-- dump date   	20140620_073537
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_184912.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_184913.1	binds the polymerase to DNA and acts as a sliding clamp
YP_184915.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_184916.1	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059
YP_184917.1	identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063
YP_184918.1	identified by similarity to EGAD:21908; match to protein family HMM PF01256
YP_184919.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_184920.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_184921.1	identified by match to protein family HMM PF03591
YP_184922.1	identified by similarity to GB:AAO03607.1; match to protein family HMM PF06063
YP_184923.1	identified by match to protein family HMM PF00561
YP_184925.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_184926.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_184927.1	identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665
YP_184929.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_184930.1	identified by similarity to GP:5114230; similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_184931.1	identified by similarity to GP:5114231; similarity to OMNI:SA0020; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_184932.1	identified by similarity to GP:1064812; match to protein family HMM PF07435
YP_184934.1	identified by match to protein family HMM PF00753
YP_184935.1	identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167
YP_184939.1	identified by similarity to SP:P19380; match to protein family HMM PF00665
YP_184940.1	identified by similarity to GP:9937361
YP_184942.1	identified by similarity to EGAD:9350; similarity to EGAD:9938; match to protein family HMM PF03009
YP_184943.1	identified by match to protein family HMM PF01575
YP_184944.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223
YP_184945.1	identified by similarity to EGAD:24355; match to protein family HMM PF05569
YP_184947.1	identified by match to protein family HMM PF01609
YP_184948.1	identified by similarity to GB:AAO03627.1
YP_184949.1	identified by match to protein family HMM PF06124
YP_184951.1	identified by similarity to GB:AAO03652.1; match to protein family HMM PF06106
YP_184952.1	identified by match to protein family HMM PF00239; match to protein family HMM PF07508
YP_184953.1	identified by match to protein family HMM PF06048
YP_184954.1	identified by match to protein family HMM PF07205
YP_184956.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00753
YP_184957.1	identified by match to protein family HMM PF00581; match to protein family HMM PF01206
YP_184958.1	identified by match to protein family HMM PF02583
YP_184959.1	identified by match to protein family HMM PF01925
YP_184960.1	identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_184962.1	identified by match to protein family HMM PF00534
YP_184966.1	identified by match to protein family HMM PF01925
YP_184967.1	identified by match to protein family HMM PF02583
YP_184968.1	identified by match to protein family HMM PF00581; match to protein family HMM PF01206
YP_184969.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00753
YP_184971.1	identified by similarity to OMNI:NTL01BH0416
YP_184972.1	identified by similarity to EGAD:108206; match to protein family HMM PF01207
YP_184974.1	identified by match to protein family HMM PF04993
YP_184975.1	identified by match to protein family HMM PF07690
YP_184976.1	identified by similarity to EGAD:107983
YP_184977.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_184979.1	identified by match to protein family HMM PF00126
YP_184983.1	identified by similarity to EGAD:20792; match to protein family HMM PF00388
YP_184984.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_184985.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_184987.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_184988.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_184989.1	identified by match to protein family HMM PF00165
YP_184990.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_184991.1	identified by match to protein family HMM PF07690
YP_184993.1	identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704
YP_184994.1	in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_184995.1	identified by match to protein family HMM PF00892
YP_184996.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_184998.1	identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_184999.1	identified by similarity to SP:P02976; match to protein family HMM PF00746; match to protein family HMM PF01476; match to protein family HMM PF02216; match to protein family HMM PF03373; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_185000.1	identified by similarity to OMNI:SA0096; match to protein family HMM TIGR01889
YP_185001.1	identified by match to protein family HMM PF01032
YP_185002.1	identified by similarity to EGAD:9723; match to protein family HMM PF01032
YP_185003.1	identified by similarity to EGAD:22102; match to protein family HMM PF01497
YP_185004.1	identified by similarity to EGAD:101781; match to protein family HMM PF00291
YP_185005.1	identified by match to protein family HMM PF02423
YP_185006.1	identified by similarity to EGAD:97400; match to protein family HMM PF04183
YP_185007.1	identified by similarity to EGAD:9939; match to protein family HMM PF00083; match to protein family HMM PF07690
YP_185008.1	identified by match to protein family HMM PF04183
YP_185009.1	identified by match to protein family HMM PF04183
YP_185010.1	identified by match to protein family HMM PF03328
YP_185011.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_185015.1	identified by match to protein family HMM PF00106
YP_185017.1	identified by match to protein family HMM PF01370
YP_185018.1	identified by match to protein family HMM PF02397
YP_185019.1	identified by match to protein family HMM PF00534
YP_185021.1	identified by match to protein family HMM PF01943
YP_185022.1	identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777
YP_185023.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167
YP_185024.1	identified by similarity to EGAD:37606; match to protein family HMM PF00392
YP_185025.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_185026.1	identified by match to protein family HMM PF07690
YP_185027.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_185028.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_185029.1	identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_185030.1	identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_185031.1	identified by similarity to EGAD:19702; match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_185032.1	identified by similarity to EGAD:8376; match to protein family HMM TIGR01098
YP_185033.1	identified by similarity to GB:AAO05899.1
YP_185034.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_185035.1	identified by similarity to SP:P17547; match to protein family HMM PF00465
YP_185036.1	identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006
YP_185037.1	identified by match to protein family HMM TIGR01007
YP_185038.1	identified by match to protein family HMM PF02811
YP_185039.1	identified by match to protein family HMM PF02719
YP_185040.1	identified by match to protein family HMM PF02719
YP_185042.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_185043.1	identified by match to protein family HMM PF00132
YP_185045.1	identified by match to protein family HMM PF04932
YP_185047.1	identified by match to protein family HMM PF00534
YP_185048.1	identified by match to protein family HMM PF02397
YP_185050.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721
YP_185051.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_185052.1	iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source
YP_185053.1	identified by match to protein family HMM PF04304
YP_185054.1	identified by similarity to EGAD:15875; match to protein family HMM PF00171
YP_185055.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_185058.1	identified by match to protein family HMM PF00528
YP_185059.1	identified by similarity to EGAD:175821
YP_185061.1	Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate
YP_185062.1	identified by similarity to EGAD:9179; match to protein family HMM PF07690
YP_185063.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746
YP_185064.1	identified by match to protein family HMM PF01648
YP_185065.1	identified by match to protein family HMM PF07274
YP_185066.1	identified by similarity to EGAD:15079; match to protein family HMM PF00696; match to protein family HMM TIGR00761
YP_185067.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_185068.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_185069.1	identified by similarity to SP:P38021; match to protein family HMM PF00202; match to protein family HMM TIGR01885
YP_185070.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_185071.1	identified by similarity to GP:1736514; match to protein family HMM PF00857
YP_185072.1	identified by similarity to EGAD:20234; match to protein family HMM PF00205; match to protein family HMM PF02776
YP_185074.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002
YP_185075.1	identified by match to protein family HMM PF05913
YP_185076.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_185077.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_185078.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_185079.1	identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348
YP_185083.1	identified by match to protein family HMM PF00005
YP_185084.1	identified by match to protein family HMM PF00528
YP_185085.1	identified by match to protein family HMM PF00528
YP_185087.1	identified by similarity to EGAD:45768; match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_185088.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185089.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_185090.1	identified by match to protein family HMM PF01551
YP_185091.1	identified by similarity to EGAD:108619; match to protein family HMM PF00005; match to protein family HMM PF03459
YP_185092.1	identified by similarity to EGAD:7280; match to protein family HMM PF01547
YP_185093.1	identified by similarity to EGAD:6251; match to protein family HMM PF00528; match to protein family HMM PF05154
YP_185094.1	identified by match to protein family HMM PF00528
YP_185095.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_185096.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_185097.1	identified by similarity to GP:10173865; match to protein family HMM PF07582
YP_185098.1	identified by similarity to EGAD:28959; match to protein family HMM PF04140
YP_185099.1	cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate
YP_185100.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00165
YP_185101.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_185103.1	identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255
YP_185104.1	identified by similarity to SP:O68575; match to protein family HMM PF04055
YP_185106.1	identified by match to protein family HMM PF03009
YP_185108.1	identified by similarity to EGAD:7465; match to protein family HMM PF04022
YP_185110.1	identified by similarity to EGAD:174567; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_185111.1	identified by similarity to OMNI:NTL01BH3492; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_185112.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_185113.1	identified by similarity to EGAD:7530; match to protein family HMM PF00501
YP_185114.1	identified by match to protein family HMM PF01144
YP_185116.1	identified by match to protein family HMM PF00496
YP_185117.1	identified by similarity to SP:P76243; match to protein family HMM PF04343
YP_185119.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00970
YP_185120.1	identified by similarity to EGAD:7030; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771
YP_185122.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826
YP_185123.1	identified by match to protein family HMM PF01156
YP_185124.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874
YP_185125.1	identified by match to protein family HMM PF00359
YP_185126.1	identified by match to protein family HMM PF02302
YP_185128.1	identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827
YP_185129.1	identified by similarity to SP:Q06004; similarity to OMNI:NTL01BH0190; match to protein family HMM PF00107
YP_185131.1	identified by match to protein family HMM PF00107
YP_185132.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_185133.1	identified by match to protein family HMM PF00107
YP_185134.1	identified by match to protein family HMM PF04464
YP_185135.1	identified by match to protein family HMM PF04464
YP_185136.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_185137.1	identified by match to protein family HMM PF00107
YP_185138.1	identified by match to protein family HMM PF04464
YP_185139.1	identified by match to protein family HMM PF00535
YP_185140.1	involved in peptidoglycan cross-linking
YP_185141.1	identified by similarity to EGAD:42940; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694
YP_185142.1	identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397
YP_185143.1	negatively regulates murein hydrolase activity
YP_185144.1	in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases
YP_185145.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_185146.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_185147.1	identified by similarity to EGAD:36677; match to protein family HMM PF00232
YP_185149.1	identified by similarity to EGAD:29131; match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_185150.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_185151.1	identified by match to protein family HMM PF06800
YP_185152.1	identified by similarity to SP:P25551; match to protein family HMM PF00356; match to protein family HMM PF00532
YP_185156.1	identified by match to protein family HMM PF07690
YP_185157.1	identified by similarity to EGAD:17563; match to protein family HMM PF02275
YP_185158.1	identified by similarity to GP:2239274; match to protein family HMM PF01551
YP_185159.1	identified by match to protein family HMM PF00005
YP_185165.1	identified by match to protein family HMM PF05257
YP_185166.1	identified by match to protein family HMM PF06013
YP_185171.1	identified by similarity to EGAD:128572; match to protein family HMM PF01580
YP_185177.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185181.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185182.2	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185183.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185185.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185186.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185187.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185188.2	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185189.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185190.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185191.1	identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741
YP_185194.1	identified by match to protein family HMM PF01226
YP_185195.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_185196.1	identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533
YP_185197.1	identified by match to protein family HMM PF02687
YP_185198.1	identified by match to protein family HMM PF00005
YP_185199.1	identified by similarity to EGAD:33437
YP_185200.1	identified by match to protein family HMM PF00294
YP_185201.1	identified by match to protein family HMM PF04227
YP_185202.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_185203.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813
YP_185204.1	catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid
YP_185205.1	identified by match to protein family HMM PF00480
YP_185206.1	identified by similarity to EGAD:15022; match to protein family HMM PF01380
YP_185207.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_185208.1	identified by match to protein family HMM PF07670
YP_185209.1	identified by similarity to EGAD:17843; match to protein family HMM PF04650; match to protein family HMM TIGR01168
YP_185210.1	identified by similarity to EGAD:72831; match to protein family HMM PF00589
YP_185213.1	identified by similarity to GP:3341939; match to protein family HMM PF00717; match to protein family HMM PF01381
YP_185214.1	identified by similarity to GP:11127678
YP_185217.1	identified by similarity to GP:8918756; match to protein family HMM PF02498
YP_185221.1	identified by similarity to OMNI:NTL01SA1873
YP_185222.1	identified by similarity to OMNI:NTL01SA1872
YP_185224.1	identified by similarity to GP:5730267
YP_185225.1	identified by similarity to GP:3341945
YP_185226.1	identified by similarity to OMNI:NTL01SA1870; match to protein family HMM PF06900
YP_185228.1	identified by similarity to GP:3341947; match to protein family HMM PF06531
YP_185230.1	identified by similarity to GP:3282307; match to protein family HMM PF06378
YP_185231.1	identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_185232.1	identified by similarity to GP:8918766; match to protein family HMM PF06147
YP_185233.1	identified by similarity to GP:8918767; match to protein family HMM TIGR01446; match to protein family HMM TIGR01714
YP_185235.1	identified by similarity to EGAD:21924; match to protein family HMM PF03796
YP_185238.1	identified by match to protein family HMM PF05869; match to protein family HMM TIGR01712
YP_185239.1	identified by similarity to GP:8918440; match to protein family HMM PF06356
YP_185240.1	identified by similarity to GP:8918770
YP_185241.1	identified by similarity to GP:8918771; match to protein family HMM PF01381
YP_185242.1	identified by similarity to GP:12697847
YP_185243.1	identified by similarity to GP:12697848; match to protein family HMM PF06194
YP_185246.1	identified by similarity to GP:5001708; match to protein family HMM TIGR01671
YP_185247.1	identified by similarity to GP:8918774
YP_185248.1	identified by similarity to GP:8918447; match to protein family HMM PF06260
YP_185249.1	identified by similarity to SP:P33316; match to protein family HMM PF00692
YP_185250.1	identified by similarity to OMNI:NTL02SA0871; match to protein family HMM PF07129
YP_185253.1	identified by similarity to GP:12697854; match to protein family HMM PF06116
YP_185254.1	identified by similarity to GP:12697855; match to protein family HMM PF07438
YP_185255.1	identified by similarity to OMNI:SA0363
YP_185256.1	identified by match to protein family HMM TIGR01636
YP_185257.1	identified by match to protein family HMM PF01844
YP_185258.1	identified by match to protein family HMM PF05119
YP_185259.1	identified by similarity to GP:12697860; match to protein family HMM PF03354
YP_185260.1	identified by similarity to GP:4126611; match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_185261.1	identified by match to protein family HMM PF00574
YP_185262.1	identified by match to protein family HMM PF05065
YP_185263.1	identified by similarity to GP:13361058; match to protein family HMM TIGR01560
YP_185265.1	identified by similarity to GP:12697866
YP_185266.1	identified by similarity to OMNI:NTL01SA1839
YP_185267.1	identified by similarity to GP:12697868; match to protein family HMM PF04630; match to protein family HMM TIGR01603
YP_185268.1	identified by match to protein family HMM PF02368
YP_185271.1	identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760
YP_185272.1	identified by similarity to GP:12697873; match to protein family HMM PF06997
YP_185273.1	identified by similarity to GP:12697874; match to protein family HMM PF06605
YP_185275.1	identified by similarity to GP:8918471
YP_185276.1	identified by similarity to GP:8918472
YP_185277.1	identified by similarity to GP:12697878
YP_185278.1	identified by match to protein family HMM TIGR01669
YP_185279.1	identified by similarity to GP:8918803
YP_185280.1	identified by similarity to GP:3341931; match to protein family HMM PF04688; match to protein family HMM TIGR01592
YP_185281.1	identified by similarity to GP:12697881; match to protein family HMM PF01520; match to protein family HMM PF05257
YP_185282.1	identified by similarity to EGAD:17843
YP_185284.1	identified by match to protein family HMM PF00724
YP_185286.1	identified by match to protein family HMM PF00296
YP_185287.1	identified by match to protein family HMM PF01597
YP_185288.1	identified by match to protein family HMM PF01661
YP_185290.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_185292.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_185293.1	identified by match to protein family HMM PF02302
YP_185294.1	identified by match to protein family HMM PF00359
YP_185295.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874
YP_185296.1	identified by match to protein family HMM PF01047
YP_185297.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_185299.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881
YP_185300.1	identified by match to protein family HMM PF00903
YP_185301.1	identified by similarity to GP:9965112; match to protein family HMM PF00296
YP_185302.1	identified by match to protein family HMM PF03358
YP_185303.1	identified by match to protein family HMM PF03601
YP_185305.1	identified by match to protein family HMM PF00583
YP_185306.1	identified by match to protein family HMM PF04302
YP_185307.1	identified by similarity to EGAD:20441; match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413
YP_185309.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_185310.1	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411
YP_185312.1	identified by match to protein family HMM PF01381
YP_185314.1	identified by match to protein family HMM PF00005
YP_185317.1	identified by similarity to EGAD:16007; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_185318.1	identified by match to protein family HMM PF04199
YP_185319.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_185320.1	catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions
YP_185321.1	identified by match to protein family HMM PF01053
YP_185322.1	identified by match to protein family HMM PF01053
YP_185323.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_185324.1	identified by similarity to SP:P75783; match to protein family HMM PF00924
YP_185325.1	identified by similarity to GP:10176677; match to protein family HMM PF06107
YP_185326.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_185327.1	identified by similarity to GB:AAO06017.1
YP_185328.2	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_185329.1	identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_185330.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_185331.1	identified by similarity to GP:4894254
YP_185333.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_185334.1	identified by match to protein family HMM PF03413
YP_185335.1	identified by similarity to GB:AAO06012.1
YP_185336.1	identified by match to protein family HMM PF04226
YP_185337.1	identified by match to protein family HMM PF00300
YP_185341.1	identified by similarity to EGAD:30995; match to protein family HMM PF00070
YP_185342.1	identified by similarity to EGAD:37649; match to protein family HMM PF00578
YP_185343.1	identified by similarity to EGAD:18715; match to protein family HMM PF00881
YP_185344.1	identified by match to protein family HMM PF00375
YP_185345.1	identified by similarity to SP:Q8CQQ7
YP_185346.1	identified by similarity to GB:AAO05995.1
YP_185347.1	identified by similarity to GB:AAO05994.1
YP_185348.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_185349.1	identified by similarity to EGAD:30678; match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_185350.1	identified by similarity to SP:P21879; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302
YP_185351.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_185354.1	identified by match to protein family HMM PF01527
YP_185356.1	identified by match to protein family HMM PF06993
YP_185358.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185359.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185360.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185362.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185363.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185364.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185366.1	identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497
YP_185367.1	identified by match to protein family HMM PF01420
YP_185368.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_185369.1	identified by match to protein family HMM TIGR01168
YP_185371.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185372.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185373.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185374.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185375.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185376.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_185381.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_185382.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_185386.1	identified by match to protein family HMM PF01569
YP_185389.1	identified by match to protein family HMM PF00209
YP_185390.1	identified by similarity to EGAD:89450; match to protein family HMM PF00291
YP_185391.1	identified by match to protein family HMM PF01053
YP_185392.1	identified by match to protein family HMM PF00005
YP_185393.1	identified by match to protein family HMM PF00528
YP_185394.1	identified by match to protein family HMM PF03180
YP_185395.1	identified by match to protein family HMM PF01476; match to protein family HMM PF05257
YP_185396.1	identified by similarity to GB:AAO05959.1
YP_185397.1	identified by match to protein family HMM PF00293
YP_185398.1	identified by match to protein family HMM PF00583
YP_185401.1	identified by similarity to EGAD:6257; match to protein family HMM PF00126
YP_185402.1	identified by similarity to EGAD:109137; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898
YP_185403.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_185404.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992
YP_185405.1	identified by match to protein family HMM PF00128
YP_185406.1	identified by similarity to EGAD:37606; match to protein family HMM PF00392; match to protein family HMM PF07702
YP_185407.1	identified by match to protein family HMM PF00583
YP_185408.1	identified by similarity to SP:P09122; match to protein family HMM PF00004
YP_185409.1	identified by similarity to EGAD:19844; match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_185410.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_185411.1	identified by match to protein family HMM PF01276
YP_185412.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_185413.1	identified by similarity to GP:10172655; match to protein family HMM PF06153
YP_185414.1	identified by similarity to EGAD:13071
YP_185415.1	identified by match to protein family HMM PF04468
YP_185416.1	in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA
YP_185418.1	identified by match to protein family HMM PF01541
YP_185419.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_185421.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_185422.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_185423.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_185424.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_185425.1	identified by similarity to EGAD:13222; match to protein family HMM PF06257
YP_185426.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_185427.1	identified by similarity to EGAD:16043; match to protein family HMM PF00156; match to protein family HMM TIGR01743
YP_185428.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_185429.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_185431.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_185432.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_185433.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_185434.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_185435.1	identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_185436.1	identified by match to protein family HMM PF01943
YP_185437.1	identified by match to protein family HMM PF00590; match to protein family HMM PF03819
YP_185438.1	identified by match to protein family HMM PF01479
YP_185439.1	identified by similarity to EGAD:12437; match to protein family HMM PF04977
YP_185440.1	identified by similarity to SP:P80870; match to protein family HMM PF00575
YP_185441.1	identified by similarity to EGAD:18381; match to protein family HMM PF01171
YP_185442.1	identified by similarity to EGAD:18056; match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_185443.1	identified by similarity to EGAD:13183; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241
YP_185444.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_185445.1	identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_185446.1	identified by similarity to SP:O05701; match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_185447.1	identified by similarity to SP:P56740; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_185448.1	identified by similarity to EGAD:18680; match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_185450.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_185451.1	identified by match to protein family HMM PF00392
YP_185452.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_185453.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_185454.1	identified by similarity to EGAD:6216; match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_185455.1	identified by similarity to EGAD:23972; match to protein family HMM PF05848
YP_185456.1	identified by similarity to GP:7007431; match to protein family HMM PF02151
YP_185457.1	identified by match to protein family HMM PF00217
YP_185458.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_185459.1	identified by similarity to OMNI:NTL01BH0107; match to protein family HMM PF01850; match to protein family HMM PF01938
YP_185460.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_185461.1	identified by similarity to EGAD:98265; match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_185462.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_185463.1	identified by similarity to EGAD:108189; match to protein family HMM PF05948
YP_185464.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186
YP_185465.1	identified by similarity to EGAD:14028; match to protein family HMM PF05991
YP_185466.1	identified by similarity to OMNI:EF0049; match to protein family HMM PF04542
YP_185467.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_185468.1	identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922
YP_185469.1	binds directly to 23S ribosomal RNA
YP_185470.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_185471.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_185472.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_185473.1	identified by similarity to GP:10172736; match to protein family HMM PF05175
YP_185474.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_185475.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_185476.1	in Bacillus subtilis this non-essential protein associates with the ribosome
YP_185477.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_185478.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_185479.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_185480.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_185481.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_185482.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_185483.1	Hsp31 stabilizes early unfolding protein intermediates under severe heat stress
YP_185484.1	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate
YP_185485.1	identified by similarity to OMNI:NT01TA1215
YP_185486.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_185488.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_185489.1	identified by match to protein family HMM PF01712
YP_185490.1	identified by match to protein family HMM PF01712
YP_185491.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_185492.1	identified by similarity to GP:10281002; match to protein family HMM PF03358
YP_185493.1	identified by similarity to GP:3550592; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_185494.1	identified by similarity to GP:3550594; match to protein family HMM PF00746; match to protein family HMM PF02412; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_185495.1	identified by similarity to GP:3550596; match to protein family HMM PF00746; match to protein family HMM PF02412; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_185496.1	identified by match to protein family HMM PF00534
YP_185497.1	identified by match to protein family HMM PF00534
YP_185498.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_185499.1	identified by similarity to GP:10175943; match to protein family HMM PF02585
YP_185500.1	identified by similarity to GP:10175942
YP_185501.1	identified by similarity to EGAD:107403; match to protein family HMM PF01182
YP_185502.1	identified by similarity to EGAD:30794; match to protein family HMM PF00215
YP_185503.1	identified by match to protein family HMM PF01380
YP_185504.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_185505.1	identified by similarity to EGAD:8124; match to protein family HMM PF00083; match to protein family HMM PF07690
YP_185506.1	identified by match to protein family HMM PF00501
YP_185507.1	identified by similarity to EGAD:91218; similarity to EGAD:173607; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_185509.1	identified by similarity to GB:AAO03945.1
YP_185511.1	identified by similarity to EGAD:21177; match to protein family HMM TIGR00097
YP_185512.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_185513.1	identified by similarity to GB:AAO03949.1
YP_185514.1	identified by similarity to EGAD:17353; match to protein family HMM PF04241
YP_185515.1	identified by match to protein family HMM PF00324
YP_185516.1	identified by similarity to GP:10172694
YP_185517.1	identified by match to protein family HMM PF06738
YP_185518.1	identified by similarity to EGAD:20638; match to protein family HMM PF06778
YP_185519.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_185521.1	identified by similarity to GP:9937364; match to protein family HMM PF00288; match to protein family HMM TIGR00549
YP_185522.1	identified by similarity to GP:14246359; match to protein family HMM PF00288; match to protein family HMM TIGR01240
YP_185523.1	identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220
YP_185524.1	identified by similarity to GP:10176446
YP_185525.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852
YP_185526.1	identified by similarity to GP:4512355
YP_185528.1	identified by similarity to GP:11230708
YP_185529.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185530.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185531.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185532.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185533.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185534.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185535.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185536.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185537.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185538.1	identified by similarity to GP:10173594; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185539.1	identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218
YP_185540.1	identified by similarity to EGAD:30452; match to protein family HMM PF00248
YP_185541.1	identified by similarity to EGAD:107983
YP_185542.1	identified by match to protein family HMM PF01966
YP_185543.1	identified by similarity to EGAD:108331
YP_185544.1	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_185546.1	identified by similarity to EGAD:108312
YP_185547.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_185548.1	identified by match to protein family HMM PF00730
YP_185549.1	identified by match to protein family HMM PF01497
YP_185550.1	identified by match to protein family HMM PF01032
YP_185551.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_185552.1	identified by match to protein family HMM PF00561
YP_185553.1	identified by similarity to GB:AAO03984.1
YP_185554.1	identified by similarity to GB:AAO03985.1
YP_185555.1	identified by match to protein family HMM PF00561
YP_185556.1	identified by similarity to EGAD:42500; match to protein family HMM TIGR01889
YP_185558.1	identified by similarity to GB:AAO03989.1; match to protein family HMM PF04657
YP_185559.1	identified by similarity to GB:AAO03992.1
YP_185560.1	identified by similarity to GB:AAO03993.1
YP_185561.1	identified by similarity to EGAD:9824; match to protein family HMM PF00589
YP_185562.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185563.1	subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185564.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185565.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport
YP_185566.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_185567.1	subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185568.1	subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185569.1	identified by match to protein family HMM PF00999
YP_185570.1	identified by match to protein family HMM PF01297
YP_185571.1	identified by match to protein family HMM PF00950
YP_185572.1	identified by match to protein family HMM PF00005
YP_185573.1	identified by similarity to GP:1617434; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023
YP_185574.1	identified by similarity to GB:AAO04006.1
YP_185575.1	identified by similarity to EGAD:19699; match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_185576.1	with TagG is involved in the export of teichoic acids
YP_185577.1	identified by similarity to EGAD:30975; match to protein family HMM PF01061
YP_185578.1	identified by similarity to EGAD:16235; match to protein family HMM PF04464
YP_185579.1	identified by similarity to GP:1913906; match to protein family HMM PF00535
YP_185580.1	identified by similarity to EGAD:16695; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518
YP_185581.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768
YP_185582.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_185583.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662
YP_185585.1	identified by similarity to EGAD:108622; match to protein family HMM PF02588
YP_185586.1	identified by similarity to EGAD:37683; match to protein family HMM PF00005
YP_185587.1	identified by similarity to EGAD:23253; match to protein family HMM PF01032
YP_185588.1	identified by similarity to EGAD:37682; match to protein family HMM PF01032
YP_185589.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_185590.1	identified by similarity to OMNI:NTL01BH3400; match to protein family HMM PF02734; match to protein family HMM TIGR02365
YP_185591.1	identified by similarity to OMNI:NTL01LL0257; match to protein family HMM PF03610; match to protein family HMM TIGR02364
YP_185592.1	identified by similarity to OMNI:SA0710
YP_185593.1	identified by similarity to EGAD:107607; match to protein family HMM PF05525
YP_185596.1	identified by match to protein family HMM PF00583
YP_185597.1	identified by similarity to GB:AAO04023.1
YP_185598.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_185599.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_185600.1	identified by similarity to EGAD:108398; match to protein family HMM PF00005
YP_185602.1	identified by match to protein family HMM PF01865
YP_185603.1	identified by match to protein family HMM PF01384
YP_185604.1	identified by match to protein family HMM PF01476; match to protein family HMM PF05257
YP_185605.1	identified by similarity to GB:AAO04031.1
YP_185606.1	identified by match to protein family HMM PF00165
YP_185607.1	identified by match to protein family HMM TIGR01889
YP_185608.1	identified by similarity to OMNI:NTL01BH3262; match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_185609.1	identified by similarity to EGAD:48132; match to protein family HMM PF06172
YP_185610.1	identified by similarity to EGAD:173390; match to protein family HMM PF04167
YP_185611.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_185612.1	identified by similarity to EGAD:19549; similarity to EGAD:173457; match to protein family HMM PF07690
YP_185613.1	identified by similarity to OMNI:NTL01BH3813; match to protein family HMM PF04306
YP_185614.1	identified by similarity to GB:AAO04043.1
YP_185615.1	identified by match to protein family HMM PF00583
YP_185616.1	identified by similarity to GB:AAO04044.1
YP_185617.1	identified by similarity to GB:AAO04045.1
YP_185618.1	identified by match to protein family HMM PF00583
YP_185619.1	identified by similarity to OMNI:NTL01BH3087; match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_185620.1	identified by similarity to EGAD:42455; match to protein family HMM PF02639
YP_185622.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell
YP_185623.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_185624.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_185625.1	identified by match to protein family HMM PF01047
YP_185626.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_185627.1	identified by match to protein family HMM PF00248
YP_185628.1	identified by similarity to GB:AAO04057.1
YP_185629.1	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785
YP_185630.1	identified by match to protein family HMM PF03441
YP_185631.1	identified by similarity to EGAD:47605; match to protein family HMM PF07099
YP_185632.1	identified by similarity to EGAD:104132; match to protein family HMM PF03479
YP_185633.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00880
YP_185634.1	identified by similarity to GB:AAO04064.1
YP_185635.1	identified by similarity to SP:P36922; match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_185636.1	identified by match to protein family HMM PF00455
YP_185637.1	identified by similarity to GP:9501780; similarity to EGAD:107874; match to protein family HMM PF00294
YP_185638.1	identified by similarity to EGAD:107401; match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_185639.1	identified by similarity to OMNI:SA0762; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_185640.1	identified by match to protein family HMM PF00248
YP_185641.1	identified by match to protein family HMM PF00535
YP_185642.1	identified by similarity to GP:5726301; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_185643.1	identified by similarity to GP:5726300; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_185644.1	identified by similarity to GP:10174872
YP_185645.1	identified by similarity to GB:AAO04078.1
YP_185646.1	identified by similarity to GB:AAO04081.1
YP_185647.1	identified by match to protein family HMM PF04055
YP_185648.1	identified by match to protein family HMM PF01242
YP_185649.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_185650.1	identified by similarity to EGAD:6981; match to protein family HMM PF00117; match to protein family HMM TIGR00566
YP_185651.1	identified by similarity to GP:10174435; match to protein family HMM PF02682
YP_185652.1	identified by match to protein family HMM PF02626
YP_185653.1	identified by match to protein family HMM PF00884
YP_185654.1	identified by match to protein family HMM PF00005
YP_185655.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_185656.1	identified by similarity to EGAD:37691; match to protein family HMM PF00005
YP_185657.1	identified by similarity to EGAD:37692; match to protein family HMM PF00528; match to protein family HMM PF04069
YP_185658.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_185659.1	identified by similarity to EGAD:107442; match to protein family HMM PF06941
YP_185661.1	identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147
YP_185662.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_185663.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_185664.1	identified by match to protein family HMM PF00892
YP_185665.1	identified by similarity to GP:14329707
YP_185666.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_185667.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_185668.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_185670.1	identified by similarity to EGAD:37681; match to protein family HMM PF01032
YP_185671.1	identified by similarity to EGAD:37682; match to protein family HMM PF01032
YP_185672.1	identified by similarity to EGAD:37683; match to protein family HMM PF00005
YP_185673.1	identified by similarity to EGAD:22102; match to protein family HMM PF01497
YP_185674.1	identified by similarity to EGAD:53989; match to protein family HMM PF05495
YP_185675.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_185676.1	identified by similarity to GB:AAO04118.1; match to protein family HMM PF04229
YP_185678.1	identified by similarity to EGAD:30569
YP_185679.1	identified by similarity to EGAD:13841; match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_185680.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_185681.1	identified by similarity to GP:10172694
YP_185682.1	identified by match to protein family HMM PF06738
YP_185683.1	identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254
YP_185684.1	Possible involvement in methicillin resistance.identified by similarity to EGAD:23076; match to protein family HMM PF00953
YP_185685.1	identified by similarity to OMNI:NTL01BH3636; match to protein family HMM PF01205; match to protein family HMM TIGR00257
YP_185686.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_185687.1	identified by similarity to EGAD:24480; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_185688.1	identified by similarity to EGAD:11495
YP_185689.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_185690.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_185692.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_185694.1	identified by match to protein family HMM PF01476; match to protein family HMM PF05257
YP_185696.1	identified by similarity to OMNI:NT01BS4098
YP_185697.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_185698.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_185699.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_185700.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_185701.1	identified by match to protein family HMM PF00132
YP_185702.1	identified by match to protein family HMM PF00515
YP_185703.1	identified by similarity to GP:6434033; match to protein family HMM PF00070; match to protein family HMM TIGR01292
YP_185704.1	identified by similarity to EGAD:107355; match to protein family HMM PF03668
YP_185705.1	identified by similarity to GP:10176192; match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_185706.1	identified by similarity to EGAD:107351; match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_185707.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_185708.1	identified by match to protein family HMM TIGR01777
YP_185709.1	identified by similarity to GB:AAO04151.1
YP_185711.1	identified by similarity to OMNI:SA0837; match to protein family HMM PF04198
YP_185712.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_185713.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_185714.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_185715.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_185716.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_185717.1	identified by similarity to GB:AAO04159.1
YP_185718.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_185719.1	identified by similarity to EGAD:18058
YP_185720.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_185721.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_185728.1	identified by match to protein family HMM PF00583
YP_185729.1	identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_185730.1	identified by similarity to EGAD:7465
YP_185733.1	identified by similarity to EGAD:8282; match to protein family HMM PF00565
YP_185734.1	identified by match to protein family HMM PF00313
YP_185736.1	identified by similarity to GB:AAO04177.1
YP_185740.1	identified by similarity to GB:AAO04183.1
YP_185741.1	identified by match to protein family HMM PF00300
YP_185742.1	identified by match to protein family HMM PF01810
YP_185744.1	identified by match to protein family HMM PF02566
YP_185745.1	catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis
YP_185746.1	identified by match to protein family HMM PF00881
YP_185747.1	identified by match to protein family HMM PF00085
YP_185748.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_185749.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_185750.1	identified by similarity to EGAD:107990
YP_185751.1	identified by match to protein family HMM PF01751
YP_185753.1	identified by match to protein family HMM PF00005
YP_185754.1	identified by match to protein family HMM PF00528
YP_185755.1	identified by match to protein family HMM PF03180
YP_185756.1	identified by similarity to EGAD:72831; match to protein family HMM PF00589
YP_185757.1	identified by match to protein family HMM PF01123; match to protein family HMM PF02876
YP_185758.1	identified by match to protein family HMM PF01123; match to protein family HMM PF02876
YP_185760.1	identified by similarity to GP:12697827; similarity to GP:14246619; match to protein family HMM PF06114
YP_185761.1	identified by match to protein family HMM PF01381
YP_185762.1	identified by match to protein family HMM PF01381
YP_185763.1	identified by similarity to GP:2689561
YP_185764.1	identified by similarity to GP:14247798
YP_185765.1	identified by similarity to OMNI:NTL01SA1904
YP_185766.1	identified by similarity to GP:11094390; match to protein family HMM PF07342
YP_185767.1	identified by similarity to GP:11094389
YP_185768.1	identified by match to protein family HMM PF05272
YP_185769.1	identified by similarity to GP:11094386
YP_185770.1	identified by similarity to GP:2689555
YP_185771.1	identified by similarity to GP:11094385
YP_185772.1	identified by similarity to GP:11094384
YP_185773.1	identified by similarity to GP:2689553
YP_185774.1	identified by similarity to GP:2689552
YP_185775.1	identified by similarity to GP:2689551
YP_185776.1	identified by similarity to GP:11094380
YP_185777.1	identified by similarity to EGAD:37809; match to protein family HMM PF03592
YP_185778.1	identified by similarity to GP:3212819; match to protein family HMM PF01123; match to protein family HMM PF02876
YP_185783.1	identified by similarity to EGAD:108069; match to protein family HMM PF05532
YP_185784.1	identified by similarity to GP:10174688; match to protein family HMM PF04018
YP_185785.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_185786.1	identified by similarity to EGAD:109075; match to protein family HMM PF01458; match to protein family HMM TIGR01981
YP_185787.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979
YP_185788.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_185789.1	identified by similarity to EGAD:109032; match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_185792.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595
YP_185793.1	identified by similarity to GP:10173821; match to protein family HMM PF03060
YP_185794.1	identified by similarity to EGAD:109000; match to protein family HMM PF01904
YP_185795.1	identified by similarity to GP:10176077; match to protein family HMM PF01925
YP_185796.1	identified by match to protein family HMM PF00149
YP_185797.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_185798.1	identified by similarity to OMNI:NTL01BH3437; match to protein family HMM PF06265
YP_185799.1	identified by similarity to GP:10176055
YP_185800.1	identified by similarity to GP:10176053; match to protein family HMM PF01934
YP_185801.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460
YP_185802.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_185804.1	identified by similarity to GB:AAO04220.1
YP_185805.1	transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid
YP_185806.1	identified by similarity to EGAD:22430; match to protein family HMM PF03062
YP_185807.1	D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid
YP_185808.1	identified by similarity to EGAD:16580; match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918
YP_185809.1	identified by match to protein family HMM PF01106
YP_185810.1	identified by similarity to EGAD:108969; match to protein family HMM PF07315
YP_185811.1	identified by similarity to EGAD:108965; match to protein family HMM PF07293
YP_185812.1	identified by similarity to EGAD:108962; match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_185813.1	identified by match to protein family HMM PF00070
YP_185814.1	identified by similarity to EGAD:17761; match to protein family HMM PF00883
YP_185815.1	identified by similarity to GP:10175982; match to protein family HMM PF03553
YP_185816.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_185817.1	identified by similarity to GB:AAO04236.1
YP_185818.1	subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185819.1	subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185820.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185821.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_185822.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185823.1	subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport
YP_185824.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_185825.1	identified by similarity to EGAD:10092
YP_185826.1	identified by match to protein family HMM PF00160
YP_185827.1	identified by similarity to SP:P80870; match to protein family HMM PF00575
YP_185828.1	identified by match to protein family HMM PF00724
YP_185829.1	identified by similarity to EGAD:21835; match to protein family HMM PF00202; match to protein family HMM TIGR01885
YP_185830.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_185831.1	identified by similarity to EGAD:9350; match to protein family HMM PF03009
YP_185832.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_185833.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_185835.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_185836.1	identified by similarity to GP:4185300
YP_185837.1	identified by similarity to SP:P72364; match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_185838.1	identified by similarity to SP:P72365; match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_185839.1	In Gram positive bacteria, the RexAB system appears to fulfill the biological roles of RecBCD found in Gram negative bacteria. In B. subtilis, RexAB is also known as AddABidentified by similarity to EGAD:12281
YP_185840.1	In Gram positive bacteria, the RexAB system appears to fulfill the biological roles of RecBCD found in Gram negative bacteria. In B. subtilis, RexAB is also known as AddABidentified by similarity to EGAD:18428; match to protein family HMM PF00580
YP_185841.1	identified by match to protein family HMM PF01557
YP_185842.1	identified by similarity to EGAD:108917; match to protein family HMM PF07457
YP_185843.1	NADPH-dependent; catalyzes the reduction of coenzyme A disulfide
YP_185844.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_185845.1	identified by similarity to EGAD:107291; match to protein family HMM PF01883
YP_185846.1	identified by match to protein family HMM PF01757
YP_185847.1	identified by similarity to GP:5231279; match to protein family HMM PF00004; match to protein family HMM PF02861
YP_185848.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_185849.1	identified by similarity to EGAD:19945; match to protein family HMM PF00682
YP_185850.1	identified by similarity to EGAD:43484; match to protein family HMM PF01300
YP_185852.1	identified by similarity to EGAD:108624; match to protein family HMM TIGR00481
YP_185853.1	identified by match to protein family HMM PF03642
YP_185855.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_185856.1	identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801
YP_185857.1	identified by similarity to GB:AAO04276.1
YP_185859.1	identified by match to protein family HMM PF00528
YP_185860.1	identified by match to protein family HMM PF00528
YP_185861.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_185862.1	identified by match to protein family HMM PF00005
YP_185863.1	identified by match to protein family HMM PF00496
YP_185864.1	identified by match to protein family HMM PF00496
YP_185865.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_185866.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_185867.1	identified by match to protein family HMM PF00528
YP_185868.1	identified by match to protein family HMM PF00528
YP_185869.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_185870.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_185871.1	enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence
YP_185872.1	identified by similarity to GP:3211759; match to protein family HMM PF06054
YP_185873.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181
YP_185874.1	identified by similarity to OMNI:NTL01BH2858
YP_185875.1	identified by similarity to EGAD:82734; match to protein family HMM PF01152
YP_185876.1	identified by similarity to EGAD:107332; match to protein family HMM PF01928
YP_185877.1	identified by similarity to OMNI:NTL01BH2853
YP_185878.1	identified by match to protein family HMM PF04607
YP_185879.1	catalyzes the phosphorylation of NAD to NADP
YP_185880.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_185881.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400
YP_185882.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_185883.1	identified by similarity to GP:10175543; match to protein family HMM PF01594
YP_185884.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_185885.1	identified by similarity to OMNI:NTL01BH1443; match to protein family HMM PF00756
YP_185886.1	similar to 2'-5' RNA ligase
YP_185887.1	identified by match to protein family HMM PF07690
YP_185888.1	processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids
YP_185889.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine
YP_185890.1	identified by similarity to GB:AAO04316.1
YP_185891.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_185892.1	identified by similarity to GP:4160468; match to protein family HMM PF03741
YP_185894.1	identified by match to protein family HMM PF00089
YP_185895.1	identified by match to protein family HMM PF02386
YP_185896.1	identified by match to protein family HMM PF02872
YP_185897.1	identified by match to protein family HMM PF06338
YP_185899.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_185900.1	identified by similarity to EGAD:107617
YP_185901.1	identified by match to protein family HMM PF02517
YP_185903.1	identified by match to protein family HMM TIGR01654
YP_185904.1	identified by similarity to EGAD:45945; match to protein family HMM TIGR01655
YP_185905.1	identified by match to protein family HMM PF00005
YP_185908.1	identified by match to protein family HMM PF00534
YP_185909.1	identified by similarity to GP:5822807; match to protein family HMM PF07681
YP_185910.1	identified by match to protein family HMM PF01497
YP_185912.1	identified by similarity to EGAD:47675; match to protein family HMM PF05154
YP_185913.1	identified by match to protein family HMM PF00583
YP_185914.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_185916.1	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543
YP_185917.1	identified by similarity to EGAD:19018; match to protein family HMM PF02776; match to protein family HMM TIGR00173
YP_185918.1	identified by match to protein family HMM PF00561
YP_185919.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_185920.1	identified by similarity to OMNI:SA1055
YP_185921.1	identified by similarity to OMNI:SA1056; match to protein family HMM PF05543
YP_185922.1	identified by similarity to EGAD:7212; match to protein family HMM PF00089
YP_185923.1	identified by match to protein family HMM PF00155
YP_185924.1	identified by similarity to EGAD:107562; match to protein family HMM PF01757
YP_185925.1	identified by match to protein family HMM PF01047
YP_185926.1	identified by similarity to EGAD:42602; match to protein family HMM PF01510; match to protein family HMM PF01832
YP_185927.1	identified by match to protein family HMM PF00583
YP_185928.1	identified by similarity to GP:2267240
YP_185929.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_185930.1	identified by match to protein family HMM PF00144
YP_185931.1	identified by match to protein family HMM PF03626
YP_185932.1	identified by similarity to EGAD:6311; match to protein family HMM PF00510
YP_185933.1	identified by similarity to EGAD:7190; match to protein family HMM PF00115
YP_185934.1	identified by similarity to EGAD:20044; match to protein family HMM PF02790; match to protein family HMM PF06481; match to protein family HMM TIGR01432
YP_185936.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_185937.1	identified by similarity to EGAD:19627; match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_185938.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_185939.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_185940.1	identified by similarity to EGAD:10915; match to protein family HMM PF02700; match to protein family HMM TIGR00302
YP_185941.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_185942.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_185943.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_185944.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_185945.1	identified by similarity to EGAD:16303; match to protein family HMM PF00551; match to protein family HMM TIGR00639
YP_185946.1	involved in de novo purine biosynthesis
YP_185947.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_185948.1	identified by match to protein family HMM PF02361
YP_185949.1	identified by match to protein family HMM PF00005
YP_185950.1	identified by similarity to EGAD:107484
YP_185952.1	identified by similarity to GB:AAO04375.1
YP_185953.1	identified by similarity to EGAD:16798
YP_185954.1	identified by similarity to GB:AAO04377.1
YP_185955.1	identified by similarity to OMNI:SA1091; match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_185956.1	identified by similarity to EGAD:13195; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_185957.1	identified by similarity to GB:AAO04380.1
YP_185958.1	identified by match to protein family HMM PF01654
YP_185959.1	identified by similarity to GP:4514629
YP_185960.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_185962.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_185963.1	identified by similarity to OMNI:NTL01BH2664; match to protein family HMM PF07288
YP_185964.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_185965.1	identified by similarity to SP:P21884
YP_185966.1	identified by similarity to SP:P21881; match to protein family HMM PF00676
YP_185967.1	identified by similarity to EGAD:13437; similarity to GP:7107452; match to protein family HMM PF02779; match to protein family HMM PF02780
YP_185968.1	identified by similarity to EGAD:102440; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_185969.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_185970.1	identified by similarity to OMNI:NTL01LL0557; match to protein family HMM PF05256
YP_185971.1	identified by match to protein family HMM PF01381
YP_185972.1	identified by match to protein family HMM PF00005
YP_185973.1	identified by match to protein family HMM PF00528
YP_185974.1	identified by similarity to EGAD:15490; match to protein family HMM PF00528
YP_185975.1	identified by similarity to EGAD:16715; match to protein family HMM PF01547
YP_185976.1	identified by similarity to GB:AAO04398.1
YP_185978.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_185979.1	identified by similarity to EGAD:107910; match to protein family HMM PF06335
YP_185980.1	identified by match to protein family HMM PF00459
YP_185981.1	identified by similarity to GB:AAO04403.1
YP_185982.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_185983.1	identified by similarity to EGAD:107937
YP_185984.1	identified by similarity to OMNI:NT01BS1746
YP_185985.1	depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein
YP_185986.1	identified by similarity to EGAD:20048; match to protein family HMM PF01098
YP_185987.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_185988.1	identified by similarity to EGAD:18452; match to protein family HMM PF02628
YP_185989.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_185990.1	identified by similarity to EGAD:156110; match to protein family HMM PF04238
YP_185992.1	identified by similarity to OMNI:NT01BS1763
YP_185993.1	identified by similarity to OMNI:NT01BS1766; match to protein family HMM PF07050
YP_185994.1	identified by similarity to EGAD:9350; match to protein family HMM PF03009
YP_185995.1	identified by similarity to OMNI:EF2453
YP_185996.1	identified by similarity to OMNI:NTL01BH2594
YP_185997.1	identified by similarity to EGAD:108192; match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_185998.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_185999.1	identified by similarity to OMNI:NTL01BH2588; match to protein family HMM PF05636
YP_186000.1	identified by similarity to GP:10175205; match to protein family HMM PF02620
YP_186001.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_186002.1	identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_186003.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05031; match to protein family HMM TIGR01167
YP_186004.1	identified by similarity to GP:10175922; match to protein family HMM PF05031
YP_186006.1	identified by similarity to EGAD:16402; match to protein family HMM PF01497
YP_186007.1	identified by similarity to EGAD:7245; match to protein family HMM PF01032
YP_186008.1	identified by similarity to OMNI:NTL01BH3297; match to protein family HMM PF07170
YP_186009.1	iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source
YP_186010.1	identified by match to protein family HMM PF00588
YP_186011.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_186012.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_186013.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_186014.1	identified by similarity to EGAD:107725; match to protein family HMM PF05164
YP_186015.1	identified by match to protein family HMM PF02674
YP_186016.1	identified by match to protein family HMM PF02231; match to protein family HMM PF02811
YP_186017.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_186018.1	identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_186020.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_186021.1	identified by similarity to EGAD:20778; match to protein family HMM TIGR02046
YP_186022.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_186023.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_186024.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_186025.1	hydrolyzes non-standard nucleotides such as xanthine and inosine
YP_186026.1	identified by similarity to OMNI:NTL01BH3069; match to protein family HMM TIGR00040
YP_186027.1	identified by similarity to EGAD:16905
YP_186029.1	FLIPr; secreted protein that blocks the formyl peptide receptor-like 1 (FPRL1) found in neutrophils, monocytes, B cells, and NK cells; inhibits the binding of chemoattractants (such as formylated peptides) to FPRL1, which initiates the phagocyte mobilization towards the infection site
YP_186031.1	identified by similarity to EGAD:16905
YP_186036.1	identified by similarity to SP:P09616; match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_186041.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_186042.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_186043.1	these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation
YP_186044.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_186045.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_186046.1	identified by match to protein family HMM PF03606
YP_186049.1	identified by similarity to EGAD:9804; match to protein family HMM PF05480
YP_186050.1	identified by similarity to EGAD:6344; match to protein family HMM PF05480
YP_186051.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_186052.1	identified by match to protein family HMM PF00583
YP_186053.1	identified by similarity to EGAD:37696
YP_186054.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_186055.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_186056.1	identified by similarity to EGAD:21242; match to protein family HMM TIGR02209
YP_186057.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793
YP_186058.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_186059.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_186060.1	identified by similarity to EGAD:18732; match to protein family HMM PF03799
YP_186061.1	identified by similarity to EGAD:18700; match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_186062.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_186063.1	identified by similarity to EGAD:108215; match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_186064.1	identified by similarity to EGAD:108216; match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_186065.1	identified by match to protein family HMM PF04472
YP_186066.1	identified by match to protein family HMM PF02325
YP_186067.1	identified by similarity to GP:4009474; match to protein family HMM PF01479
YP_186068.1	identified by match to protein family HMM PF05103
YP_186069.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_186070.1	identified by match to protein family HMM PF00903
YP_186071.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_186072.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_186073.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_186074.1	identified by similarity to EGAD:20988; match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_186075.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_186076.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_186077.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_186078.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_186079.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_186080.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_186081.1	identified by similarity to GB:AAO04479.1
YP_186082.1	identified by similarity to OMNI:NTL03PA01359
YP_186083.1	identified by match to protein family HMM PF05670; match to protein family HMM PF05833
YP_186084.1	Essential for recycling GMP and indirectly, cGMP
YP_186085.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_186086.1	identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521
YP_186087.1	identified by similarity to EGAD:98914; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595
YP_186089.1	identified by similarity to EGAD:47675; match to protein family HMM PF05154
YP_186090.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_186091.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460
YP_186092.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_186093.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_186094.1	identified by match to protein family HMM PF00481
YP_186095.1	identified by similarity to EGAD:108267; match to protein family HMM PF03193; match to protein family HMM TIGR00157
YP_186096.1	identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163
YP_186097.1	identified by similarity to EGAD:108271; match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378
YP_186098.1	required for 70S ribosome assembly
YP_186099.1	identified by similarity to EGAD:108275; match to protein family HMM PF03780
YP_186100.1	identified by match to protein family HMM PF02734
YP_186101.1	catalyzes branch migration in Holliday junction intermediates
YP_186102.1	negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria
YP_186103.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_186104.1	identified by similarity to EGAD:97846; match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_186105.1	identified by similarity to EGAD:108288; match to protein family HMM PF00106; match to protein family HMM TIGR01830
YP_186107.1	carries the fatty acid chain in fatty acid biosynthesis
YP_186108.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_186109.1	identified by similarity to EGAD:37839; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168
YP_186110.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_186111.1	identified by similarity to OMNI:NTL01BH2488; match to protein family HMM PF04297
YP_186112.1	identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_186113.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_186114.1	Essential for efficient processing of 16S rRNA
YP_186115.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_186116.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_186117.1	identified by similarity to EGAD:108285
YP_186118.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_186119.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_186120.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_186121.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_186122.1	identified by similarity to GP:3767593; match to protein family HMM PF01476; match to protein family HMM PF04650; match to protein family HMM PF05257; match to protein family HMM TIGR01168
YP_186123.1	identified by match to protein family HMM PF02388
YP_186124.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_186125.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_186126.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_186127.1	identified by similarity to EGAD:14579; similarity to GP:9622622; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224
YP_186128.1	heat shock protein involved in degradation of misfolded proteins
YP_186129.1	heat shock protein involved in degradation of misfolded proteins
YP_186130.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_186131.2	truncated; one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_186133.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_186134.1	Catalyzes the phosphorylation of UMP to UDP
YP_186135.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_186136.1	catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate
YP_186137.1	identified by similarity to EGAD:108469; match to protein family HMM PF01148
YP_186138.1	identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_186139.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_186140.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_186141.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_186142.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_186143.1	identified by similarity to OMNI:NTL01BH2418; match to protein family HMM PF04296
YP_186144.1	identified by similarity to EGAD:9717; match to protein family HMM PF01248
YP_186145.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_186146.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_186147.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_186148.1	identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083
YP_186149.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_186150.1	identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_186151.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_186152.1	identified by similarity to EGAD:23720; match to protein family HMM PF01580
YP_186153.1	identified by match to protein family HMM PF07702
YP_186154.1	identified by similarity to OMNI:NTL01BH2396; match to protein family HMM PF05193
YP_186155.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_186156.1	identified by similarity to GP:10175011; match to protein family HMM PF00106
YP_186157.1	identified by similarity to GP:10175009
YP_186159.1	identified by similarity to EGAD:30182; match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_186160.1	identified by similarity to EGAD:108567; match to protein family HMM PF00994; match to protein family HMM TIGR00200
YP_186161.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_186162.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_186163.1	identified by similarity to GB:AAO04562.1
YP_186164.1	identified by similarity to EGAD:108574; match to protein family HMM PF00149; match to protein family HMM TIGR00282
YP_186165.1	identified by match to protein family HMM PF01558; match to protein family HMM PF01855
YP_186166.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_186168.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_186169.1	identified by similarity to EGAD:108740
YP_186170.1	identified by similarity to OMNI:EF2778; match to protein family HMM TIGR02359
YP_186171.1	This protein performs the mismatch recognition step during the DNA repair process
YP_186172.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_186173.1	identified by similarity to EGAD:18158; match to protein family HMM PF04309
YP_186174.1	identified by similarity to EGAD:21817; match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_186175.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_186176.1	identified by similarity to EGAD:18115; match to protein family HMM PF01266
YP_186177.1	identified by match to protein family HMM PF00561
YP_186178.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_186179.1	identified by similarity to EGAD:12661; match to protein family HMM PF01423
YP_186180.1	identified by similarity to EGAD:45646; match to protein family HMM PF00255
YP_186181.1	identified by match to protein family HMM PF04471
YP_186182.1	identified by match to protein family HMM PF06838
YP_186183.1	identified by similarity to EGAD:15799; match to protein family HMM PF00376
YP_186184.1	identified by similarity to EGAD:102439; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_186201.1	identified by similarity to GB:AAO04588.1
YP_186202.1	identified by similarity to OMNI:PG0474
YP_186203.1	identified by similarity to GB:AAO04593.1
YP_186204.1	identified by similarity to SP:O66043; match to protein family HMM PF00614
YP_186205.1	identified by match to protein family HMM PF00005
YP_186207.1	identified by match to protein family HMM PF02518
YP_186208.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_186210.1	identified by match to protein family HMM PF00565
YP_186211.1	identified by similarity to GB:AAO04603.1
YP_186212.1	identified by similarity to GB:AAO04604.1
YP_186213.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_186215.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_186216.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_186217.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_186218.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_186219.1	identified by similarity to GB:AAO04611.1
YP_186220.1	identified by match to protein family HMM PF00324
YP_186221.1	identified by similarity to EGAD:29401; match to protein family HMM PF00199
YP_186222.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_186223.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_186224.1	identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306
YP_186226.1	identified by similarity to EGAD:107961
YP_186227.1	Represses a number of genes involved in the response to DNA damage
YP_186228.1	identified by similarity to GB:AAO04620.1
YP_186229.1	identified by similarity to OMNI:NTL01SPL1328; match to protein family HMM PF05979
YP_186230.1	identified by similarity to EGAD:29878; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232
YP_186231.1	identified by similarity to SP:Q8CSP3; match to protein family HMM PF03672
YP_186233.1	identified by similarity to EGAD:29885; match to protein family HMM PF07301
YP_186234.1	identified by similarity to EGAD:9310; match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_186235.1	identified by similarity to EGAD:7288
YP_186236.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_186237.1	identified by similarity to EGAD:45763; match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_186238.1	Catalyzes the conversion of citrate to isocitrate
YP_186239.1	identified by similarity to GP:10174908; match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_186240.1	identified by similarity to EGAD:109071; match to protein family HMM PF07113
YP_186241.1	identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023
YP_186242.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_186243.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_186244.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_186245.1	identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123
YP_186247.1	identified by similarity to EGAD:108679; match to protein family HMM PF01594
YP_186248.1	identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_186249.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_186250.1	identified by similarity to EGAD:20070; match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_186251.1	identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013
YP_186252.1	identified by match to protein family HMM PF00817
YP_186253.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_186254.1	identified by similarity to EGAD:108848; match to protein family HMM PF05343
YP_186255.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_186256.1	identified by similarity to SP:Q02003; match to protein family HMM PF00117; match to protein family HMM TIGR00566
YP_186257.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_186258.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_186259.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_186260.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_186261.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_186262.1	identified by similarity to EGAD:29547; match to protein family HMM PF02388
YP_186263.1	identified by similarity to EGAD:29548; match to protein family HMM PF02388
YP_186264.1	identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_186266.1	identified by match to protein family HMM PF00005
YP_186267.1	identified by match to protein family HMM PF00005
YP_186268.1	identified by match to protein family HMM PF00528
YP_186269.1	identified by match to protein family HMM PF00528
YP_186270.1	identified by similarity to GB:AAO04661.1
YP_186271.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181
YP_186272.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_186273.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_186274.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_186275.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_186276.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136
YP_186277.1	identified by similarity to GP:8918792
YP_186278.1	identified by similarity to EGAD:107281
YP_186279.1	identified by match to protein family HMM PF00005
YP_186280.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_186281.1	identified by similarity to EGAD:15165; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296
YP_186282.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_186283.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_186284.1	identified by similarity to EGAD:165602; match to protein family HMM PF00132
YP_186285.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_186286.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168
YP_186287.1	identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_186289.1	identified by match to protein family HMM PF00313
YP_186290.1	identified by similarity to OMNI:EF2065; match to protein family HMM PF06279
YP_186291.1	catalyzes the hydrolysis of acylphosphate
YP_186292.1	identified by similarity to EGAD:19663
YP_186293.1	identified by similarity to EGAD:143199; match to protein family HMM PF05816
YP_186295.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_186296.1	identified by similarity to EGAD:109250
YP_186297.1	identified by similarity to EGAD:42972
YP_186298.1	identified by similarity to GP:10174822
YP_186299.1	identified by similarity to GP:10174794
YP_186300.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_186301.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_186302.1	identified by similarity to GP:9230553; similarity to OMNI:SA1450; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_186303.1	identified by similarity to GP:9230552; similarity to OMNI:SA1451; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_186304.1	identified by match to protein family HMM PF01569
YP_186305.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_186306.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_186307.1	identified by similarity to OMNI:EF1680; match to protein family HMM PF06855
YP_186308.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_186309.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_186310.1	identified by similarity to SP:P10167; match to protein family HMM PF00186
YP_186311.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_186312.1	identified by similarity to EGAD:45736; match to protein family HMM PF06491
YP_186313.1	identified by similarity to OMNI:NTL01BH1721; match to protein family HMM PF03130
YP_186314.1	identified by similarity to GP:5738608
YP_186315.1	identified by similarity to EGAD:45731
YP_186316.1	identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697
YP_186318.1	identified by match to protein family HMM PF00075
YP_186319.1	identified by match to protein family HMM PF01468; match to protein family HMM PF04650; match to protein family HMM PF07554; match to protein family HMM PF07564; match to protein family HMM TIGR01168; match to protein family HMM TIGR01643
YP_186320.1	identified by match to protein family HMM PF07690
YP_186321.1	identified by match to protein family HMM PF00324
YP_186322.1	catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic
YP_186323.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_186324.1	identified by match to protein family HMM PF01367; match to protein family HMM PF02739
YP_186325.1	identified by similarity to OMNI:NTL01BH1703
YP_186326.1	identified by similarity to OMNI:NTL01BH1857; match to protein family HMM PF03413; match to protein family HMM PF03929
YP_186328.1	identified by similarity to EGAD:37711; match to protein family HMM PF01170
YP_186329.1	identified by match to protein family HMM PF05103
YP_186330.1	identified by similarity to EGAD:37709; match to protein family HMM PF06908
YP_186331.1	identified by similarity to OMNI:NTL01BH1710
YP_186333.1	functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC
YP_186334.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_186335.1	identified by similarity to GB:AAO04736.1
YP_186336.1	identified by similarity to EGAD:18451; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_186337.1	identified by similarity to EGAD:16577; match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_186338.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_186339.1	identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407
YP_186340.1	identified by similarity to EGAD:30996; match to protein family HMM PF03099; match to protein family HMM TIGR00121
YP_186341.1	catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity
YP_186342.1	identified by match to protein family HMM PF00534
YP_186343.1	identified by similarity to OMNI:NTL01BH1682; match to protein family HMM PF03819
YP_186344.1	identified by similarity to OMNI:NTL01BH1680; match to protein family HMM PF04298
YP_186345.1	identified by similarity to OMNI:NTL01BH1678; match to protein family HMM PF07187
YP_186346.1	identified by similarity to OMNI:NTL01BH1673
YP_186347.1	identified by similarity to EGAD:37740
YP_186348.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_186349.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_186350.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_186353.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_186354.1	identified by similarity to EGAD:97466; match to protein family HMM PF00348
YP_186355.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_186356.1	identified by similarity to GB:AAO04756.1
YP_186357.1	identified by similarity to EGAD:8587; match to protein family HMM PF00216
YP_186358.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_186359.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_186360.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_186361.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_186362.1	identified by similarity to EGAD:8552; match to protein family HMM PF00710
YP_186363.1	identified by match to protein family HMM PF00070
YP_186365.1	identified by similarity to GP:1397239; match to protein family HMM PF01476
YP_186366.1	identified by similarity to EGAD:37724; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00614
YP_186367.1	identified by similarity to EGAD:37723
YP_186368.1	identified by similarity to SP:P50727
YP_186369.1	identified by similarity to EGAD:37721
YP_186376.1	identified by similarity to GP:7839534; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_186377.1	identified by similarity to GP:7839533; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_186378.1	identified by similarity to EGAD:14622; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_186379.1	identified by similarity to EGAD:15088; match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_186380.1	identified by similarity to EGAD:14314; match to protein family HMM PF02616
YP_186381.1	identified by similarity to EGAD:12647; match to protein family HMM PF03745
YP_186382.1	identified by similarity to EGAD:24225; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225
YP_186383.1	identified by similarity to EGAD:14407; match to protein family HMM PF01475
YP_186384.1	identified by match to protein family HMM PF00293
YP_186385.1	identified by match to protein family HMM PF00248
YP_186387.1	identified by match to protein family HMM PF00106
YP_186388.1	identified by similarity to EGAD:45894; match to protein family HMM PF01089; match to protein family HMM TIGR00112
YP_186389.1	identified by match to protein family HMM PF00753
YP_186390.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_186391.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_186392.1	identified by similarity to EGAD:18543; match to protein family HMM PF00128
YP_186393.1	identified by similarity to EGAD:23070; match to protein family HMM PF00356; match to protein family HMM PF00532
YP_186394.1	identified by match to protein family HMM PF00903
YP_186395.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_186396.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883
YP_186398.1	identified by similarity to EGAD:45880; match to protein family HMM PF06081
YP_186399.1	identified by similarity to EGAD:45876; match to protein family HMM PF06491
YP_186401.1	identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_186402.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_186403.1	identified by match to protein family HMM PF00676
YP_186404.1	identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350
YP_186405.1	identified by similarity to EGAD:12400; match to protein family HMM TIGR00634
YP_186406.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_186407.1	identified by similarity to SP:Q08291; match to protein family HMM PF00348
YP_186408.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_186409.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_186410.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_186411.1	identified by similarity to EGAD:45861; match to protein family HMM PF03780
YP_186412.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_186413.1	identified by similarity to SP:P49786; match to protein family HMM PF00364; match to protein family HMM TIGR00531
YP_186414.1	identified by similarity to EGAD:108527
YP_186416.1	identified by similarity to EGAD:23152; match to protein family HMM PF05257
YP_186417.1	identified by similarity to EGAD:108524
YP_186418.1	identified by match to protein family HMM PF01580
YP_186419.1	identified by similarity to EGAD:108522
YP_186421.1	identified by similarity to EGAD:108519
YP_186422.1	identified by similarity to GP:1881301
YP_186423.1	identified by similarity to EGAD:108511; match to protein family HMM PF02486
YP_186425.1	identified by similarity to EGAD:108509
YP_186427.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_186428.1	identified by similarity to GP:3372642; match to protein family HMM PF00557
YP_186429.1	identified by similarity to GP:6606214
YP_186430.1	identified by similarity to GB:AAO04815.1
YP_186431.1	identified by match to protein family HMM PF03099
YP_186432.1	identified by match to protein family HMM PF00581
YP_186433.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_186434.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_186435.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_186436.1	identified by similarity to EGAD:29699; match to protein family HMM PF01202
YP_186439.1	identified by similarity to EGAD:18290
YP_186440.1	identified by similarity to EGAD:21818; match to protein family HMM PF00482
YP_186441.1	identified by similarity to EGAD:12231; match to protein family HMM PF00437
YP_186442.1	identified by match to protein family HMM PF00753
YP_186443.1	identified by similarity to EGAD:36859; match to protein family HMM PF01910; match to protein family HMM TIGR00106
YP_186444.1	identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744
YP_186445.1	identified by similarity to EGAD:45836; match to protein family HMM PF06014
YP_186446.1	identified by match to protein family HMM PF01694
YP_186447.1	identified by match to protein family HMM PF01812
YP_186448.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_186449.1	identified by similarity to OMNI:SA1609; match to protein family HMM PF00905; match to protein family HMM PF03717
YP_186450.1	identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777
YP_186451.1	identified by match to protein family HMM PF01475
YP_186452.1	identified by match to protein family HMM PF00950
YP_186453.1	identified by match to protein family HMM PF00005
YP_186454.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_186455.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_186456.1	identified by similarity to OMNI:NTL01BH1383; match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_186457.1	identified by similarity to OMNI:NTL01LL1087; match to protein family HMM PF04816
YP_186458.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_186459.1	identified by similarity to EGAD:32007; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391
YP_186460.1	identified by similarity to OMNI:NTL01BH1376; match to protein family HMM PF03618
YP_186461.1	identified by match to protein family HMM PF00571
YP_186462.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_186463.1	identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613
YP_186464.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_186465.1	identified by similarity to EGAD:8728; match to protein family HMM PF00383; match to protein family HMM TIGR01354
YP_186466.1	identified by similarity to EGAD:11045; match to protein family HMM PF01219
YP_186467.1	identified by similarity to EGAD:109021; match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_186468.1	identified by match to protein family HMM PF00013; match to protein family HMM PF02562
YP_186469.1	identified by similarity to GB:AAO04858.1
YP_186470.1	identified by similarity to EGAD:45808; match to protein family HMM PF07251
YP_186471.1	identified by similarity to EGAD:45807
YP_186472.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_186473.1	identified by similarity to OMNI:NTL01BH1354; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_186474.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_186475.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_186476.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_186477.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_186478.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_186479.1	identified by similarity to EGAD:15810; match to protein family HMM PF01628; match to protein family HMM TIGR00331
YP_186480.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_186481.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_186482.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_186483.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_186484.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_186485.1	identified by similarity to EGAD:23914; match to protein family HMM PF00383
YP_186486.1	identified by similarity to OMNI:NTL01SA1471; match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_186487.1	identified by similarity to OMNI:NTL01BH1333
YP_186488.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_186489.1	identified by similarity to OMNI:NTL01BH1330; match to protein family HMM PF01966; match to protein family HMM TIGR00488
YP_186490.1	identified by similarity to OMNI:NTL01SPL0234; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482
YP_186491.1	identified by similarity to EGAD:45796; match to protein family HMM PF01985; match to protein family HMM TIGR00253
YP_186492.1	identified by similarity to EGAD:45757; match to protein family HMM PF01488; match to protein family HMM TIGR00507
YP_186493.1	in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
YP_186494.1	identified by similarity to OMNI:NTL01BS02561; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668
YP_186495.1	identified by similarity to EGAD:16140; match to protein family HMM PF01048; match to protein family HMM TIGR01704
YP_186497.1	identified by match to protein family HMM PF01123; match to protein family HMM PF02876
YP_186499.1	identified by similarity to GP:10174438; similarity to OMNI:NTL01BH1823
YP_186500.1	identified by match to protein family HMM PF03746
YP_186501.1	identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_186502.1	identified by similarity to SP:P49786; match to protein family HMM PF00364
YP_186503.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_186504.1	identified by similarity to OMNI:NTL01CJ01472; match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_186505.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_186506.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_186507.1	identified by match to protein family HMM PF01136
YP_186508.1	identified by match to protein family HMM PF01136
YP_186509.1	identified by match to protein family HMM PF01596
YP_186510.1	identified by similarity to OMNI:EF1204; match to protein family HMM PF06949
YP_186511.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_186512.1	identified by similarity to OMNI:NTL01BH1271; match to protein family HMM PF06135
YP_186513.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_186514.1	identified by match to protein family HMM TIGR01448
YP_186515.1	identified by similarity to EGAD:107352; match to protein family HMM PF00515
YP_186516.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_186517.1	identified by match to protein family HMM PF00266
YP_186518.1	identified by match to protein family HMM PF00296
YP_186519.1	identified by similarity to GB:AAO04906.1
YP_186520.1	identified by similarity to GP:13622388; match to protein family HMM PF05532
YP_186521.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_186522.1	identified by match to protein family HMM PF00004
YP_186523.1	identified by match to protein family HMM PF00899
YP_186524.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_186525.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_186526.1	identified by match to protein family HMM PF01520
YP_186527.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_186528.1	identified by similarity to EGAD:107375; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_186529.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_186530.1	identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_186531.1	part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_186532.1	identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739
YP_186533.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_186534.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_186535.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_186536.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_186537.1	identified by match to protein family HMM PF01842
YP_186538.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_186539.1	involved in the peptidyltransferase reaction during translation
YP_186540.1	identified by similarity to EGAD:7018; match to protein family HMM PF04327
YP_186541.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_186542.1	identified by similarity to EGAD:24238; match to protein family HMM PF04093
YP_186543.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_186546.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_186547.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_186548.1	identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_186549.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_186550.1	identified by similarity to EGAD:6433; match to protein family HMM PF03352
YP_186551.1	identified by match to protein family HMM PF05145
YP_186552.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_186553.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_186554.1	identified by match to protein family HMM PF02602
YP_186555.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_186556.1	identified by similarity to EGAD:15411; match to protein family HMM PF01578
YP_186557.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_186558.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_186559.1	binds and unfolds substrates as part of the ClpXP protease
YP_186560.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_186561.1	identified by similarity to GB:AAO04950.1
YP_186562.1	identified by match to protein family HMM PF00293
YP_186563.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_186564.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_186565.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_186566.1	identified by match to protein family HMM PF00324
YP_186567.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_186568.1	Primosomal protein that may act to load helicase DnaC during DNA replication
YP_186569.1	identified by similarity to EGAD:12808; match to protein family HMM PF07261
YP_186570.1	identified by similarity to OMNI:NTL01BH3149; match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_186571.1	identified by similarity to EGAD:107759; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_186572.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_186573.1	In the Gram-positive bacteria, the preferred gene symbol is fpg. In other prokaryotes, the gene symbol is mutM.identified by similarity to EGAD:8852; match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577
YP_186574.1	identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593
YP_186576.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_186577.1	identified by similarity to EGAD:18490; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_186578.1	Converts isocitrate to alpha ketoglutarate
YP_186579.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_186580.1	identified by match to protein family HMM PF00324
YP_186581.1	identified by similarity to EGAD:108035; match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_186582.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_186583.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_186584.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_186585.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_186586.1	identified by similarity to EGAD:108043; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM TIGR00594
YP_186587.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_186588.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085
YP_186589.1	identified by match to protein family HMM PF00582
YP_186590.1	identified by similarity to EGAD:30261; match to protein family HMM PF00557
YP_186592.1	identified by similarity to EGAD:15508; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_186593.1	identified by match to protein family HMM PF00582
YP_186594.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_186595.1	identified by similarity to EGAD:11836
YP_186596.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_186597.1	identified by similarity to OMNI:NTL01BH2125; match to protein family HMM PF01925
YP_186598.1	Required for the synthesis of the thiazole moiety
YP_186599.1	identified by match to protein family HMM PF00266
YP_186601.1	acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation
YP_186602.1	identified by match to protein family HMM PF01590
YP_186603.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_186604.1	identified by similarity to EGAD:9350; match to protein family HMM PF03009
YP_186605.1	identified by match to protein family HMM PF02566
YP_186606.1	identified by match to protein family HMM PF00266
YP_186607.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_186609.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01998
YP_186610.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_186611.1	identified by similarity to OMNI:NTL01LL2179; match to protein family HMM PF00089; match to protein family HMM PF00595
YP_186612.1	identified by similarity to EGAD:22377; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234
YP_186613.1	identified by match to protein family HMM PF00912
YP_186614.1	identified by match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_186615.2	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_186616.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_186617.1	identified by similarity to EGAD:23882
YP_186618.1	identified by similarity to EGAD:19784; match to protein family HMM PF00850
YP_186619.1	identified by similarity to EGAD:41199; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481
YP_186620.1	catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate
YP_186622.1	identified by similarity to EGAD:30617; match to protein family HMM PF06103
YP_186623.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_186624.1	identified by match to protein family HMM PF01580
YP_186625.1	identified by match to protein family HMM PF01588
YP_186626.1	identified by similarity to OMNI:NTL01BS02977; match to protein family HMM PF07285
YP_186627.1	identified by match to protein family HMM PF00085
YP_186628.1	identified by similarity to EGAD:40297; match to protein family HMM PF05343
YP_186629.1	identified by similarity to OMNI:EF3039; match to protein family HMM PF03413
YP_186630.1	identified by match to protein family HMM PF00753
YP_186631.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_186632.1	identified by similarity to OMNI:NTL01BH3266; match to protein family HMM PF01636
YP_186633.1	identified by similarity to EGAD:38031; match to protein family HMM PF01063; match to protein family HMM TIGR01121
YP_186634.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_186635.1	identified by similarity to GB:AAO05024.1
YP_186636.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_186637.1	identified by match to protein family HMM PF01943
YP_186638.1	identified by similarity to OMNI:NTL01BH3282; match to protein family HMM PF03486; match to protein family HMM TIGR00275
YP_186639.1	identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_186640.1	identified by match to protein family HMM PF00581
YP_186641.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_186642.1	identified by match to protein family HMM PF07690
YP_186643.1	identified by similarity to EGAD:108408; match to protein family HMM PF04055; match to protein family HMM TIGR01212
YP_186644.1	identified by similarity to OMNI:NTL01BH3288; match to protein family HMM PF06962
YP_186645.1	identified by similarity to GP:6651452; match to protein family HMM TIGR01889
YP_186646.1	identified by similarity to OMNI:NTL01BH3291
YP_186648.1	identified by match to protein family HMM PF01619
YP_186649.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_186650.1	identified by similarity to EGAD:14797; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506
YP_186651.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_186652.1	identified by similarity to EGAD:14315; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326
YP_186653.1	identified by similarity to GB:AAO05041.1
YP_186654.1	identified by similarity to EGAD:10168; match to protein family HMM PF01022
YP_186655.1	identified by similarity to OMNI:NTL02EC4342; match to protein family HMM PF02040; match to protein family HMM TIGR00935
YP_186656.1	catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates
YP_186657.1	identified by match to protein family HMM PF01832
YP_186658.1	identified by similarity to GB:AAN32737.1
YP_186659.1	identified by match to protein family HMM PF04542
YP_186660.1	identified by similarity to GB:AAN32735.1
YP_186661.1	identified by similarity to GB:AAO05047.1
YP_186662.1	identified by match to protein family HMM PF02517
YP_186663.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_186664.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_186665.1	identified by match to protein family HMM PF02537
YP_186666.1	identified by match to protein family HMM PF00248
YP_186667.1	identified by similarity to GB:AAO05056.1
YP_186668.1	methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_186669.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_186670.1	identified by match to protein family HMM PF01797
YP_186671.1	identified by similarity to EGAD:108415
YP_186672.1	identified by match to protein family HMM PF00293
YP_186673.1	identified by similarity to OMNI:NTL01BH2832; match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_186674.1	identified by similarity to OMNI:NTL01SA1672; match to protein family HMM TIGR01928
YP_186675.1	identified by similarity to EGAD:102199; match to protein family HMM PF00501; match to protein family HMM TIGR01923
YP_186678.1	identified by similarity to EGAD:108623
YP_186689.1	identified by match to protein family HMM PF01420
YP_186690.1	identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497
YP_186692.1	identified by similarity to OMNI:SA1864; match to protein family HMM PF00089
YP_186693.1	identified by similarity to OMNI:SA1865; match to protein family HMM PF00089
YP_186694.1	identified by similarity to OMNI:NTL01SA1687; match to protein family HMM PF00089
YP_186695.1	identified by match to protein family HMM PF00089
YP_186696.1	identified by similarity to OMNI:SA1868; match to protein family HMM PF00089
YP_186697.1	identified by similarity to GP:9739156; match to protein family HMM PF00089
YP_186699.1	identified by similarity to EGAD:41184
YP_186700.1	identified by similarity to EGAD:41183
YP_186701.1	identified by similarity to EGAD:41182; match to protein family HMM PF00005
YP_186702.1	identified by similarity to EGAD:8533; match to protein family HMM PF00082
YP_186703.1	identified by similarity to EGAD:10889; match to protein family HMM PF02441
YP_186704.1	identified by similarity to EGAD:6172; match to protein family HMM PF04737; match to protein family HMM PF04738
YP_186705.1	identified by similarity to EGAD:6281; match to protein family HMM PF02052
YP_186706.1	identified by similarity to EGAD:13897; match to protein family HMM PF01610
YP_186707.1	identified by similarity to GP:2765304; match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_186708.1	identified by similarity to EGAD:22934; match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_186711.1	identified by similarity to EGAD:109412
YP_186713.1	catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX
YP_186714.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_186715.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_186717.1	identified by similarity to OMNI:SA1891
YP_186718.1	identified by match to protein family HMM PF05975
YP_186719.1	identified by match to protein family HMM PF00005
YP_186720.1	identified by match to protein family HMM PF01230
YP_186721.1	identified by similarity to GB:AAO05118.1
YP_186722.1	identified by similarity to OMNI:NTL01BH1184
YP_186723.1	identified by similarity to EGAD:7364; match to protein family HMM PF00639
YP_186724.1	catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates
YP_186725.1	identified by similarity to GB:AAO05123.1
YP_186726.1	identified by match to protein family HMM PF00149
YP_186727.1	identified by similarity to EGAD:108585; match to protein family HMM PF06133
YP_186728.1	identified by match to protein family HMM PF04286
YP_186729.1	identified by match to protein family HMM PF01381
YP_186730.1	identified by similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196
YP_186731.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518
YP_186732.1	identified by match to protein family HMM PF00849
YP_186733.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_186734.1	identified by similarity to GB:AAO05132.1
YP_186736.1	identified by similarity to GB:AAO05133.1
YP_186738.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_186739.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276
YP_186740.1	identified by match to protein family HMM PF00005
YP_186741.1	identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_186742.1	identified by match to protein family HMM PF02378
YP_186743.1	identified by similarity to EGAD:13897; match to protein family HMM PF01610
YP_186744.1	identified by match to protein family HMM PF01475
YP_186745.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_186746.1	identified by match to protein family HMM PF00578
YP_186747.1	converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate
YP_186748.1	identified by match to protein family HMM PF06081
YP_186749.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_186750.1	identified by match to protein family HMM PF04167
YP_186751.1	identified by similarity to EGAD:19424; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_186752.1	identified by match to protein family HMM PF04307
YP_186756.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_186757.1	monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis
YP_186758.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_186760.1	identified by similarity to GP:10173504; match to protein family HMM PF04055
YP_186761.1	identified by match to protein family HMM PF03061
YP_186762.1	identified by similarity to SP:Q9X4A7; match to protein family HMM PF02073
YP_186763.1	identified by match to protein family HMM PF06569
YP_186764.1	identified by match to protein family HMM PF01451
YP_186765.1	identified by similarity to GB:AAO05166.1
YP_186766.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_186767.1	identified by similarity to GP:9501772; similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196
YP_186768.1	identified by similarity to OMNI:NTL02SA1888; match to protein family HMM PF02518
YP_186771.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_186775.1	identified by match to protein family HMM PF07685
YP_186777.1	identified by similarity to EGAD:8114; match to protein family HMM PF00210
YP_186779.1	identified by match to protein family HMM PF00929
YP_186780.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_186781.1	identified by similarity to GB:AAO05180.1
YP_186782.1	identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_186783.1	similar to YegS from E. coli
YP_186784.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_186785.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_186786.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_186787.1	identified by similarity to EGAD:107637; match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121
YP_186788.1	identified by similarity to GP:20522056; match to protein family HMM PF07537
YP_186789.1	identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_186790.1	identified by similarity to SP:Q53727; match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_186791.1	PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer
YP_186792.1	identified by match to protein family HMM PF01371
YP_186793.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_186794.1	identified by similarity to OMNI:SA1056
YP_186798.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_186799.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_186800.1	identified by match to protein family HMM PF02898
YP_186801.1	identified by similarity to EGAD:17359; similarity to EGAD:29700; match to protein family HMM PF00800; match to protein family HMM PF01842
YP_186803.1	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785
YP_186805.1	identified by match to protein family HMM PF00857
YP_186806.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_186808.1	identified by match to protein family HMM PF00171
YP_186809.1	identified by similarity to EGAD:107450
YP_186812.1	identified by match to protein family HMM PF03417
YP_186813.1	identified by similarity to GB:AAO05216.1
YP_186815.1	identified by similarity to GB:AAO05218.1
YP_186816.1	identified by similarity to GB:BAC14289.1
YP_186817.1	identified by similarity to GB:AAO05220.1
YP_186818.1	identified by match to protein family HMM PF00005
YP_186819.1	identified by similarity to GB:AAO05222.1
YP_186820.1	identified by match to protein family HMM PF00005
YP_186821.1	identified by match to protein family HMM PF00392
YP_186822.1	identified by similarity to GB:AAO05225.1
YP_186825.1	identified by similarity to GP:8648965
YP_186826.1	identified by similarity to OMNI:SA2003; match to protein family HMM PF03372
YP_186827.1	identified by match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_186828.1	identified by match to protein family HMM PF01117
YP_186829.1	identified by similarity to SP:P39887
YP_186830.1	identified by similarity to EGAD:22102; match to protein family HMM PF01497
YP_186831.1	identified by match to protein family HMM PF02386
YP_186832.1	identified by match to protein family HMM PF00583
YP_186834.1	identified by similarity to EGAD:101510; match to protein family HMM PF03592
YP_186835.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_186836.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_186837.1	identified by match to protein family HMM PF02517
YP_186838.1	identified by similarity to GP:8101009
YP_186839.1	identified by match to protein family HMM PF00881
YP_186840.1	identified by match to protein family HMM PF00795
YP_186841.1	Lyses erythrocytes and other mammalian cells
YP_186842.1	identified by match to protein family HMM PF04647
YP_186843.1	identified by similarity to EGAD:18902; match to protein family HMM PF05931
YP_186844.1	identified by match to protein family HMM PF02518
YP_186845.1	identified by similarity to EGAD:16137; match to protein family HMM PF00072; match to protein family HMM PF04397
YP_186846.1	identified by similarity to EGAD:129878; match to protein family HMM PF00294
YP_186847.1	identified by similarity to EGAD:20672; match to protein family HMM PF00251; match to protein family HMM TIGR01322
YP_186848.1	identified by similarity to EGAD:43207; match to protein family HMM PF00356; match to protein family HMM PF00532
YP_186849.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_186850.1	identified by match to protein family HMM PF01206
YP_186851.1	identified by match to protein family HMM PF04143
YP_186852.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_186853.1	identified by match to protein family HMM PF00005
YP_186854.1	identified by match to protein family HMM PF00488
YP_186855.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_186856.1	identified by similarity to PIR:E69786; match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_186857.1	identified by match to protein family HMM PF00814
YP_186858.1	identified by similarity to OMNI:NTL01BH0546; match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_186859.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_186860.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118
YP_186861.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small
YP_186862.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_186863.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_186864.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_186865.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_186866.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_186867.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_186868.1	identified by match to protein family HMM PF03926
YP_186869.1	identified by match to protein family HMM PF00575
YP_186870.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase
YP_186871.1	binds to sigma-B preventing the formation of an RNA polymerase holoenzyme
YP_186872.1	identified by similarity to SP:P95842; match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_186873.1	identified by similarity to GP:1729794; match to protein family HMM PF07228
YP_186874.1	identified by similarity to GP:10834755; match to protein family HMM PF02452
YP_186876.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_186877.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_186878.1	identified by match to protein family HMM PF03703
YP_186879.1	identified by match to protein family HMM PF03703
YP_186882.1	one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex
YP_186883.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_186884.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_186885.1	identified by match to protein family HMM TIGR02115
YP_186886.1	identified by similarity to EGAD:149594; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702
YP_186887.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_186888.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_186889.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_186890.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_186891.1	identified by match to protein family HMM PF01098
YP_186892.1	identified by similarity to GB:AAO05283.1
YP_186893.1	identified by similarity to GB:AAO05284.1; match to protein family HMM PF00403
YP_186894.1	identified by match to protein family HMM PF02583
YP_186895.1	identified by similarity to SP:O66043; match to protein family HMM PF00614
YP_186896.1	identified by similarity to GP:10175456; match to protein family HMM PF01966
YP_186898.1	identified by match to protein family HMM PF02096
YP_186899.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_186900.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_186901.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_186902.1	identified by similarity to EGAD:24145; match to protein family HMM PF03070
YP_186903.1	identified by match to protein family HMM PF06737
YP_186904.1	identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_186905.1	identified by similarity to GP:2735511
YP_186906.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_186907.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_186908.1	identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327
YP_186909.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_186910.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_186911.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_186912.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_186913.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_186914.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel
YP_186915.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_186916.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_186917.1	identified by similarity to GB:AAO05306.1
YP_186918.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_186919.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_186920.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_186921.1	identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440
YP_186922.1	identified by similarity to EGAD:30369; match to protein family HMM PF01451
YP_186923.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_186924.1	identified by match to protein family HMM TIGR00536
YP_186925.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_186926.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_186927.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_186928.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_186929.1	identified by match to protein family HMM PF00171
YP_186930.1	identified by similarity to EGAD:109282; match to protein family HMM PF01638
YP_186931.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_186932.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis
YP_186934.1	CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_186935.1	participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
YP_186936.1	identified by match to protein family HMM PF00583
YP_186937.1	catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A
YP_186938.1	identified by similarity to GB:AAO05328.1
YP_186939.1	identified by similarity to GB:AAO05329.1
YP_186940.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_186941.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_186943.1	Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway
YP_186944.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_186945.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_186946.1	identified by match to protein family HMM PF00210
YP_186947.1	identified by similarity to GP:10173467; match to protein family HMM PF04134
YP_186948.1	identified by similarity to GB:AAO05339.1
YP_186949.1	identified by similarity to GB:AAO05341.1
YP_186950.1	identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218
YP_186952.1	identified by similarity to GP:4126673; similarity to OMNI:SA2137; match to protein family HMM PF01022
YP_186953.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_186956.1	identified by similarity to GP:10174364; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_186957.1	identified by match to protein family HMM PF00005
YP_186958.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_186959.1	identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851
YP_186960.1	identified by match to protein family HMM PF00874
YP_186961.1	identified by similarity to SP:P17875; match to protein family HMM PF00359
YP_186962.1	identified by similarity to EGAD:16282; match to protein family HMM PF01232
YP_186963.1	identified by similarity to GP:5834649; match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_186964.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_186966.1	identified by similarity to EGAD:108364; match to protein family HMM PF02457; match to protein family HMM TIGR00159
YP_186967.1	identified by similarity to EGAD:14086; match to protein family HMM PF00491; match to protein family HMM TIGR01229
YP_186969.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_186970.1	identified by similarity to GB:AAO05399.1
YP_186971.1	identified by match to protein family HMM PF07690
YP_186972.1	identified by similarity to EGAD:38000; match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_186973.1	identified by match to protein family HMM PF01704
YP_186974.1	identified by match to protein family HMM PF04307
YP_186976.1	identified by similarity to GP:10176572; match to protein family HMM PF07670
YP_186977.1	identified by similarity to EGAD:7245; match to protein family HMM PF01032
YP_186978.1	identified by similarity to EGAD:23253; match to protein family HMM PF01032
YP_186979.1	identified by match to protein family HMM PF01497
YP_186980.1	identified by match to protein family HMM PF01168
YP_186981.1	identified by match to protein family HMM PF04183
YP_186982.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_186983.1	identified by match to protein family HMM PF04183
YP_186984.1	identified by similarity to EGAD:40949; match to protein family HMM PF03780
YP_186985.1	identified by similarity to GB:AAO05416.1
YP_186986.1	identified by similarity to GB:AAO05417.1
YP_186987.1	identified by similarity to EGAD:45763; match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_186988.1	identified by match to protein family HMM PF00107
YP_186989.1	identified by match to protein family HMM PF00107
YP_186990.1	identified by match to protein family HMM PF06028
YP_186991.1	catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside
YP_186992.1	identified by similarity to EGAD:22339; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853
YP_186993.1	identified by similarity to EGAD:18801; match to protein family HMM PF02255; match to protein family HMM TIGR00823
YP_186994.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources
YP_186995.1	catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP
YP_186996.1	catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate
YP_186997.1	catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization
YP_186999.1	identified by similarity to SP:P16644; match to protein family HMM PF00455
YP_187000.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_187003.1	identified by match to protein family HMM PF00248
YP_187004.1	identified by match to protein family HMM PF00376
YP_187005.1	identified by similarity to EGAD:42558; match to protein family HMM PF02278; match to protein family HMM PF02884
YP_187006.1	identified by match to protein family HMM PF01551
YP_187007.1	identified by match to protein family HMM TIGR01484
YP_187008.1	identified by match to protein family HMM PF03642
YP_187009.1	identified by similarity to EGAD:17067; match to protein family HMM PF03306; match to protein family HMM TIGR01252
YP_187010.1	catalyzes the formation of 2-acetolactate from pyruvate in stationary phase
YP_187016.1	forms a direct contact with the tRNA during translation
YP_187017.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_187018.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_187019.1	identified by match to protein family HMM PF02361
YP_187020.1	with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene
YP_187021.1	with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene
YP_187022.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_187023.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_187024.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_187025.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_187026.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_187027.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_187028.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_187029.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_187030.1	late assembly protein
YP_187031.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_187032.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_187033.1	binds 5S rRNA along with protein L5 and L25
YP_187034.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_187035.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_187036.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_187037.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_187038.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_187039.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_187040.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_187041.1	one of the stabilizing components for the large ribosomal subunit
YP_187042.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_187043.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_187044.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_187045.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_187046.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_187047.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_187048.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_187049.2	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_187050.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_187051.1	identified by similarity to GB:AAO05467.1
YP_187052.1	identified by match to protein family HMM PF00860
YP_187053.1	decatenates replicating daughter chromosomes
YP_187054.1	identified by match to protein family HMM PF00583
YP_187055.1	identified by match to protein family HMM PF06800
YP_187057.1	identified by match to protein family HMM PF03547
YP_187059.1	identified by similarity to GB:AAO05474.1
YP_187060.1	identified by match to protein family HMM PF00873
YP_187061.1	identified by match to protein family HMM PF02388
YP_187062.1	identified by similarity to GB:AAO05477.1
YP_187063.1	identified by match to protein family HMM PF01047
YP_187064.1	identified by match to protein family HMM PF07690
YP_187065.1	identified by similarity to OMNI:SA2258; match to protein family HMM TIGR01889
YP_187068.1	identified by similarity to EGAD:15818; match to protein family HMM PF04055; match to protein family HMM PF06463
YP_187069.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_187070.1	identified by similarity to GP:3955207; match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_187071.1	identified by similarity to SP:P30749; match to protein family HMM PF02391
YP_187072.1	identified by similarity to EGAD:107851; match to protein family HMM PF03205; match to protein family HMM TIGR00176
YP_187073.1	identified by similarity to GP:3955204; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_187074.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_187075.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_187076.1	identified by similarity to GP:3955201; match to protein family HMM PF00899; match to protein family HMM PF05237
YP_187077.1	identified by match to protein family HMM PF00005
YP_187078.1	identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_187079.1	identified by similarity to EGAD:13554; match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_187080.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_187081.1	identified by match to protein family HMM PF00583
YP_187082.1	identified by match to protein family HMM PF02632
YP_187083.1	identified by match to protein family HMM PF01156
YP_187084.1	identified by similarity to EGAD:22102; match to protein family HMM PF01497
YP_187085.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_187086.1	identified by match to protein family HMM PF03253
YP_187087.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_187088.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine
YP_187089.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_187090.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_187091.1	identified by similarity to EGAD:8726; match to protein family HMM PF01730
YP_187092.1	identified by similarity to EGAD:6421; match to protein family HMM PF02492; match to protein family HMM TIGR00101
YP_187093.1	identified by similarity to EGAD:7142; match to protein family HMM PF01774
YP_187094.1	identified by similarity to OMNI:SA2287; match to protein family HMM TIGR01889
YP_187096.1	identified by match to protein family HMM TIGR01889
YP_187097.1	identified by match to protein family HMM PF00165
YP_187098.1	identified by match to protein family HMM PF05257
YP_187099.1	identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931
YP_187100.1	identified by match to protein family HMM PF02317
YP_187102.1	identified by match to protein family HMM PF05257
YP_187103.1	Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor
YP_187104.1	identified by match to protein family HMM PF01360
YP_187105.1	identified by match to protein family HMM PF01832
YP_187106.1	identified by similarity to GB:AAO05523.1
YP_187108.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_187109.1	identified by similarity to EGAD:20070; match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_187110.1	identified by match to protein family HMM PF00459
YP_187113.1	identified by similarity to GP:10173173; match to protein family HMM PF02517
YP_187114.1	identified by similarity to GB:AAO05528.1
YP_187115.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_187116.1	identified by match to protein family HMM PF00324
YP_187117.1	identified by similarity to GB:AAO05534.1
YP_187120.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_187121.1	identified by match to protein family HMM PF01758
YP_187122.1	identified by similarity to GB:AAO05537.1
YP_187123.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02005
YP_187124.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_187125.1	identified by similarity to GB:AAO05542.1
YP_187126.1	identified by similarity to OMNI:VCA0193; match to protein family HMM PF03553
YP_187128.1	identified by match to protein family HMM PF00106
YP_187129.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_187130.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_187131.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_187132.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_187133.1	catalyzes resistance to fosfomycin by the addition of a thiol cofactor
YP_187134.1	catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate
YP_187135.1	identified by match to protein family HMM PF02517
YP_187136.1	catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_187137.1	identified by match to protein family HMM PF03473; match to protein family HMM PF03475
YP_187139.1	identified by match to protein family HMM PF01263
YP_187140.1	identified by match to protein family HMM PF02694
YP_187142.1	identified by match to protein family HMM PF00005
YP_187145.1	identified by similarity to EGAD:99518; match to protein family HMM PF02245; match to protein family HMM TIGR00567
YP_187146.1	identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210
YP_187147.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_187148.1	identified by match to protein family HMM PF01544
YP_187151.1	identified by similarity to EGAD:16024
YP_187152.1	identified by similarity to GB:AAO05571.1
YP_187153.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_187155.1	identified by match to protein family HMM PF00440
YP_187156.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_187159.1	identified by match to protein family HMM PF01047
YP_187160.1	identified by match to protein family HMM PF02698
YP_187161.1	identified by match to protein family HMM PF00005
YP_187162.1	identified by match to protein family HMM PF02687
YP_187163.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_187164.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_187165.1	identified by match to protein family HMM PF04397
YP_187167.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_187168.1	identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_187169.1	identified by similarity to GB:AAO05587.1
YP_187170.1	identified by similarity to GB:AAO05588.1
YP_187171.1	identified by match to protein family HMM PF00583
YP_187172.1	identified by match to protein family HMM PF00107
YP_187173.1	identified by match to protein family HMM PF00583
YP_187174.1	identified by match to protein family HMM PF00070
YP_187178.1	identified by match to protein family HMM PF00440
YP_187179.1	identified by match to protein family HMM PF01544
YP_187180.1	identified by similarity to EGAD:18969; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996
YP_187181.1	identified by similarity to GB:AAO05601.1
YP_187182.1	identified by match to protein family HMM PF00165
YP_187183.1	identified by similarity to EGAD:107318; match to protein family HMM PF01243
YP_187185.1	identified by similarity to GB:AAO05604.1
YP_187186.1	identified by similarity to EGAD:7647; match to protein family HMM PF00375
YP_187187.1	identified by similarity to GB:AAO05606.1
YP_187188.1	identified by match to protein family HMM PF01047
YP_187189.1	identified by match to protein family HMM PF00011
YP_187190.1	identified by similarity to EGAD:30454; match to protein family HMM PF07690
YP_187191.1	identified by match to protein family HMM PF00376
YP_187192.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_187193.1	identified by match to protein family HMM PF02518
YP_187194.1	identified by similarity to GB:AAO05612.1
YP_187195.1	identified by similarity to EGAD:30704; match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_187196.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_187197.1	identified by similarity to EGAD:16236; similarity to EGAD:30703; match to protein family HMM TIGR01660
YP_187198.1	identified by similarity to EGAD:30702; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580
YP_187199.1	identified by similarity to GP:4433641; match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_187200.1	identified by similarity to EGAD:30823; match to protein family HMM PF00355
YP_187201.1	identified by similarity to EGAD:30822; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324
YP_187202.1	identified by similarity to GP:4433637
YP_187203.1	identified by match to protein family HMM PF00583
YP_187204.1	identified by match to protein family HMM PF01226
YP_187205.1	identified by similarity to GP:3294247
YP_187206.1	identified by match to protein family HMM PF01297
YP_187207.1	identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116
YP_187208.1	identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552
YP_187210.1	identified by similarity to EGAD:109043; match to protein family HMM PF01323
YP_187211.1	identified by similarity to GB:AAO05629.1
YP_187212.1	identified by similarity to GP:4574233; match to protein family HMM PF02388
YP_187213.1	identified by match to protein family HMM PF00005
YP_187214.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_187215.1	identified by match to protein family HMM PF00497
YP_187216.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_187217.1	identified by similarity to GB:AAO05635.1
YP_187218.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_187219.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_187220.1	identified by similarity to OMNI:SA2418; match to protein family HMM PF02216
YP_187221.1	identified by similarity to OMNI:SA2419; match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_187223.1	identified by similarity to SP:P31716; match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_187224.1	identified by similarity to SP:P31715; match to protein family HMM PF01117; match to protein family HMM TIGR01002
YP_187225.1	identified by similarity to EGAD:19942
YP_187226.1	catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A
YP_187227.1	identified by similarity to EGAD:45705; match to protein family HMM PF00155
YP_187228.1	catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine
YP_187229.1	identified by similarity to EGAD:45704; match to protein family HMM PF00202; match to protein family HMM TIGR00508
YP_187230.1	identified by similarity to SP:Q58695; match to protein family HMM TIGR00347
YP_187232.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_187233.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_187235.1	identified by similarity to GP:13162065; match to protein family HMM PF04138
YP_187236.1	identified by similarity to OMNI:NTL01BH0556; match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_187237.1	identified by similarity to GB:AAO05641.1
YP_187238.1	identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_187239.1	identified by match to protein family HMM PF06445
YP_187240.1	identified by similarity to GB:AAO05643.1
YP_187241.1	identified by match to protein family HMM PF00149
YP_187242.1	identified by match to protein family HMM PF00324
YP_187243.1	identified by match to protein family HMM PF00999
YP_187245.1	identified by similarity to GP:9246437; match to protein family HMM PF00144
YP_187247.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_187248.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_187249.1	identified by match to protein family HMM PF00528
YP_187250.1	identified by match to protein family HMM PF04069
YP_187251.1	identified by match to protein family HMM PF00528
YP_187252.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_187254.1	identified by similarity to GP:4514322
YP_187256.1	identified by match to protein family HMM PF00324
YP_187257.1	identified by similarity to SP:P37967; match to protein family HMM PF00135
YP_187258.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_187259.1	identified by similarity to SP:P77307; match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_187260.1	identified by match to protein family HMM PF00005
YP_187261.1	identified by similarity to EGAD:40297; match to protein family HMM PF05343
YP_187262.1	identified by match to protein family HMM TIGR02116
YP_187263.1	identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552
YP_187265.1	identified by match to protein family HMM PF06998
YP_187266.1	identified by match to protein family HMM PF01645
YP_187268.1	identified by similarity to GP:10174698; match to protein family HMM PF07690
YP_187269.1	identified by match to protein family HMM PF00005
YP_187270.1	identified by match to protein family HMM PF00005
YP_187271.1	identified by match to protein family HMM PF00528
YP_187272.1	identified by match to protein family HMM PF00528
YP_187273.1	identified by match to protein family HMM PF00496; match to protein family HMM TIGR02294
YP_187275.1	identified by similarity to OMNI:NTL01BH2075
YP_187276.1	identified by similarity to GP:10174690
YP_187279.1	identified by match to protein family HMM PF03806
YP_187280.1	identified by match to protein family HMM TIGR00778
YP_187283.1	identified by similarity to GB:AAO03749.1; match to protein family HMM PF07252
YP_187284.1	identified by match to protein family HMM PF00106
YP_187285.1	identified by similarity to GB:AAO05678.1
YP_187286.1	identified by similarity to GB:AAO05679.1
YP_187288.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_187292.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_187293.1	identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742
YP_187294.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_187295.1	identified by match to protein family HMM PF00293
YP_187296.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_187299.1	identified by match to protein family HMM PF07690
YP_187300.1	identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_187301.1	identified by match to protein family HMM TIGR01889
YP_187302.1	identified by similarity to OMNI:SA2507; match to protein family HMM TIGR01889
YP_187303.1	identified by similarity to EGAD:16704; match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_187304.1	identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_187306.1	identified by similarity to SP:P14738; match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_187308.1	identified by similarity to EGAD:19179; match to protein family HMM PF02447; match to protein family HMM TIGR00791
YP_187309.1	identified by similarity to EGAD:22614; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314
YP_187310.1	identified by similarity to EGAD:17516; match to protein family HMM PF00392
YP_187311.1	identified by match to protein family HMM PF00376
YP_187312.1	identified by similarity to EGAD:14115; match to protein family HMM PF04607
YP_187314.1	identified by match to protein family HMM PF05976
YP_187315.1	identified by match to protein family HMM PF07690
YP_187316.1	identified by match to protein family HMM PF00597
YP_187317.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_187318.1	identified by match to protein family HMM PF01047
YP_187319.1	identified by match to protein family HMM PF00005
YP_187320.1	identified by similarity to EGAD:37656; match to protein family HMM PF06874
YP_187323.1	identified by similarity to GP:10174794; match to protein family HMM PF00903
YP_187324.1	identified by match to protein family HMM PF01047
YP_187326.1	identified by match to protein family HMM PF00903
YP_187327.1	identified by match to protein family HMM PF00881
YP_187328.1	catalyzes the formation of pyruvate from lactate
YP_187329.1	identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_187330.1	identified by match to protein family HMM PF00005
YP_187332.1	identified by similarity to GP:5726436; match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_187333.1	identified by match to protein family HMM PF00583
YP_187336.1	identified by similarity to EGAD:154938; match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_187337.1	identified by similarity to SP:P33074; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_187338.1	identified by similarity to EGAD:33437
YP_187340.1	identified by similarity to GP:10173339; match to protein family HMM PF00892
YP_187341.1	identified by similarity to EGAD:16024
YP_187343.1	identified by similarity to OMNI:VC1938
YP_187344.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002
YP_187345.1	catalyzes the formation of acetyl phosphate from pyruvate
YP_187346.1	identified by match to protein family HMM PF04172
YP_187347.1	identified by match to protein family HMM PF03788
YP_187348.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_187349.1	identified by similarity to GB:AAO05749.1
YP_187350.1	identified by match to protein family HMM PF05257
YP_187352.1	identified by similarity to EGAD:9852; match to protein family HMM PF00368; match to protein family HMM TIGR00532
YP_187353.1	identified by similarity to GP:9937361; match to protein family HMM PF01154; match to protein family HMM TIGR01835
YP_187354.1	identified by similarity to EGAD:29038; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_187355.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151
YP_187356.1	identified by similarity to EGAD:7439; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437
YP_187357.1	identified by match to protein family HMM PF04023
YP_187358.1	identified by match to protein family HMM PF03176
YP_187361.1	catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate
YP_187362.1	identified by similarity to EGAD:12452; match to protein family HMM PF00132
YP_187363.1	identified by similarity to GB:AAO05760.1
YP_187364.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_187365.1	identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003
YP_187366.1	catalyzes the formation of pyruvate from lactate
YP_187367.1	identified by match to protein family HMM PF00155
YP_187368.1	identified by match to protein family HMM PF01593
YP_187369.1	identified by similarity to GP:2224841; match to protein family HMM PF00494
YP_187370.1	identified by match to protein family HMM PF00535
YP_187371.1	identified by similarity to EGAD:16690; match to protein family HMM PF01593
YP_187373.1	identified by match to protein family HMM PF05257
YP_187374.1	identified by match to protein family HMM PF01757
YP_187375.1	identified by match to protein family HMM PF00583
YP_187376.1	identified by match to protein family HMM PF06737
YP_187380.1	identified by match to protein family HMM PF05979
YP_187381.1	identified by match to protein family HMM PF00903
YP_187382.1	identified by similarity to EGAD:19015
YP_187384.1	identified by match to protein family HMM PF00440
YP_187385.1	identified by match to protein family HMM PF00106
YP_187387.1	identified by match to protein family HMM PF04909
YP_187388.1	identified by match to protein family HMM PF00561
YP_187389.1	identified by similarity to EGAD:156097; match to protein family HMM PF02492; match to protein family HMM PF07683
YP_187390.1	identified by match to protein family HMM PF07670
YP_187392.1	identified by similarity to GP:10173595
YP_187395.1	identified by similarity to GP:22295547; match to protein family HMM PF03881
YP_187396.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_187398.1	identified by match to protein family HMM PF02677
YP_187401.1	identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976
YP_187402.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_187403.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_187404.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_187405.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_187406.1	identified by similarity to EGAD:8473; match to protein family HMM PF03306; match to protein family HMM TIGR01252
YP_187407.1	identified by similarity to EGAD:16887; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771
YP_187408.1	identified by match to protein family HMM PF00324
YP_187409.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_187411.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis
YP_187412.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_187413.1	identified by similarity to EGAD:18603; match to protein family HMM PF00501
YP_187414.1	identified by match to protein family HMM PF03992
YP_187415.1	identified by similarity to GB:AAO05805.1; match to protein family HMM PF06855
YP_187416.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_187417.1	identified by similarity to EGAD:97843; match to protein family HMM PF00171; match to protein family HMM TIGR01804
YP_187419.1	identified by similarity to GP:4574119
YP_187421.1	identified by similarity to EGAD:45763; match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_187422.1	identified by similarity to GP:4098082
YP_187423.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_187424.1	identified by match to protein family HMM PF03600; match to protein family HMM TIGR00784
YP_187426.1	catalyzes the formation of siroheme from precorrin-2
YP_187427.1	identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931
YP_187429.1	identified by similarity to EGAD:45646; match to protein family HMM PF00255
YP_187431.1	identified by match to protein family HMM PF02687
YP_187432.1	identified by match to protein family HMM PF00005
YP_187433.1	identified by match to protein family HMM PF02518
YP_187434.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_187436.1	identified by match to protein family HMM PF00245
YP_187437.1	identified by similarity to GB:AAO05842.1
YP_187439.1	identified by similarity to GP:7453516; similarity to OMNI:NTL01LL1811; match to protein family HMM PF00756
YP_187440.1	identified by similarity to GP:3393011; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168
YP_187441.1	identified by similarity to GP:8894540
YP_187442.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_187443.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_187444.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_187445.1	catalyzes the degradation of arginine to citruline and ammonia
YP_187446.1	identified by similarity to EGAD:18464; match to protein family HMM PF02863
YP_187447.1	identified by similarity to SP:P81177; match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_187449.1	identified by similarity to GB:AAO05863.1
YP_187450.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874
YP_187451.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427
YP_187452.1	identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218
YP_187453.1	identified by match to protein family HMM PF01061
YP_187454.1	identified by similarity to EGAD:7341; match to protein family HMM PF01832; match to protein family HMM PF05257
YP_187455.1	identified by match to protein family HMM PF00857
YP_187458.1	identified by match to protein family HMM PF00534
YP_187459.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins
YP_187460.1	identified by similarity to GB:AAK17000.1
YP_187461.1	identified by similarity to GB:AAK16999.1
YP_187462.1	identified by similarity to GB:AAK16998.1
YP_187463.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_187464.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05345; match to protein family HMM TIGR01167
YP_187470.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae
YP_187471.1	identified by match to protein family HMM PF00583
YP_187472.1	identified by match to protein family HMM PF02811
YP_187473.1	identified by similarity to EGAD:13148; match to protein family HMM TIGR01007
YP_187474.1	identified by match to protein family HMM PF02706
YP_187475.1	identified by similarity to GP:5813900; similarity to OMNI:SA2688; match to protein family HMM PF00440
YP_187476.1	predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein
YP_187478.1	identified by match to protein family HMM PF01522
YP_187480.1	identified by similarity to SP:Q02510; similarity to EGAD:17843; match to protein family HMM PF04650; match to protein family HMM TIGR01168
YP_187482.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_187483.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_187484.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_187485.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_187486.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_187487.1	identified by match to protein family HMM PF00155
YP_187488.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_187489.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_187490.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_187493.1	identified by match to protein family HMM PF02361
YP_187494.1	identified by match to protein family HMM PF00005
YP_187495.1	identified by match to protein family HMM PF07155
YP_187496.1	identified by similarity to EGAD:167429; match to protein family HMM PF01887
YP_187497.1	identified by match to protein family HMM PF04264
YP_187498.1	identified by similarity to GP:6441050
YP_187499.1	identified by match to protein family HMM PF00581
YP_187500.1	catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline
YP_187502.1	identified by match to protein family HMM PF03551
YP_187504.1	identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785
YP_187505.1	identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688
YP_187507.1	identified by similarity to EGAD:33273; match to protein family HMM PF03824; match to protein family HMM TIGR00802
YP_187508.1	identified by match to protein family HMM PF00797
YP_187510.1	identified by match to protein family HMM PF00005
YP_187511.1	identified by match to protein family HMM PF02687
YP_187513.1	identified by match to protein family HMM PF00665
YP_187517.1	identified by match to protein family HMM PF00313
YP_187518.1	identified by match to protein family HMM PF01381
YP_187519.1	identified by similarity to GB:AAO06054.1
YP_187520.1	identified by similarity to GB:AAO06055.1
YP_187521.1	identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_187522.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_187523.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_187524.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_187525.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_187526.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_184747.1	identified by similarity to EGAD:10909; match to protein family HMM PF02486
YP_184748.1	identified by similarity to EGAD:6626; match to protein family HMM PF07690
YP_184749.1	identified by similarity to EGAD:21785; match to protein family HMM PF01076