_deacylase; cd00002
198214001271	putative deacylase active site [active]
198214001272	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3735
198214001273	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214001274	non-specific DNA binding site [nucleotide binding]; other site
198214001275	salt bridge; other site
198214001276	sequence-specific DNA binding site [nucleotide binding]; other site
198214001277	copper exporting ATPase; Provisional; Region: copA; PRK10671
198214001278	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
198214001279	metal-binding site [ion binding]
198214001280	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
198214001281	metal-binding site [ion binding]
198214001282	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
198214001283	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214001284	motif II; other site
198214001285	glutaminase; Reviewed; Region: PRK12356
198214001286	amino acid transporter; Region: 2A0306; TIGR00909
198214001287	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cl00462
198214001288	DNA-binding transcriptional regulator CueR; Provisional; Region: PRK10227
198214001289	Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108
198214001290	DNA binding residues [nucleotide binding]
198214001291	dimer interface [polypeptide binding]; other site
198214001292	copper binding site [ion binding]; other site
198214001293	Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: COG1585
198214001294	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
198214001295	Paraslipin or slipin-2 (SLP-2, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; Region: SPFH_paraslipin; cd08829
198214001296	putative ABC transporter ATP-binding protein YbbL; Provisional; Region: PRK10247
198214001297	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214001298	Walker A/P-loop; other site
198214001299	ATP binding site [chemical binding]; other site
198214001300	Q-loop/lid; other site
198214001301	ABC transporter signature motif; other site
198214001302	Walker B; other site
198214001303	D-loop; other site
198214001304	H-loop/switch region; other site
198214001305	TIGR00245 family protein; Region: TIGR00245
198214001306	Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]; Region: COG3118
198214001307	ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria; Region: ybbN; cd02956
198214001308	Tetratricopeptide repeat; Region: TPR_20; pfam14561
198214001309	short chain dehydrogenase; Validated; Region: PRK06182
198214001310	17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; Region: 17beta-HSD-like_SDR_c; cd05374
198214001311	NADP binding site [chemical binding]; other site
198214001312	active site
198214001313	steroid binding site; other site
198214001314	Similar to Escherichia coli K12 acyl-CoA thioesterase I; also functions as protease I gi: 1786702 (209 aa). BLAST with identity of 99% in 208 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001315	putative ABC transporter ATP-binding protein YbbA; Provisional; Region: PRK10584
198214001316	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
198214001317	Walker A/P-loop; other site
198214001318	ATP binding site [chemical binding]; other site
198214001319	Q-loop/lid; other site
198214001320	ABC transporter signature motif; other site
198214001321	Walker B; other site
198214001322	D-loop; other site
198214001323	H-loop/switch region; other site
198214001324	tRNA 2-selenouridine synthase; Provisional; Region: PRK11784
198214001325	Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB; Region: RHOD_YbbB; cd01520
198214001326	active site residue [active]
198214001327	DNA-binding transcriptional activator AllS; Provisional; Region: PRK10094
198214001328	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214001329	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214001330	dimerization interface [polypeptide binding]; other site
198214001331	Ureidoglycolate hydrolase [Nucleotide transport and metabolism]; Region: DAL3; COG3194
198214001332	DNA-binding transcriptional repressor AllR; Provisional; Region: PRK10163
198214001333	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
198214001334	Bacterial transcriptional regulator; Region: IclR; pfam01614
198214001335	glyoxylate carboligase; Provisional; Region: PRK11269
198214001336	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
198214001337	PYR/PP interface [polypeptide binding]; other site
198214001338	dimer interface [polypeptide binding]; other site
198214001339	TPP binding site [chemical binding]; other site
198214001340	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
198214001341	Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the...; Region: TPP_Gcl; cd02006
198214001342	TPP-binding site [chemical binding]; other site
198214001343	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214001344	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214001345	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214001346	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214001347	Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]; Region: GlxB; COG3257
198214001348	Protein of unknown function (DUF861); Region: Cupin_3; pfam05899
198214001349	allantoate amidohydrolase; Region: AllC; TIGR03176
198214001350	M20 Peptidase beta-alanine synthase, an amidohydrolase; Region: M20_bAS; cd03884
198214001351	active site
198214001352	metal binding site [ion binding]; metal-binding site
198214001353	dimer interface [polypeptide binding]; other site
198214001354	Protein of unknown function (DUF2877); Region: DUF2877; pfam11392
198214001355	AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an...; Region: AAK_CK; cd04235
198214001356	putative substrate binding site [chemical binding]; other site
198214001357	nucleotide binding site [chemical binding]; other site
198214001358	nucleotide binding site [chemical binding]; other site
198214001359	homodimer interface [polypeptide binding]; other site
198214001360	Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]; Region: PurK; COG0026
198214001361	ATP-grasp domain; Region: ATP-grasp; pfam02222
198214001362	Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Region: PurE; COG0041
198214001363	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
198214001364	putative active site [active]
198214001365	putative metal binding site [ion binding]; other site
198214001366	cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920
198214001367	substrate binding site [chemical binding]; other site
198214001368	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
198214001369	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
198214001370	active site
198214001371	HIGH motif; other site
198214001372	KMSKS motif; other site
198214001373	Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963
198214001374	tRNA binding surface [nucleotide binding]; other site
198214001375	anticodon binding site; other site
198214001376	Predicted membrane-bound metal-dependent hydrolases [General function prediction only]; Region: COG1988
198214001377	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214001378	RNA binding surface [nucleotide binding]; other site
198214001379	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK10792
198214001380	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
198214001381	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
198214001382	homodimer interface [polypeptide binding]; other site
198214001383	NADP binding site [chemical binding]; other site
198214001384	substrate binding site [chemical binding]; other site
198214001385	type-1 fimbrial protein subunit A; Provisional; Region: PRK15194
198214001386	fimbrial chaperone protein FimC; Provisional; Region: PRK15195
198214001387	Pili and flagellar-assembly chaperone, PapD N-terminal domain; Region: PapD_N; pfam00345
198214001388	Pili assembly chaperone PapD, C-terminal domain; Region: PapD_C; pfam02753
198214001389	PapC N-terminal domain; Region: PapC_N; pfam13954
198214001390	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214001391	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214001392	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214001393	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214001394	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214001395	active site
198214001396	phosphorylation site [posttranslational modification]
198214001397	intermolecular recognition site; other site
198214001398	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
198214001399	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214001400	hypothetical protein; Provisional; Region: PRK09936
198214001401	'Similar to Escherichia coli K12 bacteriophage N4 receptor, outer membrane protein gi: 1786780 (991 aa). BLAST with identity of 97% in 989 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214001402	bacteriophage N4 adsorption protein B; Provisional; Region: PRK14716
198214001403	bacteriophage N4 adsorption protein B; Provisional; Region: nfrB; PRK11234
198214001404	active site
198214001405	Type II secretion system (T2SS), protein E, N-terminal domain; Region: T2SE_Nter; pfam05157
198214001406	sensor kinase CusS; Provisional; Region: PRK09835
198214001407	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214001408	dimerization interface [polypeptide binding]; other site
198214001409	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214001410	dimer interface [polypeptide binding]; other site
198214001411	phosphorylation site [posttranslational modification]
198214001412	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214001413	ATP binding site [chemical binding]; other site
198214001414	Mg2+ binding site [ion binding]; other site
198214001415	G-X-G motif; other site
198214001416	DNA-binding transcriptional activator CusR; Provisional; Region: PRK09836
198214001417	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214001418	active site
198214001419	phosphorylation site [posttranslational modification]
198214001420	intermolecular recognition site; other site
198214001421	dimerization interface [polypeptide binding]; other site
198214001422	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214001423	DNA binding site [nucleotide binding]
198214001424	copper/silver efflux system outer membrane protein CusC; Provisional; Region: PRK09837
198214001425	Outer membrane efflux protein; Region: OEP; pfam02321
198214001426	Outer membrane efflux protein; Region: OEP; pfam02321
198214001427	periplasmic copper-binding protein; Provisional; Region: PRK09838
198214001428	Transposase; Region: HTH_Tnp_1; cl17663
198214001429	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001430	Similar to Shigella flexneri Bifunctional tail protein  sp: Q9XJP3 (624 aa). BLAST with identity of 96% in 392 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214001431	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
198214001432	HTH-like domain; Region: HTH_21; pfam13276
198214001433	Integrase core domain; Region: rve; pfam00665
198214001434	Integrase core domain; Region: rve_3; pfam13683
198214001435	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214001436	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001437	heavy metal efflux pump, CzcA family; Region: 2A0601; TIGR00914
198214001438	phenylalanine transporter; Provisional; Region: PRK10249
198214001439	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214001440	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
198214001441	Mechanosensitive ion channel; Region: MS_channel; pfam00924
198214001442	Similar to Escherichia coli K12 oxygen-insensitive NAD(P)H nitroreductase gi: 1786792 (218 aa). BLAST with identity of 98% in 663 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214001443	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214001444	hypothetical protein; Provisional; Region: PRK10250
198214001445	Protein of unknown function (DUF1158); Region: DUF1158; pfam06643
198214001446	gamma-glutamyl:cysteine ligase; Provisional; Region: PRK13516
198214001447	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001448	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214001449	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214001450	putative transposase OrfB; Reviewed; Region: PHA02517
198214001451	HTH-like domain; Region: HTH_21; pfam13276
198214001452	Integrase core domain; Region: rve; pfam00665
198214001453	Integrase core domain; Region: rve_3; pfam13683
198214001454	Transposase; Region: HTH_Tnp_1; cl17663
198214001455	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001456	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001457	Transposase; Region: HTH_Tnp_1; pfam01527
198214001458	putative transposase OrfB; Reviewed; Region: PHA02517
198214001459	HTH-like domain; Region: HTH_21; pfam13276
198214001460	Integrase core domain; Region: rve; pfam00665
198214001461	Integrase core domain; Region: rve_2; pfam13333
198214001462	Hok/gef family; Region: HOK_GEF; pfam01848
198214001463	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional; Region: PRK10251
198214001464	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
198214001465	4'-phosphopantetheinyl transferase superfamily; Region: ACPS; pfam01648
198214001466	outer membrane receptor FepA; Provisional; Region: PRK13524
198214001467	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
198214001468	N-terminal plug; other site
198214001469	ligand-binding site [chemical binding]; other site
198214001470	enterobactin/ferric enterobactin esterase; Provisional; Region: PRK10439
198214001471	Domain of unknown function (DUF3327); Region: DUF3327; pfam11806
198214001472	Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2819; cl19187
198214001473	enterobactin synthase subunit F; Provisional; Region: entF; PRK10252
198214001474	Condensation domain; Region: Condensation; cl19241
198214001475	The adenylation domain of nonribosomal peptide synthetases (NRPS); Region: A_NRPS; cd05930
198214001476	acyl-activating enzyme (AAE) consensus motif; other site
198214001477	AMP binding site [chemical binding]; other site
198214001478	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
198214001479	Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3319
198214001480	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214001481	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214001482	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214001483	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214001484	Similar to Escherichia coli K12 ferric enterobactin (enterochelin) transport gi: 1786802 (378 aa). BLAST with identity of 97% in 378 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001485	iron-enterobactin transporter ATP-binding protein; Provisional; Region: PRK10253
198214001486	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
198214001487	Walker A/P-loop; other site
198214001488	ATP binding site [chemical binding]; other site
198214001489	Q-loop/lid; other site
198214001490	ABC transporter signature motif; other site
198214001491	Walker B; other site
198214001492	D-loop; other site
198214001493	H-loop/switch region; other site
198214001494	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214001495	ABC-ATPase subunit  interface; other site
198214001496	dimer interface [polypeptide binding]; other site
198214001497	putative PBP binding regions; other site
198214001498	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214001499	ABC-ATPase subunit  interface; other site
198214001500	dimer interface [polypeptide binding]; other site
198214001501	putative PBP binding regions; other site
198214001502	enterobactin exporter EntS; Provisional; Region: PRK10489
198214001503	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214001504	putative substrate translocation pore; other site
198214001505	ABC-type Fe2+-enterobactin transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG4592
198214001506	Fe3+-siderophore binding domain FhuD.  These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins...; Region: FhuD; cd01146
198214001507	siderophore binding site; other site
198214001508	'Similar to Escherichia coli K12 isochorismate hydroxymutase 2, enterochelin biosynthesis gi: 1786809 (392 aa). BLAST with identity of 97% in 392 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214001509	enterobactin synthase subunit E; Provisional; Region: entE; PRK10946
198214001510	2,3-dihydroxybenzoate-AMP ligase; Region: 23DHB-AMP_lg; cd05920
198214001511	acyl-activating enzyme (AAE) consensus motif; other site
198214001512	active site
198214001513	AMP binding site [chemical binding]; other site
198214001514	substrate binding site [chemical binding]; other site
198214001515	Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological...; Region: isochorismatase; cd01013
198214001516	hydrophobic substrate binding pocket; other site
198214001517	active site
198214001518	conserved cis-peptide bond; other site
198214001519	Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3433
198214001520	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated; Region: PRK08220
198214001521	2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; Region: DH-DHB-DH_SDR_c; cd05331
198214001522	putative NAD(P) binding site [chemical binding]; other site
198214001523	active site
198214001524	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
198214001525	CoenzymeA binding site [chemical binding]; other site
198214001526	subunit interaction site [polypeptide binding]; other site
198214001527	PHB binding site; other site
198214001528	carbon starvation protein A; Provisional; Region: PRK15015
198214001529	Carbon starvation protein CstA; Region: CstA; pfam02554
198214001530	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
198214001531	Uncharacterized small protein [Function unknown]; Region: COG2879
198214001532	Glycerol dehydrogenases-like; Region: GlyDH-like1; cd08172
198214001533	putative active site [active]
198214001534	metal binding site [ion binding]; metal-binding site
198214001535	methionine aminotransferase; Validated; Region: PRK09082
198214001536	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214001537	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214001538	homodimer interface [polypeptide binding]; other site
198214001539	catalytic residue [active]
198214001540	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786817 (210 aa). BLAST with identity of 99% in 627 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214001541	putative transposase OrfB; Reviewed; Region: PHA02517
198214001542	HTH-like domain; Region: HTH_21; pfam13276
198214001543	Integrase core domain; Region: rve; pfam00665
198214001544	Integrase core domain; Region: rve_3; pfam13683
198214001545	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001546	Transposase; Region: HTH_Tnp_1; cl17663
198214001547	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786818 (407 aa). BLAST with identity of 98% in 817 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214001548	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001549	Transposase; Region: HTH_Tnp_1; pfam01527
198214001550	putative transposase OrfB; Reviewed; Region: PHA02517
198214001551	HTH-like domain; Region: HTH_21; pfam13276
198214001552	Integrase core domain; Region: rve; pfam00665
198214001553	Integrase core domain; Region: rve_2; pfam13333
198214001554	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11482
198214001555	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214001556	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214001557	disulfide isomerase/thiol-disulfide oxidase; Provisional; Region: dsbG; PRK11657
198214001558	DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds...; Region: DsbA_DsbC_DsbG; cd03020
198214001559	dimerization domain [polypeptide binding]; other site
198214001560	dimer interface [polypeptide binding]; other site
198214001561	catalytic residues [active]
198214001562	alkyl hydroperoxide reductase subunit C; Provisional; Region: PRK10382
198214001563	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
198214001564	dimer interface [polypeptide binding]; other site
198214001565	decamer (pentamer of dimers) interface [polypeptide binding]; other site
198214001566	catalytic triad [active]
198214001567	peroxidatic and resolving cysteines [active]
198214001568	alkyl hydroperoxide reductase subunit F; Provisional; Region: PRK15317
198214001569	Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction...; Region: AhpF_NTD_N; cd02974
198214001570	catalytic residue [active]
198214001571	TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then...; Region: AhpF_NTD_C; cd03026
198214001572	catalytic residues [active]
198214001573	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214001574	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214001575	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
198214001576	Ligand Binding Site [chemical binding]; other site
198214001577	Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1; Region: FDH_like_1; cd08283
198214001578	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
198214001579	NAD binding site [chemical binding]; other site
198214001580	catalytic Zn binding site [ion binding]; other site
198214001581	structural Zn binding site [ion binding]; other site
198214001582	nucleoside diphosphate kinase regulator; Provisional; Region: PRK05753
198214001583	Rnk N-terminus; Region: Rnk_N; pfam14760
198214001584	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
198214001585	Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far.  This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases).  Plant T2 RNases are expressed during leaf...; Region: RNase_T2_prok; cd01062
198214001586	B1 nucleotide binding pocket [chemical binding]; other site
198214001587	B2 nucleotide binding pocket [chemical binding]; other site
198214001588	CAS motifs; other site
198214001589	active site
198214001590	Similar to Escherichia coli K12  a membrane protein gi: 1786829 (488 aa). BLAST with identity of 99% in 487 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001591	triphosphoribosyl-dephospho-CoA synthase; Provisional; Region: citG; PRK10096
198214001592	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786831 (184 aa). BLAST with identity of 98% in 183 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001593	Citrate lyase, alpha subunit [Energy production and conversion]; Region: CitF; COG3051
198214001594	HpcH/HpaI aldolase/citrate lyase family; Region: HpcH_HpaI; cl17231
198214001595	Citrate lyase, gamma subunit [Energy production and conversion]; Region: CitD; COG3052
198214001596	Citrate lyase synthetase [Energy production and conversion]; Region: CitC; COG3053
198214001597	Citrate lyase ligase; Region: Citrate_lyase_ligase; cd02169
198214001598	putative active site [active]
198214001599	(T/H)XGH motif; other site
198214001600	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214001601	pyridoxal phosphate (PLP) phosphatase; Provisional; Region: PRK10530
198214001602	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214001603	active site
198214001604	motif I; other site
198214001605	motif II; other site
198214001606	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214001607	molybdate transporter ATP-binding protein; Provisional; Region: modC; PRK11144
198214001608	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214001609	Walker A/P-loop; other site
198214001610	ATP binding site [chemical binding]; other site
198214001611	Q-loop/lid; other site
198214001612	ABC transporter signature motif; other site
198214001613	Walker B; other site
198214001614	D-loop; other site
198214001615	H-loop/switch region; other site
198214001616	molybdenum-pterin binding domain; Region: Mop; TIGR00638
198214001617	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
198214001618	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214001619	dimer interface [polypeptide binding]; other site
198214001620	conserved gate region; other site
198214001621	putative PBP binding loops; other site
198214001622	ABC-ATPase subunit interface; other site
198214001623	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214001624	substrate binding pocket [chemical binding]; other site
198214001625	membrane-bound complex binding site; other site
198214001626	hinge residues; other site
198214001627	Protein of unknown function (DUF2592); Region: DUF2592; pfam10766
198214001628	DNA-binding transcriptional regulator ModE; Provisional; Region: PRK10676
198214001629	N-terminal domain of molybdenum-binding protein [General function prediction only]; Region: ModE; COG2005
198214001630	molybdenum-pterin binding domain; Region: Mop; TIGR00638
198214001631	TOBE domain; Region: TOBE; pfam03459
198214001632	putative molybdenum transport ATP-binding protein ModF; Provisional; Region: PRK10938
198214001633	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cd00267
198214001634	Walker A/P-loop; other site
198214001635	ATP binding site [chemical binding]; other site
198214001636	Q-loop/lid; other site
198214001637	ABC transporter signature motif; other site
198214001638	Walker B; other site
198214001639	D-loop; other site
198214001640	H-loop/switch region; other site
198214001641	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214001642	Walker A/P-loop; other site
198214001643	ATP binding site [chemical binding]; other site
198214001644	Q-loop/lid; other site
198214001645	ABC transporter signature motif; other site
198214001646	Walker B; other site
198214001647	D-loop; other site
198214001648	H-loop/switch region; other site
198214001649	UDP-galactose-4-epimerase; Provisional; Region: PRK10675
198214001650	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
198214001651	NAD binding site [chemical binding]; other site
198214001652	homodimer interface [polypeptide binding]; other site
198214001653	active site
198214001654	substrate binding site [chemical binding]; other site
198214001655	galactose-1-phosphate uridylyltransferase; Provisional; Region: PRK11720
198214001656	Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme...; Region: GalT; cd00608
198214001657	dimer interface [polypeptide binding]; other site
198214001658	active site
198214001659	galactokinase; Provisional; Region: PRK05101
198214001660	Galactokinase galactose-binding signature; Region: GalKase_gal_bdg; pfam10509
198214001661	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
198214001662	GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544
198214001663	galactose mutarotase_like; Region: galactose_mutarotase_like; cd09019
198214001664	active site
198214001665	catalytic residues [active]
198214001666	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
198214001667	catalytic core [active]
198214001668	phospho-2-dehydro-3-deoxyheptonate aldolase; Validated; Region: PRK09261
198214001669	YbgS-like protein; Region: YbgS; pfam13985
198214001670	zinc transporter ZitB; Provisional; Region: PRK03557
198214001671	nicotinamide riboside transporter PnuC; Provisional; Region: PRK15397
198214001672	quinolinate synthetase; Provisional; Region: PRK09375
198214001673	tol-pal system protein YbgF; Provisional; Region: PRK10803
198214001674	Tetratricopeptide repeat; Region: TPR_6; pfam13174
198214001675	Tetratricopeptide repeat; Region: TPR_6; pfam13174
198214001676	peptidoglycan-associated outer membrane lipoprotein; Provisional; Region: PRK10802
198214001677	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
198214001678	ligand binding site [chemical binding]; other site
198214001679	translocation protein TolB; Provisional; Region: tolB; PRK03629
198214001680	TolB amino-terminal domain; Region: TolB_N; pfam04052
198214001681	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
198214001682	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
198214001683	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
198214001684	cell envelope integrity inner membrane protein TolA; Provisional; Region: tolA; PRK09510
198214001685	Double-stranded DNA-binding domain; Region: dsDNA_bind; cl00928
198214001686	TolA C-terminal; Region: TolA; pfam06519
198214001687	colicin uptake protein TolR; Provisional; Region: PRK11024
198214001688	colicin uptake protein TolQ; Provisional; Region: PRK10801
198214001689	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
198214001690	active site
198214001691	hypothetical protein; Provisional; Region: PRK10588
198214001692	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003
198214001693	Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]; Region: AppB; COG1294
198214001694	cytochrome d terminal oxidase subunit 1; Provisional; Region: PRK15097
198214001695	alpha-mannosidase; Provisional; Region: PRK09819
198214001696	N-terminal catalytic domain of Escherichia coli alpha-mannosidase MngB and its bacterial homologs; glycoside hydrolase family 38 (GH38); Region: GH38N_AMII_EcMngB_like; cd10815
198214001697	active site
198214001698	metal binding site [ion binding]; metal-binding site
198214001699	catalytic site [active]
198214001700	Alpha mannosidase, middle domain; Region: Alpha-mann_mid; smart00872
198214001701	Glycosyl hydrolases family 38 C-terminal domain; Region: Glyco_hydro_38C; pfam07748
198214001702	PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional; Region: PRK09765
198214001703	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214001704	active site
198214001705	phosphorylation site [posttranslational modification]
198214001706	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
198214001707	active site
198214001708	P-loop; other site
198214001709	phosphorylation site [posttranslational modification]
198214001710	Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]; Region: FruA; COG1299
198214001711	DNA-binding transcriptional repressor MngR; Provisional; Region: PRK09764
198214001712	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214001713	DNA-binding site [nucleotide binding]; DNA binding site
198214001714	UTRA domain; Region: UTRA; pfam07702
198214001715	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
198214001716	CoA binding domain; Region: CoA_binding; pfam02629
198214001717	CoA-ligase; Region: Ligase_CoA; pfam00549
198214001718	succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696
198214001719	ATP-grasp domain; Region: ATP-grasp_2; pfam08442
198214001720	CoA-ligase; Region: Ligase_CoA; pfam00549
198214001721	dihydrolipoamide succinyltransferase; Validated; Region: PRK05704
198214001722	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
198214001723	E3 interaction surface; other site
198214001724	lipoyl attachment site [posttranslational modification]; other site
198214001725	e3 binding domain; Region: E3_binding; pfam02817
198214001726	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
198214001727	2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404
198214001728	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
198214001729	TPP-binding site [chemical binding]; other site
198214001730	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
198214001731	dimer interface [polypeptide binding]; other site
198214001732	PYR/PP interface [polypeptide binding]; other site
198214001733	TPP binding site [chemical binding]; other site
198214001734	succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950
198214001735	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
198214001736	4Fe-4S dicluster domain; Region: Fer4_17; pfam13534
198214001737	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK08958
198214001738	L-aspartate oxidase; Provisional; Region: PRK06175
198214001739	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
198214001740	Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. E. coli SQR, a member of this subfamily, reduces the...; Region: SQR_TypeC_SdhD; cd03494
198214001741	SdhC subunit interface [polypeptide binding]; other site
198214001742	proximal heme binding site [chemical binding]; other site
198214001743	cardiolipin binding site; other site
198214001744	Iron-sulfur protein interface; other site
198214001745	proximal quinone binding site [chemical binding]; other site
198214001746	Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the...; Region: SQR_TypeC_SdhC; cd03499
198214001747	Iron-sulfur protein interface; other site
198214001748	proximal quinone binding site [chemical binding]; other site
198214001749	SdhD (CybS) interface [polypeptide binding]; other site
198214001750	proximal heme binding site [chemical binding]; other site
198214001751	Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114
198214001752	Citrate synthase [Energy production and conversion]; Region: GltA; COG0372
198214001753	dimer interface [polypeptide binding]; other site
198214001754	active site
198214001755	citrylCoA binding site [chemical binding]; other site
198214001756	NADH binding [chemical binding]; other site
198214001757	cationic pore residues; other site
198214001758	oxalacetate/citrate binding site [chemical binding]; other site
198214001759	coenzyme A binding site [chemical binding]; other site
198214001760	catalytic triad [active]
198214001761	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214001762	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
198214001763	PapC N-terminal domain; Region: PapC_N; pfam13954
198214001764	Outer membrane usher protein; Region: Usher; pfam00577
198214001765	PapC C-terminal domain; Region: PapC_C; pfam13953
198214001766	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
198214001767	Pili and flagellar-assembly chaperone, PapD N-terminal domain; Region: PapD_N; pfam00345
198214001768	Pili assembly chaperone PapD, C-terminal domain; Region: PapD_C; pfam02753
198214001769	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786935 (363 aa). BLAST with identity of 96% in 369 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214001770	Putative ammonia monooxygenase [General function prediction only]; Region: AbrB; COG3180
198214001771	membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082
198214001772	membrane protein AbrB duplication; Region: Gneg_AbrB_dup; TIGR03082
198214001773	endonuclease VIII; Provisional; Region: PRK10445
198214001774	N-terminal domain of Escherichia coli Nei/endonuclease VIII and related DNA glycosylases; Region: EcNei-like_N; cd08965
198214001775	DNA binding site [nucleotide binding]
198214001776	catalytic residue [active]
198214001777	putative catalytic residues [active]
198214001778	H2TH interface [polypeptide binding]; other site
198214001779	intercalation triad [nucleotide binding]; other site
198214001780	substrate specificity determining residue; other site
198214001781	Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831
198214001782	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
198214001783	Escherichia coli putative lactam utilization protein YbgL and similar proteins; Region: LamB_YcsF_YbgL_like; cd10800
198214001784	putative active site [active]
198214001785	Similar to Escherichia coli K12  carboxylase gi: 1786930 (311 aa). BLAST with identity of 97% in 310 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001786	Allophanate hydrolase subunit 1; Region: AHS1; cl19310
198214001787	metal-binding protein; Provisional; Region: PRK10799
198214001788	dipeptide/tripeptide permease D; Provisional; Region: PRK15462
198214001789	Dipeptide/tripeptide permease [Amino acid transport and metabolism]; Region: PTR2; COG3104
198214001790	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214001791	putative substrate translocation pore; other site
198214001792	deoxyribodipyrimidine photolyase; Provisional; Region: PRK10674
198214001793	DNA photolyase; Region: DNA_photolyase; pfam00875
198214001794	FAD binding domain of DNA photolyase; Region: FAD_binding_7; pfam03441
198214001795	hypothetical protein; Provisional; Region: PRK10167
198214001796	Toxin SymE, type I toxin-antitoxin system; Region: SymE_toxin; pfam08845
198214001797	PAAR motif; Region: PAAR_motif; cl15808
198214001798	Elongation factor 1 gamma, conserved domain; Region: EF1G; pfam00647
198214001799	Rhs family protein [Cell envelope biogenesis, outer membrane]; Region: RhsA; COG3209
198214001800	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
198214001801	YD repeat (two copies); Region: YD_repeat_2x; TIGR01643
198214001802	RHS Repeat; Region: RHS_repeat; pfam05593
198214001803	RHS Repeat; Region: RHS_repeat; pfam05593
198214001804	RHS Repeat; Region: RHS_repeat; pfam05593
198214001805	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214001806	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214001807	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214001808	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214001809	Protein of unknown function (DUF2517); Region: DUF2517; pfam10725
198214001810	potassium-transporting ATPase subunit A; Provisional; Region: PRK05482
198214001811	'Similar to Escherichia coli K12 ATPase of high-affinity potassium transport system, B chain gi: 1786914 (683 aa). BLAST with identity of 97% in 683 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214001812	Similar to Escherichia coli K12 sensor for high-affinity potassium transport system gi: 1786912 (895 aa). BLAST with identity of 97% in 894 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001813	Similar to Escherichia coli K12 regulator of kdp operon (transcriptional effector) gi: 1786911 (226 aa). BLAST with identity of 96% in 229 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001814	'Similar to Escherichia coli K12 ornithine decarboxylase isozyme, inducible gi: 1786909 (733 aa). BLAST with identity of 95% in 688 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214001815	putrescine transporter; Provisional; Region: potE; PRK10655
198214001816	Tryptophan/tyrosine permease family; Region: Trp_Tyr_perm; cl17316
198214001817	phosphoglucomutase, alpha-D-glucose phosphate-specific; Region: pgm; TIGR01132
198214001818	This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl...; Region: PGM_like3; cd05801
198214001819	active site
198214001820	substrate binding site [chemical binding]; other site
198214001821	metal binding site [ion binding]; metal-binding site
198214001822	replication initiation regulator SeqA; Provisional; Region: PRK11187
198214001823	acyl-CoA esterase; Provisional; Region: PRK10673
198214001824	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
198214001825	LexA regulated protein; Provisional; Region: PRK11675
198214001826	flavodoxin FldA; Validated; Region: PRK09267
198214001827	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
198214001828	metal binding site 2 [ion binding]; metal-binding site
198214001829	putative DNA binding helix; other site
198214001830	metal binding site 1 [ion binding]; metal-binding site
198214001831	dimer interface [polypeptide binding]; other site
198214001832	structural Zn2+ binding site [ion binding]; other site
198214001833	YbfN-like lipoprotein; Region: YbfN; pfam13982
198214001834	outer membrane porin, OprD family; Region: OprD; pfam03573
198214001835	glutaminyl-tRNA synthetase; Provisional; Region: PRK05347
198214001836	catalytic core domain of glutaminyl-tRNA synthetase; Region: GlnRS_core; cd00807
198214001837	active site
198214001838	HIGH motif; other site
198214001839	KMSKS motif; other site
198214001840	tRNA synthetases class I (E and Q), anti-codon binding domain; Region: tRNA-synt_1c_C; pfam03950
198214001841	PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional; Region: PRK10255
198214001842	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
198214001843	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214001844	active site turn [active]
198214001845	phosphorylation site [posttranslational modification]
198214001846	PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_glc; cd00210
198214001847	HPr interaction site; other site
198214001848	glycerol kinase (GK) interaction site [polypeptide binding]; other site
198214001849	active site
198214001850	phosphorylation site [posttranslational modification]
198214001851	GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or...; Region: GlcN6P_deaminase; cd01399
198214001852	active site
198214001853	trimer interface [polypeptide binding]; other site
198214001854	allosteric site; other site
198214001855	active site lid [active]
198214001856	hexamer (dimer of trimers) interface [polypeptide binding]; other site
198214001857	N-acetylglucosamine-6-phosphate deacetylase; Region: nagA; TIGR00221
198214001858	N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to...; Region: NagA; cd00854
198214001859	active site
198214001860	dimer interface [polypeptide binding]; other site
198214001861	MarR family; Region: MarR_2; cl17246
198214001862	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
198214001863	ROK family; Region: ROK; pfam00480
198214001864	Similar to Escherichia coli K12 N-acetylglucosamine metabolism  gi: 1786890 (251 aa). BLAST with identity of 97% in 251 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001865	asparagine synthetase B; Provisional; Region: asnB; PRK09431
198214001866	Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a...; Region: AsnB; cd00712
198214001867	active site
198214001868	dimer interface [polypeptide binding]; other site
198214001869	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
198214001870	Ligand Binding Site [chemical binding]; other site
198214001871	Molecular Tunnel; other site
198214001872	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed; Region: ubiF; PRK08020
198214001873	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Region: Ubi-OHases; TIGR01988
198214001874	(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14325
198214001875	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
198214001876	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214001877	FeS/SAM binding site; other site
198214001878	TRAM domain; Region: TRAM; pfam01938
198214001879	Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702
198214001880	PhoH-like protein; Region: PhoH; pfam02562
198214001881	metal-binding heat shock protein; Provisional; Region: PRK00016
198214001882	magnesium/cobalt efflux protein CorC; Provisional; Region: PRK15094
198214001883	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
198214001884	Transporter associated domain; Region: CorC_HlyC; smart01091
198214001885	apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302
198214001886	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
198214001887	putative active site [active]
198214001888	catalytic triad [active]
198214001889	putative dimer interface [polypeptide binding]; other site
198214001890	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
198214001891	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214001892	substrate binding pocket [chemical binding]; other site
198214001893	membrane-bound complex binding site; other site
198214001894	hinge residues; other site
198214001895	ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765
198214001896	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214001897	dimer interface [polypeptide binding]; other site
198214001898	conserved gate region; other site
198214001899	putative PBP binding loops; other site
198214001900	ABC-ATPase subunit interface; other site
198214001901	ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765
198214001902	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214001903	dimer interface [polypeptide binding]; other site
198214001904	conserved gate region; other site
198214001905	putative PBP binding loops; other site
198214001906	ABC-ATPase subunit interface; other site
198214001907	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
198214001908	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
198214001909	Walker A/P-loop; other site
198214001910	ATP binding site [chemical binding]; other site
198214001911	Q-loop/lid; other site
198214001912	ABC transporter signature motif; other site
198214001913	Walker B; other site
198214001914	D-loop; other site
198214001915	H-loop/switch region; other site
198214001916	nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the...; Region: nuc_hydro_IU_UC_XIUA; cd02651
198214001917	active site
198214001918	tetramer interface [polypeptide binding]; other site
198214001919	Similar to Escherichia coli K12  dnaK protein gi: 1786870 (557 aa). BLAST with identity of 98% in 554 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214001920	DnaJ domain; Region: DnaJ; pfam00226
198214001921	Protein of unknown function (DUF1266); Region: DUF1266; pfam06889
198214001922	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
198214001923	Sel1-like repeats; Region: SEL1; smart00671
198214001924	Sel1-like repeats; Region: SEL1; smart00671
198214001925	Sel1-like repeats; Region: SEL1; smart00671
198214001926	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
198214001927	HSP70 interaction site [polypeptide binding]; other site
198214001928	Protein of unknown function (DUF1266); Region: DUF1266; pfam06889
198214001929	Sel1-like repeats; Region: SEL1; smart00671
198214001930	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
198214001931	Sel1-like repeats; Region: SEL1; smart00671
198214001932	Sel1-like repeats; Region: SEL1; smart00671
198214001933	Sel1-like repeats; Region: SEL1; smart00671
198214001934	Sel1-like repeats; Region: SEL1; smart00671
198214001935	Sel1-like repeats; Region: SEL1; smart00671
198214001936	Sel1-like repeats; Region: SEL1; smart00671
198214001937	hypothetical protein; Provisional; Region: PRK11032
198214001938	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
198214001939	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
198214001940	active site
198214001941	HIGH motif; other site
198214001942	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
198214001943	KMSKS motif; other site
198214001944	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
198214001945	tRNA binding surface [nucleotide binding]; other site
198214001946	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
198214001947	LPS-assembly lipoprotein RlpB; Provisional; Region: PRK10796
198214001948	DNA polymerase III subunit delta; Reviewed; Region: holA; PRK05574
198214001949	DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144
198214001950	Processivity clamp loader gamma complex DNA pol III C-term; Region: DNA_pol3_delt_C; pfam14840
198214001951	Nicotinamide/nicotinate mononucleotide adenylyltransferase; Region: NMNAT; cd02165
198214001952	active site
198214001953	(T/H)XGH motif; other site
198214001954	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
198214001955	catalytic core [active]
198214001956	ribosome-associated protein; Provisional; Region: PRK11538
198214001957	rRNA large subunit m3Psi methyltransferase RlmH; Region: tRNA_RlmH_YbeA; TIGR00246
198214001958	penicillin-binding protein 2; Provisional; Region: PRK10795
198214001959	Penicillin-binding Protein dimerization domain; Region: PBP_dimer; pfam03717
198214001960	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
198214001961	cell wall shape-determining protein; Provisional; Region: PRK10794
198214001962	rare lipoprotein A; Provisional; Region: PRK10672
198214001963	Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; pfam03330
198214001964	Sporulation related domain; Region: SPOR; pfam05036
198214001965	D-alanyl-D-alanine carboxypeptidase fraction A; Provisional; Region: PRK10793
198214001966	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768
198214001967	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; smart00936
198214001968	hypothetical protein; Provisional; Region: PRK04998
198214001969	lipoate-protein ligase B; Provisional; Region: PRK14342
198214001970	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11482
198214001971	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214001972	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214001973	dimerization interface [polypeptide binding]; other site
198214001974	lipoyl synthase; Provisional; Region: PRK05481
198214001975	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214001976	FeS/SAM binding site; other site
198214001977	twin arginine translocase protein E; Validated; Region: tatE; PRK03625
198214001978	Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases); Region: nitrilase_3; cd07581
198214001979	putative active site [active]
198214001980	catalytic triad [active]
198214001981	putative dimer interface [polypeptide binding]; other site
198214001982	chromosome condensation membrane protein; Provisional; Region: PRK14196
198214001983	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
198214001984	DNA-binding site [nucleotide binding]; DNA binding site
198214001985	RNA-binding motif; other site
198214001986	phospholipid:lipid A palmitoyltransferase; Provisional; Region: pagP; PRK11045
198214001987	C4-dicarboxylate transporter DcuC; Provisional; Region: dcuC; PRK10654
198214001988	C4-dicarboxylate transporter [Energy production and conversion]; Region: DcuC; COG3069
198214001989	Similar to Escherichia coli K12 sequence similarity to Shigella regulator gi: 1786838 (227 aa). BLAST with identity of 98% in 113 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214001990	Mu DNA-binding domain; Region: HTH_Tnp_Mu_1; pfam02316
198214001991	Mu DNA-binding domain; Region: HTH_Tnp_Mu_1; pfam02316
198214001992	Mu DNA binding, I gamma subdomain; Region: HTH_Tnp_Mu_2; pfam09039
198214001993	Bacteriophage Mu transposase; Region: DDE_2; pfam02914
198214001994	Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299
198214001995	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214001996	Transposase; Region: HTH_Tnp_1; pfam01527
198214001997	putative transposase OrfB; Reviewed; Region: PHA02517
198214001998	HTH-like domain; Region: HTH_21; pfam13276
198214001999	Integrase core domain; Region: rve; pfam00665
198214002000	Integrase core domain; Region: rve_3; pfam13683
198214002001	Domain of unknown function (DUF336); Region: DUF336; cl01249
198214002002	Uncharacterized protein conserved in bacteria (DUF2184); Region: DUF2184; pfam09950
198214002003	Uncharacterized protein conserved in bacteria (DUF2213); Region: DUF2213; pfam09979
198214002004	Phage Mu protein F like protein; Region: Phage_Mu_F; cl10072
198214002005	Protein of unknown function (DUF1073); Region: DUF1073; pfam06381
198214002006	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214002007	HTH-like domain; Region: HTH_21; pfam13276
198214002008	Integrase core domain; Region: rve; pfam00665
198214002009	Integrase core domain; Region: rve_3; pfam13683
198214002010	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214002011	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002012	Phage terminase large subunit; Region: Terminase_3; cl12054
198214002013	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
198214002014	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002015	Transposase; Region: HTH_Tnp_1; cl17663
198214002016	putative transposase OrfB; Reviewed; Region: PHA02517
198214002017	HTH-like domain; Region: HTH_21; pfam13276
198214002018	Integrase core domain; Region: rve; pfam00665
198214002019	Integrase core domain; Region: rve_3; pfam13683
198214002020	Protein of unknown function (DUF1133); Region: DUF1133; pfam06576
198214002021	putative transposase OrfB; Reviewed; Region: PHA02517
198214002022	HTH-like domain; Region: HTH_21; pfam13276
198214002023	Integrase core domain; Region: rve; pfam00665
198214002024	Integrase core domain; Region: rve_3; pfam13683
198214002025	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002026	Transposase; Region: HTH_Tnp_1; pfam01527
198214002027	TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_primases; cd01029
198214002028	active site
198214002029	metal binding site [ion binding]; metal-binding site
198214002030	interdomain interaction site; other site
198214002031	Hint (Hedgehog/Intein) domain N-terminal region; Region: HintN; smart00306
198214002032	Hom_end-associated Hint; Region: Hom_end_hint; pfam05203
198214002033	LAGLIDADG-like domain; Region: LAGLIDADG_3; pfam14528
198214002034	putative transposase OrfB; Reviewed; Region: PHA02517
198214002035	HTH-like domain; Region: HTH_21; pfam13276
198214002036	Integrase core domain; Region: rve; pfam00665
198214002037	Integrase core domain; Region: rve_3; pfam13683
198214002038	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002039	Transposase; Region: HTH_Tnp_1; cl17663
198214002040	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214002041	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
198214002042	Walker A motif; other site
198214002043	ATP binding site [chemical binding]; other site
198214002044	Walker B motif; other site
198214002045	arginine finger; other site
198214002046	replicative DNA helicase; Region: DnaB; TIGR00665
198214002047	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
198214002048	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
198214002049	Walker A motif; other site
198214002050	ATP binding site [chemical binding]; other site
198214002051	Walker B motif; other site
198214002052	DNA binding loops [nucleotide binding]
198214002053	Phage antitermination protein Q; Region: Phage_antitermQ; pfam06530
198214002054	Lysis protein S; Region: Lysis_S; pfam04971
198214002055	Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell...; Region: endolysin_autolysin; cd00737
198214002056	catalytic residues [active]
198214002057	Bacteriophage Rz lysis protein; Region: Phage_lysis; pfam03245
198214002058	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002059	Transposase; Region: HTH_Tnp_1; pfam01527
198214002060	Transposase; Region: HTH_Tnp_1; cl17663
198214002061	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002062	putative transposase OrfB; Reviewed; Region: PHA02517
198214002063	HTH-like domain; Region: HTH_21; pfam13276
198214002064	Integrase core domain; Region: rve; pfam00665
198214002065	Integrase core domain; Region: rve_3; pfam13683
198214002066	Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]; Region: COG4220
198214002067	Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: SppA; COG0616
198214002068	Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_36K_type; cd07022
198214002069	tandem repeat interface [polypeptide binding]; other site
198214002070	oligomer interface [polypeptide binding]; other site
198214002071	active site residues [active]
198214002072	Bacteriophage lambda head decoration protein D; Region: HDPD; pfam02924
198214002073	Phage major capsid protein E; Region: Phage_cap_E; pfam03864
198214002074	DNA packaging protein FI; Region: Packaging_FI; pfam14000
198214002075	Phage Head-Tail Attachment; Region: Phage_attach; pfam05354
198214002076	Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763
198214002077	Phage minor tail protein U; Region: Phage_tail_U; pfam06141
198214002078	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
198214002079	Phage tail protein; Region: Phage_tail_3; pfam08813
198214002080	Bacterial Ig-like domain (group 2); Region: Big_2; pfam02368
198214002081	Bacteriophage lambda minor tail protein (GpG); Region: Phage_lambd_GpG; cl06106
198214002082	Minor tail protein T; Region: Phage_tail_T; pfam06223
198214002083	Phage-related minor tail protein [Function unknown]; Region: COG5281
198214002084	Prophage tail length tape measure protein; Region: TMP_2; pfam06791
198214002085	Menaquinone biosynthesis; Region: VitK2_biosynth; cl17475
198214002086	Lambda phage tail tape-measure protein (Tape_meas_lam_C); Region: Tape_meas_lam_C; cl19901
198214002087	Phage-related protein [Function unknown]; Region: COG4718
198214002088	Phage-related protein [Function unknown]; Region: gp18; COG4672
198214002089	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains; Region: MPN_NLPC_P60; cd08073
198214002090	MPN+ (JAMM) motif; other site
198214002091	Zinc-binding site [ion binding]; other site
198214002092	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
198214002093	NlpC/P60 family; Region: NLPC_P60; cl17555
198214002094	Phage-related protein, tail component [Function unknown]; Region: COG4723
198214002095	Phage-related protein, tail component [Function unknown]; Region: COG4733
198214002096	Putative phage tail protein; Region: Phage-tail_3; pfam13550
198214002097	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
198214002098	Interdomain contacts; other site
198214002099	Cytokine receptor motif; other site
198214002100	Domain of unknown function (DUF1983); Region: DUF1983; pfam09327
198214002101	Fibronectin type III protein; Region: DUF3672; pfam12421
198214002102	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
198214002103	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214002104	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214002105	Leucine Rich repeats (2 copies); Region: LRR_4; pfam12799
198214002106	Leucine rich repeat; Region: LRR_8; pfam13855
198214002107	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214002108	PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea; Region: PEBP_bact_arch; cd00865
198214002109	substrate binding site [chemical binding]; other site
198214002110	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Region: BioA; COG0161
198214002111	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
198214002112	inhibitor-cofactor binding pocket; inhibition site
198214002113	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214002114	catalytic residue [active]
198214002115	biotin synthase; Provisional; Region: PRK15108
198214002116	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214002117	FeS/SAM binding site; other site
198214002118	Biotin and Thiamin Synthesis associated domain; Region: BATS; smart00876
198214002119	8-amino-7-oxononanoate synthase; Region: bioF; TIGR00858
198214002120	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
198214002121	substrate-cofactor binding pocket; other site
198214002122	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214002123	catalytic residue [active]
198214002124	biotin biosynthesis protein BioC; Region: BioC; TIGR02072
198214002125	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214002126	S-adenosylmethionine binding site [chemical binding]; other site
198214002127	AAA domain; Region: AAA_26; pfam13500
198214002128	Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and...; Region: DTBS; cd03109
198214002129	active site
198214002130	ADP binding site [chemical binding]; other site
198214002131	excinuclease ABC subunit B; Provisional; Region: PRK05298
198214002132	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214002133	ATP binding site [chemical binding]; other site
198214002134	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214002135	nucleotide binding region [chemical binding]; other site
198214002136	ATP-binding site [chemical binding]; other site
198214002137	Ultra-violet resistance protein B; Region: UvrB; pfam12344
198214002138	UvrB/uvrC motif; Region: UVR; pfam02151
198214002139	family of mostly uncharacterized proteins similar to B.subtilis YvcK; Region: YvcK_like; cd07187
198214002140	phosphate binding site [ion binding]; other site
198214002141	putative substrate binding pocket [chemical binding]; other site
198214002142	dimer interface [polypeptide binding]; other site
198214002143	molybdenum cofactor biosynthesis protein A; Reviewed; Region: moaA; PRK00164
198214002144	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214002145	FeS/SAM binding site; other site
198214002146	Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463
198214002147	MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea; Region: MogA_MoaB; cd00886
198214002148	MPT binding site; other site
198214002149	trimer interface [polypeptide binding]; other site
198214002150	MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine...; Region: MoaC_PE; cd01420
198214002151	trimer interface [polypeptide binding]; other site
198214002152	dimer interface [polypeptide binding]; other site
198214002153	putative active site [active]
198214002154	Ubiquitin domain of MoaD-like proteins; Region: MoaD; cd00754
198214002155	MoaE interaction surface [polypeptide binding]; other site
198214002156	MoeB interaction surface [polypeptide binding]; other site
198214002157	thiocarboxylated glycine; other site
198214002158	MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756
198214002159	MoaE homodimer interface [polypeptide binding]; other site
198214002160	MoaD interaction [polypeptide binding]; other site
198214002161	active site residues [active]
198214002162	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
198214002163	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
198214002164	Predicted integral membrane protein [Function unknown]; Region: COG0392
198214002165	cardiolipin synthase 2; Provisional; Region: PRK11263
198214002166	Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins; Region: PLDc_CLS_1; cd09110
198214002167	putative active site [active]
198214002168	catalytic site [active]
198214002169	Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins; Region: PLDc_ybhO_like_2; cd09159
198214002170	putative active site [active]
198214002171	catalytic site [active]
198214002172	Metal-dependent hydrolase [General function prediction only]; Region: ElsH; COG3568
198214002173	putative catalytic site [active]
198214002174	putative metal binding site [ion binding]; other site
198214002175	putative phosphate binding site [ion binding]; other site
198214002176	Putative inner membrane protein YbhQ; Region: YbhQ; pfam11076
198214002177	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
198214002178	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
198214002179	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
198214002180	ABC-2 family transporter protein; Region: ABC2_membrane_2; pfam12679
198214002181	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
198214002182	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
198214002183	Walker A/P-loop; other site
198214002184	ATP binding site [chemical binding]; other site
198214002185	Q-loop/lid; other site
198214002186	ABC transporter signature motif; other site
198214002187	Walker B; other site
198214002188	D-loop; other site
198214002189	H-loop/switch region; other site
198214002190	ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]; Region: NatA; COG4555
198214002191	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
198214002192	Walker A/P-loop; other site
198214002193	ATP binding site [chemical binding]; other site
198214002194	Q-loop/lid; other site
198214002195	ABC transporter signature motif; other site
198214002196	Walker B; other site
198214002197	D-loop; other site
198214002198	H-loop/switch region; other site
198214002199	putative efflux pump membrane fusion protein; Provisional; Region: PRK03598
198214002200	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214002201	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214002202	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11552
198214002203	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214002204	Domain of unknown function (DUF1956); Region: DUF1956; pfam09209
198214002205	ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837
198214002206	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
198214002207	ATP binding site [chemical binding]; other site
198214002208	Mg++ binding site [ion binding]; other site
198214002209	motif III; other site
198214002210	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214002211	nucleotide binding region [chemical binding]; other site
198214002212	ATP-binding site [chemical binding]; other site
198214002213	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3236
198214002214	ATP-dependent DNA helicase DinG; Provisional; Region: dinG; PRK11747
198214002215	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
198214002216	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
198214002217	glycosyl transferase family protein; Provisional; Region: PRK08136
198214002218	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
198214002219	putative dehydrogenase; Provisional; Region: PRK10098
198214002220	hypothetical protein; Provisional; Region: PRK10259
198214002221	hypothetical protein; Provisional; Region: PRK11019
198214002222	Uncharacterized iron-regulated protein [Function unknown]; Region: PiuC; COG3128
198214002223	Similar to Escherichia coli K12  outer membrane receptor for iron transport gi: 1787024 (761 aa). BLAST with identity of 98% in 1240 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214002224	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214002225	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214002226	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214002227	Protein of unknown function (DUF1471); Region: DUF1471; cl11507
198214002228	23S rRNA mA1618 methyltransferase; Provisional; Region: PRK11727
198214002229	putative mechanosensitive channel protein; Provisional; Region: PRK11465
198214002230	Mechanosensitive ion channel; Region: MS_channel; pfam00924
198214002231	glutamine ABC transporter ATP-binding protein; Reviewed; Region: glnQ; PRK09493
198214002232	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
198214002233	Walker A/P-loop; other site
198214002234	ATP binding site [chemical binding]; other site
198214002235	Q-loop/lid; other site
198214002236	ABC transporter signature motif; other site
198214002237	Walker B; other site
198214002238	D-loop; other site
198214002239	H-loop/switch region; other site
198214002240	glutamine ABC transporter permease protein; Reviewed; Region: glnP; PRK09494
198214002241	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002242	dimer interface [polypeptide binding]; other site
198214002243	conserved gate region; other site
198214002244	putative PBP binding loops; other site
198214002245	ABC-ATPase subunit interface; other site
198214002246	glutamine ABC transporter periplasmic protein; Reviewed; Region: glnH; PRK09495
198214002247	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214002248	substrate binding pocket [chemical binding]; other site
198214002249	membrane-bound complex binding site; other site
198214002250	hinge residues; other site
198214002251	Ferritin-like domain; Region: Ferritin; pfam00210
198214002252	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
198214002253	dimerization interface [polypeptide binding]; other site
198214002254	DPS ferroxidase diiron center [ion binding]; other site
198214002255	ion pore; other site
198214002256	threonine and homoserine efflux system; Provisional; Region: PRK10532
198214002257	EamA-like transporter family; Region: EamA; pfam00892
198214002258	outer membrane protein X; Provisional; Region: ompX; PRK09408
198214002259	Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]; Region: COG2194
198214002260	Sulfatase; Region: Sulfatase; pfam00884
198214002261	manganese transport regulator MntR; Provisional; Region: PRK11050
198214002262	Iron dependent repressor, N-terminal DNA binding domain; Region: Fe_dep_repress; pfam01325
198214002263	Iron dependent repressor, metal binding and dimerization domain; Region: Fe_dep_repr_C; pfam02742
198214002264	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
198214002265	Putative anion permease YbiR.  Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate...; Region: YbiR_permease; cd01117
198214002266	transmembrane helices; other site
198214002267	L,D-transpeptidase; Provisional; Region: PRK10260
198214002268	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
198214002269	ABC transporter ATP-binding protein; Provisional; Region: PRK15064
198214002270	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214002271	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214002272	Walker A/P-loop; other site
198214002273	ATP binding site [chemical binding]; other site
198214002274	ABC transporter signature motif; other site
198214002275	Walker B; other site
198214002276	ABC transporter; Region: ABC_tran_2; pfam12848
198214002277	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214002278	Protein of unknown function (DUF1479); Region: DUF1479; pfam07350
198214002279	Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; Region: Cof-subfamily; TIGR00099
198214002280	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214002281	active site
198214002282	motif I; other site
198214002283	motif II; other site
198214002284	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214002285	glycyl radical enzyme, PFL2/glycerol dehydratase family; Region: PFL2-3; TIGR01774
198214002286	Pyruvate formate lyase 2 and related enzymes; Region: PFL2_DhaB_BssA; cd01677
198214002287	dimer interface [polypeptide binding]; other site
198214002288	active site
198214002289	glycine loop; other site
198214002290	glycyl-radical enzyme activating protein family; Region: PFLE_PFLC; TIGR02494
198214002291	4Fe-4S single cluster domain; Region: Fer4_13; pfam13370
198214002292	DRE-TIM metallolyase superfamily; Region: DRE_TIM_metallolyase; cl18962
198214002293	Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea; Region: Transaldolase_FSA; cd00956
198214002294	active site
198214002295	intersubunit interactions; other site
198214002296	catalytic residue [active]
198214002297	molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690
198214002298	ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD...; Region: ThiF_MoeB_HesA_family; cd00757
198214002299	ATP binding site [chemical binding]; other site
198214002300	substrate interface [chemical binding]; other site
198214002301	molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680
198214002302	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
198214002303	dimer interface [polypeptide binding]; other site
198214002304	putative functional site; other site
198214002305	putative MPT binding site; other site
198214002306	L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta...; Region: Asparaginase_2; cd04701
198214002307	catalytic nucleophile [active]
198214002308	glutathione transporter ATP-binding protein; Provisional; Region: PRK10261
198214002309	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214002310	Walker A/P-loop; other site
198214002311	ATP binding site [chemical binding]; other site
198214002312	Q-loop/lid; other site
198214002313	ABC transporter signature motif; other site
198214002314	Walker B; other site
198214002315	D-loop; other site
198214002316	H-loop/switch region; other site
198214002317	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214002318	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214002319	Walker A/P-loop; other site
198214002320	ATP binding site [chemical binding]; other site
198214002321	Q-loop/lid; other site
198214002322	ABC transporter signature motif; other site
198214002323	Walker B; other site
198214002324	D-loop; other site
198214002325	H-loop/switch region; other site
198214002326	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214002327	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
198214002328	The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold; Region: PBP2_Ylib_like; cd08499
198214002329	glutathione ABC transporter permease GsiC; Provisional; Region: PRK15081
198214002330	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002331	dimer interface [polypeptide binding]; other site
198214002332	conserved gate region; other site
198214002333	putative PBP binding loops; other site
198214002334	ABC-ATPase subunit interface; other site
198214002335	glutathione ABC transporter permease GsiD; Provisional; Region: PRK15082
198214002336	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
198214002337	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002338	dimer interface [polypeptide binding]; other site
198214002339	conserved gate region; other site
198214002340	putative PBP binding loops; other site
198214002341	ABC-ATPase subunit interface; other site
198214002342	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787055 (783 aa). BLAST with identity of 98% in 775 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214002343	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214002344	metal binding site [ion binding]; metal-binding site
198214002345	active site
198214002346	I-site; other site
198214002347	ribosomal protein S12 methylthiotransferase; Provisional; Region: rimO; PRK14862
198214002348	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
198214002349	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214002350	FeS/SAM binding site; other site
198214002351	biofilm formation regulatory protein BssR; Reviewed; Region: bssR; PRK12302
198214002352	dehydrogenase, PQQ-dependent, s-GDH family; Region: non_repeat_PQQ; cl19645
198214002353	Glucose / Sorbosone dehydrogenase; Region: GSDH; pfam07995
198214002354	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
198214002355	GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of...; Region: GST_N_2; cd03047
198214002356	putative C-terminal domain interface [polypeptide binding]; other site
198214002357	putative GSH binding site (G-site) [chemical binding]; other site
198214002358	putative dimer interface [polypeptide binding]; other site
198214002359	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
198214002360	N-terminal domain interface [polypeptide binding]; other site
198214002361	dimer interface [polypeptide binding]; other site
198214002362	substrate binding pocket (H-site) [chemical binding]; other site
198214002363	D-alanyl-D-alanine carboxypeptidase; Region: Peptidase_S11; pfam00768
198214002364	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; smart00936
198214002365	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002366	Transposase; Region: HTH_Tnp_1; pfam01527
198214002367	putative transposase OrfB; Reviewed; Region: PHA02517
198214002368	HTH-like domain; Region: HTH_21; pfam13276
198214002369	Integrase core domain; Region: rve; pfam00665
198214002370	Integrase core domain; Region: rve_3; pfam13683
198214002371	Penicillin-binding protein 5, C-terminal domain; Region: PBP5_C; smart00936
198214002372	DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681
198214002373	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
198214002374	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214002375	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
198214002376	PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from...; Region: PAP2_BcrC_like; cd03385
198214002377	active site
198214002378	multidrug efflux system translocase MdfA; Provisional; Region: PRK15402
198214002379	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214002380	putative substrate translocation pore; other site
198214002381	Predicted hydrolases of the HAD superfamily [General function prediction only]; Region: Cof; COG0561
198214002382	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214002383	active site
198214002384	motif I; other site
198214002385	motif II; other site
198214002386	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214002387	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214002388	Fucose permease [Carbohydrate transport and metabolism]; Region: FucP; COG0738
198214002389	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214002390	putative substrate translocation pore; other site
198214002391	transcriptional repressor BetI; Region: betaine_BetI; TIGR03384
198214002392	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214002393	Bacterial transcriptional repressor; Region: TetR_C_6; pfam13977
198214002394	putative transporter; Provisional; Region: PRK04972
198214002395	Predicted Permease Membrane Region; Region: Asp-Al_Ex; pfam06826
198214002396	TrkA-C domain; Region: TrkA_C; pfam02080
198214002397	TrkA-C domain; Region: TrkA_C; pfam02080
198214002398	AspT/YidE/YbjL antiporter duplication domain; Region: YidE_YbjL_dupl; TIGR01625
198214002399	Putative inner membrane protein of Enterobacteriaceae; Region: YbjM; pfam11045
198214002400	Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide...; Region: GRX_family; cd02066
198214002401	GSH binding site [chemical binding]; other site
198214002402	catalytic residues [active]
198214002403	Protein of unknown function (DUF1418); Region: DUF1418; cl11648
198214002404	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214002405	This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as...; Region: NfsA_FRP; cd02146
198214002406	dimer interface [polypeptide binding]; other site
198214002407	NADPH bind site [chemical binding]; other site
198214002408	FMN binding site [chemical binding]; other site
198214002409	ribosomal protein S6 modification protein; Provisional; Region: PRK10446
198214002410	RimK-like ATP-grasp domain; Region: RimK; pfam08443
198214002411	Putative bacterial sensory transduction regulator; Region: YbjN; pfam10722
198214002412	putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682
198214002413	putrescine transporter ATP-binding subunit; Provisional; Region: potG; PRK11607
198214002414	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214002415	Walker A/P-loop; other site
198214002416	ATP binding site [chemical binding]; other site
198214002417	Q-loop/lid; other site
198214002418	ABC transporter signature motif; other site
198214002419	Walker B; other site
198214002420	D-loop; other site
198214002421	H-loop/switch region; other site
198214002422	TOBE domain; Region: TOBE_2; pfam08402
198214002423	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002424	dimer interface [polypeptide binding]; other site
198214002425	conserved gate region; other site
198214002426	putative PBP binding loops; other site
198214002427	ABC-ATPase subunit interface; other site
198214002428	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
198214002429	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002430	dimer interface [polypeptide binding]; other site
198214002431	conserved gate region; other site
198214002432	putative PBP binding loops; other site
198214002433	ABC-ATPase subunit interface; other site
198214002434	Protein of unknown function (DUF2593); Region: DUF2593; pfam10767
198214002435	23S rRNA (uracil-5-)-methyltransferase RumB; Region: meth_trns_rumB; TIGR02085
198214002436	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214002437	S-adenosylmethionine binding site [chemical binding]; other site
198214002438	putative ABC transporter arginine-biding protein; Provisional; Region: PRK15007
198214002439	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214002440	substrate binding pocket [chemical binding]; other site
198214002441	membrane-bound complex binding site; other site
198214002442	hinge residues; other site
198214002443	arginine transporter permease subunit ArtM; Provisional; Region: artM; PRK11122
198214002444	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002445	dimer interface [polypeptide binding]; other site
198214002446	conserved gate region; other site
198214002447	putative PBP binding loops; other site
198214002448	ABC-ATPase subunit interface; other site
198214002449	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
198214002450	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002451	dimer interface [polypeptide binding]; other site
198214002452	conserved gate region; other site
198214002453	putative PBP binding loops; other site
198214002454	ABC-ATPase subunit interface; other site
198214002455	putative ABC transporter arginine-biding protein; Provisional; Region: PRK15007
198214002456	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214002457	substrate binding pocket [chemical binding]; other site
198214002458	membrane-bound complex binding site; other site
198214002459	hinge residues; other site
198214002460	arginine transporter ATP-binding subunit; Provisional; Region: artP; PRK11124
198214002461	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214002462	Walker A/P-loop; other site
198214002463	ATP binding site [chemical binding]; other site
198214002464	Q-loop/lid; other site
198214002465	ABC transporter signature motif; other site
198214002466	Walker B; other site
198214002467	D-loop; other site
198214002468	H-loop/switch region; other site
198214002469	putative lipoprotein; Provisional; Region: PRK10533
198214002470	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
198214002471	hypothetical protein; Provisional; Region: PRK02877
198214002472	N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: ampD; COG3023
198214002473	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20...; Region: PGRP; cd06583
198214002474	amidase catalytic site [active]
198214002475	Zn binding residues [ion binding]; other site
198214002476	substrate binding site [chemical binding]; other site
198214002477	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
198214002478	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
198214002479	NAD(P) binding site [chemical binding]; other site
198214002480	active site
198214002481	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
198214002482	atypical (a) SDRs, subgroup 2; Region: SDR_a2; cd05245
198214002483	putative NAD(P) binding site [chemical binding]; other site
198214002484	putative active site [active]
198214002485	Protein of unknown function (DUF2867); Region: DUF2867; pfam11066
198214002486	Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a...; Region: TA_like; cd06502
198214002487	Beta-eliminating lyase; Region: Beta_elim_lyase; pfam01212
198214002488	tetramer interface [polypeptide binding]; other site
198214002489	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214002490	catalytic residue [active]
198214002491	pyruvate dehydrogenase; Provisional; Region: PRK09124
198214002492	Pyrimidine (PYR) binding domain of POX; Region: TPP_PYR_POX; cd07039
198214002493	PYR/PP interface [polypeptide binding]; other site
198214002494	dimer interface [polypeptide binding]; other site
198214002495	tetramer interface [polypeptide binding]; other site
198214002496	TPP binding site [chemical binding]; other site
198214002497	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
198214002498	Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates...; Region: TPP_POX; cd02014
198214002499	TPP-binding site [chemical binding]; other site
198214002500	HCP oxidoreductase, NADH-dependent; Provisional; Region: PRK10684
198214002501	Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron...; Region: FNR_iron_sulfur_binding_1; cd06215
198214002502	FAD binding pocket [chemical binding]; other site
198214002503	FAD binding motif [chemical binding]; other site
198214002504	phosphate binding motif [ion binding]; other site
198214002505	beta-alpha-beta structure motif; other site
198214002506	NAD binding pocket [chemical binding]; other site
198214002507	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214002508	catalytic loop [active]
198214002509	iron binding site [ion binding]; other site
198214002510	Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a...; Region: HCP; cd01914
198214002511	cubane metal cluster [ion binding]; other site
198214002512	hybrid metal cluster; other site
198214002513	Predicted membrane protein [Function unknown]; Region: COG2431
198214002514	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214002515	HTH-like domain; Region: HTH_21; pfam13276
198214002516	Integrase core domain; Region: rve; pfam00665
198214002517	Integrase core domain; Region: rve_3; pfam13683
198214002518	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214002519	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002520	Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal...; Region: MIP; cd00333
198214002521	amphipathic channel; other site
198214002522	Asn-Pro-Ala signature motifs; other site
198214002523	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214002524	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214002525	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214002526	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214002527	Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]; Region: COG3593
198214002528	AAA domain; Region: AAA_21; pfam13304
198214002529	TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family.  The bacteriophage P2 OLD protein, which has DNase as well as...; Region: TOPRIM_OLD; cd01026
198214002530	putative active site [active]
198214002531	putative metal-binding site [ion binding]; other site
198214002532	Protein of unknown function (DUF535); Region: DUF535; pfam04393
198214002533	macrolide transporter subunit MacA; Provisional; Region: PRK11578
198214002534	HemX; Region: HemX; cl19375
198214002535	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214002536	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214002537	macrolide transporter ATP-binding /permease protein; Provisional; Region: PRK10535
198214002538	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
198214002539	Walker A/P-loop; other site
198214002540	ATP binding site [chemical binding]; other site
198214002541	Q-loop/lid; other site
198214002542	ABC transporter signature motif; other site
198214002543	Walker B; other site
198214002544	D-loop; other site
198214002545	H-loop/switch region; other site
198214002546	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
198214002547	FtsX-like permease family; Region: FtsX; pfam02687
198214002548	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
198214002549	DNA-binding site [nucleotide binding]; DNA binding site
198214002550	RNA-binding motif; other site
198214002551	ATP-dependent Clp protease adaptor protein ClpS; Reviewed; Region: clpS; PRK00033
198214002552	ATP-dependent Clp protease ATP-binding subunit; Provisional; Region: clpA; PRK11034
198214002553	Clp amino terminal domain; Region: Clp_N; pfam02861
198214002554	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214002555	Walker A motif; other site
198214002556	ATP binding site [chemical binding]; other site
198214002557	Walker B motif; other site
198214002558	arginine finger; other site
198214002559	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214002560	Walker A motif; other site
198214002561	ATP binding site [chemical binding]; other site
198214002562	Walker B motif; other site
198214002563	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
198214002564	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
198214002565	rRNA binding site [nucleotide binding]; other site
198214002566	predicted 30S ribosome binding site; other site
198214002567	leucyl/phenylalanyl-tRNA--protein transferase; Reviewed; Region: aat; PRK00301
198214002568	cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11160
198214002569	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
198214002570	ATP-binding cassette domain of CydCD, subfamily C; Region: ABCC_cytochrome_bd; cd03247
198214002571	Walker A/P-loop; other site
198214002572	ATP binding site [chemical binding]; other site
198214002573	Q-loop/lid; other site
198214002574	ABC transporter signature motif; other site
198214002575	Walker B; other site
198214002576	D-loop; other site
198214002577	H-loop/switch region; other site
198214002578	cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11174
198214002579	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
198214002580	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214002581	Walker A/P-loop; other site
198214002582	ATP binding site [chemical binding]; other site
198214002583	Q-loop/lid; other site
198214002584	ABC transporter signature motif; other site
198214002585	Walker B; other site
198214002586	D-loop; other site
198214002587	H-loop/switch region; other site
198214002588	thioredoxin reductase; Provisional; Region: PRK10262
198214002589	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214002590	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214002591	leucine-responsive transcriptional regulator; Provisional; Region: PRK11169
198214002592	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214002593	putative DNA binding site [nucleotide binding]; other site
198214002594	putative Zn2+ binding site [ion binding]; other site
198214002595	AsnC family; Region: AsnC_trans_reg; pfam01037
198214002596	DNA translocase FtsK; Provisional; Region: PRK10263
198214002597	Domain of unknown function (DUF4117); Region: DUF4117; pfam13491
198214002598	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
198214002599	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
198214002600	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
198214002601	periplasmic chaperone LolA; Region: lolA; TIGR00547
198214002602	recombination factor protein RarA; Reviewed; Region: PRK13342
198214002603	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214002604	Walker A motif; other site
198214002605	ATP binding site [chemical binding]; other site
198214002606	Walker B motif; other site
198214002607	arginine finger; other site
198214002608	MgsA AAA+ ATPase C terminal; Region: MgsA_C; pfam12002
198214002609	seryl-tRNA synthetase; Provisional; Region: PRK05431
198214002610	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
198214002611	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
198214002612	dimer interface [polypeptide binding]; other site
198214002613	active site
198214002614	motif 1; other site
198214002615	motif 2; other site
198214002616	motif 3; other site
198214002617	DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951
198214002618	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214002619	DMSO reductase anchor subunit (DmsC); Region: DmsC; pfam04976
198214002620	YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them; Region: YcaC_related; cd01012
198214002621	catalytic triad [active]
198214002622	dimer interface [polypeptide binding]; other site
198214002623	conserved cis-peptide bond; other site
198214002624	putative MFS family transporter protein; Provisional; Region: PRK03633
198214002625	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214002626	putative substrate translocation pore; other site
198214002627	Homeodomain-like domain; Region: HTH_23; pfam13384
198214002628	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002629	Transposase; Region: HTH_Tnp_1; pfam01527
198214002630	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214002631	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214002632	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214002633	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214002634	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214002635	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214002636	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214002637	putative transposase OrfB; Reviewed; Region: PHA02517
198214002638	HTH-like domain; Region: HTH_21; pfam13276
198214002639	Integrase core domain; Region: rve; pfam00665
198214002640	Integrase core domain; Region: rve_3; pfam13683
198214002641	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002642	Transposase; Region: HTH_Tnp_1; cl17663
198214002643	Protein of unknown function (DUF1364); Region: DUF1364; pfam07102
198214002644	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002645	Transposase; Region: HTH_Tnp_1; pfam01527
198214002646	putative transposase OrfB; Reviewed; Region: PHA02517
198214002647	HTH-like domain; Region: HTH_21; pfam13276
198214002648	Integrase core domain; Region: rve; pfam00665
198214002649	Integrase core domain; Region: rve_3; pfam13683
198214002650	Protein of unknown function (DUF1367); Region: DUF1367; pfam07105
198214002651	Hok/gef family; Region: HOK_GEF; pfam01848
198214002652	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1636
198214002653	Bacterial protein of unknown function (DUF977); Region: DUF977; pfam06163
198214002654	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
198214002655	Similar to Escherichia coli K12  DNA replication factor  ref: NP_415878.1 (248 aa). BLAST with identity of 92% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214002656	Protein of unknown function (DUF1019); Region: DUF1019; pfam06254
198214002657	DNA-binding transcriptional regulator DicC; Provisional; Region: PRK09744
198214002658	transcriptional repressor DicA; Reviewed; Region: PRK09706
198214002659	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214002660	non-specific DNA binding site [nucleotide binding]; other site
198214002661	salt bridge; other site
198214002662	sequence-specific DNA binding site [nucleotide binding]; other site
198214002663	Protein of unknown function (DUF1391); Region: DUF1391; pfam07151
198214002664	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214002665	HTH-like domain; Region: HTH_21; pfam13276
198214002666	Integrase core domain; Region: rve; pfam00665
198214002667	Integrase core domain; Region: rve_3; pfam13683
198214002668	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214002669	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002670	Ash protein family; Region: Phage_ASH; pfam10554
198214002671	Phage regulatory protein Rha (Phage_pRha); Region: Phage_pRha; pfam09669
198214002672	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002673	Transposase; Region: HTH_Tnp_1; pfam01527
198214002674	putative transposase OrfB; Reviewed; Region: PHA02517
198214002675	HTH-like domain; Region: HTH_21; pfam13276
198214002676	Integrase core domain; Region: rve; pfam00665
198214002677	Integrase core domain; Region: rve_3; pfam13683
198214002678	Enterobacterial exodeoxyribonuclease VIII; Region: Exonuc_VIII; pfam06630
198214002679	putative transposase OrfB; Reviewed; Region: PHA02517
198214002680	HTH-like domain; Region: HTH_21; pfam13276
198214002681	Integrase core domain; Region: rve; pfam00665
198214002682	Integrase core domain; Region: rve_3; pfam13683
198214002683	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002684	Transposase; Region: HTH_Tnp_1; pfam01527
198214002685	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214002686	Similar to Shigella flexneri IpaH9.8  gb: AAC23714.1 (545 aa). BLAST with identity of 64% in 604 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214002687	6-phosphogluconolactonase; Provisional; Region: PRK11028
198214002688	Similar to Escherichia coli K12  transcriptional regulator LYSR-type gi: 1786984 (339 aa). BLAST with identity of 97% in 338 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214002689	PrpF protein; Region: PrpF; cl19418
198214002690	Sodium:sulfate symporter transmembrane region; Region: Na_sulph_symp; pfam00939
198214002691	anion transporter; Region: dass; TIGR00785
198214002692	transmembrane helices; other site
198214002693	putative hydratase; Provisional; Region: PRK11413
198214002694	Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle; Region: Aconitase; cl00285
198214002695	substrate binding site [chemical binding]; other site
198214002696	ligand binding site [chemical binding]; other site
198214002697	Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme...; Region: Aconitase_swivel; cl00215
198214002698	substrate binding site [chemical binding]; other site
198214002699	acyl-CoA thioesterase; Provisional; Region: PRK10531
198214002700	Pectinesterase; Region: Pectinesterase; cl01911
198214002701	putative transposase OrfB; Reviewed; Region: PHA02517
198214002702	HTH-like domain; Region: HTH_21; pfam13276
198214002703	Integrase core domain; Region: rve; pfam00665
198214002704	Integrase core domain; Region: rve_3; pfam13683
198214002705	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002706	Transposase; Region: HTH_Tnp_1; pfam01527
198214002707	pyruvate formate lyase-activating enzyme 1; Provisional; Region: pflA; PRK11145
198214002708	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214002709	FeS/SAM binding site; other site
198214002710	formate acetyltransferase 1; Region: pyr_form_ly_1; TIGR01255
198214002711	Pyruvate formate lyase 1; Region: PFL1; cd01678
198214002712	coenzyme A binding site [chemical binding]; other site
198214002713	active site
198214002714	catalytic residues [active]
198214002715	glycine loop; other site
198214002716	formate transporter; Provisional; Region: PRK10805
198214002717	uncharacterized domain; Region: TIGR00702
198214002718	Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT).  PSAT is active as...; Region: PSAT_like; cd00611
198214002719	homodimer interface [polypeptide binding]; other site
198214002720	substrate-cofactor binding pocket; other site
198214002721	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214002722	catalytic residue [active]
198214002723	3-phosphoshikimate 1-carboxyvinyltransferase; Provisional; Region: PRK02427
198214002724	Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer; Region: EPT-like; cd01554
198214002725	hinge; other site
198214002726	active site
198214002727	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214002728	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214002729	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214002730	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
198214002731	cytidylate kinase; Provisional; Region: cmk; PRK00023
198214002732	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
198214002733	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
198214002734	active site
198214002735	CMP-binding site; other site
198214002736	The sites determining sugar specificity; other site
198214002737	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
198214002738	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
198214002739	RNA binding site [nucleotide binding]; other site
198214002740	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
198214002741	RNA binding site [nucleotide binding]; other site
198214002742	S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec3; cd05688
198214002743	RNA binding site [nucleotide binding]; other site
198214002744	S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec4; cd05689
198214002745	RNA binding site [nucleotide binding]; other site
198214002746	S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec5; cd05690
198214002747	RNA binding site [nucleotide binding]; other site
198214002748	S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec6; cd05691
198214002749	RNA binding site [nucleotide binding]; other site
198214002750	Beta subunit of integration host factor (IHFB); Region: IHF_B; cd13836
198214002751	dimer interface [polypeptide binding]; other site
198214002752	DNA binding site [nucleotide binding]
198214002753	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787142 (781 aa). BLAST with identity of 98% in 779 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214002754	lipid transporter ATP-binding/permease protein; Provisional; Region: PRK11176
198214002755	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
198214002756	ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; Region: ABCC_MsbA; cd03251
198214002757	Walker A/P-loop; other site
198214002758	ATP binding site [chemical binding]; other site
198214002759	Q-loop/lid; other site
198214002760	ABC transporter signature motif; other site
198214002761	Walker B; other site
198214002762	D-loop; other site
198214002763	H-loop/switch region; other site
198214002764	tetraacyldisaccharide 4'-kinase; Reviewed; Region: lpxK; PRK00652
198214002765	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3214
198214002766	hypothetical protein; Provisional; Region: PRK11827
198214002767	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
198214002768	Ligand binding site; other site
198214002769	oligomer interface; other site
198214002770	hypothetical protein; Provisional; Region: PRK10593
198214002771	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
198214002772	putative active site [active]
198214002773	Methyltransferase domain; Region: Methyltransf_31; pfam13847
198214002774	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214002775	S-adenosylmethionine binding site [chemical binding]; other site
198214002776	condesin subunit F; Provisional; Region: PRK05260
198214002777	condesin subunit E; Provisional; Region: PRK05256
198214002778	Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: MukB; COG3096
198214002779	MukB N-terminal; Region: MukB; pfam04310
198214002780	Putative exonuclease SbcCD, C subunit; Region: SbcCD_C; pfam13558
198214002781	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214002782	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214002783	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214002784	murein L,D-transpeptidase; Provisional; Region: PRK10594
198214002785	K+ potassium transporter; Region: K_trans; cl15781
198214002786	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
198214002787	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
198214002788	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3108
198214002789	Peptidase M15; Region: Peptidase_M15_3; cl01194
198214002790	Zn-dependent hydrolases, including glyoxylases [General function prediction only]; Region: GloB; COG0491
198214002791	Aminotransferase class I and II; Region: Aminotran_1_2; pfam00155
198214002792	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214002793	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214002794	homodimer interface [polypeptide binding]; other site
198214002795	catalytic residue [active]
198214002796	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
198214002797	trimer interface [polypeptide binding]; other site
198214002798	eyelet of channel; other site
198214002799	asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932
198214002800	EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB...; Region: EcAsnRS_like_N; cd04318
198214002801	putative dimer interface [polypeptide binding]; other site
198214002802	putative anticodon binding site; other site
198214002803	Asx tRNA synthetase (AspRS/AsnRS) class II core domain.  Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as...; Region: AsxRS_core; cd00776
198214002804	homodimer interface [polypeptide binding]; other site
198214002805	motif 1; other site
198214002806	motif 2; other site
198214002807	active site
198214002808	motif 3; other site
198214002809	nicotinate phosphoribosyltransferase; Region: NAPRTase; TIGR01514
198214002810	Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting; Region: PncB_like; cd01401
198214002811	active site
198214002812	aminopeptidase N; Provisional; Region: pepN; PRK14015
198214002813	Peptidase M1 family containing Aminopeptidase N; Region: M1_APN_1; cd09600
198214002814	active site
198214002815	Zn binding site [ion binding]; other site
198214002816	aliphatic sulfonates transport ATP-binding subunit; Provisional; Region: ssuB; PRK11247
198214002817	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214002818	Walker A/P-loop; other site
198214002819	ATP binding site [chemical binding]; other site
198214002820	Q-loop/lid; other site
198214002821	ABC transporter signature motif; other site
198214002822	Walker B; other site
198214002823	D-loop; other site
198214002824	H-loop/switch region; other site
198214002825	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
198214002826	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214002827	dimer interface [polypeptide binding]; other site
198214002828	conserved gate region; other site
198214002829	putative PBP binding loops; other site
198214002830	ABC-ATPase subunit interface; other site
198214002831	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214002832	HTH-like domain; Region: HTH_21; pfam13276
198214002833	Integrase core domain; Region: rve; pfam00665
198214002834	Integrase core domain; Region: rve_3; pfam13683
198214002835	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214002836	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002837	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
198214002838	active site
198214002839	dimer interface [polypeptide binding]; other site
198214002840	non-prolyl cis peptide bond; other site
198214002841	insertion regions; other site
198214002842	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214002843	substrate binding pocket [chemical binding]; other site
198214002844	ABC transporter, substrate-binding protein, aliphatic sulfonates family; Region: SsuA_fam; TIGR01728
198214002845	membrane-bound complex binding site; other site
198214002846	hinge residues; other site
198214002847	NAD(P)H-dependent FMN reductase; Provisional; Region: PRK10569
198214002848	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214002849	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214002850	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214002851	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214002852	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214002853	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214002854	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214002855	outer membrane usher protein; Provisional; Region: PRK15193
198214002856	PapC N-terminal domain; Region: PapC_N; pfam13954
198214002857	Outer membrane usher protein; Region: Usher; pfam00577
198214002858	PapC C-terminal domain; Region: PapC_C; pfam13953
198214002859	Fimbrial protein; Region: Fimbrial; cl01416
198214002860	Fimbrial protein; Region: Fimbrial; cl01416
198214002861	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214002862	putativi pili assembly chaperone; Provisional; Region: PRK11385
198214002863	Pili and flagellar-assembly chaperone, PapD N-terminal domain; Region: PapD_N; pfam00345
198214002864	Pili assembly chaperone PapD, C-terminal domain; Region: PapD_C; pfam02753
198214002865	dihydroorotate dehydrogenase 2; Reviewed; Region: PRK05286
198214002866	Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires...; Region: DHOD_2_like; cd04738
198214002867	quinone interaction residues [chemical binding]; other site
198214002868	active site
198214002869	catalytic residues [active]
198214002870	FMN binding site [chemical binding]; other site
198214002871	substrate binding site [chemical binding]; other site
198214002872	Protein of unknown function (DUF1379); Region: DUF1379; pfam07126
198214002873	Uncharacterized Fe-S protein [General function prediction only]; Region: COG3217
198214002874	MOSC N-terminal beta barrel domain; Region: MOSC_N; pfam03476
198214002875	MOSC domain; Region: MOSC; pfam03473
198214002876	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214002877	catalytic loop [active]
198214002878	iron binding site [ion binding]; other site
198214002879	23S rRNA m(2)G2445 methyltransferase; Provisional; Region: rlmL; PRK11783
198214002880	THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Region: THUMP_AdoMetMT; cd11715
198214002881	Putative RNA methylase family UPF0020; Region: UPF0020; pfam01170
198214002882	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214002883	S-adenosylmethionine binding site [chemical binding]; other site
198214002884	ABC transporter ATPase component; Reviewed; Region: PRK11147
198214002885	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214002886	ABC transporter; Region: ABC_tran_2; pfam12848
198214002887	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214002888	paraquat-inducible membrane protein A; Provisional; Region: PRK15103
198214002889	Paraquat-inducible protein A; Region: PqiA; pfam04403
198214002890	Paraquat-inducible protein A; Region: PqiA; pfam04403
198214002891	paraquat-inducible protein B; Provisional; Region: PRK10807
198214002892	mce related protein; Region: MCE; pfam02470
198214002893	mce related protein; Region: MCE; pfam02470
198214002894	mce related protein; Region: MCE; pfam02470
198214002895	DASH complex subunit Duo1; Region: DASH_Duo1; pfam08651
198214002896	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3009
198214002897	Ribosome modulation factor; Region: RMF; pfam04957
198214002898	FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA...; Region: FabA; cd01287
198214002899	active site 1 [active]
198214002900	dimer interface [polypeptide binding]; other site
198214002901	active site 2 [active]
198214002902	Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]; Region: LonB; COG1067
198214002903	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
198214002904	Ter macrodomain organizer matS-binding protein; Provisional; Region: PRK05097
198214002905	outer membrane protein A; Reviewed; Region: PRK10808
198214002906	OmpA-like transmembrane domain; Region: OmpA_membrane; pfam01389
198214002907	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
198214002908	ligand binding site [chemical binding]; other site
198214002909	cell division inhibitor SulA; Region: sula; TIGR00623
198214002910	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787193 (210 aa). BLAST with identity of 99% in 137 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214002911	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214002912	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214002913	TIGR01666 family membrane protein; Region: YCCS
198214002914	FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805
198214002915	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
198214002916	Predicted membrane protein [Function unknown]; Region: COG3304
198214002917	Domain of unknown function (DUF307); Region: DUF307; pfam03733
198214002918	Domain of unknown function (DUF307); Region: DUF307; pfam03733
198214002919	DNA helicase IV; Provisional; Region: helD; PRK11054
198214002920	DNA helicase IV / RNA helicase N terminal; Region: Helicase_IV_N; pfam12462
198214002921	Part of AAA domain; Region: AAA_19; pfam13245
198214002922	UvrD-like helicase C-terminal domain; Region: UvrD_C_2; pfam13538
198214002923	Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to...; Region: MGS; cd01422
198214002924	active site
198214002925	dimer interfaces [polypeptide binding]; other site
198214002926	catalytic residues [active]
198214002927	hypothetical protein; Provisional; Region: PRK03641
198214002928	Predicted CoA-binding protein [General function prediction only]; Region: COG1832
198214002929	heat shock protein HspQ; Provisional; Region: PRK14129
198214002930	23S rRNA m(5)C1962 methyltransferase; Provisional; Region: PRK15128
198214002931	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase; Region: PUA; smart00359
198214002932	Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; Region: RlmI_M_like; cd11572
198214002933	putative RNA binding site [nucleotide binding]; other site
198214002934	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214002935	S-adenosylmethionine binding site [chemical binding]; other site
198214002936	Acylphosphatase; Region: Acylphosphatase; cl00551
198214002937	sulfur transfer protein TusE; Provisional; Region: PRK11508
198214002938	YccA-like proteins; Region: YccA_like; cd10433
198214002939	hydrogenase (NiFe) small subunit (hydA); Region: hydA; TIGR00391
198214002940	Tat (twin-arginine translocation) pathway signal sequence; Region: TAT_signal_seq; TIGR01409
198214002941	NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; pfam01058
198214002942	NiFe/NiFeSe hydrogenase small subunit C-terminal; Region: NiFe_hyd_SSU_C; pfam14720
198214002943	hydrogenase 1 large subunit; Provisional; Region: PRK10170
198214002944	hydrogenase 1 b-type cytochrome subunit; Provisional; Region: PRK10171
198214002945	Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD...; Region: H2MP_MemB-H2up; cd06062
198214002946	coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit); Region: frhD; TIGR00130
198214002947	putative substrate-binding site; other site
198214002948	nickel binding site [ion binding]; other site
198214002949	HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the...; Region: HyaE; cd02965
198214002950	HupH hydrogenase expression protein, C-terminal conserved region; Region: HupH_C; pfam04809
198214002951	cytochrome bd-II oxidase subunit 1; Provisional; Region: PRK15035
198214002952	cytochrome bd-II oxidase subunit 2; Provisional; Region: PRK15028
198214002953	Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]; Region: AppB; COG1294
198214002954	Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Region: HP_HAP_like; cd07061
198214002955	catalytic core [active]
198214002956	Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]; Region: GumC; COG3206
198214002957	Chain length determinant protein; Region: Wzz; pfam02706
198214002958	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
198214002959	capsular exopolysaccharide family; Region: eps_fam; TIGR01007
198214002960	AAA domain; Region: AAA_31; pfam13614
198214002961	Low molecular weight phosphatase family; Region: LMWPc; cd00115
198214002962	active site
198214002963	polysaccharide export protein Wza; Provisional; Region: PRK15078
198214002964	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
198214002965	SLBB domain; Region: SLBB; pfam10531
198214002966	SLBB domain; Region: SLBB; pfam10531
198214002967	Bacterial putative lipoprotein (DUF940); Region: DUF940; pfam06082
198214002968	Capsule biosynthesis GfcC; Region: Caps_synth_GfcC; pfam06251
198214002969	Group 4 capsule polysaccharide formation lipoprotein gfcB; Region: Cap_synth_GfcB; pfam11102
198214002970	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
198214002971	DNA-binding site [nucleotide binding]; DNA binding site
198214002972	RNA-binding motif; other site
198214002973	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
198214002974	DNA-binding site [nucleotide binding]; DNA binding site
198214002975	RNA-binding motif; other site
198214002976	cold shock gene; Provisional; Region: PRK09891
198214002977	GnsA/GnsB family; Region: GnsAB; pfam08178
198214002978	quinol dehydrogenase membrane component; Provisional; Region: napH; PRK09477
198214002979	4Fe-4S binding domain; Region: Fer4_5; pfam12801
198214002980	4Fe-4S binding domain; Region: Fer4_5; pfam12801
198214002981	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214002982	TMAO reductase sytem sensor TorS; Region: TMAO_torS; TIGR02956
198214002983	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214002984	dimerization interface [polypeptide binding]; other site
198214002985	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214002986	dimer interface [polypeptide binding]; other site
198214002987	phosphorylation site [posttranslational modification]
198214002988	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214002989	ATP binding site [chemical binding]; other site
198214002990	Mg2+ binding site [ion binding]; other site
198214002991	G-X-G motif; other site
198214002992	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214002993	active site
198214002994	phosphorylation site [posttranslational modification]
198214002995	intermolecular recognition site; other site
198214002996	dimerization interface [polypeptide binding]; other site
198214002997	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
198214002998	putative binding surface; other site
198214002999	active site
198214003000	TMAO reductase system periplasmic protein TorT; Provisional; Region: PRK10936
198214003001	TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria; Region: PBP1_TorT-like; cd06306
198214003002	putative ligand binding site [chemical binding]; other site
198214003003	DNA-binding transcriptional regulator TorR; Provisional; Region: PRK10766
198214003004	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214003005	active site
198214003006	phosphorylation site [posttranslational modification]
198214003007	intermolecular recognition site; other site
198214003008	dimerization interface [polypeptide binding]; other site
198214003009	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214003010	DNA binding site [nucleotide binding]
198214003011	trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional; Region: PRK15032
198214003012	Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit [Energy production and conversion]; Region: TorC; COG3005
198214003013	Similar to Escherichia coli K12 trimethylamine N-oxide reductase subunit gi: 1787231 (849 aa). BLAST with identity of 98% in 847 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003014	Similar to Escherichia coli K12 part of trimethylamine-N-oxide oxidoreductase gi: 1787232 (200 aa). BLAST with identity of 97% in 459 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214003015	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214003016	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214003017	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214003018	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214003019	chaperone-modulator protein CbpM; Provisional; Region: PRK10265
198214003020	curved DNA-binding protein CbpA; Provisional; Region: PRK10266
198214003021	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
198214003022	HSP70 interaction site [polypeptide binding]; other site
198214003023	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
198214003024	substrate binding site [polypeptide binding]; other site
198214003025	dimer interface [polypeptide binding]; other site
198214003026	hypothetical protein; Provisional; Region: PRK09784
198214003027	Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction; Region: HP_HAP_like; cd07061
198214003028	catalytic core [active]
198214003029	hypothetical protein; Provisional; Region: PRK10174
198214003030	NAD(P)H:quinone oxidoreductase; Provisional; Region: PRK03767
198214003031	Uncharacterized flavoproteins [Energy production and conversion]; Region: FpaA; COG0426
198214003032	pyrimidine utilization transport protein G; Region: RutG; TIGR03616
198214003033	uracil-xanthine permease; Region: ncs2; TIGR00801
198214003034	pyrimidine utilization flavin reductase protein F; Region: RutF; TIGR03615
198214003035	Nitroreductase-like family 5.  A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and...; Region: Nitroreductase_5; cd02148
198214003036	putative FMN binding site [chemical binding]; other site
198214003037	pyrimidine utilization protein D; Region: RutD; TIGR03611
198214003038	Putative lysophospholipase; Region: Hydrolase_4; cl19140
198214003039	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
198214003040	homotrimer interaction site [polypeptide binding]; other site
198214003041	putative active site [active]
198214003042	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431
198214003043	catalytic triad [active]
198214003044	conserved cis-peptide bond; other site
198214003045	Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin...; Region: Alkanesulfonate_monoxygenase; cd01094
198214003046	active site
198214003047	dimer interface [polypeptide binding]; other site
198214003048	non-prolyl cis peptide bond; other site
198214003049	insertion regions; other site
198214003050	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
198214003051	HTH-type transcriptional regulator RutR; Provisional; Region: PRK15008
198214003052	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214003053	YcdC-like protein, C-terminal region; Region: TetR_C_3; pfam08362
198214003054	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214003055	Putative transposase; Region: Y2_Tnp; pfam04986
198214003056	Iron permease FTR1 family; Region: FTR1; cl00475
198214003057	inactive ferrous ion transporter periplasmic protein EfeO; Provisional; Region: PRK10378
198214003058	Cupredoxin-like domain; Region: Cupredoxin_1; pfam13473
198214003059	Imelysin; Region: Peptidase_M75; pfam09375
198214003060	Tat-translocated enzyme; Region: tat_substr_1; TIGR01412
198214003061	Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702
198214003062	hypothetical protein; Provisional; Region: PRK10536
198214003063	putative transposase OrfB; Reviewed; Region: PHA02517
198214003064	HTH-like domain; Region: HTH_21; pfam13276
198214003065	Integrase core domain; Region: rve; pfam00665
198214003066	Integrase core domain; Region: rve_2; pfam13333
198214003067	Transposase; Region: HTH_Tnp_1; cl17663
198214003068	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003069	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787266 (108 aa). BLAST with identity of 99% in 108 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214003070	Similar to Escherichia coli K12  dehydrogenase gi: 1787270 (326 aa). BLAST with identity of 99% in 326 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003071	putative hydrolase; Validated; Region: PRK09248
198214003072	Polymerase and Histidinol Phosphatase domain of Ycdx like; Region: PHP_HisPPase_Ycdx_like; cd07437
198214003073	active site
198214003074	Uncharacterized component of anaerobic dehydrogenases [General function prediction only]; Region: TorD; COG3381
198214003075	Protein of unknown function (DUF1097); Region: DUF1097; pfam06496
198214003076	'Similar to Escherichia coli K12 curli production assembly/transport component, 2nd curli operon gi: 1787274 (278 aa). BLAST with identity of 97% in 257 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214003077	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214003078	curli assembly protein CsgE; Provisional; Region: PRK10386
198214003079	DNA-binding transcriptional regulator CsgD; Provisional; Region: PRK10100
198214003080	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214003081	DNA binding residues [nucleotide binding]
198214003082	dimerization interface [polypeptide binding]; other site
198214003083	curlin minor subunit CsgB; Provisional; Region: csgB; PRK10101
198214003084	Curlin associated repeat; Region: Curlin_rpt; pfam07012
198214003085	Curlin associated repeat; Region: Curlin_rpt; pfam07012
198214003086	'Similar to Escherichia coli K12 curlin major subunit, coiled surface structures; cryptic gi: 1787279 (152 aa). BLAST with identity of 98% in 532 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
198214003087	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003088	Transposase; Region: HTH_Tnp_1; pfam01527
198214003089	Thin aggregative fimbriae synthesis protein; Region: Tafi-CsgC; cl11667
198214003090	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214003091	Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly...; Region: Macro_Appr_pase_like; cd02908
198214003092	putative ADP-ribose binding site [chemical binding]; other site
198214003093	putative active site [active]
198214003094	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
198214003095	Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111
198214003096	putative active site [active]
198214003097	catalytic site [active]
198214003098	Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113
198214003099	putative active site [active]
198214003100	catalytic site [active]
198214003101	glucans biosynthesis protein; Provisional; Region: opgC; PRK03854
198214003102	glucan biosynthesis protein G; Provisional; Region: mdoG; PRK13274
198214003103	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
198214003104	Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan; Region: Glucan_BSP_ModH; cd04191
198214003105	Ligand binding site; other site
198214003106	DXD motif; other site
198214003107	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214003108	Putative transposase; Region: Y2_Tnp; pfam04986
198214003109	Transposase; Region: HTH_Tnp_1; cl17663
198214003110	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003111	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003112	Transposase; Region: HTH_Tnp_1; cl17663
198214003113	putative transposase OrfB; Reviewed; Region: PHA02517
198214003114	HTH-like domain; Region: HTH_21; pfam13276
198214003115	Integrase core domain; Region: rve; pfam00665
198214003116	Integrase core domain; Region: rve_3; pfam13683
198214003117	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214003118	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003119	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214003120	HTH-like domain; Region: HTH_21; pfam13276
198214003121	Integrase core domain; Region: rve; pfam00665
198214003122	Integrase core domain; Region: rve_3; pfam13683
198214003123	Transposase; Region: HTH_Tnp_1; cl17663
198214003124	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003125	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003126	Transposase; Region: HTH_Tnp_1; pfam01527
198214003127	putative transposase OrfB; Reviewed; Region: PHA02517
198214003128	HTH-like domain; Region: HTH_21; pfam13276
198214003129	Integrase core domain; Region: rve; pfam00665
198214003130	Integrase core domain; Region: rve_3; pfam13683
198214003131	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
198214003132	Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining...; Region: Ser_Recombinase; cd00338
198214003133	catalytic residues [active]
198214003134	catalytic nucleophile [active]
198214003135	Recombinase; Region: Recombinase; pfam07508
198214003136	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
198214003137	putative acyl-acceptor binding pocket; other site
198214003138	putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142
198214003139	Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins; Region: RHOD_YceA; cd01518
198214003140	active site residue [active]
198214003141	hypothetical protein; Provisional; Region: PRK03757
198214003142	Cytochrome B561 [Energy production and conversion]; Region: CybB; COG3038
198214003143	Protein of unknown function (DUF2770); Region: DUF2770; pfam10968
198214003144	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
198214003145	N-methyltryptophan oxidase; Provisional; Region: solA; PRK11259
198214003146	DNA damage-inducible protein I; Provisional; Region: PRK10597
198214003147	Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is...; Region: DHOase; cd01294
198214003148	active site
198214003149	substrate binding pocket [chemical binding]; other site
198214003150	dimer interface [polypeptide binding]; other site
198214003151	lipoprotein; Provisional; Region: PRK10598
198214003152	glutaredoxin 2; Provisional; Region: PRK10387
198214003153	GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal...; Region: GST_N_GRX2; cd03037
198214003154	C-terminal domain interface [polypeptide binding]; other site
198214003155	GSH binding site (G-site) [chemical binding]; other site
198214003156	catalytic residues [active]
198214003157	putative dimer interface [polypeptide binding]; other site
198214003158	C-terminal, alpha helical domain of Glutaredoxin 2; Region: GST_C_GRX2; cd03199
198214003159	N-terminal domain interface [polypeptide binding]; other site
198214003160	multidrug resistance protein MdtH; Provisional; Region: PRK11646
198214003161	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214003162	putative substrate translocation pore; other site
198214003163	ribosomal-protein-S5-alanine N-acetyltransferase; Provisional; Region: PRK10809
198214003164	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
198214003165	hypothetical protein; Provisional; Region: PRK11239
198214003166	Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728
198214003167	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
198214003168	flagella synthesis chaperone protein FlgN; Provisional; Region: PRK15459
198214003169	anti-sigma28 factor FlgM; Provisional; Region: PRK10810
198214003170	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
198214003171	Domains similar to fish antifreeze type III protein; Region: SAF; cl00555
198214003172	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK05680
198214003173	flagellar basal body rod protein FlgB; Provisional; Region: flgB; cl19173
198214003174	flagellar basal body rod modification protein; Reviewed; Region: flgD; PRK06655
198214003175	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
198214003176	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
198214003177	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
198214003178	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
198214003179	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
198214003180	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
198214003181	'Similar to Escherichia coli K12 flagellar biosynthesis, cell-proximal portion of basal-body rod gi: 1787317 (252 aa). BLAST with identity of 96% in 251 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214003182	flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693
198214003183	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
198214003184	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
198214003185	flagellar basal body L-ring protein; Reviewed; Region: flgH; PRK00249
198214003186	flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303
198214003187	flagellar rod assembly protein/muramidase FlgJ; Validated; Region: flgJ; PRK05684
198214003188	Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]; Region: COG3951
198214003189	Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FlgJ; COG1705
198214003190	'Similar to Escherichia coli K12 flagellar biosynthesis, hook-filament junction protein 1 gi: 1787323 (548 aa). BLAST with identity of 98% in 548 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214003191	Similar to Escherichia coli K12 flagellar biosynthesis; hook-filament junction protein gi: 1787324 (318 aa). BLAST with identity of 94% in 314 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003192	ribonuclease E; Reviewed; Region: rne; PRK10811
198214003193	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
198214003194	homodimer interface [polypeptide binding]; other site
198214003195	oligonucleotide binding site [chemical binding]; other site
198214003196	Ribonuclease E/G family; Region: RNase_E_G; pfam10150
198214003197	Polyribonucleotide phosphorylase C terminal; Region: PNPase_C; pfam12111
198214003198	Protein of unknown function (DUF2655); Region: DUF2655; pfam10848
198214003199	23S rRNA pseudouridylate synthase C; Provisional; Region: PRK11025
198214003200	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214003201	RNA binding surface [nucleotide binding]; other site
198214003202	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
198214003203	active site
198214003204	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
198214003205	active site
198214003206	dimer interface [polypeptide binding]; other site
198214003207	hypothetical protein; Provisional; Region: PRK11193
198214003208	50S ribosomal protein L32; Validated; Region: rpmF; PRK01110
198214003209	putative phosphate acyltransferase; Provisional; Region: PRK05331
198214003210	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
198214003211	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
198214003212	dimer interface [polypeptide binding]; other site
198214003213	active site
198214003214	CoA binding pocket [chemical binding]; other site
198214003215	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
198214003216	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
198214003217	beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; Region: BKR_SDR_c; cd05333
198214003218	NAD(P) binding site [chemical binding]; other site
198214003219	homotetramer interface [polypeptide binding]; other site
198214003220	homodimer interface [polypeptide binding]; other site
198214003221	active site
198214003222	acyl carrier protein; Provisional; Region: acpP; PRK00982
198214003223	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK07314
198214003224	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
198214003225	dimer interface [polypeptide binding]; other site
198214003226	active site
198214003227	ADCL_like: 4-Amino-4-deoxychorismate lyase:  is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate.  Based on the information available from the crystal structure, most...; Region: ADCL_like; cd01559
198214003228	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214003229	catalytic residue [active]
198214003230	proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010
198214003231	dimerization interface [polypeptide binding]; other site
198214003232	thymidylate kinase; Validated; Region: tmk; PRK00698
198214003233	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
198214003234	TMP-binding site; other site
198214003235	ATP-binding site [chemical binding]; other site
198214003236	DNA polymerase III subunit delta'; Validated; Region: PRK07993
198214003237	DNA polymerase III, delta subunit, C terminal; Region: DNApol3-delta_C; pfam09115
198214003238	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
198214003239	Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]; Region: COG1099
198214003240	active site
198214003241	PTS system glucose-specific transporter subunits IIBC; Provisional; Region: PRK11089
198214003242	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
198214003243	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214003244	active site turn [active]
198214003245	phosphorylation site [posttranslational modification]
198214003246	Similar to Escherichia coli K12 outer membrane receptor for ferric iron uptake gi: 1787344 (730 aa). BLAST with identity of 99% in 728 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003247	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
198214003248	nucleotide binding site/active site [active]
198214003249	HIT family signature motif; other site
198214003250	catalytic residue [active]
198214003251	Putative periplasmic lipoprotein; Region: DUF1425; cd09030
198214003252	putative dimer interface [polypeptide binding]; other site
198214003253	Phosphotransferase enzyme family; Region: APH; pfam01636
198214003254	active site
198214003255	substrate binding site [chemical binding]; other site
198214003256	ATP binding site [chemical binding]; other site
198214003257	thiamine kinase; Provisional; Region: thiK; PRK10271
198214003258	beta-hexosaminidase; Provisional; Region: PRK05337
198214003259	hypothetical protein; Provisional; Region: PRK04940
198214003260	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252
198214003261	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214003262	hypothetical protein; Provisional; Region: PRK11280
198214003263	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
198214003264	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214003265	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214003266	L,D-transpeptidase; Provisional; Region: PRK10260
198214003267	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214003268	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
198214003269	transcription-repair coupling factor; Provisional; Region: PRK10689
198214003270	Bifunctional transglycosylase second domain; Region: UB2H; pfam14814
198214003271	CarD-like/TRCF domain; Region: CarD_TRCF; smart01058
198214003272	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214003273	ATP binding site [chemical binding]; other site
198214003274	putative Mg++ binding site [ion binding]; other site
198214003275	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214003276	nucleotide binding region [chemical binding]; other site
198214003277	ATP-binding site [chemical binding]; other site
198214003278	This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli; Region: TRCF; smart00982
198214003279	Predicted membrane protein [Function unknown]; Region: COG4763
198214003280	outer membrane-specific lipoprotein transporter subunit LolC; Provisional; Region: PRK10814
198214003281	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
198214003282	FtsX-like permease family; Region: FtsX; pfam02687
198214003283	lipoprotein transporter ATP-binding subunit; Provisional; Region: lolD; PRK11629
198214003284	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
198214003285	Walker A/P-loop; other site
198214003286	ATP binding site [chemical binding]; other site
198214003287	Q-loop/lid; other site
198214003288	ABC transporter signature motif; other site
198214003289	Walker B; other site
198214003290	D-loop; other site
198214003291	H-loop/switch region; other site
198214003292	outer membrane-specific lipoprotein transporter subunit LolE; Provisional; Region: PRK11146
198214003293	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
198214003294	FtsX-like permease family; Region: FtsX; pfam02687
198214003295	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
198214003296	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214003297	nucleotide binding site [chemical binding]; other site
198214003298	SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which...; Region: SIRT5_Af1_CobB; cd01412
198214003299	NAD+ binding site [chemical binding]; other site
198214003300	substrate binding site [chemical binding]; other site
198214003301	Zn binding site [ion binding]; other site
198214003302	spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed; Region: potD; PRK09501
198214003303	spermidine/putrescine ABC transporter membrane protein; Reviewed; Region: potC; PRK09500
198214003304	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003305	dimer interface [polypeptide binding]; other site
198214003306	conserved gate region; other site
198214003307	putative PBP binding loops; other site
198214003308	ABC-ATPase subunit interface; other site
198214003309	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
198214003310	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003311	dimer interface [polypeptide binding]; other site
198214003312	conserved gate region; other site
198214003313	putative PBP binding loops; other site
198214003314	ABC-ATPase subunit interface; other site
198214003315	putrescine/spermidine ABC transporter ATPase protein; Reviewed; Region: potA; PRK09452
198214003316	ATP-binding cassette domain of the polyamine transporter; Region: ABC_PotA_N; cd03300
198214003317	Walker A/P-loop; other site
198214003318	ATP binding site [chemical binding]; other site
198214003319	Q-loop/lid; other site
198214003320	ABC transporter signature motif; other site
198214003321	Walker B; other site
198214003322	D-loop; other site
198214003323	H-loop/switch region; other site
198214003324	TOBE domain; Region: TOBE_2; pfam08402
198214003325	peptidase T-like protein; Region: PepT-like; TIGR01883
198214003326	M20 Peptidase T specifically cleaves tripeptides; Region: M20_peptT; cd03892
198214003327	metal binding site [ion binding]; metal-binding site
198214003328	dimer interface [polypeptide binding]; other site
198214003329	Uncharacterized conserved protein [Function unknown]; Region: COG2850
198214003330	Domain of unknown function (DUF4222); Region: DUF4222; pfam13973
198214003331	D5 N terminal like; Region: D5_N; smart00885
198214003332	phage/plasmid primase, P4 family, C-terminal domain; Region: primase_Cterm; TIGR01613
198214003333	Poxvirus D5 protein-like; Region: Pox_D5; pfam03288
198214003334	Similar to Escherichia coli O157:H7 EDL933  capsid protein of prophage CP-933C  ref: NP_287332.1 (385 aa). BLAST with identity of 98% in 402 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003335	Phage head maturation protease [General function prediction only]; Region: COG3740
198214003336	Phage-related protein [Function unknown]; Region: COG4695
198214003337	Bacteriophage head-tail adaptor [General function prediction only]; Region: COG5614
198214003338	Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins; Region: gp6; cd08054
198214003339	oligomerization interface [polypeptide binding]; other site
198214003340	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
198214003341	active site
198214003342	Phage terminase, small subunit; Region: Terminase_4; cl01525
198214003343	Phage terminase-like protein, large subunit [General function prediction only]; Region: COG4626
198214003344	Phage Terminase; Region: Terminase_1; cl19862
198214003345	sensor protein PhoQ; Provisional; Region: PRK10815
198214003346	PhoQ Sensor; Region: PhoQ_Sensor; pfam08918
198214003347	HAMP domain; Region: HAMP; pfam00672
198214003348	His Kinase A (phospho-acceptor) domain; Region: HisKA; pfam00512
198214003349	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214003350	ATP binding site [chemical binding]; other site
198214003351	Mg2+ binding site [ion binding]; other site
198214003352	G-X-G motif; other site
198214003353	DNA-binding transcriptional regulator PhoP; Provisional; Region: PRK10816
198214003354	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214003355	active site
198214003356	phosphorylation site [posttranslational modification]
198214003357	intermolecular recognition site; other site
198214003358	dimerization interface [polypeptide binding]; other site
198214003359	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214003360	DNA binding site [nucleotide binding]
198214003361	adenylosuccinate lyase; Provisional; Region: PRK09285
198214003362	PurB_like adenylosuccinases (adenylsuccinate lyase, ASL); Region: PurB; cd01598
198214003363	tetramer interface [polypeptide binding]; other site
198214003364	active site
198214003365	putative lysogenization regulator; Reviewed; Region: PRK00218
198214003366	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Region: trmU; TIGR00420
198214003367	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
198214003368	Ligand Binding Site [chemical binding]; other site
198214003369	Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes...; Region: Nudix_Hydrolase_2; cd03675
198214003370	nudix motif; other site
198214003371	23S rRNA pseudouridine synthase E; Provisional; Region: PRK11394
198214003372	Pseudouridine synthase, Escherichia coli RluE; Region: PseudoU_synth_RluE; cd02566
198214003373	probable active site [active]
198214003374	isocitrate dehydrogenase; Reviewed; Region: PRK07006
198214003375	phage resistance protein; Provisional; Region: PRK10551
198214003376	CSS motif domain associated with EAL; Region: CSS-motif; pfam12792
198214003377	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214003378	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
198214003379	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
198214003380	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214003381	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214003382	Glycine-zipper containing OmpA-like membrane domain; Region: Gly-zipper_OmpA; pfam13436
198214003383	Autotransporter beta-domain; Region: Autotransporter; smart00869
198214003384	Similar to Escherichia coli O157:H7  ATP-binding component of a transport system  ref: NP_311542.1 (1571 aa). BLAST with identity of 96% in 136 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214003385	cell division topological specificity factor MinE; Reviewed; Region: minE; PRK00296
198214003386	cell division inhibitor MinD; Provisional; Region: PRK10818
198214003387	Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal...; Region: MinD; cd02036
198214003388	P-loop; other site
198214003389	ADP binding residues [chemical binding]; other site
198214003390	Switch I; other site
198214003391	Switch II; other site
198214003392	septum formation inhibitor; Reviewed; Region: minC; PRK03511
198214003393	Septum formation inhibitor MinC, N-terminal domain; Region: MinC_N; pfam05209
198214003394	Septum formation inhibitor MinC, C-terminal domain; Region: MinC_C; pfam03775
198214003395	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214003396	HTH-like domain; Region: HTH_21; pfam13276
198214003397	Integrase core domain; Region: rve; pfam00665
198214003398	Integrase core domain; Region: rve_3; pfam13683
198214003399	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214003400	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003401	Transposase; Region: HTH_Tnp_1; cl17663
198214003402	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003403	putative transposase OrfB; Reviewed; Region: PHA02517
198214003404	HTH-like domain; Region: HTH_21; pfam13276
198214003405	Integrase core domain; Region: rve; pfam00665
198214003406	Integrase core domain; Region: rve_2; pfam13333
198214003407	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3100
198214003408	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
198214003409	hypothetical protein; Provisional; Region: PRK10691
198214003410	hypothetical protein; Provisional; Region: PRK05170
198214003411	Similar to Escherichia coli K12 hemolysin E gi: 1787430 (306 aa). BLAST with identity of 98% in 302 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003412	SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]; Region: LexA; COG1974
198214003413	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
198214003414	Catalytic site [active]
198214003415	DNA polymerase V subunit UmuC; Reviewed; Region: umuC; PRK03609
198214003416	umuC subunit of DNA Polymerase V; Region: PolY_Pol_V_umuC; cd01700
198214003417	active site
198214003418	DNA binding site [nucleotide binding]
198214003419	Domain of unknown function (DUF4113); Region: DUF4113; pfam13438
198214003420	disulfide bond formation protein B; Provisional; Region: PRK01749
198214003421	sodium/proton antiporter; Reviewed; Region: nhaB; PRK09547
198214003422	fatty acid metabolism regulator; Provisional; Region: PRK04984
198214003423	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214003424	DNA-binding site [nucleotide binding]; DNA binding site
198214003425	FadR C-terminal domain; Region: FadR_C; pfam07840
198214003426	SpoVR family protein; Provisional; Region: PRK11767
198214003427	D-amino acid dehydrogenase small subunit; Validated; Region: PRK00711
198214003428	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214003429	alanine racemase; Reviewed; Region: dadX; PRK03646
198214003430	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827
198214003431	active site
198214003432	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
198214003433	substrate binding site [chemical binding]; other site
198214003434	catalytic residues [active]
198214003435	dimer interface [polypeptide binding]; other site
198214003436	NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]; Region: COG3263
198214003437	NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Region: NhaP; COG0025
198214003438	TrkA-C domain; Region: TrkA_C; pfam02080
198214003439	Transporter associated domain; Region: CorC_HlyC; smart01091
198214003440	LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein; Region: Peptidase_S66; cd07025
198214003441	dimer interface [polypeptide binding]; other site
198214003442	catalytic triad [active]
198214003443	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214003444	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214003445	catalytic residue [active]
198214003446	c-di-GMP-binding protein [Signal transduction mechanisms]; Region: COG5581
198214003447	Flagellar regulator YcgR; Region: YcgR; pfam07317
198214003448	PilZ domain; Region: PilZ; pfam07238
198214003449	Transglycosylase associated protein; Region: Transgly_assoc; cl00978
198214003450	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214003451	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214003452	catalytic residue [active]
198214003453	c-di-GMP-binding protein [Signal transduction mechanisms]; Region: COG5581
198214003454	Flagellar regulator YcgR; Region: YcgR; pfam07317
198214003455	PilZ domain; Region: PilZ; pfam07238
198214003456	Transglycosylase associated protein; Region: Transgly_assoc; cl00978
198214003457	'Similar to Escherichia coli O157:H7 EDL933  outer membrane receptor, probably tonB dependent  ref: NP_287437.1 (656 aa). BLAST with identity of 98% in 659 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214003458	molybdenum transport protein ModD; Provisional; Region: PRK06096
198214003459	ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and...; Region: modD_like; cd01573
198214003460	dimerization interface [polypeptide binding]; other site
198214003461	active site
198214003462	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214003463	S-adenosylmethionine binding site [chemical binding]; other site
198214003464	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
198214003465	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
198214003466	Walker A/P-loop; other site
198214003467	ATP binding site [chemical binding]; other site
198214003468	Q-loop/lid; other site
198214003469	ABC transporter signature motif; other site
198214003470	Walker B; other site
198214003471	D-loop; other site
198214003472	H-loop/switch region; other site
198214003473	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214003474	ABC-ATPase subunit  interface; other site
198214003475	dimer interface [polypeptide binding]; other site
198214003476	putative PBP binding regions; other site
198214003477	ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: FepB; COG0614
198214003478	Metal binding protein HemV-2.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding...; Region: HemV-2; cd01147
198214003479	putative metal binding site [ion binding]; other site
198214003480	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214003481	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214003482	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214003483	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214003484	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787446 (147 aa). BLAST with identity of 99% in 147 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214003485	trehalase; Provisional; Region: treA; PRK13271
198214003486	Neutral trehalase [Carbohydrate transport and metabolism]; Region: TreA; COG1626
198214003487	dihydroxyacetone kinase subunit M; Provisional; Region: PRK11377
198214003488	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3412
198214003489	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
198214003490	dimerization domain swap beta strand [polypeptide binding]; other site
198214003491	regulatory protein interface [polypeptide binding]; other site
198214003492	active site
198214003493	regulatory phosphorylation site [posttranslational modification]; other site
198214003494	PEP-utilizing enzyme, N-terminal; Region: PEP-utilizers_N; pfam05524
198214003495	PEP-utilizing enzyme, mobile domain; Region: PEP-utilizers; pfam00391
198214003496	dihydroxyacetone kinase subunit DhaL; Provisional; Region: PRK10005
198214003497	dihydroxyacetone kinase subunit DhaK; Provisional; Region: PRK11468
198214003498	DNA-binding transcriptional regulator DhaR; Provisional; Region: PRK11388
198214003499	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
198214003500	putative active site [active]
198214003501	heme pocket [chemical binding]; other site
198214003502	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214003503	Walker A motif; other site
198214003504	ATP binding site [chemical binding]; other site
198214003505	Walker B motif; other site
198214003506	arginine finger; other site
198214003507	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
198214003508	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
198214003509	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214003510	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214003511	GTP-binding protein YchF; Reviewed; Region: PRK09601
198214003512	YchF GTPase; Region: YchF; cd01900
198214003513	G1 box; other site
198214003514	GTP/Mg2+ binding site [chemical binding]; other site
198214003515	Switch I region; other site
198214003516	G2 box; other site
198214003517	Switch II region; other site
198214003518	G3 box; other site
198214003519	G4 box; other site
198214003520	G5 box; other site
198214003521	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
198214003522	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
198214003523	putative active site [active]
198214003524	catalytic residue [active]
198214003525	hypothetical protein; Provisional; Region: PRK10692
198214003526	putative transporter; Provisional; Region: PRK11660
198214003527	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
198214003528	Sulfate transporter family; Region: Sulfate_transp; pfam00916
198214003529	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
198214003530	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
198214003531	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
198214003532	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214003533	active site
198214003534	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: ipk; PRK00343
198214003535	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
198214003536	GHMP kinases C terminal; Region: GHMP_kinases_C; pfam08544
198214003537	outer membrane lipoprotein LolB; Region: lolB; TIGR00548
198214003538	glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045
198214003539	NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213
198214003540	tRNA; other site
198214003541	putative tRNA binding site [nucleotide binding]; other site
198214003542	putative NADP binding site [chemical binding]; other site
198214003543	Glutamyl-tRNAGlu reductase, dimerization domain; Region: GlutR_dimer; pfam00745
198214003544	peptide chain release factor 1; Validated; Region: prfA; PRK00591
198214003545	This domain is found in peptide chain release factors; Region: PCRF; smart00937
198214003546	RF-1 domain; Region: RF-1; pfam00472
198214003547	HemK family putative methylases; Region: hemK_fam; TIGR00536
198214003548	Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]; Region: GidB; cl17726
198214003549	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214003550	S-adenosylmethionine binding site [chemical binding]; other site
198214003551	hypothetical protein; Provisional; Region: PRK10278
198214003552	hypothetical protein; Provisional; Region: PRK10941
198214003553	Transglutaminase-like superfamily; Region: Transglut_core2; pfam13369
198214003554	3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]; Region: KdsA; COG2877
198214003555	Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940
198214003556	calcium/sodium:proton antiporter; Provisional; Region: PRK10599
198214003557	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
198214003558	cation transport regulator; Reviewed; Region: chaB; PRK09582
198214003559	Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]; Region: ChaC; COG3703
198214003560	GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661
198214003561	putative active site pocket [active]
198214003562	dimerization interface [polypeptide binding]; other site
198214003563	putative catalytic residue [active]
198214003564	Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]; Region: DsrE; COG1553
198214003565	putative invasin; Provisional; Region: PRK10177
198214003566	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
198214003567	transcriptional regulator NarL; Provisional; Region: PRK10651
198214003568	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214003569	active site
198214003570	phosphorylation site [posttranslational modification]
198214003571	intermolecular recognition site; other site
198214003572	dimerization interface [polypeptide binding]; other site
198214003573	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214003574	DNA binding residues [nucleotide binding]
198214003575	dimerization interface [polypeptide binding]; other site
198214003576	nitrate/nitrite sensor protein NarX; Provisional; Region: PRK10600
198214003577	Type IV pili methyl-accepting chemotaxis transducer N-term; Region: PilJ; pfam13675
198214003578	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214003579	dimerization interface [polypeptide binding]; other site
198214003580	Histidine kinase; Region: HisKA_3; pfam07730
198214003581	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214003582	ATP binding site [chemical binding]; other site
198214003583	Mg2+ binding site [ion binding]; other site
198214003584	G-X-G motif; other site
198214003585	lysophospholipid transporter LplT; Provisional; Region: PRK11195; cl19150
198214003586	Nitrate/nitrite transporter [Inorganic ion transport and metabolism]; Region: NarK; COG2223
198214003587	respiratory nitrate reductase, alpha subunit; Region: narG; TIGR01580
198214003588	Respiratory nitrate reductase alpha N-terminal; Region: Nitr_red_alph_N; pfam14710
198214003589	Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to...; Region: MopB_Nitrate-R-NarG-like; cd02750
198214003590	[4Fe-4S] binding site [ion binding]; other site
198214003591	molybdopterin cofactor binding site [chemical binding]; other site
198214003592	Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to...; Region: MopB_CT_Nitrate-R-NarG-like; cd02776
198214003593	molybdopterin cofactor binding site; other site
198214003594	Nitrate reductase beta subunit [Energy production and conversion]; Region: NarY; COG1140
198214003595	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214003596	Respiratory nitrate reductase beta C-terminal; Region: Nitr_red_bet_C; pfam14711
198214003597	Nitrate reductase delta subunit; Region: Nitrate_red_del; cl00958
198214003598	respiratory nitrate reductase, gamma subunit; Region: narI; TIGR00351
198214003599	potential protein location (hypothetical protein SF1231 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-Y)
198214003600	formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027
198214003601	N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875
198214003602	Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648
198214003603	putative active site [active]
198214003604	putative substrate binding site [chemical binding]; other site
198214003605	putative cosubstrate binding site; other site
198214003606	catalytic site [active]
198214003607	hypothetical protein; Provisional; Region: PRK01617
198214003608	SEC-C motif; Region: SEC-C; cl19389
198214003609	SEC-C motif; Region: SEC-C; cl19389
198214003610	Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: RssA; COG1752
198214003611	Bacterial patatin-like phospholipase domain containing protein 6; Region: Pat_NTE_like_bacteria; cd07228
198214003612	active site
198214003613	nucleophile elbow; other site
198214003614	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214003615	active site
198214003616	response regulator of RpoS; Provisional; Region: PRK10693
198214003617	phosphorylation site [posttranslational modification]
198214003618	intermolecular recognition site; other site
198214003619	dimerization interface [polypeptide binding]; other site
198214003620	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
198214003621	dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]; Region: RfbA; COG1209
198214003622	active site
198214003623	tetramer interface; other site
198214003624	global DNA-binding transcriptional dual regulator H-NS; Provisional; Region: PRK10947
198214003625	DNA-binding protein H-NS [General function prediction only]; Region: Hns; COG2916
198214003626	thymidine kinase; Provisional; Region: PRK04296
198214003627	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214003628	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214003629	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214003630	bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional; Region: PRK13805
198214003631	Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins; Region: ALDH_F20_ACDH_EutE-like; cd07081
198214003632	putative catalytic cysteine [active]
198214003633	C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD); Region: AAD_C; cd08178
198214003634	putative active site [active]
198214003635	metal binding site [ion binding]; metal-binding site
198214003636	hypothetical protein; Provisional; Region: PRK11111
198214003637	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214003638	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214003639	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214003640	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214003641	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
198214003642	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
198214003643	peptide binding site [polypeptide binding]; other site
198214003644	oligopeptide transporter permease; Reviewed; Region: oppB; PRK09471
198214003645	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003646	dimer interface [polypeptide binding]; other site
198214003647	conserved gate region; other site
198214003648	putative PBP binding loops; other site
198214003649	ABC-ATPase subunit interface; other site
198214003650	oligopeptide ABC transporter permease OppC; Provisional; Region: PRK15406
198214003651	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
198214003652	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003653	dimer interface [polypeptide binding]; other site
198214003654	conserved gate region; other site
198214003655	putative PBP binding loops; other site
198214003656	ABC-ATPase subunit interface; other site
198214003657	oligopeptide transporter ATP-binding component; Provisional; Region: oppD; PRK09473
198214003658	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214003659	Walker A/P-loop; other site
198214003660	ATP binding site [chemical binding]; other site
198214003661	Q-loop/lid; other site
198214003662	ABC transporter signature motif; other site
198214003663	Walker B; other site
198214003664	D-loop; other site
198214003665	H-loop/switch region; other site
198214003666	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214003667	oligopeptide ABC transporter ATP-binding protein OppF; Provisional; Region: PRK15079
198214003668	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214003669	Walker A/P-loop; other site
198214003670	ATP binding site [chemical binding]; other site
198214003671	Q-loop/lid; other site
198214003672	ABC transporter signature motif; other site
198214003673	Walker B; other site
198214003674	D-loop; other site
198214003675	H-loop/switch region; other site
198214003676	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214003677	dsDNA-mimic protein; Reviewed; Region: PRK05094
198214003678	cardiolipin synthetase; Reviewed; Region: cls; PRK01642
198214003679	Phospholipase_D-nuclease N-terminal; Region: PLDc_N; pfam13396
198214003680	Catalytic domain, repeat 1, of Escherichia coli cardiolipin synthase and similar proteins; Region: PLDc_EcCLS_like_1; cd09152
198214003681	putative active site [active]
198214003682	catalytic site [active]
198214003683	Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase and similar proteins; Region: PLDc_EcCLS_like_2; cd09158
198214003684	putative active site [active]
198214003685	catalytic site [active]
198214003686	voltage-gated potassium channel; Provisional; Region: PRK10537
198214003687	Ion channel; Region: Ion_trans_2; pfam07885
198214003688	TrkA-N domain; Region: TrkA_N; pfam02254
198214003689	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003690	Transposase; Region: HTH_Tnp_1; pfam01527
198214003691	HTH-like domain; Region: HTH_21; pfam13276
198214003692	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
198214003693	Integrase core domain; Region: rve; pfam00665
198214003694	Integrase core domain; Region: rve_3; pfam13683
198214003695	YciI-like protein; Reviewed; Region: PRK11370
198214003696	transport protein TonB; Provisional; Region: PRK10819
198214003697	Gram-negative bacterial TonB protein C-terminal; Region: TonB_C; pfam03544
198214003698	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
198214003699	intracellular septation protein A; Reviewed; Region: PRK00259
198214003700	hypothetical protein; Provisional; Region: PRK02868
198214003701	outer membrane protein W; Provisional; Region: PRK10959
198214003702	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3685
198214003703	YciF bacterial stress response protein, ferritin-like iron-binding domain; Region: YciF; cd07909
198214003704	dimerization interface [polypeptide binding]; other site
198214003705	metal binding site [ion binding]; metal-binding site
198214003706	General stress protein [General function prediction only]; Region: GsiB; COG3729
198214003707	Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both...; Region: Tryptophan_synthase_alpha; cd04724
198214003708	substrate binding site [chemical binding]; other site
198214003709	active site
198214003710	catalytic residues [active]
198214003711	heterodimer interface [polypeptide binding]; other site
198214003712	Tryptophan synthase-beta:  Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446
198214003713	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214003714	catalytic residue [active]
198214003715	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional; Region: PRK09427
198214003716	Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331
198214003717	active site
198214003718	ribulose/triose binding site [chemical binding]; other site
198214003719	phosphate binding site [ion binding]; other site
198214003720	substrate (anthranilate) binding pocket [chemical binding]; other site
198214003721	product (indole) binding pocket [chemical binding]; other site
198214003722	Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are...; Region: PRAI; cd00405
198214003723	active site
198214003724	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional; Region: PRK09522
198214003725	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
198214003726	glutamine binding [chemical binding]; other site
198214003727	catalytic triad [active]
198214003728	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
198214003729	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
198214003730	anthranilate synthase component I; Provisional; Region: PRK13564
198214003731	Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715
198214003732	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
198214003733	Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]; Region: COG0613
198214003734	Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound; Region: PHP_HisPPase_AMP; cd07438
198214003735	active site
198214003736	hypothetical protein; Provisional; Region: PRK11630
198214003737	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787524 (292 aa). BLAST with identity of 98% in 279 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003738	ATP:corrinoid adenosyltransferase [Coenzyme metabolism]; Region: BtuR; COG2109
198214003739	Cob(I)alamin adenosyltransferase N terminal; Region: Co_AT_N; pfam12557
198214003740	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer; Region: CobA_CobO_BtuR; cd00561
198214003741	homodimer interface [polypeptide binding]; other site
198214003742	Walker A motif; other site
198214003743	ATP binding site [chemical binding]; other site
198214003744	hydroxycobalamin binding site [chemical binding]; other site
198214003745	Walker B motif; other site
198214003746	Escherichia coli K-12 YCIK-like, classical (c) SDRs; Region: Ycik_SDR_c; cd05340
198214003747	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: FabG; COG1028
198214003748	NADP binding site [chemical binding]; other site
198214003749	homodimer interface [polypeptide binding]; other site
198214003750	active site
198214003751	Peptidase family S49 N-terminal; Region: Peptidase_S49_N; pfam08496
198214003752	putative inner membrane peptidase; Provisional; Region: PRK11778
198214003753	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
198214003754	tandem repeat interface [polypeptide binding]; other site
198214003755	oligomer interface [polypeptide binding]; other site
198214003756	active site residues [active]
198214003757	hypothetical protein; Provisional; Region: PRK11037
198214003758	DNA topoisomerase I subunit omega; Validated; Region: PRK07561
198214003759	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
198214003760	active site
198214003761	interdomain interaction site; other site
198214003762	putative metal-binding site [ion binding]; other site
198214003763	nucleotide binding site [chemical binding]; other site
198214003764	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
198214003765	domain I; other site
198214003766	DNA binding groove [nucleotide binding]
198214003767	phosphate binding site [ion binding]; other site
198214003768	domain II; other site
198214003769	domain III; other site
198214003770	nucleotide binding site [chemical binding]; other site
198214003771	catalytic site [active]
198214003772	domain IV; other site
198214003773	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
198214003774	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
198214003775	Topoisomerase I zinc-ribbon-like; Region: Topo_Zn_Ribbon; pfam08272
198214003776	Topoisomerase I zinc-ribbon-like; Region: Topo_Zn_Ribbon; pfam08272
198214003777	transcriptional regulator CysB; Reviewed; Region: cysB; PRK12681
198214003778	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214003779	The C-terminal substrate domain of LysR-type transcriptional regulator CysB contains type 2 periplasmic binding fold; Region: PBP2_CysB; cd08443
198214003780	substrate binding site [chemical binding]; other site
198214003781	putative dimerization interface [polypeptide binding]; other site
198214003782	aconitate hydratase; Validated; Region: PRK09277
198214003783	Aconitase A catalytic domain; Region: AcnA_IRP; cd01586
198214003784	substrate binding site [chemical binding]; other site
198214003785	ligand binding site [chemical binding]; other site
198214003786	Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group...; Region: AcnA_IRP_Swivel; cd01580
198214003787	substrate binding site [chemical binding]; other site
198214003788	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
198214003789	dimerization interface [polypeptide binding]; other site
198214003790	active site
198214003791	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
198214003792	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cd01610
198214003793	active site
198214003794	Predicted membrane protein [Function unknown]; Region: COG3771
198214003795	Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]; Region: COG2956
198214003796	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
198214003797	TPR motif; other site
198214003798	binding surface
198214003799	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
198214003800	binding surface
198214003801	TPR motif; other site
198214003802	Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase...; Region: OMP_decarboxylase_like; cd04725
198214003803	active site
198214003804	dimer interface [polypeptide binding]; other site
198214003805	Homologs of eIF1/SUI1 including Escherichia coli YciH; Region: YciH_like; cd11567
198214003806	putative rRNA binding site [nucleotide binding]; other site
198214003807	lipoprotein; Provisional; Region: PRK10540
198214003808	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
198214003809	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
198214003810	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214003811	hypothetical protein; Provisional; Region: PRK13658
198214003812	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787541 (662 aa). BLAST with identity of 98% in 658 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214003813	exoribonuclease II; Provisional; Region: PRK05054
198214003814	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
198214003815	RNB domain; Region: RNB; pfam00773
198214003816	S1 RNA binding domain; Region: S1; pfam00575
198214003817	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4950
198214003818	Uncharacterized conserved protein [Function unknown]; Region: COG2128
198214003819	Carboxymuconolactone decarboxylase family; Region: CMD; cl00460
198214003820	Enoyl-[acyl-carrier-protein]; Region: FabI; COG0623
198214003821	Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372
198214003822	NAD binding site [chemical binding]; other site
198214003823	homotetramer interface [polypeptide binding]; other site
198214003824	homodimer interface [polypeptide binding]; other site
198214003825	substrate binding site [chemical binding]; other site
198214003826	active site
198214003827	Domain of unknown function, appears to be related to a diverse group of endonucleases; Region: Endonuclease_DUF559; cd01038
198214003828	putative active site [active]
198214003829	antimicrobial peptide ABC system ATP-binding protein SapF; Provisional; Region: PRK15112
198214003830	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214003831	Walker A/P-loop; other site
198214003832	ATP binding site [chemical binding]; other site
198214003833	Q-loop/lid; other site
198214003834	ABC transporter signature motif; other site
198214003835	Walker B; other site
198214003836	D-loop; other site
198214003837	H-loop/switch region; other site
198214003838	antimicrobial peptide ABC transporter ATP-binding protein; Provisional; Region: PRK15093
198214003839	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214003840	Walker A/P-loop; other site
198214003841	ATP binding site [chemical binding]; other site
198214003842	Q-loop/lid; other site
198214003843	ABC transporter signature motif; other site
198214003844	Walker B; other site
198214003845	D-loop; other site
198214003846	H-loop/switch region; other site
198214003847	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214003848	antimicrobial peptide ABC transporter permease SapC; Provisional; Region: PRK15111
198214003849	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
198214003850	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003851	dimer interface [polypeptide binding]; other site
198214003852	conserved gate region; other site
198214003853	putative PBP binding loops; other site
198214003854	ABC-ATPase subunit interface; other site
198214003855	ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; Region: SapB; COG4168
198214003856	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003857	dimer interface [polypeptide binding]; other site
198214003858	conserved gate region; other site
198214003859	putative PBP binding loops; other site
198214003860	ABC-ATPase subunit interface; other site
198214003861	antimicrobial peptide ABC transporter periplasmic binding protein SapA; Provisional; Region: PRK15109
198214003862	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
198214003863	peptide binding site [polypeptide binding]; other site
198214003864	Protein of unknown function (DUF2543); Region: DUF2543; pfam10820
198214003865	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214003866	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
198214003867	Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174
198214003868	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
198214003869	gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional; Region: puuD; PRK11366
198214003870	Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; Region: GATase1_2; cd01745
198214003871	catalytic triad [active]
198214003872	DNA-binding transcriptional repressor PuuR; Provisional; Region: PRK09943
198214003873	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214003874	non-specific DNA binding site [nucleotide binding]; other site
198214003875	salt bridge; other site
198214003876	sequence-specific DNA binding site [nucleotide binding]; other site
198214003877	Cupin domain; Region: Cupin_2; pfam07883
198214003878	Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like; Region: ALDH_GABALDH-PuuC; cd07112
198214003879	NAD(P) binding site [chemical binding]; other site
198214003880	catalytic residues [active]
198214003881	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
198214003882	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
198214003883	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
198214003884	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Region: BioA; COG0161
198214003885	inhibitor-cofactor binding pocket; inhibition site
198214003886	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214003887	catalytic residue [active]
198214003888	phage shock protein operon transcriptional activator; Provisional; Region: pspF; PRK11608
198214003889	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214003890	Walker A motif; other site
198214003891	ATP binding site [chemical binding]; other site
198214003892	Walker B motif; other site
198214003893	arginine finger; other site
198214003894	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
198214003895	phage shock protein PspA; Provisional; Region: PRK10698
198214003896	Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]; Region: PspA; COG1842
198214003897	phage shock protein B; Provisional; Region: pspB; PRK09458
198214003898	DNA-binding transcriptional activator PspC; Provisional; Region: PRK10697
198214003899	phage shock protein C; Region: phageshock_pspC; TIGR02978
198214003900	peripheral inner membrane phage-shock protein; Provisional; Region: PRK10497
198214003901	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
198214003902	active site residue [active]
198214003903	Similar to Escherichia coli K12  polysaccharide hydrolase gi: 1787568 (569 aa). BLAST with identity of 93% in 823 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214003904	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214003905	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214003906	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214003907	Similar to Escherichia coli K12  transport periplasmic protein gi: 1787569 (431 aa). BLAST with identity of 95% in 428 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003908	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
198214003909	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003910	dimer interface [polypeptide binding]; other site
198214003911	conserved gate region; other site
198214003912	putative PBP binding loops; other site
198214003913	ABC-ATPase subunit interface; other site
198214003914	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
198214003915	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214003916	dimer interface [polypeptide binding]; other site
198214003917	conserved gate region; other site
198214003918	putative PBP binding loops; other site
198214003919	ABC-ATPase subunit interface; other site
198214003920	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
198214003921	2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members; Region: 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_; cd08255
198214003922	putative NAD(P) binding site [chemical binding]; other site
198214003923	Similar to Escherichia coli K12  transient receptor potential locus gi: 1787573 (266 aa). BLAST with identity of 96% in 160 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003924	Similar to Escherichia coli K12  dehydrogenase gi: 1787574 (352 aa). BLAST with identity of 98% in 352 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214003925	Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]; Region: ATH1; COG1554
198214003926	Glycosyl hydrolase family 65, N-terminal domain; Region: Glyco_hydro_65N; pfam03636
198214003927	Glycosyl hydrolase family 65 central catalytic domain; Region: Glyco_hydro_65m; pfam03632
198214003928	Glycosyl hydrolase family 65, C-terminal domain; Region: Glyco_hydro_65C; pfam03633
198214003929	beta-phosphoglucomutase; Region: bPGM; TIGR01990
198214003930	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214003931	motif II; other site
198214003932	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: CysA; COG1118
198214003933	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
198214003934	Walker A/P-loop; other site
198214003935	ATP binding site [chemical binding]; other site
198214003936	Q-loop/lid; other site
198214003937	ABC transporter signature motif; other site
198214003938	Walker B; other site
198214003939	D-loop; other site
198214003940	H-loop/switch region; other site
198214003941	TOBE domain; Region: TOBE_2; pfam08402
198214003942	Similar to Escherichia coli K12 outer membrane protein gi: 1787579 (302 aa). BLAST with identity of 98% in 301 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214003943	Transcriptional regulators [Transcription]; Region: PurR; COG1609
198214003944	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214003945	DNA binding site [nucleotide binding]
198214003946	domain linker motif; other site
198214003947	Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors; Region: PBP1_ycjW_transcription_regulator_like; cd06294
198214003948	putative dimerization interface [polypeptide binding]; other site
198214003949	putative ligand binding site [chemical binding]; other site
198214003950	Predicted ATPase [General function prediction only]; Region: COG3106
198214003951	hypothetical protein; Provisional; Region: PRK05415
198214003952	Predicted membrane protein [Function unknown]; Region: COG3768
198214003953	DNA-binding transcriptional regulator TyrR; Provisional; Region: PRK10820
198214003954	N-terminal ACT domain of the TyrR protein; Region: ACT_TyrR; cd04877
198214003955	putative aromatic amino acid binding site; other site
198214003956	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
198214003957	putative active site [active]
198214003958	heme pocket [chemical binding]; other site
198214003959	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214003960	Walker A motif; other site
198214003961	ATP binding site [chemical binding]; other site
198214003962	Walker B motif; other site
198214003963	arginine finger; other site
198214003964	Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a...; Region: PRX_Atyp2cys; cd03014
198214003965	dimer interface [polypeptide binding]; other site
198214003966	catalytic triad [active]
198214003967	peroxidatic and resolving cysteines [active]
198214003968	L-Ala-D/L-Glu epimerase; Provisional; Region: PRK15129
198214003969	L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of...; Region: L-Ala-DL-Glu_epimerase; cd03319
198214003970	active site
198214003971	Predicted carboxypeptidase [Amino acid transport and metabolism]; Region: COG2866
198214003972	Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A and related proteins; Region: M14_MpaA_like; cd06904
198214003973	putative active site [active]
198214003974	Zn binding site [ion binding]; other site
198214003975	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
198214003976	atypical (a) SDRs, subgroup 6; Region: SDR_a6; cd05267
198214003977	putative NAD(P) binding site [chemical binding]; other site
198214003978	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
198214003979	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214003980	Y-family of DNA polymerases; Region: PolY; cl12025
198214003981	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214003982	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214003983	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
198214003984	Prolyl oligopeptidase family; Region: Peptidase_S9; cl19144
198214003985	Erv1 / Alr family; Region: Evr1_Alr; cl02107
198214003986	Similar to Escherichia coli K12  transcriptional regulator LYSR-type gi: 1787589 (300 aa). BLAST with identity of 97% in 145 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214003987	putative transposase OrfB; Reviewed; Region: PHA02517
198214003988	HTH-like domain; Region: HTH_21; pfam13276
198214003989	Integrase core domain; Region: rve; pfam00665
198214003990	Integrase core domain; Region: rve_3; pfam13683
198214003991	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214003992	Transposase; Region: HTH_Tnp_1; pfam01527
198214003993	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787622 (286 aa). BLAST with identity of 96% in 841 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214003994	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214003995	HTH-like domain; Region: HTH_21; pfam13276
198214003996	Integrase core domain; Region: rve; pfam00665
198214003997	Integrase core domain; Region: rve_3; pfam13683
198214003998	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214003999	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004000	putative replication protein; Provisional; Region: PRK12377
198214004001	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214004002	Walker A motif; other site
198214004003	ATP binding site [chemical binding]; other site
198214004004	Walker B motif; other site
198214004005	Bacterial protein of unknown function (DUF977); Region: DUF977; pfam06163
198214004006	Protein of unknown function (DUF4014); Region: DUF4014; pfam13198
198214004007	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
198214004008	active site
198214004009	Protein of unknown function (DUF551); Region: DUF551; pfam04448
198214004010	Hok/gef family; Region: HOK_GEF; pfam01848
198214004011	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004012	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004013	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004014	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004015	Protein of unknown function (DUF1367); Region: DUF1367; pfam07105
198214004016	Protein of unknown function (DUF1364); Region: DUF1364; pfam07102
198214004017	Protein of unknown function (DUF1133); Region: DUF1133; pfam06576
198214004018	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004019	Transposase; Region: HTH_Tnp_1; pfam01527
198214004020	putative transposase OrfB; Reviewed; Region: PHA02517
198214004021	HTH-like domain; Region: HTH_21; pfam13276
198214004022	Integrase core domain; Region: rve; pfam00665
198214004023	Integrase core domain; Region: rve_3; pfam13683
198214004024	ipaH island II
198214004025	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
198214004026	Prophage tail fibre N-terminal; Region: phage_tail_N; pfam08400
198214004027	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214004028	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214004029	ABC-ATPase subunit  interface; other site
198214004030	dimer interface [polypeptide binding]; other site
198214004031	putative PBP binding regions; other site
198214004032	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214004033	ABC-ATPase subunit  interface; other site
198214004034	dimer interface [polypeptide binding]; other site
198214004035	putative PBP binding regions; other site
198214004036	manganese/iron transporter ATP-binding protein; Provisional; Region: PRK15056
198214004037	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
198214004038	ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]; Region: LraI; COG0803
198214004039	Metal binding protein PsaA.  These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that...; Region: PsaA; cd01137
198214004040	metal binding site [ion binding]; metal-binding site
198214004041	Similar to Escherichia coli K12  transposase gi: 1787607 (412 aa). BLAST with identity of 96% in 525 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214004042	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004043	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004044	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004045	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004046	Integrase core domain; Region: rve; pfam00665
198214004047	Integrase core domain; Region: rve_3; pfam13683
198214004048	Transposase; Region: HTH_Tnp_1; cl17663
198214004049	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004050	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
198214004051	Host-nuclease inhibitor protein Gam; Region: Gam; pfam06064
198214004052	exonuclease VIII; Reviewed; Region: PRK09709
198214004053	Enterobacterial exodeoxyribonuclease VIII; Region: Exonuc_VIII; pfam06630
198214004054	hypothetical protein; Reviewed; Region: PRK09790
198214004055	FtsZ inhibitor protein; Reviewed; Region: kil; PRK11354
198214004056	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214004057	HTH-like domain; Region: HTH_21; pfam13276
198214004058	Integrase core domain; Region: rve; pfam00665
198214004059	Integrase core domain; Region: rve_3; pfam13683
198214004060	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214004061	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004062	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214004063	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214004064	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
198214004065	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116
198214004066	Leucine Rich repeats (2 copies); Region: LRR_4; pfam12799
198214004067	Substrate binding site [chemical binding]; other site
198214004068	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214004069	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004070	'Similar to Escherichia coli K12 protein phosphatase 1 modulates phosphoproteins, signals protein misfolding gi: 1788143 (220 aa). BLAST with identity of 99% in 642 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
198214004071	putative transposase OrfB; Reviewed; Region: PHA02517
198214004072	HTH-like domain; Region: HTH_21; pfam13276
198214004073	Integrase core domain; Region: rve; pfam00665
198214004074	Integrase core domain; Region: rve_3; pfam13683
198214004075	Protein of unknown function (DUF1482); Region: DUF1482; pfam07358
198214004076	Protein of unknown function (DUF1480); Region: DUF1480; pfam07351
198214004077	NOL1/NOP2/sun family putative RNA methylase; Region: nop2p; TIGR00446
198214004078	Methyltransferase domain; Region: Methyltransf_26; pfam13659
198214004079	pre-rRNA processing and ribosome biogenesis; Region: Nol1_Nop2_Fmu_2; cl19835
198214004080	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788138 (880 aa). BLAST with identity of 97% in 875 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004081	integral membrane protein, PqiA family; Region: pqiA_fam; TIGR00155
198214004082	Paraquat-inducible protein A; Region: PqiA; pfam04403
198214004083	Paraquat-inducible protein A; Region: PqiA; pfam04403
198214004084	GAF domain-containing protein [Signal transduction mechanisms]; Region: COG1956
198214004085	ProP expression regulator; Provisional; Region: PRK04950
198214004086	putative RNA binding sites [nucleotide binding]; other site
198214004087	carboxy-terminal protease; Provisional; Region: PRK11186
198214004088	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
198214004089	protein binding site [polypeptide binding]; other site
198214004090	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
198214004091	Catalytic dyad [active]
198214004092	C-terminal domain of tail specific protease (DUF3340); Region: DUF3340; pfam11818
198214004093	heat shock protein HtpX; Provisional; Region: PRK05457
198214004094	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004095	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214004096	putative substrate translocation pore; other site
198214004097	Predicted integral membrane protein [Function unknown]; Region: COG5521
198214004098	DNA-binding transcriptional regulator KdgR; Provisional; Region: PRK15090
198214004099	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
198214004100	Bacterial transcriptional regulator; Region: IclR; pfam01614
198214004101	YobH-like protein; Region: YobH; pfam13996
198214004102	PhoPQ regulatory protein; Provisional; Region: PRK10299
198214004103	YebO-like protein; Region: YebO; pfam13974
198214004104	Protein of unknown function (DUF2627); Region: DUF2527; pfam10736
198214004105	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
198214004106	DNA-binding site [nucleotide binding]; DNA binding site
198214004107	RNA-binding motif; other site
198214004108	Methyltransferase domain; Region: Methyltransf_31; pfam13847
198214004109	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214004110	S-adenosylmethionine binding site [chemical binding]; other site
198214004111	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004112	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004113	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004114	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004115	hypothetical protein; Provisional; Region: PRK02913
198214004116	PTS system mannose-specific transporter subunit IID; Provisional; Region: PRK11103
198214004117	PTS system mannose-specific transporter subunit IIC; Provisional; Region: PRK15065
198214004118	PTS system mannose-specific transporter subunits IIAB; Provisional; Region: PRK15088
198214004119	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
198214004120	active pocket/dimerization site; other site
198214004121	active site
198214004122	phosphorylation site [posttranslational modification]
198214004123	PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001
198214004124	active site
198214004125	phosphorylation site [posttranslational modification]
198214004126	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
198214004127	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
198214004128	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
198214004129	Transporter associated domain; Region: CorC_HlyC; smart01091
198214004130	phage resistance protein; Provisional; Region: PRK10551
198214004131	CSS motif domain associated with EAL; Region: CSS-motif; pfam12792
198214004132	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214004133	L-serine deaminase; Provisional; Region: PRK15023
198214004134	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
198214004135	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
198214004136	Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative...; Region: CoAse; cd03426
198214004137	putative active site [active]
198214004138	putative CoA binding site [chemical binding]; other site
198214004139	nudix motif; other site
198214004140	aminodeoxychorismate synthase subunit I; Provisional; Region: pabB; PRK15465
198214004141	Anthranilate synthase component I, N terminal region; Region: Anth_synt_I_N; pfam04715
198214004142	aminodeoxychorismate synthase, component I, bacterial clade; Region: pabB; TIGR00553
198214004143	hypothetical protein; Provisional; Region: PRK05114
198214004144	Domain of unknown function (DUF1889); Region: DUF1889; pfam08986
198214004145	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150
198214004146	homotrimer interaction site [polypeptide binding]; other site
198214004147	putative active site [active]
198214004148	Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]; Region: DinG; COG1199
198214004149	CRISPR/Cas system-associated DinG family helicase Csf4; Region: Csf4_U; cd09708
198214004150	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
198214004151	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214
198214004152	Glycoprotease family; Region: Peptidase_M22; pfam00814
198214004153	Outer membrane lipoprotein Slp family; Region: Slp; cl01164
198214004154	long-chain-fatty-acid--CoA ligase; Validated; Region: PRK08974
198214004155	Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD; Region: FC-FACS_FadD_like; cd05936
198214004156	acyl-activating enzyme (AAE) consensus motif; other site
198214004157	putative AMP binding site [chemical binding]; other site
198214004158	putative active site [active]
198214004159	putative CoA binding site [chemical binding]; other site
198214004160	ribonuclease D; Provisional; Region: PRK10829
198214004161	DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins; Region: RNaseD_exo; cd06142
198214004162	catalytic site [active]
198214004163	putative active site [active]
198214004164	putative substrate binding site [chemical binding]; other site
198214004165	Helicase and RNase D C-terminal; Region: HRDC; smart00341
198214004166	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]; Region: Hmp; COG1018
198214004167	Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal  ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur; Region: PDR_like; cd06185
198214004168	FMN-binding pocket [chemical binding]; other site
198214004169	flavin binding motif; other site
198214004170	phosphate binding motif [ion binding]; other site
198214004171	beta-alpha-beta structure motif; other site
198214004172	NAD binding pocket [chemical binding]; other site
198214004173	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214004174	catalytic loop [active]
198214004175	iron binding site [ion binding]; other site
198214004176	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788103 (375 aa). BLAST with identity of 99% in 206 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004177	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004178	Transposase; Region: HTH_Tnp_1; pfam01527
198214004179	putative transposase OrfB; Reviewed; Region: PHA02517
198214004180	HTH-like domain; Region: HTH_21; pfam13276
198214004181	Integrase core domain; Region: rve; pfam00665
198214004182	Integrase core domain; Region: rve_3; pfam13683
198214004183	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
198214004184	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214004185	metal binding site [ion binding]; metal-binding site
198214004186	active site
198214004187	I-site; other site
198214004188	Putative hemolysin [General function prediction only]; Region: Hlx; COG3042
198214004189	Uncharacterized conserved protein [Function unknown]; Region: COG3189
198214004190	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004191	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214004192	putative substrate translocation pore; other site
198214004193	Similar to Escherichia coli K12  ARAC-type regulatory protein gi: 1788091 (274 aa). BLAST with identity of 98% in 273 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214004194	Predicted membrane protein [Function unknown]; Region: COG2707
198214004195	YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function.  The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting...; Region: YeaK; cd04336
198214004196	putative deacylase active site [active]
198214004197	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788086 (557 aa). BLAST with identity of 99% in 359 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004198	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004199	Transposase; Region: HTH_Tnp_1; pfam01527
198214004200	putative transposase OrfB; Reviewed; Region: PHA02517
198214004201	HTH-like domain; Region: HTH_21; pfam13276
198214004202	Integrase core domain; Region: rve; pfam00665
198214004203	Integrase core domain; Region: rve_3; pfam13683
198214004204	Outer membrane protein V [Cell envelope biogenesis, outer membrane]; Region: OmpV; COG3713
198214004205	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214004206	active site
198214004207	catalytic tetrad [active]
198214004208	D-hexose-6-phosphate epimerase-like; Region: D-hex-6-P-epi_like; cd09020
198214004209	active site
198214004210	phosphate binding residues; other site
198214004211	catalytic residues [active]
198214004212	glyceraldehyde-3-phosphate dehydrogenase A; Provisional; Region: gapA; PRK15425
198214004213	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
198214004214	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
198214004215	methionine sulfoxide reductase B; Provisional; Region: PRK00222
198214004216	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3139
198214004217	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
198214004218	Alcohol dehydrogenases of the MDR family; Region: Zn_ADH4; cd08258
198214004219	putative NAD(P) binding site [chemical binding]; other site
198214004220	catalytic Zn binding site [ion binding]; other site
198214004221	structural Zn binding site [ion binding]; other site
198214004222	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004223	putative substrate translocation pore; other site
198214004224	Sugar (and other) transporter; Region: Sugar_tr; pfam00083
198214004225	Similar to Escherichia coli K12  oxidoreductase gi: 1788073 (348 aa). BLAST with identity of 99% in 349 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004226	Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1; Region: TBP_aldolase_IIB; cd00947
198214004227	intersubunit interface [polypeptide binding]; other site
198214004228	active site
198214004229	zinc binding site [ion binding]; other site
198214004230	Na+ binding site [ion binding]; other site
198214004231	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
198214004232	substrate binding site [chemical binding]; other site
198214004233	ATP binding site [chemical binding]; other site
198214004234	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214004235	voltage-dependent potassium channel beta subunit, animal; Region: Kv_beta; TIGR01293
198214004236	active site
198214004237	catalytic tetrad [active]
198214004238	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
198214004239	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
198214004240	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214004241	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004242	MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879
198214004243	putative substrate translocation pore; other site
198214004244	Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is...; Region: nicotinamidase; cd01011
198214004245	catalytic triad [active]
198214004246	metal binding site [ion binding]; metal-binding site
198214004247	conserved cis-peptide bond; other site
198214004248	cytoplasmic asparaginase I; Provisional; Region: ansA; PRK09461
198214004249	Type I (cytosolic) bacterial L-asparaginase; Region: L-asparaginase_I; cd08963
198214004250	active site
198214004251	homodimer interface [polypeptide binding]; other site
198214004252	protease 4; Provisional; Region: PRK10949
198214004253	Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_SppA_67K_type; cd07018
198214004254	tandem repeat interface [polypeptide binding]; other site
198214004255	oligomer interface [polypeptide binding]; other site
198214004256	active site residues [active]
198214004257	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_SppA_1; cd07019
198214004258	tandem repeat interface [polypeptide binding]; other site
198214004259	oligomer interface [polypeptide binding]; other site
198214004260	active site residues [active]
198214004261	Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a...; Region: Arsenite_oxidase; cd02135
198214004262	putative FMN binding site [chemical binding]; other site
198214004263	selenophosphate synthetase; Provisional; Region: PRK00943
198214004264	Selenophosphate synthetase  (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The...; Region: SelD; cd02195
198214004265	dimerization interface [polypeptide binding]; other site
198214004266	putative ATP binding site [chemical binding]; other site
198214004267	DNA topoisomerase III; Provisional; Region: PRK07726
198214004268	TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving...; Region: TOPRIM_TopoIA_TopoIII; cd03362
198214004269	active site
198214004270	putative interdomain interaction site [polypeptide binding]; other site
198214004271	putative metal-binding site [ion binding]; other site
198214004272	putative nucleotide binding site [chemical binding]; other site
198214004273	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
198214004274	domain I; other site
198214004275	DNA binding groove [nucleotide binding]
198214004276	phosphate binding site [ion binding]; other site
198214004277	domain II; other site
198214004278	domain III; other site
198214004279	nucleotide binding site [chemical binding]; other site
198214004280	catalytic site [active]
198214004281	domain IV; other site
198214004282	hypothetical protein; Provisional; Region: PRK11380
198214004283	Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334
198214004284	Glu/Leu/Phe/Val dehydrogenase, dimerization domain; Region: ELFV_dehydrog_N; pfam02812
198214004285	NAD(P) binding domain of glutamate dehydrogenase, subgroup 2; Region: NAD_bind_2_Glu_DH; cd05313
198214004286	NAD(P) binding site [chemical binding]; other site
198214004287	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214004288	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004289	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214004290	HTH-like domain; Region: HTH_21; pfam13276
198214004291	Integrase core domain; Region: rve; pfam00665
198214004292	Integrase core domain; Region: rve_3; pfam13683
198214004293	Protein of unknown function (DUF1496); Region: DUF1496; pfam07383
198214004294	The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic...; Region: MutT_pyrophosphohydrolase; cd03425
198214004295	active site
198214004296	8-oxo-dGMP binding site [chemical binding]; other site
198214004297	nudix motif; other site
198214004298	metal binding site [ion binding]; metal-binding site
198214004299	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
198214004300	Similar to Escherichia coli K12  thiosulfate sulfur transferase gi: 1788054 (441 aa). BLAST with identity of 97% in 440 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004301	ABC-type uncharacterized transport system, ATPase component [General function prediction only]; Region: COG4136
198214004302	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214004303	Walker A/P-loop; other site
198214004304	ATP binding site [chemical binding]; other site
198214004305	Q-loop/lid; other site
198214004306	ABC transporter signature motif; other site
198214004307	Walker B; other site
198214004308	D-loop; other site
198214004309	H-loop/switch region; other site
198214004310	Similar to Escherichia coli K12  transport system permease gi: 1788052 (497 aa). BLAST with identity of 96% in 476 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004311	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788051 (390 aa). BLAST with identity of 97% in 868 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214004312	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214004313	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214004314	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214004315	Uncharacterized conserved protein [Function unknown]; Region: COG0398
198214004316	Uncharacterized conserved protein [Function unknown]; Region: COG0398
198214004317	Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases; Region: ExoIII-like_AP-endo; cd09086
198214004318	putative catalytic site [active]
198214004319	putative phosphate binding site [ion binding]; other site
198214004320	active site
198214004321	metal binding site A [ion binding]; metal-binding site
198214004322	DNA binding site [nucleotide binding]
198214004323	putative AP binding site [nucleotide binding]; other site
198214004324	putative metal binding site B [ion binding]; other site
198214004325	Similar to Escherichia coli N-(alpha)-acetylornithine-(delta)-aminotransferase  gb: AAB51148.1 (406 aa). BLAST with identity of 99% in 407 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004326	arginine succinyltransferase; Provisional; Region: PRK10456
198214004327	N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like; Region: ALDH_SGSD_AstD; cd07095
198214004328	NAD(P) binding site [chemical binding]; other site
198214004329	catalytic residues [active]
198214004330	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788041 (448 aa). BLAST with identity of 97% in 445 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004331	Peptidase M14 Succinylglutamate desuccinylase (ASTE) subfamily; Region: M14_ASTE; cd03855
198214004332	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
198214004333	putative active site [active]
198214004334	Zn binding site [ion binding]; other site
198214004335	CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cd09916
198214004336	dimer interface [polypeptide binding]; other site
198214004337	hypothetical protein; Provisional; Region: PRK11396
198214004338	nucleotide excision repair endonuclease; Provisional; Region: PRK10545
198214004339	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
198214004340	GIY-YIG motif/motif A; other site
198214004341	active site
198214004342	catalytic site [active]
198214004343	putative DNA binding site [nucleotide binding]; other site
198214004344	metal binding site [ion binding]; metal-binding site
198214004345	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
198214004346	homodimer interface [polypeptide binding]; other site
198214004347	NAD binding pocket [chemical binding]; other site
198214004348	ATP binding pocket [chemical binding]; other site
198214004349	Mg binding site [ion binding]; other site
198214004350	active-site loop [active]
198214004351	DNA-binding transcriptional activator OsmE; Provisional; Region: PRK11251
198214004352	PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N; Region: PTS_IIB_chitobiose_lichenan; cd05564
198214004353	active site
198214004354	P-loop; other site
198214004355	phosphorylation site [posttranslational modification]
198214004356	PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional; Region: PRK10297
198214004357	PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_lac; cd00215
198214004358	methionine cluster; other site
198214004359	active site
198214004360	phosphorylation site [posttranslational modification]
198214004361	metal binding site [ion binding]; metal-binding site
198214004362	Similar to Escherichia coli K12 negative transcriptional regulator of cel operon gi: 1788030 (281 aa). BLAST with identity of 98% in 540 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214004363	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004364	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004365	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004366	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004367	Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]; Region: CelF; COG1486
198214004368	Glycoside Hydrolases Family 4; Phospho-beta-glucosidase; Region: GH4_P_beta_glucosidase; cd05296
198214004369	NAD binding site [chemical binding]; other site
198214004370	sugar binding site [chemical binding]; other site
198214004371	divalent metal binding site [ion binding]; other site
198214004372	tetramer (dimer of dimers) interface [polypeptide binding]; other site
198214004373	dimer interface [polypeptide binding]; other site
198214004374	Enterococcus faecalis EF3048 and similar proteins; Region: YdjC_EF3048_like; cd10803
198214004375	putative active site [active]
198214004376	YdjC motif; other site
198214004377	Mg binding site [ion binding]; other site
198214004378	putative homodimer interface [polypeptide binding]; other site
198214004379	hydroperoxidase II; Provisional; Region: katE; PRK11249
198214004380	Clade 2 of the heme-binding enzyme catalase; Region: catalase_clade_2; cd08155
198214004381	tetramer interface [polypeptide binding]; other site
198214004382	heme binding pocket [chemical binding]; other site
198214004383	Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases; Region: GATase1_catalase; cd03132
198214004384	domain interactions; other site
198214004385	Cell division activator CedA; Region: CedA; pfam10729
198214004386	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004387	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004388	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004389	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004390	inner membrane protein; Provisional; Region: PRK11648
198214004391	2-deoxyglucose-6-phosphatase; Provisional; Region: PRK10826
198214004392	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
198214004393	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214004394	motif II; other site
198214004395	YniB-like protein; Region: YniB; pfam14002
198214004396	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3001
198214004397	Phosphotransferase enzyme family; Region: APH; pfam01636
198214004398	Protein of unknown function (DUF2622); Region: DUF2622; pfam11080
198214004399	1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose...; Region: FruK_PfkB_like; cd01164
198214004400	putative substrate binding site [chemical binding]; other site
198214004401	putative ATP binding site [chemical binding]; other site
198214004402	Putative salt-induced outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG3137
198214004403	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788015 (472 aa). BLAST with identity of 99% in 320 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004404	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004405	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004406	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004407	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004408	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413
198214004409	TGS _ThrRS_N:  ThrRS (threonyl-tRNA Synthetase)  is a class II tRNA synthetase that couples threonine to its cognate tRNA.  In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and...; Region: TGS_ThrRS_N; cd01667
198214004410	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; pfam07973
198214004411	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
198214004412	active site
198214004413	dimer interface [polypeptide binding]; other site
198214004414	motif 1; other site
198214004415	motif 2; other site
198214004416	motif 3; other site
198214004417	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
198214004418	anticodon binding site; other site
198214004419	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
198214004420	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
198214004421	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
198214004422	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
198214004423	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
198214004424	23S rRNA binding site [nucleotide binding]; other site
198214004425	L21 binding site [polypeptide binding]; other site
198214004426	L13 binding site [polypeptide binding]; other site
198214004427	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
198214004428	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
198214004429	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
198214004430	dimer interface [polypeptide binding]; other site
198214004431	motif 1; other site
198214004432	active site
198214004433	motif 2; other site
198214004434	motif 3; other site
198214004435	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
198214004436	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
198214004437	putative tRNA-binding site [nucleotide binding]; other site
198214004438	B3/4 domain; Region: B3_4; pfam03483
198214004439	tRNA synthetase B5 domain; Region: B5; smart00874
198214004440	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
198214004441	dimer interface [polypeptide binding]; other site
198214004442	motif 1; other site
198214004443	motif 3; other site
198214004444	motif 2; other site
198214004445	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147
198214004446	Alpha subunit of integration host factor (IHFA); Region: IHF_A; cd13835
198214004447	DNA binding site [nucleotide binding]
198214004448	dimer interface [polypeptide binding]; other site
198214004449	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
198214004450	ABC-ATPase subunit  interface; other site
198214004451	dimer interface [polypeptide binding]; other site
198214004452	putative PBP binding regions; other site
198214004453	Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per...; Region: GSH_Peroxidase; cd00340
198214004454	catalytic residues [active]
198214004455	dimer interface [polypeptide binding]; other site
198214004456	ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]; Region: BtuD; COG4138
198214004457	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
198214004458	Walker A/P-loop; other site
198214004459	ATP binding site [chemical binding]; other site
198214004460	Q-loop/lid; other site
198214004461	ABC transporter signature motif; other site
198214004462	Walker B; other site
198214004463	D-loop; other site
198214004464	H-loop/switch region; other site
198214004465	NlpC/P60 family; Region: NLPC_P60; pfam00877
198214004466	c-di-GMP phosphodiesterase class I (EAL domain) [Signal    transduction mechanisms]; Region: Rtn; COG2200
198214004467	hypothetical protein; Validated; Region: PRK00029
198214004468	Hemin uptake protein [Inorganic ion transport and metabolism]; Region: HemP; COG4256
198214004469	phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12756
198214004470	PEP synthetase regulatory protein; Provisional; Region: PRK05339
198214004471	phosphoenolpyruvate synthase; Validated; Region: PRK06464
198214004472	Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326
198214004473	PEP-utilizing enzyme, mobile domain; Region: PEP-utilizers; pfam00391
198214004474	PEP-utilizing enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
198214004475	short chain acyl-CoA synthetase; Reviewed; Region: PRK06087
198214004476	Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase); Region: CHC_CoA_lg; cd05903
198214004477	acyl-activating enzyme (AAE) consensus motif; other site
198214004478	putative AMP binding site [chemical binding]; other site
198214004479	putative active site [active]
198214004480	putative CoA binding site [chemical binding]; other site
198214004481	Ferredoxin-like protein [Energy production and conversion]; Region: FixX; COG2440
198214004482	oxidoreductase; Provisional; Region: PRK10015
198214004483	putative oxidoreductase FixC; Provisional; Region: PRK10157
198214004484	electron transfer flavoprotein subunit YdiR; Provisional; Region: PRK11916
198214004485	Electron transfer flavoprotein domain; Region: ETF; pfam01012
198214004486	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
198214004487	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714
198214004488	Ligand binding site [chemical binding]; other site
198214004489	Similar to Escherichia coli K12  ARAC-type regulatory protein gi: 1787987 (304 aa). BLAST with identity of 98% in 160 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004490	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004491	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004492	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004493	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004494	transcriptional regulator YdeO; Provisional; Region: PRK09940
198214004495	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214004496	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214004497	putative oxidoreductase; Provisional; Region: PRK09939
198214004498	The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins; Region: MopB_ydeP; cd02767
198214004499	putative molybdopterin cofactor binding site [chemical binding]; other site
198214004500	The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region...; Region: MopB_CT_ydeP; cd02787
198214004501	putative molybdopterin cofactor binding site; other site
198214004502	Mannose binding  domain of FimH and related proteins; Region: FimH_man-bind; cd10466
198214004503	mannosyl binding site [chemical binding]; other site
198214004504	Fimbrial protein; Region: Fimbrial; pfam00419
198214004505	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004506	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004507	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004508	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004509	putative transposase OrfB; Reviewed; Region: PHA02517
198214004510	HTH-like domain; Region: HTH_21; pfam13276
198214004511	Integrase core domain; Region: rve; pfam00665
198214004512	Integrase core domain; Region: rve_3; pfam13683
198214004513	Domain of unknown function (DUF1737); Region: DUF1737; pfam08410
198214004514	anti-adapter protein IraM; Provisional; Region: PRK09919
198214004515	Antitermination protein; Region: Antiterm; pfam03589
198214004516	Antitermination protein; Region: Antiterm; pfam03589
198214004517	Holliday junction resolvase [DNA replication, recombination, and repair]; Region: Rus; COG4570
198214004518	Protein of unknown function (DUF968); Region: DUF968; pfam06147
198214004519	Hok/gef family; Region: HOK_GEF; pfam01848
198214004520	Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]; Region: RelE; COG2026
198214004521	bifunctional antitoxin/transcriptional repressor RelB; Provisional; Region: PRK11235
198214004522	HTH-like domain; Region: HTH_21; pfam13276
198214004523	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
198214004524	Integrase core domain; Region: rve; pfam00665
198214004525	Integrase core domain; Region: rve_3; pfam13683
198214004526	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004527	Transposase; Region: HTH_Tnp_1; pfam01527
198214004528	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004529	putative substrate translocation pore; other site
198214004530	Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246
198214004531	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
198214004532	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
198214004533	putative selenium-binding protein YdfZ; Region: YdfZ_fam; TIGR03318
198214004534	malonic semialdehyde reductase; Provisional; Region: PRK10538
198214004535	classical (c) SDR, subgroup 5; Region: SDR_c5; cd05346
198214004536	putative NAD(P) binding site [chemical binding]; other site
198214004537	homodimer interface [polypeptide binding]; other site
198214004538	homotetramer interface [polypeptide binding]; other site
198214004539	active site
198214004540	Zn-dependent oligopeptidases [Amino acid transport and metabolism]; Region: Dcp; COG0339
198214004541	Peptidase family M3 dipeptidyl carboxypeptidase (DCP); Region: M3A_DCP; cd06456
198214004542	active site
198214004543	Zn binding site [ion binding]; other site
198214004544	hypothetical protein; Validated; Region: PRK03657
198214004545	putative transposase OrfB; Reviewed; Region: PHA02517
198214004546	HTH-like domain; Region: HTH_21; pfam13276
198214004547	Integrase core domain; Region: rve; pfam00665
198214004548	Integrase core domain; Region: rve_3; pfam13683
198214004549	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004550	putative substrate translocation pore; other site
198214004551	putative transporter; Provisional; Region: PRK10054
198214004552	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
198214004553	EamA-like transporter family; Region: EamA; pfam00892
198214004554	MarB protein; Region: MarB; pfam13999
198214004555	DNA-binding transcriptional activator MarA; Provisional; Region: PRK11511
198214004556	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214004557	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214004558	MarR family; Region: MarR_2; cl17246
198214004559	Transcriptional regulators [Transcription]; Region: MarR; COG1846
198214004560	inner membrane protein; Provisional; Region: PRK10995
198214004561	Similar to Escherichia coli K12  aldehyde dehydrogenase gi: 1787805 (471 aa). BLAST with identity of 98% in 240 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004562	glutaminase; Provisional; Region: PRK00971
198214004563	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214004564	metal binding site [ion binding]; metal-binding site
198214004565	active site
198214004566	I-site; other site
198214004567	altronate oxidoreductase; Provisional; Region: PRK03643
198214004568	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
198214004569	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
198214004570	Predicted membrane protein [Function unknown]; Region: COG3781
198214004571	Trans-aconitate methyltransferase [General function prediction only]; Region: Tam; COG4106
198214004572	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214004573	S-adenosylmethionine binding site [chemical binding]; other site
198214004574	autoinducer-2 (AI-2) modifying protein LsrG; Provisional; Region: PRK10486
198214004575	Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs); Region: DhnA; cd00958
198214004576	putative active site; other site
198214004577	catalytic residue [active]
198214004578	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214004579	HTH-like domain; Region: HTH_21; pfam13276
198214004580	Integrase core domain; Region: rve; pfam00665
198214004581	Integrase core domain; Region: rve_3; pfam13683
198214004582	Similar to Escherichia coli K12  kinase gi: 1787789 (531 aa). BLAST with identity of 98% in 274 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004583	transcriptional regulator LsrR; Provisional; Region: PRK15418
198214004584	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl17320
198214004585	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
198214004586	autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional; Region: PRK15439
198214004587	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
198214004588	Walker A/P-loop; other site
198214004589	ATP binding site [chemical binding]; other site
198214004590	Q-loop/lid; other site
198214004591	ABC transporter signature motif; other site
198214004592	Walker B; other site
198214004593	D-loop; other site
198214004594	H-loop/switch region; other site
198214004595	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
198214004596	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214004597	TM-ABC transporter signature motif; other site
198214004598	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214004599	TM-ABC transporter signature motif; other site
198214004600	Similar to Escherichia coli K12  LACI-type transcriptional regulator gi: 1787795 (341 aa). BLAST with identity of 99% in 341 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004601	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214004602	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004603	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214004604	HTH-like domain; Region: HTH_21; pfam13276
198214004605	Integrase core domain; Region: rve; pfam00665
198214004606	Integrase core domain; Region: rve_3; pfam13683
198214004607	putative transposase OrfB; Reviewed; Region: PHA02517
198214004608	HTH-like domain; Region: HTH_21; pfam13276
198214004609	Integrase core domain; Region: rve; pfam00665
198214004610	Integrase core domain; Region: rve_2; pfam13333
198214004611	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004612	Transposase; Region: HTH_Tnp_1; pfam01527
198214004613	bifunctional D-altronate/D-mannonate dehydratase; Provisional; Region: PRK15072
198214004614	The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of...; Region: rpsA; cd03322
198214004615	putative active site pocket [active]
198214004616	putative metal binding site [ion binding]; other site
198214004617	hypothetical protein; Provisional; Region: PRK02237
198214004618	hypothetical protein; Provisional; Region: PRK13659
198214004619	Similar to Escherichia coli K12 spermidine N1-acetyltransferase gi: 1787867 (187 aa). BLAST with identity of 98% in 187 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214004620	Uncharacterized protein family (UPF0257); Region: UPF0257; pfam06788
198214004621	Protein of unknown function (DUF1161); Region: DUF1161; pfam06649
198214004622	Protein of unknown function (DUF1682); Region: DUF1682; pfam07946
198214004623	Integrase [DNA replication, recombination, and repair]; Region: XerC; COG0582
198214004624	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
198214004625	active site
198214004626	DNA binding site [nucleotide binding]
198214004627	Int/Topo IB signature motif; other site
198214004628	putative transposase OrfB; Reviewed; Region: PHA02517
198214004629	HTH-like domain; Region: HTH_21; pfam13276
198214004630	Integrase core domain; Region: rve; pfam00665
198214004631	Integrase core domain; Region: rve_3; pfam13683
198214004632	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004633	Transposase; Region: HTH_Tnp_1; cl17663
198214004634	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
198214004635	The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a  predicted...; Region: MopB_CT_DmsA-EC; cd02794
198214004636	putative molybdopterin cofactor binding site; other site
198214004637	'Similar to Escherichia coli K12  oxidoreductase, major subunit gi: 1787871 (809 aa). BLAST with identity of 98% in 681 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.'
198214004638	DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951
198214004639	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214004640	DMSO reductase anchor subunit (DmsC); Region: DmsC; pfam04976
198214004641	twin-argninine leader-binding protein DmsD; Provisional; Region: PRK11621
198214004642	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400
198214004643	Cl- selectivity filter; other site
198214004644	Cl- binding residues [ion binding]; other site
198214004645	pore gating glutamate residue; other site
198214004646	dimer interface [polypeptide binding]; other site
198214004647	putative dithiobiotin synthetase; Provisional; Region: PRK12374
198214004648	AAA domain; Region: AAA_26; pfam13500
198214004649	Iron dependent repressor, N-terminal DNA binding domain; Region: Fe_dep_repress; pfam01325
198214004650	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
198214004651	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214004652	nucleotide binding site [chemical binding]; other site
198214004653	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
198214004654	DNA-binding transcriptional activator XapR; Provisional; Region: PRK09986
198214004655	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214004656	The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414
198214004657	dimerization interface [polypeptide binding]; other site
198214004658	substrate binding pocket [chemical binding]; other site
198214004659	Similar to Escherichia coli K12  transport protein gi: 1787880 (418 aa). BLAST with identity of 98% in 418 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004660	acid shock protein precursor; Provisional; Region: PRK03577
198214004661	V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]; Region: COG3591
198214004662	multidrug efflux system protein MdtI; Provisional; Region: PRK10650
198214004663	multidrug efflux system protein MdtJ; Provisional; Region: PRK10452
198214004664	pheromone autoinducer 2 transporter; Reviewed; Region: tqsA; PRK12287
198214004665	pyridine nucleotide transhydrogenase; Provisional; Region: pntB; PRK09444
198214004666	NAD(P) transhydrogenase subunit alpha; Provisional; Region: pntA; PRK09424
198214004667	Rubrum transdehydrogenase NAD-binding and catalytic domains; Region: Rubrum_tdh; cd05304
198214004668	ligand binding site [chemical binding]; other site
198214004669	homodimer interface [polypeptide binding]; other site
198214004670	NAD(P) binding site [chemical binding]; other site
198214004671	trimer interface B [polypeptide binding]; other site
198214004672	trimer interface A [polypeptide binding]; other site
198214004673	Domain of unknown function (DUF3814); Region: DUF3814; pfam12769
198214004674	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214004675	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214004676	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214004677	transporter, basic amino acid/polyamine antiporter (APA) family; Region: 2A0302; TIGR00905
198214004678	Spore germination protein; Region: Spore_permease; cl17796
198214004679	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: FabG; COG1028
198214004680	pteridine reductase (PR), classical (c) SDRs; Region: PR_SDR_c; cd05357
198214004681	NADP binding site [chemical binding]; other site
198214004682	substrate binding pocket [chemical binding]; other site
198214004683	active site
198214004684	GlpM protein; Region: GlpM; pfam06942
198214004685	DNA-binding transcriptional regulator RstA; Provisional; Region: PRK10701
198214004686	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214004687	active site
198214004688	phosphorylation site [posttranslational modification]
198214004689	intermolecular recognition site; other site
198214004690	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214004691	DNA binding site [nucleotide binding]
198214004692	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
198214004693	sensor protein RstB; Provisional; Region: PRK10604
198214004694	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214004695	dimerization interface [polypeptide binding]; other site
198214004696	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214004697	dimer interface [polypeptide binding]; other site
198214004698	phosphorylation site [posttranslational modification]
198214004699	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214004700	ATP binding site [chemical binding]; other site
198214004701	Mg2+ binding site [ion binding]; other site
198214004702	G-X-G motif; other site
198214004703	DNA replication terminus site-binding protein; Provisional; Region: PRK02951
198214004704	fumarate hydratase; Reviewed; Region: fumC; PRK00485
198214004705	Class II fumarases; Region: Fumarase_classII; cd01362
198214004706	active site
198214004707	tetramer interface [polypeptide binding]; other site
198214004708	fumarate hydratase; Provisional; Region: PRK15389
198214004709	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]; Region: TtdA; COG1951
198214004710	Fumarase C-terminus; Region: Fumerase_C; pfam05683
198214004711	Phosphomannose isomerase [Carbohydrate transport and metabolism]; Region: ManA; COG1482
198214004712	mannose-6-phosphate isomerase; Provisional; Region: PRK15131
198214004713	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5339
198214004714	Similar to Escherichia coli K12 glucuronide permease gi: 1787902 (458 aa). BLAST with identity of 98% in 344 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004715	beta-D-glucuronidase; Provisional; Region: PRK10150
198214004716	Glycosyl hydrolases family 2, sugar binding domain; Region: Glyco_hydro_2_N; pfam02837
198214004717	Glycosyl hydrolases family 2; Region: Glyco_hydro_2; pfam00703
198214004718	Glycosyl hydrolases family 2, TIM barrel domain; Region: Glyco_hydro_2_C; pfam02836
198214004719	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
198214004720	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214004721	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004722	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004723	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004724	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004725	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
198214004726	NAD(P) binding site [chemical binding]; other site
198214004727	active site
198214004728	DNA-binding transcriptional repressor MalI; Provisional; Region: PRK10014
198214004729	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214004730	DNA binding site [nucleotide binding]
198214004731	domain linker motif; other site
198214004732	Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria; Region: PBP1_MalI_like; cd06289
198214004733	putative dimerization interface [polypeptide binding]; other site
198214004734	putative ligand binding site [chemical binding]; other site
198214004735	bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional; Region: PRK10110
198214004736	PTS system, maltose and glucose-specific subfamily, IIC component; Region: pts-Glc; TIGR00852
198214004737	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214004738	active site turn [active]
198214004739	phosphorylation site [posttranslational modification]
198214004740	putative C-S lyase; Region: C_S_lyase_PatB; TIGR04350
198214004741	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214004742	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214004743	homodimer interface [polypeptide binding]; other site
198214004744	catalytic residue [active]
198214004745	Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in...; Region: ADA; cd01320
198214004746	active site
198214004747	purine riboside binding site [chemical binding]; other site
198214004748	putative oxidoreductase; Provisional; Region: PRK11579
198214004749	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
198214004750	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
198214004751	oriC-binding nucleoid-associated protein; Provisional; Region: PRK10391
198214004752	Protein of unknown function (DUF2569); Region: DUF2569; pfam10754
198214004753	electron transport complex protein RsxA; Provisional; Region: PRK05151
198214004754	electron transport complex protein RnfB; Provisional; Region: PRK05113
198214004755	Putative Fe-S cluster; Region: FeS; pfam04060
198214004756	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214004757	electron transport complex protein RnfC; Provisional; Region: PRK05035
198214004758	RnfC Barrel sandwich hybrid domain; Region: RnfC_N; pfam13375
198214004759	Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512
198214004760	SLBB domain; Region: SLBB; pfam10531
198214004761	4Fe-4S dicluster domain; Region: Fer4_17; pfam13534
198214004762	electron transport complex protein RnfD; Reviewed; Region: rnfD; PRK00816
198214004763	electron transport complex protein RnfG; Validated; Region: PRK01908
198214004764	electron transport complex RsxE subunit; Provisional; Region: PRK12405
198214004765	endonuclease III; Provisional; Region: PRK10702
198214004766	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
198214004767	minor groove reading motif; other site
198214004768	helix-hairpin-helix signature motif; other site
198214004769	substrate binding pocket [chemical binding]; other site
198214004770	active site
198214004771	iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3); Region: FES; smart00525
198214004772	Dipeptide/tripeptide permease [Amino acid transport and metabolism]; Region: PTR2; COG3104
198214004773	putative tripeptide transporter permease; Reviewed; Region: tppB; PRK09584
198214004774	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004775	putative substrate translocation pore; other site
198214004776	glutathionine S-transferase; Provisional; Region: PRK10542
198214004777	GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens; Region: GST_N_Beta; cd03057
198214004778	C-terminal domain interface [polypeptide binding]; other site
198214004779	GSH binding site (G-site) [chemical binding]; other site
198214004780	dimer interface [polypeptide binding]; other site
198214004781	C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Region: GST_C_Beta; cd03188
198214004782	N-terminal domain interface [polypeptide binding]; other site
198214004783	dimer interface [polypeptide binding]; other site
198214004784	substrate binding pocket (H-site) [chemical binding]; other site
198214004785	Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and...; Region: pyridoxal_pyridoxamine_kinase; cd01173
198214004786	dimer interface [polypeptide binding]; other site
198214004787	pyridoxal binding site [chemical binding]; other site
198214004788	ATP binding site [chemical binding]; other site
198214004789	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
198214004790	Protein of unknown function (DUF2859); Region: DUF2859; cl12633
198214004791	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
198214004792	active site
198214004793	HIGH motif; other site
198214004794	dimer interface [polypeptide binding]; other site
198214004795	KMSKS motif; other site
198214004796	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214004797	RNA binding surface [nucleotide binding]; other site
198214004798	pyridoxamine 5'-phosphate oxidase; Provisional; Region: PRK05679
198214004799	Pyridoxamine 5'-phosphate oxidase; Region: Pyridox_oxidase; pfam01243
198214004800	Pyridoxine 5'-phosphate oxidase C-terminal dimerization region; Region: PNPOx_C; pfam10590
198214004801	Membrane-bound lysozyme-inhibitor of c-type lysozyme; Region: MliC; cl01604
198214004802	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214004803	HTH-like domain; Region: HTH_21; pfam13276
198214004804	Integrase core domain; Region: rve; pfam00665
198214004805	Integrase core domain; Region: rve_3; pfam13683
198214004806	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214004807	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214004808	Uncharacterized protein family (UPF0075); Region: UPF0075; pfam03702
198214004809	Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]; Region: SlyB; COG3133
198214004810	transcriptional regulator SlyA; Provisional; Region: PRK03573
198214004811	Transcriptional regulators [Transcription]; Region: MarR; COG1846
198214004812	Protein of unknown function (DUF1656); Region: DUF1656; pfam07869
198214004813	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
198214004814	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214004815	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214004816	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787933 (671 aa). BLAST with identity of 98% in 670 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004817	Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the...; Region: Cu-Zn_Superoxide_Dismutase; cd00305
198214004818	E-class dimer interface [polypeptide binding]; other site
198214004819	P-class dimer interface [polypeptide binding]; other site
198214004820	active site
198214004821	Cu2+ binding site [ion binding]; other site
198214004822	Zn2+ binding site [ion binding]; other site
198214004823	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214004824	active site
198214004825	catalytic tetrad [active]
198214004826	Predicted Fe-S protein [General function prediction only]; Region: COG3313
198214004827	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
198214004828	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214004829	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
198214004830	FMN binding site [chemical binding]; other site
198214004831	active site
198214004832	substrate binding site [chemical binding]; other site
198214004833	catalytic residue [active]
198214004834	Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233
198214004835	dimer interface [polypeptide binding]; other site
198214004836	active site
198214004837	metal binding site [ion binding]; metal-binding site
198214004838	glutathione binding site [chemical binding]; other site
198214004839	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]; Region: DnaQ; COG0847
198214004840	DEDDh 3'-5' exonuclease domain of RNase T; Region: RNaseT; cd06134
198214004841	dimer interface [polypeptide binding]; other site
198214004842	catalytic site [active]
198214004843	putative active site [active]
198214004844	putative substrate binding site [chemical binding]; other site
198214004845	Similar to Escherichia coli K12 member of ATP-dependent helicase superfamily II gi: 1787942 (1539 aa). BLAST with identity of 98% in 1486 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004846	Similar to Escherichia coli K12  virulence protein gi: 1787702 (403 aa). BLAST with identity of 98% in 401 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004847	Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028
198214004848	putative GSH binding site [chemical binding]; other site
198214004849	catalytic residues [active]
198214004850	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
198214004851	NlpC/P60 family; Region: NLPC_P60; pfam00877
198214004852	superoxide dismutase; Provisional; Region: PRK10543
198214004853	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
198214004854	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
198214004855	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
198214004856	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004857	putative substrate translocation pore; other site
198214004858	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074
198214004859	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214004860	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214004861	dimerization interface [polypeptide binding]; other site
198214004862	putative transporter; Provisional; Region: PRK11043
198214004863	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004864	putative substrate translocation pore; other site
198214004865	Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]; Region: Cfa; COG2230
198214004866	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
198214004867	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214004868	S-adenosylmethionine binding site [chemical binding]; other site
198214004869	riboflavin synthase subunit alpha; Provisional; Region: PRK13020
198214004870	Lumazine binding domain; Region: Lum_binding; pfam00677
198214004871	Lumazine binding domain; Region: Lum_binding; pfam00677
198214004872	Similar to Escherichia coli K12  transport protein gi: 1787953 (458 aa). BLAST with identity of 99% in 228 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214004873	hypothetical protein; Provisional; Region: PRK09945
198214004874	Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: AidA; COG3468
198214004875	putative monooxygenase; Provisional; Region: PRK11118
198214004876	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787957 (535 aa). BLAST with identity of 98% in 474 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214004877	hypothetical protein; Provisional; Region: PRK09946
198214004878	thiosulfate reductase cytochrome B subunit; Provisional; Region: PRK15006
198214004879	Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]; Region: COG4117
198214004880	cytochrome c nitrite reductase, Fe-S protein; Region: cyt_nit_nrfC; TIGR03149
198214004881	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214004882	hypothetical protein; Provisional; Region: PRK09947
198214004883	putative oxidoreductase; Provisional; Region: PRK09849
198214004884	Aldehyde ferredoxin oxidoreductase, N-terminal domain; Region: AFOR_N; cl08354
198214004885	Aldehyde ferredoxin oxidoreductase, domains 2 & 3; Region: AFOR_C; pfam01314
198214004886	hypothetical protein; Provisional; Region: PRK09898
198214004887	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214004888	hypothetical protein; Provisional; Region: PRK10292
198214004889	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004890	pyruvate kinase; Provisional; Region: PRK09206
198214004891	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cd00288
198214004892	domain interfaces; other site
198214004893	active site
198214004894	murein lipoprotein; Provisional; Region: PRK15396
198214004895	L,D-transpeptidase; Provisional; Region: PRK10260
198214004896	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214004897	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
198214004898	cysteine desufuration protein SufE; Provisional; Region: PRK09296
198214004899	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787970 (407 aa). BLAST with identity of 98% in 852 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214004900	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214004901	cysteine desulfurase activator complex subunit SufD; Provisional; Region: PRK10948
198214004902	Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]; Region: SufB; COG0719
198214004903	cysteine desulfurase ATPase component; Reviewed; Region: sufC; PRK09580
198214004904	ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Region: ABC_FeS_Assembly; cd03217
198214004905	Walker A/P-loop; other site
198214004906	ATP binding site [chemical binding]; other site
198214004907	Q-loop/lid; other site
198214004908	ABC transporter signature motif; other site
198214004909	Walker B; other site
198214004910	D-loop; other site
198214004911	H-loop/switch region; other site
198214004912	cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814
198214004913	Uncharacterized protein family (UPF0051); Region: UPF0051; pfam01458
198214004914	iron-sulfur cluster assembly scaffold protein; Provisional; Region: sufA; PRK09504
198214004915	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
198214004916	CoenzymeA binding site [chemical binding]; other site
198214004917	subunit interaction site [polypeptide binding]; other site
198214004918	PHB binding site; other site
198214004919	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
198214004920	FAD binding domain; Region: FAD_binding_4; pfam01565
198214004921	FAD linked oxidases, C-terminal domain; Region: FAD-oxidase_C; pfam02913
198214004922	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
198214004923	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
198214004924	putative inner membrane protein; Provisional; Region: PRK10983
198214004925	Domain of unknown function (DUF1870); Region: DUF1870; pfam08965
198214004926	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004927	putative substrate translocation pore; other site
198214004928	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214004929	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214004930	putative substrate translocation pore; other site
198214004931	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214004932	quinate/shikimate dehydrogenase; Reviewed; Region: PRK12749
198214004933	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
198214004934	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
198214004935	shikimate binding site; other site
198214004936	NAD(P) binding site [chemical binding]; other site
198214004937	Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase); Region: DHQase_I; cd00502
198214004938	active site
198214004939	catalytic residue [active]
198214004940	dimer interface [polypeptide binding]; other site
198214004941	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004942	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004943	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004944	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004945	Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]; Region: AslA; COG3119
198214004946	Sulfatase; Region: Sulfatase; pfam00884
198214004947	anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942
198214004948	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214004949	FeS/SAM binding site; other site
198214004950	radical SAM additional 4Fe4S-binding SPASM domain; Region: rSAM_more_4Fe4S; TIGR04085
198214004951	Similar to Escherichia coli K12  ATP-binding component of a transport system gi: 1787772 (562 aa). BLAST with identity of 98% in 562 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214004952	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
198214004953	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
198214004954	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004955	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004956	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004957	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004958	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004959	DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and...; Region: DOPA_deC_like; cd06450
198214004960	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214004961	catalytic residue [active]
198214004962	glutamate:gamma-aminobutyrate antiporter; Region: 2A0307_GadC; TIGR00910
198214004963	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1649
198214004964	Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide,  which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic...; Region: sensor_globin; cd01068
198214004965	heme-binding site [chemical binding]; other site
198214004966	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214004967	metal binding site [ion binding]; metal-binding site
198214004968	active site
198214004969	Similar to Escherichia coli K12  enzyme gi: 1787765 (808 aa). BLAST with identity of 98% in 206 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004970	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787763 (194 aa). BLAST with identity of 97% in 111 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214004971	Similar to Escherichia coli K12  transport protein gi: 1787760 (299 aa). BLAST with identity of 98% in 299 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214004972	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
198214004973	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214004974	Walker A/P-loop; other site
198214004975	ATP binding site [chemical binding]; other site
198214004976	Q-loop/lid; other site
198214004977	ABC transporter signature motif; other site
198214004978	Walker B; other site
198214004979	D-loop; other site
198214004980	H-loop/switch region; other site
198214004981	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
198214004982	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppF; COG1124
198214004983	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214004984	Walker A/P-loop; other site
198214004985	ATP binding site [chemical binding]; other site
198214004986	Q-loop/lid; other site
198214004987	ABC transporter signature motif; other site
198214004988	Walker B; other site
198214004989	D-loop; other site
198214004990	H-loop/switch region; other site
198214004991	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; pfam08352
198214004992	peroxiredoxin, OsmC subfamily; Region: osmo_induc_OsmC; TIGR03562
198214004993	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214004994	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214004995	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214004996	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214004997	malate dehydrogenase; Provisional; Region: PRK13529
198214004998	Malic enzyme, N-terminal domain; Region: malic; pfam00390
198214004999	NAD(P) binding domain of malic enzyme (ME), subgroup 1; Region: NAD_bind_1_malic_enz; cd05312
198214005000	NAD(P) binding site [chemical binding]; other site
198214005001	ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional; Region: PRK09422
198214005002	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD3; cd08297
198214005003	NAD binding site [chemical binding]; other site
198214005004	substrate binding site [chemical binding]; other site
198214005005	catalytic Zn binding site [ion binding]; other site
198214005006	tetramer interface [polypeptide binding]; other site
198214005007	structural Zn binding site [ion binding]; other site
198214005008	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214005009	non-specific DNA binding site [nucleotide binding]; other site
198214005010	salt bridge; other site
198214005011	sequence-specific DNA binding site [nucleotide binding]; other site
198214005012	formate dehydrogenase-N subunit gamma; Provisional; Region: PRK10179
198214005013	formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582
198214005014	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214005015	Formate dehydrogenase N, transmembrane; Region: Form-deh_trans; pfam09163
198214005016	formate dehydrogenase, alpha subunit, proteobacterial-type; Region: formate-DH-alph; TIGR01553
198214005017	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752
198214005018	[4Fe-4S] binding site [ion binding]; other site
198214005019	molybdopterin cofactor binding site; other site
198214005020	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_CT_Formate-Dh-Na-like; cd02792
198214005021	molybdopterin cofactor binding site; other site
198214005022	aromatic amino acid exporter; Provisional; Region: PRK11689
198214005023	EamA-like transporter family; Region: EamA; pfam00892
198214005024	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005025	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005026	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005027	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005028	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
198214005029	trimer interface [polypeptide binding]; other site
198214005030	eyelet of channel; other site
198214005031	Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond...; Region: LRR_RI; cd00116
198214005032	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005033	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005034	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005035	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005036	nitrate/nitrite transport protein NarU; Provisional; Region: PRK15034
198214005037	Nitrate/nitrite transporter [Inorganic ion transport and metabolism]; Region: NarK; COG2223
198214005038	'Similar to Escherichia coli K12 cryptic nitrate reductase 2, alpha subunit  ref: NP_415985.1 (1246 aa). BLAST with identity of 100% in 1266 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214005039	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214005040	4Fe-4S dicluster domain; Region: Fer4_10; pfam13237
198214005041	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214005042	Putative transposase; Region: Y2_Tnp; pfam04986
198214005043	colanic acid/biofilm transcriptional regulator; Provisional; Region: PRK11414
198214005044	DNA-binding site [nucleotide binding]; DNA binding site
198214005045	helix_turn_helix gluconate operon transcriptional repressor; Region: HTH_GNTR; smart00345
198214005046	FCD domain; Region: FCD; pfam07729
198214005047	Putative NADP-dependent oxidoreductases [General function prediction only]; Region: COG2130
198214005048	Prostaglandin dehydrogenases; Region: PGDH; cd05288
198214005049	NAD(P) binding site [chemical binding]; other site
198214005050	substrate binding site [chemical binding]; other site
198214005051	dimer interface [polypeptide binding]; other site
198214005052	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214005053	HTH-like domain; Region: HTH_21; pfam13276
198214005054	Integrase core domain; Region: rve; pfam00665
198214005055	Integrase core domain; Region: rve_3; pfam13683
198214005056	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214005057	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005058	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
198214005059	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214005060	Coenzyme A binding pocket [chemical binding]; other site
198214005061	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3238
198214005062	Protein of unknown function (DUF2526); Region: DUF2526; pfam10735
198214005063	Protein of unknown function (DUF2566); Region: DUF2566; pfam10753
198214005064	Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and...; Region: LbH_XAT; cd03349
198214005065	trimer interface [polypeptide binding]; other site
198214005066	active site
198214005067	substrate binding site [chemical binding]; other site
198214005068	CoA binding site [chemical binding]; other site
198214005069	Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like; Region: ALDH_ABALDH-YdcW; cd07092
198214005070	tetrameric interface [polypeptide binding]; other site
198214005071	NAD binding site [chemical binding]; other site
198214005072	catalytic residues [active]
198214005073	substrate binding site [chemical binding]; other site
198214005074	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
198214005075	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214005076	dimer interface [polypeptide binding]; other site
198214005077	conserved gate region; other site
198214005078	putative PBP binding loops; other site
198214005079	ABC-ATPase subunit interface; other site
198214005080	Similar to Escherichia coli K12  transport system permease gi: 1787713 (314 aa). BLAST with identity of 100% in 115 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005081	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214005082	Putative transposase; Region: Y2_Tnp; pfam04986
198214005083	Similar to Escherichia coli K12  virulence protein gi: 1787702 (403 aa). BLAST with identity of 98% in 297 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005084	tellurite resistance protein TehB; Provisional; Region: PRK11207
198214005085	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214005086	S-adenosylmethionine binding site [chemical binding]; other site
198214005087	Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes TehA protein; Region: TDT_TehA; cd09324
198214005088	gating phenylalanine in ion channel; other site
198214005089	Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cd00208
198214005090	putative trimer interface [polypeptide binding]; other site
198214005091	Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160
198214005092	putative CoA binding site [chemical binding]; other site
198214005093	putative trimer interface [polypeptide binding]; other site
198214005094	putative CoA binding site [chemical binding]; other site
198214005095	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
198214005096	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214005097	Coenzyme A binding pocket [chemical binding]; other site
198214005098	hypothetical protein; Provisional; Region: PRK11415
198214005099	Periplasmic glucans biosynthesis protein [Inorganic ion transport and metabolism]; Region: MdoG; COG3131
198214005100	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG5383
198214005101	pca operon transcription factor PcaQ; Region: TF_pcaQ; TIGR02424
198214005102	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214005103	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214005104	dimerization interface [polypeptide binding]; other site
198214005105	methyl-accepting chemotaxis protein II; Provisional; Region: PRK15048
198214005106	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
198214005107	dimer interface [polypeptide binding]; other site
198214005108	ligand binding site [chemical binding]; other site
198214005109	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214005110	dimerization interface [polypeptide binding]; other site
198214005111	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
198214005112	dimer interface [polypeptide binding]; other site
198214005113	putative CheW interface [polypeptide binding]; other site
198214005114	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005115	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214005116	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214005117	putative transposase OrfB; Reviewed; Region: PHA02517
198214005118	HTH-like domain; Region: HTH_21; pfam13276
198214005119	Integrase core domain; Region: rve; pfam00665
198214005120	Integrase core domain; Region: rve_3; pfam13683
198214005121	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005122	Transposase; Region: HTH_Tnp_1; pfam01527
198214005123	small toxic polypeptide; Provisional; Region: PRK09738
198214005124	hypothetical protein; Provisional; Region: PRK10040
198214005125	cytochrome b561; Provisional; Region: PRK11513
198214005126	glyceraldehyde-3-phosphate dehydrogenase, type I; Region: GAPDH-I; TIGR01534
198214005127	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
198214005128	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
198214005129	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; cl19935
198214005130	Escherichia coli lactaldehyde dehydrogenase AldA-like; Region: ALDH_LactADH-AldA; cd07088
198214005131	NAD binding site [chemical binding]; other site
198214005132	catalytic residues [active]
198214005133	substrate binding site [chemical binding]; other site
198214005134	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787683 (267 aa). BLAST with identity of 98% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005135	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005136	Transposase; Region: HTH_Tnp_1; cl17663
198214005137	putative transposase OrfB; Reviewed; Region: PHA02517
198214005138	HTH-like domain; Region: HTH_21; pfam13276
198214005139	Integrase core domain; Region: rve; pfam00665
198214005140	Integrase core domain; Region: rve_3; pfam13683
198214005141	HTH-like domain; Region: HTH_21; pfam13276
198214005142	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
198214005143	Integrase core domain; Region: rve; pfam00665
198214005144	Integrase core domain; Region: rve_3; pfam13683
198214005145	ATP-dependent RNA helicase HrpA; Provisional; Region: PRK11131
198214005146	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214005147	ATP binding site [chemical binding]; other site
198214005148	putative Mg++ binding site [ion binding]; other site
198214005149	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214005150	nucleotide binding region [chemical binding]; other site
198214005151	ATP-binding site [chemical binding]; other site
198214005152	Helicase associated domain (HA2); Region: HA2; pfam04408
198214005153	Oligonucleotide/oligosaccharide-binding (OB)-fold; Region: OB_NTP_bind; pfam07717
198214005154	Domain of unknown function (DUF3418); Region: DUF3418; pfam11898
198214005155	azoreductase; Reviewed; Region: PRK00170
198214005156	Similar to Escherichia coli K12  enzymes gi: 1787679 (431 aa). BLAST with identity of 98% in 850 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214005157	Dual specificity phosphatase, catalytic domain; Region: DSPc; smart00195
198214005158	Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]; Region: CDC14; COG2453
198214005159	active site
198214005160	catalytic residues [active]
198214005161	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005162	Transposase; Region: HTH_Tnp_1; pfam01527
198214005163	putative transposase OrfB; Reviewed; Region: PHA02517
198214005164	HTH-like domain; Region: HTH_21; pfam13276
198214005165	Integrase core domain; Region: rve; pfam00665
198214005166	Integrase core domain; Region: rve_3; pfam13683
198214005167	PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin; Region: PAP2_Aur1_like; cd03386
198214005168	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
198214005169	active site
198214005170	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
198214005171	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
198214005172	Putative methyltransferase; Region: Methyltransf_20; pfam12147
198214005173	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214005174	S-adenosylmethionine binding site [chemical binding]; other site
198214005175	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
198214005176	Protein of unknown function (DUF342); Region: DUF342; cl19219
198214005177	Protein of unknown function (DUF2773); Region: DUF2773; pfam10971
198214005178	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005179	Similar to Escherichia coli K12 heat shock protein hslJ  ref: NP_415897.1 (140 aa). BLAST with identity of 99% in 114 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005180	D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; Region: LDH_like_2; cd12183
198214005181	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
198214005182	putative ligand binding site [chemical binding]; other site
198214005183	putative NAD binding site [chemical binding]; other site
198214005184	catalytic site [active]
198214005185	hypothetical protein; Provisional; Region: PRK10695
198214005186	YnbE-like lipoprotein; Region: Lipoprotein_19; pfam13617
198214005187	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3784
198214005188	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005189	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005190	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005191	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005192	Similar to Escherichia coli K12 heat shock protein hslJ gi: 1787644 (141 aa). BLAST with identity of 99% in 40 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005193	Putative hemolysin [General function prediction only]; Region: Hlx; COG3042
198214005194	pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Region: pyruv_ox_red; TIGR02176
198214005195	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
198214005196	dimer interface [polypeptide binding]; other site
198214005197	PYR/PP interface [polypeptide binding]; other site
198214005198	TPP binding site [chemical binding]; other site
198214005199	substrate binding site [chemical binding]; other site
198214005200	Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Energy production and conversion]; Region: PorG; COG1014
198214005201	Domain of unknown function; Region: EKR; pfam10371
198214005202	4Fe-4S double cluster binding domain; Region: Fer4_16; pfam13484
198214005203	Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This...; Region: TPP_PFOR_PNO; cd03377
198214005204	TPP-binding site [chemical binding]; other site
198214005205	dimer interface [polypeptide binding]; other site
198214005206	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
198214005207	Ligand Binding Site [chemical binding]; other site
198214005208	tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696
198214005209	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_II; cd01993
198214005210	Ligand Binding Site [chemical binding]; other site
198214005211	ATP-dependent RNA helicase DbpA; Provisional; Region: PRK11776
198214005212	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
198214005213	ATP binding site [chemical binding]; other site
198214005214	Mg++ binding site [ion binding]; other site
198214005215	motif III; other site
198214005216	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214005217	nucleotide binding region [chemical binding]; other site
198214005218	ATP-binding site [chemical binding]; other site
198214005219	RNA recognition motif in Escherichia coli RNA helicase dbpA and similar proteins; Region: RRM_EcDbpA_like; cd12501
198214005220	putative RNA binding site [nucleotide binding]; other site
198214005221	CorA-like Mg2+ transporter protein; Region: CorA; pfam01544
198214005222	Salmonella typhimurium Zn2+ transporter ZntB-like subgroup; Region: ZntB-like_1; cd12833
198214005223	Cl binding site [ion binding]; other site
198214005224	oligomer interface [polypeptide binding]; other site
198214005225	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787603 (431 aa). BLAST with identity of 98% in 431 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214005226	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787602 (188 aa). BLAST with identity of 98% in 187 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214005227	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
198214005228	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214005229	putative substrate translocation pore; other site
198214005230	Similar to Mesorhizobium loti probable secretion protein  ref: NP_103897.1 (367 aa). BLAST with identity of 46% in 906 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214005231	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214005232	Putative transposase; Region: Y2_Tnp; pfam04986
198214005233	Cupin domain; Region: Cupin_2; cl17218
198214005234	Helix-turn-helix domain; Region: HTH_18; pfam12833
198214005235	AbgT putative transporter family; Region: ABG_transport; cl17431
198214005236	O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Provisional; Region: PRK10286
198214005237	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; Region: Methyltransf_1N; pfam02870
198214005238	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
198214005239	DNA binding site [nucleotide binding]
198214005240	active site
198214005241	fumarate/nitrate reduction transcriptional regulator; Provisional; Region: PRK11161
198214005242	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
198214005243	ligand binding site [chemical binding]; other site
198214005244	flexible hinge region; other site
198214005245	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
198214005246	putative switch regulator; other site
198214005247	non-specific DNA interactions [nucleotide binding]; other site
198214005248	DNA binding site [nucleotide binding]
198214005249	sequence specific DNA binding site [nucleotide binding]; other site
198214005250	putative cAMP binding site [chemical binding]; other site
198214005251	universal stress protein UspE; Provisional; Region: PRK11175
198214005252	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
198214005253	Ligand Binding Site [chemical binding]; other site
198214005254	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
198214005255	Ligand Binding Site [chemical binding]; other site
198214005256	putative transposase OrfB; Reviewed; Region: PHA02517
198214005257	HTH-like domain; Region: HTH_21; pfam13276
198214005258	Integrase core domain; Region: rve; pfam00665
198214005259	Integrase core domain; Region: rve_3; pfam13683
198214005260	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005261	Transposase; Region: HTH_Tnp_1; cl17663
198214005262	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
198214005263	Mechanosensitive ion channel; Region: MS_channel; pfam00924
198214005264	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
198214005265	The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; Region: PBP2_OppA; cd08504
198214005266	peptide binding site [polypeptide binding]; other site
198214005267	Similar to Escherichia coli K12  transcriptional regulator LYSR-type gi: 1787589 (300 aa). BLAST with identity of 99% in 155 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005268	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005269	Transposase; Region: HTH_Tnp_1; pfam01527
198214005270	Transposase; Region: HTH_Tnp_1; cl17663
198214005271	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005272	putative transposase OrfB; Reviewed; Region: PHA02517
198214005273	HTH-like domain; Region: HTH_21; pfam13276
198214005274	Integrase core domain; Region: rve; pfam00665
198214005275	Integrase core domain; Region: rve_3; pfam13683
198214005276	Similar to Salmonella enterica subsp. enterica serovar Typhi  integrase  ref: NP_456439.1 (358 aa). BLAST with identity of 96% in 307 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005277	Protein of unknown function (DUF2511); Region: DUF2511; pfam10709
198214005278	Similar to Escherichia coli K12  resistance protein gi: 1788145 (291 aa). BLAST with identity of 98% in 290 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005279	hypothetical protein; Provisional; Region: PRK10301
198214005280	DNA polymerase III subunit theta; Reviewed; Region: PRK10969
198214005281	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788148 (219 aa). BLAST with identity of 99% in 219 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214005282	exodeoxyribonuclease X; Provisional; Region: PRK07983
198214005283	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
198214005284	active site
198214005285	catalytic site [active]
198214005286	substrate binding site [chemical binding]; other site
198214005287	protease 2; Provisional; Region: PRK10115
198214005288	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
198214005289	Protein of unknown function (DUF533); Region: DUF533; pfam04391
198214005290	tellurium resistance terB-like protein, subgroup 3; Region: terB_like_YebE; cd07178
198214005291	putative metal binding site [ion binding]; other site
198214005292	hypothetical protein; Provisional; Region: PRK13680
198214005293	phosphoribosylglycinamide formyltransferase 2; Validated; Region: purT; PRK09288
198214005294	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
198214005295	ATP-grasp domain; Region: ATP-grasp; pfam02222
198214005296	Entner-Doudoroff aldolase; Region: eda; TIGR01182
198214005297	KDPG and KHG aldolase; Region: KDPG_aldolase; cd00452
198214005298	active site
198214005299	intersubunit interface [polypeptide binding]; other site
198214005300	catalytic residue [active]
198214005301	phosphogluconate dehydratase; Validated; Region: PRK09054
198214005302	glucose-6-phosphate 1-dehydrogenase; Validated; Region: PRK05722
198214005303	Glucose-6-phosphate dehydrogenase, NAD binding domain; Region: G6PD_N; pfam00479
198214005304	Glucose-6-phosphate dehydrogenase, C-terminal domain; Region: G6PD_C; pfam02781
198214005305	DNA-binding transcriptional regulator HexR; Provisional; Region: PRK11302
198214005306	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
198214005307	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
198214005308	putative active site [active]
198214005309	pyruvate kinase; Provisional; Region: PRK05826
198214005310	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cd00288
198214005311	domain interfaces; other site
198214005312	active site
198214005313	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
198214005314	putative acyl-acceptor binding pocket; other site
198214005315	putative peptidase; Provisional; Region: PRK11649
198214005316	Opacity-associated protein A N-terminal motif; Region: OapA_N; pfam08525
198214005317	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214005318	Peptidase family M23; Region: Peptidase_M23; pfam01551
198214005319	ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]; Region: LraI; COG0803
198214005320	Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism; Region: ZnuA; cd01019
198214005321	metal binding site [ion binding]; metal-binding site
198214005322	high-affinity zinc transporter ATPase; Reviewed; Region: znuC; PRK09544
198214005323	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
198214005324	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
198214005325	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214005326	Walker A motif; other site
198214005327	ATP binding site [chemical binding]; other site
198214005328	Walker B motif; other site
198214005329	arginine finger; other site
198214005330	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
198214005331	Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116
198214005332	RuvA N terminal domain; Region: RuvA_N; pfam01330
198214005333	Helix-hairpin-helix domain; Region: HHH_5; pfam14520
198214005334	RuvA, C-terminal domain; Region: RuvA_C; pfam07499
198214005335	hypothetical protein; Provisional; Region: PRK11470
198214005336	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD...; Region: RuvC_resolvase; cd00529
198214005337	active site
198214005338	putative DNA-binding cleft [nucleotide binding]; other site
198214005339	dimer interface [polypeptide binding]; other site
198214005340	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788171 (247 aa). BLAST with identity of 97% in 247 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214005341	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_7; cd04664
198214005342	nudix motif; other site
198214005343	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
198214005344	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
198214005345	dimer interface [polypeptide binding]; other site
198214005346	anticodon binding site; other site
198214005347	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
198214005348	homodimer interface [polypeptide binding]; other site
198214005349	motif 1; other site
198214005350	active site
198214005351	motif 2; other site
198214005352	GAD domain; Region: GAD; pfam02938
198214005353	motif 3; other site
198214005354	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788174 (200 aa). BLAST with identity of 96% in 719 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214005355	ipaH island III
198214005356	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214005357	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214005358	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214005359	DinI-like family; Region: DinI; pfam06183
198214005360	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214005361	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
198214005362	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214005363	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214005364	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
198214005365	Phage-related protein, tail component [Function unknown]; Region: COG4733
198214005366	Putative phage tail protein; Region: Phage-tail_3; pfam13550
198214005367	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
198214005368	Interdomain contacts; other site
198214005369	Cytokine receptor motif; other site
198214005370	Domain of unknown function (DUF1983); Region: DUF1983; pfam09327
198214005371	Fibronectin type III protein; Region: DUF3672; pfam12421
198214005372	Phage-related protein, tail component [Function unknown]; Region: COG4723
198214005373	Mpr1p, Pad1p N-terminal (MPN) domains; Region: MPN; cl13996
198214005374	Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; Region: Spr; COG0791
198214005375	NlpC/P60 family; Region: NLPC_P60; cl17555
198214005376	Phage-related protein [Function unknown]; Region: gp18; COG4672
198214005377	Phage-related protein [Function unknown]; Region: COG4718
198214005378	Phage-related minor tail protein [Function unknown]; Region: COG5281
198214005379	Prophage tail length tape measure protein; Region: TMP_2; pfam06791
198214005380	Menaquinone biosynthesis; Region: VitK2_biosynth; cl17475
198214005381	Lambda phage tail tape-measure protein (Tape_meas_lam_C); Region: Tape_meas_lam_C; cl19901
198214005382	Minor tail protein T; Region: Phage_tail_T; cl05636
198214005383	Bacteriophage lambda minor tail protein (GpG); Region: Phage_lambd_GpG; cl06106
198214005384	Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]; Region: COG5492
198214005385	Phage tail protein; Region: Phage_tail_3; pfam08813
198214005386	Bacterial Ig-like domain (group 2); Region: Big_2; pfam02368
198214005387	Phage minor tail protein U; Region: Phage_tail_U; pfam06141
198214005388	Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763
198214005389	Phage Head-Tail Attachment; Region: Phage_attach; pfam05354
198214005390	DNA packaging protein FI; Region: Packaging_FI; pfam14000
198214005391	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214005392	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214005393	Y-family of DNA polymerases; Region: PolY; cl12025
198214005394	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214005395	Phage antitermination protein Q; Region: Phage_antiter_Q; pfam06323
198214005396	Holliday junction resolvase [DNA replication, recombination, and repair]; Region: Rus; COG4570
198214005397	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005398	Transposase; Region: HTH_Tnp_1; pfam01527
198214005399	putative transposase OrfB; Reviewed; Region: PHA02517
198214005400	HTH-like domain; Region: HTH_21; pfam13276
198214005401	Integrase core domain; Region: rve; pfam00665
198214005402	Integrase core domain; Region: rve_3; pfam13683
198214005403	IS1 transposase; Region: DDE_Tnp_IS1; pfam03400
198214005404	core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; Region: SPFH_like; cl19107
198214005405	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
198214005406	ORF6N domain; Region: ORF6N; pfam10543
198214005407	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
198214005408	beta-clamp/clamp loader binding surface; other site
198214005409	Domain of unknown function (DUF4222); Region: DUF4222; pfam13973
198214005410	putative transposase OrfB; Reviewed; Region: PHA02517
198214005411	HTH-like domain; Region: HTH_21; pfam13276
198214005412	Integrase core domain; Region: rve; pfam00665
198214005413	Integrase core domain; Region: rve_3; pfam13683
198214005414	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005415	Transposase; Region: HTH_Tnp_1; cl17663
198214005416	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788175 (273 aa). BLAST with identity of 99% in 114 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005417	Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]; Region: COG3788
198214005418	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214005419	S-adenosylmethionine binding site [chemical binding]; other site
198214005420	tRNA (mo5U34)-methyltransferase; Region: TIGR00452
198214005421	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214005422	S-adenosylmethionine binding site [chemical binding]; other site
198214005423	Tat (twin-arginine translocation) pathway signal sequence; Region: TAT_signal_seq; TIGR01409
198214005424	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_DMSOR-BSOR-TMAOR; cd02769
198214005425	molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509
198214005426	molybdopterin cofactor binding site [chemical binding]; other site
198214005427	substrate binding site [chemical binding]; other site
198214005428	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_CT_DMSOR-BSOR-TMAOR; cd02793
198214005429	molybdopterin cofactor binding site; other site
198214005430	NapC/NirT cytochrome c family, N-terminal region; Region: Cytochrom_NNT; pfam03264
198214005431	trimethylamine-N-oxide reductase c-type cytochrome TorC; Region: torC; TIGR02162
198214005432	copper homeostasis protein CutC; Provisional; Region: PRK11572
198214005433	This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases; Region: Glo_EDI_BRP_like_4; cd07268
198214005434	putative metal binding site [ion binding]; other site
198214005435	Arginyl tRNA synthetase N terminal dom; Region: Arg_tRNA_synt_N; smart01016
198214005436	arginyl-tRNA synthetase; Region: argS; TIGR00456
198214005437	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
198214005438	active site
198214005439	HIGH motif; other site
198214005440	KMSK motif region; other site
198214005441	Anticodon-binding domain of arginyl tRNA synthetases; Region: Anticodon_Ia_Arg; cd07956
198214005442	tRNA binding surface [nucleotide binding]; other site
198214005443	anticodon binding site; other site
198214005444	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3755
198214005445	Transposase; Region: HTH_Tnp_1; cl17663
198214005446	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005447	Flagellar protein FlhE; Region: FlhE; pfam06366
198214005448	Similar to Escherichia coli K12 flagellar biosynthesis; possible export of flagellar proteins gi: 1788187 (693 aa). BLAST with identity of 99% in 691 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005449	flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK05702
198214005450	putative transposase OrfB; Reviewed; Region: PHA02517
198214005451	HTH-like domain; Region: HTH_21; pfam13276
198214005452	Integrase core domain; Region: rve; pfam00665
198214005453	Integrase core domain; Region: rve_3; pfam13683
198214005454	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005455	Transposase; Region: HTH_Tnp_1; cl17663
198214005456	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
198214005457	metal binding triad [ion binding]; metal-binding site
198214005458	putative transposase OrfB; Reviewed; Region: PHA02517
198214005459	HTH-like domain; Region: HTH_21; pfam13276
198214005460	Integrase core domain; Region: rve; pfam00665
198214005461	Integrase core domain; Region: rve_3; pfam13683
198214005462	chemotaxis regulator CheZ; Provisional; Region: PRK11166
198214005463	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214005464	active site
198214005465	phosphorylation site [posttranslational modification]
198214005466	intermolecular recognition site; other site
198214005467	dimerization interface [polypeptide binding]; other site
198214005468	chemotaxis-specific methylesterase; Provisional; Region: PRK00742
198214005469	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214005470	active site
198214005471	phosphorylation site [posttranslational modification]
198214005472	intermolecular recognition site; other site
198214005473	dimerization interface [polypeptide binding]; other site
198214005474	CheB methylesterase; Region: CheB_methylest; pfam01339
198214005475	chemotaxis methyltransferase CheR; Provisional; Region: PRK10611
198214005476	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
198214005477	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214005478	S-adenosylmethionine binding site [chemical binding]; other site
198214005479	methyl-accepting protein IV; Provisional; Region: PRK09793
198214005480	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
198214005481	dimer interface [polypeptide binding]; other site
198214005482	ligand binding site [chemical binding]; other site
198214005483	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214005484	dimerization interface [polypeptide binding]; other site
198214005485	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
198214005486	dimer interface [polypeptide binding]; other site
198214005487	putative CheW interface [polypeptide binding]; other site
198214005488	methyl-accepting chemotaxis protein II; Provisional; Region: PRK15048
198214005489	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
198214005490	dimer interface [polypeptide binding]; other site
198214005491	ligand binding site [chemical binding]; other site
198214005492	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214005493	dimerization interface [polypeptide binding]; other site
198214005494	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
198214005495	dimer interface [polypeptide binding]; other site
198214005496	putative CheW interface [polypeptide binding]; other site
198214005497	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
198214005498	putative CheA interaction surface; other site
198214005499	chemotaxis protein CheA; Provisional; Region: PRK10547
198214005500	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
198214005501	putative binding surface; other site
198214005502	active site
198214005503	CheY binding; Region: CheY-binding; pfam09078
198214005504	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
198214005505	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214005506	ATP binding site [chemical binding]; other site
198214005507	Mg2+ binding site [ion binding]; other site
198214005508	G-X-G motif; other site
198214005509	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
198214005510	flagellar motor protein MotB; Validated; Region: motB; PRK09041
198214005511	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
198214005512	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
198214005513	ligand binding site [chemical binding]; other site
198214005514	flagellar motor protein MotA; Validated; Region: PRK09110
198214005515	transcriptional activator FlhC; Provisional; Region: PRK12722
198214005516	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005517	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005518	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005519	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005520	Similar to Escherichia coli K12 trehalose-6-phosphate synthase gi: 1788206 (475 aa). BLAST with identity of 97% in 148 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005521	trehalose-6-phosphate phosphatase; Provisional; Region: PRK10187
198214005522	HAD-superfamily hydrolase, subfamily IIB; Region: HAD-SF-IIB; TIGR01484
198214005523	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214005524	TM-ABC transporter signature motif; other site
198214005525	L-arabinose transporter ATP-binding protein; Provisional; Region: araG; PRK11288
198214005526	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
198214005527	Walker A/P-loop; other site
198214005528	ATP binding site [chemical binding]; other site
198214005529	Q-loop/lid; other site
198214005530	ABC transporter signature motif; other site
198214005531	Walker B; other site
198214005532	D-loop; other site
198214005533	H-loop/switch region; other site
198214005534	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
198214005535	Similar to Escherichia coli K12 L-arabinose-binding periplasmic protein gi: 1788211 (330 aa). BLAST with identity of 97% in 329 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005536	nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055
198214005537	Ferritin-like domain; Region: Ferritin; pfam00210
198214005538	ferroxidase diiron center [ion binding]; other site
198214005539	Protein of unknown function (DUF2766); Region: DUF2766; pfam10964
198214005540	YecR-like lipoprotein; Region: YecR; pfam13992
198214005541	nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055
198214005542	Ferritin-like domain; Region: Ferritin; pfam00210
198214005543	ferroxidase diiron center [ion binding]; other site
198214005544	probable metal-binding protein; Region: matur_matur; TIGR03853
198214005545	tyrosine transporter TyrP; Provisional; Region: PRK15132
198214005546	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214005547	hypothetical protein; Provisional; Region: PRK10396
198214005548	yecA family protein; Region: ygfB_yecA; TIGR02292
198214005549	SEC-C motif; Region: SEC-C; cl19389
198214005550	phosphatidylglycerophosphate synthetase; Provisional; Region: PRK10832
198214005551	excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558
198214005552	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
198214005553	active site
198214005554	catalytic site [active]
198214005555	putative DNA binding site [nucleotide binding]; other site
198214005556	GIY-YIG motif/motif A; other site
198214005557	metal binding site [ion binding]; metal-binding site
198214005558	UvrB/uvrC motif; Region: UVR; pfam02151
198214005559	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
198214005560	Helix-hairpin-helix domain; Region: HHH_5; pfam14520
198214005561	response regulator; Provisional; Region: PRK09483
198214005562	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214005563	active site
198214005564	phosphorylation site [posttranslational modification]
198214005565	intermolecular recognition site; other site
198214005566	dimerization interface [polypeptide binding]; other site
198214005567	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214005568	DNA binding residues [nucleotide binding]
198214005569	dimerization interface [polypeptide binding]; other site
198214005570	hypothetical protein; Provisional; Region: PRK10613
198214005571	Autoinducer binding domain; Region: Autoind_bind; pfam03472
198214005572	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cl17315
198214005573	DNA binding residues [nucleotide binding]
198214005574	putative amino-acid ABC transporter ATP-binding protein YecC; Provisional; Region: PRK11264
198214005575	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
198214005576	Walker A/P-loop; other site
198214005577	ATP binding site [chemical binding]; other site
198214005578	Q-loop/lid; other site
198214005579	ABC transporter signature motif; other site
198214005580	Walker B; other site
198214005581	D-loop; other site
198214005582	H-loop/switch region; other site
198214005583	amino acid ABC transporter permease; Provisional; Region: PRK15100
198214005584	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214005585	dimer interface [polypeptide binding]; other site
198214005586	conserved gate region; other site
198214005587	putative PBP binding loops; other site
198214005588	ABC-ATPase subunit interface; other site
198214005589	Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia; Region: ACCD; cd06449
198214005590	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214005591	catalytic residue [active]
198214005592	cystine transporter subunit; Provisional; Region: PRK11260
198214005593	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214005594	substrate binding pocket [chemical binding]; other site
198214005595	membrane-bound complex binding site; other site
198214005596	hinge residues; other site
198214005597	flagella biosynthesis protein FliZ; Provisional; Region: PRK11582
198214005598	Similar to Escherichia coli K12 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons gi: 1788231 (240 aa). BLAST with identity of 98% in 239 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214005599	flagellin; Validated; Region: PRK08026
198214005600	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
198214005601	Flagellin protein; Region: FliC; pfam12445
198214005602	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
198214005603	flagellar capping protein; Reviewed; Region: fliD; PRK08032
198214005604	Flagellar hook-associated protein 2 N-terminus; Region: FliD_N; pfam02465
198214005605	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
198214005606	Flagellar protein FliS; Region: FliS; cl00654
198214005607	flagellar biosynthesis protein FliT; Provisional; Region: PRK10548
198214005608	cytoplasmic alpha-amylase; Reviewed; Region: PRK09441
198214005609	Alpha amylase catalytic domain found in bacterial and fungal Alpha amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); Region: AmyAc_bac_fung_AmyA; cd11318
198214005610	active site
198214005611	Na/Ca binding site [ion binding]; other site
198214005612	catalytic site [active]
198214005613	lipoprotein; Provisional; Region: PRK10397
198214005614	putative inner membrane protein; Provisional; Region: PRK11099
198214005615	Predicted transporter component [General function prediction only]; Region: COG2391
198214005616	YedF is a bacterial SirA-like protein of unknown function.  SirA  (also known as UvrY,  and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system...; Region: YedF; cd03422
198214005617	CPxP  motif; other site
198214005618	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788240 (218 aa). BLAST with identity of 94% in 218 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005619	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
198214005620	trimer interface [polypeptide binding]; other site
198214005621	eyelet of channel; other site
198214005622	transcriptional regulator HilD; Provisional; Region: PRK15185
198214005623	PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea; Region: PEBP_bact_arch; cd00865
198214005624	substrate binding site [chemical binding]; other site
198214005625	multidrug efflux protein; Reviewed; Region: emrE; PRK09541
198214005626	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788246 (93 aa). BLAST with identity of 94% in 76 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005627	flagellar hook-basal body complex protein FliE; Region: fliE; TIGR00205
198214005628	Similar to Escherichia coli K12 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein gi: 1788248 (553 aa). BLAST with identity of 96% in 553 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005629	flagellar motor switch protein FliG; Region: fliG; TIGR00207
198214005630	FliG N-terminal domain; Region: FliG_N; pfam14842
198214005631	FliG middle domain; Region: FliG_M; pfam14841
198214005632	FliG C-terminal domain; Region: FliG_C; pfam01706
198214005633	flagellar assembly protein H; Validated; Region: fliH; PRK05687
198214005634	Essential protein Yae1, N terminal; Region: Yae1_N; pfam09811
198214005635	Flagellar assembly protein FliH; Region: FliH; pfam02108
198214005636	flagellum-specific ATP synthase; Validated; Region: fliI; PRK07960
198214005637	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
198214005638	Walker A motif/ATP binding site; other site
198214005639	Walker B motif; other site
198214005640	flagellar biosynthesis chaperone; Validated; Region: fliJ; PRK05689
198214005641	flagellar hook-length control protein; Provisional; Region: PRK10118
198214005642	Flagellar hook-length control protein FliK; Region: Flg_hook; pfam02120
198214005643	flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK07021
198214005644	flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666
198214005645	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
198214005646	flagellar motor switch protein FliN; Validated; Region: fliN; PRK07963
198214005647	Flagellar biosynthesis protein, FliO; Region: FliO; cl01247
198214005648	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
198214005649	flagellar biosynthesis protein FliQ; Validated; Region: fliQ; PRK05700
198214005650	flagellar biosynthesis protein FliR; Reviewed; Region: fliR; PRK05701
198214005651	colanic acid capsular biosynthesis activation protein A; Provisional; Region: rcsA; PRK15411
198214005652	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214005653	DNA binding residues [nucleotide binding]
198214005654	dimerization interface [polypeptide binding]; other site
198214005655	hypothetical protein; Provisional; Region: PRK10708
198214005656	Protein of unknown function (DUF2525); Region: DUF2525; pfam10733
198214005657	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788265 (272 aa). BLAST with identity of 96% in 272 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005658	putative diguanylate cyclase YedQ; Provisional; Region: PRK15426
198214005659	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214005660	metal binding site [ion binding]; metal-binding site
198214005661	active site
198214005662	I-site; other site
198214005663	Uncharacterized small protein (DUF2158); Region: DUF2158; cl02293
198214005664	hypothetical protein; Provisional; Region: PRK10062
198214005665	putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272
198214005666	EamA-like transporter family; Region: EamA; pfam00892
198214005667	EamA-like transporter family; Region: EamA; pfam00892
198214005668	Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches; Region: Vsr; cd00221
198214005669	additional DNA contacts [nucleotide binding]; other site
198214005670	mismatch recognition site; other site
198214005671	active site
198214005672	zinc binding site [ion binding]; other site
198214005673	DNA intercalation site [nucleotide binding]; other site
198214005674	DNA cytosine methylase; Provisional; Region: PRK10458
198214005675	Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group...; Region: Cyt_C5_DNA_methylase; cd00315
198214005676	cofactor binding site; other site
198214005677	DNA binding site [nucleotide binding]
198214005678	substrate interaction site [chemical binding]; other site
198214005679	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788273 (232 aa). BLAST with identity of 96% in 180 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214005680	putative transposase OrfB; Reviewed; Region: PHA02517
198214005681	HTH-like domain; Region: HTH_21; pfam13276
198214005682	Integrase core domain; Region: rve; pfam00665
198214005683	Integrase core domain; Region: rve_2; pfam13333
198214005684	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005685	Transposase; Region: HTH_Tnp_1; pfam01527
198214005686	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
198214005687	eyelet of channel; other site
198214005688	trimer interface [polypeptide binding]; other site
198214005689	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214005690	HTH-like domain; Region: HTH_21; pfam13276
198214005691	Integrase core domain; Region: rve; pfam00665
198214005692	Integrase core domain; Region: rve_3; pfam13683
198214005693	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214005694	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005695	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005696	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005697	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005698	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005699	chaperone protein HchA; Provisional; Region: PRK04155
198214005700	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
198214005701	conserved cys residue [active]
198214005702	heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386
198214005703	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214005704	dimer interface [polypeptide binding]; other site
198214005705	phosphorylation site [posttranslational modification]
198214005706	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214005707	ATP binding site [chemical binding]; other site
198214005708	Mg2+ binding site [ion binding]; other site
198214005709	G-X-G motif; other site
198214005710	transcriptional regulatory protein YedW; Provisional; Region: PRK11517
198214005711	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214005712	active site
198214005713	phosphorylation site [posttranslational modification]
198214005714	intermolecular recognition site; other site
198214005715	dimerization interface [polypeptide binding]; other site
198214005716	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214005717	DNA binding site [nucleotide binding]
198214005718	HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU); Region: TLP_HIUase; cd05822
198214005719	active site
198214005720	homotetramer interface [polypeptide binding]; other site
198214005721	Similar to Escherichia coli K12  reductase  gi: 1788282 (335 aa). BLAST with identity of 97% in 335 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005722	putative sulfite oxidase subunit YedZ; Reviewed; Region: PRK05419
198214005723	zinc/cadmium-binding protein; Provisional; Region: PRK10306
198214005724	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
198214005725	Methyltransferase domain; Region: Methyltransf_31; pfam13847
198214005726	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214005727	S-adenosylmethionine binding site [chemical binding]; other site
198214005728	ipaH island IV
198214005729	Similar to Shigella flexneri IpaH9.8  gb: AAC23714.1 (545 aa). BLAST with identity of 77% in 994 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214005730	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214005731	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214005732	putative transposase OrfB; Reviewed; Region: PHA02517
198214005733	HTH-like domain; Region: HTH_21; pfam13276
198214005734	Integrase core domain; Region: rve; pfam00665
198214005735	Integrase core domain; Region: rve_3; pfam13683
198214005736	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005737	phage tail tape measure protein, TP901 family, core region; Region: tape_meas_TP901; TIGR01760
198214005738	Mu-like prophage FluMu protein gp41; Region: FluMu_gp41; pfam10109
198214005739	Phage tail tube protein; Region: Tail_tube; pfam10618
198214005740	Mu-like prophage tail sheath protein gpL [General function prediction only]; Region: COG4386
198214005741	Phage tail sheath protein; Region: Phage_sheath_1; pfam04984
198214005742	putative transposase OrfB; Reviewed; Region: PHA02517
198214005743	HTH-like domain; Region: HTH_21; pfam13276
198214005744	Integrase core domain; Region: rve; pfam00665
198214005745	Integrase core domain; Region: rve_3; pfam13683
198214005746	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005747	Transposase; Region: HTH_Tnp_1; pfam01527
198214005748	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214005749	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214005750	Homeodomain-like domain; Region: HTH_23; pfam13384
198214005751	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005752	Transposase; Region: HTH_Tnp_1; pfam01527
198214005753	Lysis protein S; Region: Lysis_S; pfam04971
198214005754	Phage antitermination protein Q; Region: Phage_antiter_Q; pfam06323
198214005755	Holliday junction resolvase [DNA replication, recombination, and repair]; Region: Rus; COG4570
198214005756	Protein of unknown function (DUF968); Region: DUF968; pfam06147
198214005757	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
198214005758	active site
198214005759	Hok/gef family; Region: HOK_GEF; pfam01848
198214005760	DgsA anti-repressor MtfA; Provisional; Region: PRK15410
198214005761	putative transposase OrfB; Reviewed; Region: PHA02517
198214005762	HTH-like domain; Region: HTH_21; pfam13276
198214005763	Integrase core domain; Region: rve; pfam00665
198214005764	Integrase core domain; Region: rve_3; pfam13683
198214005765	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005766	Transposase; Region: HTH_Tnp_1; cl17663
198214005767	'Similar to Escherichia coli K12  transport protein, shikimate gi: 1788292 (439 aa). BLAST with identity of 97% in 643 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
198214005768	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005769	Transposase; Region: HTH_Tnp_1; pfam01527
198214005770	putative transposase OrfB; Reviewed; Region: PHA02517
198214005771	HTH-like domain; Region: HTH_21; pfam13276
198214005772	Integrase core domain; Region: rve; pfam00665
198214005773	Integrase core domain; Region: rve_3; pfam13683
198214005774	AMP nucleosidase; Provisional; Region: PRK08292
198214005775	Bacterial AMP nucleoside phosphorylase N-terminus; Region: AMNp_N; pfam10423
198214005776	Nucleoside phosphorylase [Nucleotide transport and metabolism]; Region: Pfs; COG0775
198214005777	hypothetical protein; Provisional; Region: PRK12378
198214005778	Similar to Escherichia coli K12 conserved hypothetical protein gi: 2367126 (548 aa). BLAST with identity of 98% in 542 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005779	transcriptional regulator Cbl; Reviewed; Region: cbl; PRK12679
198214005780	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214005781	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214005782	dimerization interface [polypeptide binding]; other site
198214005783	nitrogen assimilation transcriptional regulator; Provisional; Region: PRK11233
198214005784	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214005785	The C-teminal substrate binding domain of LysR-like nitrogen assimilation control (NAC) protein, contains the type 2 periplasmic binding fold; Region: PBP2_Nac; cd08433
198214005786	putative dimerization interface [polypeptide binding]; other site
198214005787	L,D-transpeptidase; Provisional; Region: PRK10190
198214005788	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
198214005789	Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT; Region: DMB-PRT_CobT; cd02439
198214005790	putative dimer interface [polypeptide binding]; other site
198214005791	active site pocket [active]
198214005792	putative cataytic base [active]
198214005793	cobalamin 5'-phosphate synthase/cobalamin synthase; Region: cobS; TIGR00317
198214005794	Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a...; Region: CobU; cd00544
198214005795	GTP binding site [chemical binding]; other site
198214005796	Walker B motif; other site
198214005797	homotrimer interface [polypeptide binding]; other site
198214005798	putative transposase OrfB; Reviewed; Region: PHA02517
198214005799	HTH-like domain; Region: HTH_21; pfam13276
198214005800	Integrase core domain; Region: rve; pfam00665
198214005801	Integrase core domain; Region: rve_3; pfam13683
198214005802	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005803	Transposase; Region: HTH_Tnp_1; pfam01527
198214005804	Transposase; Region: HTH_Tnp_1; cl17663
198214005805	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214005806	HTH-like domain; Region: HTH_21; pfam13276
198214005807	Integrase core domain; Region: rve; pfam00665
198214005808	Integrase core domain; Region: rve_3; pfam13683
198214005809	hypothetical protein; Provisional; Region: PRK05423
198214005810	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788318 (353 aa). BLAST with identity of 97% in 40 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005811	Integrase core domain; Region: rve; pfam00665
198214005812	Integrase core domain; Region: rve_3; pfam13683
198214005813	exonuclease I; Provisional; Region: sbcB; PRK11779
198214005814	N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins; Region: ExoI_N; cd06138
198214005815	active site
198214005816	catalytic site [active]
198214005817	substrate binding site [chemical binding]; other site
198214005818	Exonuclease C-terminal; Region: Exonuc_X-T_C; pfam08411
198214005819	SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain.  SirA (also known as UvrY,  and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this...; Region: SirA_YedF_YeeD; cd00291
198214005820	CPxP  motif; other site
198214005821	Predicted transporter component [General function prediction only]; Region: COG2391
198214005822	Sulphur transport; Region: Sulf_transp; cl19477
198214005823	Sulphur transport; Region: Sulf_transp; cl19477
198214005824	Amino acid transporters [Amino acid transport and metabolism]; Region: PotE; COG0531
198214005825	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214005826	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214005827	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074
198214005828	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214005829	dimerization interface [polypeptide binding]; other site
198214005830	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
198214005831	atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266
198214005832	putative NAD(P) binding site [chemical binding]; other site
198214005833	Plasmid encoded toxin Txe; Region: Plasmid_Txe; pfam06769
198214005834	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005835	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005836	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005837	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005838	antitoxin YefM; Provisional; Region: PRK11409
198214005839	ATP phosphoribosyltransferase; Reviewed; Region: hisG; PRK00489
198214005840	ATP phosphoribosyltransferase; Region: hisG; TIGR00070
198214005841	ATP phosphoribosyltransferase, C-terminal domain; Region: HisG_C-term; TIGR03455
198214005842	Histidinol dehydrogenase [Amino acid transport and metabolism]; Region: HisD; COG0141
198214005843	Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent...; Region: Histidinol_dh; cd06572
198214005844	NAD binding site [chemical binding]; other site
198214005845	dimerization interface [polypeptide binding]; other site
198214005846	product binding site; other site
198214005847	substrate binding site [chemical binding]; other site
198214005848	zinc binding site [ion binding]; other site
198214005849	catalytic residues [active]
198214005850	histidinol-phosphate aminotransferase; Region: hisC; TIGR01141
198214005851	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214005852	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214005853	homodimer interface [polypeptide binding]; other site
198214005854	catalytic residue [active]
198214005855	imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional; Region: PRK05446
198214005856	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214005857	active site
198214005858	motif I; other site
198214005859	motif II; other site
198214005860	Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914
198214005861	putative active site pocket [active]
198214005862	4-fold oligomerization interface [polypeptide binding]; other site
198214005863	metal binding residues [ion binding]; metal-binding site
198214005864	3-fold/trimer interface [polypeptide binding]; other site
198214005865	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13142
198214005866	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
198214005867	putative active site [active]
198214005868	oxyanion strand; other site
198214005869	catalytic triad [active]
198214005870	HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA; cd04732
198214005871	catalytic residues [active]
198214005872	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
198214005873	substrate binding site [chemical binding]; other site
198214005874	glutamase interaction surface [polypeptide binding]; other site
198214005875	Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]; Region: HisI; COG0139
198214005876	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed; Region: PRK02759
198214005877	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in Escherichia coli phosphoribosyl-ATP pyrophosphohydrolase (HisIE or PRATP-PH) and its homologs; Region: NTP-PPase_HisIE_like; cd11534
198214005878	metal binding site [ion binding]; metal-binding site
198214005879	chain length determinant protein WzzB; Provisional; Region: PRK15471
198214005880	Chain length determinant protein; Region: Wzz; pfam02706
198214005881	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
198214005882	Similar to Escherichia coli K12 UDP-glucose 6-dehydrogenase gi: 1788340 (389 aa). BLAST with identity of 96% in 373 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005883	NAD binding domain of 6-phosphogluconate dehydrogenase; Region: NAD_binding_2; pfam03446
198214005884	6-phosphogluconate dehydrogenase; Validated; Region: PRK09287
198214005885	6-phosphogluconate dehydrogenase, C-terminal domain; Region: 6PGD; pfam00393
198214005886	potential frameshift: common BLAST hit: gi|313200833|ref|YP_004039491.1| dolichyl-phosphate-mannose-protein mannosyltransferase
198214005887	GtrA-like protein; Region: GtrA; pfam04138
198214005888	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
198214005889	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
198214005890	active site
198214005891	RfbF is a putative dTDP-rhamnosyl transferase; Region: GT2_RfbF_like; cd02526
198214005892	L-rhamnosyltransferase; Region: rhamnosyltran; TIGR01556
198214005893	Ligand binding site; other site
198214005894	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
198214005895	Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_Wzx_like; cd13128
198214005896	dTDP-4-dehydrorhamnose 3,5-epimerase; Region: dTDP_sugar_isom; pfam00908
198214005897	G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538
198214005898	glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207
198214005899	substrate binding site; other site
198214005900	tetramer interface; other site
198214005901	dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs; Region: dTDP_HR_like_SDR_e; cd05254
198214005902	RmlD substrate binding domain; Region: RmlD_sub_bind; pfam04321
198214005903	NADP binding site [chemical binding]; other site
198214005904	active site
198214005905	putative substrate binding site [chemical binding]; other site
198214005906	dTDP-glucose 4,6 dehydratase; Provisional; Region: PRK10084
198214005907	dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246
198214005908	NAD binding site [chemical binding]; other site
198214005909	substrate binding site [chemical binding]; other site
198214005910	homodimer interface [polypeptide binding]; other site
198214005911	active site
198214005912	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
198214005913	active site
198214005914	tetramer interface; other site
198214005915	putative colanic acid biosynthesis protein; Provisional; Region: wcaM; PRK10123
198214005916	colanic acid biosynthesis glycosyltransferase WcaL; Region: wcaL; TIGR04005
198214005917	This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor; Region: GT1_amsK_like; cd03799
198214005918	putative ADP-binding pocket [chemical binding]; other site
198214005919	colanic acid biosynthesis pyruvyl transferase WcaK; Region: wcaK; TIGR04006
198214005920	colanic acid exporter; Provisional; Region: PRK10459
198214005921	Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; Region: MATE_tuaB_like; cd13127
198214005922	putative UDP-glucose lipid carrier transferase; Provisional; Region: PRK10124
198214005923	CoA-binding domain; Region: CoA_binding_3; pfam13727
198214005924	Bacterial sugar transferase; Region: Bac_transf; pfam02397
198214005925	phosphomannomutase CpsG; Provisional; Region: PRK15414
198214005926	The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a...; Region: PMM_PGM; cd03089
198214005927	active site
198214005928	substrate binding site [chemical binding]; other site
198214005929	metal binding site [ion binding]; metal-binding site
198214005930	mannose-1-phosphate guanyltransferase; Provisional; Region: cpsB; PRK15460
198214005931	GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509
198214005932	Substrate binding site; other site
198214005933	Mannose-6-phosphate isomerase; Region: MannoseP_isomer; pfam01050
198214005934	colanic acid biosynthesis glycosyl transferase WcaI; Region: wcaI; TIGR04007
198214005935	This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen.  It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase; Region: GT1_wbuB_like; cd03794
198214005936	GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix...; Region: GDPMH; cd03430
198214005937	active site
198214005938	GDP-Mannose binding site [chemical binding]; other site
198214005939	dimer interface [polypeptide binding]; other site
198214005940	modified nudix motif
198214005941	metal binding site [ion binding]; metal-binding site
198214005942	GDP-fucose synthetase, extended (e) SDRs; Region: GDP_FS_SDR_e; cd05239
198214005943	GDP-4-keto-6-deoxymannose-3, 5-epimerase-4-reductase; Region: PLN02725
198214005944	NADP binding site [chemical binding]; other site
198214005945	active site
198214005946	putative substrate binding site [chemical binding]; other site
198214005947	GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]; Region: Gmd; COG1089
198214005948	GDP-mannose 4,6 dehydratase, extended (e) SDRs; Region: GDP_MD_SDR_e; cd05260
198214005949	NADP-binding site; other site
198214005950	homotetramer interface [polypeptide binding]; other site
198214005951	substrate binding site [chemical binding]; other site
198214005952	homodimer interface [polypeptide binding]; other site
198214005953	active site
198214005954	colanic acid biosynthesis acetyltransferase WcaF; Region: WcaF; TIGR04008
198214005955	wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to...; Region: LbH_wcaF_like; cd05825
198214005956	putative trimer interface [polypeptide binding]; other site
198214005957	putative active site [active]
198214005958	putative substrate binding site [chemical binding]; other site
198214005959	putative CoA binding site [chemical binding]; other site
198214005960	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214005961	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214005962	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214005963	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214005964	Similar to Escherichia coli K12  colanic acid polymerase  ref: NP_416560.1 (405 aa). BLAST with identity of 96% in 324 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214005965	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
198214005966	colanic acid biosynthesis glycosyl transferase WcaC; Region: WcaC; TIGR04015
198214005967	putative acyl transferase; Provisional; Region: PRK10191
198214005968	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
198214005969	trimer interface [polypeptide binding]; other site
198214005970	active site
198214005971	substrate binding site [chemical binding]; other site
198214005972	CoA binding site [chemical binding]; other site
198214005973	Similar to Escherichia coli K12  regulator gi: 1788372 (280 aa). BLAST with identity of 96% in 279 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214005974	tyrosine kinase; Provisional; Region: PRK11519
198214005975	Chain length determinant protein; Region: Wzz; pfam02706
198214005976	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
198214005977	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
198214005978	Low molecular weight phosphatase family; Region: LMWPc; cd00115
198214005979	active site
198214005980	polysaccharide export protein Wza; Provisional; Region: PRK15078
198214005981	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
198214005982	SLBB domain; Region: SLBB; pfam10531
198214005983	SLBB domain; Region: SLBB; pfam10531
198214005984	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
198214005985	FOG: CBS domain [General function prediction only]; Region: COG0517
198214005986	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
198214005987	Transporter associated domain; Region: CorC_HlyC; smart01091
198214005988	putative assembly protein; Provisional; Region: PRK10833
198214005989	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
198214005990	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
198214005991	trimer interface [polypeptide binding]; other site
198214005992	active site
198214005993	Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway; Region: UMPK; cd02023
198214005994	ATP-binding site [chemical binding]; other site
198214005995	Sugar specificity; other site
198214005996	Pyrimidine base specificity; other site
198214005997	Similar to Escherichia coli K12  sensor-type protein gi: 1788381 (1106 aa). BLAST with identity of 97% in 1586 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214005998	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214005999	Y-family of DNA polymerases; Region: PolY; cl12025
198214006000	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214006001	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214006002	3-methyl-adenine DNA glycosylase II; Provisional; Region: PRK10308
198214006003	AlkA N-terminal domain; Region: AlkA_N; smart01009
198214006004	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
198214006005	minor groove reading motif; other site
198214006006	helix-hairpin-helix signature motif; other site
198214006007	substrate binding pocket [chemical binding]; other site
198214006008	active site
198214006009	Similar to Escherichia coli K12  heat shock protein gi: 1788384 (472 aa). BLAST with identity of 98% in 472 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006010	Protein phosphatase 2C; Region: PP2C_2; pfam13672
198214006011	VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subfamily; cd01464
198214006012	metal ion-dependent adhesion site (MIDAS); other site
198214006013	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214006014	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214006015	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214006016	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
198214006017	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214006018	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214006019	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945
198214006020	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788390 (1041 aa). BLAST with identity of 98% in 1041 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006021	multidrug efflux system subunit MdtC; Provisional; Region: PRK10614
198214006022	MMPL family; Region: MMPL; cl14618
198214006023	putative transporter; Provisional; Region: PRK10504
198214006024	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214006025	putative substrate translocation pore; other site
198214006026	signal transduction histidine-protein kinase BaeS; Provisional; Region: PRK10549
198214006027	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214006028	dimerization interface [polypeptide binding]; other site
198214006029	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214006030	dimer interface [polypeptide binding]; other site
198214006031	phosphorylation site [posttranslational modification]
198214006032	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214006033	ATP binding site [chemical binding]; other site
198214006034	Mg2+ binding site [ion binding]; other site
198214006035	G-X-G motif; other site
198214006036	DNA-binding transcriptional regulator BaeR; Provisional; Region: PRK10710
198214006037	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006038	active site
198214006039	phosphorylation site [posttranslational modification]
198214006040	intermolecular recognition site; other site
198214006041	dimerization interface [polypeptide binding]; other site
198214006042	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214006043	DNA binding site [nucleotide binding]
198214006044	Uncharacterized conserved protein [Function unknown]; Region: COG3422
198214006045	Domain of unknown function (DUF1508); Region: DUF1508; pfam07411
198214006046	putative protease; Provisional; Region: PRK15452
198214006047	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
198214006048	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788400 (89 aa). BLAST with identity of 94% in 49 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214006049	lipid kinase; Reviewed; Region: PRK13054
198214006050	Diacylglycerol kinase catalytic domain; Region: DAGK_cat; pfam00781
198214006051	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
198214006052	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
198214006053	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214006054	galactitol-1-phosphate dehydrogenase; Provisional; Region: PRK10309
198214006055	NAD(P)-dependent sugar dehydrogenases; Region: sugar_DH; cd08236
198214006056	putative NAD(P) binding site [chemical binding]; other site
198214006057	catalytic Zn binding site [ion binding]; other site
198214006058	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006059	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006060	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006061	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006062	PTS system, galactitol-specific IIC component; Region: EIIC-GAT; TIGR00827
198214006063	PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS).  In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a...; Region: PTS_IIB_galactitol; cd05566
198214006064	active site
198214006065	P-loop; other site
198214006066	phosphorylation site [posttranslational modification]
198214006067	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214006068	active site
198214006069	phosphorylation site [posttranslational modification]
198214006070	D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional; Region: PRK15052
198214006071	Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1; Region: TBP_aldolase_IIB; cd00947
198214006072	intersubunit interface [polypeptide binding]; other site
198214006073	active site
198214006074	zinc binding site [ion binding]; other site
198214006075	Na+ binding site [ion binding]; other site
198214006076	Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs); Region: DhnA; cd00958
198214006077	putative active site; other site
198214006078	catalytic residue [active]
198214006079	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788416 (335 aa). BLAST with identity of 97% in 335 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006080	YegV-like sugar kinase.  Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time; Region: YegV_kinase_like; cd01944
198214006081	substrate binding site [chemical binding]; other site
198214006082	ATP binding site [chemical binding]; other site
198214006083	Similar to Escherichia coli K12  transcriptional regulator gi: 1788418 (249 aa). BLAST with identity of 98% in 694 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214006084	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214006085	Lyzozyme M1 (1,4-beta-N-acetylmuramidase) [Cell envelope biogenesis, outer membrane]; Region: Acm; COG3757
198214006086	YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins; Region: GH25_YegX-like; cd06524
198214006087	active site
198214006088	4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of...; Region: HMPP_kinase; cd01169
198214006089	dimer interface [polypeptide binding]; other site
198214006090	substrate binding site [chemical binding]; other site
198214006091	ATP binding site [chemical binding]; other site
198214006092	4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine...; Region: THZ_kinase; cd01170
198214006093	substrate binding site [chemical binding]; other site
198214006094	multimerization interface [polypeptide binding]; other site
198214006095	ATP binding site [chemical binding]; other site
198214006096	Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156; Region: RcnR-FrmR-like_DUF156; cd10153
198214006097	putative metal binding site [ion binding]; other site
198214006098	putative homodimer interface [polypeptide binding]; other site
198214006099	putative homotetramer interface [polypeptide binding]; other site
198214006100	putative homodimer-homodimer interface [polypeptide binding]; other site
198214006101	putative allosteric switch controlling residues; other site
198214006102	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788423 (275 aa). BLAST with identity of 98% in 277 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006103	Predicted integral membrane protein [Function unknown]; Region: COG5455
198214006104	Fimbrial protein; Region: Fimbrial; cl01416
198214006105	fimbrial outer membrane usher protein; Provisional; Region: PRK15217
198214006106	PapC N-terminal domain; Region: PapC_N; pfam13954
198214006107	Outer membrane usher protein; Region: Usher; pfam00577
198214006108	PapC C-terminal domain; Region: PapC_C; pfam13953
198214006109	Similar to Escherichia coli K12  chaperone gi: 1788428 (240 aa). BLAST with identity of 97% in 498 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214006110	IS1 transposase; Region: DDE_Tnp_IS1; pfam03400
198214006111	Fimbrial protein; Region: Fimbrial; cl01416
198214006112	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006113	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006114	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006115	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006116	Protein of unknown function (DUF2574); Region: DUF2574; pfam10836
198214006117	antiporter inner membrane protein; Provisional; Region: PRK11670
198214006118	MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037
198214006119	Walker A motif; other site
198214006120	methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133
198214006121	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
198214006122	active site
198214006123	HIGH motif; other site
198214006124	KMSKS motif; other site
198214006125	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
198214006126	tRNA binding surface [nucleotide binding]; other site
198214006127	anticodon binding site; other site
198214006128	tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins.  This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties.  MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800
198214006129	dimer interface [polypeptide binding]; other site
198214006130	putative tRNA-binding site [nucleotide binding]; other site
198214006131	'Similar to Escherichia coli K12 molybdate metabolism regulator, first fragment gi: 1788433 (275 aa). BLAST with identity of 98% in 956 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
198214006132	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214006133	Transposase; Region: HTH_Tnp_1; pfam01527
198214006134	putative transposase OrfB; Reviewed; Region: PHA02517
198214006135	HTH-like domain; Region: HTH_21; pfam13276
198214006136	Integrase core domain; Region: rve; pfam00665
198214006137	Integrase core domain; Region: rve_3; pfam13683
198214006138	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006139	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006140	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006141	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006142	'Similar to Escherichia coli K12 molybdate metabolism regulator, second fragment 2 gi: 1788434 (646 aa). BLAST with identity of 96% in 648 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214006143	Similar to Escherichia coli K12  regulator  ref: NP_416621.1 (1210 aa). BLAST with identity of 81% in 1215 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006144	MoxR-like ATPases [General function prediction only]; Region: COG0714
198214006145	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214006146	Walker A motif; other site
198214006147	ATP binding site [chemical binding]; other site
198214006148	Walker B motif; other site
198214006149	arginine finger; other site
198214006150	VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: VWA_YIEM_type; cd01462
198214006151	metal ion-dependent adhesion site (MIDAS); other site
198214006152	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006153	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4808
198214006154	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006155	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006156	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006157	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006158	Protein of unknown function (DUF1456); Region: DUF1456; pfam07308
198214006159	Protein of unknown function (DUF1456); Region: DUF1456; pfam07308
198214006160	putative two-component response-regulatory protein YehT; Provisional; Region: PRK11697
198214006161	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006162	active site
198214006163	phosphorylation site [posttranslational modification]
198214006164	intermolecular recognition site; other site
198214006165	dimerization interface [polypeptide binding]; other site
198214006166	LytTr DNA-binding domain; Region: LytTR; pfam04397
198214006167	Putative regulator of cell autolysis [Signal transduction mechanisms]; Region: LytS; COG3275
198214006168	5TMR of 5TMR-LYT; Region: 5TM-5TMR_LYT; pfam07694
198214006169	GAF domain; Region: GAF; pfam01590
198214006170	Histidine kinase; Region: His_kinase; pfam06580
198214006171	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214006172	ATP binding site [chemical binding]; other site
198214006173	Mg2+ binding site [ion binding]; other site
198214006174	G-X-G motif; other site
198214006175	Similar to Shigella flexneri conserved hypothetical protein ref: NP_085397.1 (448 aa). BLAST with identity of 77% in 448 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006176	DinI-like family; Region: DinI; pfam06183
198214006177	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
198214006178	Methyltransferase domain; Region: Methyltransf_31; pfam13847
198214006179	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214006180	S-adenosylmethionine binding site [chemical binding]; other site
198214006181	Similar to Shigella flexneri IpaH9.8  gb: AAC23714.1 (545 aa). BLAST with identity of 77% in 994 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214006182	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214006183	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214006184	Prophage tail fibre N-terminal; Region: phage_tail_N; pfam08400
198214006185	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
198214006186	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006187	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006188	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006189	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006190	Similar to Escherichia coli K12  transcriptional regulator gi: 1788448 (244 aa). BLAST with identity of 98% in 666 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214006191	Transposase; Region: HTH_Tnp_1; cl17663
198214006192	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214006193	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]; Region: TauC; COG0600
198214006194	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cl00462
198214006195	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214006196	dimer interface [polypeptide binding]; other site
198214006197	conserved gate region; other site
198214006198	putative PBP binding loops; other site
198214006199	ABC-ATPase subunit interface; other site
198214006200	ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]; Region: OpuBA; COG1125
198214006201	ATP-binding cassette domain of the osmoprotectant transporter; Region: ABC_OpuCA_Osmoprotection; cd03295
198214006202	Walker A/P-loop; other site
198214006203	ATP binding site [chemical binding]; other site
198214006204	Q-loop/lid; other site
198214006205	ABC transporter signature motif; other site
198214006206	Walker B; other site
198214006207	D-loop; other site
198214006208	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cd02205
198214006209	H-loop/switch region; other site
198214006210	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214006211	dimer interface [polypeptide binding]; other site
198214006212	conserved gate region; other site
198214006213	putative PBP binding loops; other site
198214006214	ABC-ATPase subunit interface; other site
198214006215	Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; Region: OpuBC; COG1732
198214006216	beta-D-glucoside glucohydrolase; Provisional; Region: PRK15098
198214006217	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
198214006218	Glycosyl hydrolase family 3 C-terminal domain; Region: Glyco_hydro_3_C; pfam01915
198214006219	Fibronectin type III-like domain; Region: Fn3-like; pfam14310
198214006220	D-lactate dehydrogenase; Provisional; Region: PRK11183
198214006221	FAD binding domain; Region: FAD_binding_4; cl19922
198214006222	D-lactate dehydrogenase, membrane binding; Region: Lact-deh-memb; pfam09330
198214006223	D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]; Region: DacC; COG1686
198214006224	D-alanyl-D-alanine endopeptidase; Provisional; Region: pbpG; PRK11669
198214006225	Protein of unknown function (DUF1282); Region: DUF1282; pfam06930
198214006226	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
198214006227	Similar to Escherichia coli K12  oxidoreductase gi: 1788459 (254 aa). BLAST with identity of 95% in 253 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006228	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
198214006229	Dihydrouridine synthase (Dus); Region: Dus; pfam01207
198214006230	FMN binding site [chemical binding]; other site
198214006231	active site
198214006232	catalytic residues [active]
198214006233	substrate binding site [chemical binding]; other site
198214006234	hypothetical protein; Provisional; Region: PRK01821
198214006235	hypothetical protein; Provisional; Region: PRK10711
198214006236	cytidine deaminase; Provisional; Region: PRK09027
198214006237	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
198214006238	active site
198214006239	catalytic motif [active]
198214006240	Zn binding site [ion binding]; other site
198214006241	Cytidine and deoxycytidylate deaminase zinc-binding region; Region: dCMP_cyt_deam_2; pfam08211
198214006242	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
198214006243	active site
198214006244	catalytic motif [active]
198214006245	Zn binding site [ion binding]; other site
198214006246	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
198214006247	putative active site [active]
198214006248	Protein of unknown function (DUF2542); Region: DUF2542; pfam10808
198214006249	dihydropyrimidine dehydrogenase subunit A; Provisional; Region: PRK11749
198214006250	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Region: Fer4_20; pfam14691
198214006251	Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; Region: FDH_GDH_like; cl17240
198214006252	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
198214006253	NAD binding site [chemical binding]; other site
198214006254	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214006255	Similar to Escherichia coli K12  oxidoreductase gi: 1788469 (414 aa). BLAST with identity of 98% in 395 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006256	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214006257	TM-ABC transporter signature motif; other site
198214006258	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
198214006259	galactose/methyl galaxtoside transporter ATP-binding protein; Provisional; Region: PRK10982
198214006260	Walker A/P-loop; other site
198214006261	ATP binding site [chemical binding]; other site
198214006262	Q-loop/lid; other site
198214006263	ABC transporter signature motif; other site
198214006264	Walker B; other site
198214006265	D-loop; other site
198214006266	H-loop/switch region; other site
198214006267	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
198214006268	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
198214006269	Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species; Region: PBP1_GGBP; cd01539
198214006270	ligand binding site [chemical binding]; other site
198214006271	calcium binding site [ion binding]; other site
198214006272	DNA-binding transcriptional regulator GalS; Provisional; Region: PRK10401
198214006273	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214006274	DNA binding site [nucleotide binding]
198214006275	domain linker motif; other site
198214006276	Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS_like; cd06270
198214006277	dimerization interface (closed form) [polypeptide binding]; other site
198214006278	ligand binding site [chemical binding]; other site
198214006279	Predicted membrane protein [Function unknown]; Region: COG2311
198214006280	hypothetical protein; Provisional; Region: PRK10835
198214006281	GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate.  The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria.  In...; Region: GTP_cyclohydro1; cd00642
198214006282	homodecamer interface [polypeptide binding]; other site
198214006283	active site
198214006284	putative catalytic site residues [active]
198214006285	zinc binding site [ion binding]; other site
198214006286	GTP-CH-I/GFRP interaction surface; other site
198214006287	Similar to Escherichia coli K12  esterase gi: 1788477 (279 aa). BLAST with identity of 98% in 280 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214006288	Similar to Escherichia coli K12 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product gi: 1788478 (664 aa). BLAST with identity of 99% in 663 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006289	lysine transporter; Provisional; Region: PRK10836
198214006290	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214006291	putative DNA-binding transcriptional regulator; Provisional; Region: PRK10837
198214006292	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214006293	C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold; Region: PBP2_CysL_like; cd08420
198214006294	putative dimerization interface [polypeptide binding]; other site
198214006295	conserved hypothetical integral membrane protein; Region: TIGR00698
198214006296	Endonuclease IV [DNA replication, recombination, and repair]; Region: Nfo; COG0648
198214006297	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
198214006298	AP (apurinic/apyrimidinic) site pocket; other site
198214006299	DNA interaction; other site
198214006300	Metal-binding active site; metal-binding site
198214006301	putative kinase; Provisional; Region: PRK09954
198214006302	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
198214006303	YeiC-like sugar kinase.  Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time; Region: YeiC_kinase_like; cd01941
198214006304	substrate binding site [chemical binding]; other site
198214006305	ATP binding site [chemical binding]; other site
198214006306	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
198214006307	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
198214006308	Nucleoside recognition; Region: Gate; pfam07670
198214006309	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
198214006310	nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the...; Region: nuc_hydro_IU_UC_XIUA; cd02651
198214006311	active site
198214006312	tetramer interface [polypeptide binding]; other site
198214006313	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
198214006314	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
198214006315	ligand binding site [chemical binding]; other site
198214006316	flexible hinge region; other site
198214006317	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
198214006318	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
198214006319	Nucleoside recognition; Region: Gate; pfam07670
198214006320	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
198214006321	Indigoidine synthase A like protein; Region: Indigoidine_A; pfam04227
198214006322	YeiC-like sugar kinase.  Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time; Region: YeiC_kinase_like; cd01941
198214006323	substrate binding site [chemical binding]; other site
198214006324	ATP binding site [chemical binding]; other site
198214006325	PTS system fructose-specific transporter subunits IIBC; Provisional; Region: PRK10712
198214006326	N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]; Region: COG3925
198214006327	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
198214006328	active site
198214006329	P-loop; other site
198214006330	phosphorylation site [posttranslational modification]
198214006331	PTS system, fructose subfamily, IIC component; Region: PTS_IIC_fructo; TIGR01427
198214006332	1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose...; Region: FruK_PfkB_like; cd01164
198214006333	putative substrate binding site [chemical binding]; other site
198214006334	putative ATP binding site [chemical binding]; other site
198214006335	bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; Provisional; Region: PRK11109
198214006336	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214006337	active site
198214006338	phosphorylation site [posttranslational modification]
198214006339	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
198214006340	dimerization domain swap beta strand [polypeptide binding]; other site
198214006341	regulatory protein interface [polypeptide binding]; other site
198214006342	active site
198214006343	regulatory phosphorylation site [posttranslational modification]; other site
198214006344	sugar efflux transporter B; Provisional; Region: PRK15011
198214006345	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214006346	putative substrate translocation pore; other site
198214006347	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006348	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006349	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006350	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006351	elongation factor P; Provisional; Region: PRK04542
198214006352	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
198214006353	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
198214006354	RNA binding site [nucleotide binding]; other site
198214006355	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
198214006356	RNA binding site [nucleotide binding]; other site
198214006357	Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246
198214006358	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
198214006359	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
198214006360	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
198214006361	CobW/HypB/UreG, nucleotide-binding domain; Region: cobW; pfam02492
198214006362	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; smart00833
198214006363	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
198214006364	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cd01610
198214006365	active site
198214006366	outer membrane lipoprotein; Provisional; Region: spr; PRK10838
198214006367	NlpC/P60 family; Region: NLPC_P60; pfam00877
198214006368	phage resistance protein; Provisional; Region: PRK10551
198214006369	CSS motif domain associated with EAL; Region: CSS-motif; pfam12792
198214006370	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214006371	ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166
198214006372	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_14; cd08497
198214006373	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4174
198214006374	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214006375	dimer interface [polypeptide binding]; other site
198214006376	conserved gate region; other site
198214006377	putative PBP binding loops; other site
198214006378	ABC-ATPase subunit interface; other site
198214006379	microcin C ABC transporter permease; Provisional; Region: PRK15021
198214006380	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214006381	dimer interface [polypeptide binding]; other site
198214006382	conserved gate region; other site
198214006383	putative PBP binding loops; other site
198214006384	ABC-ATPase subunit interface; other site
198214006385	microcin C ABC transporter ATP-binding protein YejF; Provisional; Region: PRK15134
198214006386	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214006387	Walker A/P-loop; other site
198214006388	ATP binding site [chemical binding]; other site
198214006389	Q-loop/lid; other site
198214006390	ABC transporter signature motif; other site
198214006391	Walker B; other site
198214006392	D-loop; other site
198214006393	H-loop/switch region; other site
198214006394	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214006395	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214006396	Walker A/P-loop; other site
198214006397	ATP binding site [chemical binding]; other site
198214006398	Q-loop/lid; other site
198214006399	ABC transporter signature motif; other site
198214006400	Walker B; other site
198214006401	D-loop; other site
198214006402	H-loop/switch region; other site
198214006403	hypothetical protein; Provisional; Region: PRK11835
198214006404	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214006405	bicyclomycin/multidrug efflux system; Provisional; Region: PRK11102
198214006406	putative substrate translocation pore; other site
198214006407	16S rRNA pseudouridylate synthase A; Provisional; Region: PRK10839
198214006408	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214006409	RNA binding surface [nucleotide binding]; other site
198214006410	Pseudouridine synthase, Escherichia coli RsuA like; Region: PseudoU_synth_RsuA; cd02553
198214006411	active site
198214006412	uracil binding [chemical binding]; other site
198214006413	DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]; Region: SSL2; COG1061
198214006414	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214006415	ATP binding site [chemical binding]; other site
198214006416	putative Mg++ binding site [ion binding]; other site
198214006417	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214006418	nucleotide binding region [chemical binding]; other site
198214006419	ATP-binding site [chemical binding]; other site
198214006420	Ribosomal L40e family; Region: Ribosomal_L40e; cl00671
198214006421	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
198214006422	5S rRNA interface [nucleotide binding]; other site
198214006423	CTC domain interface [polypeptide binding]; other site
198214006424	L16 interface [polypeptide binding]; other site
198214006425	nucleoid-associated protein NdpA; Validated; Region: PRK00378
198214006426	hypothetical protein; Provisional; Region: PRK13689
198214006427	Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]; Region: COG3083
198214006428	Domain of unknown function (DUF3413); Region: DUF3413; pfam11893
198214006429	Sulfatase; Region: Sulfatase; pfam00884
198214006430	Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: AidA; COG3468
198214006431	hypothetical protein; Provisional; Region: PRK09945
198214006432	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
198214006433	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214006434	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214006435	transcriptional regulator NarP; Provisional; Region: PRK10403
198214006436	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006437	active site
198214006438	phosphorylation site [posttranslational modification]
198214006439	intermolecular recognition site; other site
198214006440	dimerization interface [polypeptide binding]; other site
198214006441	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214006442	DNA binding residues [nucleotide binding]
198214006443	dimerization interface [polypeptide binding]; other site
198214006444	Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]; Region: CcmH; COG3088
198214006445	formate-dependent nitrite reductase complex subunit NrfG; Provisional; Region: PRK10370
198214006446	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
198214006447	binding surface
198214006448	TPR motif; other site
198214006449	TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c...; Region: TlpA_like_DsbE; cd03010
198214006450	catalytic residues [active]
198214006451	central insert; other site
198214006452	c-type cytochrome biogenesis protein CcmF; Region: nrfE; TIGR00353
198214006453	cytochrome c-type biogenesis protein CcmE; Reviewed; Region: PRK13150
198214006454	Heme exporter protein D [Intracellular trafficking and secretion]; Region: CcmD; COG3114
198214006455	heme exporter protein CcmC; Region: ccmC; TIGR01191
198214006456	heme exporter protein CcmB; Region: ccmB; TIGR01190
198214006457	cytochrome c biogenesis protein CcmA; Provisional; Region: PRK13538
198214006458	Cytochrome c biogenesis ATP-binding export protein; Region: ABC_CcmA_heme_exporter; cd03231
198214006459	Walker A/P-loop; other site
198214006460	ATP binding site [chemical binding]; other site
198214006461	Q-loop/lid; other site
198214006462	ABC transporter signature motif; other site
198214006463	Walker B; other site
198214006464	D-loop; other site
198214006465	H-loop/switch region; other site
198214006466	cytochrome c-type protein NapC; Provisional; Region: PRK10617
198214006467	cytochrome c nitrate reductase, small subunit; Region: cytochr_NrfH; TIGR03153
198214006468	nitrate reductase cytochrome C550 subunit; Provisional; Region: napB; PRK11586
198214006469	quinol dehydrogenase membrane component; Provisional; Region: napH; PRK09477
198214006470	4Fe-4S binding domain; Region: Fer4_5; pfam12801
198214006471	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214006472	quinol dehydrogenase periplasmic component; Provisional; Region: napG; PRK09476
198214006473	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214006474	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214006475	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214006476	nitrate reductase catalytic subunit; Provisional; Region: PRK13532
198214006477	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_Nitrate-R-NapA-like; cd02754
198214006478	[4Fe-4S] binding site [ion binding]; other site
198214006479	molybdopterin cofactor binding site; other site
198214006480	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_CT_Nitrate-R-NapA-like; cd02791
198214006481	molybdopterin cofactor binding site; other site
198214006482	assembly protein for periplasmic nitrate reductase; Provisional; Region: PRK10553
198214006483	ferredoxin-type protein; Provisional; Region: PRK10194
198214006484	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214006485	Protease Inhibitor Ecotin; homodimeric protease inhibitor; Region: Ecotin; cd00242
198214006486	secondary substrate binding site; other site
198214006487	primary substrate binding site; other site
198214006488	inhibition loop; other site
198214006489	dimerization interface [polypeptide binding]; other site
198214006490	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788539 (549 aa). BLAST with identity of 97% in 541 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006491	multidrug transporter membrane component/ATP-binding component; Provisional; Region: PRK10522
198214006492	ATP-binding cassette domain of multidrug resistance protein-like transporters; Region: ABCC_MRP_Like; cd03228
198214006493	Walker A/P-loop; other site
198214006494	ATP binding site [chemical binding]; other site
198214006495	Q-loop/lid; other site
198214006496	ABC transporter signature motif; other site
198214006497	Walker B; other site
198214006498	D-loop; other site
198214006499	H-loop/switch region; other site
198214006500	alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional; Region: PRK15401
198214006501	bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; Provisional; Region: PRK15435
198214006502	Metal binding domain of Ada; Region: Ada_Zn_binding; pfam02805
198214006503	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214006504	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214006505	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; Region: Methyltransf_1N; pfam02870
198214006506	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
198214006507	DNA binding site [nucleotide binding]
198214006508	active site
198214006509	thiamine biosynthesis lipoprotein ApbE; Provisional; Region: PRK10461
198214006510	outer membrane porin protein C; Provisional; Region: PRK10554
198214006511	phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional; Region: PRK10618
198214006512	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214006513	ATP binding site [chemical binding]; other site
198214006514	Mg2+ binding site [ion binding]; other site
198214006515	G-X-G motif; other site
198214006516	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
198214006517	putative binding surface; other site
198214006518	active site
198214006519	transcriptional regulator RcsB; Provisional; Region: PRK10840
198214006520	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006521	active site
198214006522	phosphorylation site [posttranslational modification]
198214006523	intermolecular recognition site; other site
198214006524	dimerization interface [polypeptide binding]; other site
198214006525	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214006526	DNA binding residues [nucleotide binding]
198214006527	dimerization interface [polypeptide binding]; other site
198214006528	hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional; Region: PRK10841
198214006529	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214006530	dimer interface [polypeptide binding]; other site
198214006531	phosphorylation site [posttranslational modification]
198214006532	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214006533	ATP binding site [chemical binding]; other site
198214006534	Mg2+ binding site [ion binding]; other site
198214006535	G-X-G motif; other site
198214006536	RcsC Alpha-Beta-Loop (ABL); Region: RcsC; pfam09456
198214006537	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006538	active site
198214006539	phosphorylation site [posttranslational modification]
198214006540	intermolecular recognition site; other site
198214006541	dimerization interface [polypeptide binding]; other site
198214006542	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4676
198214006543	Predicted secreted protein [Function unknown]; Region: COG5445
198214006544	Predicted secreted protein (DUF2300); Region: DUF2300; pfam10062
198214006545	Predicted secreted protein [Function unknown]; Region: COG5445
198214006546	Stage II sporulation protein; Region: SpoIID; pfam08486
198214006547	Predicted secreted protein (DUF2300); Region: DUF2300; pfam10062
198214006548	Similar to Escherichia coli K12  membrane protein gi: 1788559 (1338 aa). BLAST with identity of 98% in 1755 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214006549	putative transposase OrfB; Reviewed; Region: PHA02517
198214006550	HTH-like domain; Region: HTH_21; pfam13276
198214006551	Integrase core domain; Region: rve; pfam00665
198214006552	Integrase core domain; Region: rve_3; pfam13683
198214006553	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214006554	Transposase; Region: HTH_Tnp_1; cl17663
198214006555	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3234
198214006556	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788561 (579 aa). BLAST with identity of 98% in 578 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006557	DNA gyrase subunit A; Validated; Region: PRK05560
198214006558	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
198214006559	CAP-like domain; other site
198214006560	active site
198214006561	primary dimer interface [polypeptide binding]; other site
198214006562	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214006563	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214006564	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214006565	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214006566	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214006567	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214006568	bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional; Region: PRK05134
198214006569	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214006570	S-adenosylmethionine binding site [chemical binding]; other site
198214006571	Similar to Escherichia coli K12  ATP-binding component of a transport system gi: 1788565 (1251 aa). BLAST with identity of 96% in 1688 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214006572	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214006573	HTH-like domain; Region: HTH_21; pfam13276
198214006574	Integrase core domain; Region: rve; pfam00665
198214006575	Integrase core domain; Region: rve_3; pfam13683
198214006576	ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK09103
198214006577	ATP cone domain; Region: ATP-cone; pfam03477
198214006578	Class I ribonucleotide reductase; Region: RNR_I; cd01679
198214006579	active site
198214006580	dimer interface [polypeptide binding]; other site
198214006581	catalytic residues [active]
198214006582	effector binding site; other site
198214006583	R2 peptide binding site; other site
198214006584	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
198214006585	dimer interface [polypeptide binding]; other site
198214006586	putative radical transfer pathway; other site
198214006587	diiron center [ion binding]; other site
198214006588	tyrosyl radical; other site
198214006589	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214006590	catalytic loop [active]
198214006591	iron binding site [ion binding]; other site
198214006592	hypothetical protein; Provisional; Region: PRK09902
198214006593	hypothetical protein; Provisional; Region: PRK09729
198214006594	glycerophosphodiester phosphodiesterase; Provisional; Region: glpQ; PRK11143
198214006595	Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins; Region: GDPD_EcGlpQ_like; cd08600
198214006596	active site
198214006597	catalytic site [active]
198214006598	metal binding site [ion binding]; metal-binding site
198214006599	sn-glycerol-3-phosphate transporter; Provisional; Region: glpT; PRK11273
198214006600	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214006601	putative substrate translocation pore; other site
198214006602	sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional; Region: glpA; PRK11101
198214006603	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214006604	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; COG3075
198214006605	FAD binding domain; Region: FAD_binding_2; pfam00890
198214006606	glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; Region: glycerol3P_GlpC; TIGR03379
198214006607	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
198214006608	Cysteine-rich domain; Region: CCG; pfam02754
198214006609	Cysteine-rich domain; Region: CCG; pfam02754
198214006610	hypothetical protein; Provisional; Region: PRK09956
198214006611	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
198214006612	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788578 (268 aa). BLAST with identity of 98% in 153 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214006613	hypothetical protein; Provisional; Region: PRK03673
198214006614	Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885
198214006615	putative MPT binding site; other site
198214006616	Competence-damaged protein; Region: CinA; cl00666
198214006617	YfaZ precursor; Region: YfaZ; pfam07437
198214006618	nucleoside triphosphatase NudI; Provisional; Region: PRK15472
198214006619	Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP; cd07040
198214006620	catalytic core [active]
198214006621	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
198214006622	inhibitor-cofactor binding pocket; inhibition site
198214006623	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214006624	catalytic residue [active]
198214006625	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714
198214006626	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
198214006627	Ligand binding site; other site
198214006628	Putative Catalytic site; other site
198214006629	DXD motif; other site
198214006630	4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional; Region: PRK15394
198214006631	Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs; Region: CE4_ArnD; cd10939
198214006632	putative active site [active]
198214006633	putative catalytic site [active]
198214006634	putative Zn binding site [ion binding]; other site
198214006635	4-amino-4-deoxy-L-arabinose transferase; Provisional; Region: arnT; PRK13279
198214006636	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807
198214006637	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional; Region: PRK02971
198214006638	signal transduction protein PmrD; Provisional; Region: PRK15450
198214006639	O-succinylbenzoic acid--CoA ligase; Provisional; Region: PRK09029
198214006640	O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE); Region: OSB_CoA_lg; cd05912
198214006641	acyl-activating enzyme (AAE) consensus motif; other site
198214006642	putative AMP binding site [chemical binding]; other site
198214006643	putative active site [active]
198214006644	putative CoA binding site [chemical binding]; other site
198214006645	O-succinylbenzoate synthase; Provisional; Region: PRK05105
198214006646	o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway; Region: OSBS; cd03320
198214006647	active site
198214006648	dihydroxynaphthoic acid synthetase; Validated; Region: PRK07396
198214006649	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
198214006650	substrate binding site [chemical binding]; other site
198214006651	oxyanion hole (OAH) forming residues; other site
198214006652	trimer interface [polypeptide binding]; other site
198214006653	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Provisional; Region: PRK11126
198214006654	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Region: menH_SHCHC; TIGR03695
198214006655	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; Validated; Region: PRK07449
198214006656	Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate synthase (MenD) and related proteins; Region: TPP_PYR_MenD; cd07037
198214006657	dimer interface [polypeptide binding]; other site
198214006658	tetramer interface [polypeptide binding]; other site
198214006659	PYR/PP interface [polypeptide binding]; other site
198214006660	TPP binding site [chemical binding]; other site
198214006661	Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key...; Region: TPP_SHCHC_synthase; cd02009
198214006662	TPP-binding site; other site
198214006663	isochorismate synthases; Region: isochor_syn; TIGR00543
198214006664	hypothetical protein; Provisional; Region: PRK10404
198214006665	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214006666	Coenzyme A binding pocket [chemical binding]; other site
198214006667	ribonuclease BN; Region: true_RNase_BN; TIGR02649
198214006668	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006669	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006670	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006671	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006672	Similar to Escherichia coli K12  aminopeptidase gi: 1788607 (326 aa). BLAST with identity of 96% in 213 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214006673	Domain of unknown function (DUF1877); Region: DUF1877; pfam08974
198214006674	NADH dehydrogenase subunit 2; Provisional; Region: ND2; MTH00200
198214006675	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
198214006676	NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846
198214006677	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
198214006678	NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590
198214006679	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
198214006680	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
198214006681	NADH:ubiquinone oxidoreductase subunit K; Validated; Region: PRK05715
198214006682	NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638
198214006683	NADH dehydrogenase subunit I; Provisional; Region: PRK05888
198214006684	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214006685	4Fe-4S double cluster binding domain; Region: Fer4_16; pfam13484
198214006686	NADH:ubiquinone oxidoreductase subunit H; Provisional; Region: PRK06076
198214006687	NADH dehydrogenase subunit G; Validated; Region: PRK08166
198214006688	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214006689	catalytic loop [active]
198214006690	iron binding site [ion binding]; other site
198214006691	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588
198214006692	MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory...; Region: MopB_NDH-1_NuoG2-N7; cd02771
198214006693	[4Fe-4S] binding site [ion binding]; other site
198214006694	MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex...; Region: MopB_CT_NDH-1_NuoG2-N7; cd02788
198214006695	NADH dehydrogenase I subunit F; Provisional; Region: PRK11278
198214006696	Respiratory-chain NADH dehydrogenase 51 Kd subunit; Region: Complex1_51K; pfam01512
198214006697	SLBB domain; Region: SLBB; pfam10531
198214006698	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Region: NADH_4Fe-4S; pfam10589
198214006699	NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]; Region: NuoE; COG1905
198214006700	TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes; Region: TRX_Fd_NuoE; cd03064
198214006701	putative dimer interface [polypeptide binding]; other site
198214006702	[2Fe-2S] cluster binding site [ion binding]; other site
198214006703	NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]; Region: NuoC; COG0852
198214006704	bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional; Region: PRK11742
198214006705	NADH dehydrogenase I, D subunit; Region: NuoD; TIGR01962
198214006706	NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]; Region: NuoB; COG0377
198214006707	NADH:ubiquinone oxidoreductase subunit A; Validated; Region: PRK06602
198214006708	DNA-binding transcriptional repressor LrhA; Provisional; Region: PRK15092
198214006709	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214006710	The C-terminal substrate domain of LysR-like regulator LrhA (LysR homologue A) and that of closely related homologs, contains the type 2 periplasmic binding fold; Region: PBP2_LrhA_like; cd08439
198214006711	putative dimerization interface [polypeptide binding]; other site
198214006712	aminotransferase AlaT; Validated; Region: PRK09265
198214006713	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214006714	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214006715	homodimer interface [polypeptide binding]; other site
198214006716	catalytic residue [active]
198214006717	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
198214006718	Zn2+ binding site [ion binding]; other site
198214006719	Mg2+ binding site [ion binding]; other site
198214006720	Permease SLC13 (solute carrier 13).  The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115
198214006721	transmembrane helices; other site
198214006722	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
198214006723	TrkA-C domain; Region: TrkA_C; pfam02080
198214006724	TrkA-C domain; Region: TrkA_C; pfam02080
198214006725	Permease SLC13 (solute carrier 13).  The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115
198214006726	putative phosphatase; Provisional; Region: PRK11587
198214006727	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214006728	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214006729	active site
198214006730	motif I; other site
198214006731	motif II; other site
198214006732	hypothetical protein; Validated; Region: PRK05445
198214006733	hypothetical protein; Provisional; Region: PRK01816
198214006734	acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180
198214006735	phosphate acetyltransferase; Reviewed; Region: PRK05632
198214006736	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
198214006737	DRTGG domain; Region: DRTGG; pfam07085
198214006738	phosphate acetyltransferase; Region: pta; TIGR00651
198214006739	hypothetical protein; Provisional; Region: PRK11588
198214006740	Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly...; Region: Nudix_Hydrolase_38; cd04697
198214006741	nudix motif; other site
198214006742	Escherichia coli YfcE and related proteins, metallophosphatase domain; Region: MPP_YfcE; cd00841
198214006743	active site
198214006744	metal binding site [ion binding]; metal-binding site
198214006745	homotetramer interface [polypeptide binding]; other site
198214006746	glutathione S-transferase; Provisional; Region: PRK15113
198214006747	Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of  glutathione (GSH) with a wide range of endogenous and xenobiotic...; Region: GST_N_family; cd00570
198214006748	C-terminal domain interface [polypeptide binding]; other site
198214006749	GSH binding site (G-site) [chemical binding]; other site
198214006750	dimer interface [polypeptide binding]; other site
198214006751	C-terminal, alpha helical domain of an unknown subfamily 4 of Glutathione S-transferases; Region: GST_C_4; cd03195
198214006752	N-terminal domain interface [polypeptide binding]; other site
198214006753	putative dimer interface [polypeptide binding]; other site
198214006754	putative substrate binding pocket (H-site) [chemical binding]; other site
198214006755	GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972
198214006756	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
198214006757	C-terminal domain interface [polypeptide binding]; other site
198214006758	GSH binding site (G-site) [chemical binding]; other site
198214006759	dimer interface [polypeptide binding]; other site
198214006760	C-terminal, alpha helical domain of Escherichia coli YfcG Glutathione S-transferases and related uncharacterized proteins; Region: GST_C_YfcG_like; cd10291
198214006761	N-terminal domain interface [polypeptide binding]; other site
198214006762	putative dimer interface [polypeptide binding]; other site
198214006763	active site
198214006764	Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and...; Region: DHNA_DHNTPE; cd00534
198214006765	homooctamer interface [polypeptide binding]; other site
198214006766	active site
198214006767	atypical (a) SDRs, subgroup 8; Region: SDR_a8; cd05242
198214006768	Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]; Region: COG1090
198214006769	putative NAD(P) binding site [chemical binding]; other site
198214006770	putative active site [active]
198214006771	putative transposase; Provisional; Region: PRK09857
198214006772	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
198214006773	histidine/lysine/arginine/ornithine transporter subunit; Provisional; Region: PRK10619
198214006774	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
198214006775	Walker A/P-loop; other site
198214006776	ATP binding site [chemical binding]; other site
198214006777	Q-loop/lid; other site
198214006778	ABC transporter signature motif; other site
198214006779	Walker B; other site
198214006780	D-loop; other site
198214006781	H-loop/switch region; other site
198214006782	ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]; Region: ArtM; COG4160
198214006783	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214006784	dimer interface [polypeptide binding]; other site
198214006785	conserved gate region; other site
198214006786	putative PBP binding loops; other site
198214006787	ABC-ATPase subunit interface; other site
198214006788	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
198214006789	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214006790	dimer interface [polypeptide binding]; other site
198214006791	conserved gate region; other site
198214006792	putative PBP binding loops; other site
198214006793	ABC-ATPase subunit interface; other site
198214006794	histidine ABC transporter substrate-binding protein HisJ; Provisional; Region: PRK15437
198214006795	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214006796	substrate binding pocket [chemical binding]; other site
198214006797	membrane-bound complex binding site; other site
198214006798	hinge residues; other site
198214006799	ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional; Region: PRK15010
198214006800	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214006801	substrate binding pocket [chemical binding]; other site
198214006802	membrane-bound complex binding site; other site
198214006803	hinge residues; other site
198214006804	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional; Region: PRK06029
198214006805	amidophosphoribosyltransferase; Provisional; Region: PRK09246
198214006806	Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of  glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the...; Region: GPATase_N; cd00715
198214006807	active site
198214006808	tetramer interface [polypeptide binding]; other site
198214006809	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214006810	active site
198214006811	colicin V production protein; Provisional; Region: PRK10845
198214006812	cell division protein DedD; Provisional; Region: PRK11633
198214006813	Sporulation related domain; Region: SPOR; pfam05036
198214006814	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional; Region: PRK10846
198214006815	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
198214006816	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
198214006817	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
198214006818	hypothetical protein; Provisional; Region: PRK10847
198214006819	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
198214006820	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
198214006821	dimerization interface 3.5A [polypeptide binding]; other site
198214006822	active site
198214006823	putative semialdehyde dehydrogenase; Provisional; Region: PRK08040
198214006824	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; pfam01118
198214006825	Semialdehyde dehydrogenase, dimerization domain; Region: Semialdhyde_dhC; pfam02774
198214006826	erythronate-4-phosphate dehydrogenase PdxB; Provisional; Region: PRK15438
198214006827	D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; Region: ErythrP_dh; cd12158
198214006828	ligand binding site [chemical binding]; other site
198214006829	NAD binding site [chemical binding]; other site
198214006830	catalytic site [active]
198214006831	homodimer interface [polypeptide binding]; other site
198214006832	flagella biosynthesis regulator; Provisional; Region: flk; PRK10715
198214006833	putative transporter; Provisional; Region: PRK12382
198214006834	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214006835	putative substrate translocation pore; other site
198214006836	3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK07967
198214006837	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
198214006838	dimer interface [polypeptide binding]; other site
198214006839	active site
198214006840	Uncharacterized conserved protein [Function unknown]; Region: COG4121
198214006841	bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed; Region: mnmC; PRK01747
198214006842	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain; Region: MnmC_Cterm; TIGR03197
198214006843	YfcL protein; Region: YfcL; pfam08891
198214006844	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3101
198214006845	hypothetical protein; Provisional; Region: PRK10621
198214006846	Murein endopeptidase [Cell envelope biogenesis, outer membrane]; Region: MepA; COG3770
198214006847	penicillin-insensitive murein endopeptidase; Reviewed; Region: mepA; PRK09429
198214006848	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
198214006849	Tetramer interface [polypeptide binding]; other site
198214006850	active site
198214006851	FMN-binding site [chemical binding]; other site
198214006852	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK11805
198214006853	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214006854	S-adenosylmethionine binding site [chemical binding]; other site
198214006855	hypothetical protein; Provisional; Region: PRK04946
198214006856	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2840
198214006857	Protein of unknown function (DUF2544); Region: DUF2544; pfam11245
198214006858	Fimbrial protein; Region: Fimbrial; cl01416
198214006859	Fimbrial protein; Region: Fimbrial; cl01416
198214006860	Fimbrial protein; Region: Fimbrial; cl01416
198214006861	Similar to Escherichia coli K12  chaperone gi: 1788677 (251 aa). BLAST with identity of 88% in 250 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214006862	Similar to Escherichia coli K12  outer membrane protein gi: 1788679 (579 aa). BLAST with identity of 97% in 577 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214006863	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214006864	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214006865	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214006866	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214006867	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214006868	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
198214006869	catalytic core [active]
198214006870	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154
198214006871	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
198214006872	substrate binding site [chemical binding]; other site
198214006873	oxyanion hole (OAH) forming residues; other site
198214006874	trimer interface [polypeptide binding]; other site
198214006875	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
198214006876	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
198214006877	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
198214006878	3-ketoacyl-CoA thiolase; Reviewed; Region: fadI; PRK08963
198214006879	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
198214006880	dimer interface [polypeptide binding]; other site
198214006881	active site
198214006882	conserved hypothetical protein; Region: TIGR00743
198214006883	long-chain fatty acid outer membrane transporter; Provisional; Region: PRK10716
198214006884	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214006885	ABC transporter outer membrane lipoprotein; Provisional; Region: PRK15091
198214006886	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
198214006887	putative transposase OrfB; Reviewed; Region: PHA02517
198214006888	HTH-like domain; Region: HTH_21; pfam13276
198214006889	Integrase core domain; Region: rve; pfam00665
198214006890	Integrase core domain; Region: rve_3; pfam13683
198214006891	Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]; Region: SacC; COG1621
198214006892	Glycosyl hydrolase family 32, beta-fructosidases; Region: GH32_B_Fructosidase; cd08996
198214006893	substrate binding [chemical binding]; other site
198214006894	active site
198214006895	Glycosyl hydrolases family 32 C terminal; Region: Glyco_hydro_32C; pfam08244
198214006896	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214006897	DNA binding site [nucleotide binding]
198214006898	domain linker motif; other site
198214006899	Periplasmic binding proteins and sugar binding domain of LacI family; Region: Peripla_BP_1; pfam00532
198214006900	Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_sucrose_transcription_regulator; cd06288
198214006901	putative dimerization interface [polypeptide binding]; other site
198214006902	putative ligand binding site [chemical binding]; other site
198214006903	fructuronate transporter; Provisional; Region: PRK10034; cl15264
198214006904	D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine  to pyruvate and ammonia.  D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive...; Region: D-Ser-dehyd; cd06447
198214006905	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214006906	catalytic residue [active]
198214006907	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
198214006908	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214006909	putative substrate translocation pore; other site
198214006910	efflux pump membrane protein (multidrug resistance protein A); Region: 8a0101; TIGR00998
198214006911	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214006912	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214006913	DNA-binding transcriptional activator EvgA; Provisional; Region: PRK09958
198214006914	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006915	active site
198214006916	phosphorylation site [posttranslational modification]
198214006917	intermolecular recognition site; other site
198214006918	dimerization interface [polypeptide binding]; other site
198214006919	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214006920	DNA binding residues [nucleotide binding]
198214006921	dimerization interface [polypeptide binding]; other site
198214006922	hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional; Region: PRK09959
198214006923	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214006924	substrate binding pocket [chemical binding]; other site
198214006925	membrane-bound complex binding site; other site
198214006926	hinge residues; other site
198214006927	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214006928	substrate binding pocket [chemical binding]; other site
198214006929	membrane-bound complex binding site; other site
198214006930	hinge residues; other site
198214006931	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214006932	dimer interface [polypeptide binding]; other site
198214006933	phosphorylation site [posttranslational modification]
198214006934	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214006935	ATP binding site [chemical binding]; other site
198214006936	Mg2+ binding site [ion binding]; other site
198214006937	G-X-G motif; other site
198214006938	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006939	active site
198214006940	phosphorylation site [posttranslational modification]
198214006941	intermolecular recognition site; other site
198214006942	dimerization interface [polypeptide binding]; other site
198214006943	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
198214006944	putative binding surface; other site
198214006945	active site
198214006946	putative CoA-transferase; Provisional; Region: PRK11430
198214006947	putative transporter YfdV; Provisional; Region: PRK09903
198214006948	oxalyl-CoA decarboxylase; Region: oxalate_oxc; TIGR03254
198214006949	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
198214006950	PYR/PP interface [polypeptide binding]; other site
198214006951	dimer interface [polypeptide binding]; other site
198214006952	TPP binding site [chemical binding]; other site
198214006953	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
198214006954	Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL...; Region: TPP_BZL_OCoD_HPCL; cd02004
198214006955	TPP-binding site; other site
198214006956	dimer interface [polypeptide binding]; other site
198214006957	formyl-coenzyme A transferase; Provisional; Region: PRK05398
198214006958	hypothetical protein; Provisional; Region: PRK10316
198214006959	YfdX protein; Region: YfdX; pfam10938
198214006960	Protein of unknown function (DUF2545); Region: DUF2545; pfam10810
198214006961	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
198214006962	putative acyl-acceptor binding pocket; other site
198214006963	aminotransferase; Validated; Region: PRK08175
198214006964	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214006965	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214006966	homodimer interface [polypeptide binding]; other site
198214006967	catalytic residue [active]
198214006968	Similar to Escherichia coli K12  sensor protein gi: 1788723 (566 aa). BLAST with identity of 99% in 496 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214006969	Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]; Region: LytT; COG3279
198214006970	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214006971	active site
198214006972	phosphorylation site [posttranslational modification]
198214006973	intermolecular recognition site; other site
198214006974	dimerization interface [polypeptide binding]; other site
198214006975	LytTr DNA-binding domain; Region: LytTR; pfam04397
198214006976	Similar to Escherichia coli K12  ARAC-type regulatory protein gi: 1788725 (286 aa). BLAST with identity of 97% in 286 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214006977	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
198214006978	dimerization domain swap beta strand [polypeptide binding]; other site
198214006979	regulatory protein interface [polypeptide binding]; other site
198214006980	active site
198214006981	regulatory phosphorylation site [posttranslational modification]; other site
198214006982	PEP-utilizing enzyme, N-terminal; Region: PEP-utilizers_N; pfam05524
198214006983	Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080
198214006984	PEP-utilizing enzyme, mobile domain; Region: PEP-utilizers; pfam00391
198214006985	PEP-utilizing enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
198214006986	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214006987	active site
198214006988	phosphorylation site [posttranslational modification]
198214006989	M42 Peptidases, also known as glutamyl aminopeptidase family; Region: M42; cd05638
198214006990	oligomer interface [polypeptide binding]; other site
198214006991	active site
198214006992	metal binding site [ion binding]; metal-binding site
198214006993	Similar to Escherichia coli K12  peptidase gi: 1788728 (362 aa). BLAST with identity of 96% in 361 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214006994	Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]; Region: FruA; COG1299
198214006995	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
198214006996	active site
198214006997	P-loop; other site
198214006998	phosphorylation site [posttranslational modification]
198214006999	glucokinase; Provisional; Region: glk; PRK00292
198214007000	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214007001	nucleotide binding site [chemical binding]; other site
198214007002	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400
198214007003	Cl- selectivity filter; other site
198214007004	Cl- binding residues [ion binding]; other site
198214007005	pore gating glutamate residue; other site
198214007006	dimer interface [polypeptide binding]; other site
198214007007	Protein of unknown function (DUF2502); Region: DUF2502; pfam10697
198214007008	manganese transport protein MntH; Reviewed; Region: PRK00701
198214007009	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
198214007010	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
198214007011	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
198214007012	Nucleoside recognition; Region: Gate; pfam07670
198214007013	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
198214007014	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788739 (769 aa). BLAST with identity of 99% in 639 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214007015	Putative transcription regulator (DUF1323); Region: DUF1323; pfam07037
198214007016	Putative transcription regulator (DUF1323); Region: DUF1323; pfam07037
198214007017	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
198214007018	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
198214007019	active site
198214007020	HIGH motif; other site
198214007021	KMSKS motif; other site
198214007022	Protein of unknown function (DUF3150); Region: DUF3150; pfam11348
198214007023	FlxA-like protein; Region: FlxA; pfam14282
198214007024	Transcriptional regulator [Transcription]; Region: LysR; COG0583
198214007025	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214007026	TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440
198214007027	putative dimerization interface [polypeptide binding]; other site
198214007028	SBF-like CPA transporter family (DUF4137); Region: DUF4137; pfam13593
198214007029	NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956
198214007030	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
198214007031	nucleotide binding pocket [chemical binding]; other site
198214007032	K-X-D-G motif; other site
198214007033	catalytic site [active]
198214007034	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
198214007035	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
198214007036	Helix-hairpin-helix domain; Region: HHH_5; pfam14520
198214007037	Helix-hairpin-helix motif; Region: HHH_2; pfam12826
198214007038	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
198214007039	Dimer interface [polypeptide binding]; other site
198214007040	BRCT sequence motif; other site
198214007041	cell division protein ZipA; Provisional; Region: PRK03427
198214007042	ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic...; Region: ZipA; cd00231
198214007043	FtsZ protein binding site [polypeptide binding]; other site
198214007044	putative sulfate transport protein CysZ; Validated; Region: PRK04949
198214007045	cysteine synthase; Region: PLN02565
198214007046	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
198214007047	dimer interface [polypeptide binding]; other site
198214007048	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214007049	catalytic residue [active]
198214007050	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
198214007051	dimerization domain swap beta strand [polypeptide binding]; other site
198214007052	regulatory protein interface [polypeptide binding]; other site
198214007053	active site
198214007054	regulatory phosphorylation site [posttranslational modification]; other site
198214007055	phosphoenolpyruvate-protein phosphotransferase; Provisional; Region: PRK11177
198214007056	PEP-utilizing enzyme, N-terminal; Region: PEP-utilizers_N; pfam05524
198214007057	PEP-utilizing enzyme, mobile domain; Region: PEP-utilizers; pfam00391
198214007058	PEP-utilizing enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
198214007059	PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_glc; cd00210
198214007060	HPr interaction site; other site
198214007061	glycerol kinase (GK) interaction site [polypeptide binding]; other site
198214007062	active site
198214007063	phosphorylation site [posttranslational modification]
198214007064	Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and...; Region: pyridoxal_pyridoxamine_kinase; cd01173
198214007065	dimer interface [polypeptide binding]; other site
198214007066	pyridoxal binding site [chemical binding]; other site
198214007067	ATP binding site [chemical binding]; other site
198214007068	hypothetical protein; Provisional; Region: PRK10318
198214007069	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788760 (245 aa). BLAST with identity of 96% in 241 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007070	cysteine synthase; Region: PLN02565
198214007071	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
198214007072	dimer interface [polypeptide binding]; other site
198214007073	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214007074	catalytic residue [active]
198214007075	sulfate/thiosulfate transporter subunit; Provisional; Region: PRK10851
198214007076	ATP-binding cassette domain of the sulfate transporter; Region: ABC_CysA_sulfate_importer; cd03296
198214007077	Walker A/P-loop; other site
198214007078	ATP binding site [chemical binding]; other site
198214007079	Q-loop/lid; other site
198214007080	ABC transporter signature motif; other site
198214007081	Walker B; other site
198214007082	D-loop; other site
198214007083	H-loop/switch region; other site
198214007084	TOBE-like domain; Region: TOBE_3; pfam12857
198214007085	Similar to Escherichia coli K12 sulfate transport system permease W protein gi: 1788762 (150 aa). BLAST with identity of 95% in 149 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007086	ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]; Region: CysU; COG0555
198214007087	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214007088	dimer interface [polypeptide binding]; other site
198214007089	conserved gate region; other site
198214007090	putative PBP binding loops; other site
198214007091	ABC-ATPase subunit interface; other site
198214007092	thiosulfate transporter subunit; Provisional; Region: PRK10852
198214007093	short chain dehydrogenase; Provisional; Region: PRK08226
198214007094	human DHRS6-like, classical (c) SDRs; Region: DHRS6_like_SDR_c; cd05368
198214007095	NAD binding site [chemical binding]; other site
198214007096	homotetramer interface [polypeptide binding]; other site
198214007097	homodimer interface [polypeptide binding]; other site
198214007098	active site
198214007099	transcriptional regulator MurR; Provisional; Region: PRK15482
198214007100	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
198214007101	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
198214007102	putative active site [active]
198214007103	N-acetylmuramic acid 6-phosphate etherase; Region: TIGR00274
198214007104	N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid...; Region: SIS_Etherase; cd05007
198214007105	putative active site [active]
198214007106	PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed; Region: murP; PRK09586
198214007107	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214007108	active site turn [active]
198214007109	phosphorylation site [posttranslational modification]
198214007110	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
198214007111	Dyp-type peroxidase family; Region: Dyp_perox; pfam04261
198214007112	RpoE-regulated lipoprotein; Provisional; Region: PRK10718
198214007113	Protein of unknown function (DUF2919); Region: DUF2919; pfam11143
198214007114	putative acetyltransferase; Provisional; Region: PRK03624
198214007115	Uncharacterized conserved protein [Function unknown]; Region: COG3375
198214007116	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214007117	Coenzyme A binding pocket [chemical binding]; other site
198214007118	N-acetylmuramoyl-l-alanine amidase I; Provisional; Region: PRK10319
198214007119	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
198214007120	active site
198214007121	metal binding site [ion binding]; metal-binding site
198214007122	coproporphyrinogen III oxidase; Provisional; Region: PRK05330
198214007123	Similar to Escherichia coli K12  ARAC-type regulatory protein gi: 1788778 (351 aa). BLAST with identity of 96% in 350 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214007124	carboxysome structural protein EutK; Provisional; Region: PRK15466
198214007125	Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain; Region: BMC_CcmK_like; cd07045
198214007126	Hexamer interface [polypeptide binding]; other site
198214007127	Hexagonal pore residue; other site
198214007128	EAP30/Vps36 family; Region: EAP30; pfam04157
198214007129	ethanolamine utilization protein EutL; Provisional; Region: PRK15405
198214007130	Bacterial Micro-Compartment (BMC) domain; Region: BMC; cl01982
198214007131	Hexamer interface [polypeptide binding]; other site
198214007132	Hexagonal pore residue; other site
198214007133	ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2; Region: BMC_EutL_repeat2; cd07050
198214007134	putative hexamer interface [polypeptide binding]; other site
198214007135	putative hexagonal pore; other site
198214007136	Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]; Region: COG2865
198214007137	HNH endonuclease; Region: HNH_3; pfam13392
198214007138	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945
198214007139	putative glutamate/gamma-aminobutyrate antiporter; Region: put_Glu_GABA_T; TIGR03813
198214007140	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
198214007141	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214007142	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214007143	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214007144	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214007145	ethanolamine utilization protein EutQ; Provisional; Region: PRK15457
198214007146	reactivating factor for ethanolamine ammonia lyase; Provisional; Region: eutA; PRK10719
198214007147	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cd00882
198214007148	G1 box; other site
198214007149	GTP/Mg2+ binding site [chemical binding]; other site
198214007150	G2 box; other site
198214007151	Switch I region; other site
198214007152	G3 box; other site
198214007153	Switch II region; other site
198214007154	G4 box; other site
198214007155	G5 box; other site
198214007156	1,2-propanediol utilization protein U (PduU)/ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain; Region: BMC_PduU-EutS; cd07046
198214007157	putative hexamer interface [polypeptide binding]; other site
198214007158	putative hexagonal pore; other site
198214007159	bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232
198214007160	Malic enzyme, N-terminal domain; Region: malic; pfam00390
198214007161	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
198214007162	putative NAD(P) binding site [chemical binding]; other site
198214007163	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
198214007164	transaldolase-like protein; Provisional; Region: PTZ00411
198214007165	Transaldolases including both TalA and TalB; Region: Transaldolase_TalAB; cd00957
198214007166	active site
198214007167	dimer interface [polypeptide binding]; other site
198214007168	catalytic residue [active]
198214007169	transketolase; Reviewed; Region: PRK12753
198214007170	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
198214007171	TPP-binding site [chemical binding]; other site
198214007172	dimer interface [polypeptide binding]; other site
198214007173	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
198214007174	PYR/PP interface [polypeptide binding]; other site
198214007175	dimer interface [polypeptide binding]; other site
198214007176	TPP binding site [chemical binding]; other site
198214007177	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
198214007178	Protein of unknown function (DUF1176); Region: DUF1176; pfam06674
198214007179	nudix-type nucleoside diphosphatase, YffH/AdpP family; Region: TIGR00052
198214007180	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
198214007181	dimer interface [polypeptide binding]; other site
198214007182	ADP-ribose binding site [chemical binding]; other site
198214007183	active site
198214007184	nudix motif; other site
198214007185	metal binding site [ion binding]; metal-binding site
198214007186	putative oxidoreductase Fe-S binding subunit; Reviewed; Region: PRK12769
198214007187	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214007188	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Region: Fer4_20; pfam14691
198214007189	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214007190	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214007191	'Similar to Escherichia coli K12 sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) gi: 1788812 (567 aa). BLAST with identity of 97% in 563 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214007192	aminoglycoside/multidrug efflux system; Provisional; Region: PRK10555
198214007193	MMPL family; Region: MMPL; cl14618
198214007194	MMPL family; Region: MMPL; cl14618
198214007195	Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine...; Region: ArsC_Yffb; cd03035
198214007196	putative catalytic residues [active]
198214007197	succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009
198214007198	M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891
198214007199	metal binding site [ion binding]; metal-binding site
198214007200	dimer interface [polypeptide binding]; other site
198214007201	hypothetical protein; Provisional; Region: PRK13664
198214007202	putative hydrolase; Provisional; Region: PRK11460
198214007203	Predicted esterase [General function prediction only]; Region: COG0400
198214007204	Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]; Region: COG1444
198214007205	Domain of unknown function (DUF1726); Region: DUF1726; pfam08351
198214007206	Helicase; Region: Helicase_RecD; pfam05127
198214007207	GNAT acetyltransferase 2; Region: GNAT_acetyltr_2; pfam13718
198214007208	Possible tRNA binding domain; Region: tRNA_bind_2; pfam13725
198214007209	Putative neutral zinc metallopeptidase; Region: Zn_peptidase; pfam04228
198214007210	bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415
198214007211	ATP binding site [chemical binding]; other site
198214007212	active site
198214007213	substrate binding site [chemical binding]; other site
198214007214	lipoprotein; Provisional; Region: PRK11679
198214007215	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
198214007216	dimer interface [polypeptide binding]; other site
198214007217	active site
198214007218	catalytic residue [active]
198214007219	glycine cleavage system transcriptional repressor; Provisional; Region: gcvR; PRK11589
198214007220	ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains; Region: ACT_GcvR_1; cd04893
198214007221	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
198214007222	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
198214007223	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
198214007224	catalytic triad [active]
198214007225	Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]; Region: HycB; COG1142
198214007226	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214007227	Similar to Escherichia coli K12 hydrogenase 4 membrane subunit gi: 1788827 (673 aa). BLAST with identity of 98% in 673 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007228	Formate hydrogenlyase subunit 4 [Energy production and conversion]; Region: HyfC; COG0650
198214007229	hydrogenase 4 subunit D; Validated; Region: PRK06525
198214007230	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
198214007231	hydrogenase 4 membrane subunit; Provisional; Region: hyfE; PRK11492
198214007232	hydrogenase 4 subunit F; Validated; Region: PRK06458
198214007233	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
198214007234	hydrogenase 4 subunit H; Validated; Region: PRK08222
198214007235	4Fe-4S binding domain; Region: Fer4; pfam00037
198214007236	Ni,Fe-hydrogenase III small subunit [Energy production and conversion]; Region: COG3260
198214007237	formate hydrogenlyase maturation protein HycH; Provisional; Region: PRK15084
198214007238	Similar to Escherichia coli K12 probable formate transporter (formate channel 2) gi: 1788837 (283 aa). BLAST with identity of 98% in 291 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214007239	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
198214007240	Putative Zn-dependent protease, contains TPR repeats [General function prediction only]; Region: COG4783
198214007241	Peptidase family M48; Region: Peptidase_M48; cl12018
198214007242	Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034
198214007243	catalytic residues [active]
198214007244	ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]; Region: DnaA; COG0593
198214007245	DNA replication initiation factor; Provisional; Region: PRK08084
198214007246	uracil transporter; Provisional; Region: PRK10720
198214007247	uracil-xanthine permease; Region: ncs2; TIGR00801
198214007248	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214007249	active site
198214007250	phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385
198214007251	PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis; Region: PurM; cd02196
198214007252	dimerization interface [polypeptide binding]; other site
198214007253	putative ATP binding site [chemical binding]; other site
198214007254	Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Region: FMT_core_GART; cd08645
198214007255	active site
198214007256	substrate binding site [chemical binding]; other site
198214007257	cosubstrate binding site; other site
198214007258	catalytic site [active]
198214007259	Polyphosphate kinase [Inorganic ion transport and metabolism]; Region: Ppk; COG0855
198214007260	Polyphosphate kinase N-terminal domain; Region: PP_kinase_N; pfam13089
198214007261	Polyphosphate kinase middle domain; Region: PP_kinase; pfam02503
198214007262	Catalytic C-terminal domain, first repeat, of prokaryotic polyphosphate kinase 1 and similar proteins; Region: PLDc_PPK1_C1; cd09114
198214007263	domain interface [polypeptide binding]; other site
198214007264	active site
198214007265	catalytic site [active]
198214007266	Catalytic C-terminal domain, second repeat, of Escherichia coli polyphosphate kinase 1 and similar proteins; Region: PLDc_EcPPK1_C2_like; cd09167
198214007267	domain interface [polypeptide binding]; other site
198214007268	active site
198214007269	catalytic site [active]
198214007270	exopolyphosphatase; Provisional; Region: PRK10854
198214007271	Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541
198214007272	Similar to Escherichia coli K12  cytochrome C-type biogenesis protein gi: 1788849 (748 aa). BLAST with identity of 99% in 1170 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214007273	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214007274	Transposase; Region: HTH_Tnp_1; pfam01527
198214007275	putative transposase OrfB; Reviewed; Region: PHA02517
198214007276	HTH-like domain; Region: HTH_21; pfam13276
198214007277	Integrase core domain; Region: rve; pfam00665
198214007278	Integrase core domain; Region: rve_3; pfam13683
198214007279	Protein of unknown function (DUF2633); Region: DUF2633; pfam11119
198214007280	Glycine zipper 2TM domain; Region: Rick_17kDa_Anti; cl10470
198214007281	GMP synthase; Reviewed; Region: guaA; PRK00074
198214007282	Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742
198214007283	AMP/PPi binding site [chemical binding]; other site
198214007284	candidate oxyanion hole; other site
198214007285	catalytic triad [active]
198214007286	potential glutamine specificity residues [chemical binding]; other site
198214007287	The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997
198214007288	ATP Binding subdomain [chemical binding]; other site
198214007289	Ligand Binding sites [chemical binding]; other site
198214007290	Dimerization subdomain; other site
198214007291	inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567
198214007292	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
198214007293	active site
198214007294	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a...; Region: CBS_pair_IMPDH; cd04601
198214007295	exodeoxyribonuclease VII, large subunit; Region: xseA; TIGR00237
198214007296	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
198214007297	generic binding surface II; other site
198214007298	generic binding surface I; other site
198214007299	zinc-ribbons; Region: zinc-ribbons_6; pfam07191
198214007300	GTP-binding protein Der; Reviewed; Region: PRK00093
198214007301	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
198214007302	G1 box; other site
198214007303	GTP/Mg2+ binding site [chemical binding]; other site
198214007304	Switch I region; other site
198214007305	G2 box; other site
198214007306	Switch II region; other site
198214007307	G3 box; other site
198214007308	G4 box; other site
198214007309	G5 box; other site
198214007310	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
198214007311	G1 box; other site
198214007312	GTP/Mg2+ binding site [chemical binding]; other site
198214007313	Switch I region; other site
198214007314	G2 box; other site
198214007315	G3 box; other site
198214007316	Switch II region; other site
198214007317	G4 box; other site
198214007318	G5 box; other site
198214007319	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; Region: KH_dom-like; pfam14714
198214007320	outer membrane biogenesis protein BamB; Provisional; Region: PRK11138
198214007321	PQQ-dependent dehydrogenases and related proteins; Region: PQQ_DH_like; cd00216
198214007322	Trp docking motif [polypeptide binding]; other site
198214007323	active site
198214007324	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2976
198214007325	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4649
198214007326	histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037
198214007327	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
198214007328	dimer interface [polypeptide binding]; other site
198214007329	motif 1; other site
198214007330	active site
198214007331	motif 2; other site
198214007332	motif 3; other site
198214007333	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
198214007334	anticodon binding site; other site
198214007335	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366
198214007336	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Region: ispG_gcpE; TIGR00612
198214007337	cytoskeletal protein RodZ; Provisional; Region: PRK10856
198214007338	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214007339	non-specific DNA binding site [nucleotide binding]; other site
198214007340	salt bridge; other site
198214007341	sequence-specific DNA binding site [nucleotide binding]; other site
198214007342	Domain of unknown function (DUF4115); Region: DUF4115; pfam13464
198214007343	23S rRNA m2A2503 methyltransferase; Region: TIGR00048
198214007344	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214007345	FeS/SAM binding site; other site
198214007346	Nucleoside diphosphate kinase; Region: NDK; pfam00334
198214007347	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
198214007348	active site
198214007349	multimer interface [polypeptide binding]; other site
198214007350	Transglycosylase; Region: Transgly; pfam00912
198214007351	penicillin-binding protein 1C; Provisional; Region: PRK11240
198214007352	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
198214007353	Penicillin-Binding Protein C-terminus Family; Region: BiPBP_C; pfam06832
198214007354	Similar to Escherichia coli K12  thiosulfate sulfurtransferase gi: 1788869 (335 aa). BLAST with identity of 98% in 161 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214007355	SseB protein N-terminal domain; Region: SseB; pfam07179
198214007356	enhanced serine sensitivity protein SseB; Provisional; Region: PRK11611
198214007357	SseB protein C-terminal domain; Region: SseB_C; pfam14581
198214007358	aminopeptidase B; Provisional; Region: PRK05015
198214007359	Peptidase; Region: DUF3663; pfam12404
198214007360	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
198214007361	interface (dimer of trimers) [polypeptide binding]; other site
198214007362	Substrate-binding/catalytic site; other site
198214007363	Zn-binding sites [ion binding]; other site
198214007364	hypothetical protein; Provisional; Region: PRK10721
198214007365	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214007366	catalytic loop [active]
198214007367	iron binding site [ion binding]; other site
198214007368	chaperone protein HscA; Provisional; Region: hscA; PRK05183
198214007369	Nucleotide-binding domain of HscA and similar proteins; Region: HscA_like_NBD; cd10236
198214007370	nucleotide binding site [chemical binding]; other site
198214007371	putative NEF/HSP70 interaction site [polypeptide binding]; other site
198214007372	SBD interface [polypeptide binding]; other site
198214007373	co-chaperone HscB; Provisional; Region: hscB; PRK05014
198214007374	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
198214007375	HSP70 interaction site [polypeptide binding]; other site
198214007376	HSCB C-terminal oligomerization domain; Region: HSCB_C; pfam07743
198214007377	iron-sulfur cluster assembly protein; Provisional; Region: iscA; PRK09502
198214007378	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
198214007379	trimerization site [polypeptide binding]; other site
198214007380	active site
198214007381	cysteine desulfurase; Provisional; Region: PRK14012
198214007382	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214007383	catalytic residue [active]
198214007384	DNA-binding transcriptional regulator IscR; Provisional; Region: PRK10857
198214007385	Rrf2 family protein; Region: rrf2_super; TIGR00738
198214007386	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional; Region: PRK15114
198214007387	SpoU rRNA Methylase family; Region: SpoU_methylase; cl17307
198214007388	IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639
198214007389	active site
198214007390	dimerization interface [polypeptide binding]; other site
198214007391	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
198214007392	Prolyl oligopeptidase family; Region: Peptidase_S9; cl19144
198214007393	stationary phase inducible protein CsiE; Provisional; Region: PRK11564
198214007394	PRD domain; Region: PRD; pfam00874
198214007395	PRD domain; Region: PRD; pfam00874
198214007396	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214007397	LacY proton/sugar symporter; Region: LacY_symp; pfam01306
198214007398	putative substrate translocation pore; other site
198214007399	DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906
198214007400	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214007401	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214007402	dimerization interface [polypeptide binding]; other site
198214007403	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
198214007404	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938
198214007405	iron-sulfur cluster [ion binding]; other site
198214007406	[2Fe-2S] cluster binding site [ion binding]; other site
198214007407	C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_NDO-like; cd08881
198214007408	beta subunit interface [polypeptide binding]; other site
198214007409	alpha subunit interface [polypeptide binding]; other site
198214007410	active site
198214007411	substrate binding site [chemical binding]; other site
198214007412	Fe binding site [ion binding]; other site
198214007413	Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the...; Region: ring_hydroxylating_dioxygenases_beta; cd00667
198214007414	inter-subunit interface; other site
198214007415	Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a...; Region: Rieske_RO_ferredoxin; cd03528
198214007416	[2Fe-2S] cluster binding site [ion binding]; other site
198214007417	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional; Region: PRK06200
198214007418	cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; Region: BphB-like_SDR_c; cd05348
198214007419	NAD binding site [chemical binding]; other site
198214007420	active site
198214007421	Similar to Escherichia coli K12 ferredoxin reductase subunit of phenylpropionate dioxygenase gi: 1788892 (401 aa). BLAST with identity of 99% in 408 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007422	Predicted membrane protein [Function unknown]; Region: COG2259
198214007423	aldose 1-epimerase, similar to Escherichia coli YphB; Region: Aldose_epim_Ec_YphB; cd09021
198214007424	active site
198214007425	catalytic residues [active]
198214007426	L-threonine dehydrogenase (TDH)-like; Region: THR_DH_like; cd08239
198214007427	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
198214007428	putative NAD(P) binding site [chemical binding]; other site
198214007429	catalytic Zn binding site [ion binding]; other site
198214007430	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214007431	TM-ABC transporter signature motif; other site
198214007432	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
198214007433	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
198214007434	Walker A/P-loop; other site
198214007435	ATP binding site [chemical binding]; other site
198214007436	Q-loop/lid; other site
198214007437	ABC transporter signature motif; other site
198214007438	Walker B; other site
198214007439	D-loop; other site
198214007440	H-loop/switch region; other site
198214007441	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
198214007442	Similar to Escherichia coli K12  LACI-type transcriptional regulator gi: 1788898 (328 aa). BLAST with identity of 97% in 327 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007443	Winged helix-turn-helix DNA-binding; Region: HTH_24; pfam13412
198214007444	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
198214007445	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214007446	nucleotide binding site [chemical binding]; other site
198214007447	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
198214007448	dimer interface [polypeptide binding]; other site
198214007449	active site
198214007450	glycine-pyridoxal phosphate binding site [chemical binding]; other site
198214007451	folate binding site [chemical binding]; other site
198214007452	bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional; Region: PRK13289
198214007453	Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen...; Region: globin; cd01040
198214007454	heme-binding site [chemical binding]; other site
198214007455	FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The...; Region: flavohem_like_fad_nad_binding; cd06184
198214007456	FAD binding pocket [chemical binding]; other site
198214007457	FAD binding motif [chemical binding]; other site
198214007458	phosphate binding motif [ion binding]; other site
198214007459	beta-alpha-beta structure motif; other site
198214007460	NAD binding pocket [chemical binding]; other site
198214007461	Heme binding  pocket [chemical binding]; other site
198214007462	nitrogen regulatory protein P-II 1; Provisional; Region: PRK10858
198214007463	response regulator GlrR; Provisional; Region: PRK15115
198214007464	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214007465	active site
198214007466	phosphorylation site [posttranslational modification]
198214007467	intermolecular recognition site; other site
198214007468	dimerization interface [polypeptide binding]; other site
198214007469	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214007470	Walker A motif; other site
198214007471	ATP binding site [chemical binding]; other site
198214007472	Walker B motif; other site
198214007473	arginine finger; other site
198214007474	hypothetical protein; Provisional; Region: PRK10722
198214007475	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
198214007476	HAMP domain; Region: HAMP; pfam00672
198214007477	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214007478	dimer interface [polypeptide binding]; other site
198214007479	phosphorylation site [posttranslational modification]
198214007480	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214007481	ATP binding site [chemical binding]; other site
198214007482	Mg2+ binding site [ion binding]; other site
198214007483	G-X-G motif; other site
198214007484	phosphoribosylformylglycinamidine synthase; Provisional; Region: PRK05297
198214007485	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat1; cd02203
198214007486	dimerization interface [polypeptide binding]; other site
198214007487	ATP binding site [chemical binding]; other site
198214007488	AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain...; Region: PurM-like; cl10019
198214007489	dimerization interface [polypeptide binding]; other site
198214007490	ATP binding site [chemical binding]; other site
198214007491	Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Region: GATase1_FGAR_AT; cd01740
198214007492	putative active site [active]
198214007493	catalytic triad [active]
198214007494	membrane-bound lytic transglycosylase F; Provisional; Region: PRK10859
198214007495	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214007496	substrate binding pocket [chemical binding]; other site
198214007497	membrane-bound complex binding site; other site
198214007498	hinge residues; other site
198214007499	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214007500	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214007501	catalytic residue [active]
198214007502	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
198214007503	nucleoside/Zn binding site; other site
198214007504	dimer interface [polypeptide binding]; other site
198214007505	catalytic motif [active]
198214007506	hypothetical protein; Provisional; Region: PRK11590
198214007507	Helix-turn-helix domain, rpiR family; Region: HTH_6; pfam01418
198214007508	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11557
198214007509	RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate...; Region: SIS_RpiR; cd05013
198214007510	putative active site [active]
198214007511	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
198214007512	Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768
198214007513	catalytic residues [active]
198214007514	catalytic nucleophile [active]
198214007515	Presynaptic Site I dimer interface [polypeptide binding]; other site
198214007516	Synaptic Antiparallel dimer interface [polypeptide binding]; other site
198214007517	Synaptic Flat tetramer interface [polypeptide binding]; other site
198214007518	Synaptic Site I dimer interface [polypeptide binding]; other site
198214007519	DNA binding site [nucleotide binding]
198214007520	ipaH island V
198214007521	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214007522	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
198214007523	Leucine Rich repeats (2 copies); Region: LRR_4; pfam12799
198214007524	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214007525	Domain of unknown function (DUF4376); Region: DUF4376; pfam14301
198214007526	Caudovirales tail fibre assembly protein; Region: Caudo_TAP; pfam02413
198214007527	Phage-related tail fibre protein [General function prediction only]; Region: COG5301
198214007528	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214007529	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214007530	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214007531	HTH-like domain; Region: HTH_21; pfam13276
198214007532	Integrase core domain; Region: rve; pfam00665
198214007533	Integrase core domain; Region: rve_3; pfam13683
198214007534	Phage-related tail fibre protein [General function prediction only]; Region: COG5301
198214007535	Protein of unknown function (DUF2612); Region: DUF2612; pfam11041
198214007536	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214007537	Transposase; Region: HTH_Tnp_1; pfam01527
198214007538	HTH-like domain; Region: HTH_21; pfam13276
198214007539	Integrase core domain; Region: rve; pfam00665
198214007540	Integrase core domain; Region: rve_3; pfam13683
198214007541	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
198214007542	holo-[acyl-carrier-protein] synthase; Region: acpS; TIGR00516
198214007543	Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in...; Region: PNPsynthase; cd00003
198214007544	active site
198214007545	hydrophilic channel; other site
198214007546	dimerization interface [polypeptide binding]; other site
198214007547	catalytic residues [active]
198214007548	active site lid [active]
198214007549	DNA repair protein RecO; Reviewed; Region: recO; PRK00085
198214007550	Recombination protein O N terminal; Region: RecO_N; pfam11967
198214007551	Recombination protein O C terminal; Region: RecO_C; pfam02565
198214007552	GTPase Era; Reviewed; Region: era; PRK00089
198214007553	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
198214007554	G1 box; other site
198214007555	GTP/Mg2+ binding site [chemical binding]; other site
198214007556	Switch I region; other site
198214007557	G2 box; other site
198214007558	Switch II region; other site
198214007559	G3 box; other site
198214007560	G4 box; other site
198214007561	G5 box; other site
198214007562	KH domain; Region: KH_2; pfam07650
198214007563	ribonuclease III; Reviewed; Region: rnc; PRK00102
198214007564	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
198214007565	dimerization interface [polypeptide binding]; other site
198214007566	active site
198214007567	metal binding site [ion binding]; metal-binding site
198214007568	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
198214007569	dsRNA binding site [nucleotide binding]; other site
198214007570	signal peptidase I; Provisional; Region: PRK10861
198214007571	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
198214007572	Catalytic site [active]
198214007573	GTP-binding protein LepA; Provisional; Region: PRK05433
198214007574	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
198214007575	G1 box; other site
198214007576	putative GEF interaction site [polypeptide binding]; other site
198214007577	GTP/Mg2+ binding site [chemical binding]; other site
198214007578	Switch I region; other site
198214007579	G2 box; other site
198214007580	G3 box; other site
198214007581	Switch II region; other site
198214007582	G4 box; other site
198214007583	G5 box; other site
198214007584	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
198214007585	Elongation Factor G, domain II; Region: EFG_II; pfam14492
198214007586	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
198214007587	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
198214007588	SoxR reducing system protein RseC; Provisional; Region: PRK10862
198214007589	anti-sigma E factor; Provisional; Region: rseB; PRK09455
198214007590	anti-RNA polymerase sigma factor SigE; Provisional; Region: PRK10863
198214007591	Anti sigma-E protein RseA, N-terminal domain; Region: RseA_N; pfam03872
198214007592	Anti sigma-E protein RseA, C-terminal domain; Region: RseA_C; pfam03873
198214007593	RNA polymerase sigma factor RpoE; Region: RpoE_Sigma70; TIGR02939
198214007594	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
198214007595	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
198214007596	DNA binding residues [nucleotide binding]
198214007597	'Similar to Escherichia coli K12 quinolinate synthetase, B protein gi: 1788928 (541 aa). BLAST with identity of 97% in 541 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214007598	Predicted O-methyltransferase [General function prediction only]; Region: COG4123
198214007599	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214007600	S-adenosylmethionine binding site [chemical binding]; other site
198214007601	ATP-dependent RNA helicase SrmB; Provisional; Region: PRK11192
198214007602	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
198214007603	ATP binding site [chemical binding]; other site
198214007604	Mg++ binding site [ion binding]; other site
198214007605	motif III; other site
198214007606	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214007607	nucleotide binding region [chemical binding]; other site
198214007608	ATP-binding site [chemical binding]; other site
198214007609	Transcriptional regulator [Transcription]; Region: LysR; COG0583
198214007610	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214007611	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
198214007612	dimerization interface [polypeptide binding]; other site
198214007613	cysteine/O-acetylserine exporter; Provisional; Region: PRK10323
198214007614	autonomous glycyl radical cofactor GrcA; Provisional; Region: PRK11127
198214007615	putative methyltransferase; Provisional; Region: PRK10864
198214007616	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; pfam08032
198214007617	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
198214007618	thioredoxin 2; Provisional; Region: PRK10996
198214007619	zinc-ribbon domain; Region: zinc_ribbon_5; cl11777
198214007620	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
198214007621	catalytic residues [active]
198214007622	Uncharacterized conserved protein [Function unknown]; Region: COG3148
198214007623	Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: COG1042
198214007624	CoA binding domain; Region: CoA_binding_2; pfam13380
198214007625	Succinyl-CoA ligase like flavodoxin domain; Region: Succ_CoA_lig; pfam13607
198214007626	ATP-grasp domain; Region: ATP-grasp_5; pfam13549
198214007627	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
198214007628	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
198214007629	phosphatidylserine synthase; Provisional; Region: pssA; PRK09428
198214007630	Catalytic domain, repeat 1, of phosphatidylserine synthases from gram-negative bacteria; Region: PLDc_PSS_G_neg_1; cd09134
198214007631	domain interface [polypeptide binding]; other site
198214007632	putative active site [active]
198214007633	catalytic site [active]
198214007634	Catalytic domain, repeat 2, of phosphatidylserine synthases from gram-negative bacteria; Region: PLDc_PSS_G_neg_2; cd09136
198214007635	domain interface [polypeptide binding]; other site
198214007636	putative active site [active]
198214007637	catalytic site [active]
198214007638	lipoprotein; Provisional; Region: PRK10759
198214007639	alpha-ketoglutarate transporter; Provisional; Region: PRK10406
198214007640	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214007641	putative substrate translocation pore; other site
198214007642	potential protein location (hypothetical protein SF2650 [Shigella flexneri 2a str. 301]) that overlaps RNA (16S ribosomal RNA)
198214007643	outer membrane biogenesis protein BamD; Provisional; Region: PRK10866
198214007644	Protein of unknown function (DUF3897); Region: DUF3897; cl17494
198214007645	23S rRNA pseudouridine synthase D; Provisional; Region: rluD; PRK11180
198214007646	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214007647	RNA binding surface [nucleotide binding]; other site
198214007648	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
198214007649	active site
198214007650	hypothetical protein; Provisional; Region: PRK10723
198214007651	protein disaggregation chaperone; Provisional; Region: PRK10865
198214007652	Clp amino terminal domain; Region: Clp_N; pfam02861
198214007653	Clp amino terminal domain; Region: Clp_N; pfam02861
198214007654	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214007655	Walker A motif; other site
198214007656	ATP binding site [chemical binding]; other site
198214007657	Walker B motif; other site
198214007658	arginine finger; other site
198214007659	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214007660	Walker A motif; other site
198214007661	ATP binding site [chemical binding]; other site
198214007662	Walker B motif; other site
198214007663	arginine finger; other site
198214007664	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
198214007665	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214007666	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214007667	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214007668	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
198214007669	30S subunit binding site; other site
198214007670	bifunctional chorismate mutase/prephenate dehydratase; Provisional; Region: pheA; PRK10622
198214007671	chorismate mutase domain of proteobacterial P-protein, clade 1; Region: CM_P_1; TIGR01797
198214007672	Prephenate dehydratase; Region: PDT; pfam00800
198214007673	C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905
198214007674	putative L-Phe binding site [chemical binding]; other site
198214007675	bifunctional chorismate mutase/prephenate dehydrogenase; Provisional; Region: tyrA; PRK11199
198214007676	chorismate mutase domain of T-protein; Region: CM_T; TIGR01799
198214007677	prephenate dehydrogenase; Validated; Region: PRK08507
198214007678	phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12755
198214007679	lipoprotein; Provisional; Region: PRK11443
198214007680	Domain of unknown function (DUF4154); Region: DUF4154; pfam13689
198214007681	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788956 (409 aa). BLAST with identity of 99% in 409 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007682	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
198214007683	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
198214007684	ligand binding site [chemical binding]; other site
198214007685	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
198214007686	tRNA (guanine-N(1)-)-methyltransferase; Reviewed; Region: trmD; PRK00026
198214007687	16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK00122
198214007688	RimM N-terminal domain; Region: RimM; pfam01782
198214007689	PRC-barrel domain; Region: PRC; pfam05239
198214007690	30S ribosomal protein S16; Reviewed; Region: rpsP; PRK00040
198214007691	signal recognition particle protein; Provisional; Region: PRK10867
198214007692	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
198214007693	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
198214007694	P loop; other site
198214007695	GTP binding site [chemical binding]; other site
198214007696	Signal peptide binding domain; Region: SRP_SPB; pfam02978
198214007697	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4137
198214007698	hypothetical protein; Provisional; Region: PRK11573
198214007699	Domain of unknown function DUF21; Region: DUF21; pfam01595
198214007700	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
198214007701	Transporter associated domain; Region: CorC_HlyC; smart01091
198214007702	Uncharacterized protein conserved in bacteria (DUF2317); Region: DUF2317; cl19511
198214007703	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
198214007704	dimer interface [polypeptide binding]; other site
198214007705	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
198214007706	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK03378
198214007707	recombination and repair protein; Provisional; Region: PRK10869
198214007708	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
198214007709	Walker A/P-loop; other site
198214007710	ATP binding site [chemical binding]; other site
198214007711	Q-loop/lid; other site
198214007712	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
198214007713	Q-loop/lid; other site
198214007714	ABC transporter signature motif; other site
198214007715	Walker B; other site
198214007716	D-loop; other site
198214007717	H-loop/switch region; other site
198214007718	outer membrane biogenesis protein BamE; Provisional; Region: PRK11548
198214007719	hypothetical protein; Validated; Region: PRK01777
198214007720	Coenzyme Q-binding protein COQ10p and similar proteins; Region: COQ10p_like; cd07813
198214007721	putative coenzyme Q binding site [chemical binding]; other site
198214007722	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
198214007723	SmpB-tmRNA interface; other site
198214007724	integrase; Provisional; Region: PRK09692
198214007725	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
198214007726	active site
198214007727	Int/Topo IB signature motif; other site
198214007728	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214007729	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214007730	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214007731	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214007732	Transposase; Region: HTH_Tnp_1; cl17663
198214007733	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214007734	putative transposase OrfB; Reviewed; Region: PHA02517
198214007735	HTH-like domain; Region: HTH_21; pfam13276
198214007736	Integrase core domain; Region: rve; pfam00665
198214007737	Integrase core domain; Region: rve_2; pfam13333
198214007738	Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); Region: AmyAc_bac1_AmyA; cd11315
198214007739	active site
198214007740	Glycosidases [Carbohydrate transport and metabolism]; Region: AmyA; COG0366
198214007741	Ca binding site [ion binding]; other site
198214007742	catalytic site [active]
198214007743	Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; pfam02806
198214007744	Clavaminic acid synthetase (CAS) -like;  CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases...; Region: CAS_like; cd00250
198214007745	substrate binding pocket [chemical binding]; other site
198214007746	active site
198214007747	iron coordination sites [ion binding]; other site
198214007748	Predicted dehydrogenase [General function prediction only]; Region: COG0579
198214007749	hydroxyglutarate oxidase; Provisional; Region: PRK11728
198214007750	'Similar to Escherichia coli K12 succinate-semialdehyde dehydrogenase, NADP-dependent activity gi: 1789015 (483 aa). BLAST with identity of 96% in 483 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214007751	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
198214007752	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Region: BioA; COG0161
198214007753	inhibitor-cofactor binding pocket; inhibition site
198214007754	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214007755	catalytic residue [active]
198214007756	DNA-binding transcriptional regulator CsiR; Provisional; Region: PRK11534
198214007757	helix_turn_helix gluconate operon transcriptional repressor; Region: HTH_GNTR; smart00345
198214007758	DNA-binding site [nucleotide binding]; DNA binding site
198214007759	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214007760	LysM domain/BON superfamily protein; Provisional; Region: PRK11198
198214007761	bacterial OsmY and nodulation domain; Region: BON; smart00749
198214007762	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214007763	Uncharacterized homolog of Blt101 [Function unknown]; Region: COG0401
198214007764	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214007765	HTH-like domain; Region: HTH_21; pfam13276
198214007766	Integrase core domain; Region: rve; pfam00665
198214007767	Integrase core domain; Region: rve_3; pfam13683
198214007768	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214007769	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214007770	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214007771	dimerization interface [polypeptide binding]; other site
198214007772	putative DNA binding site [nucleotide binding]; other site
198214007773	Transcriptional regulators [Transcription]; Region: MarR; COG1846
198214007774	putative Zn2+ binding site [ion binding]; other site
198214007775	Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases; Region: RHOD_YgaP; cd01527
198214007776	active site residue [active]
198214007777	Protein of unknown function (DUF2892); Region: DUF2892; pfam11127
198214007778	Domain in histone-like proteins of HNS family; Region: HNS; cl19571
198214007779	DNA binding protein, nucleoid-associated; Provisional; Region: PRK10328
198214007780	Protein of unknown function (DUF1144); Region: DUF1144; pfam06610
198214007781	hypothetical protein; Provisional; Region: PRK10556
198214007782	NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase...; Region: NrdH; cd02976
198214007783	catalytic residues [active]
198214007784	ribonucleotide reductase stimulatory protein; Reviewed; Region: nrdI; PRK03600
198214007785	ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK08188
198214007786	Ribonucleotide reductase N-terminal; Region: RNR_N; pfam08343
198214007787	Class I ribonucleotide reductase; Region: RNR_I; cd01679
198214007788	active site
198214007789	dimer interface [polypeptide binding]; other site
198214007790	catalytic residues [active]
198214007791	effector binding site; other site
198214007792	R2 peptide binding site; other site
198214007793	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
198214007794	dimer interface [polypeptide binding]; other site
198214007795	putative radical transfer pathway; other site
198214007796	diiron center [ion binding]; other site
198214007797	tyrosyl radical; other site
198214007798	glycine betaine transporter ATP-binding subunit; Provisional; Region: PRK10070
198214007799	ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; Region: ABC_Pro_Gly_Betaine; cd03294
198214007800	Walker A/P-loop; other site
198214007801	ATP binding site [chemical binding]; other site
198214007802	Q-loop/lid; other site
198214007803	ABC transporter signature motif; other site
198214007804	Walker B; other site
198214007805	D-loop; other site
198214007806	H-loop/switch region; other site
198214007807	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing...; Region: CBS_pair_ABC_OpuCA_assoc2; cd04583
198214007808	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214007809	dimer interface [polypeptide binding]; other site
198214007810	conserved gate region; other site
198214007811	putative PBP binding loops; other site
198214007812	ABC-ATPase subunit interface; other site
198214007813	glycine betaine transporter periplasmic subunit; Provisional; Region: proX; PRK11119
198214007814	Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Region: AzlC; COG1296
198214007815	putative L-valine exporter; Provisional; Region: PRK10408
198214007816	Similar to Escherichia coli K12 multidrug resistance secretion protein gi: 1789041 (391 aa). BLAST with identity of 97% in 391 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007817	drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711
198214007818	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214007819	putative substrate translocation pore; other site
198214007820	S-ribosylhomocysteinase; Provisional; Region: PRK02260
198214007821	Predicted membrane protein [Function unknown]; Region: COG1238
198214007822	beta-phosphoglucomutase family hydrolase; Region: PGMB-YQAB-SF; TIGR02009
198214007823	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214007824	active site
198214007825	motif I; other site
198214007826	motif II; other site
198214007827	potential protein location (hypothetical protein SF2718 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-R)
198214007828	carbon storage regulator; Provisional; Region: PRK01712
198214007829	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
198214007830	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
198214007831	motif 1; other site
198214007832	active site
198214007833	motif 2; other site
198214007834	motif 3; other site
198214007835	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
198214007836	DHHA1 domain; Region: DHHA1; pfam02272
198214007837	recombination regulator RecX; Reviewed; Region: recX; PRK00117
198214007838	recombinase A; Provisional; Region: recA; PRK09354
198214007839	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
198214007840	hexamer interface [polypeptide binding]; other site
198214007841	Walker A motif; other site
198214007842	ATP binding site [chemical binding]; other site
198214007843	Walker B motif; other site
198214007844	hypothetical protein; Validated; Region: PRK03661
198214007845	murein hydrolase B; Provisional; Region: PRK10760
198214007846	lytic murein transglycosylase B; Region: MltB; TIGR02282
198214007847	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214007848	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214007849	'Similar to Escherichia coli K12 PTS system, glucitol/sorbitol-specific IIC component, one of two gi: 1789054 (187 aa). BLAST with identity of 92% in 131 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.'
198214007850	Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]; Region: SrlE; COG3732
198214007851	Sorbitol phosphotransferase enzyme II N-terminus; Region: EIIBC-GUT_N; pfam03612
198214007852	Sorbitol phosphotransferase enzyme II C-terminus; Region: EIIBC-GUT_C; pfam07663
198214007853	PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional; Region: PRK10377
198214007854	sorbitol-6-phosphate dehydrogenase; Provisional; Region: PRK12384
198214007855	Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Region: SDH_SDR_c_like; cd05322
198214007856	putative NAD(P) binding site [chemical binding]; other site
198214007857	active site
198214007858	DNA-binding transcriptional activator GutM; Provisional; Region: PRK10234
198214007859	DNA-bindng transcriptional repressor SrlR; Provisional; Region: srlR; PRK10434
198214007860	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
198214007861	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214007862	D-arabinose 5-phosphate isomerase; Provisional; Region: gutQ; PRK11543
198214007863	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
198214007864	putative active site [active]
198214007865	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
198214007866	anaerobic nitric oxide reductase transcription regulator; Provisional; Region: PRK05022
198214007867	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
198214007868	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214007869	Walker A motif; other site
198214007870	ATP binding site [chemical binding]; other site
198214007871	Walker B motif; other site
198214007872	arginine finger; other site
198214007873	anaerobic nitric oxide reductase flavorubredoxin; Provisional; Region: PRK05452
198214007874	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
198214007875	NADPH-dependent FMN reductase; Region: FMN_red; cl00438
198214007876	Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are...; Region: rubredoxin; cd00730
198214007877	iron binding site [ion binding]; other site
198214007878	NADH:flavorubredoxin oxidoreductase; Provisional; Region: PRK04965
198214007879	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214007880	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214007881	Acylphosphatase; Region: Acylphosphatase; pfam00708
198214007882	[NiFe] hydrogenase maturation protein HypF; Region: hypF; TIGR00143
198214007883	HypF finger; Region: zf-HYPF; pfam07503
198214007884	HypF finger; Region: zf-HYPF; pfam07503
198214007885	Telomere recombination; Region: Sua5_yciO_yrdC; pfam01300
198214007886	formate dehydrogenase-H ferredoxin subunit; Provisional; Region: PRK10330
198214007887	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214007888	Transcriptional regulators [Transcription]; Region: PurR; COG1609
198214007889	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214007890	DNA binding site [nucleotide binding]
198214007891	domain linker motif; other site
198214007892	Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS_like; cd06270
198214007893	dimerization interface (closed form) [polypeptide binding]; other site
198214007894	ligand binding site [chemical binding]; other site
198214007895	Ni,Fe-hydrogenase III component G [Energy production and conversion]; Region: HycE; COG3262
198214007896	Ni,Fe-hydrogenase III large subunit [Energy production and conversion]; Region: HycE; COG3261
198214007897	NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]; Region: NuoD; COG0649
198214007898	Formate hydrogenlyase subunit 4 [Energy production and conversion]; Region: HyfC; COG0650
198214007899	formate hydrogenlyase subunit 3; Reviewed; Region: PRK08042
198214007900	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
198214007901	Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]; Region: HycB; COG1142
198214007902	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214007903	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214007904	formate hydrogenlyase regulatory protein HycA; Provisional; Region: PRK10198
198214007905	hydrogenase nickel incorporation protein; Validated; Region: hypA; PRK03681
198214007906	hydrogenase nickel incorporation protein HypB; Provisional; Region: PRK10463
198214007907	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
198214007908	hydrogenase assembly chaperone; Provisional; Region: PRK10409
198214007909	hydrogenase expression/formation protein HypD; Region: hypD; TIGR00075
198214007910	hydrogenase expression/formation protein HypE; Region: hypE; TIGR02124
198214007911	HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis.  HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the...; Region: HypE; cd02197
198214007912	dimerization interface [polypeptide binding]; other site
198214007913	ATP binding site [chemical binding]; other site
198214007914	formate hydrogenlyase transcriptional activator FhlA; Provisional; Region: PRK15429
198214007915	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
198214007916	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
198214007917	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214007918	Walker A motif; other site
198214007919	ATP binding site [chemical binding]; other site
198214007920	Walker B motif; other site
198214007921	arginine finger; other site
198214007922	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
198214007923	Nitrous oxide-stimulated promoter; Region: YgbA_NO; pfam11756
198214007924	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214007925	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
198214007926	MutS domain I; Region: MutS_I; pfam01624
198214007927	MutS domain II; Region: MutS_II; pfam05188
198214007928	MutS domain III; Region: MutS_III; pfam05192
198214007929	ATP-binding cassette domain of MutS1 homolog; Region: ABC_MutS1; cd03284
198214007930	Walker A/P-loop; other site
198214007931	ATP binding site [chemical binding]; other site
198214007932	Q-loop/lid; other site
198214007933	ABC transporter signature motif; other site
198214007934	Walker B; other site
198214007935	D-loop; other site
198214007936	H-loop/switch region; other site
198214007937	Similar to Escherichia coli K12 protein phosphatase 2 gi: 1789090 (219 aa). BLAST with identity of 95% in 218 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007938	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
198214007939	helix_turn_helix, Deoxyribose operon repressor; Region: HTH_DEOR; smart00420
198214007940	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214007941	Similar to Escherichia coli K12  dehydrogenase  gi: 1789092 (303 aa). BLAST with identity of 99% in 303 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214007942	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214007943	Transposase; Region: HTH_Tnp_1; pfam01527
198214007944	putative transposase OrfB; Reviewed; Region: PHA02517
198214007945	HTH-like domain; Region: HTH_21; pfam13276
198214007946	Integrase core domain; Region: rve; pfam00665
198214007947	Integrase core domain; Region: rve_3; pfam13683
198214007948	Mu DNA-binding domain; Region: HTH_Tnp_Mu_1; pfam02316
198214007949	Integrase core domain; Region: rve; pfam00665
198214007950	Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299
198214007951	Winged helix-turn-helix DNA-binding; Region: HTH_35; cl17423
198214007952	Bacteriophage CI repressor helix-turn-helix domain; Region: Phage_CI_repr; pfam07022
198214007953	3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]; Region: UbiX; COG0163
198214007954	Transcriptional regulators [Transcription]; Region: MarR; COG1846
198214007955	helix_turn_helix multiple antibiotic resistance protein; Region: HTH_MARR; smart00347
198214007956	RNA polymerase sigma factor RpoS; Validated; Region: PRK05657
198214007957	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
198214007958	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
198214007959	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
198214007960	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
198214007961	DNA binding residues [nucleotide binding]
198214007962	lipoprotein NlpD; Provisional; Region: nlpD; PRK10871
198214007963	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214007964	Peptidase family M23; Region: Peptidase_M23; pfam01551
198214007965	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214007966	S-adenosylmethionine binding site [chemical binding]; other site
198214007967	5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346
198214007968	Pseudouridine synthase, similar to Escherichia coli TruD; Region: PseudoU_synth_EcTruD; cd02575
198214007969	Permutation of conserved domain; other site
198214007970	active site
198214007971	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
198214007972	homotrimer interaction site [polypeptide binding]; other site
198214007973	zinc binding site [ion binding]; other site
198214007974	CDP-binding sites; other site
198214007975	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
198214007976	substrate binding site; other site
198214007977	dimer interface; other site
198214007978	cell division protein FtsB; Reviewed; Region: ftsB; PRK00888
198214007979	Protein of unknown function (DUF3561); Region: DUF3561; pfam12084
198214007980	Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form...; Region: APSK; cd02027
198214007981	ligand-binding site [chemical binding]; other site
198214007982	sulfate adenylyltransferase subunit 1; Provisional; Region: cysN; PRK05124
198214007983	CysN, together with protein CysD, forms the ATP sulfurylase (ATPS) complex; Region: CysN_ATPS; cd04166
198214007984	CysD dimerization site [polypeptide binding]; other site
198214007985	G1 box; other site
198214007986	putative GEF interaction site [polypeptide binding]; other site
198214007987	GTP/Mg2+ binding site [chemical binding]; other site
198214007988	Switch I region; other site
198214007989	G2 box; other site
198214007990	G3 box; other site
198214007991	Switch II region; other site
198214007992	G4 box; other site
198214007993	G5 box; other site
198214007994	CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NodQ_II; cd03695
198214007995	TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN...; Region: CysN_NoDQ_III; cd04095
198214007996	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]; Region: CysH; COG0175
198214007997	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
198214007998	Active Sites [active]
198214007999	alkaline phosphatase isozyme conversion aminopeptidase; Provisional; Region: PRK10199
198214008000	M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Region: M28; cd02690
198214008001	metal binding site [ion binding]; metal-binding site
198214008002	CRISPR/Cas system-associated protein Cas3'' Region: Cas3''_I; cd09641
198214008003	CRISPR/Cas system-associated protein Cas3; Region: Cas3_I; cd09639
198214008004	Hok/gef family; Region: HOK_GEF; pfam01848
198214008005	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]; Region: CysH; COG0175
198214008006	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
198214008007	Active Sites [active]
198214008008	sulfite reductase subunit beta; Provisional; Region: PRK13504
198214008009	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
198214008010	Nitrite and sulphite reductase 4Fe-4S domain; Region: NIR_SIR; pfam01077
198214008011	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
198214008012	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214008013	sulfite reductase subunit alpha; Provisional; Region: cysJ; PRK10953
198214008014	Flavodoxin; Region: Flavodoxin_1; pfam00258
198214008015	Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ...; Region: SiR; cd06199
198214008016	FAD binding pocket [chemical binding]; other site
198214008017	FAD binding motif [chemical binding]; other site
198214008018	catalytic residues [active]
198214008019	NAD binding pocket [chemical binding]; other site
198214008020	phosphate binding motif [ion binding]; other site
198214008021	beta-alpha-beta structure motif; other site
198214008022	6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a...; Region: PTPS; cd00470
198214008023	homohexamer interface [polypeptide binding]; other site
198214008024	putative substrate stabilizing pore; other site
198214008025	pterin binding site; other site
198214008026	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214008027	putative oxidoreductase FixC; Provisional; Region: PRK10157
198214008028	Ferredoxin-like protein [Energy production and conversion]; Region: FixX; COG2440
198214008029	Similar to Escherichia coli K12  anti-terminator regulatory protein gi: 1789127 (192 aa). BLAST with identity of 96% in 192 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214008030	Electron transfer flavoprotein, alpha subunit [Energy production and conversion]; Region: FixB; COG2025
198214008031	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
198214008032	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
198214008033	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714
198214008034	Ligand binding site [chemical binding]; other site
198214008035	Protein of unknown function (DUF2950); Region: DUF2950; pfam11453
198214008036	benzoate transport; Region: 2A0115; TIGR00895
198214008037	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008038	putative substrate translocation pore; other site
198214008039	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214008040	Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]; Region: NrdG; COG0602
198214008041	putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Region: rSAM_QueE_Ecoli; TIGR04322
198214008042	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008043	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008044	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008045	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214008046	enolase; Provisional; Region: eno; PRK00077
198214008047	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
198214008048	dimer interface [polypeptide binding]; other site
198214008049	metal binding site [ion binding]; metal-binding site
198214008050	substrate binding pocket [chemical binding]; other site
198214008051	CTP synthetase; Validated; Region: pyrG; PRK05380
198214008052	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
198214008053	Catalytic site [active]
198214008054	active site
198214008055	UTP binding site [chemical binding]; other site
198214008056	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
198214008057	active site
198214008058	putative oxyanion hole; other site
198214008059	catalytic triad [active]
198214008060	nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562
198214008061	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs; Region: NTP-PPase_MazG_Nterm; cd11528
198214008062	homodimer interface [polypeptide binding]; other site
198214008063	metal binding site [ion binding]; metal-binding site
198214008064	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs' Region: NTP-PPase_MazG_Cterm; cd11529
198214008065	homodimer interface [polypeptide binding]; other site
198214008066	active site
198214008067	putative chemical substrate binding site [chemical binding]; other site
198214008068	metal binding site [ion binding]; metal-binding site
198214008069	(p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional; Region: relA; PRK10872
198214008070	HD domain; Region: HD_4; pfam13328
198214008071	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
198214008072	synthetase active site [active]
198214008073	NTP binding site [chemical binding]; other site
198214008074	metal binding site [ion binding]; metal-binding site
198214008075	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
198214008076	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
198214008077	23S rRNA m(5)U1939 methyltransferase; Reviewed; Region: rumA; PRK13168
198214008078	TRAM domain; Region: TRAM; pfam01938
198214008079	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214008080	S-adenosylmethionine binding site [chemical binding]; other site
198214008081	hybrid sensory histidine kinase BarA; Provisional; Region: PRK11107
198214008082	Uncharacterized signal transduction histidine kinase domain (DUF2222); Region: DUF2222; pfam09984
198214008083	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214008084	dimerization interface [polypeptide binding]; other site
198214008085	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214008086	dimer interface [polypeptide binding]; other site
198214008087	phosphorylation site [posttranslational modification]
198214008088	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214008089	ATP binding site [chemical binding]; other site
198214008090	Mg2+ binding site [ion binding]; other site
198214008091	G-X-G motif; other site
198214008092	Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]; Region: COG4999
198214008093	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214008094	active site
198214008095	phosphorylation site [posttranslational modification]
198214008096	intermolecular recognition site; other site
198214008097	dimerization interface [polypeptide binding]; other site
198214008098	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
198214008099	putative binding surface; other site
198214008100	active site
198214008101	glucarate dehydratase; Region: glucar-dehydr; TIGR03247
198214008102	D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes; Region: D-glucarate_dehydratase; cd03323
198214008103	active site
198214008104	tetramer interface [polypeptide binding]; other site
198214008105	glucarate dehydratase; Region: glucar-dehydr; TIGR03247
198214008106	D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes; Region: D-glucarate_dehydratase; cd03323
198214008107	active site
198214008108	tetramer interface [polypeptide binding]; other site
198214008109	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008110	D-galactonate transporter; Region: 2A0114; TIGR00893
198214008111	putative substrate translocation pore; other site
198214008112	flavodoxin; Provisional; Region: PRK08105
198214008113	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
198214008114	tRNA pseudouridine isomerase C; Region: PseudoU_synth_TruC; cd02563
198214008115	probable active site [active]
198214008116	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3098
198214008117	SecY interacting protein Syd; Provisional; Region: PRK04968
198214008118	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2904
198214008119	7-cyano-7-deazaguanine reductase; Provisional; Region: queF; PRK11792
198214008120	Enzyme related to GTP cyclohydrolase I [General function prediction only]; Region: COG0780
198214008121	Domain of unknown function (DUF4478); Region: DUF4478; pfam14793
198214008122	Predicted Rossmann fold nucleotide-binding protein [General function prediction only]; Region: COG1611
198214008123	Domain of unknown function (DUF3412); Region: DUF3412; pfam11892
198214008124	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214008125	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214008126	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214008127	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214008128	serine transporter; Region: stp; TIGR00814
198214008129	L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720
198214008130	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
198214008131	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
198214008132	flap endonuclease-like protein; Provisional; Region: PRK09482
198214008133	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
198214008134	active site
198214008135	metal binding site 1 [ion binding]; metal-binding site
198214008136	putative 5' ssDNA interaction site; other site
198214008137	metal binding site 3; metal-binding site
198214008138	metal binding site 2 [ion binding]; metal-binding site
198214008139	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
198214008140	putative DNA binding site [nucleotide binding]; other site
198214008141	putative metal binding site [ion binding]; other site
198214008142	Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria; Region: LPO; cd08176
198214008143	dimer interface [polypeptide binding]; other site
198214008144	active site
198214008145	metal binding site [ion binding]; metal-binding site
198214008146	Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II); Region: Aldolase_II; cd00398
198214008147	intersubunit interface [polypeptide binding]; other site
198214008148	active site
198214008149	Zn2+ binding site [ion binding]; other site
198214008150	Fucose permease [Carbohydrate transport and metabolism]; Region: FucP; COG0738
198214008151	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008152	putative substrate translocation pore; other site
198214008153	L-fucose isomerase; Provisional; Region: fucI; PRK10991
198214008154	L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group...; Region: L-fucose_isomerase; cd03556
198214008155	hexamer (dimer of trimers) interface [polypeptide binding]; other site
198214008156	trimer interface [polypeptide binding]; other site
198214008157	substrate binding site [chemical binding]; other site
198214008158	Mn binding site [ion binding]; other site
198214008159	Similar to Escherichia coli K12 L-fuculokinase gi: 1789168 (483 aa). BLAST with identity of 98% in 483 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214008160	L-fucose mutarotase; Provisional; Region: fucU; PRK15420
198214008161	DNA-binding transcriptional activator FucR; Provisional; Region: PRK10411
198214008162	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
198214008163	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214008164	putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional; Region: PRK11760
198214008165	FtsJ-like methyltransferase; Region: FtsJ; pfam01728
198214008166	hypothetical protein; Provisional; Region: PRK10873
198214008167	DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139
198214008168	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214008169	The C-terminal substrate domain of LysR-type GcdR, TrPI, HvR and beta-lactamase regulators, and that of other closely related homologs; contains the type 2 periplasmic binding fold; Region: PBP2_GcdR_TrpI_HvrB_AmpR_like; cd08432
198214008170	dimerization interface [polypeptide binding]; other site
198214008171	substrate binding pocket [chemical binding]; other site
198214008172	Bacterial protein of unknown function (DUF903); Region: DUF903; pfam06004
198214008173	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
198214008174	histidinol-phosphate aminotransferase; Region: hisC; TIGR01141
198214008175	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214008176	catalytic residue [active]
198214008177	CsdA-binding activator; Provisional; Region: PRK15019
198214008178	sulfur acceptor protein CsdL; Provisional; Region: PRK15116
198214008179	Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like...; Region: YgdL_like; cd00755
198214008180	putative ATP binding site [chemical binding]; other site
198214008181	putative substrate interface [chemical binding]; other site
198214008182	murein transglycosylase A; Provisional; Region: mltA; PRK11162
198214008183	MltA specific insert domain; Region: MltA; smart00925
198214008184	3D domain; Region: 3D; pfam06725
198214008185	N-acetylmuramoyl-l-alanine amidase II; Provisional; Region: PRK10431
198214008186	AMIN domain; Region: AMIN; pfam11741
198214008187	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
198214008188	active site
198214008189	metal binding site [ion binding]; metal-binding site
198214008190	N-acetylglutamate synthase; Validated; Region: PRK05279
198214008191	AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an...; Region: AAK_NAGS-ABP; cd04237
198214008192	putative feedback inhibition sensing region; other site
198214008193	putative nucleotide binding site [chemical binding]; other site
198214008194	putative substrate binding site [chemical binding]; other site
198214008195	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214008196	Coenzyme A binding pocket [chemical binding]; other site
198214008197	exonuclease V subunit alpha; Provisional; Region: recD; PRK10875
198214008198	Helicase; Region: Helicase_RecD; pfam05127
198214008199	UvrD-like helicase C-terminal domain; Region: UvrD_C_2; pfam13538
198214008200	exonuclease V subunit beta; Provisional; Region: recB; PRK10876
198214008201	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1; pfam12705
198214008202	protease3; Provisional; Region: PRK15101
198214008203	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
198214008204	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
198214008205	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
198214008206	exonuclease V subunit gamma; Provisional; Region: recC; PRK11069
198214008207	exodeoxyribonuclease V, gamma subunit; Region: recC; TIGR01450
198214008208	hypothetical protein; Provisional; Region: PRK10332
198214008209	hypothetical protein; Provisional; Region: PRK11521
198214008210	hypothetical protein; Provisional; Region: PRK10557
198214008211	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; pfam13544
198214008212	Similar to Escherichia coli K12 prepilin peptidase dependent protein A gi: 1789190 (157 aa). BLAST with identity of 99% in 156 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214008213	Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351
198214008214	dimerization interface [polypeptide binding]; other site
198214008215	active site
198214008216	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
198214008217	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional; Region: PRK11061
198214008218	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
198214008219	PEP-utilizing enzyme, N-terminal; Region: PEP-utilizers_N; pfam05524
198214008220	PEP-utilizing enzyme, mobile domain; Region: PEP-utilizers; pfam00391
198214008221	PEP-utilizing enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
198214008222	Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant...; Region: Ap4A_hydrolase_plant_like; cd03671
198214008223	putative active site [active]
198214008224	Ap4A binding site [chemical binding]; other site
198214008225	nudix motif; other site
198214008226	putative metal binding site [ion binding]; other site
198214008227	MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex.   MutH...; Region: MutH_Sau3AI; cd00583
198214008228	putative DNA-binding cleft [nucleotide binding]; other site
198214008229	putative DNA clevage site; other site
198214008230	molecular lever; other site
198214008231	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
198214008232	Bacterial protein of unknown function (DUF903); Region: DUF903; pfam06004
198214008233	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214008234	voltage-dependent potassium channel beta subunit, animal; Region: Kv_beta; TIGR01293
198214008235	active site
198214008236	catalytic tetrad [active]
198214008237	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008238	putative substrate translocation pore; other site
198214008239	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated; Region: PRK08043
198214008240	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
198214008241	putative acyl-acceptor binding pocket; other site
198214008242	C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas); Region: AAS_C; cd05909
198214008243	acyl-activating enzyme (AAE) consensus motif; other site
198214008244	putative AMP binding site [chemical binding]; other site
198214008245	DNA-binding transcriptional regulator GalR; Provisional; Region: PRK10727
198214008246	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214008247	DNA binding site [nucleotide binding]
198214008248	domain linker motif; other site
198214008249	Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS_like; cd06270
198214008250	dimerization interface (closed form) [polypeptide binding]; other site
198214008251	ligand binding site [chemical binding]; other site
198214008252	diaminopimelate decarboxylase; Provisional; Region: PRK11165
198214008253	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828
198214008254	active site
198214008255	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
198214008256	substrate binding site [chemical binding]; other site
198214008257	catalytic residues [active]
198214008258	dimer interface [polypeptide binding]; other site
198214008259	DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013
198214008260	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214008261	The C-terminal substrate binding domain of LysR, transcriptional regulator for lysine biosynthesis, contains the type 2 periplasmic binding fold; Region: PBP2_LysR; cd08456
198214008262	putative dimerization interface [polypeptide binding]; other site
198214008263	putative racemase; Provisional; Region: PRK10200
198214008264	MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879
198214008265	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008266	putative substrate translocation pore; other site
198214008267	2-deoxy-D-gluconate 3-dehydrogenase; Validated; Region: PRK08993
198214008268	gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Region: Ga5DH-like_SDR_c; cd05347
198214008269	NADP binding site [chemical binding]; other site
198214008270	homodimer interface [polypeptide binding]; other site
198214008271	active site
198214008272	5-keto-4-deoxyuronate isomerase; Provisional; Region: PRK00924
198214008273	putative acyltransferase; Provisional; Region: PRK05790
198214008274	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
198214008275	dimer interface [polypeptide binding]; other site
198214008276	active site
198214008277	Transposase; Region: HTH_Tnp_1; cl17663
198214008278	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008279	putative transposase OrfB; Reviewed; Region: PHA02517
198214008280	HTH-like domain; Region: HTH_21; pfam13276
198214008281	Integrase core domain; Region: rve; pfam00665
198214008282	Integrase core domain; Region: rve_2; pfam13333
198214008283	Protein of unknown function (DUF1682); Region: DUF1682; pfam07946
198214008284	Phage regulatory protein Rha (Phage_pRha); Region: Phage_pRha; pfam09669
198214008285	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008286	Transposase; Region: HTH_Tnp_1; cl17663
198214008287	INT_SG2, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 2, C-terminal catalytic domain. The CD contains mainly predicted integrase/recombinases and phage-related integrases. Some have N-terminal domains, which show little sequence...; Region: INT_SG2_C; cd01184
198214008288	Int/Topo IB signature motif; other site
198214008289	lipoprotein NlpD; Provisional; Region: nlpD; PRK10871
198214008290	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
198214008291	Peptidase family M23; Region: Peptidase_M23; pfam01551
198214008292	xanthine dehydrogenase subunit XdhA; Provisional; Region: PRK09970
198214008293	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; pfam01315
198214008294	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
198214008295	xanthine dehydrogenase subunit XdhB; Provisional; Region: PRK09971
198214008296	FAD binding domain in molybdopterin dehydrogenase; Region: FAD_binding_5; pfam00941
198214008297	CO dehydrogenase flavoprotein C-terminal domain; Region: CO_deh_flav_C; pfam03450
198214008298	xanthine dehydrogenase subunit XdhC; Provisional; Region: PRK09908
198214008299	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
198214008300	catalytic loop [active]
198214008301	iron binding site [ion binding]; other site
198214008302	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
198214008303	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008304	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008305	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008306	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214008307	HTH-like domain; Region: HTH_21; pfam13276
198214008308	Integrase core domain; Region: rve; pfam00665
198214008309	Integrase core domain; Region: rve_3; pfam13683
198214008310	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214008311	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008312	Sulfate transporter family; Region: Sulfate_transp; cl19250
198214008313	xanthine permease; Region: pbuX; TIGR03173
198214008314	Isopentenyldiphosphate isomerase [Lipid metabolism]; Region: Idi; COG1443
198214008315	Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated...; Region: IPP_Isomerase; cd02885
198214008316	active site
198214008317	metal binding site [ion binding]; metal-binding site
198214008318	nudix motif; other site
198214008319	lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484
198214008320	LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop; Region: LysRS_N; cd04322
198214008321	dimer interface [polypeptide binding]; other site
198214008322	putative anticodon binding site; other site
198214008323	Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775
198214008324	motif 1; other site
198214008325	active site
198214008326	motif 2; other site
198214008327	motif 3; other site
198214008328	peptide chain release factor 2; Provisional; Region: PRK08787
198214008329	This domain is found in peptide chain release factors; Region: PCRF; smart00937
198214008330	RF-1 domain; Region: RF-1; pfam00472
198214008331	ssDNA exonuclease RecJ; Provisional; Region: PRK11070
198214008332	DHH family; Region: DHH; pfam01368
198214008333	DHHA1 domain; Region: DHHA1; pfam02272
198214008334	protein disulfide isomerase II DsbC; Provisional; Region: PRK10877
198214008335	DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds...; Region: DsbA_DsbC_DsbG; cd03020
198214008336	dimerization domain [polypeptide binding]; other site
198214008337	dimer interface [polypeptide binding]; other site
198214008338	catalytic residues [active]
198214008339	site-specific tyrosine recombinase XerD; Reviewed; Region: xerD; PRK00283
198214008340	XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination...; Region: INT_XerDC; cd00798
198214008341	active site
198214008342	Int/Topo IB signature motif; other site
198214008343	flavodoxin FldB; Provisional; Region: PRK12359
198214008344	Protein of unknown function (DUF1434); Region: DUF1434; pfam07254
198214008345	hypothetical protein; Provisional; Region: PRK10878
198214008346	putative global regulator; Reviewed; Region: PRK09559
198214008347	Aminomethyltransferase folate-binding domain; Region: GCV_T; pfam01571
198214008348	folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317
198214008349	hemolysin; Provisional; Region: PRK15087
198214008350	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789267 (104 aa). BLAST with identity of 98% in 103 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214008351	6-phospho-beta-glucosidase BglA; Provisional; Region: PRK15014
198214008352	Glycosyl hydrolase family 1; Region: Glyco_hydro_1; pfam00232
198214008353	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05653
198214008354	classical (c) SDRs; Region: SDR_c; cd05233
198214008355	NAD(P) binding site [chemical binding]; other site
198214008356	active site
198214008357	glycine dehydrogenase; Provisional; Region: PRK05367
198214008358	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
198214008359	tetramer interface [polypeptide binding]; other site
198214008360	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214008361	catalytic residue [active]
198214008362	Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1; Region: GDC-P; cd00613
198214008363	tetramer interface [polypeptide binding]; other site
198214008364	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214008365	catalytic residue [active]
198214008366	Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and...; Region: GCS_H; cd06848
198214008367	lipoyl attachment site [posttranslational modification]; other site
198214008368	glycine cleavage system aminomethyltransferase T; Reviewed; Region: gcvT; PRK00389
198214008369	Aminomethyltransferase folate-binding domain; Region: GCV_T; pfam01571
198214008370	Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669
198214008371	oxidoreductase; Provisional; Region: PRK08013
198214008372	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Region: Ubi-OHases; TIGR01988
198214008373	2-octaprenyl-6-methoxyphenyl hydroxylase; Validated; Region: PRK05732
198214008374	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; Region: Ubi-OHases; TIGR01988
198214008375	proline aminopeptidase P II; Provisional; Region: PRK10879
198214008376	Aminopeptidase P, N-terminal domain; Region: AMP_N; pfam05195
198214008377	Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on...; Region: Prolidase; cd01087
198214008378	active site
198214008379	hypothetical protein; Reviewed; Region: PRK01736
198214008380	Z-ring-associated protein; Provisional; Region: PRK10972
198214008381	5-formyltetrahydrofolate cyclo-ligase family protein; Provisional; Region: PRK10333
198214008382	D-3-phosphoglycerate dehydrogenase; Provisional; Region: PRK11790
198214008383	Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Region: PGDH_3; cd12176
198214008384	ligand binding site [chemical binding]; other site
198214008385	NAD binding site [chemical binding]; other site
198214008386	tetramer interface [polypeptide binding]; other site
198214008387	catalytic site [active]
198214008388	C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria; Region: ACT_3PGDH; cd04901
198214008389	L-serine binding site [chemical binding]; other site
198214008390	ACT domain interface; other site
198214008391	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
198214008392	tetramer (dimer of dimers) interface [polypeptide binding]; other site
198214008393	active site
198214008394	dimer interface [polypeptide binding]; other site
198214008395	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789281 (77 aa). BLAST with identity of 97% in 61 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214008396	chromosome replication initiation inhibitor protein; Validated; Region: PRK03635
198214008397	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214008398	The C-terminal substrate binding domain of LysR-type transcriptional regulator, ArgP (IciA), for arginine exporter (ArgO); contains the type 2 periplasmic binding fold; Region: PBP2_IciA_ArgP; cd08428
198214008399	putative dimerization interface [polypeptide binding]; other site
198214008400	methylmalonyl-CoA mutase; Reviewed; Region: PRK09426
198214008401	Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily contain...; Region: MM_CoA_mutase_alpha_like; cd03679
198214008402	active site
198214008403	substrate binding site [chemical binding]; other site
198214008404	coenzyme B12 binding site [chemical binding]; other site
198214008405	methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom...; Region: MM_CoA_mut_B12_BD; cd02071
198214008406	B12 binding site [chemical binding]; other site
198214008407	cobalt ligand [ion binding]; other site
198214008408	LAO/AO transport system ATPase; Region: lao; TIGR00750
198214008409	The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and...; Region: ArgK-like; cd03114
198214008410	Walker A; other site
198214008411	methylmalonyl-CoA decarboxylase; Provisional; Region: PRK11423
198214008412	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
198214008413	substrate binding site [chemical binding]; other site
198214008414	oxyanion hole (OAH) forming residues; other site
198214008415	trimer interface [polypeptide binding]; other site
198214008416	Similar to Escherichia coli K12  coenzyme A transferase gi: 1789287 (493 aa). BLAST with identity of 98% in 493 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214008417	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214008418	Transcriptional regulator [Transcription]; Region: LysR; COG0583
198214008419	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
198214008420	dimerization interface [polypeptide binding]; other site
198214008421	oxidative stress defense protein; Provisional; Region: PRK11087
198214008422	arginine exporter protein; Provisional; Region: PRK09304
198214008423	mechanosensitive channel MscS; Provisional; Region: PRK10334
198214008424	Conserved TM helix; Region: TM_helix; pfam05552
198214008425	Mechanosensitive ion channel; Region: MS_channel; pfam00924
198214008426	Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is...; Region: FBP_aldolase_IIA; cd00946
198214008427	active site
198214008428	intersubunit interface [polypeptide binding]; other site
198214008429	zinc binding site [ion binding]; other site
198214008430	Na+ binding site [ion binding]; other site
198214008431	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
198214008432	substrate binding site [chemical binding]; other site
198214008433	hinge regions; other site
198214008434	ADP binding site [chemical binding]; other site
198214008435	catalytic site [active]
198214008436	erythrose 4-phosphate dehydrogenase; Provisional; Region: PRK13535
198214008437	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
198214008438	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
198214008439	Domain of unknown function found in archaea, bacteria, and plants; Region: DUF296; cd11378
198214008440	trimer interface [polypeptide binding]; other site
198214008441	putative Zn binding site [ion binding]; other site
198214008442	Protein of unknown function (DUF3816); Region: DUF3816; pfam12822
198214008443	Similar to Escherichia coli O157:H7 EDL933 conserved hypothetical protein ref: NP_289497.1 (235 aa). BLAST with identity of 97% in 236 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214008444	ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122
198214008445	First domain of the ATP-binding cassette component of cobalt transport system; Region: ABC_cobalt_CbiO_domain1; cd03225
198214008446	Walker A/P-loop; other site
198214008447	ATP binding site [chemical binding]; other site
198214008448	Q-loop/lid; other site
198214008449	ABC transporter signature motif; other site
198214008450	Walker B; other site
198214008451	D-loop; other site
198214008452	H-loop/switch region; other site
198214008453	ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122
198214008454	First domain of the ATP-binding cassette component of cobalt transport system; Region: ABC_cobalt_CbiO_domain1; cd03225
198214008455	Walker A/P-loop; other site
198214008456	ATP binding site [chemical binding]; other site
198214008457	Q-loop/lid; other site
198214008458	ABC transporter signature motif; other site
198214008459	Walker B; other site
198214008460	D-loop; other site
198214008461	H-loop/switch region; other site
198214008462	nucleoside triphosphate hydrolase domain-containing protein; Reviewed; Region: PRK09270
198214008463	active site
198214008464	putative DNA-binding transcriptional regulator; Provisional; Region: PRK10022
198214008465	L-sorbose-1-phosphate reductase; Region: sorbose_phosphate_red; cd08238
198214008466	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
198214008467	putative NAD(P) binding site [chemical binding]; other site
198214008468	catalytic Zn binding site [ion binding]; other site
198214008469	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214008470	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008471	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008472	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008473	prohibitin homologues; Region: PHB; smart00244
198214008474	Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; Region: SPFH_prohibitin; cd03401
198214008475	transketolase; Reviewed; Region: PRK12753
198214008476	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
198214008477	TPP-binding site [chemical binding]; other site
198214008478	dimer interface [polypeptide binding]; other site
198214008479	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
198214008480	PYR/PP interface [polypeptide binding]; other site
198214008481	dimer interface [polypeptide binding]; other site
198214008482	TPP binding site [chemical binding]; other site
198214008483	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
198214008484	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
198214008485	Agmatinase-like family includes proclavaminic acid amidinohydrolase; Region: Agmatinase_PAH; cd11592
198214008486	oligomer interface [polypeptide binding]; other site
198214008487	putative active site [active]
198214008488	Mn binding site [ion binding]; other site
198214008489	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214008490	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008491	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008492	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008493	Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]; Region: SpeA; COG1166
198214008494	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase; Region: PLPDE_III_ADC; cd06830
198214008495	dimer interface [polypeptide binding]; other site
198214008496	active site
198214008497	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
198214008498	catalytic residues [active]
198214008499	substrate binding site [chemical binding]; other site
198214008500	Virulence promoting factor; Region: YqgB; pfam11036
198214008501	Protein of unknown function (DUF2684); Region: DUF2684; pfam10885
198214008502	S-adenosylmethionine synthetase; Validated; Region: PRK05250
198214008503	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
198214008504	S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772
198214008505	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
198214008506	MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879
198214008507	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008508	putative substrate translocation pore; other site
198214008509	hypothetical protein; Provisional; Region: PRK04860
198214008510	DNA-specific endonuclease I; Provisional; Region: PRK15137
198214008511	RNA methyltransferase, RsmE family; Region: TIGR00046
198214008512	glutathione synthetase; Provisional; Region: PRK05246
198214008513	Prokaryotic glutathione synthetase, N-terminal domain; Region: GSH-S_N; pfam02951
198214008514	Prokaryotic glutathione synthetase, ATP-grasp domain; Region: GSH-S_ATP; pfam02955
198214008515	hypothetical protein; Validated; Region: PRK00228
198214008516	Holliday junction resolvase-like protein; Reviewed; Region: PRK00109
198214008517	Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism...; Region: PilT; cd01131
198214008518	Walker A motif; other site
198214008519	ATP binding site [chemical binding]; other site
198214008520	Walker B motif; other site
198214008521	Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824
198214008522	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
198214008523	catalytic residue [active]
198214008524	YGGT family; Region: YGGT; pfam02325
198214008525	Predicted integral membrane protein [Function unknown]; Region: COG0762
198214008526	hypothetical protein; Validated; Region: PRK05090
198214008527	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
198214008528	active site
198214008529	dimerization interface [polypeptide binding]; other site
198214008530	HemN family oxidoreductase; Provisional; Region: PRK05660
198214008531	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214008532	FeS/SAM binding site; other site
198214008533	HemN C-terminal domain; Region: HemN_C; pfam06969
198214008534	SI#48
198214008535	TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]; Region: DctM; COG3090
198214008536	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214008537	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008538	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008539	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008540	DctM-like transporters; Region: DctM; pfam06808
198214008541	TRAP transporter, DctM subunit; Region: dctM; TIGR00786
198214008542	Protein of unknown function (DUF1202); Region: DUF1202; pfam06717
198214008543	Bacterial L-asparaginases and related enzymes; Region: L-asparaginase_like; cd00411
198214008544	active site
198214008545	homodimer interface [polypeptide binding]; other site
198214008546	hypothetical protein; Provisional; Region: PRK10626
198214008547	hypothetical protein; Provisional; Region: PRK11702
198214008548	Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]; Region: COG0220
198214008549	adenine DNA glycosylase; Provisional; Region: PRK10880
198214008550	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
198214008551	minor groove reading motif; other site
198214008552	helix-hairpin-helix signature motif; other site
198214008553	substrate binding pocket [chemical binding]; other site
198214008554	active site
198214008555	iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3); Region: FES; smart00525
198214008556	DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431
198214008557	DNA binding and oxoG recognition site [nucleotide binding]
198214008558	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2924
198214008559	murein transglycosylase C; Provisional; Region: mltC; PRK11671
198214008560	Domain of unknown function (DUF3393); Region: DUF3393; pfam11873
198214008561	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214008562	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214008563	catalytic residue [active]
198214008564	nucleoside transporter; Region: 2A0110; TIGR00889
198214008565	Nucleoside H+ symporter; Region: Nuc_H_symport; pfam03825
198214008566	ornithine decarboxylase; Provisional; Region: PRK13578
198214008567	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
198214008568	Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine...; Region: Orn_deC_like; cd00615
198214008569	homodimer interface [polypeptide binding]; other site
198214008570	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214008571	catalytic residue [active]
198214008572	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
198214008573	Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]; Region: COG1811
198214008574	integrase; Provisional; Region: PRK09692
198214008575	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
198214008576	active site
198214008577	Int/Topo IB signature motif; other site
198214008578	replicative DNA helicase; Provisional; Region: PRK05973
198214008579	Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]; Region: COG1112
198214008580	AAA domain; Region: AAA_12; pfam13087
198214008581	C-terminal domain of Escherichia coli uncharacterized protein yjhR and similar proteins; Region: PLDc_yjhR_C_like; cd09118
198214008582	putative active site [active]
198214008583	catalytic site [active]
198214008584	F plasmid transfer operon, TraF, protein; Region: TraF_2; pfam13729
198214008585	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
198214008586	Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395
198214008587	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
198214008588	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214008589	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214008590	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214008591	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214008592	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3464
198214008593	Transposase; Region: DDE_Tnp_ISL3; pfam01610
198214008594	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214008595	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214008596	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
198214008597	Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395
198214008598	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
198214008599	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214008600	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214008601	Retron-type reverse transcriptase [DNA replication, recombination, and repair]; Region: COG3344
198214008602	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
198214008603	putative active site [active]
198214008604	putative NTP binding site [chemical binding]; other site
198214008605	putative nucleic acid binding site [nucleotide binding]; other site
198214008606	Group II intron, maturase-specific domain; Region: GIIM; pfam08388
198214008607	Transposase; Region: HTH_Tnp_1; cl17663
198214008608	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008609	Protein of unknown function (DUF3279); Region: DUF3279; pfam11682
198214008610	Protein of unknown function (DUF3279); Region: DUF3279; pfam11682
198214008611	Protein of unknown function (DUF3296); Region: DUF3296; pfam11726
198214008612	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214008613	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214008614	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008615	insertion element IS2 transposase InsD; Provisional; Region: PRK14702
198214008616	HTH-like domain; Region: HTH_21; pfam13276
198214008617	Integrase core domain; Region: rve; pfam00665
198214008618	Integrase core domain; Region: rve_3; pfam13683
198214008619	Predicted transcriptional regulator [Transcription]; Region: AlpA; COG3311
198214008620	Replication regulatory protein RepB; Region: RepB-RCR_reg; cl11673
198214008621	Predicted GTPase [General function prediction only]; Region: COG3596
198214008622	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214008623	YfjP GTPase; Region: YfjP; cd11383
198214008624	G1 box; other site
198214008625	GTP/Mg2+ binding site [chemical binding]; other site
198214008626	Switch I region; other site
198214008627	G2 box; other site
198214008628	Switch II region; other site
198214008629	G3 box; other site
198214008630	G4 box; other site
198214008631	G5 box; other site
198214008632	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
198214008633	Type V secretory pathway, adhesin AidA [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: AidA; COG3468
198214008634	hypothetical protein; Provisional; Region: PRK09945
198214008635	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
198214008636	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214008637	Autotransporter beta-domain; Region: Autotransporter; smart00869
198214008638	Domain of unknown function (DUF932); Region: DUF932; pfam06067
198214008639	Antirestriction protein; Region: Antirestrict; pfam03230
198214008640	DNA repair proteins [DNA replication, recombination, and repair]; Region: RadC; COG2003
198214008641	Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071
198214008642	MPN+ (JAMM) motif; other site
198214008643	Zinc-binding site [ion binding]; other site
198214008644	Protein of unknown function (DUF987); Region: DUF987; pfam06174
198214008645	YagB/YeeU/YfjZ family; Region: YagB_YeeU_YfjZ; pfam06154
198214008646	Protein of unknown function (DUF1219); Region: DUF1219; pfam06755
198214008647	Enterobacterial protein of unknown function (DUF957); Region: DUF957; pfam06117
198214008648	Methyltransferase domain; Region: Methyltransf_27; pfam13708
198214008649	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214008650	Transposase; Region: HTH_Tnp_1; cl17663
198214008651	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008652	putative transposase OrfB; Reviewed; Region: PHA02517
198214008653	HTH-like domain; Region: HTH_21; pfam13276
198214008654	Integrase core domain; Region: rve; pfam00665
198214008655	Integrase core domain; Region: rve_2; pfam13333
198214008656	Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: CpaA; COG4960
198214008657	Flp/Fap pilin component; Region: Flp_Fap; pfam04964
198214008658	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cl17355
198214008659	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
198214008660	DNA binding site [nucleotide binding]
198214008661	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008662	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008663	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008664	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008665	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008666	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008667	Malate synthase G (MSG), monomeric enzyme present in some bacteria. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate...; Region: malate_synt_G; cd00728
198214008668	active site
198214008669	hypothetical protein; Provisional; Region: PRK09732
198214008670	Similar to Escherichia coli K12 glycolate oxidase iron-sulfur subunit gi: 1789350 (762 aa). BLAST with identity of 98% in 760 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214008671	glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282
198214008672	FAD binding domain; Region: FAD_binding_4; pfam01565
198214008673	Similar to Escherichia coli K12 glycolate oxidase subunit D gi: 1789351 (500 aa). BLAST with identity of 98% in 497 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214008674	DNA-binding transcriptional regulator GlcC; Provisional; Region: PRK09990
198214008675	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214008676	DNA-binding site [nucleotide binding]; DNA binding site
198214008677	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214008678	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789354 (391 aa). BLAST with identity of 99% in 367 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214008679	acyl-CoA synthetase; Validated; Region: PRK09192
198214008680	Fatty acyl-AMP ligase (FAAL); Region: FAAL; cd05931
198214008681	acyl-activating enzyme (AAE) consensus motif; other site
198214008682	active site
198214008683	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
198214008684	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
198214008685	NAD(P) binding site [chemical binding]; other site
198214008686	active site
198214008687	Phosphopantetheine attachment site; Region: PP-binding; pfam00550
198214008688	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945
198214008689	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
198214008690	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
198214008691	Bacterial protein of unknown function (YtfJ_HI0045); Region: YtfJ_HI0045; pfam09695
198214008692	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
198214008693	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
198214008694	Thymidylate kinase [Nucleotide transport and metabolism]; Region: Tmk; COG0125
198214008695	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
198214008696	active site
198214008697	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
198214008698	thymidylate kinase; Region: DTMP_kinase; TIGR00041
198214008699	TMP-binding site; other site
198214008700	ATP-binding site [chemical binding]; other site
198214008701	Thymidylate kinase [Nucleotide transport and metabolism]; Region: Tmk; COG0125
198214008702	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
198214008703	TMP-binding site; other site
198214008704	ATP-binding site [chemical binding]; other site
198214008705	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
198214008706	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional; Region: PRK10507
198214008707	CHAP domain; Region: CHAP; pfam05257
198214008708	Glutathionylspermidine synthase [Amino acid transport and metabolism]; Region: Gsp; COG0754
198214008709	putative S-transferase; Provisional; Region: PRK11752
198214008710	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
198214008711	C-terminal domain interface [polypeptide binding]; other site
198214008712	GSH binding site (G-site) [chemical binding]; other site
198214008713	dimer interface [polypeptide binding]; other site
198214008714	C-terminal, alpha helical domain of Escherichia coli Yghu Glutathione S-transferases and related uncharacterized proteins; Region: GST_C_YghU_like; cd10292
198214008715	dimer interface [polypeptide binding]; other site
198214008716	N-terminal domain interface [polypeptide binding]; other site
198214008717	active site
198214008718	hydrogenase 2 accessory protein HypG; Provisional; Region: PRK10413
198214008719	hydrogenase nickel incorporation protein HybF; Provisional; Region: PRK12380
198214008720	hydrogenase 2-specific chaperone; Provisional; Region: PRK10465
198214008721	coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit); Region: frhD; TIGR00130
198214008722	Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD...; Region: H2MP_MemB-H2up; cd06062
198214008723	putative substrate-binding site; other site
198214008724	nickel binding site [ion binding]; other site
198214008725	hydrogenase 2 large subunit; Provisional; Region: PRK10467
198214008726	putative hydrogenase 2 b cytochrome subunit; Provisional; Region: PRK10881
198214008727	hydrogenase 2 protein HybA; Provisional; Region: PRK10882
198214008728	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214008729	hydrogenase 2 small subunit; Provisional; Region: PRK10468
198214008730	Tat (twin-arginine translocation) pathway signal sequence; Region: TAT_signal_seq; TIGR01409
198214008731	NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; pfam01058
198214008732	NiFe/NiFeSe hydrogenase small subunit C-terminal; Region: NiFe_hyd_SSU_C; pfam14720
198214008733	Protein of unknown function (DUF2623); Region: DUF2623; pfam11115
198214008734	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
198214008735	Prolyl oligopeptidase family; Region: Peptidase_S9; cl19144
198214008736	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214008737	voltage-dependent potassium channel beta subunit, animal; Region: Kv_beta; TIGR01293
198214008738	active site
198214008739	catalytic tetrad [active]
198214008740	hypothetical protein; Provisional; Region: PRK05208
198214008741	oxidoreductase; Provisional; Region: PRK07985
198214008742	classical (c) SDR, subgroup 1; Region: SDR_c1; cd05355
198214008743	NAD binding site [chemical binding]; other site
198214008744	metal binding site [ion binding]; metal-binding site
198214008745	active site
198214008746	biopolymer transport protein ExbD; Provisional; Region: PRK11267
198214008747	biopolymer transport protein ExbB; Provisional; Region: PRK10414
198214008748	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
198214008749	homodimer interface [polypeptide binding]; other site
198214008750	substrate-cofactor binding pocket; other site
198214008751	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214008752	catalytic residue [active]
198214008753	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
198214008754	AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719
198214008755	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
198214008756	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214008757	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214008758	Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process; Region: BDH; cd08187
198214008759	dimer interface [polypeptide binding]; other site
198214008760	active site
198214008761	metal binding site [ion binding]; metal-binding site
198214008762	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
198214008763	active site
198214008764	catalytic tetrad [active]
198214008765	Protein of unknown function (DUF3828); Region: DUF3828; pfam12883
198214008766	putative outer membrane lipoprotein; Provisional; Region: PRK09973
198214008767	hypothetical protein; Provisional; Region: PRK01254
198214008768	Radical SAM N-terminal; Region: Radical_SAM_N; pfam08497
198214008769	Elongator protein 3, MiaB family, Radical SAM; Region: Elp3; smart00729
198214008770	Domain of unknown function (DUF3362); Region: DUF3362; pfam11842
198214008771	FtsI repressor; Provisional; Region: PRK10883
198214008772	The first Cupredoxin domain of the multicopper oxidase CueO, the cell division protein FtsP, and similar proteins; Region: CuRO_1_CueO_FtsP; cd04232
198214008773	Domain 2 interface [polypeptide binding]; other site
198214008774	Domain 3 interface [polypeptide binding]; other site
198214008775	trinuclear Cu binding site [ion binding]; other site
198214008776	The second Cupredoxin domain of the multicopper oxidase CueO, the cell division protein FtsP, and similar proteins; Region: CuRO_2_CueO_FtsP; cd13867
198214008777	Domain 1 interface [polypeptide binding]; other site
198214008778	Domain 3 interface [polypeptide binding]; other site
198214008779	The third Cupredoxin domain of the multicopper oxidase CueO, the cell division protein FtsP, and similar proteins; Region: CuRO_3_CueO_FtsP; cd13890
198214008780	Domain 2 interface [polypeptide binding]; other site
198214008781	Domain 1 interface [polypeptide binding]; other site
198214008782	Type 1 (T1) Cu binding site [ion binding]; other site
198214008783	trinuclear Cu binding site [ion binding]; other site
198214008784	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
198214008785	putative acyl-acceptor binding pocket; other site
198214008786	DNA topoisomerase IV, A subunit, proteobacterial; Region: parC_Gneg; TIGR01062
198214008787	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
198214008788	CAP-like domain; other site
198214008789	active site
198214008790	primary dimer interface [polypeptide binding]; other site
198214008791	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
198214008792	DNA gyrase inhibitor [DNA replication, recombination, and repair]; Region: COG3449
198214008793	TIGR00156 family protein; Region: TIGR00156
198214008794	DNA-binding transcriptional regulator QseB; Provisional; Region: PRK10336
198214008795	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214008796	active site
198214008797	phosphorylation site [posttranslational modification]
198214008798	intermolecular recognition site; other site
198214008799	dimerization interface [polypeptide binding]; other site
198214008800	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214008801	DNA binding site [nucleotide binding]
198214008802	sensor protein QseC; Provisional; Region: PRK10337
198214008803	HAMP domain; Region: HAMP; pfam00672
198214008804	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214008805	dimer interface [polypeptide binding]; other site
198214008806	phosphorylation site [posttranslational modification]
198214008807	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214008808	ATP binding site [chemical binding]; other site
198214008809	G-X-G motif; other site
198214008810	Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]; Region: MdaB; COG2249
198214008811	Uncharacterized conserved protein [Function unknown]; Region: COG1359
198214008812	DNA topoisomerase IV, B subunit, proteobacterial; Region: parE_Gneg; TIGR01055
198214008813	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214008814	ATP binding site [chemical binding]; other site
198214008815	Mg2+ binding site [ion binding]; other site
198214008816	G-X-G motif; other site
198214008817	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
198214008818	anchoring element; other site
198214008819	dimer interface [polypeptide binding]; other site
198214008820	ATP binding site [chemical binding]; other site
198214008821	Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from...; Region: TOPRIM; cl00718
198214008822	active site
198214008823	metal binding site [ion binding]; metal-binding site
198214008824	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
198214008825	esterase YqiA; Provisional; Region: PRK11071
198214008826	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
198214008827	Predicted phosphohydrolases [General function prediction only]; Region: Icc; COG1409
198214008828	Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain; Region: MPP_GpdQ; cd07402
198214008829	active site
198214008830	metal binding site [ion binding]; metal-binding site
198214008831	hexamer interface [polypeptide binding]; other site
198214008832	putative dehydrogenase; Provisional; Region: PRK11039
198214008833	ADP-ribose pyrophosphatase NudF; Provisional; Region: nudF; PRK10729
198214008834	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
198214008835	dimer interface [polypeptide binding]; other site
198214008836	ADP-ribose binding site [chemical binding]; other site
198214008837	active site
198214008838	nudix motif; other site
198214008839	metal binding site [ion binding]; metal-binding site
198214008840	outer membrane channel protein; Reviewed; Region: tolC; PRK09465
198214008841	Outer membrane efflux protein; Region: OEP; pfam02321
198214008842	Outer membrane efflux protein; Region: OEP; pfam02321
198214008843	hypothetical protein; Provisional; Region: PRK11653
198214008844	Glutathionylspermidine synthase [Amino acid transport and metabolism]; Region: Gsp; COG0754
198214008845	The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine; Region: 45_DOPA_Dioxygenase; cd07363
198214008846	putative active site [active]
198214008847	metal binding site [ion binding]; metal-binding site
198214008848	zinc transporter ZupT; Provisional; Region: PRK04201
198214008849	Protein of unknown function (DUF4051); Region: DUF4051; pfam13260
198214008850	3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional; Region: ribB; PRK03353
198214008851	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2960
198214008852	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214008853	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214008854	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214008855	HTH-like domain; Region: HTH_21; pfam13276
198214008856	Integrase core domain; Region: rve; pfam00665
198214008857	Integrase core domain; Region: rve_3; pfam13683
198214008858	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008859	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008860	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214008861	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214008862	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789427 (355 aa). BLAST with identity of 95% in 108 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214008863	glycogen synthesis protein GlgS; Provisional; Region: PRK02922
198214008864	Similar to Escherichia coli K12  membrane protein gi: 1789430 (554 aa). BLAST with identity of 96% in 303 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214008865	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional; Region: PRK11316
198214008866	RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172
198214008867	putative ribose interaction site [chemical binding]; other site
198214008868	putative ADP binding site [chemical binding]; other site
198214008869	rfaE bifunctional protein, domain II; Region: rfaE_dom_II; TIGR02199
198214008870	active site
198214008871	nucleotide binding site [chemical binding]; other site
198214008872	HIGH motif; other site
198214008873	KMSKS motif; other site
198214008874	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Reviewed; Region: PRK11072
198214008875	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
198214008876	metal binding triad; other site
198214008877	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; pfam08335
198214008878	Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins; Region: NT_GlnE_GlnD_like; cd05401
198214008879	metal binding triad; other site
198214008880	GlnD PII-uridylyltransferase; Region: GlnD_UR_UTase; cl19627
198214008881	Uncharacterized conserved protein [Function unknown]; Region: COG3025
198214008882	Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain; Region: CYTH-like_Pase_CHAD; cd07756
198214008883	putative active site [active]
198214008884	putative metal binding residues [ion binding]; other site
198214008885	signature motif; other site
198214008886	putative triphosphate binding site [ion binding]; other site
198214008887	CHAD domain; Region: CHAD; pfam05235
198214008888	SH3 domain-containing protein; Provisional; Region: PRK10884
198214008889	Protein of unknown function (DUF1202); Region: DUF1202; pfam06717
198214008890	Bacterial SH3 domain homologues; Region: SH3b; smart00287
198214008891	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed; Region: cca; PRK10885
198214008892	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
198214008893	active site
198214008894	NTP binding site [chemical binding]; other site
198214008895	metal binding triad [ion binding]; metal-binding site
198214008896	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
198214008897	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
198214008898	Zn2+ binding site [ion binding]; other site
198214008899	Mg2+ binding site [ion binding]; other site
198214008900	undecaprenyl pyrophosphate phosphatase; Reviewed; Region: PRK00281
198214008901	Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and...; Region: DHNA_DHNTPE; cd00534
198214008902	homooctamer interface [polypeptide binding]; other site
198214008903	active site
198214008904	putative glycerol-3-phosphate acyltransferase PlsY; Provisional; Region: PRK00220
198214008905	transcriptional activator TtdR; Provisional; Region: PRK09801
198214008906	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214008907	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479
198214008908	putative effector binding pocket; other site
198214008909	putative dimerization interface [polypeptide binding]; other site
198214008910	tartrate dehydratase subunit alpha; Validated; Region: PRK08230
198214008911	L(+)-tartrate dehydratase subunit beta; Validated; Region: PRK08228
198214008912	Sodium:sulfate symporter transmembrane region; Region: Na_sulph_symp; pfam00939
198214008913	anion transporter; Region: dass; TIGR00785
198214008914	transmembrane helices; other site
198214008915	UGMP family protein; Validated; Region: PRK09604
198214008916	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214008917	nucleotide binding site [chemical binding]; other site
198214008918	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
198214008919	DNA primase; Validated; Region: dnaG; PRK05667
198214008920	CHC2 zinc finger; Region: zf-CHC2; pfam01807
198214008921	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
198214008922	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
198214008923	active site
198214008924	metal binding site [ion binding]; metal-binding site
198214008925	interdomain interaction site; other site
198214008926	DnaB-helicase binding domain of primase; Region: DnaB_bind; pfam10410
198214008927	DNA primase DnaG DnaB-binding; Region: DnaG_DnaB_bind; pfam08278
198214008928	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
198214008929	Sigma-70 factor, region 1.1; Region: Sigma70_r1_1; pfam03979
198214008930	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
198214008931	Sigma-70, non-essential region; Region: Sigma70_ner; pfam04546
198214008932	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
198214008933	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
198214008934	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
198214008935	DNA binding residues [nucleotide binding]
198214008936	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214008937	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214008938	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214008939	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789449 (169 aa). BLAST with identity of 99% in 168 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214008940	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789450 (255 aa). BLAST with identity of 99% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214008941	Predicted transcriptional regulators [Transcription]; Region: COG1695
198214008942	'Similar to Escherichia coli K12 aerotaxis sensor receptor, flavoprotein gi: 1789453 (507 aa). BLAST with identity of 98% in 506 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214008943	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
198214008944	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Region: BioA; COG0161
198214008945	inhibitor-cofactor binding pocket; inhibition site
198214008946	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214008947	catalytic residue [active]
198214008948	DNA-binding transcriptional repressor EbgR; Provisional; Region: PRK10339
198214008949	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214008950	DNA binding site [nucleotide binding]
198214008951	domain linker motif; other site
198214008952	Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalR; cd01544
198214008953	putative dimerization interface [polypeptide binding]; other site
198214008954	putative ligand binding site [chemical binding]; other site
198214008955	cryptic beta-D-galactosidase subunit alpha; Reviewed; Region: ebgA; PRK10340
198214008956	Glycosyl hydrolases family 2, sugar binding domain; Region: Glyco_hydro_2_N; pfam02837
198214008957	Glycosyl hydrolases family 2; Region: Glyco_hydro_2; pfam00703
198214008958	Glycosyl hydrolases family 2, TIM barrel domain; Region: Glyco_hydro_2_C; pfam02836
198214008959	Beta galactosidase small chain; Region: Bgal_small_N; pfam02929
198214008960	cryptic beta-D-galactosidase subunit beta; Reviewed; Region: ebgC; PRK10202
198214008961	inner membrane transporter YjeM; Provisional; Region: PRK15238
198214008962	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789461 (357 aa). BLAST with identity of 97% in 357 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214008963	alpha-glucosidase; Provisional; Region: PRK10137
198214008964	mycofactocin system FadH/OYE family oxidoreductase 2; Region: mycofact_OYE_2; TIGR03997
198214008965	2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli  is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the...; Region: DCR_FMN; cd02930
198214008966	active site
198214008967	FMN binding site [chemical binding]; other site
198214008968	2,4-decadienoyl-CoA binding site; other site
198214008969	catalytic residue [active]
198214008970	4Fe-4S cluster binding site [ion binding]; other site
198214008971	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214008972	Predicted transcription regulator containing HTH domain [Transcription]; Region: COG5499
198214008973	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214008974	non-specific DNA binding site [nucleotide binding]; other site
198214008975	salt bridge; other site
198214008976	sequence-specific DNA binding site [nucleotide binding]; other site
198214008977	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4680
198214008978	SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional; Region: PRK15001
198214008979	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214008980	S-adenosylmethionine binding site [chemical binding]; other site
198214008981	Predicted metal-dependent hydrolase [General function prediction only]; Region: COG1451
198214008982	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
198214008983	putative active site [active]
198214008984	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
198214008985	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
198214008986	integral membrane protein, TerC family; Region: R_switched_Alx; TIGR03718
198214008987	serine/threonine transporter SstT; Provisional; Region: PRK13628
198214008988	Bacterial inner membrane protein; Region: Imp-YgjV; pfam10688
198214008989	Domains similar to fish antifreeze type III protein; Region: SAF_AH_GD; cd11613
198214008990	galactarate dehydratase; Region: galactar-dH20; TIGR03248
198214008991	D-galactarate dehydratase / Altronate hydrolase, C terminus; Region: GD_AH_C; pfam04295
198214008992	glucuronate isomerase; Reviewed; Region: PRK02925
198214008993	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214008994	D-galactonate transporter; Region: 2A0114; TIGR00893
198214008995	putative substrate translocation pore; other site
198214008996	CblD like pilus biogenesis initiator; Region: CblD; cl06460
198214008997	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214008998	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214008999	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214009000	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009001	DNA-binding transcriptional repressor ExuR; Provisional; Region: PRK11523
198214009002	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214009003	DNA-binding site [nucleotide binding]; DNA binding site
198214009004	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214009005	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
198214009006	EnvZ/OmpR regulon moderator; Provisional; Region: PRK10629
198214009007	Similar to Escherichia coli K12 conserved hypothetical protein gi: 2367195 (128 aa). BLAST with identity of 99% in 123 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214009008	Uncharacterized conserved protein [Function unknown]; Region: ElaB; COG4575
198214009009	Predicted membrane protein [Function unknown]; Region: COG5393
198214009010	YqjK-like protein; Region: YqjK; pfam13997
198214009011	Predicted membrane protein [Function unknown]; Region: COG2259
198214009012	Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: ECM4; COG0435
198214009013	Glutathione S-transferase, N-terminal domain; Region: GST_N_2; pfam13409
198214009014	C-terminal, alpha helical domain of Class Omega-like Glutathione S-transferases; Region: GST_C_Omega_like; cd03190
198214009015	putative dimer interface [polypeptide binding]; other site
198214009016	N-terminal domain interface [polypeptide binding]; other site
198214009017	putative substrate binding pocket (H-site) [chemical binding]; other site
198214009018	Predicted membrane protein [Function unknown]; Region: COG3152
198214009019	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214009020	putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074
198214009021	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214009022	dimerization interface [polypeptide binding]; other site
198214009023	Pirin-related protein [General function prediction only]; Region: COG1741
198214009024	Pirin; Region: Pirin; pfam02678
198214009025	L-cysteine desulfidase [Amino acid transport and metabolism]; Region: COG3681
198214009026	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214009027	serine transporter; Region: stp; TIGR00814
198214009028	L-serine dehydratase TdcG; Provisional; Region: PRK15040
198214009029	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
198214009030	Serine dehydratase alpha chain; Region: SDH_alpha; pfam03313
198214009031	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
198214009032	homotrimer interaction site [polypeptide binding]; other site
198214009033	putative active site [active]
198214009034	formate acetyltransferase 1; Region: pyr_form_ly_1; TIGR01255
198214009035	Pyruvate formate lyase 1; Region: PFL1; cd01678
198214009036	coenzyme A binding site [chemical binding]; other site
198214009037	active site
198214009038	catalytic residues [active]
198214009039	glycine loop; other site
198214009040	propionate/acetate kinase; Provisional; Region: PRK12379
198214009041	threonine/serine transporter TdcC; Provisional; Region: PRK13629
198214009042	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214009043	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
198214009044	tetramer interface [polypeptide binding]; other site
198214009045	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214009046	catalytic residue [active]
198214009047	DNA-binding transcriptional activator TdcA; Provisional; Region: PRK10341
198214009048	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214009049	The C-terminal substrate binding domain of LysR-type transcriptional regulator TdcA, which is involved in the degradation of L-serine and L-threonine, contains the type 2 periplasmic binding fold; Region: PBP2_TdcA; cd08418
198214009050	putative substrate binding pocket [chemical binding]; other site
198214009051	putative dimerization interface [polypeptide binding]; other site
198214009052	DNA-binding transcriptional activator TdcR; Provisional; Region: PRK11424
198214009053	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789509 (396 aa). BLAST with identity of 96% in 393 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214009054	Protein of unknown function (DUF3521); Region: DUF3521; pfam12035
198214009055	glycerate kinase I; Provisional; Region: PRK10342
198214009056	tartronate semialdehyde reductase; Provisional; Region: garR; PRK11559
198214009057	NAD binding domain of 6-phosphogluconate dehydrogenase; Region: NAD_binding_2; pfam03446
198214009058	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; Region: NAD_binding_11; pfam14833
198214009059	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789514 (257 aa). BLAST with identity of 99% in 256 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214009060	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214009061	D-galactonate transporter; Region: 2A0114; TIGR00893
198214009062	putative substrate translocation pore; other site
198214009063	galactarate dehydratase; Region: galactar-dH20; TIGR03248
198214009064	Domains similar to fish antifreeze type III protein; Region: SAF_AH_GD; cd11613
198214009065	D-galactarate dehydratase / Altronate hydrolase, C terminus; Region: GD_AH_C; pfam04295
198214009066	DNA-binding transcriptional regulator AgaR; Provisional; Region: PRK09802
198214009067	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
198214009068	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214009069	tagatose 6-phosphate aldolase subunit KbaZ; Provisional; Region: PRK15458
198214009070	PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001
198214009071	active site
198214009072	phosphorylation site [posttranslational modification]
198214009073	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]; Region: ManY; COG3715
198214009074	Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]; Region: ManZ; COG3716
198214009075	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
198214009076	active pocket/dimerization site; other site
198214009077	active site
198214009078	phosphorylation site [posttranslational modification]
198214009079	N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Region: NagA; COG1820
198214009080	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
198214009081	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214009082	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214009083	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214009084	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009085	PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional; Region: PRK09757
198214009086	PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional; Region: PRK09855
198214009087	GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or...; Region: GlcN6P_deaminase; cd01399
198214009088	active site
198214009089	trimer interface [polypeptide binding]; other site
198214009090	allosteric site; other site
198214009091	active site lid [active]
198214009092	Similar to Escherichia coli K12  fimbrial-like protein gi: 1789531 (195 aa). BLAST with identity of 96% in 454 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214009093	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009094	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214009095	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214009096	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214009097	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
198214009098	Pili and flagellar-assembly chaperone, PapD N-terminal domain; Region: PapD_N; pfam00345
198214009099	Pili assembly chaperone PapD, C-terminal domain; Region: PapD_C; pfam02753
198214009100	Similar to Escherichia coli K12  outer membrane protein gi: 1789533 (839 aa). BLAST with identity of 98% in 1284 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214009101	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214009102	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214009103	Fimbrial protein; Region: Fimbrial; cl01416
198214009104	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
198214009105	putative SAM binding site [chemical binding]; other site
198214009106	putative homodimer interface [polypeptide binding]; other site
198214009107	Putative lipoprotein [General function prediction only]; Region: LppC; COG3107
198214009108	Periplasmic binding component of lipoprotein LppC, an immunodominant antigen; Region: PBP1_YraM_LppC_lipoprotein_like; cd06339
198214009109	putative ligand binding site [chemical binding]; other site
198214009110	TIGR00252 family protein; Region: TIGR00252
198214009111	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
198214009112	dimer interface [polypeptide binding]; other site
198214009113	active site
198214009114	outer membrane lipoprotein; Provisional; Region: PRK11023
198214009115	BON domain; Region: BON; pfam04972
198214009116	BON domain; Region: BON; pfam04972
198214009117	Predicted permease; Region: DUF318; pfam03773
198214009118	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
198214009119	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
198214009120	NAD(P) binding site [chemical binding]; other site
198214009121	active site
198214009122	intracellular protease, PfpI family; Region: PfpI; TIGR01382
198214009123	A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_like; cd03134
198214009124	proposed catalytic triad [active]
198214009125	conserved cys residue [active]
198214009126	hypothetical protein; Provisional; Region: PRK03467
198214009127	The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1; Region: GIY-YIG_UPF0213; cd10456
198214009128	GIY-YIG motif/motif A; other site
198214009129	putative active site [active]
198214009130	putative metal binding site [ion binding]; other site
198214009131	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
198214009132	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214009133	Coenzyme A binding pocket [chemical binding]; other site
198214009134	Putative lipid carrier protein [Lipid metabolism]; Region: COG3154
198214009135	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
198214009136	putative protease; Provisional; Region: PRK15447
198214009137	hypothetical protein; Provisional; Region: PRK10508
198214009138	tryptophan permease; Provisional; Region: PRK10483
198214009139	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214009140	ATP-dependent RNA helicase DeaD; Provisional; Region: PRK11634
198214009141	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
198214009142	ATP binding site [chemical binding]; other site
198214009143	Mg++ binding site [ion binding]; other site
198214009144	motif III; other site
198214009145	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214009146	nucleotide binding region [chemical binding]; other site
198214009147	ATP-binding site [chemical binding]; other site
198214009148	RNA recognition motif in Escherichia coli cold-shock DEAD box protein A (CsdA) and similar proteins; Region: RRM_EcCsdA_like; cd12499
198214009149	putative RNA binding site [nucleotide binding]; other site
198214009150	lipoprotein NlpI; Provisional; Region: PRK11189
198214009151	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
198214009152	binding surface
198214009153	TPR motif; other site
198214009154	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
198214009155	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
198214009156	RNase E interface [polypeptide binding]; other site
198214009157	trimer interface [polypeptide binding]; other site
198214009158	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
198214009159	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
198214009160	RNase E interface [polypeptide binding]; other site
198214009161	trimer interface [polypeptide binding]; other site
198214009162	active site
198214009163	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
198214009164	putative nucleic acid binding region [nucleotide binding]; other site
198214009165	G-X-X-G motif; other site
198214009166	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
198214009167	RNA binding site [nucleotide binding]; other site
198214009168	domain interface; other site
198214009169	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
198214009170	16S/18S rRNA binding site [nucleotide binding]; other site
198214009171	S13e-L30e interaction site [polypeptide binding]; other site
198214009172	25S rRNA binding site [nucleotide binding]; other site
198214009173	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK05033
198214009174	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
198214009175	RNA binding site [nucleotide binding]; other site
198214009176	active site
198214009177	Pseudouridine synthase II TruB, C-terminal; Region: TruB-C_2; pfam09157
198214009178	ribosome-binding factor A; Validated; Region: rbfA; PRK00521
198214009179	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
198214009180	Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364
198214009181	Uncharacterized protein conserved in bacteria (DUF2058); Region: DUF2058; cl01201
198214009182	translation initiation factor IF-2; Validated; Region: infB; PRK05306
198214009183	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
198214009184	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
198214009185	G1 box; other site
198214009186	putative GEF interaction site [polypeptide binding]; other site
198214009187	GTP/Mg2+ binding site [chemical binding]; other site
198214009188	Switch I region; other site
198214009189	G2 box; other site
198214009190	G3 box; other site
198214009191	Switch II region; other site
198214009192	G4 box; other site
198214009193	G5 box; other site
198214009194	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
198214009195	Translation-initiation factor 2; Region: IF-2; pfam11987
198214009196	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
198214009197	transcription elongation factor NusA; Validated; Region: nusA; PRK09202
198214009198	NusA N-terminal domain; Region: NusA_N; pfam08529
198214009199	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
198214009200	RNA binding site [nucleotide binding]; other site
198214009201	homodimer interface [polypeptide binding]; other site
198214009202	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
198214009203	G-X-X-G motif; other site
198214009204	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
198214009205	G-X-X-G motif; other site
198214009206	transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954
198214009207	transcription termination factor NusA, C-terminal duplication; Region: nusA_Cterm_rpt; TIGR01954
198214009208	hypothetical protein; Provisional; Region: PRK14641
198214009209	Bacillus subtilis YxlS-like, C-terminal domain; Region: YlxS_C; cd01734
198214009210	putative oligomer interface [polypeptide binding]; other site
198214009211	putative RNA binding site [nucleotide binding]; other site
198214009212	potential protein location (hypothetical protein SF3212 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-M)
198214009213	Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate .  In...; Region: Argininosuccinate_Synthase; cd01999
198214009214	ANP binding site [chemical binding]; other site
198214009215	Substrate Binding Site II [chemical binding]; other site
198214009216	Substrate Binding Site I [chemical binding]; other site
198214009217	Similar to Escherichia coli K12  alkaline phosphatase I gi: 1789564 (548 aa). BLAST with identity of 99% in 548 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214009218	Preprotein translocase SecG subunit; Region: SecG; pfam03840
198214009219	phosphoglucosamine mutase; Provisional; Region: glmM; PRK10887
198214009220	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
198214009221	active site
198214009222	substrate binding site [chemical binding]; other site
198214009223	metal binding site [ion binding]; metal-binding site
198214009224	Dihydropteroate synthase and related enzymes [Coenzyme metabolism]; Region: FolP; COG0294
198214009225	DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739
198214009226	substrate binding pocket [chemical binding]; other site
198214009227	dimer interface [polypeptide binding]; other site
198214009228	inhibitor binding site; inhibition site
198214009229	ATP-dependent metalloprotease; Reviewed; Region: hflB; PRK10733
198214009230	FtsH Extracellular; Region: FtsH_ext; pfam06480
198214009231	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214009232	Walker A motif; other site
198214009233	ATP binding site [chemical binding]; other site
198214009234	Walker B motif; other site
198214009235	arginine finger; other site
198214009236	Peptidase family M41; Region: Peptidase_M41; pfam01434
198214009237	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214009238	S-adenosylmethionine binding site [chemical binding]; other site
198214009239	RNA-binding protein YhbY; Provisional; Region: PRK10343
198214009240	transcription elongation factor GreA; Reviewed; Region: greA; PRK00226
198214009241	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
198214009242	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
198214009243	D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional; Region: PRK11113
198214009244	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]; Region: DacB; COG2027
198214009245	GTPase CgtA; Reviewed; Region: obgE; PRK12298
198214009246	GTP1/OBG; Region: GTP1_OBG; pfam01018
198214009247	Obg GTPase; Region: Obg; cd01898
198214009248	G1 box; other site
198214009249	GTP/Mg2+ binding site [chemical binding]; other site
198214009250	Switch I region; other site
198214009251	G2 box; other site
198214009252	G3 box; other site
198214009253	Switch II region; other site
198214009254	G4 box; other site
198214009255	G5 box; other site
198214009256	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
198214009257	EamA-like transporter family; Region: EamA; pfam00892
198214009258	EamA-like transporter family; Region: EamA; pfam00892
198214009259	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
198214009260	50S ribosomal protein L21; Validated; Region: rplU; PRK05573
198214009261	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
198214009262	substrate binding pocket [chemical binding]; other site
198214009263	chain length determination region; other site
198214009264	substrate-Mg2+ binding site; other site
198214009265	catalytic residues [active]
198214009266	aspartate-rich region 1; other site
198214009267	active site lid residues [active]
198214009268	aspartate-rich region 2; other site
198214009269	DNA-binding transcriptional regulator Nlp; Provisional; Region: PRK10344
198214009270	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); Region: EPSP_synthase; pfam00275
198214009271	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
198214009272	hinge; other site
198214009273	active site
198214009274	Predicted transcriptional regulator, BolA superfamily [Transcription]; Region: COG5007
198214009275	Predicted NTP binding protein (contains STAS domain) [General function prediction only]; Region: COG3113
198214009276	ABC transporter periplasmic binding protein MlaC; Provisional; Region: PRK15117
198214009277	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
198214009278	mce related protein; Region: MCE; pfam02470
198214009279	conserved hypothetical integral membrane protein; Region: TIGR00056
198214009280	putative ABC transporter ATP-binding protein YrbF; Provisional; Region: PRK11831
198214009281	ATP-binding cassette transport system involved in resistant to organic solvents; Region: ABC_Org_Solvent_Resistant; cd03261
198214009282	Walker A/P-loop; other site
198214009283	ATP binding site [chemical binding]; other site
198214009284	Q-loop/lid; other site
198214009285	ABC transporter signature motif; other site
198214009286	Walker B; other site
198214009287	D-loop; other site
198214009288	H-loop/switch region; other site
198214009289	putative calcium/sodium:proton antiporter; Provisional; Region: PRK10734
198214009290	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
198214009291	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
198214009292	D-arabinose 5-phosphate isomerase; Provisional; Region: PRK10892
198214009293	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
198214009294	putative active site [active]
198214009295	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
198214009296	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional; Region: PRK09484
198214009297	lipopolysaccharide exporter periplasmic protein; Provisional; Region: PRK10893
198214009298	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1934
198214009299	lipopolysaccharide transport periplasmic protein LptA; Provisional; Region: PRK10894
198214009300	lipopolysaccharide ABC transporter ATP-binding protein; Provisional; Region: PRK10895
198214009301	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
198214009302	Walker A/P-loop; other site
198214009303	ATP binding site [chemical binding]; other site
198214009304	Q-loop/lid; other site
198214009305	ABC transporter signature motif; other site
198214009306	Walker B; other site
198214009307	D-loop; other site
198214009308	H-loop/switch region; other site
198214009309	RNA polymerase factor sigma-54; Reviewed; Region: PRK05932
198214009310	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
198214009311	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
198214009312	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
198214009313	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
198214009314	30S subunit binding site; other site
198214009315	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214009316	active site
198214009317	phosphorylation site [posttranslational modification]
198214009318	P-loop ATPase protein family; Region: ATP_bind_2; pfam03668
198214009319	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
198214009320	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
198214009321	dimerization domain swap beta strand [polypeptide binding]; other site
198214009322	regulatory protein interface [polypeptide binding]; other site
198214009323	active site
198214009324	regulatory phosphorylation site [posttranslational modification]; other site
198214009325	hypothetical protein; Provisional; Region: PRK10345
198214009326	Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]; Region: SPS1; COG0515
198214009327	Similar to Escherichia coli K12  peptidoglycan enzyme gi: 1789601 (243 aa). BLAST with identity of 99% in 242 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214009328	isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional; Region: PRK11780
198214009329	Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1; Region: GATase1_ES1; cd03133
198214009330	conserved cys residue [active]
198214009331	aerobic respiration control sensor protein ArcB; Provisional; Region: PRK11091
198214009332	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
198214009333	putative active site [active]
198214009334	heme pocket [chemical binding]; other site
198214009335	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214009336	dimer interface [polypeptide binding]; other site
198214009337	phosphorylation site [posttranslational modification]
198214009338	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214009339	ATP binding site [chemical binding]; other site
198214009340	Mg2+ binding site [ion binding]; other site
198214009341	G-X-G motif; other site
198214009342	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214009343	active site
198214009344	phosphorylation site [posttranslational modification]
198214009345	intermolecular recognition site; other site
198214009346	dimerization interface [polypeptide binding]; other site
198214009347	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
198214009348	putative binding surface; other site
198214009349	active site
198214009350	radical SAM protein, TIGR01212 family; Region: TIGR01212
198214009351	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214009352	FeS/SAM binding site; other site
198214009353	glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750
198214009354	Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The...; Region: GltS; cd00713
198214009355	active site
198214009356	dimer interface [polypeptide binding]; other site
198214009357	Glutamate synthase central domain; Region: Glu_syn_central; pfam04898
198214009358	Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast...; Region: GltS_FMN; cd02808
198214009359	active site
198214009360	FMN binding site [chemical binding]; other site
198214009361	substrate binding site [chemical binding]; other site
198214009362	3Fe-4S cluster binding site [ion binding]; other site
198214009363	gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982
198214009364	domain interface; other site
198214009365	glutamate synthase small subunit family protein, proteobacterial; Region: gltD_gamma_fam; TIGR01318
198214009366	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; Region: Fer4_20; pfam14691
198214009367	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214009368	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214009369	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789614 (376 aa). BLAST with identity of 92% in 135 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214009370	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214009371	Transposase; Region: HTH_Tnp_1; pfam01527
198214009372	putative transposase OrfB; Reviewed; Region: PHA02517
198214009373	HTH-like domain; Region: HTH_21; pfam13276
198214009374	Integrase core domain; Region: rve; pfam00665
198214009375	Integrase core domain; Region: rve_3; pfam13683
198214009376	uncharacterized protein, YhcH/YjgK/YiaL family; Region: TIGR00022
198214009377	Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Region: NagC; COG1940
198214009378	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
198214009379	nucleotide binding site [chemical binding]; other site
198214009380	N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of...; Region: NanE; cd04729
198214009381	putative active site cavity [active]
198214009382	putative sialic acid transporter; Provisional; Region: PRK03893
198214009383	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214009384	putative substrate translocation pore; other site
198214009385	N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL); Region: NAL; cd00954
198214009386	inhibitor site; inhibition site
198214009387	active site
198214009388	dimer interface [polypeptide binding]; other site
198214009389	catalytic residue [active]
198214009390	transcriptional regulator NanR; Provisional; Region: PRK03837
198214009391	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214009392	DNA-binding site [nucleotide binding]; DNA binding site
198214009393	FCD domain; Region: FCD; pfam07729
198214009394	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214009395	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214009396	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214009397	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009398	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009399	C4-dicarboxylate transporter [Energy production and conversion]; Region: DcuC; COG3069
198214009400	putative cryptic C4-dicarboxylate transporter DcuD; Provisional; Region: PRK09804
198214009401	Stringent starvation protein B [General function prediction only]; Region: SspB; COG2969
198214009402	stringent starvation protein A; Provisional; Region: sspA; PRK09481
198214009403	GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival...; Region: GST_N_SspA; cd03059
198214009404	C-terminal domain interface [polypeptide binding]; other site
198214009405	putative GSH binding site (G-site) [chemical binding]; other site
198214009406	dimer interface [polypeptide binding]; other site
198214009407	C-terminal, alpha helical domain of Stringent starvation protein A; Region: GST_C_SspA; cd03186
198214009408	dimer interface [polypeptide binding]; other site
198214009409	N-terminal domain interface [polypeptide binding]; other site
198214009410	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
198214009411	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
198214009412	23S rRNA interface [nucleotide binding]; other site
198214009413	L3 interface [polypeptide binding]; other site
198214009414	Predicted ATPase [General function prediction only]; Region: COG1485
198214009415	hypothetical protein; Provisional; Region: PRK11677
198214009416	serine endoprotease; Provisional; Region: PRK10898
198214009417	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
198214009418	PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
198214009419	protein binding site [polypeptide binding]; other site
198214009420	malate dehydrogenase; Provisional; Region: PRK05086
198214009421	Glyoxysomal and mitochondrial malate dehydrogenases; Region: MDH_glyoxysomal_mitochondrial; cd01337
198214009422	NAD binding site [chemical binding]; other site
198214009423	dimerization interface [polypeptide binding]; other site
198214009424	Substrate binding site [chemical binding]; other site
198214009425	arginine repressor; Provisional; Region: PRK05066
198214009426	Arginine repressor, DNA binding domain; Region: Arg_repressor; pfam01316
198214009427	Arginine repressor, C-terminal domain; Region: Arg_repressor_C; pfam02863
198214009428	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214009429	Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell; Region: Barstar; cd05142
198214009430	RNAase interaction site [polypeptide binding]; other site
198214009431	p-hydroxybenzoic acid efflux subunit AaeB; Provisional; Region: PRK10631
198214009432	Fusaric acid resistance protein family; Region: FUSC; pfam04632
198214009433	p-hydroxybenzoic acid efflux subunit AaeA; Provisional; Region: PRK10559
198214009434	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214009435	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214009436	efflux system membrane protein; Provisional; Region: PRK11594
198214009437	transcriptional regulator; Provisional; Region: PRK10632
198214009438	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214009439	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
198214009440	putative effector binding pocket; other site
198214009441	dimerization interface [polypeptide binding]; other site
198214009442	protease TldD; Provisional; Region: tldD; PRK10735
198214009443	hypothetical protein; Provisional; Region: PRK10899
198214009444	Protein of unknown function; Region: DUF3971; pfam13116
198214009445	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
198214009446	ribonuclease G; Provisional; Region: PRK11712
198214009447	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
198214009448	homodimer interface [polypeptide binding]; other site
198214009449	oligonucleotide binding site [chemical binding]; other site
198214009450	Ribonuclease E/G family; Region: RNase_E_G; pfam10150
198214009451	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
198214009452	active site
198214009453	dimer interface [polypeptide binding]; other site
198214009454	rod shape-determining protein MreD; Provisional; Region: PRK11060
198214009455	rod shape-determining protein MreC; Region: mreC; TIGR00219
198214009456	rod shape-determining protein MreB; Provisional; Region: PRK13927
198214009457	MreB and similar proteins; Region: MreB_like; cd10225
198214009458	nucleotide binding site [chemical binding]; other site
198214009459	Mg binding site [ion binding]; other site
198214009460	putative protofilament interaction site [polypeptide binding]; other site
198214009461	RodZ interaction site [polypeptide binding]; other site
198214009462	regulatory protein CsrD; Provisional; Region: PRK11059
198214009463	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
198214009464	metal binding site [ion binding]; metal-binding site
198214009465	active site
198214009466	I-site; other site
198214009467	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214009468	Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288
198214009469	putative quinone oxidoreductase, YhdH/YhfP family; Region: oxido_YhdH; TIGR02823
198214009470	NADP binding site [chemical binding]; other site
198214009471	dimer interface [polypeptide binding]; other site
198214009472	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302
198214009473	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
198214009474	carboxyltransferase (CT) interaction site; other site
198214009475	biotinylation site [posttranslational modification]; other site
198214009476	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
198214009477	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
198214009478	Carbamoyl-phosphate synthase L chain, ATP binding domain; Region: CPSase_L_D2; pfam02786
198214009479	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
198214009480	hypothetical protein; Provisional; Region: PRK10633
198214009481	Na(+)/pantothenate cotransporters: PanF of Escherichia coli and related proteins; solute binding domain; Region: SLC5sbd_PanF; cd10327
198214009482	Na binding site [ion binding]; other site
198214009483	ribosomal protein L11 methyltransferase; Region: prmA; TIGR00406
198214009484	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214009485	S-adenosylmethionine binding site [chemical binding]; other site
198214009486	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
198214009487	active site
198214009488	FMN binding site [chemical binding]; other site
198214009489	catalytic residues [active]
198214009490	substrate binding site [chemical binding]; other site
198214009491	global DNA-binding transcriptional dual regulator Fis; Provisional; Region: fis; PRK00430
198214009492	putative methyltransferase; Provisional; Region: PRK11524
198214009493	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214009494	Protein of unknown function (DUF2556); Region: DUF2556; pfam10831
198214009495	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009496	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214009497	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
198214009498	substrate binding pocket [chemical binding]; other site
198214009499	membrane-bound complex binding site; other site
198214009500	hinge residues; other site
198214009501	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214009502	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214009503	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214009504	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214009505	Similar to Escherichia coli K12  transport system permease gi: 1789669 (369 aa). BLAST with identity of 97% in 180 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214009506	ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765
198214009507	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214009508	dimer interface [polypeptide binding]; other site
198214009509	conserved gate region; other site
198214009510	putative PBP binding loops; other site
198214009511	ABC-ATPase subunit interface; other site
198214009512	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
198214009513	ATP-binding cassette domain of the histidine and glutamine transporters; Region: ABC_HisP_GlnQ; cd03262
198214009514	Walker A/P-loop; other site
198214009515	ATP binding site [chemical binding]; other site
198214009516	Q-loop/lid; other site
198214009517	ABC transporter signature motif; other site
198214009518	Walker B; other site
198214009519	D-loop; other site
198214009520	H-loop/switch region; other site
198214009521	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
198214009522	Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645
198214009523	trimer interface [polypeptide binding]; other site
198214009524	putative metal binding site [ion binding]; other site
198214009525	Protein of unknown function (DUF1488); Region: DUF1488; pfam07369
198214009526	shikimate 5-dehydrogenase; Region: aroE; TIGR00507
198214009527	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
198214009528	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
198214009529	shikimate binding site; other site
198214009530	NAD(P) binding site [chemical binding]; other site
198214009531	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional; Region: PRK10634
198214009532	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
198214009533	Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]; Region: TopA; COG0551
198214009534	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
198214009535	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
198214009536	hypothetical protein; Validated; Region: PRK03430
198214009537	hypothetical protein; Provisional; Region: PRK10736
198214009538	DNA protecting protein DprA; Region: dprA; TIGR00732
198214009539	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
198214009540	active site
198214009541	catalytic residues [active]
198214009542	metal binding site [ion binding]; metal-binding site
198214009543	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
198214009544	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
198214009545	putative active site [active]
198214009546	substrate binding site [chemical binding]; other site
198214009547	putative cosubstrate binding site; other site
198214009548	catalytic site [active]
198214009549	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
198214009550	substrate binding site [chemical binding]; other site
198214009551	N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological...; Region: Methyltransferase_Sun; cd00620
198214009552	putative RNA binding site [nucleotide binding]; other site
198214009553	16S rRNA methyltransferase B; Provisional; Region: PRK10901
198214009554	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214009555	S-adenosylmethionine binding site [chemical binding]; other site
198214009556	potassium transporter peripheral membrane component; Reviewed; Region: trkA; PRK09496
198214009557	TrkA-N domain; Region: TrkA_N; pfam02254
198214009558	TrkA-C domain; Region: TrkA_C; pfam02080
198214009559	TrkA-N domain; Region: TrkA_N; pfam02254
198214009560	TrkA-C domain; Region: TrkA_C; pfam02080
198214009561	Homeodomain-like domain; Region: HTH_23; pfam13384
198214009562	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214009563	Transposase; Region: HTH_Tnp_1; pfam01527
198214009564	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214009565	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214009566	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214009567	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214009568	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214009569	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214009570	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214009571	50S ribosomal protein L17; Validated; Region: rplQ; PRK05591
198214009572	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
198214009573	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
198214009574	alphaNTD homodimer interface [polypeptide binding]; other site
198214009575	alphaNTD - beta interaction site [polypeptide binding]; other site
198214009576	alphaNTD - beta' interaction site [polypeptide binding]; other site
198214009577	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
198214009578	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
198214009579	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
198214009580	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214009581	RNA binding surface [nucleotide binding]; other site
198214009582	30S ribosomal protein S11; Validated; Region: PRK05309
198214009583	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
198214009584	Ribosomal protein L36; Region: Ribosomal_L36; pfam00444
198214009585	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
198214009586	SecY translocase; Region: SecY; pfam00344
198214009587	50S ribosomal protein L15; Reviewed; Region: rplO; PRK05592
198214009588	Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that...; Region: Ribosomal_L30; cd01658
198214009589	23S rRNA binding site [nucleotide binding]; other site
198214009590	30S ribosomal protein S5; Validated; Region: rpsE; PRK00550
198214009591	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
198214009592	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
198214009593	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
198214009594	23S rRNA interface [nucleotide binding]; other site
198214009595	5S rRNA interface [nucleotide binding]; other site
198214009596	L27 interface [polypeptide binding]; other site
198214009597	L5 interface [polypeptide binding]; other site
198214009598	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
198214009599	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
198214009600	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
198214009601	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
198214009602	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
198214009603	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
198214009604	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
198214009605	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
198214009606	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
198214009607	RNA binding site [nucleotide binding]; other site
198214009608	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
198214009609	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
198214009610	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
198214009611	23S rRNA interface [nucleotide binding]; other site
198214009612	putative translocon interaction site; other site
198214009613	signal recognition particle (SRP54) interaction site; other site
198214009614	L23 interface [polypeptide binding]; other site
198214009615	trigger factor interaction site; other site
198214009616	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
198214009617	23S rRNA interface [nucleotide binding]; other site
198214009618	5S rRNA interface [nucleotide binding]; other site
198214009619	putative antibiotic binding site [chemical binding]; other site
198214009620	L25 interface [polypeptide binding]; other site
198214009621	L27 interface [polypeptide binding]; other site
198214009622	30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310
198214009623	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
198214009624	G-X-X-G motif; other site
198214009625	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
198214009626	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
198214009627	protein-rRNA interface [nucleotide binding]; other site
198214009628	putative translocon binding site; other site
198214009629	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
198214009630	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
198214009631	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
198214009632	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
198214009633	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
198214009634	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
198214009635	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
198214009636	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
198214009637	Bacterioferritin, ferritin-like diiron-binding domain; Region: Bacterioferritin; cd00907
198214009638	Ferritin-like domain; Region: Ferritin; pfam00210
198214009639	heme binding site [chemical binding]; other site
198214009640	ferroxidase pore; other site
198214009641	ferroxidase diiron center [ion binding]; other site
198214009642	bacterioferritin-associated ferredoxin; Provisional; Region: PRK10509
198214009643	elongation factor Tu; Reviewed; Region: PRK00049
198214009644	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
198214009645	G1 box; other site
198214009646	GEF interaction site [polypeptide binding]; other site
198214009647	GTP/Mg2+ binding site [chemical binding]; other site
198214009648	Switch I region; other site
198214009649	G2 box; other site
198214009650	G3 box; other site
198214009651	Switch II region; other site
198214009652	G4 box; other site
198214009653	G5 box; other site
198214009654	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
198214009655	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
198214009656	Antibiotic Binding Site [chemical binding]; other site
198214009657	elongation factor G; Reviewed; Region: PRK00007
198214009658	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
198214009659	G1 box; other site
198214009660	putative GEF interaction site [polypeptide binding]; other site
198214009661	GTP/Mg2+ binding site [chemical binding]; other site
198214009662	Switch I region; other site
198214009663	G2 box; other site
198214009664	G3 box; other site
198214009665	Switch II region; other site
198214009666	G4 box; other site
198214009667	G5 box; other site
198214009668	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
198214009669	Elongation Factor G, domain II; Region: EFG_II; pfam14492
198214009670	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
198214009671	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
198214009672	30S ribosomal protein S7; Validated; Region: PRK05302
198214009673	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
198214009674	S17 interaction site [polypeptide binding]; other site
198214009675	S8 interaction site; other site
198214009676	16S rRNA interaction site [nucleotide binding]; other site
198214009677	streptomycin interaction site [chemical binding]; other site
198214009678	23S rRNA interaction site [nucleotide binding]; other site
198214009679	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
198214009680	sulfur transfer complex subunit TusB; Provisional; Region: PRK13510
198214009681	sulfur relay protein TusC; Validated; Region: PRK00211
198214009682	sulfur transfer complex subunit TusD; Validated; Region: PRK00207
198214009683	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
198214009684	YheO-like PAS domain; Region: PAS_6; pfam08348
198214009685	HTH domain; Region: HTH_22; pfam13309
198214009686	FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK10902
198214009687	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
198214009688	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
198214009689	phi X174 lysis protein; Provisional; Region: PRK02793
198214009690	FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK10737
198214009691	FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047
198214009692	Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]; Region: COG3529
198214009693	glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional; Region: PRK04930
198214009694	putative ABC transporter ATP-binding protein; Provisional; Region: PRK10636
198214009695	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214009696	ABC transporter; Region: ABC_tran_2; pfam12848
198214009697	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214009698	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
198214009699	Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]; Region: COG0429
198214009700	putative hydrolase; Provisional; Region: PRK10985
198214009701	hypothetical protein; Provisional; Region: PRK04966
198214009702	Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to...; Region: PRK_like; cd02029
198214009703	active site
198214009704	hypothetical protein; Provisional; Region: PRK10738
198214009705	DNA-binding transcriptional dual regulator Crp; Provisional; Region: PRK11753
198214009706	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
198214009707	ligand binding site [chemical binding]; other site
198214009708	flexible hinge region; other site
198214009709	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
198214009710	putative switch regulator; other site
198214009711	non-specific DNA interactions [nucleotide binding]; other site
198214009712	DNA binding site [nucleotide binding]
198214009713	sequence specific DNA binding site [nucleotide binding]; other site
198214009714	putative cAMP binding site [chemical binding]; other site
198214009715	integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667
198214009716	FUSC-like inner membrane protein yccS; Region: FUSC-like; pfam12805
198214009717	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
198214009718	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Region: BioA; COG0161
198214009719	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
198214009720	inhibitor-cofactor binding pocket; inhibition site
198214009721	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214009722	catalytic residue [active]
198214009723	para-aminobenzoate synthase component II; Provisional; Region: PRK08857
198214009724	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
198214009725	glutamine binding [chemical binding]; other site
198214009726	catalytic triad [active]
198214009727	cell filamentation protein Fic; Provisional; Region: PRK10347
198214009728	Protein of unknown function (DUF2559); Region: DUF2559; pfam10832
198214009729	cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these...; Region: cyclophilin_EcCYP_like; cd01920
198214009730	substrate binding site [chemical binding]; other site
198214009731	putative transporter; Provisional; Region: PRK03699
198214009732	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214009733	putative substrate translocation pore; other site
198214009734	nitrite reductase subunit NirD; Provisional; Region: PRK14989
198214009735	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214009736	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
198214009737	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
198214009738	Nitrite and sulphite reductase 4Fe-4S domain; Region: NIR_SIR; pfam01077
198214009739	Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while...; Region: Rieske_NirD; cd03529
198214009740	nitrite transporter NirC; Provisional; Region: PRK11562
198214009741	siroheme synthase; Provisional; Region: cysG; PRK10637
198214009742	Putative NAD(P)-binding; Region: NAD_binding_7; pfam13241
198214009743	Sirohaem biosynthesis protein central; Region: Sirohm_synth_M; pfam14824
198214009744	Sirohaem synthase dimerization region; Region: CysG_dimeriser; pfam10414
198214009745	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
198214009746	active site
198214009747	SAM binding site [chemical binding]; other site
198214009748	homodimer interface [polypeptide binding]; other site
198214009749	Protein of unknown function (DUF4223); Region: DUF4223; pfam13978
198214009750	Similar to Escherichia coli K12  amino acid/amine transport protein gi: 2367216 (463 aa). BLAST with identity of 99% in 462 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214009751	fructoselysine-6-P-deglycase; Provisional; Region: frlB; PRK11382
198214009752	SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS; cl00389
198214009753	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
198214009754	dimer interface [polypeptide binding]; other site
198214009755	active site
198214009756	fructoselysine 3-epimerase; Provisional; Region: PRK09856
198214009757	Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261
198214009758	Fructoselysine kinase-like.  Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the...; Region: Fructoselysine_kinase_like; cd01940
198214009759	substrate binding site [chemical binding]; other site
198214009760	ATP binding site [chemical binding]; other site
198214009761	DNA-binding transcriptional regulator FrlR; Provisional; Region: PRK11402
198214009762	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214009763	DNA-binding site [nucleotide binding]; DNA binding site
198214009764	UTRA domain; Region: UTRA; pfam07702
198214009765	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945
198214009766	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214009767	catalytic residue [active]
198214009768	Protein of unknown function; Region: YhfT; pfam10797
198214009769	Protein of unknown function DUF2620; Region: DUF2620; pfam10941
198214009770	putative mutase; Provisional; Region: PRK12383
198214009771	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX; Region: PLPDE_III_yhfX_like; cd06811
198214009772	dimer interface [polypeptide binding]; other site
198214009773	Predicted amino acid racemase [Amino acid transport and metabolism]; Region: COG3457
198214009774	active site
198214009775	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
198214009776	substrate binding site [chemical binding]; other site
198214009777	catalytic residue [active]
198214009778	PRD domain protein EF_0829/AHA_3910; Region: EF_0829; TIGR03582
198214009779	Helix-turn-helix domain; Region: HTH_41; pfam14502
198214009780	YhfZ C-terminal domain; Region: YhfZ_C; pfam14503
198214009781	tryptophanyl-tRNA synthetase; Reviewed; Region: PRK00927
198214009782	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
198214009783	active site
198214009784	HIGH motif; other site
198214009785	dimer interface [polypeptide binding]; other site
198214009786	KMSKS motif; other site
198214009787	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214009788	phosphoglycolate phosphatase; Provisional; Region: PRK13222
198214009789	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214009790	motif II; other site
198214009791	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
198214009792	substrate binding site [chemical binding]; other site
198214009793	hexamer interface [polypeptide binding]; other site
198214009794	metal binding site [ion binding]; metal-binding site
198214009795	DNA adenine methylase; Provisional; Region: PRK10904
198214009796	cell division protein DamX; Validated; Region: PRK10905
198214009797	Sporulation related domain; Region: SPOR; pfam05036
198214009798	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
198214009799	active site
198214009800	dimer interface [polypeptide binding]; other site
198214009801	metal binding site [ion binding]; metal-binding site
198214009802	Shikimate kinase [Amino acid transport and metabolism]; Region: AroK; COG0703
198214009803	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
198214009804	ADP binding site [chemical binding]; other site
198214009805	magnesium binding site [ion binding]; other site
198214009806	putative shikimate binding site; other site
198214009807	outer membrane porin HofQ; Provisional; Region: hofQ; PRK10560
198214009808	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
198214009809	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
198214009810	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789794 (148 aa). BLAST with identity of 99% in 148 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214009811	Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilN; COG3166
198214009812	Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilM; COG4972
198214009813	penicillin-binding protein 1a; Provisional; Region: mrcA; PRK11636
198214009814	Transglycosylase; Region: Transgly; pfam00912
198214009815	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
198214009816	adenosine nucleotide hydrolase NudE; Provisional; Region: nudE; PRK11762
198214009817	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
198214009818	ADP-ribose binding site [chemical binding]; other site
198214009819	dimer interface [polypeptide binding]; other site
198214009820	active site
198214009821	nudix motif; other site
198214009822	metal binding site [ion binding]; metal-binding site
198214009823	Intracellular growth attenuator protein IgaA; Region: IgaA; pfam07095
198214009824	GMP/IMP nucleotidase; Provisional; Region: PRK14988
198214009825	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Region: HAD-SF-IA-v3; TIGR01509
198214009826	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214009827	motif II; other site
198214009828	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214009829	RNA binding surface [nucleotide binding]; other site
198214009830	Hsp33-like chaperonin; Reviewed; Region: hslO; PRK00114
198214009831	Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions.  In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cd00498
198214009832	dimerization interface [polypeptide binding]; other site
198214009833	domain crossover interface; other site
198214009834	redox-dependent activation switch; other site
198214009835	Domain of unknown function (DUF4153); Region: DUF4153; pfam13687
198214009836	Glycosyl hydrolase family 81; Region: Glyco_hydro_81; cl02310
198214009837	Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_ATP; cd00484
198214009838	active site
198214009839	substrate-binding site [chemical binding]; other site
198214009840	metal-binding site [ion binding]
198214009841	ATP binding site [chemical binding]; other site
198214009842	osmolarity sensor protein; Provisional; Region: envZ; PRK09467
198214009843	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214009844	dimerization interface [polypeptide binding]; other site
198214009845	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214009846	dimer interface [polypeptide binding]; other site
198214009847	phosphorylation site [posttranslational modification]
198214009848	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214009849	ATP binding site [chemical binding]; other site
198214009850	Mg2+ binding site [ion binding]; other site
198214009851	G-X-G motif; other site
198214009852	osmolarity response regulator; Provisional; Region: ompR; PRK09468
198214009853	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214009854	active site
198214009855	phosphorylation site [posttranslational modification]
198214009856	intermolecular recognition site; other site
198214009857	dimerization interface [polypeptide binding]; other site
198214009858	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214009859	DNA binding site [nucleotide binding]
198214009860	transcription elongation factor GreB; Reviewed; Region: greB; PRK01885
198214009861	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
198214009862	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
198214009863	Transcriptional accessory protein [Transcription]; Region: Tex; COG2183
198214009864	Tex-like protein N-terminal domain; Region: Tex_N; pfam09371
198214009865	Likely ribonuclease with RNase H fold; Region: YqgFc; smart00732
198214009866	Helix-hairpin-helix motif; Region: HHH_3; pfam12836
198214009867	S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression; Region: S1_Tex; cd05685
198214009868	RNA binding site [nucleotide binding]; other site
198214009869	ferrous iron transport protein A; Reviewed; Region: feoA; PRK09555
198214009870	ferrous iron transport protein B; Reviewed; Region: feoB; PRK09554
198214009871	Ferrous iron transport protein B (FeoB) family; Region: FeoB; cd01879
198214009872	G1 box; other site
198214009873	GTP/Mg2+ binding site [chemical binding]; other site
198214009874	Switch I region; other site
198214009875	G2 box; other site
198214009876	G3 box; other site
198214009877	Switch II region; other site
198214009878	G4 box; other site
198214009879	G5 box; other site
198214009880	Nucleoside recognition; Region: Gate; pfam07670
198214009881	Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664
198214009882	Nucleoside recognition; Region: Gate; pfam07670
198214009883	ferrous iron transport protein FeoC; Provisional; Region: PRK15431
198214009884	putative transposase; Provisional; Region: PRK09857
198214009885	Putative transposase, YhgA-like; Region: Transposase_31; pfam04754
198214009886	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214009887	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214009888	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214009889	HTH-like domain; Region: HTH_21; pfam13276
198214009890	Integrase core domain; Region: rve; pfam00665
198214009891	Integrase core domain; Region: rve_3; pfam13683
198214009892	Antidote-toxin recognition MazE; Region: Antitoxin-MazE; cl00877
198214009893	PemK-like protein; Region: PemK; pfam02452
198214009894	carboxylesterase BioH; Provisional; Region: PRK10349
198214009895	Putative lysophospholipase; Region: Hydrolase_4; cl19140
198214009896	Putative lysophospholipase; Region: Hydrolase_4; cl19140
198214009897	Predicted amidophosphoribosyltransferases [General function prediction only]; Region: ComFC; COG1040
198214009898	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214009899	active site
198214009900	Fe/S biogenesis protein NfuA; Provisional; Region: PRK11190
198214009901	Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]; Region: sufA; COG0316
198214009902	Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]; Region: COG0694
198214009903	high-affinity gluconate transporter; Provisional; Region: PRK14984
198214009904	GntP family permease; Region: GntP_permease; pfam02447
198214009905	4-alpha-glucanotransferase; Provisional; Region: malQ; PRK11052
198214009906	4-alpha-glucanotransferase; Region: malQ; TIGR00217
198214009907	maltodextrin phosphorylase; Provisional; Region: PRK14985
198214009908	This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of...; Region: GT1_Glycogen_Phosphorylase; cd04300
198214009909	active site pocket [active]
198214009910	Similar to Escherichia coli K12 positive regulator of mal regulon gi: 2367223 (902 aa). BLAST with identity of 99% in 894 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214009911	This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while  RTPC has 3 similar repeats...; Region: EPT_RTPC-like; cl00288
198214009912	RNA 3'-terminal-phosphate cyclase; Provisional; Region: PRK04204
198214009913	putative active site [active]
198214009914	Uncharacterized conserved protein [Function unknown]; Region: RtcB; COG1690
198214009915	tRNA-splicing ligase RtcB; Region: RtcB; pfam01139
198214009916	Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]; Region: RtcR; COG4650
198214009917	Regulator of RNA terminal phosphate cyclase; Region: RtcR; pfam06956
198214009918	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214009919	Walker A motif; other site
198214009920	ATP binding site [chemical binding]; other site
198214009921	Walker B motif; other site
198214009922	arginine finger; other site
198214009923	DNA-binding transcriptional repressor GlpR; Provisional; Region: PRK10906
198214009924	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
198214009925	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214009926	intramembrane serine protease GlpG; Provisional; Region: PRK10907
198214009927	Protein of unknown function (DUF3582); Region: DUF3582; pfam12122
198214009928	Membrane associated serine protease [Amino acid transport and metabolism]; Region: COG0705
198214009929	GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a...; Region: GlpE_ST; cd01444
198214009930	active site residue [active]
198214009931	glycerol-3-phosphate dehydrogenase; Reviewed; Region: glpD; PRK12266
198214009932	Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GlpA; COG0578
198214009933	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214009934	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214009935	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214009936	glycogen phosphorylase; Provisional; Region: PRK14986
198214009937	This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of...; Region: GT1_Glycogen_Phosphorylase; cd04300
198214009938	homodimer interface [polypeptide binding]; other site
198214009939	active site pocket [active]
198214009940	glycogen synthase; Provisional; Region: glgA; PRK00654
198214009941	This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family...; Region: GT1_Glycogen_synthase_DULL1_like; cd03791
198214009942	ADP-binding pocket [chemical binding]; other site
198214009943	homodimer interface [polypeptide binding]; other site
198214009944	glucose-1-phosphate adenylyltransferase; Provisional; Region: glgC; PRK00725
198214009945	ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch; Region: ADP_Glucose_PP; cd02508
198214009946	ligand binding site; other site
198214009947	oligomer interface; other site
198214009948	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
198214009949	Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and...; Region: LbH_G1P_AT_C; cd04651
198214009950	dimer interface [polypeptide binding]; other site
198214009951	N-terminal domain interface [polypeptide binding]; other site
198214009952	sulfate 1 binding site; other site
198214009953	glycogen debranching enzyme; Provisional; Region: PRK03705
198214009954	N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase); Region: E_set_GDE_Isoamylase_N; cd02856
198214009955	Alpha amylase catalytic domain found in glycogen debranching enzymes; Region: AmyAc_Glg_debranch; cd11326
198214009956	active site
198214009957	catalytic site [active]
198214009958	glycogen branching enzyme; Provisional; Region: PRK05402
198214009959	N-terminal Early set domain associated with the catalytic domain of prokaryotic glycogen branching enzyme; Region: E_set_GBE_prok_N; cd02855
198214009960	Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme); Region: AmyAc_Glg_BE; cd11322
198214009961	active site
198214009962	catalytic site [active]
198214009963	Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; pfam02806
198214009964	aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598
198214009965	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; pfam01118
198214009966	Semialdehyde dehydrogenase, dimerization domain; Region: Semialdhyde_dhC; pfam02774
198214009967	putative antibiotic transporter; Provisional; Region: PRK10739
198214009968	low affinity gluconate transporter; Provisional; Region: PRK10472
198214009969	GntP family permease; Region: GntP_permease; pfam02447
198214009970	Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits; Region: GntK; cd02021
198214009971	Thymidylate kinase [Nucleotide transport and metabolism]; Region: Tmk; COG0125
198214009972	ATP-binding site [chemical binding]; other site
198214009973	Gluconate-6-phosphate binding site [chemical binding]; other site
198214009974	gluconate operon transcriptional regulator; Provisional; Region: PRK14987
198214009975	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214009976	DNA binding site [nucleotide binding]
198214009977	domain linker motif; other site
198214009978	Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575
198214009979	putative ligand binding site [chemical binding]; other site
198214009980	putative dimerization interface [polypeptide binding]; other site
198214009981	Pirin-related protein [General function prediction only]; Region: COG1741
198214009982	Pirin; Region: Pirin; pfam02678
198214009983	putative oxidoreductase; Provisional; Region: PRK10206
198214009984	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
198214009985	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
198214009986	Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]; Region: RimL; COG1670
198214009987	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214009988	Coenzyme A binding pocket [chemical binding]; other site
198214009989	gamma-glutamyltranspeptidase; Reviewed; Region: ggt; PRK09615
198214009990	hypothetical protein; Provisional; Region: PRK10350
198214009991	cytoplasmic glycerophosphodiester phosphodiesterase; Provisional; Region: ugpQ; PRK09454
198214009992	Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; Region: GDPD_EcUgpQ_like; cd08562
198214009993	putative active site [active]
198214009994	catalytic site [active]
198214009995	putative metal binding site [ion binding]; other site
198214009996	Similar to Escherichia coli K12 ATP-binding component of sn-glycerol 3-phosphate transport system gi: 1789859 (370 aa). BLAST with identity of 96% in 789 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214009997	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214009998	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
198214009999	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010000	dimer interface [polypeptide binding]; other site
198214010001	conserved gate region; other site
198214010002	putative PBP binding loops; other site
198214010003	ABC-ATPase subunit interface; other site
198214010004	ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177
198214010005	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010006	dimer interface [polypeptide binding]; other site
198214010007	conserved gate region; other site
198214010008	putative PBP binding loops; other site
198214010009	ABC-ATPase subunit interface; other site
198214010010	glycerol-3-phosphate transporter periplasmic binding protein; Provisional; Region: PRK10974
198214010011	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: UgpB; COG1653
198214010012	leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livF; PRK11614
198214010013	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
198214010014	Walker A/P-loop; other site
198214010015	ATP binding site [chemical binding]; other site
198214010016	Q-loop/lid; other site
198214010017	ABC transporter signature motif; other site
198214010018	Walker B; other site
198214010019	D-loop; other site
198214010020	H-loop/switch region; other site
198214010021	leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livG; PRK11300
198214010022	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
198214010023	Walker A/P-loop; other site
198214010024	ATP binding site [chemical binding]; other site
198214010025	Q-loop/lid; other site
198214010026	ABC transporter signature motif; other site
198214010027	Walker B; other site
198214010028	D-loop; other site
198214010029	H-loop/switch region; other site
198214010030	leucine/isoleucine/valine transporter permease subunit; Provisional; Region: livM; PRK11301
198214010031	Domain of unknown function (DUF3382); Region: DUF3382; pfam11862
198214010032	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
198214010033	TM-ABC transporter signature motif; other site
198214010034	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
198214010035	TM-ABC transporter signature motif; other site
198214010036	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
198214010037	dimerization interface [polypeptide binding]; other site
198214010038	Receptor family ligand binding region; Region: ANF_receptor; pfam01094
198214010039	ligand binding site [chemical binding]; other site
198214010040	Acetyltransferase (GNAT) domain; Region: DUF3749; pfam12568
198214010041	Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); Region: PBP1_ABC_LIVBP_like; cd06342
198214010042	dimerization interface [polypeptide binding]; other site
198214010043	Receptor family ligand binding region; Region: ANF_receptor; pfam01094
198214010044	ligand binding site [chemical binding]; other site
198214010045	RNA polymerase factor sigma-32; Reviewed; Region: PRK06596
198214010046	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
198214010047	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
198214010048	DNA binding residues [nucleotide binding]
198214010049	cell division ABC transporter subunit FtsX; Provisional; Region: ftsX; PRK11026
198214010050	putative protein insertion permease FtsX; Region: ftsX; TIGR00439
198214010051	cell division protein FtsE; Provisional; Region: PRK10908
198214010052	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214010053	Walker A/P-loop; other site
198214010054	ATP binding site [chemical binding]; other site
198214010055	Q-loop/lid; other site
198214010056	ABC transporter signature motif; other site
198214010057	Walker B; other site
198214010058	D-loop; other site
198214010059	H-loop/switch region; other site
198214010060	Mitochondria Localisation Sequence; Region: AIF-MLS; pfam14962
198214010061	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
198214010062	SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881
198214010063	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
198214010064	P loop; other site
198214010065	GTP binding site [chemical binding]; other site
198214010066	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214010067	S-adenosylmethionine binding site [chemical binding]; other site
198214010068	hypothetical protein; Provisional; Region: PRK10910
198214010069	Protein of unknown function (DUF2500); Region: DUF2500; pfam10694
198214010070	Predicted membrane protein [Function unknown]; Region: COG3714
198214010071	zinc/cadmium/mercury/lead-transporting ATPase; Provisional; Region: zntA; PRK11033
198214010072	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
198214010073	metal-binding site [ion binding]
198214010074	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
198214010075	Soluble P-type ATPase [General function prediction only]; Region: COG4087
198214010076	SirA (also known as UvrY,  and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA.  A...; Region: SirA; cd03423
198214010077	CPxP  motif; other site
198214010078	hypothetical protein; Provisional; Region: PRK11212
198214010079	hypothetical protein; Provisional; Region: PRK11615
198214010080	major facilitator superfamily transporter; Provisional; Region: PRK05122
198214010081	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010082	putative substrate translocation pore; other site
198214010083	Domain of unknown function DUF20; Region: UPF0118; cl00465
198214010084	holo-(acyl carrier protein) synthase 2; Provisional; Region: PRK10351
198214010085	4'-phosphopantetheinyl transferase superfamily; Region: ACPS; pfam01648
198214010086	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
198214010087	The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA; cd08489
198214010088	substrate binding site [chemical binding]; other site
198214010089	nickel transporter permease NikB; Provisional; Region: PRK10352
198214010090	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010091	dimer interface [polypeptide binding]; other site
198214010092	conserved gate region; other site
198214010093	putative PBP binding loops; other site
198214010094	ABC-ATPase subunit interface; other site
198214010095	nickel transporter permease NikC; Provisional; Region: nikC; PRK10417
198214010096	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010097	dimer interface [polypeptide binding]; other site
198214010098	conserved gate region; other site
198214010099	putative PBP binding loops; other site
198214010100	ABC-ATPase subunit interface; other site
198214010101	nickel transporter ATP-binding protein NikD; Provisional; Region: nikD; PRK10418
198214010102	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214010103	Walker A/P-loop; other site
198214010104	ATP binding site [chemical binding]; other site
198214010105	Q-loop/lid; other site
198214010106	ABC transporter signature motif; other site
198214010107	Walker B; other site
198214010108	D-loop; other site
198214010109	H-loop/switch region; other site
198214010110	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214010111	nickel transporter ATP-binding protein NikE; Provisional; Region: nikE; PRK10419
198214010112	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214010113	Walker A/P-loop; other site
198214010114	ATP binding site [chemical binding]; other site
198214010115	Q-loop/lid; other site
198214010116	ABC transporter signature motif; other site
198214010117	Walker B; other site
198214010118	D-loop; other site
198214010119	H-loop/switch region; other site
198214010120	nickel responsive regulator; Provisional; Region: PRK02967
198214010121	NikR C terminal nickel binding domain; Region: NikR_C; pfam08753
198214010122	Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]; Region: HicB; COG4226
198214010123	HicB family; Region: HicB; pfam05534
198214010124	Structural glycoprotein p40/gp41 conserved region; Region: Baculo_gp41; pfam04700
198214010125	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
198214010126	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
198214010127	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
198214010128	ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]; Region: COG1123
198214010129	Walker A/P-loop; other site
198214010130	ATP binding site [chemical binding]; other site
198214010131	Q-loop/lid; other site
198214010132	ABC transporter signature motif; other site
198214010133	Walker B; other site
198214010134	D-loop; other site
198214010135	H-loop/switch region; other site
198214010136	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214010137	Walker A/P-loop; other site
198214010138	ATP binding site [chemical binding]; other site
198214010139	Q-loop/lid; other site
198214010140	ABC transporter signature motif; other site
198214010141	Walker B; other site
198214010142	D-loop; other site
198214010143	H-loop/switch region; other site
198214010144	ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: COG0842
198214010145	ABC-2 family transporter protein; Region: ABC2_membrane_2; pfam12679
198214010146	HlyD family secretion protein; Region: HlyD; pfam00529
198214010147	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214010148	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214010149	Domain of unknown function (DUF4049); Region: DUF4049; pfam13258
198214010150	Domain of unknown function (DUF4049); Region: DUF4049; pfam13258
198214010151	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789905 (384 aa). BLAST with identity of 96% in 375 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010152	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cl17355
198214010153	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
198214010154	DNA binding site [nucleotide binding]
198214010155	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
198214010156	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214010157	DNA binding residues [nucleotide binding]
198214010158	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
198214010159	Outer membrane usher protein; Region: Usher; pfam00577
198214010160	PapC C-terminal domain; Region: PapC_C; pfam13953
198214010161	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214010162	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010163	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214010164	HTH-like domain; Region: HTH_21; pfam13276
198214010165	Integrase core domain; Region: rve; pfam00665
198214010166	Integrase core domain; Region: rve_3; pfam13683
198214010167	Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers...; Region: gram_neg_porins; cd00342
198214010168	eyelet of channel; other site
198214010169	trimer interface [polypeptide binding]; other site
198214010170	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010171	Transposase; Region: HTH_Tnp_1; pfam01527
198214010172	putative transposase OrfB; Reviewed; Region: PHA02517
198214010173	HTH-like domain; Region: HTH_21; pfam13276
198214010174	Integrase core domain; Region: rve; pfam00665
198214010175	Integrase core domain; Region: rve_2; pfam13333
198214010176	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010177	Similar to Escherichia coli K12  transport system permease gi: 1789669 (369 aa). BLAST with identity of 99% in 187 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214010178	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214010179	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
198214010180	substrate binding pocket [chemical binding]; other site
198214010181	membrane-bound complex binding site; other site
198214010182	hinge residues; other site
198214010183	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010184	Predicted flavoproteins [General function prediction only]; Region: COG2081
198214010185	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214010186	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
198214010187	universal stress protein UspB; Provisional; Region: PRK04960
198214010188	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
198214010189	Ligand Binding Site [chemical binding]; other site
198214010190	Similar to Escherichia coli K12  transport protein gi: 1789911 (490 aa). BLAST with identity of 98% in 489 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010191	putative methyltransferase; Provisional; Region: PRK10742
198214010192	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214010193	S-adenosylmethionine binding site [chemical binding]; other site
198214010194	Zn-dependent oligopeptidases [Amino acid transport and metabolism]; Region: Dcp; COG0339
198214010195	Peptidase family M3 dipeptidyl carboxypeptidase (DCP); Region: M3A_DCP; cd06456
198214010196	active site
198214010197	Zn binding site [ion binding]; other site
198214010198	Protein involved in catabolism of external DNA [General function prediction only]; Region: ComJ; COG2961
198214010199	glutathione reductase; Validated; Region: PRK06116
198214010200	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214010201	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214010202	Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; Region: Pyr_redox_dim; pfam02852
198214010203	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010204	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010205	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010206	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010207	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214010208	dimerization interface [polypeptide binding]; other site
198214010209	putative DNA binding site [nucleotide binding]; other site
198214010210	putative Zn2+ binding site [ion binding]; other site
198214010211	Anion permease ArsB.  These permeases have been shown to export arsenate and antimonite in eubacteria and archaea.  A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a...; Region: ArsB_permease; cd01118
198214010212	Citrate transporter; Region: CitMHS; pfam03600
198214010213	transmembrane helices; other site
198214010214	Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034
198214010215	catalytic residues [active]
198214010216	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010217	Predicted permeases [General function prediction only]; Region: COG0701
198214010218	outer membrane lipoprotein, Slp family; Region: slp; TIGR00752
198214010219	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
198214010220	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214010221	DNA binding residues [nucleotide binding]
198214010222	dimerization interface [polypeptide binding]; other site
198214010223	Similar to Escherichia coli K12  transport ATPase gi: 1789924 (216 aa). BLAST with identity of 99% in 215 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214010224	acid-resistance protein; Provisional; Region: hdeB; PRK11566
198214010225	acid-resistance protein; Provisional; Region: PRK10208
198214010226	acid-resistance membrane protein; Provisional; Region: PRK10209
198214010227	Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the...; Region: FTBP_aldolase_II; cl17181
198214010228	Similar to Escherichia coli K12  membrane protein gi: 1789929 (386 aa). BLAST with identity of 99% in 302 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214010229	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010230	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010231	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010232	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010233	Neutral trehalase [Carbohydrate transport and metabolism]; Region: TreA; COG1626
198214010234	trehalase; Provisional; Region: treF; PRK13270
198214010235	Similar to Shigella flexneri conserved hypothetical protein ref: NP_085397.1 (448 aa). BLAST with identity of 77% in 448 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010236	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
198214010237	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214010238	DNA binding residues [nucleotide binding]
198214010239	dimerization interface [polypeptide binding]; other site
198214010240	Transcriptional regulator [Transcription]; Region: LysR; COG0583
198214010241	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214010242	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
198214010243	putative effector binding pocket; other site
198214010244	putative dimerization interface [polypeptide binding]; other site
198214010245	inner membrane protein YhjD; Region: TIGR00766
198214010246	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010247	metabolite-proton symporter; Region: 2A0106; TIGR00883
198214010248	putative substrate translocation pore; other site
198214010249	Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]; Region: AsmA; COG2982
198214010250	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
198214010251	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214010252	2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166
198214010253	substrate binding site [chemical binding]; other site
198214010254	ATP binding site [chemical binding]; other site
198214010255	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
198214010256	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
198214010257	C4-dicarboxylate transporter DctA; Reviewed; Region: PRK01663
198214010258	putative diguanylate cyclase; Provisional; Region: PRK13561
198214010259	HAMP domain; Region: HAMP; pfam00672
198214010260	diguanylate cyclase; Region: GGDEF; smart00267
198214010261	metal binding site [ion binding]; metal-binding site
198214010262	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948
198214010263	Similar to Escherichia coli K12  oxidoreductase subunit gi: 2367239 (1167 aa). BLAST with identity of 98% in 785 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.
198214010264	endo-1,4-D-glucanase; Provisional; Region: PRK11097
198214010265	cellulose synthase regulator protein; Provisional; Region: PRK11114
198214010266	Similar to Escherichia coli K12  cellulose synthase gi: 2367240 (889 aa). BLAST with identity of 98% in 888 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010267	cell division protein; Provisional; Region: PRK10037
198214010268	YhjQ protein; Region: YhjQ; pfam06564
198214010269	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010270	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010271	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010272	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010273	cellulose biosynthesis protein BcsE; Provisional; Region: PRK15045
198214010274	celllulose biosynthesis operon protein BcsF/YhjT; Region: cellullose_BcsF; TIGR03493
198214010275	Protein of unknown function (DUF3260); Region: DUF3260; pfam11658
198214010276	Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940
198214010277	Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940
198214010278	Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940
198214010279	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214010280	threonine/serine transporter TdcC; Provisional; Region: PRK13629; cl17672
198214010281	dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308
198214010282	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214010283	Walker A/P-loop; other site
198214010284	ATP binding site [chemical binding]; other site
198214010285	Q-loop/lid; other site
198214010286	ABC transporter signature motif; other site
198214010287	Walker B; other site
198214010288	D-loop; other site
198214010289	H-loop/switch region; other site
198214010290	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214010291	dipeptide transporter ATP-binding subunit; Provisional; Region: dppD; PRK11022
198214010292	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
198214010293	Walker A/P-loop; other site
198214010294	ATP binding site [chemical binding]; other site
198214010295	Q-loop/lid; other site
198214010296	ABC transporter signature motif; other site
198214010297	Walker B; other site
198214010298	D-loop; other site
198214010299	H-loop/switch region; other site
198214010300	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
198214010301	dipeptide transporter; Provisional; Region: PRK10913
198214010302	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
198214010303	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010304	dimer interface [polypeptide binding]; other site
198214010305	conserved gate region; other site
198214010306	putative PBP binding loops; other site
198214010307	ABC-ATPase subunit interface; other site
198214010308	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
198214010309	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010310	dimer interface [polypeptide binding]; other site
198214010311	conserved gate region; other site
198214010312	putative PBP binding loops; other site
198214010313	ABC-ATPase subunit interface; other site
198214010314	antimicrobial peptide ABC transporter periplasmic binding protein SapA; Provisional; Region: PRK15109
198214010315	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
198214010316	peptide binding site [polypeptide binding]; other site
198214010317	phosphoethanolamine transferase; Provisional; Region: PRK11560
198214010318	Domain of unknown function (DUF1705); Region: DUF1705; pfam08019
198214010319	Sulfatase; Region: Sulfatase; pfam00884
198214010320	oxalate/formate antiporter family transporter; Region: 2A0111; TIGR00890
198214010321	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010322	putative substrate translocation pore; other site
198214010323	Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion [Cell motility and secretion]; Region: COG5571
198214010324	3-methyl-adenine DNA glycosylase I; Provisional; Region: PRK10353
198214010325	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
198214010326	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214010327	Coenzyme A binding pocket [chemical binding]; other site
198214010328	molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509
198214010329	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_DMSOR-BSOR-TMAOR; cd02769
198214010330	molybdopterin cofactor binding site [chemical binding]; other site
198214010331	substrate binding site [chemical binding]; other site
198214010332	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_CT_DMSOR-BSOR-TMAOR; cd02793
198214010333	molybdopterin cofactor binding site; other site
198214010334	putative outer membrane lipoprotein; Provisional; Region: PRK10510
198214010335	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
198214010336	ligand binding site [chemical binding]; other site
198214010337	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
198214010338	D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); Region: GDH; cd05301
198214010339	dimerization interface [polypeptide binding]; other site
198214010340	ligand binding site [chemical binding]; other site
198214010341	NADP binding site [chemical binding]; other site
198214010342	catalytic site [active]
198214010343	Protein of unknown function (DUF3053); Region: DUF3053; pfam11254
198214010344	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
198214010345	DNA-binding site [nucleotide binding]; DNA binding site
198214010346	RNA-binding motif; other site
198214010347	putative transposase OrfB; Reviewed; Region: PHA02517
198214010348	HTH-like domain; Region: HTH_21; pfam13276
198214010349	Integrase core domain; Region: rve; pfam00665
198214010350	Integrase core domain; Region: rve_2; pfam13333
198214010351	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010352	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214010353	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214010354	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010355	Haem-binding domain; Region: Haem_bd; pfam14376
198214010356	Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858
198214010357	Di-haem cytochrome c peroxidase; Region: CCP_MauG; pfam03150
198214010358	DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and...; Region: DOPA_deC_like; cd06450
198214010359	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214010360	catalytic residue [active]
198214010361	DNA-binding transcriptional regulator GadX; Provisional; Region: PRK09978
198214010362	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214010363	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214010364	transcriptional regulator YdeO; Provisional; Region: PRK09940
198214010365	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214010366	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214010367	Similar to Escherichia coli K12  membrane protein gi: 1789929 (386 aa). BLAST with identity of 99% in 85 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214010368	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010369	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010370	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010371	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010372	glycyl-tRNA synthetase, tetrameric type, beta subunit; Region: glyS; TIGR00211
198214010373	Glycyl-tRNA synthetase beta subunit; Region: tRNA_synt_2f; pfam02092
198214010374	DALR anticodon binding domain; Region: DALR_1; pfam05746
198214010375	anticodon binding site; other site
198214010376	tRNA binding surface [nucleotide binding]; other site
198214010377	Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733
198214010378	dimer interface [polypeptide binding]; other site
198214010379	motif 1; other site
198214010380	active site
198214010381	motif 2; other site
198214010382	motif 3; other site
198214010383	YsaB-like lipoprotein; Region: YsaB; pfam13983
198214010384	Predicted O-acyltransferase [General function prediction only]; Region: COG3274
198214010385	hypothetical protein; Provisional; Region: PRK11383
198214010386	yiaA/B two helix domain; Region: YiaAB; pfam05360
198214010387	yiaA/B two helix domain; Region: YiaAB; pfam05360
198214010388	hypothetical protein; Provisional; Region: PRK11403
198214010389	yiaA/B two helix domain; Region: YiaAB; pfam05360
198214010390	xylulokinase; Provisional; Region: PRK15027
198214010391	Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases; Region: FGGY_D-XK_EcXK-like; cd07808
198214010392	N- and C-terminal domain interface [polypeptide binding]; other site
198214010393	active site
198214010394	MgATP binding site [chemical binding]; other site
198214010395	catalytic site [active]
198214010396	metal binding site [ion binding]; metal-binding site
198214010397	xylulose binding site [chemical binding]; other site
198214010398	homodimer interface [polypeptide binding]; other site
198214010399	Similar to Escherichia coli K12 D-xylose isomerase gi: 1789988 (441 aa). BLAST with identity of 99% in 440 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010400	ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: XylF; COG4213
198214010401	Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_xylose_binding; cd01538
198214010402	putative ligand binding site [chemical binding]; other site
198214010403	xylose transporter ATP-binding subunit; Provisional; Region: PRK13549
198214010404	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
198214010405	Walker A/P-loop; other site
198214010406	ATP binding site [chemical binding]; other site
198214010407	Q-loop/lid; other site
198214010408	ABC transporter signature motif; other site
198214010409	Walker B; other site
198214010410	D-loop; other site
198214010411	H-loop/switch region; other site
198214010412	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
198214010413	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214010414	TM-ABC transporter signature motif; other site
198214010415	Similar to Escherichia coli K12  regulator of xyl operon gi: 1789993 (393 aa). BLAST with identity of 99% in 393 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010416	hypothetical protein; Provisional; Region: PRK10356
198214010417	Lysozyme subfamily 2; Region: LYZ2; smart00047
198214010418	alpha-amylase; Reviewed; Region: malS; PRK09505
198214010419	Alpha amylase catalytic domain family; Region: AmyAc_family; cl07893
198214010420	active site
198214010421	catalytic site [active]
198214010422	valine--pyruvate transaminase; Provisional; Region: avtA; PRK09440
198214010423	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214010424	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214010425	homodimer interface [polypeptide binding]; other site
198214010426	catalytic residue [active]
198214010427	Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]; Region: HycB; COG1142
198214010428	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214010429	Transcriptional regulator [Transcription]; Region: IclR; COG1414
198214010430	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
198214010431	Bacterial transcriptional regulator; Region: IclR; pfam01614
198214010432	2,3-diketo-L-gulonate reductase; Provisional; Region: PRK13260
198214010433	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010434	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010435	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010436	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010437	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790002 (158 aa). BLAST with identity of 99% in 106 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214010438	L-dehydroascorbate transporter large permease subunit; Provisional; Region: PRK15060
198214010439	DctM-like transporters; Region: DctM; pfam06808
198214010440	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010441	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010442	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010443	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010444	Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like; Region: ALDH_ACDHII_AcoD-like; cd07559
198214010445	NAD(P) binding site [chemical binding]; other site
198214010446	catalytic residues [active]
198214010447	Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria; Region: LPO; cd08176
198214010448	dimer interface [polypeptide binding]; other site
198214010449	active site
198214010450	metal binding site [ion binding]; metal-binding site
198214010451	selenocysteinyl-tRNA-specific translation factor; Provisional; Region: PRK10512
198214010452	SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; Region: SelB; cd04171
198214010453	G1 box; other site
198214010454	putative GEF interaction site [polypeptide binding]; other site
198214010455	GTP/Mg2+ binding site [chemical binding]; other site
198214010456	Switch I region; other site
198214010457	G2 box; other site
198214010458	G3 box; other site
198214010459	Switch II region; other site
198214010460	G4 box; other site
198214010461	G5 box; other site
198214010462	selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several...; Region: selB_II; cd03696
198214010463	This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements:...; Region: selB_III; cd04094
198214010464	Elongation factor SelB, winged helix; Region: SelB-wing_2; pfam09106
198214010465	Elongation factor SelB, winged helix; Region: SelB-wing_3; pfam09107
198214010466	selenocysteine synthase; Provisional; Region: PRK04311
198214010467	Selenocysteine synthase N terminal; Region: Se-cys_synth_N; pfam12390
198214010468	L-seryl-tRNA selenium transferase; Region: SelA; pfam03841
198214010469	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214010470	catalytic residue [active]
198214010471	putative glutathione S-transferase; Provisional; Region: PRK10357
198214010472	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
198214010473	C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases; Region: GST_C_6; cd03205
198214010474	dimer interface [polypeptide binding]; other site
198214010475	N-terminal domain interface [polypeptide binding]; other site
198214010476	putative substrate binding pocket (H-site) [chemical binding]; other site
198214010477	Multidrug resistance efflux pump [Defense mechanisms]; Region: EmrA; COG1566
198214010478	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214010479	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214010480	Protein of unknown function (DUF3302); Region: DUF3302; pfam11742
198214010481	PTS system mannitol-specific transporter subunit IICBA; Provisional; Region: PRK15083
198214010482	PTS system, mannitol-specific IIC component; Region: mtlA; TIGR00851
198214010483	PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane...; Region: PTS_IIB_mannitol; cd05567
198214010484	active site
198214010485	P-loop; other site
198214010486	phosphorylation site [posttranslational modification]
198214010487	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214010488	active site
198214010489	phosphorylation site [posttranslational modification]
198214010490	mannitol-1-phosphate 5-dehydrogenase; Provisional; Region: PRK02318
198214010491	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
198214010492	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
198214010493	mannitol repressor protein; Provisional; Region: mtlR; PRK11001
198214010494	hypothetical protein; Provisional; Region: PRK11020
198214010495	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010496	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010497	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010498	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010499	Protein of unknown function (DUF3251); Region: DUF3251; cl08186
198214010500	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
198214010501	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
198214010502	trimer interface [polypeptide binding]; other site
198214010503	YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820
198214010504	trimer interface [polypeptide binding]; other site
198214010505	YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820
198214010506	trimer interface [polypeptide binding]; other site
198214010507	Autotransporter adhesin [Intracellular trafficking and secretion / Extracellular structures]; Region: Hia; COG5295
198214010508	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
198214010509	trimer interface [polypeptide binding]; other site
198214010510	Coiled stalk of trimeric autotransporter adhesin; Region: YadA_stalk; pfam05662
198214010511	Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507
198214010512	Coiled stalk of trimeric autotransporter adhesin; Region: YadA_stalk; pfam05662
198214010513	YadA-like C-terminal region; Region: YadA_anchor; pfam03895
198214010514	L-lactate permease; Provisional; Region: PRK10420
198214010515	DNA-binding transcriptional repressor LldR; Provisional; Region: PRK10421
198214010516	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214010517	DNA-binding site [nucleotide binding]; DNA binding site
198214010518	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214010519	L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197
198214010520	Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate...; Region: alpha_hydroxyacid_oxid_FMN; cd02809
198214010521	active site
198214010522	substrate binding site [chemical binding]; other site
198214010523	FMN binding site [chemical binding]; other site
198214010524	putative catalytic residues [active]
198214010525	putative rRNA methylase; Provisional; Region: PRK10358
198214010526	serine acetyltransferase; Provisional; Region: cysE; PRK11132
198214010527	Serine acetyltransferase, N-terminal; Region: SATase_N; smart00971
198214010528	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
198214010529	trimer interface [polypeptide binding]; other site
198214010530	active site
198214010531	substrate binding site [chemical binding]; other site
198214010532	CoA binding site [chemical binding]; other site
198214010533	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
198214010534	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
198214010535	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
198214010536	Preprotein translocase subunit SecB. SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent...; Region: Translocase_SecB; cd00557
198214010537	SecA binding site; other site
198214010538	Preprotein binding site; other site
198214010539	Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the...; Region: GRX_GRXb_1_3_like; cd03418
198214010540	GSH binding site [chemical binding]; other site
198214010541	catalytic residues [active]
198214010542	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
198214010543	active site residue [active]
198214010544	phosphoglyceromutase; Provisional; Region: PRK05434
198214010545	AmiB activator; Provisional; Region: PRK11637
198214010546	Apolipophorin-III and similar insect proteins; Region: ApoLp-III_like; cl19113
198214010547	HemX; Region: HemX; cl19375
198214010548	Peptidase family M23; Region: Peptidase_M23; pfam01551
198214010549	Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; Region: CE4_DAC2; cd10936
198214010550	putative active site [active]
198214010551	NodB motif; other site
198214010552	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010553	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010554	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010555	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010556	L-threonine 3-dehydrogenase; Validated; Region: tdh; PRK05396
198214010557	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cl16912
198214010558	NAD(P) binding site [chemical binding]; other site
198214010559	8-amino-7-oxononanoate synthase; Region: bioF; TIGR00858
198214010560	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
198214010561	substrate-cofactor binding pocket; other site
198214010562	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214010563	catalytic residue [active]
198214010564	hypothetical protein; Provisional; Region: PRK11346
198214010565	ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248
198214010566	ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional; Region: rfaD; PRK11150
198214010567	NADP binding site [chemical binding]; other site
198214010568	homopentamer interface [polypeptide binding]; other site
198214010569	substrate binding site [chemical binding]; other site
198214010570	active site
198214010571	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
198214010572	putative active site [active]
198214010573	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
198214010574	putative active site [active]
198214010575	Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfaL; COG3307
198214010576	O-antigen ligase RfaL; Provisional; Region: PRK15487
198214010577	lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional; Region: PRK15484
198214010578	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
198214010579	lipopolysaccharide 1,3-galactosyltransferase; Provisional; Region: PRK15171
198214010580	A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; Region: GT8_A4GalT_like; cd04194
198214010581	Ligand binding site; other site
198214010582	metal-binding site
198214010583	Glycosyl transferase family 8 C-terminal; Region: Glyco_transf_8C; pfam08437
198214010584	Lipopolysaccharide core biosynthesis protein (WaaY); Region: WaaY; pfam06176
198214010585	lipopolysaccharide 1,3-galactosyltransferase; Provisional; Region: PRK15171
198214010586	A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface; Region: GT8_A4GalT_like; cd04194
198214010587	Ligand binding site; other site
198214010588	metal-binding site
198214010589	Glycosyl transferase family 8 C-terminal; Region: Glyco_transf_8C; pfam08437
198214010590	lipopolysaccharide core heptose(I) kinase RfaP; Provisional; Region: PRK15123
198214010591	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
198214010592	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
198214010593	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
198214010594	putative active site [active]
198214010595	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010596	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010597	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010598	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010599	3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749
198214010600	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413
198214010601	Glycosyl transferases group 1; Region: Glycos_transf_1; cl19138
198214010602	Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163
198214010603	active site
198214010604	(T/H)XGH motif; other site
198214010605	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated; Region: PRK01103
198214010606	N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966
198214010607	DNA binding site [nucleotide binding]
198214010608	catalytic residue [active]
198214010609	H2TH interface [polypeptide binding]; other site
198214010610	putative catalytic residues [active]
198214010611	turnover-facilitating residue; other site
198214010612	intercalation triad [nucleotide binding]; other site
198214010613	8OG recognition residue [nucleotide binding]; other site
198214010614	putative reading head residues; other site
198214010615	Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831
198214010616	Zinc finger found in FPG and IleRS; Region: zf-FPG_IleRS; pfam06827
198214010617	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
198214010618	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
198214010619	hypothetical protein; Reviewed; Region: PRK00024
198214010620	Mov34/MPN/PAD-1 family; Region: MPN_DUF2466; cd08071
198214010621	MPN+ (JAMM) motif; other site
198214010622	Zinc-binding site [ion binding]; other site
198214010623	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579
198214010624	Flavoprotein; Region: Flavoprotein; cl19190
198214010625	DNA / pantothenate metabolizm flavoprotein; Region: DFP; pfam04127
198214010626	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
198214010627	trimer interface [polypeptide binding]; other site
198214010628	active site
198214010629	division inhibitor protein; Provisional; Region: slmA; PRK09480
198214010630	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214010631	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
198214010632	active site
198214010633	ribonuclease PH; Reviewed; Region: rph; PRK00173
198214010634	Ribonuclease PH; Region: RNase_PH_bact; cd11362
198214010635	hexamer interface [polypeptide binding]; other site
198214010636	active site
198214010637	hypothetical protein; Provisional; Region: PRK11820
198214010638	YicC-like family, N-terminal region; Region: YicC_N; pfam03755
198214010639	Domain of unknown function (DUF1732); Region: DUF1732; pfam08340
198214010640	DNA-damage-inducible protein D; Provisional; Region: dinD; PRK11525
198214010641	BRO family, N-terminal domain; Region: Bro-N; pfam02498
198214010642	Predicted membrane protein [Function unknown]; Region: COG2860
198214010643	UPF0126 domain; Region: UPF0126; pfam03458
198214010644	UPF0126 domain; Region: UPF0126; pfam03458
198214010645	NAD-dependent DNA ligase LigB; Reviewed; Region: ligB; PRK08097
198214010646	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cl03295
198214010647	nucleotide binding pocket [chemical binding]; other site
198214010648	K-X-D-G motif; other site
198214010649	catalytic site [active]
198214010650	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
198214010651	Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174
198214010652	Guanylate kinase; Region: Guanylate_kin; pfam00625
198214010653	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
198214010654	catalytic site [active]
198214010655	G-X2-G-X-G-K; other site
198214010656	DNA-directed RNA polymerase, omega subunit; Region: rpoZ; TIGR00690
198214010657	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional; Region: PRK11092
198214010658	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
198214010659	Zn2+ binding site [ion binding]; other site
198214010660	Mg2+ binding site [ion binding]; other site
198214010661	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
198214010662	synthetase active site [active]
198214010663	NTP binding site [chemical binding]; other site
198214010664	metal binding site [ion binding]; metal-binding site
198214010665	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
198214010666	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
198214010667	tRNA guanosine-2'-O-methyltransferase; Provisional; Region: PRK11081
198214010668	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
198214010669	SpoU, rRNA methylase, C-terminal; Region: SpoU_methylas_C; pfam12105
198214010670	ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917
198214010671	RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a...; Region: RecG_wedge_OBF; cd04488
198214010672	generic binding surface II; other site
198214010673	ssDNA binding site; other site
198214010674	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214010675	ATP binding site [chemical binding]; other site
198214010676	putative Mg++ binding site [ion binding]; other site
198214010677	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214010678	nucleotide binding region [chemical binding]; other site
198214010679	ATP-binding site [chemical binding]; other site
198214010680	sodium--glutamate symport carrier (gltS); Region: gltS; TIGR00210
198214010681	Xanthine/uracil permeases [Nucleotide transport and metabolism]; Region: UraA; COG2233
198214010682	Sulfate transporter family; Region: Sulfate_transp; cl19250
198214010683	AsmA family; Region: AsmA; pfam05170
198214010684	Domain of Unknown Function (DUF748); Region: DUF748; pfam05359
198214010685	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
198214010686	putative alpha-glucosidase; Provisional; Region: PRK10658
198214010687	Galactose mutarotase-like; Region: Gal_mutarotas_2; pfam13802
198214010688	YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a...; Region: GH31_xylosidase_YicI; cd06593
198214010689	active site
198214010690	homotrimer interface [polypeptide binding]; other site
198214010691	catalytic site [active]
198214010692	homohexamer (dimer of homotrimers) interface [polypeptide binding]; other site
198214010693	Similar to Escherichia coli K12  permease gi: 2367257 (480 aa). BLAST with identity of 99% in 480 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010694	SHI-2
198214010695	integrase; Provisional; Region: PRK09692
198214010696	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
198214010697	active site
198214010698	Int/Topo IB signature motif; other site
198214010699	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
198214010700	TPR motif; other site
198214010701	binding surface
198214010702	Transposase; Region: HTH_Tnp_1; cl17663
198214010703	Transposase; Region: HTH_Tnp_1; cl17663
198214010704	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010705	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214010706	HTH-like domain; Region: HTH_21; pfam13276
198214010707	Integrase core domain; Region: rve; pfam00665
198214010708	Integrase core domain; Region: rve_3; pfam13683
198214010709	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214010710	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010711	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010712	Transposase DNA-binding; Region: Tnp_DNA_bind; pfam14706
198214010713	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010714	putative substrate translocation pore; other site
198214010715	Major Facilitator Superfamily; Region: MFS_1; pfam07690
198214010716	Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: RhbC; COG4264
198214010717	IucA / IucC family; Region: IucA_IucC; pfam04183
198214010718	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
198214010719	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
198214010720	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
198214010721	Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: RhbC; COG4264
198214010722	IucA / IucC family; Region: IucA_IucC; pfam04183
198214010723	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
198214010724	Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: IucD; COG3486
198214010725	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl19134
198214010726	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
198214010727	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
198214010728	N-terminal plug; other site
198214010729	ligand-binding site [chemical binding]; other site
198214010730	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
198214010731	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214010732	HTH-like domain; Region: HTH_21; pfam13276
198214010733	Integrase core domain; Region: rve; pfam00665
198214010734	Integrase core domain; Region: rve_3; pfam13683
198214010735	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214010736	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010737	P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimD; COG3188
198214010738	PapC N-terminal domain; Region: PapC_N; pfam13954
198214010739	Outer membrane usher protein; Region: Usher; pfam00577
198214010740	PapC C-terminal domain; Region: PapC_C; pfam13953
198214010741	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010742	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010743	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010744	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010745	Fimbrial protein; Region: Fimbrial; cl01416
198214010746	phosphate ABC transporter periplasmic substrate-binding protein PstS; Provisional; Region: PRK10918
198214010747	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214010748	ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; Region: PstC; COG0573
198214010749	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010750	dimer interface [polypeptide binding]; other site
198214010751	conserved gate region; other site
198214010752	putative PBP binding loops; other site
198214010753	ABC-ATPase subunit interface; other site
198214010754	phosphate transporter permease subunit PtsA; Provisional; Region: pstA; PRK11268
198214010755	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214010756	dimer interface [polypeptide binding]; other site
198214010757	conserved gate region; other site
198214010758	putative PBP binding loops; other site
198214010759	ABC-ATPase subunit interface; other site
198214010760	phosphate transporter ATP-binding protein; Provisional; Region: pstB; PRK10744
198214010761	ATP-binding cassette domain of the phosphate transport system; Region: ABC_PstB_phosphate_transporter; cd03260
198214010762	Walker A/P-loop; other site
198214010763	ATP binding site [chemical binding]; other site
198214010764	Q-loop/lid; other site
198214010765	ABC transporter signature motif; other site
198214010766	Walker B; other site
198214010767	D-loop; other site
198214010768	H-loop/switch region; other site
198214010769	transcriptional regulator PhoU; Provisional; Region: PRK11115
198214010770	PhoU domain; Region: PhoU; pfam01895
198214010771	PhoU domain; Region: PhoU; pfam01895
198214010772	transcriptional antiterminator BglG; Provisional; Region: PRK09772
198214010773	CAT RNA binding domain; Region: CAT_RBD; pfam03123
198214010774	PRD domain; Region: PRD; pfam00874
198214010775	PRD domain; Region: PRD; pfam00874
198214010776	PTS system beta-glucoside-specific transporter subunits IIABC; Provisional; Region: PRK09824
198214010777	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214010778	active site turn [active]
198214010779	phosphorylation site [posttranslational modification]
198214010780	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
198214010781	PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_glc; cd00210
198214010782	HPr interaction site; other site
198214010783	glycerol kinase (GK) interaction site [polypeptide binding]; other site
198214010784	active site
198214010785	phosphorylation site [posttranslational modification]
198214010786	Similar to Escherichia coli K12 phospho-beta-glucosidase B; cryptic gi: 2367270 (471 aa). BLAST with identity of 98% in 729 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214010787	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010788	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010789	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010790	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010791	Maltoporin periplasmic N-terminal extension; Region: Sugarporin_N; pfam11471
198214010792	The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel...; Region: Maltoporin-like; cd01346
198214010793	maltoporin; Provisional; Region: lamB; PRK09360
198214010794	trimer interface; other site
198214010795	sugar binding site [chemical binding]; other site
198214010796	N-terminal Early set domain associated with the catalytic domain of putative esterases; Region: E_set_Esterase_like_N; cd11294
198214010797	Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]; Region: Fes; COG2382
198214010798	Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: COG2819; cl19187
198214010799	GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or...; Region: GlcN6P_deaminase; cd01399
198214010800	active site
198214010801	trimer interface [polypeptide binding]; other site
198214010802	allosteric site; other site
198214010803	active site lid [active]
198214010804	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790153 (196 aa). BLAST with identity of 98% in 888 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214010805	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214010806	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214010807	Homeodomain-like domain; Region: HTH_23; pfam13384
198214010808	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010809	Transposase; Region: HTH_Tnp_1; pfam01527
198214010810	putative inner membrane protein; Provisional; Region: PRK09823
198214010811	Predicted phosphatase/phosphohexomutase [General function prediction only]; Region: COG0637
198214010812	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214010813	active site
198214010814	motif I; other site
198214010815	motif II; other site
198214010816	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
198214010817	Predicted flavoprotein [General function prediction only]; Region: COG0431
198214010818	Phosphopantetheinyl transferase [Coenzyme metabolism]; Region: Sfp; COG2091
198214010819	Similar to Escherichia coli K12  transcriptional regulator LYSR-type gi: 1790147 (320 aa). BLAST with identity of 97% in 742 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214010820	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010821	Transposase; Region: HTH_Tnp_1; pfam01527
198214010822	putative transposase OrfB; Reviewed; Region: PHA02517
198214010823	HTH-like domain; Region: HTH_21; pfam13276
198214010824	Integrase core domain; Region: rve; pfam00665
198214010825	Integrase core domain; Region: rve_3; pfam13683
198214010826	multidrug efflux system protein MdtL; Provisional; Region: PRK10473
198214010827	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010828	putative substrate translocation pore; other site
198214010829	tryptophan permease TnaB; Provisional; Region: PRK09664
198214010830	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
198214010831	Tryptophanase [Amino acid transport and metabolism]; Region: TnaA; COG3033
198214010832	tryptophanase, leader peptide-associated; Region: tnaA_trp_ase; TIGR02617
198214010833	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
198214010834	catalytic residue [active]
198214010835	Tryptophanese operon leader peptide; Region: Tna_leader; pfam08053
198214010836	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214010837	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214010838	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214010839	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214010840	tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291
198214010841	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
198214010842	trmE is a tRNA modification GTPase; Region: trmE; cd04164
198214010843	G1 box; other site
198214010844	GTP/Mg2+ binding site [chemical binding]; other site
198214010845	Switch I region; other site
198214010846	G2 box; other site
198214010847	Switch II region; other site
198214010848	G3 box; other site
198214010849	G4 box; other site
198214010850	G5 box; other site
198214010851	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
198214010852	membrane protein insertase; Provisional; Region: PRK01318
198214010853	YidC periplasmic domain; Region: YidC_periplas; pfam14849
198214010854	Preprotein translocase subunit YidC [Intracellular trafficking and secretion]; Region: YidC; COG0706
198214010855	ribonuclease P; Reviewed; Region: rnpA; PRK01732
198214010856	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
198214010857	DNA polymerase III subunit beta; Validated; Region: PRK05643
198214010858	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
198214010859	putative DNA binding surface [nucleotide binding]; other site
198214010860	dimer interface [polypeptide binding]; other site
198214010861	beta-clamp/clamp loader binding surface; other site
198214010862	beta-clamp/translesion DNA polymerase binding surface; other site
198214010863	recF protein; Region: recf; TIGR00611
198214010864	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
198214010865	Walker A/P-loop; other site
198214010866	ATP binding site [chemical binding]; other site
198214010867	Q-loop/lid; other site
198214010868	ABC transporter signature motif; other site
198214010869	Walker B; other site
198214010870	D-loop; other site
198214010871	H-loop/switch region; other site
198214010872	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
198214010873	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214010874	ATP binding site [chemical binding]; other site
198214010875	Mg2+ binding site [ion binding]; other site
198214010876	G-X-G motif; other site
198214010877	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
198214010878	anchoring element; other site
198214010879	dimer interface [polypeptide binding]; other site
198214010880	ATP binding site [chemical binding]; other site
198214010881	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
198214010882	active site
198214010883	putative metal-binding site [ion binding]; other site
198214010884	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
198214010885	hypothetical protein; Provisional; Region: PRK11426
198214010886	sugar phosphate phosphatase; Provisional; Region: PRK10513
198214010887	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214010888	active site
198214010889	motif I; other site
198214010890	motif II; other site
198214010891	hypothetical protein; Provisional; Region: PRK10215
198214010892	Transcriptional regulators [Transcription]; Region: FadR; COG2186
198214010893	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214010894	DNA-binding site [nucleotide binding]; DNA binding site
198214010895	FCD domain; Region: FCD; pfam07729
198214010896	2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]; Region: DgoK; COG3734
198214010897	Similar to Escherichia coli K12 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase gi: 2367262 (588 aa). BLAST with identity of 97% in 588 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010898	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010899	D-galactonate transporter; Region: 2A0114; TIGR00893
198214010900	putative substrate translocation pore; other site
198214010901	putative oxidoreductase; Provisional; Region: PRK11445
198214010902	geranylgeranyl reductase family; Region: GG-red-SF; TIGR02032
198214010903	Protein of unknown function (DUF3748); Region: DUF3748; pfam12566
198214010904	hypothetical protein; Provisional; Region: PRK11616
198214010905	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
198214010906	Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins.  IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation...; Region: ACD_IbpA-B_like; cd06470
198214010907	putative dimer interface [polypeptide binding]; other site
198214010908	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
198214010909	Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins.  IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation...; Region: ACD_IbpA-B_like; cd06470
198214010910	putative dimer interface [polypeptide binding]; other site
198214010911	putative transporter; Validated; Region: PRK03818
198214010912	Predicted Permease Membrane Region; Region: Asp-Al_Ex; pfam06826
198214010913	TrkA-C domain; Region: TrkA_C; pfam02080
198214010914	TrkA-C domain; Region: TrkA_C; pfam02080
198214010915	AspT/YidE/YbjL antiporter duplication domain; Region: YidE_YbjL_dupl; TIGR01625
198214010916	Transcriptional regulators [Transcription]; Region: PhnF; COG2188
198214010917	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214010918	DNA-binding site [nucleotide binding]; DNA binding site
198214010919	The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain; Region: UTRA; smart00866
198214010920	PTS system, alpha-glucoside-specific IIBC component; Region: PTS-IIBC-alpha; TIGR02005
198214010921	PTS system, maltose and glucose-specific subfamily, IIC component; Region: pts-Glc; TIGR00852
198214010922	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214010923	active site turn [active]
198214010924	phosphorylation site [posttranslational modification]
198214010925	Similar to Escherichia coli K12 probable 6-phospho-beta-glucosidase gi: 1790115 (213 aa). BLAST with identity of 98% in 213 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214010926	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
198214010927	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214010928	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
198214010929	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214010930	uncharacterized SLC5 subfamily, Escherichia coli YidK-like; solute binding domain; Region: SLC5sbd_YidK; cd10328
198214010931	Na binding site [ion binding]; other site
198214010932	Similar to Escherichia coli K12  sulfatase gi: 1790112 (498 aa). BLAST with identity of 97% in 489 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214010933	Predicted membrane protein [Function unknown]; Region: COG2149
198214010934	Domain of unknown function (DUF202); Region: DUF202; pfam02656
198214010935	Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]; Region: AslB; COG0641
198214010936	multidrug resistance protein D; Provisional; Region: emrD; PRK11652
198214010937	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010938	putative substrate translocation pore; other site
198214010939	acetolactate synthase catalytic subunit; Validated; Region: PRK08155
198214010940	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
198214010941	dimer interface [polypeptide binding]; other site
198214010942	PYR/PP interface [polypeptide binding]; other site
198214010943	TPP binding site [chemical binding]; other site
198214010944	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
198214010945	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
198214010946	TPP-binding site [chemical binding]; other site
198214010947	dimer interface [polypeptide binding]; other site
198214010948	Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]; Region: IlvH; COG0440
198214010949	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
198214010950	putative valine binding site [chemical binding]; other site
198214010951	dimer interface [polypeptide binding]; other site
198214010952	DNA-binding transcriptional activator UhpA; Provisional; Region: PRK10360
198214010953	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214010954	active site
198214010955	phosphorylation site [posttranslational modification]
198214010956	intermolecular recognition site; other site
198214010957	dimerization interface [polypeptide binding]; other site
198214010958	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214010959	DNA binding residues [nucleotide binding]
198214010960	dimerization interface [polypeptide binding]; other site
198214010961	sensory histidine kinase UhpB; Provisional; Region: PRK11644
198214010962	MASE1; Region: MASE1; pfam05231
198214010963	Histidine kinase; Region: HisKA_3; pfam07730
198214010964	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214010965	ATP binding site [chemical binding]; other site
198214010966	Mg2+ binding site [ion binding]; other site
198214010967	G-X-G motif; other site
198214010968	regulatory protein UhpC; Provisional; Region: PRK11663
198214010969	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010970	putative substrate translocation pore; other site
198214010971	sugar phosphate antiporter; Reviewed; Region: uhpT; PRK09556
198214010972	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010973	putative substrate translocation pore; other site
198214010974	cryptic adenine deaminase; Provisional; Region: PRK10027
198214010975	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
198214010976	Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source...; Region: AdeC; cd01295
198214010977	active site
198214010978	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
198214010979	Sulfate transporter family; Region: Sulfate_transp; cl19250
198214010980	Protein of unknown function (DUF1198); Region: DUF1198; pfam06711
198214010981	ribonucleoside transporter; Reviewed; Region: nepI; PRK10213
198214010982	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214010983	putative substrate translocation pore; other site
198214010984	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010985	Transposase; Region: HTH_Tnp_1; pfam01527
198214010986	putative transposase OrfB; Reviewed; Region: PHA02517
198214010987	HTH-like domain; Region: HTH_21; pfam13276
198214010988	Integrase core domain; Region: rve; pfam00665
198214010989	Integrase core domain; Region: rve_3; pfam13683
198214010990	Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395
198214010991	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214010992	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214010993	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214010994	HTH-like domain; Region: HTH_21; pfam13276
198214010995	Integrase core domain; Region: rve; pfam00665
198214010996	Integrase core domain; Region: rve_3; pfam13683
198214010997	fimbrial protein; Provisional; Region: lpfA; PRK15289
198214010998	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214010999	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214011000	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214011001	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
198214011002	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
198214011003	glutaminase active site [active]
198214011004	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
198214011005	dimer interface [polypeptide binding]; other site
198214011006	active site
198214011007	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
198214011008	dimer interface [polypeptide binding]; other site
198214011009	active site
198214011010	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional; Region: glmU; PRK09451
198214011011	N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540
198214011012	Substrate binding site; other site
198214011013	Mg++ binding site; other site
198214011014	N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353
198214011015	active site
198214011016	substrate binding site [chemical binding]; other site
198214011017	CoA binding site [chemical binding]; other site
198214011018	F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571
198214011019	mitochondrial ATP synthase delta subunit; Region: F1-ATPase_delta; cd12152
198214011020	gamma subunit interface [polypeptide binding]; other site
198214011021	epsilon subunit interface [polypeptide binding]; other site
198214011022	LBP interface [polypeptide binding]; other site
198214011023	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
198214011024	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
198214011025	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
198214011026	alpha subunit interaction interface [polypeptide binding]; other site
198214011027	Walker A motif; other site
198214011028	ATP binding site [chemical binding]; other site
198214011029	Walker B motif; other site
198214011030	inhibitor binding site; inhibition site
198214011031	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
198214011032	mitochondrial ATP synthase gamma subunit; Region: F1-ATPase_gamma; cd12151
198214011033	core domain interface [polypeptide binding]; other site
198214011034	delta subunit interface [polypeptide binding]; other site
198214011035	epsilon subunit interface [polypeptide binding]; other site
198214011036	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
198214011037	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
198214011038	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
198214011039	beta subunit interaction interface [polypeptide binding]; other site
198214011040	Walker A motif; other site
198214011041	ATP binding site [chemical binding]; other site
198214011042	Walker B motif; other site
198214011043	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
198214011044	F0F1 ATP synthase subunit delta; Validated; Region: PRK05758
198214011045	F0F1 ATP synthase subunit B; Validated; Region: PRK05759
198214011046	F0F1 ATP synthase subunit B; Provisional; Region: PRK14471; cl17192
198214011047	F0F1 ATP synthase subunit C; Validated; Region: PRK06876
198214011048	F0F1 ATP synthase subunit A; Validated; Region: PRK05815
198214011049	F0F1 ATP synthase subunit I; Validated; Region: PRK08049
198214011050	Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]; Region: GidB; COG0357
198214011051	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214011052	S-adenosylmethionine binding site [chemical binding]; other site
198214011053	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
198214011054	tRNA:m(5)U-54 methyltransferase; Region: gid_trmFO; TIGR00137
198214011055	NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; COG1206
198214011056	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
198214011057	FMN-binding protein MioC; Provisional; Region: PRK09004
198214011058	DNA-binding transcriptional regulator AsnC; Provisional; Region: PRK11179
198214011059	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214011060	putative DNA binding site [nucleotide binding]; other site
198214011061	putative Zn2+ binding site [ion binding]; other site
198214011062	AsnC family; Region: AsnC_trans_reg; pfam01037
198214011063	Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia.  AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II...; Region: AsnA; cd00645
198214011064	dimer interface [polypeptide binding]; other site
198214011065	active site
198214011066	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]; Region: COG2425
198214011067	VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: VWA_YIEM_type; cd01462
198214011068	metal ion-dependent adhesion site (MIDAS); other site
198214011069	regulatory ATPase RavA; Provisional; Region: PRK13531
198214011070	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214011071	Walker A motif; other site
198214011072	ATP binding site [chemical binding]; other site
198214011073	Walker B motif; other site
198214011074	arginine finger; other site
198214011075	Protein of unknown function (DUF3763); Region: DUF3763; pfam12592
198214011076	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214011077	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214011078	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214011079	potassium transport protein Kup; Provisional; Region: trkD; PRK10745
198214011080	D-ribose pyranase; Provisional; Region: PRK11797
198214011081	Similar to Escherichia coli K12 ATP-binding component of D-ribose high-affinity transport system gi: 1790190 (502 aa). BLAST with identity of 98% in 761 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214011082	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214011083	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214011084	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214011085	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214011086	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214011087	TM-ABC transporter signature motif; other site
198214011088	Similar to Escherichia coli K12 D-ribose periplasmic binding protein gi: 1790192 (297 aa). BLAST with identity of 98% in 297 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214011089	Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174
198214011090	substrate binding site [chemical binding]; other site
198214011091	dimer interface [polypeptide binding]; other site
198214011092	ATP binding site [chemical binding]; other site
198214011093	transcriptional repressor RbsR; Provisional; Region: PRK10423
198214011094	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214011095	DNA binding site [nucleotide binding]
198214011096	domain linker motif; other site
198214011097	Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli; Region: PBP1_PurR; cd06275
198214011098	dimerization interface [polypeptide binding]; other site
198214011099	ligand binding site [chemical binding]; other site
198214011100	putative transporter; Provisional; Region: PRK10504
198214011101	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214011102	putative substrate translocation pore; other site
198214011103	Transcriptional regulators [Transcription]; Region: FadR; COG2186
198214011104	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214011105	DNA-binding site [nucleotide binding]; DNA binding site
198214011106	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214011107	transcriptional regulator HdfR; Provisional; Region: PRK03601
198214011108	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214011109	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
198214011110	dimerization interface [polypeptide binding]; other site
198214011111	hypothetical protein; Provisional; Region: PRK11027
198214011112	Similar to Escherichia coli K12  2-component regulator gi: 1790201 (517 aa). BLAST with identity of 97% in 503 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214011113	ilvG operon leader peptide; Provisional; Region: PRK10424
198214011114	acetolactate synthase 2 catalytic subunit; Reviewed; Region: PRK08978
198214011115	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
198214011116	PYR/PP interface [polypeptide binding]; other site
198214011117	dimer interface [polypeptide binding]; other site
198214011118	TPP binding site [chemical binding]; other site
198214011119	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; pfam00205
198214011120	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
198214011121	TPP-binding site [chemical binding]; other site
198214011122	dimer interface [polypeptide binding]; other site
198214011123	acetolactate synthase 2 regulatory subunit; Provisional; Region: ilvM; PRK11152
198214011124	BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids  leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and...; Region: BCAT_beta_family; cd01557
198214011125	homodimer interface [polypeptide binding]; other site
198214011126	substrate-cofactor binding pocket; other site
198214011127	catalytic residue [active]
198214011128	dihydroxy-acid dehydratase; Provisional; Region: PRK12448
198214011129	threonine dehydratase; Reviewed; Region: PRK09224
198214011130	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
198214011131	tetramer interface [polypeptide binding]; other site
198214011132	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214011133	catalytic residue [active]
198214011134	First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_1; cd04906
198214011135	putative Ile/Val binding site [chemical binding]; other site
198214011136	Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase); Region: ACT_ThrD-I_2; cd04907
198214011137	putative Ile/Val binding site [chemical binding]; other site
198214011138	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214011139	DNA-binding transcriptional regulator IlvY; Provisional; Region: PRK11716
198214011140	The C-terminal substrate binding of LysR-type transcriptional regulator IlvY, which activates the expression of ilvC gene that encoding acetohydroxy acid isomeroreductase for the biosynthesis of branched amino acids; contains the type 2 periplasmic bindin; Region: PBP2_IlvY; cd08430
198214011141	putative dimerization interface [polypeptide binding]; other site
198214011142	ketol-acid reductoisomerase; Validated; Region: PRK05225
198214011143	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvN; pfam07991
198214011144	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
198214011145	peptidyl-prolyl cis-trans isomerase C; Provisional; Region: PRK15441
198214011146	Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]; Region: SurA; COG0760
198214011147	ATP-dependent DNA helicase Rep; Provisional; Region: PRK10919
198214011148	Part of AAA domain; Region: AAA_19; pfam13245
198214011149	UvrD-like helicase C-terminal domain; Region: UvrD_C_2; pfam13538
198214011150	guanosine pentaphosphate phosphohydrolase; Provisional; Region: PRK11031
198214011151	Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541
198214011152	ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837
198214011153	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
198214011154	ATP binding site [chemical binding]; other site
198214011155	Mg++ binding site [ion binding]; other site
198214011156	motif III; other site
198214011157	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214011158	nucleotide binding region [chemical binding]; other site
198214011159	ATP-binding site [chemical binding]; other site
198214011160	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
198214011161	catalytic residues [active]
198214011162	putative rho operon leader peptide; Provisional; Region: PRK09979
198214011163	transcription termination factor Rho; Provisional; Region: rho; PRK09376
198214011164	Rho termination factor, N-terminal domain; Region: Rho_N; smart00959
198214011165	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
198214011166	RNA binding site [nucleotide binding]; other site
198214011167	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
198214011168	multimer interface [polypeptide binding]; other site
198214011169	Walker A motif; other site
198214011170	ATP binding site [chemical binding]; other site
198214011171	Walker B motif; other site
198214011172	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; Region: ECA_wecA; TIGR02380
198214011173	This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond...; Region: GT_WecA_like; cd06853
198214011174	Mg++ binding site [ion binding]; other site
198214011175	putative catalytic motif [active]
198214011176	substrate binding site [chemical binding]; other site
198214011177	lipopolysaccharide biosynthesis protein WzzE; Provisional; Region: PRK11638
198214011178	Chain length determinant protein; Region: Wzz; pfam02706
198214011179	G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807
198214011180	UDP-N-acetylglucosamine 2-epimerase; Region: wecB; TIGR00236
198214011181	Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues; Region: GT1_UDP-GlcNAc_2-Epimerase; cd03786
198214011182	active site
198214011183	homodimer interface [polypeptide binding]; other site
198214011184	UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional; Region: wecC; PRK11064
198214011185	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; Region: UDPG_MGDP_dh_N; pfam03721
198214011186	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
198214011187	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
198214011188	dTDP-glucose 4,6-dehydratase; Provisional; Region: PRK10217
198214011189	dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246
198214011190	NAD binding site [chemical binding]; other site
198214011191	substrate binding site [chemical binding]; other site
198214011192	homodimer interface [polypeptide binding]; other site
198214011193	active site
198214011194	G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538
198214011195	glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207
198214011196	substrate binding site; other site
198214011197	tetramer interface; other site
198214011198	TDP-D-fucosamine acetyltransferase; Region: wecD_rffC; TIGR02382
198214011199	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
198214011200	inhibitor-cofactor binding pocket; inhibition site
198214011201	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214011202	catalytic residue [active]
198214011203	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
198214011204	Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins; Region: MATE_like_10; cd13125
198214011205	4-alpha-L-fucosyltransferase glycosyl transferase group 56; Region: Glyco_transf_56; pfam07429
198214011206	putative common antigen polymerase; Provisional; Region: PRK02975
198214011207	The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common...; Region: Glyco_transf_WecG_TagA; cd06533
198214011208	anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942
198214011209	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214011210	FeS/SAM binding site; other site
198214011211	radical SAM additional 4Fe4S-binding SPASM domain; Region: rSAM_more_4Fe4S; TIGR04085
198214011212	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214011213	HTH-like domain; Region: HTH_21; pfam13276
198214011214	Integrase core domain; Region: rve; pfam00665
198214011215	Integrase core domain; Region: rve_3; pfam13683
198214011216	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214011217	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214011218	putative protoheme IX biogenesis protein; Provisional; Region: PRK10747
198214011219	HemY protein N-terminus; Region: HemY_N; pfam07219
198214011220	putative uroporphyrinogen III C-methyltransferase; Provisional; Region: PRK10920
198214011221	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
198214011222	active site
198214011223	porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072
198214011224	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cd00494
198214011225	domain interfaces; other site
198214011226	active site
198214011227	Adenylate cyclase [Nucleotide transport and metabolism]; Region: CyaA; COG3072
198214011228	Adenylate cyclase NT domain; Region: Adenyl_cycl_N; pfam12633
198214011229	Adenylate cyclase, class-I; Region: Adenylate_cycl; pfam01295
198214011230	Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate...; Region: Frataxin; cd00503
198214011231	putative iron binding site [ion binding]; other site
198214011232	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790240 (162 aa). BLAST with identity of 97% in 1275 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214011233	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214011234	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214011235	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214011236	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214011237	Predicted small periplasmic lipoprotein [Cell motility and secretion]; Region: COG5567
198214011238	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
198214011239	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
198214011240	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
198214011241	hypothetical protein; Provisional; Region: PRK10963
198214011242	Site-specific recombinase XerC [DNA replication, recombination, and repair]; Region: XerC; COG4973
198214011243	XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination...; Region: INT_XerDC; cd00798
198214011244	active site
198214011245	Int/Topo IB signature motif; other site
198214011246	flavin mononucleotide phosphatase; Provisional; Region: PRK10748
198214011247	Predicted hydrolase (HAD superfamily) [General function prediction only]; Region: COG1011
198214011248	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214011249	motif II; other site
198214011250	DNA-dependent helicase II; Provisional; Region: uvrD; PRK11773
198214011251	Part of AAA domain; Region: AAA_19; pfam13245
198214011252	UvrD-like helicase C-terminal domain; Region: UvrD_C_2; pfam13538
198214011253	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790248 (162 aa). BLAST with identity of 99% in 641 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214011254	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214011255	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214011256	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214011257	CorA-like Mg2+ transporter protein; Region: CorA; pfam01544
198214011258	Escherichia coli Mg2+ transporter CorA_like subgroup; Region: EcCorA-like_1; cd12835
198214011259	Cl binding site [ion binding]; other site
198214011260	oligomer interface [polypeptide binding]; other site
198214011261	Protein of unknown function (DUF2628); Region: DUF2628; pfam10947
198214011262	hypothetical protein; Provisional; Region: PRK11371
198214011263	putative chloramphenical resistance permease RarD; Provisional; Region: PRK15430
198214011264	Multidrug resistance efflux transporter; Region: EmrE; cl19304
198214011265	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
198214011266	Thioesterase-like superfamily; Region: 4HBT_3; pfam13622
198214011267	CoenzymeA binding site [chemical binding]; other site
198214011268	subunit interaction site [polypeptide binding]; other site
198214011269	PHB binding site; other site
198214011270	The outer membrane phospholipase A (OMPLA) is an integral membrane enzyme that catalyses the hydrolysis of acylester bonds in phospholipids using calcium as a cofactor. The enzyme has a fold of transmembrane beta-barrels and is widespread among...; Region: OMPLA; cd00541
198214011271	dimerization interface [polypeptide binding]; other site
198214011272	substrate binding site [chemical binding]; other site
198214011273	active site
198214011274	calcium binding site [ion binding]; other site
198214011275	ATP-dependent DNA helicase RecQ; Provisional; Region: PRK11057
198214011276	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214011277	ATP binding site [chemical binding]; other site
198214011278	putative Mg++ binding site [ion binding]; other site
198214011279	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
198214011280	nucleotide binding region [chemical binding]; other site
198214011281	ATP-binding site [chemical binding]; other site
198214011282	This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure; Region: RQC; smart00956
198214011283	Helicase and RNase D C-terminal; Region: HRDC; smart00341
198214011284	threonine efflux system; Provisional; Region: PRK10229
198214011285	homoserine/homoserine lactone efflux protein; Provisional; Region: rhtB; PRK10520
198214011286	lysophospholipase L2; Provisional; Region: PRK10749
198214011287	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
198214011288	putative hydrolase; Provisional; Region: PRK10976
198214011289	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214011290	active site
198214011291	motif I; other site
198214011292	motif II; other site
198214011293	haloacid dehalogenase-like hydrolase; Region: HAD; cl19137
198214011294	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
198214011295	EamA-like transporter family; Region: EamA; pfam00892
198214011296	DNA-binding transcriptional regulator MetR; Provisional; Region: PRK15421
198214011297	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214011298	The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold; Region: PBP2_MetR; cd08441
198214011299	putative dimerization interface [polypeptide binding]; other site
198214011300	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222
198214011301	CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_N_terminal_like; cd03312
198214011302	THF binding site; other site
198214011303	CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_C_terminal_like; cd03311
198214011304	substrate binding site [chemical binding]; other site
198214011305	THF binding site; other site
198214011306	zinc-binding site [ion binding]; other site
198214011307	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
198214011308	BAAT / Acyl-CoA thioester hydrolase C terminal; Region: BAAT_C; pfam08840
198214011309	uridine phosphorylase; Provisional; Region: PRK11178
198214011310	DNA recombination protein RmuC; Provisional; Region: PRK10361
198214011311	RmuC family; Region: RmuC; pfam02646
198214011312	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
198214011313	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214011314	S-adenosylmethionine binding site [chemical binding]; other site
198214011315	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3165
198214011316	putative ubiquinone biosynthesis protein UbiB; Reviewed; Region: ubiB; PRK04750
198214011317	2-polyprenylphenol 6-hydroxylase; Region: UbiB; TIGR01982
198214011318	twin arginine translocase protein A; Provisional; Region: tatA; PRK03554
198214011319	sec-independent translocase; Provisional; Region: PRK01770
198214011320	sec-independent translocase; Provisional; Region: tatB; PRK00404
198214011321	twin-arginine protein translocation system subunit TatC; Provisional; Region: PRK10921
198214011322	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
198214011323	active site
198214011324	transcriptional activator RfaH; Provisional; Region: rfaH; PRK09014
198214011325	N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), RfaH; Region: NGN_SP_RfaH; cd09892
198214011326	KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); Region: KOW; cl00354
198214011327	3-octaprenyl-4-hydroxybenzoate decarboxylase; Provisional; Region: PRK10922
198214011328	FMN reductase; Validated; Region: fre; PRK08051
198214011329	NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN; Region: flavin_oxioreductase; cd06189
198214011330	FAD binding pocket [chemical binding]; other site
198214011331	FAD binding motif [chemical binding]; other site
198214011332	phosphate binding motif [ion binding]; other site
198214011333	beta-alpha-beta structure motif; other site
198214011334	NAD binding pocket [chemical binding]; other site
198214011335	3-ketoacyl-CoA thiolase; Reviewed; Region: fadA; PRK08947
198214011336	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
198214011337	dimer interface [polypeptide binding]; other site
198214011338	active site
198214011339	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadB; PRK11730
198214011340	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
198214011341	substrate binding site [chemical binding]; other site
198214011342	oxyanion hole (OAH) forming residues; other site
198214011343	trimer interface [polypeptide binding]; other site
198214011344	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
198214011345	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
198214011346	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
198214011347	proline dipeptidase; Provisional; Region: PRK13607
198214011348	Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on...; Region: Prolidase; cd01087
198214011349	active site
198214011350	hypothetical protein; Provisional; Region: PRK11568
198214011351	Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205
198214011352	Domain of unknown function (DUF1949); Region: DUF1949; pfam09186
198214011353	potassium transporter; Provisional; Region: PRK10750
198214011354	Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: TrkG; COG0168
198214011355	protoporphyrinogen oxidase; Provisional; Region: hemG; PRK11104
198214011356	Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa; Region: MobB; cd03116
198214011357	Walker A motif; other site
198214011358	MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503
198214011359	GTP binding site; other site
198214011360	Protein of unknown function (DUF1040); Region: DUF1040; pfam06288
198214011361	serine/threonine protein kinase; Provisional; Region: PRK11768
198214011362	Phosphotransferase enzyme family; Region: APH; pfam01636
198214011363	DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol...; Region: DsbA_DsbA; cd03019
198214011364	catalytic residues [active]
198214011365	hinge region; other site
198214011366	alpha helical domain; other site
198214011367	hypothetical protein; Provisional; Region: PRK11367
198214011368	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; Region: LPLAT_LCLAT1-like; cd07990
198214011369	putative acyl-acceptor binding pocket; other site
198214011370	DNA polymerase I; Provisional; Region: PRK05755
198214011371	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
198214011372	active site
198214011373	metal binding site 1 [ion binding]; metal-binding site
198214011374	putative 5' ssDNA interaction site; other site
198214011375	metal binding site 3; metal-binding site
198214011376	metal binding site 2 [ion binding]; metal-binding site
198214011377	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
198214011378	putative DNA binding site [nucleotide binding]; other site
198214011379	putative metal binding site [ion binding]; other site
198214011380	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139
198214011381	active site
198214011382	catalytic site [active]
198214011383	substrate binding site [chemical binding]; other site
198214011384	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
198214011385	active site
198214011386	DNA binding site [nucleotide binding]
198214011387	catalytic site [active]
198214011388	Predicted GTPase [General function prediction only]; Region: COG0218
198214011389	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
198214011390	G1 box; other site
198214011391	GTP/Mg2+ binding site [chemical binding]; other site
198214011392	Switch I region; other site
198214011393	G2 box; other site
198214011394	G3 box; other site
198214011395	Switch II region; other site
198214011396	G4 box; other site
198214011397	G5 box; other site
198214011398	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3078
198214011399	coproporphyrinogen III oxidase; Provisional; Region: PRK09249
198214011400	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214011401	FeS/SAM binding site; other site
198214011402	HemN C-terminal domain; Region: HemN_C; pfam06969
198214011403	nitrogen regulation protein NR(I); Provisional; Region: glnG; PRK10923
198214011404	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214011405	active site
198214011406	phosphorylation site [posttranslational modification]
198214011407	intermolecular recognition site; other site
198214011408	dimerization interface [polypeptide binding]; other site
198214011409	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214011410	Walker A motif; other site
198214011411	ATP binding site [chemical binding]; other site
198214011412	Walker B motif; other site
198214011413	arginine finger; other site
198214011414	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
198214011415	nitrogen regulation protein NR(II); Provisional; Region: glnL; PRK11073
198214011416	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
198214011417	putative active site [active]
198214011418	heme pocket [chemical binding]; other site
198214011419	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214011420	dimer interface [polypeptide binding]; other site
198214011421	phosphorylation site [posttranslational modification]
198214011422	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214011423	ATP binding site [chemical binding]; other site
198214011424	Mg2+ binding site [ion binding]; other site
198214011425	G-X-G motif; other site
198214011426	glutamine synthetase; Provisional; Region: glnA; PRK09469
198214011427	Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951
198214011428	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
198214011429	Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217
198214011430	Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; Region: TypA_BipA; cd01891
198214011431	G1 box; other site
198214011432	putative GEF interaction site [polypeptide binding]; other site
198214011433	GTP/Mg2+ binding site [chemical binding]; other site
198214011434	Switch I region; other site
198214011435	G2 box; other site
198214011436	G3 box; other site
198214011437	Switch II region; other site
198214011438	G4 box; other site
198214011439	G5 box; other site
198214011440	BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu.  BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691
198214011441	BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants.  BipA is a highly...; Region: BipA_TypA_C; cd03710
198214011442	transcriptional regulator protein; Region: phnR; TIGR03337
198214011443	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214011444	DNA-binding site [nucleotide binding]; DNA binding site
198214011445	UTRA domain; Region: UTRA; pfam07702
198214011446	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
198214011447	Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261
198214011448	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214011449	putative substrate translocation pore; other site
198214011450	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214011451	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214011452	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214011453	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214011454	Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; cl11629
198214011455	sugar (Glycoside-Pentoside-Hexuronide) transporter; Region: gph; TIGR00792
198214011456	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214011457	putative substrate translocation pore; other site
198214011458	alpha-glucosidase; Provisional; Region: PRK10426
198214011459	Galactose mutarotase-like; Region: Gal_mutarotas_2; pfam13802
198214011460	YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs...; Region: GH31_glucosidase_YihQ; cd06594
198214011461	putative active site [active]
198214011462	putative catalytic site [active]
198214011463	Aldose 1-epimerase, similar to Escherichia coli YihR; Region: Aldose_epim_Ec_YihR; cd09022
198214011464	active site
198214011465	catalytic residues [active]
198214011466	AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is...; Region: AGE; cd00249
198214011467	dimerization interface [polypeptide binding]; other site
198214011468	putative active cleft [active]
198214011469	Class I aldolases; Region: Aldolase_Class_I; cl17187
198214011470	catalytic residue [active]
198214011471	NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional; Region: PRK15461
198214011472	NAD binding domain of 6-phosphogluconate dehydrogenase; Region: NAD_binding_2; pfam03446
198214011473	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; Region: NAD_binding_11; pfam14833
198214011474	Ribokinase-like subgroup B.  Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily.  Its oligomerization state is unknown at this time; Region: ribokinase_group_B; cd01945
198214011475	substrate binding site [chemical binding]; other site
198214011476	ATP binding site [chemical binding]; other site
198214011477	Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]; Region: GlpR; COG1349
198214011478	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214011479	putative DNA binding site [nucleotide binding]; other site
198214011480	putative Zn2+ binding site [ion binding]; other site
198214011481	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214011482	haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Region: HAD-SF-IA-v3; TIGR01509
198214011483	haloacid dehalogenase-like hydrolase; Region: HAD; pfam12710
198214011484	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214011485	motif II; other site
198214011486	hypothetical protein; Reviewed; Region: PRK01637
198214011487	D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not...; Region: Dtyr_deacylase; cd00563
198214011488	putative active site [active]
198214011489	dimerization interface [polypeptide binding]; other site
198214011490	putative tRNAtyr binding site [nucleotide binding]; other site
198214011491	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214011492	Coenzyme A binding pocket [chemical binding]; other site
198214011493	Putative thioesterase (yiiD_Cterm); Region: YiiD_Cterm; pfam09500
198214011494	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214011495	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214011496	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214011497	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214011498	Ribbon-helix-helix protein, copG family; Region: RHH_1; pfam01402
198214011499	formate dehydrogenase accessory protein FdhE; Provisional; Region: PRK03564
198214011500	formate dehydrogenase-O subunit gamma; Provisional; Region: PRK10639
198214011501	formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582
198214011502	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214011503	Formate dehydrogenase N, transmembrane; Region: Form-deh_trans; pfam09163
198214011504	formate dehydrogenase, alpha subunit, proteobacterial-type; Region: formate-DH-alph; TIGR01553
198214011505	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752
198214011506	[4Fe-4S] binding site [ion binding]; other site
198214011507	molybdopterin cofactor binding site; other site
198214011508	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_CT_Formate-Dh-Na-like; cd02792
198214011509	molybdopterin cofactor binding site; other site
198214011510	formate dehydrogenase accessory protein; Reviewed; Region: PRK00724
198214011511	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214011512	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214011513	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214011514	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214011515	Similar to Escherichia coli K12  frv operon regulatory protein gi: 1790331 (583 aa). BLAST with identity of 99% in 209 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214011516	M42 Peptidase, Endoglucanases; Region: M42_Frv; cd05656
198214011517	oligomer interface [polypeptide binding]; other site
198214011518	active site
198214011519	metal binding site [ion binding]; metal-binding site
198214011520	putative PTS system  transporter subunits IIBC; Provisional; Region: PRK11404
198214011521	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
198214011522	active site
198214011523	P-loop; other site
198214011524	phosphorylation site [posttranslational modification]
198214011525	Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]; Region: FruA; COG1299
198214011526	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214011527	active site
198214011528	phosphorylation site [posttranslational modification]
198214011529	L-rhamnose 1-epimerase; Region: YiiL_rotase; TIGR02625
198214011530	L-rhamnose isomerase; Provisional; Region: PRK01076
198214011531	L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases; Region: FGGY_RhuK; cd07771
198214011532	N- and C-terminal domain interface [polypeptide binding]; other site
198214011533	active site
198214011534	putative catalytic site [active]
198214011535	metal binding site [ion binding]; metal-binding site
198214011536	ATP binding site [chemical binding]; other site
198214011537	rhamnulokinase; Provisional; Region: rhaB; PRK10640
198214011538	carbohydrate binding site [chemical binding]; other site
198214011539	transcriptional activator RhaS; Provisional; Region: PRK13503
198214011540	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
198214011541	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011542	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011543	transcriptional activator RhaR; Provisional; Region: PRK13500
198214011544	AraC-like ligand binding domain; Region: AraC_binding; pfam02311
198214011545	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011546	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011547	superoxide dismutase; Provisional; Region: PRK10925
198214011548	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
198214011549	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
198214011550	2-keto-3-deoxygluconate permease; Region: KdgT; cl14653
198214011551	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214011552	HTH-like domain; Region: HTH_21; pfam13276
198214011553	Integrase core domain; Region: rve; pfam00665
198214011554	Integrase core domain; Region: rve_3; pfam13683
198214011555	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214011556	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214011557	6-N-hydroxylaminopurine resistance protein; Provisional; Region: PRK11536
198214011558	MOSC domain; Region: MOSC; pfam03473
198214011559	3-alpha domain; Region: 3-alpha; pfam03475
198214011560	two-component sensor protein; Provisional; Region: cpxA; PRK09470
198214011561	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214011562	dimerization interface [polypeptide binding]; other site
198214011563	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214011564	dimer interface [polypeptide binding]; other site
198214011565	phosphorylation site [posttranslational modification]
198214011566	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214011567	ATP binding site [chemical binding]; other site
198214011568	Mg2+ binding site [ion binding]; other site
198214011569	G-X-G motif; other site
198214011570	DNA-binding transcriptional regulator CpxR; Provisional; Region: PRK10955
198214011571	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214011572	active site
198214011573	intermolecular recognition site; other site
198214011574	dimerization interface [polypeptide binding]; other site
198214011575	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214011576	DNA binding site [nucleotide binding]
198214011577	CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cd09916
198214011578	dimer interface [polypeptide binding]; other site
198214011579	ferrous iron efflux protein F; Reviewed; Region: fieF; PRK09509
198214011580	Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent...; Region: Bacterial_PFK; cd00763
198214011581	active site
198214011582	ADP/pyrophosphate binding site [chemical binding]; other site
198214011583	dimerization interface [polypeptide binding]; other site
198214011584	allosteric effector site; other site
198214011585	fructose-1,6-bisphosphate binding site; other site
198214011586	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214011587	substrate binding pocket [chemical binding]; other site
198214011588	membrane-bound complex binding site; other site
198214011589	hinge residues; other site
198214011590	CDP-diacylglycerol pyrophosphatase, bacterial type; Region: cdh; TIGR00672
198214011591	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
198214011592	substrate binding site [chemical binding]; other site
198214011593	dimer interface [polypeptide binding]; other site
198214011594	catalytic triad [active]
198214011595	Protein of unknown function (DUF1454); Region: DUF1454; pfam07305
198214011596	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790355 (147 aa). BLAST with identity of 99% in 147 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214011597	hypothetical protein; Provisional; Region: PRK09981
198214011598	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
198214011599	Ligand Binding Site [chemical binding]; other site
198214011600	ferredoxin-NADP reductase; Provisional; Region: PRK10926
198214011601	Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195
198214011602	FAD binding pocket [chemical binding]; other site
198214011603	FAD binding motif [chemical binding]; other site
198214011604	phosphate binding motif [ion binding]; other site
198214011605	beta-alpha-beta structure motif; other site
198214011606	NAD binding pocket [chemical binding]; other site
198214011607	Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core...; Region: FBPase_glpX; cd01516
198214011608	putative active site [active]
198214011609	glycerol kinase; Region: glycerol_kin; TIGR01311
198214011610	Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_EcGK_like; cd07786
198214011611	homotetramer interface [polypeptide binding]; other site
198214011612	N- and C-terminal domain interface [polypeptide binding]; other site
198214011613	active site
198214011614	glycerol binding site [chemical binding]; other site
198214011615	homodimer interface [polypeptide binding]; other site
198214011616	FBP binding site [chemical binding]; other site
198214011617	MgATP binding site [chemical binding]; other site
198214011618	protein IIAGlc interface [polypeptide binding]; other site
198214011619	septal ring assembly protein ZapB; Provisional; Region: PRK15422
198214011620	ribonuclease activity regulator protein RraA; Provisional; Region: PRK09372
198214011621	1,4-Dihydroxy-2-naphthoate octaprenyltransferase; Region: PT_UbiA_UBIAD1; cd13962
198214011622	putative active site [active]
198214011623	ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201
198214011624	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214011625	Walker A motif; other site
198214011626	ATP binding site [chemical binding]; other site
198214011627	AAA domain (Cdc48 subfamily); Region: AAA_2; pfam07724
198214011628	Walker B motif; other site
198214011629	arginine finger; other site
198214011630	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
198214011631	Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913
198214011632	active site
198214011633	HslU subunit interaction site [polypeptide binding]; other site
198214011634	essential cell division protein FtsN; Provisional; Region: PRK10927
198214011635	Sporulation related domain; Region: SPOR; pfam05036
198214011636	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214011637	DNA binding site [nucleotide binding]
198214011638	DNA-binding transcriptional regulator CytR; Provisional; Region: PRK11041
198214011639	domain linker motif; other site
198214011640	Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria; Region: PBP1_LacI_like_6; cd06284
198214011641	dimerization interface [polypeptide binding]; other site
198214011642	ligand binding site [chemical binding]; other site
198214011643	primosome assembly protein PriA; Validated; Region: PRK05580
198214011644	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214011645	ATP binding site [chemical binding]; other site
198214011646	putative Mg++ binding site [ion binding]; other site
198214011647	helicase superfamily c-terminal domain; Region: HELICc; smart00490
198214011648	50S ribosomal protein L31; Reviewed; Region: rpmE; PRK00019
198214011649	hypothetical protein; Provisional; Region: PRK10030
198214011650	Met Repressor, MetJ.  MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox'...; Region: Met_repressor_MetJ; cd00490
198214011651	dimerization interface [polypeptide binding]; other site
198214011652	DNA binding site [nucleotide binding]
198214011653	corepressor binding sites; other site
198214011654	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
198214011655	homodimer interface [polypeptide binding]; other site
198214011656	substrate-cofactor binding pocket; other site
198214011657	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214011658	catalytic residue [active]
198214011659	bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional; Region: metL; PRK09466
198214011660	AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli...; Region: AAK_AK-HSDH; cd04257
198214011661	putative catalytic residues [active]
198214011662	putative nucleotide binding site [chemical binding]; other site
198214011663	putative aspartate binding site [chemical binding]; other site
198214011664	ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase); Region: ACT_AK-like_2; cd04892
198214011665	Homoserine dehydrogenase, NAD binding domain; Region: NAD_binding_3; pfam03447
198214011666	Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742
198214011667	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
198214011668	FAD binding site [chemical binding]; other site
198214011669	catalase/hydroperoxidase HPI(I); Provisional; Region: PRK15061
198214011670	Heme-dependent peroxidases similar to plant peroxidases; Region: plant_peroxidase_like; cl00196
198214011671	heme binding site [chemical binding]; other site
198214011672	C-terminal non-catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_2; cd08200
198214011673	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
198214011674	EamA-like transporter family; Region: EamA; pfam00892
198214011675	EamA-like transporter family; Region: EamA; pfam00892
198214011676	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790380 (206 aa). BLAST with identity of 95% in 202 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214011677	'Similar to Escherichia coli K12 glycerol dehydrogenase, (NAD) gi: 1790381 (381 aa). BLAST with identity of 97% in 380 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'
198214011678	Similar to Escherichia coli K12 PEP-protein phosphotransferase system enzyme I gi: 1790383 (712 aa). BLAST with identity of 97% in 711 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214011679	putative PTS system fructose-like transporter subunit EIIC; Provisional; Region: PRK10478
198214011680	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
198214011681	active site
198214011682	P-loop; other site
198214011683	phosphorylation site [posttranslational modification]
198214011684	putative formate acetyltransferase 2; Provisional; Region: pflD; PRK09983
198214011685	Pyruvate formate lyase 2 and related enzymes; Region: PFL2_DhaB_BssA; cd01677
198214011686	dimer interface [polypeptide binding]; other site
198214011687	active site
198214011688	glycine loop; other site
198214011689	glycyl-radical enzyme activating protein family; Region: PFLE_PFLC; TIGR02494
198214011690	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214011691	FeS/SAM binding site; other site
198214011692	PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and...; Region: PTS_IIB_fructose; cd05569
198214011693	active site
198214011694	P-loop; other site
198214011695	phosphorylation site [posttranslational modification]
198214011696	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011697	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
198214011698	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011699	hypothetical protein; Provisional; Region: PRK10649
198214011700	Domain of unknown function (DUF1705); Region: DUF1705; pfam08019
198214011701	Sulfatase; Region: Sulfatase; pfam00884
198214011702	phosphoenolpyruvate carboxylase; Reviewed; Region: PRK00009
198214011703	acetylornithine deacetylase (ArgE); Region: AcOrn-deacetyl; TIGR01892
198214011704	M20 Peptidase acetylornithine deacetylase; Region: M20_ArgE; cd03894
198214011705	metal binding site [ion binding]; metal-binding site
198214011706	putative dimer interface [polypeptide binding]; other site
198214011707	N-acetyl-gamma-glutamyl-phosphate reductase, common form; Region: argC; TIGR01850
198214011708	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; pfam01118
198214011709	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; cl19935
198214011710	AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of...; Region: AAK_NAGK-NC; cd04249
198214011711	nucleotide binding site [chemical binding]; other site
198214011712	N-acetyl-L-glutamate binding site [chemical binding]; other site
198214011713	argininosuccinate lyase; Provisional; Region: PRK04833
198214011714	Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359
198214011715	active sites [active]
198214011716	tetramer interface [polypeptide binding]; other site
198214011717	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214011718	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214011719	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214011720	bifunctional D-altronate/D-mannonate dehydratase; Provisional; Region: PRK15072
198214011721	The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of...; Region: rpsA; cd03322
198214011722	putative active site pocket [active]
198214011723	putative metal binding site [ion binding]; other site
198214011724	Similar to Escherichia coli O157:H7  transport protein  ref: NP_313343.1 (453 aa). BLAST with identity of 59% in 687 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214011725	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214011726	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214011727	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214011728	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214011729	DNA-binding transcriptional regulator OxyR; Provisional; Region: PRK11151
198214011730	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214011731	The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_OxyR; cd08411
198214011732	dimerization interface [polypeptide binding]; other site
198214011733	soluble pyridine nucleotide transhydrogenase; Provisional; Region: PRK05249
198214011734	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
198214011735	Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; Region: Pyr_redox_dim; pfam02852
198214011736	DNA-binding transcriptional repressor FabR; Provisional; Region: PRK11202
198214011737	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214011738	hypothetical protein; Provisional; Region: PRK11056
198214011739	tRNA (uracil-5-)-methyltransferase; Validated; Region: PRK05031
198214011740	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214011741	S-adenosylmethionine binding site [chemical binding]; other site
198214011742	vitamin B12/cobalamin outer membrane transporter; Provisional; Region: btuB; PRK10641
198214011743	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
198214011744	N-terminal plug; other site
198214011745	ligand-binding site [chemical binding]; other site
198214011746	glutamate racemase; Provisional; Region: PRK00865
198214011747	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK00046
198214011748	FAD binding domain; Region: FAD_binding_4; pfam01565
198214011749	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
198214011750	Biotin operon repressor [Transcription]; Region: BirA; COG1654
198214011751	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional; Region: PRK11886
198214011752	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; pfam03099
198214011753	Biotin protein ligase C terminal domain; Region: BPL_C; pfam02237
198214011754	Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point...; Region: PanK; cd02025
198214011755	ATP-binding site [chemical binding]; other site
198214011756	CoA-binding site [chemical binding]; other site
198214011757	Mg2+-binding site [ion binding]; other site
198214011758	elongation factor Tu; Reviewed; Region: PRK00049
198214011759	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
198214011760	G1 box; other site
198214011761	GEF interaction site [polypeptide binding]; other site
198214011762	GTP/Mg2+ binding site [chemical binding]; other site
198214011763	Switch I region; other site
198214011764	G2 box; other site
198214011765	G3 box; other site
198214011766	Switch II region; other site
198214011767	G4 box; other site
198214011768	G5 box; other site
198214011769	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
198214011770	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
198214011771	Antibiotic Binding Site [chemical binding]; other site
198214011772	preprotein translocase subunit SecE; Reviewed; Region: secE; PRK05740
198214011773	transcription antitermination protein NusG; Validated; Region: nusG; PRK05609
198214011774	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
198214011775	putative homodimer interface [polypeptide binding]; other site
198214011776	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
198214011777	heterodimer interface [polypeptide binding]; other site
198214011778	homodimer interface [polypeptide binding]; other site
198214011779	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
198214011780	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
198214011781	23S rRNA interface [nucleotide binding]; other site
198214011782	L7/L12 interface [polypeptide binding]; other site
198214011783	putative thiostrepton binding site; other site
198214011784	L25 interface [polypeptide binding]; other site
198214011785	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
198214011786	mRNA/rRNA interface [nucleotide binding]; other site
198214011787	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
198214011788	23S rRNA interface [nucleotide binding]; other site
198214011789	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
198214011790	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
198214011791	core dimer interface [polypeptide binding]; other site
198214011792	peripheral dimer interface [polypeptide binding]; other site
198214011793	L10 interface [polypeptide binding]; other site
198214011794	L11 interface [polypeptide binding]; other site
198214011795	putative EF-Tu interaction site [polypeptide binding]; other site
198214011796	putative EF-G interaction site [polypeptide binding]; other site
198214011797	DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405
198214011798	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
198214011799	RPB12 interaction site [polypeptide binding]; other site
198214011800	RPB1 interaction site [polypeptide binding]; other site
198214011801	RNA polymerase beta subunit external 1 domain; Region: RNA_pol_Rpb2_45; pfam10385
198214011802	RPB10 interaction site [polypeptide binding]; other site
198214011803	RPB11 interaction site [polypeptide binding]; other site
198214011804	RPB3 interaction site [polypeptide binding]; other site
198214011805	Largest subunit (beta') of bacterial DNA-dependent RNA polymerase (RNAP), N-terminal domain; Region: RNAP_beta'_N; cd01609
198214011806	beta and beta' interface [polypeptide binding]; other site
198214011807	DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566
198214011808	beta' and sigma factor interface [polypeptide binding]; other site
198214011809	Zn-binding [ion binding]; other site
198214011810	active site region [active]
198214011811	catalytic site [active]
198214011812	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
198214011813	Rpb1 (beta') - Rpb6 (omega) interaction site [polypeptide binding]; other site
198214011814	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
198214011815	G-loop; other site
198214011816	DNA binding site [nucleotide binding]
198214011817	thiamine biosynthesis protein ThiH; Reviewed; Region: thiH; PRK09240
198214011818	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214011819	FeS/SAM binding site; other site
198214011820	Biotin and Thiamin Synthesis associated domain; Region: BATS; pfam06968
198214011821	Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728
198214011822	ThiS interaction site; other site
198214011823	putative active site [active]
198214011824	tetramer interface [polypeptide binding]; other site
198214011825	ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD...; Region: ThiF_MoeB_HesA_family; cd00757
198214011826	thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily; Region: adenyl_thiF; TIGR02356
198214011827	ATP binding site [chemical binding]; other site
198214011828	substrate interface [chemical binding]; other site
198214011829	Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-; Region: TMP_TenI; cd00564
198214011830	thiamine phosphate binding site [chemical binding]; other site
198214011831	active site
198214011832	pyrophosphate binding site [ion binding]; other site
198214011833	thiamine biosynthesis protein ThiC; Provisional; Region: PRK09284
198214011834	ThiC-associated domain; Region: ThiC-associated; pfam13667
198214011835	ThiC family; Region: ThiC; pfam01964
198214011836	Regulator of sigma D [Transcription]; Region: Rsd; COG3160
198214011837	NADH pyrophosphatase; Reviewed; Region: nudC; PRK00241
198214011838	NADH pyrophosphatase-like rudimentary NUDIX domain; Region: NUDIX-like; pfam09296
198214011839	NADH pyrophosphatase zinc ribbon domain; Region: zf-NADH-PPase; pfam09297
198214011840	NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for...; Region: NADH_pyrophosphatase; cd03429
198214011841	putative NADH binding site [chemical binding]; other site
198214011842	putative active site [active]
198214011843	nudix motif; other site
198214011844	putative metal binding site [ion binding]; other site
198214011845	Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717
198214011846	substrate binding site [chemical binding]; other site
198214011847	active site
198214011848	Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases; Region: Endonuclease_V; cd06559
198214011849	Active_site [active]
198214011850	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3068
198214011851	histone-like DNA-binding protein HU; Region: HU; cd13831
198214011852	dimer interface [polypeptide binding]; other site
198214011853	DNA binding site [nucleotide binding]
198214011854	Protein of unknown function (DUF1481); Region: DUF1481; pfam07356
198214011855	zinc resistance protein; Provisional; Region: zraP; PRK11546
198214011856	dimer interface [polypeptide binding]; other site
198214011857	sensor protein ZraS; Provisional; Region: PRK10364
198214011858	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214011859	dimer interface [polypeptide binding]; other site
198214011860	phosphorylation site [posttranslational modification]
198214011861	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214011862	ATP binding site [chemical binding]; other site
198214011863	Mg2+ binding site [ion binding]; other site
198214011864	G-X-G motif; other site
198214011865	transcriptional regulatory protein ZraR; Provisional; Region: PRK10365
198214011866	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214011867	active site
198214011868	phosphorylation site [posttranslational modification]
198214011869	intermolecular recognition site; other site
198214011870	dimerization interface [polypeptide binding]; other site
198214011871	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214011872	Walker A motif; other site
198214011873	ATP binding site [chemical binding]; other site
198214011874	Walker B motif; other site
198214011875	arginine finger; other site
198214011876	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
198214011877	phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885
198214011878	Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844
198214011879	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Region: GARS_A; pfam01071
198214011880	Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843
198214011881	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881
198214011882	Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates...; Region: IMPCH; cd01421
198214011883	purine monophosphate binding site [chemical binding]; other site
198214011884	dimer interface [polypeptide binding]; other site
198214011885	putative catalytic residues [active]
198214011886	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; smart00798
198214011887	Similar to Escherichia coli K12 homoserine transsuccinylase gi: 1790443 (310 aa). BLAST with identity of 98% in 212 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214011888	Similar to Escherichia coli K12 malate synthase A gi: 1790444 (534 aa). BLAST with identity of 98% in 534 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214011889	Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate...; Region: ICL_PEPM; cd00377
198214011890	tetramer interface [polypeptide binding]; other site
198214011891	active site
198214011892	Mg2+/Mn2+ binding site [ion binding]; other site
198214011893	Similar to Escherichia coli K12 isocitrate dehydrogenase kinase/phosphatase gi: 1790446 (579 aa). BLAST with identity of 98% in 579 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214011894	Similar to Escherichia coli K12 regulator of acetyl CoA synthetase gi: 1790447 (729 aa). BLAST with identity of 98% in 728 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214011895	transcriptional repressor IclR; Provisional; Region: PRK11569
198214011896	helix_turn_helix isocitrate lyase regulation; Region: HTH_ICLR; smart00346
198214011897	Bacterial transcriptional regulator; Region: IclR; pfam01614
198214011898	B12-dependent methionine synthase; Provisional; Region: metH; PRK09490
198214011899	Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Region: MetH; COG0646
198214011900	MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  Cobalamin-dependent...; Region: MeTr; cd00740
198214011901	substrate binding pocket [chemical binding]; other site
198214011902	B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069
198214011903	B12 binding site [chemical binding]; other site
198214011904	cobalt ligand [ion binding]; other site
198214011905	Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965
198214011906	Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283
198214011907	Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690
198214011908	Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690
198214011909	Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E; Region: GAT1_Peptidase_E; cd03146
198214011910	active site pocket [active]
198214011911	oxyanion hole [active]
198214011912	catalytic triad [active]
198214011913	active site nucleophile [active]
198214011914	Protein of unknown function (DUF3521); Region: DUF3521; pfam12035
198214011915	L-sorbose-1-phosphate reductase; Region: sorbose_phosphate_red; cd08238
198214011916	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
198214011917	putative NAD(P) binding site [chemical binding]; other site
198214011918	catalytic Zn binding site [ion binding]; other site
198214011919	PTS system mannose/fructose/sorbose family IID component; Region: EIID-AGA; cl01507
198214011920	PTS system mannose-specific transporter subunit IIC; Provisional; Region: PRK15065
198214011921	PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001
198214011922	active site
198214011923	phosphorylation site [posttranslational modification]
198214011924	PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006
198214011925	active pocket/dimerization site; other site
198214011926	active site
198214011927	phosphorylation site [posttranslational modification]
198214011928	sorbitol-6-phosphate 2-dehydrogenase; Provisional; Region: PRK06171
198214011929	classical (c) SDRs; Region: SDR_c; cd05233
198214011930	NAD(P) binding site [chemical binding]; other site
198214011931	active site
198214011932	Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; Region: DeoR; COG2390
198214011933	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
198214011934	putative DNA binding site [nucleotide binding]; other site
198214011935	putative Zn2+ binding site [ion binding]; other site
198214011936	Putative sugar-binding domain; Region: Sugar-bind; pfam04198
198214011937	23S rRNA pseudouridine synthase F; Provisional; Region: PRK10475
198214011938	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
198214011939	RNA binding surface [nucleotide binding]; other site
198214011940	Pseudouridine synthase, Escherichia coli RluF like; Region: PseudoU_synth_RluF; cd02554
198214011941	probable active site [active]
198214011942	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214011943	HTH-like domain; Region: HTH_21; pfam13276
198214011944	Integrase core domain; Region: rve; pfam00665
198214011945	Integrase core domain; Region: rve_3; pfam13683
198214011946	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214011947	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214011948	sensory histidine kinase DcuS; Provisional; Region: PRK11086
198214011949	Sensory domain of two-component sensor kinase; Region: Cache_3; pfam14827
198214011950	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
198214011951	putative active site [active]
198214011952	heme pocket [chemical binding]; other site
198214011953	Sensor_kinase_SpoOB-type, alpha-helical domain; Region: SPOB_a; pfam14689
198214011954	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214011955	ATP binding site [chemical binding]; other site
198214011956	Mg2+ binding site [ion binding]; other site
198214011957	G-X-G motif; other site
198214011958	DNA-binding transcriptional activator DcuR; Provisional; Region: PRK10430
198214011959	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214011960	active site
198214011961	phosphorylation site [posttranslational modification]
198214011962	intermolecular recognition site; other site
198214011963	dimerization interface [polypeptide binding]; other site
198214011964	anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK12489
198214011965	fumarate hydratase FumB; Provisional; Region: PRK15391
198214011966	Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]; Region: TtdA; COG1951
198214011967	Fumarase C-terminus; Region: Fumerase_C; pfam05683
198214011968	hypothetical protein; Provisional; Region: PRK09867
198214011969	melibiose:sodium symporter; Provisional; Region: PRK10429
198214011970	sugar (Glycoside-Pentoside-Hexuronide) transporter; Region: gph; TIGR00792
198214011971	alpha-galactosidase; Provisional; Region: PRK15076
198214011972	Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases; Region: GH4_alpha_glucosidase_galactosidase; cd05297
198214011973	NAD binding site [chemical binding]; other site
198214011974	sugar binding site [chemical binding]; other site
198214011975	divalent metal binding site [ion binding]; other site
198214011976	putative tetramer (dimer of dimers) interface [polypeptide binding]; other site
198214011977	dimer interface [polypeptide binding]; other site
198214011978	DNA-binding transcriptional regulator MelR; Provisional; Region: PRK10371
198214011979	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011980	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011981	arginine decarboxylase; Provisional; Region: PRK15029
198214011982	Orn/Lys/Arg decarboxylase, N-terminal domain; Region: OKR_DC_1_N; pfam03709
198214011983	Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine...; Region: Orn_deC_like; cd00615
198214011984	homodimer interface [polypeptide binding]; other site
198214011985	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214011986	catalytic residue [active]
198214011987	Orn/Lys/Arg decarboxylase, C-terminal domain; Region: OKR_DC_1_C; pfam03711
198214011988	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011989	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
198214011990	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214011991	arginine:agmatin antiporter; Provisional; Region: PRK10644
198214011992	Spore germination protein; Region: Spore_permease; cl17796
198214011993	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214011994	putative metal dependent hydrolase; Provisional; Region: PRK11598
198214011995	Domain of unknown function (DUF1705); Region: DUF1705; pfam08019
198214011996	Sulfatase; Region: Sulfatase; pfam00884
198214011997	DNA-binding transcriptional regulator BasR; Provisional; Region: PRK10643
198214011998	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214011999	active site
198214012000	phosphorylation site [posttranslational modification]
198214012001	intermolecular recognition site; other site
198214012002	dimerization interface [polypeptide binding]; other site
198214012003	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214012004	DNA binding site [nucleotide binding]
198214012005	sensor protein BasS/PmrB; Provisional; Region: PRK10755
198214012006	HAMP domain; Region: HAMP; pfam00672
198214012007	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214012008	dimer interface [polypeptide binding]; other site
198214012009	phosphorylation site [posttranslational modification]
198214012010	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214012011	ATP binding site [chemical binding]; other site
198214012012	Mg2+ binding site [ion binding]; other site
198214012013	G-X-G motif; other site
198214012014	proline/glycine betaine transporter; Provisional; Region: PRK10642
198214012015	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214012016	putative substrate translocation pore; other site
198214012017	Osmosensory transporter coiled coil; Region: Osmo_CC; pfam08946
198214012018	YjcZ-like protein; Region: YjcZ; pfam13990
198214012019	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
198214012020	G1 box; other site
198214012021	GTP/Mg2+ binding site [chemical binding]; other site
198214012022	G2 box; other site
198214012023	Switch I region; other site
198214012024	G3 box; other site
198214012025	Switch II region; other site
198214012026	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cd00882
198214012027	G2 box; other site
198214012028	Switch I region; other site
198214012029	G3 box; other site
198214012030	Switch II region; other site
198214012031	G4 box; other site
198214012032	G5 box; other site
198214012033	hypothetical protein; Provisional; Region: PRK10220
198214012034	PhnA Zinc-Ribbon; Region: PhnA_Zn_Ribbon; pfam08274
198214012035	PhnA protein; Region: PhnA; pfam03831
198214012036	Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates; Region: PhnB_like; cd06588
198214012037	dimer interface [polypeptide binding]; other site
198214012038	phosphonate/organophosphate ester transporter subunit; Provisional; Region: PRK09984
198214012039	ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Region: ABC_PhnC_transporter; cd03256
198214012040	Walker A/P-loop; other site
198214012041	ATP binding site [chemical binding]; other site
198214012042	Q-loop/lid; other site
198214012043	ABC transporter signature motif; other site
198214012044	Walker B; other site
198214012045	D-loop; other site
198214012046	H-loop/switch region; other site
198214012047	phosphonate ABC transporter, periplasmic phosphonate binding protein; Region: PhnD; TIGR03431
198214012048	ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: PhnD; COG3221
198214012049	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012050	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012051	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012052	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012053	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790496 (529 aa). BLAST with identity of 98% in 526 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214012054	DNA-binding transcriptional regulator SoxS; Provisional; Region: PRK10219
198214012055	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214012056	redox-sensitivie transcriptional activator SoxR; Provisional; Region: PRK15002
198214012057	Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator; Region: HTH_SoxR; cd01110
198214012058	DNA binding residues [nucleotide binding]
198214012059	dimer interface [polypeptide binding]; other site
198214012060	[2Fe-2S] cluster binding site [ion binding]; other site
198214012061	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
198214012062	Sulfate transporter family; Region: Sulfate_transp; cl19250
198214012063	NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Region: NhaP; COG0025
198214012064	Na+/H+ antiporter, bacterial form; Region: a_cpa1; TIGR00831
198214012065	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
198214012066	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
198214012067	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
198214012068	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
198214012069	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
198214012070	Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain; Region: SLC5sbd_u4; cd11480
198214012071	Na binding site [ion binding]; other site
198214012072	Predicted membrane protein [Function unknown]; Region: COG3162
198214012073	Similar to Escherichia coli K12 acetyl-CoA synthetase gi: 1790505 (653 aa). BLAST with identity of 98% in 652 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214012074	cytochrome c nitrite reductase subunit c552; Provisional; Region: nrfA; PRK11125
198214012075	cytochrome c nitrite reductase pentaheme subunit; Provisional; Region: PRK11659
198214012076	Cytochrome c7; Region: Cytochrome_C7; cl19206
198214012077	Cytochrome c3; Region: Cytochrom_c3_2; pfam14537
198214012078	cytochrome c nitrite reductase, Fe-S protein; Region: cyt_nit_nrfC; TIGR03149
198214012079	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
198214012080	4Fe-4S dicluster domain; Region: Fer4_11; pfam13247
198214012081	cytochrome c nitrite reductase, NrfD subunit; Region: cyt_nit_nrfD; TIGR03148
198214012082	heme lyase subunit NrfE; Provisional; Region: PRK10369
198214012083	formate-dependent nitrite reductase complex subunit NrfF; Provisional; Region: PRK10144
198214012084	formate-dependent nitrite reductase complex subunit NrfG; Provisional; Region: PRK10370
198214012085	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
198214012086	binding surface
198214012087	TPR motif; other site
198214012088	glutamate/aspartate:proton symporter; Provisional; Region: gltP; PRK11283
198214012089	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
198214012090	Sel1-like repeats; Region: SEL1; smart00671
198214012091	Similar to Escherichia coli K12 selenopolypeptide subunit of formate dehydrogenase H gi: 3868721 (716 aa). BLAST with identity of 98% in 716 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214012092	putative outer membrane efflux protein MdtP; Provisional; Region: PRK09915
198214012093	Biotin-lipoyl like; Region: Biotin_lipoyl_2; cl19169
198214012094	Outer membrane efflux protein; Region: OEP; pfam02321
198214012095	multidrug efflux system protein MdtO; Provisional; Region: PRK11427
198214012096	Fusaric acid resistance protein-like; Region: FUSC_2; pfam13515
198214012097	multidrug resistance protein MdtN; Provisional; Region: PRK10476
198214012098	Biotin-lipoyl like; Region: Biotin_lipoyl_2; pfam13533
198214012099	Biotin-lipoyl like; Region: Biotin_lipoyl_2; cl19169
198214012100	HlyD family secretion protein; Region: HlyD_3; pfam13437
198214012101	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012102	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
198214012103	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
198214012104	dimer interface [polypeptide binding]; other site
198214012105	ssDNA binding site [nucleotide binding]; other site
198214012106	tetramer (dimer of dimers) interface [polypeptide binding]; other site
198214012107	putative single-stranded DNA-binding protein; Region: PHA01740
198214012108	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
198214012109	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
198214012110	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
198214012111	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
198214012112	Uncharacterized protein conserved in bacteria [Function unknown]; Region: MmcQ; COG2315
198214012113	secondary thiamine-phosphate synthase enzyme; Region: TIGR00149_YjbQ
198214012114	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214012115	active site
198214012116	motif I; other site
198214012117	motif II; other site
198214012118	Aminotransferase class I and II; Region: Aminotran_1_2; pfam00155
198214012119	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
198214012120	pyridoxal 5'-phosphate binding site [chemical binding]; other site
198214012121	homodimer interface [polypeptide binding]; other site
198214012122	catalytic residue [active]
198214012123	alanine racemase; Reviewed; Region: alr; PRK00053
198214012124	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827
198214012125	active site
198214012126	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
198214012127	substrate binding site [chemical binding]; other site
198214012128	catalytic residues [active]
198214012129	dimer interface [polypeptide binding]; other site
198214012130	replicative DNA helicase; Provisional; Region: PRK08006
198214012131	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
198214012132	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
198214012133	Walker A motif; other site
198214012134	ATP binding site [chemical binding]; other site
198214012135	Walker B motif; other site
198214012136	DNA binding loops [nucleotide binding]
198214012137	quinone oxidoreductase, NADPH-dependent; Provisional; Region: PRK10754
198214012138	Quinone oxidoreductase (QOR); Region: QOR2; cd05286
198214012139	NADP binding site [chemical binding]; other site
198214012140	dimer interface [polypeptide binding]; other site
198214012141	phage shock protein G; Reviewed; Region: pspG; PRK09459
198214012142	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
198214012143	Dihydrouridine synthase (Dus); Region: Dus; pfam01207
198214012144	FMN binding site [chemical binding]; other site
198214012145	active site
198214012146	catalytic residues [active]
198214012147	substrate binding site [chemical binding]; other site
198214012148	Protein of unknown function (DUF2713); Region: DUF2713; pfam10897
198214012149	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
198214012150	metal binding site 2 [ion binding]; metal-binding site
198214012151	putative DNA binding helix; other site
198214012152	metal binding site 1 [ion binding]; metal-binding site
198214012153	dimer interface [polypeptide binding]; other site
198214012154	structural Zn2+ binding site [ion binding]; other site
198214012155	hypothetical protein; Provisional; Region: PRK10428
198214012156	DNA-damage-inducible SOS response protein; Provisional; Region: PRK10367
198214012157	DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_DinF_like; cd13136
198214012158	LexA repressor; Validated; Region: PRK00215
198214012159	LexA DNA binding domain; Region: LexA_DNA_bind; pfam01726
198214012160	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
198214012161	Catalytic site [active]
198214012162	Integral membrane diacylglycerol kinase; Region: DAGK_IM; cd14264
198214012163	putative active site [active]
198214012164	trimer interface [polypeptide binding]; other site
198214012165	putative active site [active]
198214012166	Zn binding site [ion binding]; other site
198214012167	Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]; Region: PlsB; COG2937
198214012168	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like; Region: LPLAT_DHAPAT-like; cd07993
198214012169	putative acyl-acceptor binding pocket; other site
198214012170	4-Hydroxybenzoate polyprenyltransferase; Region: PT_UbiA_COQ2; cd13959
198214012171	putative active site [active]
198214012172	chorismate pyruvate lyase; Provisional; Region: ubiC; PRK11655
198214012173	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790471 (443 aa). BLAST with identity of 98% in 441 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214012174	maltose regulon periplasmic protein; Provisional; Region: PRK10564
198214012175	maltoporin; Provisional; Region: lamB; PRK09360
198214012176	The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel...; Region: Maltoporin-like; cd01346
198214012177	trimer interface; other site
198214012178	sugar binding site [chemical binding]; other site
198214012179	maltose/maltodextrin transporter ATP-binding protein; Provisional; Region: PRK11000
198214012180	The N-terminal ATPase domain of the maltose transporter, MalK; Region: ABC_MalK_N; cd03301
198214012181	Walker A/P-loop; other site
198214012182	ATP binding site [chemical binding]; other site
198214012183	Q-loop/lid; other site
198214012184	ABC transporter signature motif; other site
198214012185	Walker B; other site
198214012186	D-loop; other site
198214012187	H-loop/switch region; other site
198214012188	TOBE domain; Region: TOBE_2; pfam08402
198214012189	Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]; Region: MalE; COG2182
198214012190	maltose ABC transporter periplasmic protein; Reviewed; Region: malE; PRK09474
198214012191	maltose transporter membrane protein; Provisional; Region: malF; PRK10999
198214012192	Maltose transport system permease protein MalF P2 domain; Region: MalF_P2; pfam14785
198214012193	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214012194	dimer interface [polypeptide binding]; other site
198214012195	conserved gate region; other site
198214012196	putative PBP binding loops; other site
198214012197	ABC-ATPase subunit interface; other site
198214012198	ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395
198214012199	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
198214012200	dimer interface [polypeptide binding]; other site
198214012201	conserved gate region; other site
198214012202	putative PBP binding loops; other site
198214012203	ABC-ATPase subunit interface; other site
198214012204	D-xylose transporter XylE; Provisional; Region: xylE; PRK10077
198214012205	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214012206	putative substrate translocation pore; other site
198214012207	phosphate-starvation-inducible protein PsiE; Provisional; Region: PRK02833
198214012208	PTS system glucose-specific transporter subunits IIBC; Provisional; Region: PRK11089
198214012209	Bacterial putative lipoprotein (DUF940); Region: DUF940; pfam06082
198214012210	Capsule biosynthesis GfcC; Region: Caps_synth_GfcC; pfam06251
198214012211	Group 4 capsule polysaccharide formation lipoprotein gfcB; Region: Cap_synth_GfcB; pfam11102
198214012212	Exopolysaccharide production protein YjbE; Region: YjbE; pfam11106
198214012213	glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179
198214012214	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
198214012215	active site
198214012216	dimer interface [polypeptide binding]; other site
198214012217	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
198214012218	dimer interface [polypeptide binding]; other site
198214012219	active site
198214012220	aspartate kinase III; Validated; Region: PRK09084
198214012221	AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some...; Region: AAK_AKiii-LysC-EC; cd04258
198214012222	nucleotide binding site [chemical binding]; other site
198214012223	putative catalytic residues [active]
198214012224	aspartate binding site [chemical binding]; other site
198214012225	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
198214012226	ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII; Region: ACT_AKiii-LysC-EC_2; cd04917
198214012227	dimer interface [polypeptide binding]; other site
198214012228	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214012229	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214012230	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214012231	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214012232	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214012233	Homeodomain-like domain; Region: HTH_23; pfam13384
198214012234	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012235	Transposase; Region: HTH_Tnp_1; pfam01527
198214012236	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214012237	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012238	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214012239	HTH-like domain; Region: HTH_21; pfam13276
198214012240	Integrase core domain; Region: rve; pfam00665
198214012241	Integrase core domain; Region: rve_3; pfam13683
198214012242	RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]; Region: KptA; COG1859
198214012243	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3314
198214012244	Nucleoside recognition; Region: Gate; pfam07670
198214012245	hypothetical protein; Provisional; Region: PRK10519
198214012246	Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the...; Region: Isoaspartyl-dipeptidase; cd01308
198214012247	isoaspartyl dipeptidase IadA; Region: isoAsp_dipep; TIGR01975
198214012248	dimer interface [polypeptide binding]; other site
198214012249	active site
198214012250	cell density-dependent motility repressor; Provisional; Region: PRK10082
198214012251	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
198214012252	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
198214012253	dimerization interface [polypeptide binding]; other site
198214012254	DNA replication/recombination/repair protein; Provisional; Region: iraD; PRK14128
198214012255	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012256	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012257	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012258	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012259	Protein of unknown function (DUF2686); Region: DUF2686; pfam10887
198214012260	DNA-binding transcriptional repressor UxuR; Provisional; Region: PRK10225
198214012261	Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; Region: WHTH_GntR; cd07377
198214012262	DNA-binding site [nucleotide binding]; DNA binding site
198214012263	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214012264	D-mannonate oxidoreductase; Provisional; Region: PRK15037
198214012265	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
198214012266	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
198214012267	mannonate dehydratase; Region: uxuA; TIGR00695
198214012268	mannonate dehydratase; Provisional; Region: PRK03906
198214012269	fructuronate transporter; Provisional; Region: PRK10034
198214012270	GntP family permease; Region: GntP_permease; pfam02447
198214012271	Mannose binding  domain of FimH and related proteins; Region: FimH_man-bind; cd10466
198214012272	mannosyl binding site [chemical binding]; other site
198214012273	Fimbrial protein; Region: Fimbrial; pfam00419
198214012274	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214012275	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214012276	'Similar to Escherichia coli K12 outer membrane protein; export and assembly of type 1 fimbriae, interrupted gi: 1790772 (879 aa). BLAST with identity of 98% in 1137 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'
198214012277	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012278	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012279	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012280	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012281	fimbrial chaperone protein FimC; Provisional; Region: PRK15195
198214012282	Pili and flagellar-assembly chaperone, PapD N-terminal domain; Region: PapD_N; pfam00345
198214012283	Pili assembly chaperone PapD, C-terminal domain; Region: PapD_C; pfam02753
198214012284	P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimA; COG3539
198214012285	Fimbrial protein; Region: Fimbrial; cl01416
198214012286	FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI; Region: INT_FimBE_C; cd01197
198214012287	Int/Topo IB signature motif; other site
198214012288	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
198214012289	active site
198214012290	Int/Topo IB signature motif; other site
198214012291	DNA binding site [nucleotide binding]
198214012292	Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; cl11629
198214012293	N-acetylneuraminic acid mutarotase; Provisional; Region: PRK14131
198214012294	Kelch motif; Region: Kelch_1; pfam01344
198214012295	Domain of unknown function (DUF303); Region: DUF303; pfam03629
198214012296	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012297	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012298	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012299	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012300	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214012301	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012302	Transposase; Region: HTH_Tnp_1; pfam01527
198214012303	putative transposase OrfB; Reviewed; Region: PHA02517
198214012304	HTH-like domain; Region: HTH_21; pfam13276
198214012305	Integrase core domain; Region: rve; pfam00665
198214012306	Integrase core domain; Region: rve_2; pfam13333
198214012307	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790648 (265 aa). BLAST with identity of 95% in 76 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214012308	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012309	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012310	Transposase; Region: HTH_Tnp_1; cl17663
198214012311	putative transposase OrfB; Reviewed; Region: PHA02517
198214012312	HTH-like domain; Region: HTH_21; pfam13276
198214012313	Integrase core domain; Region: rve; pfam00665
198214012314	Integrase core domain; Region: rve_3; pfam13683
198214012315	integrase; Provisional; Region: PRK09692
198214012316	Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements.  They share the same fold in their catalytic domain and the overall...; Region: INT_P4; cd00801
198214012317	active site
198214012318	Int/Topo IB signature motif; other site
198214012319	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
198214012320	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283
198214012321	putative NAD(P) binding site [chemical binding]; other site
198214012322	putative substrate binding site [chemical binding]; other site
198214012323	catalytic Zn binding site [ion binding]; other site
198214012324	structural Zn binding site [ion binding]; other site
198214012325	dimer interface [polypeptide binding]; other site
198214012326	Bacterial protein of unknown function (DUF853); Region: DUF853; pfam05872
198214012327	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214012328	Walker A motif; other site
198214012329	ATP binding site [chemical binding]; other site
198214012330	lipopolysaccharide ABC transporter permease; Provisional; Region: PRK15071
198214012331	lipopolysaccharide ABC transporter permease LptF; Provisional; Region: PRK15120
198214012332	multifunctional aminopeptidase A; Provisional; Region: PRK00913
198214012333	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
198214012334	interface (dimer of trimers) [polypeptide binding]; other site
198214012335	Substrate-binding/catalytic site; other site
198214012336	Zn-binding sites [ion binding]; other site
198214012337	DNA polymerase III subunit chi; Validated; Region: PRK05728
198214012338	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
198214012339	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
198214012340	active site
198214012341	HIGH motif; other site
198214012342	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
198214012343	KMSKS motif; other site
198214012344	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
198214012345	tRNA binding surface [nucleotide binding]; other site
198214012346	anticodon binding site; other site
198214012347	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
198214012348	Predicted membrane protein [Function unknown]; Region: COG4269
198214012349	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
198214012350	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214012351	Coenzyme A binding pocket [chemical binding]; other site
198214012352	RNase E inhibitor protein; Provisional; Region: PRK11191
198214012353	ornithine carbamoyltransferase subunit I; Provisional; Region: PRK03515
198214012354	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
198214012355	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
198214012356	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012357	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012358	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012359	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012360	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790702 (617 aa). BLAST with identity of 90% in 252 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214012361	uncharacterized protein, YhcH/YjgK/YiaL family; Region: TIGR00022
198214012362	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
198214012363	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214012364	oxidoreductase; Provisional; Region: PRK12742
198214012365	classical (c) SDRs; Region: SDR_c; cd05233
198214012366	NAD(P) binding site [chemical binding]; other site
198214012367	active site
198214012368	YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgH_like; cd02198
198214012369	homotrimer interaction site [polypeptide binding]; other site
198214012370	putative active site [active]
198214012371	pyrBI operon leader peptide; Provisional; Region: PRK10224
198214012372	aspartate carbamoyltransferase; Region: asp_carb_tr; TIGR00670
198214012373	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
198214012374	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
198214012375	aspartate carbamoyltransferase regulatory subunit; Reviewed; Region: PRK00893
198214012376	Aspartate carbamoyltransferase regulatory chain, allosteric domain; Region: PyrI; pfam01948
198214012377	Aspartate carbamoyltransferase regulatory chain, metal binding domain; Region: PyrI_C; pfam02748
198214012378	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
198214012379	homotrimer interaction site [polypeptide binding]; other site
198214012380	putative active site [active]
198214012381	magnesium-transporting ATPase MgtA; Provisional; Region: PRK10517
198214012382	Cation transporter/ATPase, N-terminus; Region: Cation_ATPase_N; pfam00690
198214012383	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
198214012384	Putative hydrolase of sodium-potassium ATPase alpha subunit; Region: Hydrolase_like2; pfam13246
198214012385	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214012386	motif II; other site
198214012387	Cation transporting ATPase, C-terminus; Region: Cation_ATPase_C; pfam00689
198214012388	trehalose repressor; Provisional; Region: treR; PRK09492
198214012389	Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators; Region: HTH_LacI; cd01392
198214012390	DNA binding site [nucleotide binding]
198214012391	domain linker motif; other site
198214012392	Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_TreR_like; cd01542
198214012393	dimerization interface [polypeptide binding]; other site
198214012394	ligand binding site [chemical binding]; other site
198214012395	PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional; Region: PRK11007
198214012396	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
198214012397	active site turn [active]
198214012398	phosphorylation site [posttranslational modification]
198214012399	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
198214012400	trehalose-6-phosphate hydrolase; Provisional; Region: PRK10933
198214012401	Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins; Region: AmyAc_SI_OligoGlu_DGase; cd11333
198214012402	Ca binding site [ion binding]; other site
198214012403	active site
198214012404	catalytic site [active]
198214012405	Domain of unknown function (DUF3459); Region: DUF3459; pfam11941
198214012406	anaerobic ribonucleoside triphosphate reductase; Provisional; Region: PRK09263
198214012407	ATP cone domain; Region: ATP-cone; pfam03477
198214012408	Class III ribonucleotide reductase; Region: RNR_III; cd01675
198214012409	effector binding site; other site
198214012410	active site
198214012411	Zn binding site [ion binding]; other site
198214012412	glycine loop; other site
198214012413	anaerobic ribonucleoside-triphosphate reductase activating protein; Region: NrdG; TIGR02491
198214012414	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214012415	FeS/SAM binding site; other site
198214012416	Cytochrome b562; Region: Cytochrom_B562; cl01546
198214012417	peptidase PmbA; Provisional; Region: PRK11040
198214012418	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3028
198214012419	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Region: mpl; TIGR01081
198214012420	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
198214012421	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
198214012422	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
198214012423	Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate  into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1; Region: FBPase; cd00354
198214012424	AMP binding site [chemical binding]; other site
198214012425	metal binding site [ion binding]; metal-binding site
198214012426	active site
198214012427	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214012428	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214012429	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214012430	Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group...; Region: TM_PBP1_transp_AraH_like; cd06579
198214012431	TM-ABC transporter signature motif; other site
198214012432	ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129
198214012433	First domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_I; cd03216
198214012434	Walker A/P-loop; other site
198214012435	ATP binding site [chemical binding]; other site
198214012436	Q-loop/lid; other site
198214012437	ABC transporter signature motif; other site
198214012438	Walker B; other site
198214012439	D-loop; other site
198214012440	H-loop/switch region; other site
198214012441	Second domain of the ATP-binding cassette component of monosaccharide transport system; Region: ABC_Carb_Monos_II; cd03215
198214012442	Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412
198214012443	dimer interface [polypeptide binding]; other site
198214012444	substrate binding site [chemical binding]; other site
198214012445	metal binding sites [ion binding]; metal-binding site
198214012446	GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is...; Region: GGCT_like; cd06661
198214012447	putative active site pocket [active]
198214012448	dimerization interface [polypeptide binding]; other site
198214012449	putative catalytic residue [active]
198214012450	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2911
198214012451	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
198214012452	Family of unknown function (DUF490); Region: DUF490; pfam04357
198214012453	Outer membrane protein [Cell envelope biogenesis, outer membrane]; Region: COG0729
198214012454	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214012455	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
198214012456	Surface antigen; Region: Bac_surface_Ag; pfam01103
198214012457	methionine sulfoxide reductase A; Provisional; Region: PRK00058
198214012458	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
198214012459	Domain of unknown function DUF21; Region: DUF21; pfam01595
198214012460	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
198214012461	Transporter associated domain; Region: CorC_HlyC; smart01091
198214012462	Protein of unknown function (DUF1107); Region: DUF1107; pfam06526
198214012463	Predicted transcriptional regulator [General function prediction only]; Region: COG3054
198214012464	CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in...; Region: CysQ; cd01638
198214012465	active site
198214012466	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed; Region: cpdB; PRK09420
198214012467	Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain; Region: MPP_CpdB_N; cd07410
198214012468	active site
198214012469	metal binding site [ion binding]; metal-binding site
198214012470	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
198214012471	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
198214012472	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
198214012473	triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; Region: TMR_SDR_a; cd05269
198214012474	NADP binding site [chemical binding]; other site
198214012475	Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]; Region: RhaT; COG0697
198214012476	EamA-like transporter family; Region: EamA; pfam00892
198214012477	iron-sulfur cluster repair di-iron protein; Provisional; Region: PRK10992
198214012478	Domain of Unknown function (DUF542); Region: ScdA_N; pfam04405
198214012479	Hemerythrin-like domain; Region: Hr-like; cd12108
198214012480	Fe binding site [ion binding]; other site
198214012481	D-alanine/D-serine/glycine permease; Provisional; Region: PRK11049
198214012482	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214012483	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
198214012484	peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK11570
198214012485	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
198214012486	Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]; Region: OapA; COG3061
198214012487	Opacity-associated protein A N-terminal motif; Region: OapA_N; pfam08525
198214012488	Opacity-associated protein A LysM-like domain; Region: OapA; pfam04225
198214012489	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
198214012490	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
198214012491	3-ketoacyl-(acyl-carrier-protein) reductase; Provisional; Region: PRK12745
198214012492	putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR; Region: BKR_1_SDR_c; cd05337
198214012493	putative NAD(P) binding site [chemical binding]; other site
198214012494	active site
198214012495	Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Region: IolE; COG1082
198214012496	Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261
198214012497	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012498	putative transposase OrfB; Reviewed; Region: PHA02517
198214012499	HTH-like domain; Region: HTH_21; pfam13276
198214012500	Integrase core domain; Region: rve; pfam00665
198214012501	Integrase core domain; Region: rve_3; pfam13683
198214012502	lysine/cadaverine antiporter; Provisional; Region: cadB; PRK10435
198214012503	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012504	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012505	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012506	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012507	putative transcriptional regulator; Provisional; Region: PRK11640
198214012508	Bacterial regulatory proteins, tetR family; Region: TetR_N; cl19382
198214012509	thiol:disulfide interchange protein precursor; Provisional; Region: dipZ; PRK00293
198214012510	Disulphide bond corrector protein DsbC; Region: DsbC; pfam11412
198214012511	Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]; Region: CcdA; COG0785
198214012512	DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD...; Region: DsbDgamma; cd02953
198214012513	DsbD alpha interface [polypeptide binding]; other site
198214012514	catalytic residues [active]
198214012515	divalent-cation tolerance protein CutA; Provisional; Region: PRK10645
198214012516	anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK09412
198214012517	aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273
198214012518	Aspartase; Region: Aspartase; cd01357
198214012519	active sites [active]
198214012520	tetramer interface [polypeptide binding]; other site
198214012521	Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]; Region: FxsA; COG3030
198214012522	putative transporter; Provisional; Region: PRK11021
198214012523	Transmembrane amino acid transporter protein; Region: Aa_trans; cl17468
198214012524	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
198214012525	oligomerisation interface [polypeptide binding]; other site
198214012526	mobile loop; other site
198214012527	roof hairpin; other site
198214012528	chaperonin GroEL; Reviewed; Region: groEL; PRK12850
198214012529	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
198214012530	ring oligomerisation interface [polypeptide binding]; other site
198214012531	ATP/Mg binding site [chemical binding]; other site
198214012532	stacking interactions; other site
198214012533	hinge regions; other site
198214012534	Domain of unknown function (DUF4156); Region: DUF4156; pfam13698
198214012535	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012536	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012537	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012538	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012539	Lysine 2,3-aminomutase [Amino acid transport and metabolism]; Region: KamA; COG1509
198214012540	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214012541	FeS/SAM binding site; other site
198214012542	elongation factor P; Validated; Region: PRK00529
198214012543	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
198214012544	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
198214012545	RNA binding site [nucleotide binding]; other site
198214012546	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
198214012547	RNA binding site [nucleotide binding]; other site
198214012548	entericidin A; Provisional; Region: PRK09810
198214012549	entericidin B membrane lipoprotein; Provisional; Region: PRK10081
198214012550	multidrug efflux system protein; Provisional; Region: PRK11431
198214012551	outer membrane lipoprotein Blc; Provisional; Region: PRK10477
198214012552	beta-lactamase/D-alanine carboxypeptidase; Provisional; Region: ampC; PRK11289
198214012553	Quinol:fumarate reductase (QFR) Type D subfamily, 13kD hydrophobic subunit D; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine...; Region: QFR_TypeD_subunitD; cd00547
198214012554	Iron-sulfur protein interface; other site
198214012555	proximal quinone binding site [chemical binding]; other site
198214012556	C-subunit interface; other site
198214012557	distal quinone binding site; other site
198214012558	Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C;  QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine...; Region: QFR_TypeD_subunitC; cd00546
198214012559	D-subunit interface [polypeptide binding]; other site
198214012560	Iron-sulfur protein interface; other site
198214012561	proximal quinone binding site [chemical binding]; other site
198214012562	distal quinone binding site [chemical binding]; other site
198214012563	fumarate reductase iron-sulfur subunit; Provisional; Region: PRK12385
198214012564	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
198214012565	4Fe-4S dicluster domain; Region: Fer4_8; pfam13183
198214012566	fumarate reductase flavoprotein subunit; Validated; Region: PRK09231
198214012567	L-aspartate oxidase; Provisional; Region: PRK06175
198214012568	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
198214012569	poxB regulator PoxA; Provisional; Region: PRK09350
198214012570	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
198214012571	motif 1; other site
198214012572	dimer interface [polypeptide binding]; other site
198214012573	active site
198214012574	motif 2; other site
198214012575	motif 3; other site
198214012576	Similar to Escherichia coli K12  transport gi: 1790600 (515 aa). BLAST with identity of 97% in 758 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.
198214012577	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012578	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012579	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012580	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012581	putative mechanosensitive channel protein; Provisional; Region: PRK10929
198214012582	linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated...; Region: H15; cl00073
198214012583	DNA-binding site [nucleotide binding]; DNA binding site
198214012584	Apolipophorin-III and similar insect proteins; Region: ApoLp-III_like; cl19113
198214012585	Mechanosensitive ion channel inner membrane domain 1; Region: MscS_TM; pfam12794
198214012586	Mechanosensitive ion channel; Region: MS_channel; pfam00924
198214012587	phosphatidylserine decarboxylase; Reviewed; Region: psd; PRK00044
198214012588	GTPase RsgA; Reviewed; Region: PRK12288
198214012589	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
198214012590	RNA binding site [nucleotide binding]; other site
198214012591	Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; Region: YjeQ_EngC; cd01854
198214012592	GTPase/Zn-binding domain interface [polypeptide binding]; other site
198214012593	GTP/Mg2+ binding site [chemical binding]; other site
198214012594	G4 box; other site
198214012595	G5 box; other site
198214012596	G1 box; other site
198214012597	Switch I region; other site
198214012598	G2 box; other site
198214012599	G3 box; other site
198214012600	Switch II region; other site
198214012601	DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins; Region: Orn; cd06135
198214012602	catalytic site [active]
198214012603	putative active site [active]
198214012604	putative substrate binding site [chemical binding]; other site
198214012605	dimer interface [polypeptide binding]; other site
198214012606	epoxyqueuosine reductase; Region: TIGR00276
198214012607	Domain of unknown function (DUF1730); Region: DUF1730; pfam08331
198214012608	4Fe-4S double cluster binding domain; Region: Fer4_16; pfam13484
198214012609	putative carbohydrate kinase; Provisional; Region: PRK10565
198214012610	yjeF N-terminal region; Region: yjeF_nterm; TIGR00197
198214012611	B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171
198214012612	putative substrate binding site [chemical binding]; other site
198214012613	putative ATP binding site [chemical binding]; other site
198214012614	ADP-binding protein; Provisional; Region: PRK10646
198214012615	GTPase SAR1 and related small G proteins [General function prediction only]; Region: COG1100
198214012616	N-acetylmuramoyl-l-alanine amidase II; Provisional; Region: PRK10431
198214012617	AMIN domain; Region: AMIN; pfam11741
198214012618	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
198214012619	active site
198214012620	metal binding site [ion binding]; metal-binding site
198214012621	DNA mismatch repair protein; Reviewed; Region: mutL; PRK00095
198214012622	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214012623	ATP binding site [chemical binding]; other site
198214012624	Mg2+ binding site [ion binding]; other site
198214012625	G-X-G motif; other site
198214012626	MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL.  EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family.  This transducer domain is homologous to the second...; Region: MutL_Trans_MutL; cd03482
198214012627	ATP binding site [chemical binding]; other site
198214012628	MutL C terminal dimerization domain; Region: MutL_C; pfam08676
198214012629	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
198214012630	bacterial Hfq-like; Region: Hfq; cd01716
198214012631	hexamer interface [polypeptide binding]; other site
198214012632	Sm1 motif; other site
198214012633	RNA binding site [nucleotide binding]; other site
198214012634	Sm2 motif; other site
198214012635	GTPase HflX; Provisional; Region: PRK11058
198214012636	GTP-binding GTPase N-terminal; Region: GTP-bdg_N; pfam13167
198214012637	HflX GTPase family; Region: HflX; cd01878
198214012638	G1 box; other site
198214012639	GTP/Mg2+ binding site [chemical binding]; other site
198214012640	Switch I region; other site
198214012641	G2 box; other site
198214012642	G3 box; other site
198214012643	Switch II region; other site
198214012644	G4 box; other site
198214012645	G5 box; other site
198214012646	FtsH protease regulator HflK; Provisional; Region: PRK10930
198214012647	Bacterial membrane protein N terminal; Region: HflK_N; pfam12221
198214012648	High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; Region: SPFH_HflK; cd03404
198214012649	HflC protein; Region: hflC; TIGR01932
198214012650	High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; Region: SPFH_HflC; cd03405
198214012651	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3242
198214012652	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
198214012653	GDP-binding site [chemical binding]; other site
198214012654	ACT binding site; other site
198214012655	IMP binding site; other site
198214012656	transcriptional repressor NsrR; Provisional; Region: PRK11014
198214012657	Rrf2 family protein; Region: rrf2_super; TIGR00738
198214012658	exoribonuclease R; Provisional; Region: PRK11642
198214012659	Ribonuclease R winged-helix domain; Region: HTH_12; pfam08461
198214012660	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
198214012661	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
198214012662	This domain is the catalytic domain of ribonuclease II; Region: RNB; smart00955
198214012663	S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase...; Region: S1_RNase_R; cd04471
198214012664	RNA binding site [nucleotide binding]; other site
198214012665	23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional; Region: PRK11181
198214012666	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; smart00967
198214012667	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
198214012668	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012669	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012670	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012671	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012672	Predicted integral membrane protein [Function unknown]; Region: COG5463
198214012673	Glutathionylspermidine synthase [Amino acid transport and metabolism]; Region: Gsp; COG0754
198214012674	Proteins involved in DNA damage response, similar to the AidB gene product; Region: AidB; cd01154
198214012675	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
198214012676	FAD binding site [chemical binding]; other site
198214012677	substrate binding site [chemical binding]; other site
198214012678	catalytic residues [active]
198214012679	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012680	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012681	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012682	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012683	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214012684	putative biofilm stress and motility protein A; Provisional; Region: PRK14864
198214012685	esterase; Provisional; Region: PRK10566
198214012686	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
198214012687	transcriptional repressor UlaR; Provisional; Region: PRK13509
198214012688	DeoR-like helix-turn-helix domain; Region: HTH_DeoR; pfam08220
198214012689	DeoR C terminal sensor domain; Region: DeoRC; pfam00455
198214012690	putative L-ascorbate 6-phosphate lactonase; Provisional; Region: PRK11709
198214012691	Uncharacterized protein conserved in bacteria [Function unknown]; Region: SgaT; COG3037
198214012692	PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a...; Region: PTS_IIB_ascorbate; cd05563
198214012693	active site
198214012694	P-loop; other site
198214012695	phosphorylation site [posttranslational modification]
198214012696	PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211
198214012697	active site
198214012698	phosphorylation site [posttranslational modification]
198214012699	3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for...; Region: KGPDC_HPS; cd04726
198214012700	active site
198214012701	dimer interface [polypeptide binding]; other site
198214012702	magnesium binding site [ion binding]; other site
198214012703	L-xylulose 5-phosphate 3-epimerase; Reviewed; Region: PRK13209
198214012704	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
198214012705	AP (apurinic/apyrimidinic) site pocket; other site
198214012706	DNA interaction; other site
198214012707	Metal-binding active site; metal-binding site
198214012708	Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II); Region: Aldolase_II; cd00398
198214012709	intersubunit interface [polypeptide binding]; other site
198214012710	active site
198214012711	Zn2+ binding site [ion binding]; other site
198214012712	Protein of unknown function (DUF1471); Region: DUF1471; pfam07338
198214012713	30S ribosomal protein S6; Reviewed; Region: rpsF; PRK00453
198214012714	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
198214012715	dimer interface [polypeptide binding]; other site
198214012716	ssDNA binding site [nucleotide binding]; other site
198214012717	tetramer (dimer of dimers) interface [polypeptide binding]; other site
198214012718	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
198214012719	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
198214012720	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
198214012721	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
198214012722	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790648 (265 aa). BLAST with identity of 97% in 185 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214012723	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012724	Transposase; Region: HTH_Tnp_1; pfam01527
198214012725	HTH-like domain; Region: HTH_21; pfam13276
198214012726	Integrase core domain; Region: rve; pfam00665
198214012727	putative transposase OrfB; Reviewed; Region: PHA02517
198214012728	HTH-like domain; Region: HTH_21; pfam13276
198214012729	Integrase core domain; Region: rve; pfam00665
198214012730	Integrase core domain; Region: rve_3; pfam13683
198214012731	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012732	Transposase; Region: HTH_Tnp_1; pfam01527
198214012733	Uncharacterized conserved protein [Function unknown]; Region: COG3586
198214012734	endoribonuclease SymE; Provisional; Region: PRK13605
198214012735	Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732
198214012736	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
198214012737	Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732
198214012738	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
198214012739	HsdM N-terminal domain; Region: HsdM_N; pfam12161
198214012740	N-6 DNA Methylase; Region: N6_Mtase; pfam02384
198214012741	Methyltransferase domain; Region: Methyltransf_26; pfam13659
198214012742	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]; Region: HsdR; COG4096
198214012743	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; pfam04313
198214012744	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
198214012745	ATP binding site [chemical binding]; other site
198214012746	putative Mg++ binding site [ion binding]; other site
198214012747	EcoEI R protein C-terminal; Region: EcoEI_R_C; pfam08463
198214012748	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012749	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012750	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012751	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012752	L-lactate permease; Region: Lactate_perm; cl00701
198214012753	putative GTP-binding protein YjiA; Provisional; Region: PRK11537
198214012754	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
198214012755	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; pfam07683
198214012756	Uncharacterized small protein [Function unknown]; Region: COG2879
198214012757	carbon starvation protein A; Provisional; Region: PRK15015
198214012758	Carbon starvation protein CstA; Region: CstA; pfam02554
198214012759	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
198214012760	4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional; Region: hpaC; PRK15486
198214012761	Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]; Region: ElaC; COG1234
198214012762	4-hydroxyphenylacetate catabolism regulatory protein HpaA; Region: HpaA; TIGR02297
198214012763	Cupin; Region: Cupin_6; pfam12852
198214012764	Cupin domain; Region: Cupin_2; pfam07883
198214012765	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214012766	4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332
198214012767	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214012768	putative substrate translocation pore; other site
198214012769	HpcH/HpaI aldolase/citrate lyase family; Region: HpcH_HpaI; cl17231
198214012770	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
198214012771	5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the...; Region: CHMI; cd00580
198214012772	putative substrate binding pocket [chemical binding]; other site
198214012773	trimer interface [polypeptide binding]; other site
198214012774	The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate; Region: HPCD; cd07370
198214012775	putative active site [active]
198214012776	putative metal binding site [ion binding]; other site
198214012777	Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093
198214012778	NAD binding site [chemical binding]; other site
198214012779	catalytic residues [active]
198214012780	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional; Region: PRK15203
198214012781	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit; Region: HpaG-N-term; TIGR02305
198214012782	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
198214012783	homoprotocatechuate degradation operon regulator, HpaR; Region: HpaR; TIGR02337
198214012784	Transcriptional regulators [Transcription]; Region: MarR; COG1846
198214012785	methyl-accepting chemotaxis protein I; Provisional; Region: PRK15041
198214012786	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cd00181
198214012787	dimer interface [polypeptide binding]; other site
198214012788	ligand binding site [chemical binding]; other site
198214012789	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214012790	dimerization interface [polypeptide binding]; other site
198214012791	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
198214012792	dimer interface [polypeptide binding]; other site
198214012793	putative CheW interface [polypeptide binding]; other site
198214012794	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214012795	D-galactonate transporter; Region: 2A0114; TIGR00893
198214012796	putative substrate translocation pore; other site
198214012797	Transcriptional regulators [Transcription]; Region: GntR; COG1802
198214012798	This entry represents the C-terminal ligand binding domain of many members of the GntR family; Region: FCD; smart00895
198214012799	Similar to Escherichia coli K12  oxidoreductase gi: 1790819 (346 aa). BLAST with identity of 98% in 346 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214012800	phosphoglycerol transferase I; Provisional; Region: PRK03776
198214012801	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]; Region: MdoB; COG1368
198214012802	hypothetical protein; Provisional; Region: PRK11667
198214012803	DNA replication protein DnaC; Validated; Region: PRK07952
198214012804	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214012805	Walker A motif; other site
198214012806	ATP binding site [chemical binding]; other site
198214012807	Walker B motif; other site
198214012808	primosomal protein DnaI; Provisional; Region: PRK02854
198214012809	hypothetical protein; Provisional; Region: PRK09917
198214012810	Uncharacterized conserved protein [Function unknown]; Region: COG2966
198214012811	Protein of unknown function (DUF1212); Region: DUF1212; pfam06738
198214012812	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214012813	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214012814	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214012815	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012816	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
198214012817	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214012818	DNA binding residues [nucleotide binding]
198214012819	dimerization interface [polypeptide binding]; other site
198214012820	DNA-binding transcriptional activator BglJ; Provisional; Region: PRK11475
198214012821	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
198214012822	DNA binding residues [nucleotide binding]
198214012823	dimerization interface [polypeptide binding]; other site
198214012824	ferric iron reductase involved in ferric hydroximate transport; Provisional; Region: PRK10647
198214012825	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
198214012826	FhuF 2Fe-2S C-terminal domain; Region: FhuF_C; pfam11575
198214012827	Protein of unknown function (DUF1435); Region: DUF1435; pfam07256
198214012828	16S ribosomal RNA m2G1207 methyltransferase; Provisional; Region: rsmC; PRK09489
198214012829	Methyltransferase small domain N-terminal; Region: MTS_N; pfam08468
198214012830	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
198214012831	S-adenosylmethionine binding site [chemical binding]; other site
198214012832	DNA polymerase III, psi subunit [DNA replication, recombination, and repair]; Region: HolD; COG3050
198214012833	ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575
198214012834	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214012835	Coenzyme A binding pocket [chemical binding]; other site
198214012836	HAD superfamily (subfamily IA) hydrolase, TIGR02254; Region: YjjG/YfnB
198214012837	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214012838	motif II; other site
198214012839	peptide chain release factor 3; Provisional; Region: prfC; PRK00741
198214012840	Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria; Region: RF3; cd04169
198214012841	G1 box; other site
198214012842	putative GEF interaction site [polypeptide binding]; other site
198214012843	GTP/Mg2+ binding site [chemical binding]; other site
198214012844	Switch I region; other site
198214012845	G2 box; other site
198214012846	G3 box; other site
198214012847	Switch II region; other site
198214012848	G4 box; other site
198214012849	G5 box; other site
198214012850	RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the...; Region: RF3_II; cd03689
198214012851	Elongation Factor G, domain II; Region: EFG_II; pfam14492
198214012852	periplasmic protein; Provisional; Region: PRK10568
198214012853	BON domain; Region: BON; pfam04972
198214012854	BON domain; Region: BON; pfam04972
198214012855	Small integral membrane protein [Function unknown]; Region: COG5487
198214012856	Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]; Region: COG4667
198214012857	Hypothetical patatin similar to yjju protein of Escherichia coli; Region: Pat_hypo_Ecoli_yjju_like; cd07208
198214012858	active site
198214012859	nucleophile elbow; other site
198214012860	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
198214012861	active site
198214012862	glycine radical enzyme activase, YjjW family; Region: activase_YjjW; TIGR04041
198214012863	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
198214012864	FeS/SAM binding site; other site
198214012865	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl19102
198214012866	hypothetical protein; Provisional; Region: PRK10977
198214012867	Ribonucleotide reductase and Pyruvate formate lyase; Region: RNR_PFL; cl09939
198214012868	2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959
198214012869	intersubunit interface [polypeptide binding]; other site
198214012870	active site
198214012871	catalytic residue [active]
198214012872	thymidine phosphorylase; Reviewed; Region: deoA; PRK05820
198214012873	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
198214012874	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
198214012875	Pyrimidine nucleoside phosphorylase C-terminal domain; Region: PYNP_C; pfam07831
198214012876	phosphopentomutase; Provisional; Region: PRK05362
198214012877	purine nucleoside phosphorylase; Reviewed; Region: deoD; PRK05819
198214012878	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
198214012879	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214012880	non-specific DNA binding site [nucleotide binding]; other site
198214012881	salt bridge; other site
198214012882	sequence-specific DNA binding site [nucleotide binding]; other site
198214012883	Similar to Escherichia coli K12 lipoate-protein ligase A gi: 1790846 (339 aa). BLAST with identity of 97% in 338 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214012884	hypothetical protein; Provisional; Region: PRK11246
198214012885	phosphoserine phosphatase; Provisional; Region: serB; PRK11133
198214012886	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
198214012887	motif II; other site
198214012888	DNA repair protein RadA; Region: sms; TIGR00416
198214012889	Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121
198214012890	Walker A motif/ATP binding site; other site
198214012891	ATP binding site [chemical binding]; other site
198214012892	Walker B motif; other site
198214012893	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
198214012894	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
198214012895	non-specific DNA binding site [nucleotide binding]; other site
198214012896	salt bridge; other site
198214012897	bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional; Region: PRK08099
198214012898	sequence-specific DNA binding site [nucleotide binding]; other site
198214012899	Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins; Region: NMNAT_NadR; cd02167
198214012900	active site
198214012901	(T/H)XGH motif; other site
198214012902	Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]; Region: NadR; COG3172
198214012903	putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819
198214012904	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214012905	The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature; Region: BAR; cl12013
198214012906	ABC transporter; Region: ABC_tran_2; pfam12848
198214012907	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
198214012908	lytic murein transglycosylase; Provisional; Region: PRK11619
198214012909	Soluble lytic murein transglycosylase L domain; Region: SLT_L; pfam14718
198214012910	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214012911	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214012912	catalytic residue [active]
198214012913	Trp operon repressor [Transcription]; Region: TrpR; COG2973
198214012914	Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790855 (174 aa). BLAST with identity of 95% in 172 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.
198214012915	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
198214012916	catalytic core [active]
198214012917	right oriC-binding transcriptional activator; Provisional; Region: PRK15121
198214012918	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214012919	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214012920	GyrI-like small molecule binding domain; Region: GyrI-like; pfam06445
198214012921	hypothetical protein; Provisional; Region: PRK10756
198214012922	DNA-binding response regulator CreB; Provisional; Region: PRK11083
198214012923	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214012924	active site
198214012925	phosphorylation site [posttranslational modification]
198214012926	intermolecular recognition site; other site
198214012927	dimerization interface [polypeptide binding]; other site
198214012928	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214012929	DNA binding site [nucleotide binding]
198214012930	sensory histidine kinase CreC; Provisional; Region: PRK11100
198214012931	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
198214012932	dimerization interface [polypeptide binding]; other site
198214012933	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
198214012934	dimer interface [polypeptide binding]; other site
198214012935	phosphorylation site [posttranslational modification]
198214012936	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
198214012937	ATP binding site [chemical binding]; other site
198214012938	Mg2+ binding site [ion binding]; other site
198214012939	G-X-G motif; other site
198214012940	Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]; Region: CreD; COG4452
198214012941	two-component response regulator; Provisional; Region: PRK11173
198214012942	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
198214012943	active site
198214012944	phosphorylation site [posttranslational modification]
198214012945	intermolecular recognition site; other site
198214012946	dimerization interface [polypeptide binding]; other site
198214012947	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
198214012948	DNA binding site [nucleotide binding]
198214012949	putative RNA methyltransferase; Provisional; Region: PRK10433
198214012950	RNA methyltransferase, TrmH family, group 1; Region: rRNA_methyl_1; TIGR00050
198214012951	Integrase core domain; Region: rve_3; pfam13683
198214012952	PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains...; Region: PAP2_acid_phosphatase; cd03397
198214012953	active site
198214012954	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
198214012955	Shigella flexneri OspC protein; Region: Shigella_OspC; pfam06128
198214012956	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214012957	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214012958	HTH-like domain; Region: HTH_21; pfam13276
198214012959	putative transposase OrfB; Reviewed; Region: PHA02517
198214012960	HTH-like domain; Region: HTH_21; pfam13276
198214012961	Integrase core domain; Region: rve; pfam00665
198214012962	Integrase core domain; Region: rve_3; pfam13683
198214012963	ShET2 enterotoxin, N-terminal region; Region: Toxin_15; pfam07906
198214012964	type III effector phosphothreonine lyase; Provisional; Region: PRK15245
198214012965	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3464
198214012966	Transposase; Region: DDE_Tnp_ISL3; pfam01610
198214012967	Transposase; Region: DDE_Tnp_ISL3; pfam01610
198214012968	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012969	Putative transposase; Region: Y2_Tnp; pfam04986
198214012970	Insertion element 4 transposase N-terminal; Region: Nterm_IS4; pfam13006
198214012971	FOG: Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3385
198214012972	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214012973	Transposase; Region: HTH_Tnp_1; pfam01527
198214012974	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214012975	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214012976	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214012977	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214012978	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214012979	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214012980	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214012981	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
198214012982	Transposase, Mutator family; Region: Transposase_mut; cl19537
198214012983	IpaB/EvcA family; Region: IpaB_EvcA; pfam03278
198214012984	Integrase core domain; Region: rve; pfam00665
198214012985	Integrase core domain; Region: rve_2; pfam13333
198214012986	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
198214012987	Helix-turn-helix domain; Region: HTH_38; pfam13936
198214012988	DNA-binding interface [nucleotide binding]; DNA binding site
198214012989	Integrase core domain; Region: rve; pfam00665
198214012990	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214012991	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
198214012992	transposase/IS protein; Provisional; Region: PRK09183
198214012993	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214012994	Walker A motif; other site
198214012995	ATP binding site [chemical binding]; other site
198214012996	Walker B motif; other site
198214012997	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214012998	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
198214012999	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
198214013000	Magnesium ion binding site [ion binding]; other site
198214013001	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
198214013002	ParB-like nuclease domain; Region: ParB; smart00470
198214013003	ParB family; Region: ParB; pfam08775
198214013004	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214013005	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214013006	Similar to Shigella flexneri putative reverse transcriptase  ref: NP_085197.1 (405 aa). BLAST with identity of 97% in 405 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214013007	HTH-like domain; Region: HTH_21; pfam13276
198214013008	Integrase core domain; Region: rve; pfam00665
198214013009	Integrase core domain; Region: rve_3; pfam13683
198214013010	Transposase; Region: HTH_Tnp_1; cl17663
198214013011	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013012	Integrase core domain; Region: rve; pfam00665
198214013013	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214013014	Putative transposase; Region: Y2_Tnp; pfam04986
198214013015	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013016	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214013017	Helix-turn-helix domain; Region: HTH_28; pfam13518
198214013018	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214013019	Walker A motif; other site
198214013020	ATP binding site [chemical binding]; other site
198214013021	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
198214013022	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214013023	Integrase core domain; Region: rve_3; pfam13683
198214013024	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214013025	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214013026	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214013027	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214013028	Similar to Shigella flexneri putative transposase for IS110  ref: NP_085282.1 (398 aa). BLAST with identity of 98% in 398 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214013029	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
198214013030	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214013031	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214013032	Transposase; Region: HTH_Tnp_1; cl17663
198214013033	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013034	HTH-like domain; Region: HTH_21; pfam13276
198214013035	Integrase core domain; Region: rve; pfam00665
198214013036	Integrase core domain; Region: rve_3; pfam13683
198214013037	putative transposase OrfB; Reviewed; Region: PHA02517
198214013038	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013039	Transposase; Region: HTH_Tnp_1; pfam01527
198214013040	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
198214013041	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4453
198214013042	DRE-TIM metallolyase superfamily; Region: DRE_TIM_metallolyase; cl18962
198214013043	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214013044	Putative transposase; Region: Y2_Tnp; pfam04986
198214013045	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293
198214013046	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
198214013047	Shigella flexneri OspC protein; Region: Shigella_OspC; pfam06128
198214013048	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214013049	Transposase; Region: HTH_Tnp_1; cl17663
198214013050	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013051	HTH-like domain; Region: HTH_21; pfam13276
198214013052	Integrase core domain; Region: rve; pfam00665
198214013053	Integrase core domain; Region: rve_3; pfam13683
198214013054	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013055	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214013056	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214013057	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
198214013058	Walker A motif; other site
198214013059	ATP binding site [chemical binding]; other site
198214013060	Walker B motif; other site
198214013061	Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018
198214013062	Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395
198214013063	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343
198214013064	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214013065	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214013066	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214013067	Putative transposase; Region: Y2_Tnp; pfam04986
198214013068	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
198214013069	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293
198214013070	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214013071	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
198214013072	Homeodomain-like domain; Region: HTH_23; pfam13384
198214013073	Winged helix-turn helix; Region: HTH_29; pfam13551
198214013074	Homeodomain-like domain; Region: HTH_32; pfam13565
198214013075	DDE superfamily endonuclease; Region: DDE_3; pfam13358
198214013076	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214013077	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214013078	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214013079	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214013080	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214013081	Leucine Rich repeats (2 copies); Region: LRR_4; pfam12799
198214013082	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214013083	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214013084	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
198214013085	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214013086	Transposase; Region: HTH_Tnp_1; cl17663
198214013087	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013088	HTH-like domain; Region: HTH_21; pfam13276
198214013089	Integrase core domain; Region: rve; pfam00665
198214013090	Integrase core domain; Region: rve_3; pfam13683
198214013091	Sugar phosphate permease [Carbohydrate transport and metabolism]; Region: UhpC; COG2271
198214013092	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
198214013093	putative substrate translocation pore; other site
198214013094	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
198214013095	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214013096	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl18944
198214013097	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013098	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214013099	HTH-like domain; Region: HTH_21; pfam13276
198214013100	Integrase core domain; Region: rve; pfam00665
198214013101	Integrase core domain; Region: rve_3; pfam13683
198214013102	Transposase; Region: HTH_Tnp_1; cl17663
198214013103	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013104	transposase/IS protein; Provisional; Region: PRK09183
198214013105	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
198214013106	Walker A motif; other site
198214013107	ATP binding site [chemical binding]; other site
198214013108	Walker B motif; other site
198214013109	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214013110	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214013111	Putative transposase; Region: Y2_Tnp; pfam04986
198214013112	ShET2 enterotoxin, N-terminal region; Region: Toxin_15; pfam07906
198214013113	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
198214013114	membrane-bound complex binding site; other site
198214013115	hinge residues; other site
198214013116	Shigella flexneri OspC protein; Region: Shigella_OspC; pfam06128
198214013117	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
198214013118	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214013119	Transposase DDE domain; Region: DDE_Tnp_1; pfam01609
198214013120	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
198214013121	AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis...; Region: AE_Prim_S_like; cl01287
198214013122	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293
198214013123	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
198214013124	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
198214013125	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214013126	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214013127	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214013128	Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8; Region: RNase_H_like; cl14782
198214013129	Similar to Shigella flexneri orf, conserved hypothetical protein ref: NP_085259.1 (212 aa). BLAST with identity of 99% in 211 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214013130	IS2 transposase TnpB; Reviewed; Region: PRK09409
198214013131	HTH-like domain; Region: HTH_21; pfam13276
198214013132	Integrase core domain; Region: rve; pfam00665
198214013133	Integrase core domain; Region: rve_3; pfam13683
198214013134	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214013135	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013136	putative transposase OrfB; Reviewed; Region: PHA02517
198214013137	HTH-like domain; Region: HTH_21; pfam13276
198214013138	Integrase core domain; Region: rve; pfam00665
198214013139	Integrase core domain; Region: rve_3; pfam13683
198214013140	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013141	Transposase; Region: HTH_Tnp_1; pfam01527
198214013142	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
198214013143	Coenzyme A binding pocket [chemical binding]; other site
198214013144	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4453
198214013145	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214013146	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214013147	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214013148	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013149	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214013150	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214013151	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214013152	Homeodomain-like domain; Region: HTH_23; pfam13384
198214013153	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013154	Transposase; Region: HTH_Tnp_1; pfam01527
198214013155	Shigella flexneri OspC protein; Region: Shigella_OspC; pfam06128
198214013156	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013157	Transposase; Region: HTH_Tnp_1; pfam01527
198214013158	HTH-like domain; Region: HTH_21; pfam13276
198214013159	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
198214013160	Integrase core domain; Region: rve; pfam00665
198214013161	Integrase core domain; Region: rve_3; pfam13683
198214013162	Integrase core domain; Region: rve; pfam00665
198214013163	Integrase core domain; Region: rve_2; pfam13333
198214013164	Transposase Tn5 dimerization domain; Region: Dimer_Tnp_Tn5; pfam02281
198214013165	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214013166	Y-family of DNA polymerases; Region: PolY; cl12025
198214013167	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214013168	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214013169	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG4584
198214013170	Helix-turn-helix domain of Hin and related proteins; Region: HTH_Hin_like; cl17393
198214013171	DNA-binding interface [nucleotide binding]; DNA binding site
198214013172	Integrase core domain; Region: rve; pfam00665
198214013173	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
198214013174	ParB-like nuclease domain; Region: ParB; smart00470
198214013175	ParB family; Region: ParB; pfam08775
198214013176	Phosphopantetheine attachment site; Region: PP-binding; cl09936
198214013177	Salmonella invasion protein A; Region: SipA; cl19731
198214013178	Invasion plasmid antigen IpaD; Region: IpaD; cl05827
198214013179	pathogenicity island 1 effector protein SipC; Provisional; Region: PRK15373
198214013180	pathogenicity island 1 effector protein SipB; Provisional; Region: PRK15374
198214013181	Secretion system effector C (SseC) like family; Region: SseC; pfam04888
198214013182	type III secretion low calcium response chaperone LcrH/SycD; Region: LcrH_SycD; TIGR02552
198214013183	Tetratricopeptide repeat; Region: TPR_3; pfam07720
198214013184	Tetratricopeptide repeat; Region: TPR_3; pfam07720
198214013185	IpaB/EvcA family; Region: IpaB_EvcA; pfam03278
198214013186	chaperone protein SicP; Provisional; Region: PRK15329
198214013187	Enterobacterial virulence protein IpgD; Region: IpgD; cl19613
198214013188	type III secretion chaperone protein SigE; Provisional; Region: PRK15202
198214013189	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
198214013190	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
198214013191	N-acetyl-D-glucosamine binding site [chemical binding]; other site
198214013192	catalytic residue [active]
198214013193	Type III secretion system protein PrgH-EprH (PrgH); Region: PrgH; pfam09480
198214013194	Type III secretion needle MxiH like; Region: MxiH; cl09641
198214013195	type III secretion system needle complex protein PrgJ; Provisional; Region: PRK15325
198214013196	type III secretion apparatus lipoprotein, YscJ/HrcJ family; Region: III_secr_YscJ; TIGR02544
198214013197	Bacterial type III secretion apparatus protein (OrgA_MxiK); Region: OrgA_MxiK; pfam09482
198214013198	invasion protein OrgB; Provisional; Region: PRK15322
198214013199	Pilot protein MxiM; Region: MxiM; pfam11441
198214013200	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
198214013201	helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342
198214013202	type III secretion system outer membrane pore InvG; Provisional; Region: PRK15339
198214013203	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
198214013204	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
198214013205	type III secretion system regulator InvE; Provisional; Region: PRK15338
198214013206	HrpJ-like domain; Region: HrpJ; pfam07201
198214013207	type III secretion system protein InvA; Provisional; Region: PRK15337
198214013208	Invasion protein B family; Region: Invas_SpaK; pfam03519
198214013209	ATP synthase SpaL; Validated; Region: PRK08149
198214013210	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
198214013211	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
198214013212	Walker A motif; other site
198214013213	ATP binding site [chemical binding]; other site
198214013214	Walker B motif; other site
198214013215	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
198214013216	type III secretion system protein SpaP; Provisional; Region: spaP; PRK12796
198214013217	type III secretion protein, HrpO family; Region: fliQ_rel_III; TIGR01403
198214013218	type III secretion protein SpaR/YscT/HrcT; Region: fliR_like_III; TIGR01401
198214013219	type III secretion system protein SpaS; Validated; Region: PRK08156
198214013220	HTH-like domain; Region: HTH_21; pfam13276
198214013221	Integrase core domain; Region: rve; pfam00665
198214013222	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013223	Transposase; Region: HTH_Tnp_1; pfam01527
198214013224	Integrase core domain; Region: rve_3; pfam13683
198214013225	Similar to Shigella flexneri IS1294 transposase ref: NP_085231.1 (399 aa). BLAST with identity of 98% in 286 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct.
198214013226	HTH-like domain; Region: HTH_21; pfam13276
198214013227	Transposase; Region: HTH_Tnp_1; cl17663
198214013228	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3464
198214013229	Transposase; Region: DDE_Tnp_ISL3; pfam01610
198214013230	Transposase; Region: HTH_Tnp_1; cl17663
198214013231	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013232	HTH-like domain; Region: HTH_21; pfam13276
198214013233	Integrase core domain; Region: rve; pfam00665
198214013234	Integrase core domain; Region: rve_3; pfam13683
198214013235	Transposase; Region: DDE_Tnp_ISL3; pfam01610
198214013236	Putative transposase; Region: Y2_Tnp; pfam04986
198214013237	RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons; Region: RT_like; cl02808
198214013238	nucleic acid binding site [nucleotide binding]; other site
198214013239	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
198214013240	HTH-like domain; Region: HTH_21; pfam13276
198214013241	Transposase; Region: HTH_Tnp_1; cl17663
198214013242	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013243	EspG protein; Region: EspG; pfam06872
198214013244	Autotransporter-associated beta strand repeat; Region: Autotrns_rpt; pfam12951
198214013245	Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344
198214013246	outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414
198214013247	Autotransporter beta-domain; Region: Autotransporter; pfam03797
198214013248	Transposase; Region: HTH_Tnp_1; cl17663
198214013249	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013250	HTH-like domain; Region: HTH_21; pfam13276
198214013251	Integrase core domain; Region: rve; pfam00665
198214013252	Integrase core domain; Region: rve_3; pfam13683
198214013253	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed; Region: ushA; PRK09558
198214013254	Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain; Region: MPP_UshA_N; cd07405
198214013255	active site
198214013256	metal binding site [ion binding]; metal-binding site
198214013257	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
198214013258	Group II intron, maturase-specific domain; Region: GIIM; pfam08388
198214013259	Retron-type reverse transcriptase [DNA replication, recombination, and repair]; Region: COG3344
198214013260	RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable...; Region: RT_G2_intron; cd01651
198214013261	putative active site [active]
198214013262	putative NTP binding site [chemical binding]; other site
198214013263	putative nucleic acid binding site [nucleotide binding]; other site
198214013264	Integrase core domain; Region: rve; pfam00665
198214013265	PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains...; Region: PAP2_acid_phosphatase; cd03397
198214013266	active site
198214013267	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
198214013268	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293
198214013269	Transposase DDE domain; Region: DDE_Tnp_1_2; pfam13586
198214013270	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3293
198214013271	Putative transposase of IS4/5 family (DUF4096); Region: DUF4096; pfam13340
198214013272	RelB antitoxin; Region: RelB; cl01171
198214013273	Plasmid stability protein; Region: Plasmid_stab_B; pfam10784
198214013274	Plasmid segregation protein ParM and similar proteins; Region: ParM_like; cd10227
198214013275	Mg binding site [ion binding]; other site
198214013276	nucleotide binding site [chemical binding]; other site
198214013277	putative protofilament interface [polypeptide binding]; other site
198214013278	Protein of unknown function (DUF1281); Region: DUF1281; pfam06924
198214013279	Protein Kinases, catalytic domain; Region: PKc_like; cl09925
198214013280	putative methylase; Provisional; Region: PRK13699
198214013281	Protein of unknown function (DUF1380); Region: DUF1380; pfam07128
198214013282	Protein of unknown function (DUF1380); Region: DUF1380; pfam07128
198214013283	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3547
198214013284	Transposase; Region: DEDD_Tnp_IS110; pfam01548
198214013285	Transposase IS116/IS110/IS902 family; Region: Transposase_20; pfam02371
198214013286	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214013287	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214013288	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214013289	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013290	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214013291	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214013292	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214013293	Homeodomain-like domain; Region: HTH_23; pfam13384
198214013294	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013295	Transposase; Region: HTH_Tnp_1; pfam01527
198214013296	HTH-like domain; Region: HTH_21; pfam13276
198214013297	Integrase core domain; Region: rve; pfam00665
198214013298	IS2 repressor TnpA; Reviewed; Region: PRK09413
198214013299	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013300	Papain fold toxin 1; Region: Tox-PL; pfam15644
198214013301	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3677
198214013302	InsA N-terminal domain; Region: Zn_Tnp_IS1; pfam03811
198214013303	InsA C-terminal domain; Region: HTH_Tnp_IS1; pfam12759
198214013304	Homeodomain-like domain; Region: HTH_23; pfam13384
198214013305	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013306	Transposase; Region: HTH_Tnp_1; pfam01527
198214013307	IS66 Orf2 like protein; Region: TnpB_IS66; pfam05717
198214013308	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214013309	Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007
198214013310	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3436
198214013311	zinc-finger binding domain of transposase IS66; Region: zf-IS66; pfam13005
198214013312	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013313	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214013314	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl18944
198214013315	Putative peptidoglycan binding domain; Region: PG_binding_1; pfam01471
198214013316	Sugar phosphate permease [Carbohydrate transport and metabolism]; Region: UhpC; COG2271
198214013317	Predicted transcriptional regulator [Transcription]; Region: COG3905
198214013318	Plasmid stabilisation system protein; Region: Plasmid_stabil; pfam05016
198214013319	DNA polymerase III chi subunit, HolC; Region: DNA_pol3_chi; cl01106
198214013320	IS1 transposase; Region: DDE_Tnp_IS1; cl00721
198214013321	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013322	Transposase IS66 family; Region: DDE_Tnp_IS66; pfam03050
198214013323	IS66 C-terminal element; Region: DDE_Tnp_IS66_C; pfam13817
198214013324	plasmid maintenance protein CcdA; Provisional; Region: PRK13710
198214013325	plasmid maintenance protein CcdB; Provisional; Region: PRK13708
198214013326	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214013327	E3 ubiquitin-protein ligase SlrP; Provisional; Region: PRK15370
198214013328	Leucine-rich repeats, bacterial type; Region: LRR_BAC; smart00364
198214013329	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214013330	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
198214013331	active site
198214013332	ATP binding site [chemical binding]; other site
198214013333	Similar to Shigella flexneri orf, conserved hypothetical protein ref: NP_085397.1 (439 aa). BLAST with identity of 77% in 438 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214013334	Transposase; Region: HTH_Tnp_1; cl17663
198214013335	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013336	HTH-like domain; Region: HTH_21; pfam13276
198214013337	Integrase core domain; Region: rve; pfam00665
198214013338	Integrase core domain; Region: rve_3; pfam13683
198214013339	putative transposase OrfB; Reviewed; Region: PHA02517
198214013340	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
198214013341	UvrD-like helicase C-terminal domain; Region: UvrD_C_2; cl19402
198214013342	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
198214013343	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
198214013344	Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins; Region: CE4_Ecf1_like_5s; cd10969
198214013345	putative active site [active]
198214013346	putative metal binding site [ion binding]; other site
198214013347	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
198214013348	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
198214013349	Protein of unknown function (DUF535); Region: DUF535; pfam04393
198214013350	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
198214013351	putative acyl-acceptor binding pocket; other site
198214013352	Winged helix-turn helix; Region: HTH_29; pfam13551
198214013353	Homeodomain-like domain; Region: HTH_23; pfam13384
198214013354	Homeodomain-like domain; Region: HTH_32; pfam13565
198214013355	DDE superfamily endonuclease; Region: DDE_3; pfam13358
198214013356	Similar to Shigella flexneri orf, conserved hypothetical protein ref: NP_085323.1 (272 aa). BLAST with identity of 100% in 272 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
198214013357	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013358	Transposase; Region: HTH_Tnp_1; pfam01527
198214013359	conjugal transfer protein TraD; Provisional; Region: PRK13700
198214013360	PIN domain of ribonucleases (toxins), VapC and FitB, of prokaryotic toxin/antitoxin operons, Pyrococcus horikoshii protein PH0500, and other similar bacterial and archaeal homologs; Region: PIN_VapC-FitB; cd09881
198214013361	oligomeric interface; other site
198214013362	putative active site [active]
198214013363	homodimer interface [polypeptide binding]; other site
198214013364	Virulence-associated protein and related proteins [Function unknown]; Region: VagC; COG4456
198214013365	TrwC relaxase; Region: TrwC; cl19905
198214013366	TrwC relaxase; Region: TrwC; cl19905
198214013367	conjugal transfer nickase/helicase TraI; Provisional; Region: PRK14712
198214013368	AAA domain; Region: AAA_30; pfam13604
198214013369	DNA helicase TraI; Region: TraI; pfam07057
198214013370	conjugal transfer pilus acetylation protein TraX; Provisional; Region: PRK13706
198214013371	conjugal transfer fertility inhibition protein FinO; Provisional; Region: PRK13754
198214013372	Fertility inhibition protein N terminal; Region: FinO_N; pfam12602
198214013373	FinO bacterial conjugation repressor domain;  the basic protein FinO is part of the the two component FinOP system which is responsible for repressing bacterial conjugation; the FinOP system represses the transfer (tra) operon of the F-plasmid which...; Region: FinO_conjug_rep; cd00236
198214013374	putative kissing complex interaction region; other site
198214013375	putative RNA binding sites [nucleotide binding]; other site
198214013376	Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cd00175
198214013377	Catalytic site; other site
198214013378	putative transposase OrfB; Reviewed; Region: PHA02517
198214013379	HTH-like domain; Region: HTH_21; pfam13276
198214013380	Integrase core domain; Region: rve; pfam00665
198214013381	Integrase core domain; Region: rve_3; pfam13683
198214013382	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013383	Transposase; Region: HTH_Tnp_1; pfam01527
198214013384	Staphylococcal nuclease homologue; Region: SNase; cl00140
198214013385	Protein of unknown function (DUF2726); Region: DUF2726; pfam10881
198214013386	replication protein; Provisional; Region: PRK13702
198214013387	leader peptide RepL; Provisional; Region: PRK13716
198214013388	replication protein; Provisional; Region: PRK13750
198214013389	Transposase zinc-binding domain; Region: Zn_Tnp_IS91; pfam14319
198214013390	Putative transposase; Region: Y2_Tnp; pfam04986
198214013391	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG3328
198214013392	Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468
198214013393	Leucine-rich repeat (LRR) protein [Function unknown]; Region: COG4886
198214013394	C-terminal novel E3 ligase, LRR-interacting; Region: NEL; pfam14496
198214013395	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013396	Transposase; Region: HTH_Tnp_1; pfam01527
198214013397	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: COG2963
198214013398	Transposase; Region: HTH_Tnp_1; cl17663
198214013399	putative transposase OrfB; Reviewed; Region: PHA02517
198214013400	HTH-like domain; Region: HTH_21; pfam13276
198214013401	Integrase core domain; Region: rve; pfam00665
198214013402	Integrase core domain; Region: rve_3; pfam13683
198214013403	Transposase and inactivated derivatives [DNA replication, recombination, and repair]; Region: Tra5; COG2801
198214013404	Integrase core domain; Region: rve_3; cl15866
198214013405	Omptin family; Region: Omptin; pfam01278
198214013406	EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2).  The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl00290