-- dump date 20240506_001836 -- class Genbank::Contig -- table contig_comment -- id comment NC_013523.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001823.1.REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSMREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, ArachneREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludgeREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, GermanyREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: GermanyREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobeREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55CREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: SludgeREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001823.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_013524.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001824.1.REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSMREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, ArachneREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludgeREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, GermanyREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: GermanyREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobeREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55CREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: SludgeREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001824.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082797 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Sphaerobacter thermophilus 4ac11, DSM 20745 Culture Collection ID :: DSM 20745, ATCC 49802 GOLD Stamp ID :: Gi02236 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler version 1.1.02.15, Arachne Sequencing Depth :: 7.4x Sanger; 28.5x 454 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: thermal treated municipal sewage sludge from Muenchen-Grosslappen, Germany Isolation Country :: Germany Latitude :: 48.139 Longitude :: 11.58 Oxygen Requirement :: Obligate aerobe Cell Shape :: Rod-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 55C pH :: 8.5 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Sludge ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:22:22 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,540 CDSs (total) :: 3,480 Genes (coding) :: 3,463 CDSs (with protein) :: 3,463 Genes (RNA) :: 60 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 4 Pseudo Genes (total) :: 17 CDSs (without protein) :: 17 Pseudo Genes (ambiguous residues) :: 0 of 17 Pseudo Genes (frameshifted) :: 1 of 17 Pseudo Genes (incomplete) :: 15 of 17 Pseudo Genes (internal stop) :: 1 of 17 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.