-- dump date 20240506_010004 -- class Genbank::Contig -- table contig_comment -- id comment NC_019892.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003364.1.REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: RussiaREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlandsREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bogREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26CREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003364.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019893.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003365.1.REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: RussiaREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlandsREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bogREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26CREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003365.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019894.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003366.1.REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: RussiaREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlandsREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bogREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26CREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003366.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_019895.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP003367.1.REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: RussiaREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlandsREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bogREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shapedREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26CREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP003367.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4089469 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Singulisphaera acidiphila DSM 18658 collection_date :: 2008 lat_lon :: 58.233 36.2 depth :: Missing alt_elev :: Missing country :: Russia environment :: Acidic wetlands num_replicons :: 4 ref_biomaterial :: DSM 18658, ATCC BAA-1392, VKM B-2454 biotic_relationship :: Missing trophic_level :: Missing rel_to_oxygen :: Microaerophilic isol_growth_condt :: 18450711 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05834 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Sphagnum peat sampled from the bog Obukhovskoe (acidic wetland) Cell Shape :: Sphere-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 20-26C pH :: 5 - 6.2 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/08/2023 01:50:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 7,327 CDSs (total) :: 7,228 Genes (coding) :: 7,163 CDSs (with protein) :: 7,163 Genes (RNA) :: 99 rRNAs :: 8, 8, 8 (5S, 16S, 23S) complete rRNAs :: 8, 8, 8 (5S, 16S, 23S) tRNAs :: 71 ncRNAs :: 4 Pseudo Genes (total) :: 65 CDSs (without protein) :: 65 Pseudo Genes (ambiguous residues) :: 0 of 65 Pseudo Genes (frameshifted) :: 21 of 65 Pseudo Genes (incomplete) :: 46 of 65 Pseudo Genes (internal stop) :: 10 of 65 Pseudo Genes (multiple problems) :: 11 of 65 CRISPR Arrays :: 5 ##Genome-Annotation-Data-END## COMPLETENESS: full length.