-- dump date 20140620_073534 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 93062000001 SEQ_END SEQ_END NC_002951.2 2809422 2809422 DR NC_002951.2; contig end 2809422..2809422 Staphylococcus aureus subsp. aureus COL 93062000002 SEQ_END SEQ_END NC_006629.2 4440 4440 DR NC_006629.2; contig end 4440..4440 Staphylococcus aureus subsp. aureus COL YP_184912.1 CDS dnaA NC_002951.2 544 1905 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 544..1905 Staphylococcus aureus subsp. aureus COL 3236025 YP_184913.1 CDS dnaN NC_002951.2 2183 3316 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2183..3316 Staphylococcus aureus subsp. aureus COL 3236026 YP_184914.1 CDS SACOL0003 NC_002951.2 3697 3942 D hypothetical protein 3697..3942 Staphylococcus aureus subsp. aureus COL 3236184 YP_184915.1 CDS recF NC_002951.2 3939 5051 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3939..5051 Staphylococcus aureus subsp. aureus COL 3236185 YP_184916.1 CDS gyrB NC_002951.2 5061 6995 D identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase, B subunit 5061..6995 Staphylococcus aureus subsp. aureus COL 3236186 YP_184917.1 CDS gyrA NC_002951.2 7032 9695 D identified by similarity to SP:P20831; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase, A subunit 7032..9695 Staphylococcus aureus subsp. aureus COL 3236187 YP_184918.1 CDS SACOL0007 NC_002951.2 9782 10483 R identified by similarity to EGAD:21908; match to protein family HMM PF01256; hypothetical protein complement(9782..10483) Staphylococcus aureus subsp. aureus COL 3236407 YP_184919.1 CDS hutH NC_002951.2 10920 12434 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 10920..12434 Staphylococcus aureus subsp. aureus COL 3236408 YP_184920.1 CDS serS NC_002951.2 12813 14099 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 12813..14099 Staphylococcus aureus subsp. aureus COL 3236409 YP_184921.1 CDS SACOL0010 NC_002951.2 14749 15444 D identified by match to protein family HMM PF03591; hypothetical protein 14749..15444 Staphylococcus aureus subsp. aureus COL 3236410 YP_184922.1 CDS SACOL0011 NC_002951.2 15441 15770 D identified by similarity to GB:AAO03607.1; match to protein family HMM PF06063; hypothetical protein 15441..15770 Staphylococcus aureus subsp. aureus COL 3236194 YP_184923.1 CDS SACOL0012 NC_002951.2 16112 17101 D identified by match to protein family HMM PF00561; homoserine O-acetyltransferase 16112..17101 Staphylococcus aureus subsp. aureus COL 3236195 YP_184924.1 CDS SACOL0013 NC_002951.2 17407 18330 D hypothetical protein 17407..18330 Staphylococcus aureus subsp. aureus COL 3236196 YP_184925.1 CDS SACOL0014 NC_002951.2 18345 20312 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; hypothetical protein 18345..20312 Staphylococcus aureus subsp. aureus COL 3236197 YP_184926.1 CDS rplI NC_002951.2 20309 20755 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 20309..20755 Staphylococcus aureus subsp. aureus COL 3236535 YP_184927.1 CDS dnaB NC_002951.2 20787 22187 D identified by similarity to EGAD:21924; match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 20787..22187 Staphylococcus aureus subsp. aureus COL 3236536 YP_184928.1 CDS SACOL0017 NC_002951.2 22263 22355 D hypothetical protein 22263..22355 Staphylococcus aureus subsp. aureus COL 3236537 YP_184929.1 CDS purA NC_002951.2 22465 23748 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 22465..23748 Staphylococcus aureus subsp. aureus COL 3236538 YP_184930.1 CDS yycF NC_002951.2 24952 25653 D identified by similarity to GP:5114230; similarity to OMNI:SA0019; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator YycF 24952..25653 Staphylococcus aureus subsp. aureus COL 3236559 YP_184931.1 CDS yycG NC_002951.2 25666 27492 D identified by similarity to GP:5114231; similarity to OMNI:SA0020; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase YycG 25666..27492 Staphylococcus aureus subsp. aureus COL 3236560 YP_184932.1 CDS yycH NC_002951.2 27485 28819 D identified by similarity to GP:1064812; match to protein family HMM PF07435; hypothetical protein 27485..28819 Staphylococcus aureus subsp. aureus COL 3236561 YP_184933.1 CDS yycI NC_002951.2 28820 29608 D hypothetical protein 28820..29608 Staphylococcus aureus subsp. aureus COL 3236735 YP_184934.1 CDS yycJ NC_002951.2 29998 30798 D identified by match to protein family HMM PF00753; metallo-beta-lactamase YycJ 29998..30798 Staphylococcus aureus subsp. aureus COL 3236736 YP_184935.1 CDS SACOL0024 NC_002951.2 31026 33344 D identified by match to protein family HMM PF00149; match to protein family HMM PF00746; match to protein family HMM PF02872; match to protein family HMM TIGR01167; 5'-nucleotidase 31026..33344 Staphylococcus aureus subsp. aureus COL 3236737 YP_184936.1 CDS SACOL0025 NC_002951.2 33576 34055 R hypothetical protein complement(33576..34055) Staphylococcus aureus subsp. aureus COL 3236738 YP_184937.1 CDS SACOL0026 NC_002951.2 34372 35667 D hypothetical protein 34372..35667 Staphylococcus aureus subsp. aureus COL 3236745 YP_184938.1 CDS SACOL0027 NC_002951.2 36082 36321 D hypothetical protein 36082..36321 Staphylococcus aureus subsp. aureus COL 3236746 YP_184939.1 CDS SACOL0028 NC_002951.2 36353 37027 R identified by similarity to SP:P19380; match to protein family HMM PF00665; IS431mec, transposase complement(36353..37027) Staphylococcus aureus subsp. aureus COL 3236747 YP_184940.1 CDS SACOL0029 NC_002951.2 37285 37452 D identified by similarity to GP:9937361; HMG-CoA synthase, truncation 37285..37452 Staphylococcus aureus subsp. aureus COL 3236748 YP_184941.1 CDS SACOL0030 NC_002951.2 37550 37780 D hypothetical protein 37550..37780 Staphylococcus aureus subsp. aureus COL 3237118 YP_184942.1 CDS SACOL0031 NC_002951.2 38329 39072 D identified by similarity to EGAD:9350; similarity to EGAD:9938; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 38329..39072 Staphylococcus aureus subsp. aureus COL 3236761 YP_184943.1 CDS maoC NC_002951.2 39169 39597 D identified by match to protein family HMM PF01575; MaoC domain-containing protein 39169..39597 Staphylococcus aureus subsp. aureus COL 3236762 YP_184944.1 CDS mecA NC_002951.2 39643 41649 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223; penicillin-binding protein 2' complement(39643..41649) Staphylococcus aureus subsp. aureus COL 3236763 YP_184945.1 CDS mecR1 NC_002951.2 41749 42735 D identified by similarity to EGAD:24355; match to protein family HMM PF05569; methicillin-resistance MecR1 regulatory protein 41749..42735 Staphylococcus aureus subsp. aureus COL 3236764 YP_184946.1 CDS SACOL0035 NC_002951.2 42707 42967 D hypothetical protein 42707..42967 Staphylococcus aureus subsp. aureus COL 3236765 YP_184947.1 CDS SACOL0036 NC_002951.2 42958 44481 R identified by match to protein family HMM PF01609; IS1272 transposase complement(42958..44481) Staphylococcus aureus subsp. aureus COL 3236766 YP_184948.1 CDS SACOL0037 NC_002951.2 44617 45123 R identified by similarity to GB:AAO03627.1; hypothetical protein complement(44617..45123) Staphylococcus aureus subsp. aureus COL 3237004 YP_184949.1 CDS SACOL0038 NC_002951.2 45138 45449 R identified by match to protein family HMM PF06124; hypothetical protein complement(45138..45449) Staphylococcus aureus subsp. aureus COL 3237005 YP_184950.1 CDS SACOL0039 NC_002951.2 45451 45543 R hypothetical protein complement(45451..45543) Staphylococcus aureus subsp. aureus COL 3237006 YP_184951.1 CDS SACOL0040 NC_002951.2 45536 45886 R identified by similarity to GB:AAO03652.1; match to protein family HMM PF06106; hypothetical protein complement(45536..45886) Staphylococcus aureus subsp. aureus COL 3237007 YP_184952.1 CDS ccrA1 NC_002951.2 47998 49347 R identified by match to protein family HMM PF00239; match to protein family HMM PF07508; cassette chromosome recombinase A1 complement(47998..49347) Staphylococcus aureus subsp. aureus COL 3237009 YP_184953.1 CDS SACOL0043 NC_002951.2 49535 51304 R identified by match to protein family HMM PF06048; hypothetical protein complement(49535..51304) Staphylococcus aureus subsp. aureus COL 3236995 YP_184954.1 CDS SACOL0044 NC_002951.2 51304 51600 R identified by match to protein family HMM PF07205; hypothetical protein complement(51304..51600) Staphylococcus aureus subsp. aureus COL 3236996 YP_184955.1 CDS SACOL0045 NC_002951.2 51771 53348 D hypothetical protein 51771..53348 Staphylococcus aureus subsp. aureus COL 3236997 YP_184956.1 CDS SACOL0046 NC_002951.2 53428 54756 R identified by match to protein family HMM PF00581; match to protein family HMM PF00753; metallo-beta-lactamase complement(53428..54756) Staphylococcus aureus subsp. aureus COL 3236998 YP_184957.1 CDS SACOL0047 NC_002951.2 54775 55842 R identified by match to protein family HMM PF00581; match to protein family HMM PF01206; hypothetical protein complement(54775..55842) Staphylococcus aureus subsp. aureus COL 3236999 YP_184958.1 CDS SACOL0048 NC_002951.2 55981 56241 D identified by match to protein family HMM PF02583; hypothetical protein 55981..56241 Staphylococcus aureus subsp. aureus COL 3237000 YP_184959.1 CDS SACOL0049 NC_002951.2 56265 56996 D identified by match to protein family HMM PF01925; hypothetical protein 56265..56996 Staphylococcus aureus subsp. aureus COL 3237001 YP_184960.1 CDS pls NC_002951.2 57212 61858 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; methicillin-resistant surface protein 57212..61858 Staphylococcus aureus subsp. aureus COL 3237002 YP_184961.1 CDS SACOL0051 NC_002951.2 61982 63598 D hypothetical protein 61982..63598 Staphylococcus aureus subsp. aureus COL 3236891 YP_184962.1 CDS SACOL0052 NC_002951.2 63758 65269 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(63758..65269) Staphylococcus aureus subsp. aureus COL 3236892 YP_184963.1 CDS SACOL0057 NC_002951.2 68407 68499 D hypothetical protein 68407..68499 Staphylococcus aureus subsp. aureus COL 3236894 YP_184964.1 CDS SACOL0058 NC_002951.2 68646 70391 D hypothetical protein 68646..70391 Staphylococcus aureus subsp. aureus COL 3236895 YP_184965.1 CDS SACOL0059 NC_002951.2 70485 70937 R hypothetical protein complement(70485..70937) Staphylococcus aureus subsp. aureus COL 3236987 YP_184966.1 CDS SACOL0061 NC_002951.2 71152 71907 R identified by match to protein family HMM PF01925; hypothetical protein complement(71152..71907) Staphylococcus aureus subsp. aureus COL 3236988 YP_184967.1 CDS SACOL0062 NC_002951.2 71907 72167 R identified by match to protein family HMM PF02583; hypothetical protein complement(71907..72167) Staphylococcus aureus subsp. aureus COL 3236883 YP_184968.1 CDS SACOL0063 NC_002951.2 72304 73371 D identified by match to protein family HMM PF00581; match to protein family HMM PF01206; hypothetical protein 72304..73371 Staphylococcus aureus subsp. aureus COL 3236884 YP_184969.1 CDS SACOL0064 NC_002951.2 73402 74736 D identified by match to protein family HMM PF00581; match to protein family HMM PF00753; metallo-beta-lactamase 73402..74736 Staphylococcus aureus subsp. aureus COL 3236885 YP_184970.1 CDS SACOL0065 NC_002951.2 74755 75948 D hypothetical protein 74755..75948 Staphylococcus aureus subsp. aureus COL 3236886 YP_184971.1 CDS SACOL0066 NC_002951.2 76215 76316 R identified by similarity to OMNI:NTL01BH0416; hypothetical protein complement(76215..76316) Staphylococcus aureus subsp. aureus COL 3236887 YP_184972.1 CDS SACOL0067 NC_002951.2 76615 77547 R identified by similarity to EGAD:108206; match to protein family HMM PF01207; hypothetical protein complement(76615..77547) Staphylococcus aureus subsp. aureus COL 3236888 YP_184973.1 CDS SACOL0068 NC_002951.2 77910 78113 D hypothetical protein 77910..78113 Staphylococcus aureus subsp. aureus COL 3236889 YP_184974.1 CDS SACOL0069 NC_002951.2 78162 78458 D identified by match to protein family HMM PF04993; hypothetical protein 78162..78458 Staphylococcus aureus subsp. aureus COL 3236890 YP_184975.1 CDS SACOL0070 NC_002951.2 78530 79750 R identified by match to protein family HMM PF07690; permease complement(78530..79750) Staphylococcus aureus subsp. aureus COL 3236876 YP_184976.1 CDS SACOL0071 NC_002951.2 79743 80204 R identified by similarity to EGAD:107983; hypothetical protein complement(79743..80204) Staphylococcus aureus subsp. aureus COL 3236877 YP_184977.1 CDS SACOL0072 NC_002951.2 80406 81266 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hypothetical protein 80406..81266 Staphylococcus aureus subsp. aureus COL 3236878 YP_184978.1 CDS SACOL0073 NC_002951.2 81621 82154 R hypothetical protein complement(81621..82154) Staphylococcus aureus subsp. aureus COL 3236879 YP_184979.1 CDS SACOL0074 NC_002951.2 82254 82988 D identified by match to protein family HMM PF00126; hypothetical protein 82254..82988 Staphylococcus aureus subsp. aureus COL 3236880 YP_184980.1 CDS SACOL0075 NC_002951.2 83422 84024 D hypothetical protein 83422..84024 Staphylococcus aureus subsp. aureus COL 3236881 YP_184981.1 CDS SACOL0076 NC_002951.2 84291 87443 D hypothetical protein 84291..87443 Staphylococcus aureus subsp. aureus COL 3236882 YP_184982.1 CDS SACOL0077 NC_002951.2 87500 87982 D hypothetical protein 87500..87982 Staphylococcus aureus subsp. aureus COL 3236867 YP_184983.1 CDS plc NC_002951.2 88187 89173 D identified by similarity to EGAD:20792; match to protein family HMM PF00388; 1-phosphatidylinositol phosphodiesterase 88187..89173 Staphylococcus aureus subsp. aureus COL 3236868 YP_184984.1 CDS SACOL0079 NC_002951.2 89394 90164 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 89394..90164 Staphylococcus aureus subsp. aureus COL 3236869 YP_184985.1 CDS SACOL0080 NC_002951.2 90216 90986 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 90216..90986 Staphylococcus aureus subsp. aureus COL 3236870 YP_184986.1 CDS SACOL0081 NC_002951.2 91050 91214 D hypothetical protein 91050..91214 Staphylococcus aureus subsp. aureus COL 3236871 YP_184987.1 CDS SACOL0082 NC_002951.2 91227 91823 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 91227..91823 Staphylococcus aureus subsp. aureus COL 3236872 YP_184988.1 CDS SACOL0083 NC_002951.2 91890 92657 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; tandem lipoprotein 91890..92657 Staphylococcus aureus subsp. aureus COL 3236873 YP_184989.1 CDS SACOL0084 NC_002951.2 92790 94988 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 92790..94988 Staphylococcus aureus subsp. aureus COL 3236874 YP_184990.1 CDS SACOL0085 NC_002951.2 95139 96317 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 95139..96317 Staphylococcus aureus subsp. aureus COL 3236859 YP_184991.1 CDS SACOL0086 NC_002951.2 96319 97707 D identified by match to protein family HMM PF07690; drug transporter 96319..97707 Staphylococcus aureus subsp. aureus COL 3236860 YP_184992.1 CDS SACOL0087 NC_002951.2 97875 97982 D hypothetical protein 97875..97982 Staphylococcus aureus subsp. aureus COL 3236861 YP_184993.1 CDS SACOL0088 NC_002951.2 98200 99861 R identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi cotransporter family protein complement(98200..99861) Staphylococcus aureus subsp. aureus COL 3236862 YP_184994.1 CDS SACOL0089 NC_002951.2 100187 101962 R in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen complement(100187..101962) Staphylococcus aureus subsp. aureus COL 3236863 YP_184995.1 CDS SACOL0090 NC_002951.2 102136 103008 R identified by match to protein family HMM PF00892; integral membrane domain-containing protein complement(102136..103008) Staphylococcus aureus subsp. aureus COL 3236864 YP_184996.1 CDS SACOL0091 NC_002951.2 103121 104518 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 103121..104518 Staphylococcus aureus subsp. aureus COL 3236865 YP_184997.1 CDS SACOL0092 NC_002951.2 104708 105181 D hypothetical protein 104708..105181 Staphylococcus aureus subsp. aureus COL 3236866 YP_184998.1 CDS SACOL0093 NC_002951.2 105443 107035 D identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 105443..107035 Staphylococcus aureus subsp. aureus COL 3236852 YP_184999.1 CDS spa NC_002951.2 107364 108890 R identified by similarity to SP:P02976; match to protein family HMM PF00746; match to protein family HMM PF01476; match to protein family HMM PF02216; match to protein family HMM PF03373; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; immunoglobulin G binding protein A precursor complement(107364..108890) Staphylococcus aureus subsp. aureus COL 3236853 YP_185000.1 CDS sarS NC_002951.2 109311 110063 R identified by similarity to OMNI:SA0096; match to protein family HMM TIGR01889; accessory regulator S complement(109311..110063) Staphylococcus aureus subsp. aureus COL 3236854 YP_185001.1 CDS sirC NC_002951.2 110432 111430 R identified by match to protein family HMM PF01032; iron compound ABC transporter permease SirC complement(110432..111430) Staphylococcus aureus subsp. aureus COL 3236855 YP_185002.1 CDS sirB NC_002951.2 111427 112422 R identified by similarity to EGAD:9723; match to protein family HMM PF01032; iron compound ABC transporter permease SirB complement(111427..112422) Staphylococcus aureus subsp. aureus COL 3236856 YP_185003.1 CDS sirA NC_002951.2 112438 113430 R identified by similarity to EGAD:22102; match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein SirA complement(112438..113430) Staphylococcus aureus subsp. aureus COL 3236857 YP_185004.1 CDS SACOL0100 NC_002951.2 113694 114641 D identified by similarity to EGAD:101781; match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase 113694..114641 Staphylococcus aureus subsp. aureus COL 3236858 YP_185005.1 CDS SACOL0101 NC_002951.2 114650 115648 D identified by match to protein family HMM PF02423; ornithine cyclodeaminase 114650..115648 Staphylococcus aureus subsp. aureus COL 3236840 YP_185006.1 CDS SACOL0102 NC_002951.2 115669 117423 D identified by similarity to EGAD:97400; match to protein family HMM PF04183; IucC family siderophore biosynthesis protein 115669..117423 Staphylococcus aureus subsp. aureus COL 3236841 YP_185007.1 CDS SACOL0103 NC_002951.2 117416 118672 D identified by similarity to EGAD:9939; match to protein family HMM PF00083; match to protein family HMM PF07690; drug transporter 117416..118672 Staphylococcus aureus subsp. aureus COL 3236842 YP_185008.1 CDS SACOL0104 NC_002951.2 118662 120398 D identified by match to protein family HMM PF04183; IucA family siderophore biosynthesis protein 118662..120398 Staphylococcus aureus subsp. aureus COL 3236843 YP_185009.1 CDS SACOL0105 NC_002951.2 120379 122157 D identified by match to protein family HMM PF04183; IucC family siderophore biosynthesis protein 120379..122157 Staphylococcus aureus subsp. aureus COL 3236844 YP_185010.1 CDS SACOL0106 NC_002951.2 122132 122908 D identified by match to protein family HMM PF03328; HPCH/HPAI aldolase 122132..122908 Staphylococcus aureus subsp. aureus COL 3236845 YP_185011.1 CDS SACOL0107 NC_002951.2 122908 124110 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; pyridoxal-dependent decarboxylase 122908..124110 Staphylococcus aureus subsp. aureus COL 3236846 YP_185012.1 CDS SACOL0108 NC_002951.2 124114 124878 D hypothetical protein 124114..124878 Staphylococcus aureus subsp. aureus COL 3236847 YP_185013.1 CDS SACOL0109 NC_002951.2 125074 125481 D hypothetical protein 125074..125481 Staphylococcus aureus subsp. aureus COL 3236832 YP_185014.1 CDS SACOL0110 NC_002951.2 125531 126157 D hypothetical protein 125531..126157 Staphylococcus aureus subsp. aureus COL 3236833 YP_185015.1 CDS SACOL0111 NC_002951.2 126369 127145 D identified by match to protein family HMM PF00106; acetoin reductase 126369..127145 Staphylococcus aureus subsp. aureus COL 3236834 YP_185016.1 CDS SACOL0112 NC_002951.2 127289 127411 D hypothetical protein 127289..127411 Staphylococcus aureus subsp. aureus COL 3236835 YP_185017.1 CDS SACOL0113 NC_002951.2 127490 128461 D identified by match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 127490..128461 Staphylococcus aureus subsp. aureus COL 3236836 YP_185018.1 CDS SACOL0114 NC_002951.2 128424 129116 D identified by match to protein family HMM PF02397; capsular polysaccharide biosynthesis glycosyltransferase 128424..129116 Staphylococcus aureus subsp. aureus COL 3236837 YP_185019.1 CDS SACOL0115 NC_002951.2 129326 130492 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 129326..130492 Staphylococcus aureus subsp. aureus COL 3236838 YP_185020.1 CDS SACOL0116 NC_002951.2 130473 131711 D hypothetical protein 130473..131711 Staphylococcus aureus subsp. aureus COL 3236824 YP_185021.1 CDS SACOL0117 NC_002951.2 131701 133131 D identified by match to protein family HMM PF01943; polysaccharide extrusion protein 131701..133131 Staphylococcus aureus subsp. aureus COL 3236825 YP_185022.1 CDS sodA1 NC_002951.2 133399 133998 D identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 133399..133998 Staphylococcus aureus subsp. aureus COL 3236826 YP_185023.1 CDS SACOL0119 NC_002951.2 134366 135091 D identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; cell wall surface anchor family protein 134366..135091 Staphylococcus aureus subsp. aureus COL 3236827 YP_185024.1 CDS SACOL0120 NC_002951.2 135283 136038 R identified by similarity to EGAD:37606; match to protein family HMM PF00392; GntR family transcriptional regulator complement(135283..136038) Staphylococcus aureus subsp. aureus COL 3236828 YP_185025.1 CDS deoD1 NC_002951.2 136274 136981 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 136274..136981 Staphylococcus aureus subsp. aureus COL 3236829 YP_185026.1 CDS SACOL0122 NC_002951.2 136988 138340 D identified by match to protein family HMM PF07690; tetracycline resistance protein 136988..138340 Staphylococcus aureus subsp. aureus COL 3236830 YP_185027.1 CDS deoC1 NC_002951.2 138421 139083 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 138421..139083 Staphylococcus aureus subsp. aureus COL 3236767 YP_185028.1 CDS deoB NC_002951.2 139111 140289 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 139111..140289 Staphylococcus aureus subsp. aureus COL 3236235 YP_185029.1 CDS SACOL0125 NC_002951.2 140420 141235 R identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease complement(140420..141235) Staphylococcus aureus subsp. aureus COL 3236236 YP_185030.1 CDS SACOL0126 NC_002951.2 141232 142032 R identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease complement(141232..142032) Staphylococcus aureus subsp. aureus COL 3236237 YP_185031.1 CDS SACOL0127 NC_002951.2 142034 142807 R identified by similarity to EGAD:19702; match to protein family HMM PF00005; match to protein family HMM TIGR02315; phosphonate ABC transporter ATP-binding protein complement(142034..142807) Staphylococcus aureus subsp. aureus COL 3236238 YP_185032.1 CDS SACOL0128 NC_002951.2 143021 143977 R identified by similarity to EGAD:8376; match to protein family HMM TIGR01098; phosphonate ABC transporter phosphonate-binding protein complement(143021..143977) Staphylococcus aureus subsp. aureus COL 3236239 YP_185033.1 CDS SACOL0129 NC_002951.2 144206 145750 D identified by similarity to GB:AAO05899.1; hypothetical protein 144206..145750 Staphylococcus aureus subsp. aureus COL 3236069 YP_185034.1 CDS SACOL0130 NC_002951.2 145801 147336 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5' nucleotidase 145801..147336 Staphylococcus aureus subsp. aureus COL 3236070 YP_185035.1 CDS SACOL0135 NC_002951.2 150451 153060 D identified by similarity to SP:P17547; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 150451..153060 Staphylococcus aureus subsp. aureus COL 3236368 YP_185036.1 CDS cap5A NC_002951.2 153405 154073 D identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006; capsular polysaccharide biosynthesis protein Cap5A 153405..154073 Staphylococcus aureus subsp. aureus COL 3236369 YP_185037.1 CDS cap5B NC_002951.2 154089 154775 D identified by match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap5B 154089..154775 Staphylococcus aureus subsp. aureus COL 3236370 YP_185038.1 CDS cap5C NC_002951.2 154778 155542 D identified by match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein Cap5C 154778..155542 Staphylococcus aureus subsp. aureus COL 3236020 YP_185039.1 CDS cap5D NC_002951.2 155562 157385 D identified by match to protein family HMM PF02719; capsular polysaccharide biosynthesis protein Cap5D 155562..157385 Staphylococcus aureus subsp. aureus COL 3236021 YP_185040.1 CDS cap5E NC_002951.2 157375 158403 D identified by match to protein family HMM PF02719; capsular polysaccharide biosynthesis protein Cap5E 157375..158403 Staphylococcus aureus subsp. aureus COL 3236022 YP_185041.1 CDS cap5F NC_002951.2 158416 159525 D capsular polysaccharide biosynthesis protein Cap5F 158416..159525 Staphylococcus aureus subsp. aureus COL 3236023 YP_185042.1 CDS cap5G NC_002951.2 159529 160653 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase Cap5G 159529..160653 Staphylococcus aureus subsp. aureus COL 3236620 YP_185043.1 CDS cap5H NC_002951.2 160656 161282 D identified by match to protein family HMM PF00132; capsular polysaccharide biosynthesis protein Cap5H 160656..161282 Staphylococcus aureus subsp. aureus COL 3236621 YP_185044.1 CDS cap5I NC_002951.2 161287 162396 D capsular polysaccharide biosynthesis protein Cap5I 161287..162396 Staphylococcus aureus subsp. aureus COL 3236622 YP_185045.1 CDS cap5J NC_002951.2 162410 163576 D identified by match to protein family HMM PF04932; capsular polysaccharide biosynthesis protein Cap5J 162410..163576 Staphylococcus aureus subsp. aureus COL 3236731 YP_185046.1 CDS cap5K NC_002951.2 163569 164774 D capsular polysaccharide biosynthesis protein Cap5K 163569..164774 Staphylococcus aureus subsp. aureus COL 3236732 YP_185047.1 CDS cap5L NC_002951.2 164775 165980 D identified by match to protein family HMM PF00534; capsular polysaccharide biosynthesis protein Cap5L 164775..165980 Staphylococcus aureus subsp. aureus COL 3236733 YP_185048.1 CDS cap5M NC_002951.2 165991 166548 D identified by match to protein family HMM PF02397; capsular polysaccharide biosynthesis galactosyltransferase Cap5M 165991..166548 Staphylococcus aureus subsp. aureus COL 3236734 YP_185049.1 CDS cap5N NC_002951.2 166548 167435 D capsular polysaccharide biosynthesis protein Cap5N 166548..167435 Staphylococcus aureus subsp. aureus COL 3237869 YP_185050.1 CDS cap5O NC_002951.2 167489 168751 D identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; capsular polysaccharide biosynthesis protein Cap5O 167489..168751 Staphylococcus aureus subsp. aureus COL 3237870 YP_185051.1 CDS cap5P NC_002951.2 168798 169973 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase Cap5P 168798..169973 Staphylococcus aureus subsp. aureus COL 3237871 YP_185052.1 CDS SACOL0152 NC_002951.2 170038 170364 R iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdI complement(170038..170364) Staphylococcus aureus subsp. aureus COL 3237872 YP_185053.1 CDS SACOL0153 NC_002951.2 170371 170754 R identified by match to protein family HMM PF04304; hypothetical protein complement(170371..170754) Staphylococcus aureus subsp. aureus COL 3237873 YP_185054.1 CDS aldA1 NC_002951.2 171181 172668 D identified by similarity to EGAD:15875; match to protein family HMM PF00171; aldehyde dehydrogenase 171181..172668 Staphylococcus aureus subsp. aureus COL 3238707 YP_185055.1 CDS SACOL0155 NC_002951.2 173314 174273 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 173314..174273 Staphylococcus aureus subsp. aureus COL 3238708 YP_185056.1 CDS SACOL0156 NC_002951.2 174335 174538 R hypothetical protein complement(174335..174538) Staphylococcus aureus subsp. aureus COL 3238709 YP_185057.1 CDS SACOL0157 NC_002951.2 174717 175229 D hypothetical protein 174717..175229 Staphylococcus aureus subsp. aureus COL 3238710 YP_185058.1 CDS SACOL0159 NC_002951.2 177296 178057 D identified by match to protein family HMM PF00528; ABC transporter permease 177296..178057 Staphylococcus aureus subsp. aureus COL 3237543 YP_185059.1 CDS SACOL0160 NC_002951.2 178070 179101 D identified by similarity to EGAD:175821; hypothetical protein 178070..179101 Staphylococcus aureus subsp. aureus COL 3237544 YP_185060.1 CDS SACOL0161 NC_002951.2 179318 179677 D hypothetical protein 179318..179677 Staphylococcus aureus subsp. aureus COL 3237545 YP_185061.1 CDS SACOL0162 NC_002951.2 179850 180875 D Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase 179850..180875 Staphylococcus aureus subsp. aureus COL 3237546 YP_185062.1 CDS SACOL0163 NC_002951.2 181261 182511 D identified by similarity to EGAD:9179; match to protein family HMM PF07690; drug transporter 181261..182511 Staphylococcus aureus subsp. aureus COL 3236418 YP_185063.1 CDS SACOL0164 NC_002951.2 182958 190133 D identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746; gramicidin S synthetase 2 related protein 182958..190133 Staphylococcus aureus subsp. aureus COL 3236419 YP_185064.1 CDS SACOL0165 NC_002951.2 190146 190790 D identified by match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase 190146..190790 Staphylococcus aureus subsp. aureus COL 3236420 YP_185065.1 CDS SACOL0166 NC_002951.2 191118 191612 R identified by match to protein family HMM PF07274; hypothetical protein complement(191118..191612) Staphylococcus aureus subsp. aureus COL 3236421 YP_185066.1 CDS argB NC_002951.2 191867 192631 R identified by similarity to EGAD:15079; match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase complement(191867..192631) Staphylococcus aureus subsp. aureus COL 3236422 YP_185067.1 CDS argJ NC_002951.2 192647 193888 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(192647..193888) Staphylococcus aureus subsp. aureus COL 3236042 YP_185068.1 CDS argC NC_002951.2 193900 194931 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(193900..194931) Staphylococcus aureus subsp. aureus COL 3236043 YP_185069.1 CDS rocD1 NC_002951.2 194970 196154 R identified by similarity to SP:P38021; match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine aminotransferase complement(194970..196154) Staphylococcus aureus subsp. aureus COL 3236044 YP_185070.1 CDS brnQ1 NC_002951.2 196407 197762 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(196407..197762) Staphylococcus aureus subsp. aureus COL 3236045 YP_185071.1 CDS entB NC_002951.2 198038 198535 R identified by similarity to GP:1736514; match to protein family HMM PF00857; isochorismatase complement(198038..198535) Staphylococcus aureus subsp. aureus COL 3236174 YP_185072.1 CDS ipdC NC_002951.2 198662 200302 R identified by similarity to EGAD:20234; match to protein family HMM PF00205; match to protein family HMM PF02776; indole-3-pyruvate decarboxylase complement(198662..200302) Staphylococcus aureus subsp. aureus COL 3236175 YP_185073.1 CDS SACOL0174 NC_002951.2 200496 200597 D hypothetical protein 200496..200597 Staphylococcus aureus subsp. aureus COL 3236176 YP_185074.1 CDS SACOL0175 NC_002951.2 200576 202621 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; PTS system, IIABC components complement(200576..202621) Staphylococcus aureus subsp. aureus COL 3236177 YP_185075.1 CDS SACOL0176 NC_002951.2 203207 204262 D identified by match to protein family HMM PF05913; hypothetical protein 203207..204262 Staphylococcus aureus subsp. aureus COL 3236178 YP_185076.1 CDS murQ NC_002951.2 204259 205158 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 204259..205158 Staphylococcus aureus subsp. aureus COL 3236402 YP_185077.1 CDS SACOL0178 NC_002951.2 205170 206624 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system, IIBC components 205170..206624 Staphylococcus aureus subsp. aureus COL 3236403 YP_185078.1 CDS SACOL0179 NC_002951.2 206627 207502 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family phosphosugar-binding transcriptional regulator 206627..207502 Staphylococcus aureus subsp. aureus COL 3236404 YP_185079.1 CDS SACOL0180 NC_002951.2 208190 210979 D identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification enzyme, R subunit 208190..210979 Staphylococcus aureus subsp. aureus COL 3236405 YP_185080.1 CDS SACOL0181 NC_002951.2 211184 212026 D hypothetical protein 211184..212026 Staphylococcus aureus subsp. aureus COL 3236406 YP_185081.1 CDS SACOL0182 NC_002951.2 212028 212951 D hypothetical protein 212028..212951 Staphylococcus aureus subsp. aureus COL 3236714 YP_185082.1 CDS SACOL0183 NC_002951.2 212938 214050 D hypothetical protein 212938..214050 Staphylococcus aureus subsp. aureus COL 3236715 YP_185083.1 CDS SACOL0184 NC_002951.2 214315 215907 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(214315..215907) Staphylococcus aureus subsp. aureus COL 3236716 YP_185084.1 CDS SACOL0185 NC_002951.2 216035 217342 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 216035..217342 Staphylococcus aureus subsp. aureus COL 3236717 YP_185085.1 CDS SACOL0186 NC_002951.2 217348 218511 D identified by match to protein family HMM PF00528; peptide ABC transporter permease 217348..218511 Staphylococcus aureus subsp. aureus COL 3236718 YP_185086.1 CDS SACOL0187 NC_002951.2 218528 220303 D RGD-containing lipoprotein 218528..220303 Staphylococcus aureus subsp. aureus COL 3236719 YP_185087.1 CDS ggt NC_002951.2 220341 222347 D identified by similarity to EGAD:45768; match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltranspeptidase 220341..222347 Staphylococcus aureus subsp. aureus COL 3236413 YP_185088.1 CDS SACOL0189 NC_002951.2 222645 223418 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein complement(222645..223418) Staphylococcus aureus subsp. aureus COL 3236414 YP_185089.1 CDS acpD NC_002951.2 223608 224234 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(223608..224234) Staphylococcus aureus subsp. aureus COL 3236415 YP_185090.1 CDS SACOL0191 NC_002951.2 224443 225021 D identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein 224443..225021 Staphylococcus aureus subsp. aureus COL 3236416 YP_185091.1 CDS SACOL0192 NC_002951.2 225404 226501 D identified by similarity to EGAD:108619; match to protein family HMM PF00005; match to protein family HMM PF03459; maltose ABC transporter ATP-binding protein 225404..226501 Staphylococcus aureus subsp. aureus COL 3236417 YP_185092.1 CDS SACOL0193 NC_002951.2 226514 227785 D identified by similarity to EGAD:7280; match to protein family HMM PF01547; maltose ABC transporter maltose-binding protein 226514..227785 Staphylococcus aureus subsp. aureus COL 3236253 YP_185093.1 CDS SACOL0194 NC_002951.2 227788 229056 D identified by similarity to EGAD:6251; match to protein family HMM PF00528; match to protein family HMM PF05154; maltose ABC transporter permease 227788..229056 Staphylococcus aureus subsp. aureus COL 3236254 YP_185094.1 CDS SACOL0195 NC_002951.2 229058 229897 D identified by match to protein family HMM PF00528; maltose ABC transporter permease 229058..229897 Staphylococcus aureus subsp. aureus COL 3236255 YP_185095.1 CDS SACOL0196 NC_002951.2 229971 231047 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 229971..231047 Staphylococcus aureus subsp. aureus COL 3236256 YP_185096.1 CDS SACOL0197 NC_002951.2 231072 232112 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 231072..232112 Staphylococcus aureus subsp. aureus COL 3236257 YP_185097.1 CDS SACOL0198 NC_002951.2 232167 233135 D identified by similarity to GP:10173865; match to protein family HMM PF07582; hypothetical protein 232167..233135 Staphylococcus aureus subsp. aureus COL 3236768 YP_185098.1 CDS SACOL0199 NC_002951.2 233496 234068 R identified by similarity to EGAD:28959; match to protein family HMM PF04140; hypothetical protein complement(233496..234068) Staphylococcus aureus subsp. aureus COL 3236769 YP_185099.1 CDS uhpT NC_002951.2 234223 235602 D cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 234223..235602 Staphylococcus aureus subsp. aureus COL 3236770 YP_185100.1 CDS SACOL0201 NC_002951.2 235961 236719 R identified by match to protein family HMM PF00072; match to protein family HMM PF00165; AraC family DNA-binding response regulator complement(235961..236719) Staphylococcus aureus subsp. aureus COL 3236771 YP_185101.1 CDS SACOL0202 NC_002951.2 236712 238268 R identified by match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase complement(236712..238268) Staphylococcus aureus subsp. aureus COL 3236772 YP_185102.1 CDS SACOL0203 NC_002951.2 238265 239233 R iron compound ABC transporter iron compound-binding protein complement(238265..239233) Staphylococcus aureus subsp. aureus COL 3236773 YP_185103.1 CDS pflB NC_002951.2 239821 242070 D identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 239821..242070 Staphylococcus aureus subsp. aureus COL 3236774 YP_185104.1 CDS pflA NC_002951.2 242093 242848 D identified by similarity to SP:O68575; match to protein family HMM PF04055; pyruvate formate-lyase-activating enzyme 242093..242848 Staphylococcus aureus subsp. aureus COL 3236775 YP_185105.1 CDS SACOL0206 NC_002951.2 242952 243146 D hypothetical protein 242952..243146 Staphylococcus aureus subsp. aureus COL 3236776 YP_185106.1 CDS SACOL0207 NC_002951.2 243184 244947 D identified by match to protein family HMM PF03009; hypothetical protein 243184..244947 Staphylococcus aureus subsp. aureus COL 3236777 YP_185107.1 CDS SACOL0208 NC_002951.2 245111 245455 R hypothetical protein complement(245111..245455) Staphylococcus aureus subsp. aureus COL 3236831 YP_185108.1 CDS SACOL0209 NC_002951.2 245645 247555 D identified by similarity to EGAD:7465; match to protein family HMM PF04022; staphylocoagulase precursor 245645..247555 Staphylococcus aureus subsp. aureus COL 3236816 YP_185109.1 CDS SACOL0210 NC_002951.2 248021 248161 D hypothetical protein 248021..248161 Staphylococcus aureus subsp. aureus COL 3236817 YP_185110.1 CDS SACOL0211 NC_002951.2 248158 249342 R identified by similarity to EGAD:174567; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase complement(248158..249342) Staphylococcus aureus subsp. aureus COL 3236818 YP_185111.1 CDS SACOL0212 NC_002951.2 249372 251633 R identified by similarity to OMNI:NTL01BH3492; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase complement(249372..251633) Staphylococcus aureus subsp. aureus COL 3236819 YP_185112.1 CDS SACOL0213 NC_002951.2 251819 253030 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase complement(251819..253030) Staphylococcus aureus subsp. aureus COL 3236820 YP_185113.1 CDS SACOL0214 NC_002951.2 253142 254647 R identified by similarity to EGAD:7530; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase complement(253142..254647) Staphylococcus aureus subsp. aureus COL 3236821 YP_185114.1 CDS SACOL0215 NC_002951.2 254673 256244 R identified by match to protein family HMM PF01144; propionate CoA-transferase complement(254673..256244) Staphylococcus aureus subsp. aureus COL 3236822 YP_185115.1 CDS SACOL0216 NC_002951.2 256691 257833 D hypothetical protein 256691..257833 Staphylococcus aureus subsp. aureus COL 3236823 YP_185116.1 CDS SACOL0217 NC_002951.2 258147 259622 R identified by match to protein family HMM PF00496; ABC transporter substrate-binding protein complement(258147..259622) Staphylococcus aureus subsp. aureus COL 3236809 YP_185117.1 CDS SACOL0218 NC_002951.2 259820 260176 R identified by similarity to SP:P76243; match to protein family HMM PF04343; hypothetical protein complement(259820..260176) Staphylococcus aureus subsp. aureus COL 3236810 YP_185118.1 CDS SACOL0219 NC_002951.2 260333 260506 R hypothetical protein complement(260333..260506) Staphylococcus aureus subsp. aureus COL 3236811 YP_185119.1 CDS SACOL0220 NC_002951.2 260532 261677 R identified by match to protein family HMM PF00042; match to protein family HMM PF00970; flavohemoprotein complement(260532..261677) Staphylococcus aureus subsp. aureus COL 3236812 YP_185120.1 CDS ldh1 NC_002951.2 262250 263203 D identified by similarity to EGAD:7030; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 262250..263203 Staphylococcus aureus subsp. aureus COL 3236813 YP_185121.1 CDS SACOL0223 NC_002951.2 263371 263496 R hypothetical protein complement(263371..263496) Staphylococcus aureus subsp. aureus COL 3236814 YP_185122.1 CDS SACOL0224 NC_002951.2 263523 265052 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system, IIBC components complement(263523..265052) Staphylococcus aureus subsp. aureus COL 3236815 YP_185123.1 CDS SACOL0225 NC_002951.2 265414 266349 D identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase 265414..266349 Staphylococcus aureus subsp. aureus COL 3236710 YP_185124.1 CDS SACOL0228 NC_002951.2 266688 268784 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator 266688..268784 Staphylococcus aureus subsp. aureus COL 3236711 YP_185125.1 CDS SACOL0229 NC_002951.2 268769 269236 D identified by match to protein family HMM PF00359; PTS system, sugar-specific IIA component 268769..269236 Staphylococcus aureus subsp. aureus COL 3236712 YP_185126.1 CDS SACOL0230 NC_002951.2 269259 269537 D identified by match to protein family HMM PF02302; PTS system, sorbitol-specific IIB component 269259..269537 Staphylococcus aureus subsp. aureus COL 3236713 YP_185127.1 CDS SACOL0231 NC_002951.2 269602 269736 R hypothetical protein complement(269602..269736) Staphylococcus aureus subsp. aureus COL 3236805 YP_185128.1 CDS SACOL0232 NC_002951.2 269764 271023 D identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system, sorbitol-specific IIC component 269764..271023 Staphylococcus aureus subsp. aureus COL 3236806 YP_185129.1 CDS gutB NC_002951.2 271041 272096 D identified by similarity to SP:Q06004; similarity to OMNI:NTL01BH0190; match to protein family HMM PF00107; sorbitol dehydrogenase 271041..272096 Staphylococcus aureus subsp. aureus COL 3236807 YP_185130.1 CDS SACOL0234 NC_002951.2 272098 272244 D hypothetical protein 272098..272244 Staphylococcus aureus subsp. aureus COL 3236808 YP_185131.1 CDS SACOL0235 NC_002951.2 272268 273311 D identified by match to protein family HMM PF00107; hexitol dehydrogenase 272268..273311 Staphylococcus aureus subsp. aureus COL 3236701 YP_185132.1 CDS ispD NC_002951.2 273839 274555 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 273839..274555 Staphylococcus aureus subsp. aureus COL 3236702 YP_185133.1 CDS SACOL0237 NC_002951.2 274548 275573 D identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 274548..275573 Staphylococcus aureus subsp. aureus COL 3236703 YP_185134.1 CDS SACOL0238 NC_002951.2 275595 277289 D identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein 275595..277289 Staphylococcus aureus subsp. aureus COL 3236704 YP_185135.1 CDS SACOL0239 NC_002951.2 277717 278886 D identified by match to protein family HMM PF04464; TagF domain-containing protein 277717..278886 Staphylococcus aureus subsp. aureus COL 3236705 YP_185136.1 CDS ispD NC_002951.2 279162 279878 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 279162..279878 Staphylococcus aureus subsp. aureus COL 3236706 YP_185137.1 CDS SACOL0241 NC_002951.2 279871 280896 D identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 279871..280896 Staphylococcus aureus subsp. aureus COL 3236707 YP_185138.1 CDS SACOL0242 NC_002951.2 280918 282606 D identified by match to protein family HMM PF04464; teichoic acid biosynthesis protein 280918..282606 Staphylococcus aureus subsp. aureus COL 3236708 YP_185139.1 CDS SACOL0243 NC_002951.2 282642 284363 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 282642..284363 Staphylococcus aureus subsp. aureus COL 3236695 YP_185140.1 CDS scdA NC_002951.2 284503 285177 D involved in peptidoglycan cross-linking; cell wall biosynthesis protein ScdA 284503..285177 Staphylococcus aureus subsp. aureus COL 3236696 YP_185141.1 CDS lytS NC_002951.2 285424 287178 D identified by similarity to EGAD:42940; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase LytS 285424..287178 Staphylococcus aureus subsp. aureus COL 3236697 YP_185142.1 CDS lytR NC_002951.2 287181 287921 D identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397; two-component response regulator 287181..287921 Staphylococcus aureus subsp. aureus COL 3236698 YP_185143.1 CDS lrgA NC_002951.2 288034 288477 D negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA 288034..288477 Staphylococcus aureus subsp. aureus COL 3236699 YP_185144.1 CDS lrgB NC_002951.2 288470 289171 D in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 288470..289171 Staphylococcus aureus subsp. aureus COL 3236700 YP_185145.1 CDS SACOL0249 NC_002951.2 289279 289983 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(289279..289983) Staphylococcus aureus subsp. aureus COL 3236684 YP_185146.1 CDS SACOL0250 NC_002951.2 290132 290923 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, IIA component 290132..290923 Staphylococcus aureus subsp. aureus COL 3236685 YP_185147.1 CDS bglA NC_002951.2 290939 292375 D identified by similarity to EGAD:36677; match to protein family HMM PF00232; 6-phospho-beta-glucosidase 290939..292375 Staphylococcus aureus subsp. aureus COL 3236686 YP_185148.1 CDS SACOL0252 NC_002951.2 292809 293570 R hypothetical protein complement(292809..293570) Staphylococcus aureus subsp. aureus COL 3236687 YP_185149.1 CDS rbsK NC_002951.2 293821 294735 R identified by similarity to EGAD:29131; match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(293821..294735) Staphylococcus aureus subsp. aureus COL 3236688 YP_185150.1 CDS SACOL0254 NC_002951.2 294763 295167 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(294763..295167) Staphylococcus aureus subsp. aureus COL 3236689 YP_185151.1 CDS SACOL0255 NC_002951.2 295182 296063 R identified by match to protein family HMM PF06800; hypothetical protein complement(295182..296063) Staphylococcus aureus subsp. aureus COL 3236690 YP_185152.1 CDS SACOL0257 NC_002951.2 296295 297293 R identified by similarity to SP:P25551; match to protein family HMM PF00356; match to protein family HMM PF00532; ribose operon repressor complement(296295..297293) Staphylococcus aureus subsp. aureus COL 3236691 YP_185153.1 CDS SACOL0258 NC_002951.2 297444 297623 D hypothetical protein 297444..297623 Staphylococcus aureus subsp. aureus COL 3236677 YP_185154.1 CDS SACOL0259 NC_002951.2 297673 298065 D hypothetical protein 297673..298065 Staphylococcus aureus subsp. aureus COL 3236678 YP_185156.1 CDS SACOL0261 NC_002951.2 298738 300114 R identified by match to protein family HMM PF07690; drug transporter complement(298738..300114) Staphylococcus aureus subsp. aureus COL 3236680 YP_185157.1 CDS SACOL0262 NC_002951.2 300348 301340 D identified by similarity to EGAD:17563; match to protein family HMM PF02275; choloylglycine hydrolase 300348..301340 Staphylococcus aureus subsp. aureus COL 3236681 YP_185158.1 CDS lytM NC_002951.2 301648 302616 D identified by similarity to GP:2239274; match to protein family HMM PF01551; peptidoglycan hydrolase 301648..302616 Staphylococcus aureus subsp. aureus COL 3236682 YP_185159.1 CDS SACOL0264 NC_002951.2 302668 303327 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(302668..303327) Staphylococcus aureus subsp. aureus COL 3236683 YP_185160.1 CDS SACOL0265 NC_002951.2 303341 304261 R hypothetical protein complement(303341..304261) Staphylococcus aureus subsp. aureus COL 3236669 YP_185161.1 CDS SACOL0266 NC_002951.2 304258 305424 R hypothetical protein complement(304258..305424) Staphylococcus aureus subsp. aureus COL 3236670 YP_185162.1 CDS SACOL0267 NC_002951.2 305492 307015 R hypothetical protein complement(305492..307015) Staphylococcus aureus subsp. aureus COL 3236671 YP_185163.1 CDS SACOL0268 NC_002951.2 307286 307939 D hypothetical protein 307286..307939 Staphylococcus aureus subsp. aureus COL 3236672 YP_185164.1 CDS SACOL0269 NC_002951.2 307973 308560 D hypothetical protein 307973..308560 Staphylococcus aureus subsp. aureus COL 3236673 YP_185165.1 CDS SACOL0270 NC_002951.2 308703 309596 R identified by match to protein family HMM PF05257; staphyloxanthin biosynthesis protein complement(308703..309596) Staphylococcus aureus subsp. aureus COL 3236674 YP_185166.1 CDS SACOL0271 NC_002951.2 309844 310137 D identified by match to protein family HMM PF06013; hypothetical protein 309844..310137 Staphylococcus aureus subsp. aureus COL 3236675 YP_185167.1 CDS SACOL0272 NC_002951.2 310221 313250 D hypothetical protein 310221..313250 Staphylococcus aureus subsp. aureus COL 3236676 YP_185168.1 CDS SACOL0273 NC_002951.2 313250 313708 D hypothetical protein 313250..313708 Staphylococcus aureus subsp. aureus COL 3236661 YP_185169.1 CDS SACOL0274 NC_002951.2 313680 313922 D hypothetical protein 313680..313922 Staphylococcus aureus subsp. aureus COL 3236662 YP_185170.1 CDS SACOL0275 NC_002951.2 313935 315269 D hypothetical protein 313935..315269 Staphylococcus aureus subsp. aureus COL 3236663 YP_185171.1 CDS yukA NC_002951.2 315291 319730 D identified by similarity to EGAD:128572; match to protein family HMM PF01580; diarrheal toxin 315291..319730 Staphylococcus aureus subsp. aureus COL 3236664 YP_185172.1 CDS SACOL0277 NC_002951.2 319760 320152 D hypothetical protein 319760..320152 Staphylococcus aureus subsp. aureus COL 3236665 YP_185173.1 CDS SACOL0278 NC_002951.2 320168 320482 D hypothetical protein 320168..320482 Staphylococcus aureus subsp. aureus COL 3236666 YP_185174.1 CDS SACOL0279 NC_002951.2 320482 321156 D hypothetical protein 320482..321156 Staphylococcus aureus subsp. aureus COL 3236667 YP_185175.1 CDS SACOL0280 NC_002951.2 321156 321473 D hypothetical protein 321156..321473 Staphylococcus aureus subsp. aureus COL 3236668 YP_185176.1 CDS SACOL0281 NC_002951.2 321483 323327 D hypothetical protein 321483..323327 Staphylococcus aureus subsp. aureus COL 3236653 YP_185177.1 CDS SACOL0282 NC_002951.2 323338 323829 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 323338..323829 Staphylococcus aureus subsp. aureus COL 3236654 YP_185178.1 CDS SACOL0283 NC_002951.2 324037 324720 D hypothetical protein 324037..324720 Staphylococcus aureus subsp. aureus COL 3236655 YP_185179.1 CDS SACOL0284 NC_002951.2 324867 325478 D hypothetical protein 324867..325478 Staphylococcus aureus subsp. aureus COL 3236656 YP_185180.1 CDS SACOL0285 NC_002951.2 325614 325832 D hypothetical protein 325614..325832 Staphylococcus aureus subsp. aureus COL 3236657 YP_185181.1 CDS SACOL0286 NC_002951.2 325964 326464 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 325964..326464 Staphylococcus aureus subsp. aureus COL 3236658 YP_185182.2 CDS SACOL0287 NC_002951.2 326475 326975 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 326475..326975 Staphylococcus aureus subsp. aureus COL 3236659 YP_185183.1 CDS SACOL0289 NC_002951.2 327492 327983 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 327492..327983 Staphylococcus aureus subsp. aureus COL 3236646 YP_185184.1 CDS SACOL0290 NC_002951.2 328193 328876 D hypothetical protein 328193..328876 Staphylococcus aureus subsp. aureus COL 3236647 YP_185185.1 CDS SACOL0291 NC_002951.2 329462 329962 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 329462..329962 Staphylococcus aureus subsp. aureus COL 3236648 YP_185186.1 CDS SACOL0292 NC_002951.2 329974 330474 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 329974..330474 Staphylococcus aureus subsp. aureus COL 3236649 YP_185187.1 CDS SACOL0293 NC_002951.2 330485 330985 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 330485..330985 Staphylococcus aureus subsp. aureus COL 3236650 YP_185188.2 CDS SACOL0294 NC_002951.2 330996 331496 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 330996..331496 Staphylococcus aureus subsp. aureus COL 3236651 YP_185189.1 CDS SACOL0295 NC_002951.2 331507 332007 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 331507..332007 Staphylococcus aureus subsp. aureus COL 3236783 YP_185190.1 CDS SACOL0296 NC_002951.2 332018 332518 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 332018..332518 Staphylococcus aureus subsp. aureus COL 3236784 YP_185191.1 CDS SACOL0297 NC_002951.2 332529 333017 D identified by match to protein family HMM PF04634; match to protein family HMM TIGR01741; hypothetical protein 332529..333017 Staphylococcus aureus subsp. aureus COL 3236785 YP_185192.1 CDS SACOL0299 NC_002951.2 333640 334014 D hypothetical protein 333640..334014 Staphylococcus aureus subsp. aureus COL 3236786 YP_185193.1 CDS SACOL0300 NC_002951.2 334167 334565 D hypothetical protein 334167..334565 Staphylococcus aureus subsp. aureus COL 3236787 YP_185194.1 CDS SACOL0301 NC_002951.2 334781 335626 R identified by match to protein family HMM PF01226; formate/nitrite transporter family protein complement(334781..335626) Staphylococcus aureus subsp. aureus COL 3236788 YP_185195.1 CDS brnQ2 NC_002951.2 335842 337149 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(335842..337149) Staphylococcus aureus subsp. aureus COL 3236948 YP_185196.1 CDS SACOL0303 NC_002951.2 337733 338623 D identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533; 5'-nucleotidase 337733..338623 Staphylococcus aureus subsp. aureus COL 3236949 YP_185197.1 CDS SACOL0305 NC_002951.2 338872 339921 D identified by match to protein family HMM PF02687; ABC transporter permease 338872..339921 Staphylococcus aureus subsp. aureus COL 3236950 YP_185198.1 CDS SACOL0306 NC_002951.2 339934 340611 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 339934..340611 Staphylococcus aureus subsp. aureus COL 3236951 YP_185199.1 CDS pfoR NC_002951.2 340819 341850 D identified by similarity to EGAD:33437; perfringolysin O regulator protein 340819..341850 Staphylococcus aureus subsp. aureus COL 3236952 YP_185200.1 CDS SACOL0308 NC_002951.2 342193 343311 D identified by match to protein family HMM PF00294; carbohydrate kinase 342193..343311 Staphylococcus aureus subsp. aureus COL 3236778 YP_185201.1 CDS SACOL0309 NC_002951.2 343286 344209 D identified by match to protein family HMM PF04227; hypothetical protein 343286..344209 Staphylococcus aureus subsp. aureus COL 3236779 YP_185202.1 CDS SACOL0310 NC_002951.2 344220 345440 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; nucleoside permease NupC 344220..345440 Staphylococcus aureus subsp. aureus COL 3236780 YP_185203.1 CDS SACOL0311 NC_002951.2 345545 347077 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium:solute symporter family protein complement(345545..347077) Staphylococcus aureus subsp. aureus COL 3236781 YP_185204.1 CDS nanA NC_002951.2 347117 347998 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(347117..347998) Staphylococcus aureus subsp. aureus COL 3236782 YP_185205.1 CDS SACOL0313 NC_002951.2 348156 349016 D identified by match to protein family HMM PF00480; ROK family protein 348156..349016 Staphylococcus aureus subsp. aureus COL 3236927 YP_185206.1 CDS SACOL0314 NC_002951.2 349294 350094 R identified by similarity to EGAD:15022; match to protein family HMM PF01380; hypothetical protein complement(349294..350094) Staphylococcus aureus subsp. aureus COL 3236928 YP_185207.1 CDS SACOL0315 NC_002951.2 350234 350902 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 350234..350902 Staphylococcus aureus subsp. aureus COL 3236929 YP_185208.1 CDS SACOL0316 NC_002951.2 351029 352342 R identified by match to protein family HMM PF07670; hypothetical protein complement(351029..352342) Staphylococcus aureus subsp. aureus COL 3236930 YP_185209.1 CDS SACOL0317 NC_002951.2 352760 354694 D identified by similarity to EGAD:17843; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase precursor, interruption-N 352760..354694 Staphylococcus aureus subsp. aureus COL 3236931 YP_185210.1 CDS int NC_002951.2 354785 355990 R identified by similarity to EGAD:72831; match to protein family HMM PF00589; prophage L54a, integrase complement(354785..355990) Staphylococcus aureus subsp. aureus COL 3236912 YP_185211.1 CDS SACOL0319 NC_002951.2 356184 356897 R hypothetical protein complement(356184..356897) Staphylococcus aureus subsp. aureus COL 3236913 YP_185212.1 CDS SACOL0320 NC_002951.2 356975 357202 R hypothetical protein complement(356975..357202) Staphylococcus aureus subsp. aureus COL 3236914 YP_185213.1 CDS SACOL0321 NC_002951.2 357357 358076 R identified by similarity to GP:3341939; match to protein family HMM PF00717; match to protein family HMM PF01381; prophage L54a, repressor protein complement(357357..358076) Staphylococcus aureus subsp. aureus COL 3236915 YP_185214.1 CDS SACOL0322 NC_002951.2 358218 358436 D identified by similarity to GP:11127678; prophage L54a, Cro-like protein 358218..358436 Staphylococcus aureus subsp. aureus COL 3236916 YP_185215.1 CDS SACOL0323 NC_002951.2 358451 358759 D hypothetical protein 358451..358759 Staphylococcus aureus subsp. aureus COL 3236937 YP_185216.1 CDS SACOL0324 NC_002951.2 358763 358915 R hypothetical protein complement(358763..358915) Staphylococcus aureus subsp. aureus COL 3236938 YP_185217.1 CDS SACOL0325 NC_002951.2 358916 359707 D identified by similarity to GP:8918756; match to protein family HMM PF02498; prophage L54a, antirepressor 358916..359707 Staphylococcus aureus subsp. aureus COL 3236939 YP_185218.1 CDS SACOL0326 NC_002951.2 359708 359932 D hypothetical protein 359708..359932 Staphylococcus aureus subsp. aureus COL 3236940 YP_185219.1 CDS SACOL0327 NC_002951.2 359972 360217 D hypothetical protein 359972..360217 Staphylococcus aureus subsp. aureus COL 3236941 YP_185220.1 CDS SACOL0328 NC_002951.2 360186 360551 R hypothetical protein complement(360186..360551) Staphylococcus aureus subsp. aureus COL 3236942 YP_185221.1 CDS SACOL0329 NC_002951.2 360605 360805 D identified by similarity to OMNI:NTL01SA1873; hypothetical protein 360605..360805 Staphylococcus aureus subsp. aureus COL 3236932 YP_185222.1 CDS SACOL0330 NC_002951.2 360792 361172 R identified by similarity to OMNI:NTL01SA1872; hypothetical protein complement(360792..361172) Staphylococcus aureus subsp. aureus COL 3236933 YP_185223.1 CDS SACOL0331 NC_002951.2 361220 361411 D hypothetical protein 361220..361411 Staphylococcus aureus subsp. aureus COL 3236934 YP_185224.1 CDS SACOL0332 NC_002951.2 361389 361640 R identified by similarity to GP:5730267; hypothetical protein complement(361389..361640) Staphylococcus aureus subsp. aureus COL 3236935 YP_185225.1 CDS SACOL0333 NC_002951.2 361695 361958 D identified by similarity to GP:3341945; hypothetical protein 361695..361958 Staphylococcus aureus subsp. aureus COL 3236936 YP_185226.1 CDS SACOL0334 NC_002951.2 361971 362132 D identified by similarity to OMNI:NTL01SA1870; match to protein family HMM PF06900; hypothetical protein 361971..362132 Staphylococcus aureus subsp. aureus COL 3236896 YP_185227.1 CDS SACOL0335 NC_002951.2 362222 362539 D hypothetical protein 362222..362539 Staphylococcus aureus subsp. aureus COL 3236897 YP_185228.1 CDS SACOL0336 NC_002951.2 362544 362804 D identified by similarity to GP:3341947; match to protein family HMM PF06531; hypothetical protein 362544..362804 Staphylococcus aureus subsp. aureus COL 3236898 YP_185229.1 CDS SACOL0337 NC_002951.2 362814 363035 D hypothetical protein 362814..363035 Staphylococcus aureus subsp. aureus COL 3236899 YP_185230.1 CDS SACOL0338 NC_002951.2 363028 363651 D identified by similarity to GP:3282307; match to protein family HMM PF06378; hypothetical protein 363028..363651 Staphylococcus aureus subsp. aureus COL 3236900 YP_185231.1 CDS ssb1 NC_002951.2 363651 364070 D identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; prophage L54a, single-stranded DNA binding protein 363651..364070 Staphylococcus aureus subsp. aureus COL 3236901 YP_185232.1 CDS SACOL0340 NC_002951.2 364084 364779 D identified by similarity to GP:8918766; match to protein family HMM PF06147; hypothetical protein 364084..364779 Staphylococcus aureus subsp. aureus COL 3236902 YP_185233.1 CDS SACOL0341 NC_002951.2 364751 365551 D identified by similarity to GP:8918767; match to protein family HMM TIGR01446; match to protein family HMM TIGR01714; hypothetical protein 364751..365551 Staphylococcus aureus subsp. aureus COL 3236903 YP_185234.1 CDS SACOL0342 NC_002951.2 365551 365907 D hypothetical protein 365551..365907 Staphylococcus aureus subsp. aureus COL 3236904 YP_185235.1 CDS SACOL0343 NC_002951.2 365904 367145 D identified by similarity to EGAD:21924; match to protein family HMM PF03796; prophage L54a, replicative DNA helicase 365904..367145 Staphylococcus aureus subsp. aureus COL 3236905 YP_185236.1 CDS SACOL0344 NC_002951.2 367142 367357 D hypothetical protein 367142..367357 Staphylococcus aureus subsp. aureus COL 3236906 YP_185237.1 CDS SACOL0345 NC_002951.2 367360 367581 D hypothetical protein 367360..367581 Staphylococcus aureus subsp. aureus COL 3236907 YP_185238.1 CDS SACOL0346 NC_002951.2 367591 368016 D identified by match to protein family HMM PF05869; match to protein family HMM TIGR01712; prophage L54a, N-6-adenine-methyltransferase 367591..368016 Staphylococcus aureus subsp. aureus COL 3236908 YP_185239.1 CDS SACOL0347 NC_002951.2 368013 368417 D identified by similarity to GP:8918440; match to protein family HMM PF06356; hypothetical protein 368013..368417 Staphylococcus aureus subsp. aureus COL 3236909 YP_185240.1 CDS SACOL0348 NC_002951.2 368422 368607 D identified by similarity to GP:8918770; hypothetical protein 368422..368607 Staphylococcus aureus subsp. aureus COL 3236910 YP_185241.1 CDS SACOL0349 NC_002951.2 368608 368865 D identified by similarity to GP:8918771; match to protein family HMM PF01381; hypothetical protein 368608..368865 Staphylococcus aureus subsp. aureus COL 3236911 YP_185242.1 CDS SACOL0350 NC_002951.2 368877 369233 D identified by similarity to GP:12697847; hypothetical protein 368877..369233 Staphylococcus aureus subsp. aureus COL 3236943 YP_185243.1 CDS SACOL0351 NC_002951.2 369237 369479 D identified by similarity to GP:12697848; match to protein family HMM PF06194; hypothetical protein 369237..369479 Staphylococcus aureus subsp. aureus COL 3236944 YP_185244.1 CDS SACOL0352 NC_002951.2 369493 369699 D hypothetical protein 369493..369699 Staphylococcus aureus subsp. aureus COL 3236945 YP_185245.1 CDS SACOL0353 NC_002951.2 369702 370103 D hypothetical protein 369702..370103 Staphylococcus aureus subsp. aureus COL 3236946 YP_185246.1 CDS SACOL0354 NC_002951.2 370100 370447 D identified by similarity to GP:5001708; match to protein family HMM TIGR01671; hypothetical protein 370100..370447 Staphylococcus aureus subsp. aureus COL 3236947 YP_185247.1 CDS SACOL0355 NC_002951.2 370444 370752 D identified by similarity to GP:8918774; hypothetical protein 370444..370752 Staphylococcus aureus subsp. aureus COL 3236922 YP_185248.1 CDS SACOL0356 NC_002951.2 370745 370981 D identified by similarity to GP:8918447; match to protein family HMM PF06260; hypothetical protein 370745..370981 Staphylococcus aureus subsp. aureus COL 3236923 YP_185249.1 CDS dut NC_002951.2 370986 371528 D identified by similarity to SP:P33316; match to protein family HMM PF00692; prophage L54a, deoxyuridine 5'-triphosphate nucleotidohydrolase 370986..371528 Staphylococcus aureus subsp. aureus COL 3236924 YP_185250.1 CDS SACOL0358 NC_002951.2 371565 371771 D identified by similarity to OMNI:NTL02SA0871; match to protein family HMM PF07129; hypothetical protein 371565..371771 Staphylococcus aureus subsp. aureus COL 3236925 YP_185251.1 CDS SACOL0359 NC_002951.2 371768 371962 D hypothetical protein 371768..371962 Staphylococcus aureus subsp. aureus COL 3236926 YP_185252.1 CDS SACOL0360 NC_002951.2 371959 372162 D hypothetical protein 371959..372162 Staphylococcus aureus subsp. aureus COL 3236917 YP_185253.1 CDS SACOL0361 NC_002951.2 372155 372307 D identified by similarity to GP:12697854; match to protein family HMM PF06116; hypothetical protein 372155..372307 Staphylococcus aureus subsp. aureus COL 3236918 YP_185254.1 CDS SACOL0362 NC_002951.2 372375 372575 D identified by similarity to GP:12697855; match to protein family HMM PF07438; hypothetical protein 372375..372575 Staphylococcus aureus subsp. aureus COL 3236919 YP_185255.1 CDS SACOL0363 NC_002951.2 372532 372882 D identified by similarity to OMNI:SA0363; hypothetical protein 372532..372882 Staphylococcus aureus subsp. aureus COL 3236920 YP_185256.1 CDS SACOL0364 NC_002951.2 372895 373332 D identified by match to protein family HMM TIGR01636; prophage L54a, RinA family transcriptional regulator 372895..373332 Staphylococcus aureus subsp. aureus COL 3236921 YP_185257.1 CDS SACOL0365 NC_002951.2 373489 373803 D identified by match to protein family HMM PF01844; prophage L54a, HNH endonuclease 373489..373803 Staphylococcus aureus subsp. aureus COL 3236794 YP_185258.1 CDS SACOL0366 NC_002951.2 373932 374237 D identified by match to protein family HMM PF05119; prophage L54a, terminase, small subunit 373932..374237 Staphylococcus aureus subsp. aureus COL 3236795 YP_185259.1 CDS SACOL0367 NC_002951.2 374227 375918 D identified by similarity to GP:12697860; match to protein family HMM PF03354; prophage L54a, terminase, large subunit 374227..375918 Staphylococcus aureus subsp. aureus COL 3236796 YP_185260.1 CDS SACOL0368 NC_002951.2 375923 377161 D identified by similarity to GP:4126611; match to protein family HMM PF04860; match to protein family HMM TIGR01537; prophage L54a, HK97 family portal protein 375923..377161 Staphylococcus aureus subsp. aureus COL 3236797 YP_185261.1 CDS SACOL0369 NC_002951.2 377145 377918 D identified by match to protein family HMM PF00574; prophage L54a, Clp protease 377145..377918 Staphylococcus aureus subsp. aureus COL 3236798 YP_185262.1 CDS SACOL0370 NC_002951.2 377930 379093 D identified by match to protein family HMM PF05065; prophage L54a, major capsid protein 377930..379093 Staphylococcus aureus subsp. aureus COL 3236799 YP_185263.1 CDS SACOL0371 NC_002951.2 379162 379440 D identified by similarity to GP:13361058; match to protein family HMM TIGR01560; prophage L54a, DNA packaging protein 379162..379440 Staphylococcus aureus subsp. aureus COL 3236800 YP_185264.1 CDS SACOL0372 NC_002951.2 379452 379784 D hypothetical protein 379452..379784 Staphylococcus aureus subsp. aureus COL 3236801 YP_185265.1 CDS SACOL0373 NC_002951.2 379781 380182 D identified by similarity to GP:12697866; hypothetical protein 379781..380182 Staphylococcus aureus subsp. aureus COL 3236802 YP_185266.1 CDS SACOL0374 NC_002951.2 380183 380578 D identified by similarity to OMNI:NTL01SA1839; hypothetical protein 380183..380578 Staphylococcus aureus subsp. aureus COL 3236803 YP_185267.1 CDS SACOL0375 NC_002951.2 380613 381254 D identified by similarity to GP:12697868; match to protein family HMM PF04630; match to protein family HMM TIGR01603; prophage L54a, major tail protein 380613..381254 Staphylococcus aureus subsp. aureus COL 3236804 YP_185268.1 CDS SACOL0376 NC_002951.2 381346 381801 D identified by match to protein family HMM PF02368; prophage L54a, major tail protein 381346..381801 Staphylococcus aureus subsp. aureus COL 3236789 YP_185269.1 CDS SACOL0377 NC_002951.2 381859 382209 D hypothetical protein 381859..382209 Staphylococcus aureus subsp. aureus COL 3236790 YP_185270.1 CDS SACOL0378 NC_002951.2 382251 382409 D hypothetical protein 382251..382409 Staphylococcus aureus subsp. aureus COL 3236791 YP_185271.1 CDS SACOL0379 NC_002951.2 382423 388623 D identified by match to protein family HMM PF01551; match to protein family HMM TIGR01760; prophage L54a, TP901 family tail tape meausure protein 382423..388623 Staphylococcus aureus subsp. aureus COL 3236652 YP_185272.1 CDS SACOL0380 NC_002951.2 388623 389447 D identified by similarity to GP:12697873; match to protein family HMM PF06997; hypothetical protein 388623..389447 Staphylococcus aureus subsp. aureus COL 3236638 YP_185273.1 CDS SACOL0381 NC_002951.2 389456 391039 D identified by similarity to GP:12697874; match to protein family HMM PF06605; hypothetical protein 389456..391039 Staphylococcus aureus subsp. aureus COL 3236639 YP_185274.1 CDS SACOL0382 NC_002951.2 391039 391329 D hypothetical protein 391039..391329 Staphylococcus aureus subsp. aureus COL 3236640 YP_185275.1 CDS SACOL0383 NC_002951.2 391345 393255 D identified by similarity to GP:8918471; hypothetical protein 391345..393255 Staphylococcus aureus subsp. aureus COL 3236641 YP_185276.1 CDS SACOL0384 NC_002951.2 393255 394721 D identified by similarity to GP:8918472; hypothetical protein 393255..394721 Staphylococcus aureus subsp. aureus COL 3236642 YP_185277.1 CDS SACOL0385 NC_002951.2 394721 395110 D identified by similarity to GP:12697878; hypothetical protein 394721..395110 Staphylococcus aureus subsp. aureus COL 3236643 YP_185278.1 CDS SACOL0386 NC_002951.2 395103 395267 D identified by match to protein family HMM TIGR01669; hypothetical protein 395103..395267 Staphylococcus aureus subsp. aureus COL 3236644 YP_185279.1 CDS SACOL0387 NC_002951.2 395313 395612 D identified by similarity to GP:8918803; hypothetical protein 395313..395612 Staphylococcus aureus subsp. aureus COL 3236645 YP_185280.1 CDS SACOL0388 NC_002951.2 395748 396050 D identified by similarity to GP:3341931; match to protein family HMM PF04688; match to protein family HMM TIGR01592; prophage L54a, holin 395748..396050 Staphylococcus aureus subsp. aureus COL 3236631 YP_185281.1 CDS SACOL0389 NC_002951.2 396062 397516 D identified by similarity to GP:12697881; match to protein family HMM PF01520; match to protein family HMM PF05257; prophage L54a, amidase 396062..397516 Staphylococcus aureus subsp. aureus COL 3236632 YP_185282.1 CDS SACOL0390 NC_002951.2 398286 398408 D identified by similarity to EGAD:17843; lipase precursor, interruption-C 398286..398408 Staphylococcus aureus subsp. aureus COL 3236633 YP_185283.1 CDS SACOL0391 NC_002951.2 398650 399477 R hypothetical protein complement(398650..399477) Staphylococcus aureus subsp. aureus COL 3236634 YP_185284.1 CDS SACOL0392 NC_002951.2 399550 400749 R identified by match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase complement(399550..400749) Staphylococcus aureus subsp. aureus COL 3236635 YP_185285.1 CDS SACOL0393 NC_002951.2 400845 400937 D hypothetical protein 400845..400937 Staphylococcus aureus subsp. aureus COL 3236636 YP_185286.1 CDS SACOL0394 NC_002951.2 401051 402052 D identified by match to protein family HMM PF00296; hypothetical protein 401051..402052 Staphylococcus aureus subsp. aureus COL 3236637 YP_185287.1 CDS SACOL0395 NC_002951.2 402086 402418 D identified by match to protein family HMM PF01597; glycine cleavage system H protein 402086..402418 Staphylococcus aureus subsp. aureus COL 3236623 YP_185288.1 CDS SACOL0396 NC_002951.2 402419 403219 D identified by match to protein family HMM PF01661; hypothetical protein 402419..403219 Staphylococcus aureus subsp. aureus COL 3236624 YP_185289.1 CDS SACOL0397 NC_002951.2 403209 404153 D hypothetical protein 403209..404153 Staphylococcus aureus subsp. aureus COL 3236625 YP_185290.1 CDS SACOL0398 NC_002951.2 404131 405153 D identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A family protein 404131..405153 Staphylococcus aureus subsp. aureus COL 3236626 YP_185291.1 CDS SACOL0399 NC_002951.2 405468 406493 D oxidoreductase 405468..406493 Staphylococcus aureus subsp. aureus COL 3236627 YP_185292.1 CDS ulaA NC_002951.2 406586 407932 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(406586..407932) Staphylococcus aureus subsp. aureus COL 3236628 YP_185293.1 CDS SACOL0401 NC_002951.2 407947 408231 R identified by match to protein family HMM PF02302; hypothetical protein complement(407947..408231) Staphylococcus aureus subsp. aureus COL 3236629 YP_185294.1 CDS SACOL0402 NC_002951.2 408233 408676 R identified by match to protein family HMM PF00359; PTS system, IIA component complement(408233..408676) Staphylococcus aureus subsp. aureus COL 3236630 YP_185295.1 CDS SACOL0403 NC_002951.2 408681 410636 R identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator complement(408681..410636) Staphylococcus aureus subsp. aureus COL 3236524 YP_185296.1 CDS SACOL0404 NC_002951.2 410848 411267 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 410848..411267 Staphylococcus aureus subsp. aureus COL 3236525 YP_185297.1 CDS SACOL0405 NC_002951.2 411374 412729 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 411374..412729 Staphylococcus aureus subsp. aureus COL 3236526 YP_185298.1 CDS SACOL0406 NC_002951.2 412833 413273 D hypothetical protein 412833..413273 Staphylococcus aureus subsp. aureus COL 3236527 YP_185299.1 CDS glpT NC_002951.2 413356 414714 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter complement(413356..414714) Staphylococcus aureus subsp. aureus COL 3236528 YP_185300.1 CDS SACOL0408 NC_002951.2 415022 415882 D identified by match to protein family HMM PF00903; glyoxalase 415022..415882 Staphylococcus aureus subsp. aureus COL 3236529 YP_185301.1 CDS SACOL0409 NC_002951.2 415962 417023 D identified by similarity to GP:9965112; match to protein family HMM PF00296; hypothetical protein 415962..417023 Staphylococcus aureus subsp. aureus COL 3236530 YP_185302.1 CDS SACOL0410 NC_002951.2 417037 417603 D identified by match to protein family HMM PF03358; FMN reductase-like protein 417037..417603 Staphylococcus aureus subsp. aureus COL 3236531 YP_185303.1 CDS SACOL0411 NC_002951.2 417663 418658 R identified by match to protein family HMM PF03601; hypothetical protein complement(417663..418658) Staphylococcus aureus subsp. aureus COL 3236516 YP_185304.1 CDS SACOL0412 NC_002951.2 418756 419052 D hypothetical protein 418756..419052 Staphylococcus aureus subsp. aureus COL 3236517 YP_185305.1 CDS SACOL0413 NC_002951.2 419132 419677 D identified by match to protein family HMM PF00583; ribosomal-protein-serine acetyltransferase 419132..419677 Staphylococcus aureus subsp. aureus COL 3236518 YP_185306.1 CDS SACOL0414 NC_002951.2 419945 420799 D identified by match to protein family HMM PF04302; lipoprotein 419945..420799 Staphylococcus aureus subsp. aureus COL 3236519 YP_185307.1 CDS SACOL0415 NC_002951.2 420796 422025 D identified by similarity to EGAD:20441; match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413; Dyp-type peroxidase 420796..422025 Staphylococcus aureus subsp. aureus COL 3236520 YP_185308.1 CDS SACOL0416 NC_002951.2 422006 423718 D hypothetical protein 422006..423718 Staphylococcus aureus subsp. aureus COL 3236521 YP_185309.1 CDS SACOL0417 NC_002951.2 423810 424466 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; MttB family protein complement(423810..424466) Staphylococcus aureus subsp. aureus COL 3236522 YP_185310.1 CDS SACOL0418 NC_002951.2 424528 424743 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; mttA/Hcf106 family protein complement(424528..424743) Staphylococcus aureus subsp. aureus COL 3236523 YP_185311.1 CDS SACOL0419 NC_002951.2 424852 425241 R hypothetical protein complement(424852..425241) Staphylococcus aureus subsp. aureus COL 3236509 YP_185312.1 CDS SACOL0420 NC_002951.2 425482 425685 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 425482..425685 Staphylococcus aureus subsp. aureus COL 3236510 YP_185313.1 CDS SACOL0421 NC_002951.2 425682 426395 D hypothetical protein 425682..426395 Staphylococcus aureus subsp. aureus COL 3236511 YP_185314.1 CDS SACOL0422 NC_002951.2 426420 427262 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 426420..427262 Staphylococcus aureus subsp. aureus COL 3236512 YP_185315.1 CDS SACOL0424 NC_002951.2 427262 427891 D hypothetical protein 427262..427891 Staphylococcus aureus subsp. aureus COL 3236513 YP_185316.1 CDS SACOL0425 NC_002951.2 428258 429391 R hypothetical protein complement(428258..429391) Staphylococcus aureus subsp. aureus COL 3236514 YP_185317.1 CDS SACOL0426 NC_002951.2 429930 431111 D identified by similarity to EGAD:16007; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 429930..431111 Staphylococcus aureus subsp. aureus COL 3236515 YP_185318.1 CDS SACOL0427 NC_002951.2 431194 431946 R identified by match to protein family HMM PF04199; hypothetical protein complement(431194..431946) Staphylococcus aureus subsp. aureus COL 3236501 YP_185319.1 CDS metE NC_002951.2 431989 434217 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(431989..434217) Staphylococcus aureus subsp. aureus COL 3236502 YP_185320.1 CDS SACOL0429 NC_002951.2 434214 436055 R catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase complement(434214..436055) Staphylococcus aureus subsp. aureus COL 3236503 YP_185321.1 CDS SACOL0430 NC_002951.2 436024 437184 R identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein complement(436024..437184) Staphylococcus aureus subsp. aureus COL 3236504 YP_185322.1 CDS SACOL0431 NC_002951.2 437181 438284 R identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein complement(437181..438284) Staphylococcus aureus subsp. aureus COL 3236505 YP_185323.1 CDS SACOL0432 NC_002951.2 438948 439793 D identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; spoOJ protein 438948..439793 Staphylococcus aureus subsp. aureus COL 3236506 YP_185324.1 CDS SACOL0433 NC_002951.2 439950 440831 D identified by similarity to SP:P75783; match to protein family HMM PF00924; hypothetical protein 439950..440831 Staphylococcus aureus subsp. aureus COL 3236507 YP_185325.1 CDS SACOL0434 NC_002951.2 440861 441064 D identified by similarity to GP:10176677; match to protein family HMM PF06107; hypothetical protein 440861..441064 Staphylococcus aureus subsp. aureus COL 3236508 YP_185326.1 CDS SACOL0435 NC_002951.2 441076 442173 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 441076..442173 Staphylococcus aureus subsp. aureus COL 3236494 YP_185327.1 CDS SACOL0436 NC_002951.2 442259 442450 R identified by similarity to GB:AAO06017.1; hypothetical protein complement(442259..442450) Staphylococcus aureus subsp. aureus COL 3236495 YP_185328.2 CDS rpsF NC_002951.2 442694 442990 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 442694..442990 Staphylococcus aureus subsp. aureus COL 3236496 YP_185329.1 CDS ssb2 NC_002951.2 443011 443514 D identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 443011..443514 Staphylococcus aureus subsp. aureus COL 3236497 YP_185330.1 CDS rpsR NC_002951.2 443566 443808 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 443566..443808 Staphylococcus aureus subsp. aureus COL 3236498 YP_185331.1 CDS SACOL0440 NC_002951.2 444074 445012 R identified by similarity to GP:4894254; hypothetical protein complement(444074..445012) Staphylococcus aureus subsp. aureus COL 3236499 YP_185332.1 CDS SACOL0442 NC_002951.2 445958 446569 D enterotoxin 445958..446569 Staphylococcus aureus subsp. aureus COL 3236485 YP_185333.1 CDS SACOL0443 NC_002951.2 446938 447306 D identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655; hypothetical protein 446938..447306 Staphylococcus aureus subsp. aureus COL 3236486 YP_185334.1 CDS SACOL0444 NC_002951.2 447487 448059 D identified by match to protein family HMM PF03413; hypothetical protein 447487..448059 Staphylococcus aureus subsp. aureus COL 3236487 YP_185335.1 CDS SACOL0445 NC_002951.2 448197 448460 R identified by similarity to GB:AAO06012.1; hypothetical protein complement(448197..448460) Staphylococcus aureus subsp. aureus COL 3236488 YP_185336.1 CDS SACOL0446 NC_002951.2 448760 449011 D identified by match to protein family HMM PF04226; hypothetical protein 448760..449011 Staphylococcus aureus subsp. aureus COL 3236489 YP_185337.1 CDS SACOL0447 NC_002951.2 449437 450018 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 449437..450018 Staphylococcus aureus subsp. aureus COL 3236490 YP_185338.1 CDS SACOL0448 NC_002951.2 450084 450467 R hypothetical protein complement(450084..450467) Staphylococcus aureus subsp. aureus COL 3236491 YP_185339.1 CDS SACOL0449 NC_002951.2 450722 451348 R hypothetical protein complement(450722..451348) Staphylococcus aureus subsp. aureus COL 3236492 YP_185340.1 CDS SACOL0450 NC_002951.2 451421 451714 R hypothetical protein complement(451421..451714) Staphylococcus aureus subsp. aureus COL 3236478 YP_185341.1 CDS ahpF NC_002951.2 451793 453316 R identified by similarity to EGAD:30995; match to protein family HMM PF00070; alkyl hydroperoxide reductase subunit F complement(451793..453316) Staphylococcus aureus subsp. aureus COL 3236479 YP_185342.1 CDS ahpC NC_002951.2 453332 453901 R identified by similarity to EGAD:37649; match to protein family HMM PF00578; alkyl hydroperoxide reductase subunit C complement(453332..453901) Staphylococcus aureus subsp. aureus COL 3236480 YP_185343.1 CDS SACOL0453 NC_002951.2 454393 455148 D identified by similarity to EGAD:18715; match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase 454393..455148 Staphylococcus aureus subsp. aureus COL 3236481 YP_185344.1 CDS SACOL0454 NC_002951.2 455229 456617 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(455229..456617) Staphylococcus aureus subsp. aureus COL 3236482 YP_185345.1 CDS SACOL0455 NC_002951.2 457594 458550 R identified by similarity to SP:Q8CQQ7; hypothetical protein complement(457594..458550) Staphylococcus aureus subsp. aureus COL 3236483 YP_185346.1 CDS SACOL0456 NC_002951.2 458668 459330 R identified by similarity to GB:AAO05995.1; hypothetical protein complement(458668..459330) Staphylococcus aureus subsp. aureus COL 3236484 YP_185347.1 CDS SACOL0457 NC_002951.2 459473 459880 R identified by similarity to GB:AAO05994.1; hypothetical protein complement(459473..459880) Staphylococcus aureus subsp. aureus COL 3236471 YP_185348.1 CDS xpt NC_002951.2 460392 460970 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 460392..460970 Staphylococcus aureus subsp. aureus COL 3236472 YP_185349.1 CDS pbuX NC_002951.2 460970 462238 D identified by similarity to EGAD:30678; match to protein family HMM PF00860; match to protein family HMM TIGR00801; xanthine permease 460970..462238 Staphylococcus aureus subsp. aureus COL 3236473 YP_185350.1 CDS guaB NC_002951.2 462276 463742 D identified by similarity to SP:P21879; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 462276..463742 Staphylococcus aureus subsp. aureus COL 3236474 YP_185351.1 CDS guaA NC_002951.2 463767 465308 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 463767..465308 Staphylococcus aureus subsp. aureus COL 3236475 YP_185352.1 CDS SACOL0462 NC_002951.2 465421 465957 R hypothetical protein complement(465421..465957) Staphylococcus aureus subsp. aureus COL 3236476 YP_185353.1 CDS SACOL0463 NC_002951.2 466350 467054 R hypothetical protein complement(466350..467054) Staphylococcus aureus subsp. aureus COL 3236477 YP_185354.1 CDS SACOL0464 NC_002951.2 467453 467725 R identified by match to protein family HMM PF01527; IS3 family transposase complement(467453..467725) Staphylococcus aureus subsp. aureus COL 3236467 YP_185355.1 CDS SACOL0465 NC_002951.2 467986 468138 R hypothetical protein complement(467986..468138) Staphylococcus aureus subsp. aureus COL 3236792 YP_185356.1 CDS SACOL0466 NC_002951.2 468662 469021 R identified by match to protein family HMM PF06993; hypothetical protein complement(468662..469021) Staphylococcus aureus subsp. aureus COL 3236793 YP_185357.1 CDS SACOL0467 NC_002951.2 469040 469885 R hypothetical protein complement(469040..469885) Staphylococcus aureus subsp. aureus COL 3236953 YP_185358.1 CDS SACOL0468 NC_002951.2 470357 471037 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 470357..471037 Staphylococcus aureus subsp. aureus COL 3236954 YP_185359.1 CDS SACOL0469 NC_002951.2 471323 472018 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 471323..472018 Staphylococcus aureus subsp. aureus COL 3236955 YP_185360.1 CDS SACOL0470 NC_002951.2 472309 473367 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 472309..473367 Staphylococcus aureus subsp. aureus COL 3236956 YP_185361.1 CDS SACOL0471 NC_002951.2 473486 473623 D hypothetical protein 473486..473623 Staphylococcus aureus subsp. aureus COL 3236957 YP_185362.1 CDS SACOL0472 NC_002951.2 473732 474658 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 473732..474658 Staphylococcus aureus subsp. aureus COL 3236958 YP_185363.1 CDS SACOL0473 NC_002951.2 475038 475736 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 475038..475736 Staphylococcus aureus subsp. aureus COL 3236959 YP_185364.1 CDS SACOL0474 NC_002951.2 476102 476785 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 476102..476785 Staphylococcus aureus subsp. aureus COL 3236960 YP_185365.1 CDS SACOL0475 NC_002951.2 476870 476971 R hypothetical protein complement(476870..476971) Staphylococcus aureus subsp. aureus COL 3236961 YP_185366.1 CDS hsdM1 NC_002951.2 477049 478605 D identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 477049..478605 Staphylococcus aureus subsp. aureus COL 3236962 YP_185367.1 CDS SACOL0477 NC_002951.2 478598 479809 D identified by match to protein family HMM PF01420; type I restriction-modification system S subunit 478598..479809 Staphylococcus aureus subsp. aureus COL 3236963 YP_185368.1 CDS SACOL0478 NC_002951.2 480192 480869 D these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein 480192..480869 Staphylococcus aureus subsp. aureus COL 3236964 YP_185369.1 CDS SACOL0479 NC_002951.2 480891 482399 D identified by match to protein family HMM TIGR01168; hypothetical protein 480891..482399 Staphylococcus aureus subsp. aureus COL 3236965 YP_185370.1 CDS SACOL0480 NC_002951.2 482503 482811 R hypothetical protein complement(482503..482811) Staphylococcus aureus subsp. aureus COL 3236966 YP_185371.1 CDS SACOL0481 NC_002951.2 483149 483949 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 483149..483949 Staphylococcus aureus subsp. aureus COL 3236967 YP_185372.1 CDS SACOL0482 NC_002951.2 483981 484772 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 483981..484772 Staphylococcus aureus subsp. aureus COL 3236968 YP_185373.1 CDS SACOL0483 NC_002951.2 484842 485618 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; staphyloccoccus tandem lipoprotein 484842..485618 Staphylococcus aureus subsp. aureus COL 3236969 YP_185374.1 CDS SACOL0484 NC_002951.2 485794 486609 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 485794..486609 Staphylococcus aureus subsp. aureus COL 3236970 YP_185375.1 CDS SACOL0485 NC_002951.2 486628 487413 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 486628..487413 Staphylococcus aureus subsp. aureus COL 3236971 YP_185376.1 CDS SACOL0486 NC_002951.2 487593 488408 D identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein 487593..488408 Staphylococcus aureus subsp. aureus COL 3236972 YP_185377.1 CDS SACOL0487 NC_002951.2 488401 489726 D hypothetical protein 488401..489726 Staphylococcus aureus subsp. aureus COL 3236973 YP_185378.1 CDS SACOL0488 NC_002951.2 489723 490046 D hypothetical protein 489723..490046 Staphylococcus aureus subsp. aureus COL 3236974 YP_185379.1 CDS SACOL0489 NC_002951.2 490065 490379 D hypothetical protein 490065..490379 Staphylococcus aureus subsp. aureus COL 3236975 YP_185380.1 CDS SACOL0490 NC_002951.2 490669 490929 R hypothetical protein complement(490669..490929) Staphylococcus aureus subsp. aureus COL 3236976 YP_185381.1 CDS SACOL0491 NC_002951.2 491048 492250 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein 491048..492250 Staphylococcus aureus subsp. aureus COL 3236977 YP_185382.1 CDS nuoF NC_002951.2 493838 495322 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit 5 493838..495322 Staphylococcus aureus subsp. aureus COL 3236978 YP_185383.1 CDS SACOL0495 NC_002951.2 495335 498040 D hypothetical protein 495335..498040 Staphylococcus aureus subsp. aureus COL 3236979 YP_185384.1 CDS SACOL0496 NC_002951.2 498202 498564 D hypothetical protein 498202..498564 Staphylococcus aureus subsp. aureus COL 3236980 YP_185385.1 CDS SACOL0497 NC_002951.2 498793 499140 R hypothetical protein complement(498793..499140) Staphylococcus aureus subsp. aureus COL 3236981 YP_185386.1 CDS SACOL0498 NC_002951.2 499247 499921 D identified by match to protein family HMM PF01569; hypothetical protein 499247..499921 Staphylococcus aureus subsp. aureus COL 3236982 YP_185387.1 CDS SACOL0499 NC_002951.2 499958 500692 D hypothetical protein 499958..500692 Staphylococcus aureus subsp. aureus COL 3236983 YP_185388.1 CDS SACOL0500 NC_002951.2 500802 500918 D hypothetical protein 500802..500918 Staphylococcus aureus subsp. aureus COL 3236984 YP_185389.1 CDS SACOL0501 NC_002951.2 501148 502485 D identified by match to protein family HMM PF00209; sodium-dependent transporter 501148..502485 Staphylococcus aureus subsp. aureus COL 3236985 YP_185390.1 CDS SACOL0502 NC_002951.2 502702 503616 D identified by similarity to EGAD:89450; match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase 502702..503616 Staphylococcus aureus subsp. aureus COL 3236986 YP_185391.1 CDS SACOL0503 NC_002951.2 503600 504742 D identified by match to protein family HMM PF01053; trans-sulfuration enzyme family protein 503600..504742 Staphylococcus aureus subsp. aureus COL 3237078 YP_185392.1 CDS SACOL0504 NC_002951.2 505036 506061 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 505036..506061 Staphylococcus aureus subsp. aureus COL 3237079 YP_185393.1 CDS SACOL0505 NC_002951.2 506065 506724 D identified by match to protein family HMM PF00528; ABC transporter permease 506065..506724 Staphylococcus aureus subsp. aureus COL 3237080 YP_185394.1 CDS SACOL0506 NC_002951.2 506761 507603 D identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 506761..507603 Staphylococcus aureus subsp. aureus COL 3237081 YP_185395.1 CDS SACOL0507 NC_002951.2 507935 508939 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 507935..508939 Staphylococcus aureus subsp. aureus COL 3237082 YP_185396.1 CDS SACOL0508 NC_002951.2 509124 509393 R identified by similarity to GB:AAO05959.1; hypothetical protein complement(509124..509393) Staphylococcus aureus subsp. aureus COL 3237083 YP_185397.1 CDS SACOL0509 NC_002951.2 509542 509937 D identified by match to protein family HMM PF00293; MutT/nudix family protein 509542..509937 Staphylococcus aureus subsp. aureus COL 3237084 YP_185398.1 CDS SACOL0510 NC_002951.2 509927 510412 D identified by match to protein family HMM PF00583; acetyltransferase 509927..510412 Staphylococcus aureus subsp. aureus COL 3237085 YP_185399.1 CDS SACOL0511 NC_002951.2 510581 511363 R hypothetical protein complement(510581..511363) Staphylococcus aureus subsp. aureus COL 3237086 YP_185400.1 CDS SACOL0512 NC_002951.2 511360 512472 R hypothetical protein complement(511360..512472) Staphylococcus aureus subsp. aureus COL 3237087 YP_185401.1 CDS gltC NC_002951.2 512593 513477 R identified by similarity to EGAD:6257; match to protein family HMM PF00126; transcriptional regulatory protein GltC complement(512593..513477) Staphylococcus aureus subsp. aureus COL 3237088 YP_185402.1 CDS gltB NC_002951.2 513658 518157 D identified by similarity to EGAD:109137; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; glutamate synthase 513658..518157 Staphylococcus aureus subsp. aureus COL 3237089 YP_185403.1 CDS gltD NC_002951.2 518175 519638 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase 518175..519638 Staphylococcus aureus subsp. aureus COL 3237090 YP_185404.1 CDS SACOL0516 NC_002951.2 520470 521897 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, IIBC components 520470..521897 Staphylococcus aureus subsp. aureus COL 3237091 YP_185405.1 CDS SACOL0517 NC_002951.2 521961 523601 D identified by match to protein family HMM PF00128; alpha-amylase 521961..523601 Staphylococcus aureus subsp. aureus COL 3237092 YP_185406.1 CDS SACOL0518 NC_002951.2 523626 524354 D identified by similarity to EGAD:37606; match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 523626..524354 Staphylococcus aureus subsp. aureus COL 3237093 YP_185407.1 CDS SACOL0519 NC_002951.2 524993 525517 D identified by match to protein family HMM PF00583; acetyltransferase 524993..525517 Staphylococcus aureus subsp. aureus COL 3237094 YP_185408.1 CDS dnaX NC_002951.2 525586 527283 D identified by similarity to SP:P09122; match to protein family HMM PF00004; DNA polymerase III subunits gamma and tau 525586..527283 Staphylococcus aureus subsp. aureus COL 3237095 YP_185409.1 CDS SACOL0521 NC_002951.2 527373 527690 D identified by similarity to EGAD:19844; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 527373..527690 Staphylococcus aureus subsp. aureus COL 3237096 YP_185410.1 CDS recR NC_002951.2 527697 528293 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 527697..528293 Staphylococcus aureus subsp. aureus COL 3237097 YP_185411.1 CDS SACOL0523 NC_002951.2 535057 536394 D identified by match to protein family HMM PF01276; Orn/Lys/Arg decarboxylase 535057..536394 Staphylococcus aureus subsp. aureus COL 3237098 YP_185412.1 CDS tmk NC_002951.2 536396 537013 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 536396..537013 Staphylococcus aureus subsp. aureus COL 3237099 YP_185413.1 CDS SACOL0525 NC_002951.2 537041 537370 D identified by similarity to GP:10172655; match to protein family HMM PF06153; hypothetical protein 537041..537370 Staphylococcus aureus subsp. aureus COL 3237100 YP_185414.1 CDS SACOL0526 NC_002951.2 537584 538510 D identified by similarity to EGAD:13071; DNA polymerase III subunit delta' 537584..538510 Staphylococcus aureus subsp. aureus COL 3237101 YP_185415.1 CDS SACOL0527 NC_002951.2 538511 539314 D identified by match to protein family HMM PF04468; hypothetical protein 538511..539314 Staphylococcus aureus subsp. aureus COL 3237102 YP_185416.1 CDS SACOL0528 NC_002951.2 539331 539678 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 539331..539678 Staphylococcus aureus subsp. aureus COL 3237103 YP_185417.1 CDS SACOL0529 NC_002951.2 539952 540677 D hypothetical protein 539952..540677 Staphylococcus aureus subsp. aureus COL 3237104 YP_185418.1 CDS SACOL0530 NC_002951.2 540670 540918 D identified by match to protein family HMM PF01541; hypothetical protein 540670..540918 Staphylococcus aureus subsp. aureus COL 3237105 YP_185419.1 CDS SACOL0531 NC_002951.2 540920 541759 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 540920..541759 Staphylococcus aureus subsp. aureus COL 3237106 YP_185420.1 CDS SACOL0532 NC_002951.2 541784 541939 R hypothetical protein complement(541784..541939) Staphylococcus aureus subsp. aureus COL 3237107 YP_185421.1 CDS metS NC_002951.2 542044 544017 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 542044..544017 Staphylococcus aureus subsp. aureus COL 3237108 YP_185422.1 CDS SACOL0534 NC_002951.2 544048 544821 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family deoxyribonuclease 544048..544821 Staphylococcus aureus subsp. aureus COL 3237109 YP_185423.1 CDS SACOL0535 NC_002951.2 544988 545524 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; hypothetical protein 544988..545524 Staphylococcus aureus subsp. aureus COL 3237110 YP_185424.1 CDS ksgA NC_002951.2 545535 546428 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 545535..546428 Staphylococcus aureus subsp. aureus COL 3237111 YP_185425.1 CDS SACOL0537 NC_002951.2 546528 546791 D identified by similarity to EGAD:13222; match to protein family HMM PF06257; hypothetical protein 546528..546791 Staphylococcus aureus subsp. aureus COL 3237112 YP_185426.1 CDS ipk NC_002951.2 547101 547949 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 547101..547949 Staphylococcus aureus subsp. aureus COL 3237113 YP_185427.1 CDS purR NC_002951.2 547963 548787 D identified by similarity to EGAD:16043; match to protein family HMM PF00156; match to protein family HMM TIGR01743; pur operon repressor 547963..548787 Staphylococcus aureus subsp. aureus COL 3237114 YP_185428.1 CDS SACOL0540 NC_002951.2 548804 549184 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 548804..549184 Staphylococcus aureus subsp. aureus COL 3238252 YP_185429.1 CDS spoVG NC_002951.2 549256 549558 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 549256..549558 Staphylococcus aureus subsp. aureus COL 3238406 YP_185430.1 CDS SACOL0542 NC_002951.2 549748 549879 D hypothetical protein 549748..549879 Staphylococcus aureus subsp. aureus COL 3238520 YP_185431.1 CDS glmU NC_002951.2 549902 551254 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 549902..551254 Staphylococcus aureus subsp. aureus COL 3238384 YP_185432.1 CDS prsA NC_002951.2 551401 552366 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 551401..552366 Staphylococcus aureus subsp. aureus COL 3238302 YP_185433.1 CDS rplY NC_002951.2 552516 553169 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 552516..553169 Staphylococcus aureus subsp. aureus COL 3238045 YP_185434.1 CDS pth NC_002951.2 553480 554052 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 553480..554052 Staphylococcus aureus subsp. aureus COL 3238366 YP_185435.1 CDS mfd NC_002951.2 554052 557558 D identified by similarity to EGAD:14131; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 554052..557558 Staphylococcus aureus subsp. aureus COL 3238490 YP_185436.1 CDS SACOL0548 NC_002951.2 557548 559074 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 557548..559074 Staphylococcus aureus subsp. aureus COL 3238257 YP_185437.1 CDS SACOL0549 NC_002951.2 559074 560267 D identified by match to protein family HMM PF00590; match to protein family HMM PF03819; tetrapyrrole methylase 559074..560267 Staphylococcus aureus subsp. aureus COL 3238372 YP_185438.1 CDS SACOL0550 NC_002951.2 560264 560527 D identified by match to protein family HMM PF01479; S4 domain-containing protein 560264..560527 Staphylococcus aureus subsp. aureus COL 3238327 YP_185439.1 CDS SACOL0551 NC_002951.2 560545 560937 D identified by similarity to EGAD:12437; match to protein family HMM PF04977; cell-division protein divIC 560545..560937 Staphylococcus aureus subsp. aureus COL 3238149 YP_185440.1 CDS SACOL0552 NC_002951.2 561042 561443 D identified by similarity to SP:P80870; match to protein family HMM PF00575; hypothetical protein 561042..561443 Staphylococcus aureus subsp. aureus COL 3237120 YP_185441.1 CDS SACOL0553 NC_002951.2 561623 562918 D identified by similarity to EGAD:18381; match to protein family HMM PF01171; hypothetical protein 561623..562918 Staphylococcus aureus subsp. aureus COL 3237121 YP_185442.1 CDS hpt NC_002951.2 562923 563462 D identified by similarity to EGAD:18056; match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 562923..563462 Staphylococcus aureus subsp. aureus COL 3237122 YP_185443.1 CDS SACOL0555 NC_002951.2 563719 565812 D identified by similarity to EGAD:13183; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH 563719..565812 Staphylococcus aureus subsp. aureus COL 3237123 YP_185444.1 CDS hslO NC_002951.2 566041 566922 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 566041..566922 Staphylococcus aureus subsp. aureus COL 3237124 YP_185445.1 CDS cysK NC_002951.2 567101 568033 D identified by similarity to SP:P37887; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase 567101..568033 Staphylococcus aureus subsp. aureus COL 3237125 YP_185446.1 CDS folP NC_002951.2 568249 569052 D identified by similarity to SP:O05701; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 568249..569052 Staphylococcus aureus subsp. aureus COL 3237126 YP_185447.1 CDS folB NC_002951.2 569030 569395 D identified by similarity to SP:P56740; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 569030..569395 Staphylococcus aureus subsp. aureus COL 3237127 YP_185448.1 CDS folK NC_002951.2 569392 569868 D identified by similarity to EGAD:18680; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 569392..569868 Staphylococcus aureus subsp. aureus COL 3237128 YP_185449.1 CDS SACOL0561 NC_002951.2 570262 570354 D hypothetical protein 570262..570354 Staphylococcus aureus subsp. aureus COL 3237129 YP_185450.1 CDS lysS NC_002951.2 570407 571894 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 570407..571894 Staphylococcus aureus subsp. aureus COL 3237130 YP_185451.1 CDS SACOL0563 NC_002951.2 583479 584861 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(583479..584861) Staphylococcus aureus subsp. aureus COL 3237613 YP_185452.1 CDS SACOL0564 NC_002951.2 584965 585852 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 584965..585852 Staphylococcus aureus subsp. aureus COL 3237614 YP_185453.1 CDS SACOL0565 NC_002951.2 585856 586416 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 585856..586416 Staphylococcus aureus subsp. aureus COL 3237615 YP_185454.1 CDS nupC NC_002951.2 586624 587838 R identified by similarity to EGAD:6216; match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; nucleoside permease NupC complement(586624..587838) Staphylococcus aureus subsp. aureus COL 3237616 YP_185455.1 CDS ctsR NC_002951.2 587996 588457 D identified by similarity to EGAD:23972; match to protein family HMM PF05848; transcriptional regulator CtsR 587996..588457 Staphylococcus aureus subsp. aureus COL 3237617 YP_185456.1 CDS SACOL0568 NC_002951.2 588476 589042 D identified by similarity to GP:7007431; match to protein family HMM PF02151; hypothetical protein 588476..589042 Staphylococcus aureus subsp. aureus COL 3238526 YP_185457.1 CDS SACOL0569 NC_002951.2 589032 590039 D identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 589032..590039 Staphylococcus aureus subsp. aureus COL 3238527 YP_185458.1 CDS radA NC_002951.2 592995 594359 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 592995..594359 Staphylococcus aureus subsp. aureus COL 3238529 YP_185459.1 CDS SACOL0573 NC_002951.2 594384 595457 D identified by similarity to OMNI:NTL01BH0107; match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein 594384..595457 Staphylococcus aureus subsp. aureus COL 3238530 YP_185460.1 CDS gltX NC_002951.2 596014 597468 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 596014..597468 Staphylococcus aureus subsp. aureus COL 3238712 YP_185461.1 CDS cysE NC_002951.2 597897 598538 D identified by similarity to EGAD:98265; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 597897..598538 Staphylococcus aureus subsp. aureus COL 3235986 YP_185462.1 CDS cysS NC_002951.2 598522 599922 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 598522..599922 Staphylococcus aureus subsp. aureus COL 3235987 YP_185463.1 CDS SACOL0577 NC_002951.2 599915 600319 D identified by similarity to EGAD:108189; match to protein family HMM PF05948; hypothetical protein 599915..600319 Staphylococcus aureus subsp. aureus COL 3235988 YP_185464.1 CDS SACOL0578 NC_002951.2 600327 601073 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; RNA methyltransferase 600327..601073 Staphylococcus aureus subsp. aureus COL 3235989 YP_185465.1 CDS SACOL0579 NC_002951.2 601073 601597 D identified by similarity to EGAD:14028; match to protein family HMM PF05991; hypothetical protein 601073..601597 Staphylococcus aureus subsp. aureus COL 3236214 YP_185466.1 CDS SACOL0580 NC_002951.2 601678 602247 D identified by similarity to OMNI:EF0049; match to protein family HMM PF04542; hypothetical protein 601678..602247 Staphylococcus aureus subsp. aureus COL 3236215 YP_185467.1 CDS secE NC_002951.2 602561 602743 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 602561..602743 Staphylococcus aureus subsp. aureus COL 3236216 YP_185468.1 CDS nusG NC_002951.2 602756 603304 D identified by similarity to EGAD:9622; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription antitermination protein 602756..603304 Staphylococcus aureus subsp. aureus COL 3236217 YP_185469.1 CDS rplK NC_002951.2 603476 603907 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 603476..603907 Staphylococcus aureus subsp. aureus COL 3236218 YP_185470.1 CDS rplA NC_002951.2 604115 604807 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 604115..604807 Staphylococcus aureus subsp. aureus COL 3236230 YP_185471.1 CDS rplJ NC_002951.2 605079 605579 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 605079..605579 Staphylococcus aureus subsp. aureus COL 3236231 YP_185472.1 CDS rplL NC_002951.2 605622 605990 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 605622..605990 Staphylococcus aureus subsp. aureus COL 3236232 YP_185473.1 CDS SACOL0587 NC_002951.2 606165 606773 D identified by similarity to GP:10172736; match to protein family HMM PF05175; hypothetical protein 606165..606773 Staphylococcus aureus subsp. aureus COL 3236233 YP_185474.1 CDS rpoB NC_002951.2 606988 610539 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 606988..610539 Staphylococcus aureus subsp. aureus COL 3236234 YP_185475.1 CDS rpoC NC_002951.2 610676 614299 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 610676..614299 Staphylococcus aureus subsp. aureus COL 3236179 YP_185476.1 CDS SACOL0590 NC_002951.2 614436 614690 D in Bacillus subtilis this non-essential protein associates with the ribosome; ribosomal protein L7Ae-like 614436..614690 Staphylococcus aureus subsp. aureus COL 3236180 YP_185477.1 CDS rpsL NC_002951.2 614788 615201 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 614788..615201 Staphylococcus aureus subsp. aureus COL 3236181 YP_185478.1 CDS rpsG NC_002951.2 615267 615737 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 615267..615737 Staphylococcus aureus subsp. aureus COL 3236182 YP_185479.1 CDS fusA NC_002951.2 615860 617941 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 615860..617941 Staphylococcus aureus subsp. aureus COL 3236183 YP_185480.1 CDS tuf NC_002951.2 618158 619342 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 618158..619342 Staphylococcus aureus subsp. aureus COL 3236433 YP_185481.1 CDS SACOL0595 NC_002951.2 619624 620799 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase complement(619624..620799) Staphylococcus aureus subsp. aureus COL 3236434 YP_185482.1 CDS SACOL0596 NC_002951.2 620970 622157 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 620970..622157 Staphylococcus aureus subsp. aureus COL 3236435 YP_185483.1 CDS SACOL0597 NC_002951.2 622423 623301 D Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA 622423..623301 Staphylococcus aureus subsp. aureus COL 3236436 YP_185484.1 CDS SACOL0598 NC_002951.2 623461 625098 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 623461..625098 Staphylococcus aureus subsp. aureus COL 3236437 YP_185485.1 CDS SACOL0599 NC_002951.2 625312 626277 D identified by similarity to OMNI:NT01TA1215; hypothetical protein 625312..626277 Staphylococcus aureus subsp. aureus COL 3236200 YP_185486.1 CDS ilvE NC_002951.2 626612 627688 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 626612..627688 Staphylococcus aureus subsp. aureus COL 3236201 YP_185487.1 CDS SACOL0601 NC_002951.2 627661 627834 D hypothetical protein 627661..627834 Staphylococcus aureus subsp. aureus COL 3236202 YP_185488.1 CDS SACOL0602 NC_002951.2 627938 628621 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 627938..628621 Staphylococcus aureus subsp. aureus COL 3236203 YP_185489.1 CDS SACOL0603 NC_002951.2 628737 629399 R identified by match to protein family HMM PF01712; deoxynucleoside kinase complement(628737..629399) Staphylococcus aureus subsp. aureus COL 3236204 YP_185490.1 CDS SACOL0604 NC_002951.2 629392 630009 R identified by match to protein family HMM PF01712; deoxynucleoside kinase complement(629392..630009) Staphylococcus aureus subsp. aureus COL 3236258 YP_185491.1 CDS SACOL0606 NC_002951.2 630693 631562 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 630693..631562 Staphylococcus aureus subsp. aureus COL 3236351 YP_185492.1 CDS SACOL0607 NC_002951.2 631583 632149 D identified by similarity to GP:10281002; match to protein family HMM PF03358; hypothetical protein 631583..632149 Staphylococcus aureus subsp. aureus COL 3236352 YP_185493.1 CDS sdrC NC_002951.2 632579 635422 D identified by similarity to GP:3550592; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrC protein 632579..635422 Staphylococcus aureus subsp. aureus COL 3236353 YP_185494.1 CDS sdrD NC_002951.2 635789 639934 D identified by similarity to GP:3550594; match to protein family HMM PF00746; match to protein family HMM PF02412; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrD protein 635789..639934 Staphylococcus aureus subsp. aureus COL 3236072 YP_185495.1 CDS sdrE NC_002951.2 640328 643828 D identified by similarity to GP:3550596; match to protein family HMM PF00746; match to protein family HMM PF02412; match to protein family HMM PF04650; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; sdrE protein 640328..643828 Staphylococcus aureus subsp. aureus COL 3236073 YP_185496.1 CDS SACOL0611 NC_002951.2 643947 645419 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 643947..645419 Staphylococcus aureus subsp. aureus COL 3236074 YP_185497.1 CDS SACOL0612 NC_002951.2 645543 647033 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(645543..647033) Staphylococcus aureus subsp. aureus COL 3236075 YP_185498.1 CDS SACOL0613 NC_002951.2 647315 648193 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase complement(647315..648193) Staphylococcus aureus subsp. aureus COL 3236076 YP_185499.1 CDS SACOL0614 NC_002951.2 648206 648871 R identified by similarity to GP:10175943; match to protein family HMM PF02585; hypothetical protein complement(648206..648871) Staphylococcus aureus subsp. aureus COL 3236168 YP_185500.1 CDS SACOL0615 NC_002951.2 648885 649247 R identified by similarity to GP:10175942; hypothetical protein complement(648885..649247) Staphylococcus aureus subsp. aureus COL 3236740 YP_185501.1 CDS nagB NC_002951.2 649523 650281 D identified by similarity to EGAD:107403; match to protein family HMM PF01182; glucosamine-6-phosphate isomerase 649523..650281 Staphylococcus aureus subsp. aureus COL 3236741 YP_185502.1 CDS SACOL0617 NC_002951.2 650358 650990 D identified by similarity to EGAD:30794; match to protein family HMM PF00215; hexulose-6-phosphate synthase 650358..650990 Staphylococcus aureus subsp. aureus COL 3236742 YP_185503.1 CDS SACOL0618 NC_002951.2 650992 651540 D identified by match to protein family HMM PF01380; SIS domain-containing protein 650992..651540 Staphylococcus aureus subsp. aureus COL 3236743 YP_185504.1 CDS SACOL0619 NC_002951.2 651644 652300 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD superfamily hydrolase 651644..652300 Staphylococcus aureus subsp. aureus COL 3236744 YP_185505.1 CDS proP NC_002951.2 652802 654202 D identified by similarity to EGAD:8124; match to protein family HMM PF00083; match to protein family HMM PF07690; osmoprotectant proline transporter 652802..654202 Staphylococcus aureus subsp. aureus COL 3238378 YP_185506.1 CDS SACOL0621 NC_002951.2 654746 656122 D identified by match to protein family HMM PF00501; substrate--CoA ligase 654746..656122 Staphylococcus aureus subsp. aureus COL 3238379 YP_185507.1 CDS atoB NC_002951.2 656124 657263 D identified by similarity to EGAD:91218; similarity to EGAD:173607; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 656124..657263 Staphylococcus aureus subsp. aureus COL 3238380 YP_185508.1 CDS SACOL0623 NC_002951.2 657238 657603 D hypothetical protein 657238..657603 Staphylococcus aureus subsp. aureus COL 3238381 YP_185509.1 CDS SACOL0624 NC_002951.2 657606 657875 D identified by similarity to GB:AAO03945.1; hypothetical protein 657606..657875 Staphylococcus aureus subsp. aureus COL 3238382 YP_185510.1 CDS SACOL0625 NC_002951.2 658076 658243 R hypothetical protein complement(658076..658243) Staphylococcus aureus subsp. aureus COL 3238383 YP_185511.1 CDS thiD1 NC_002951.2 658750 659580 R identified by similarity to EGAD:21177; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(658750..659580) Staphylococcus aureus subsp. aureus COL 3238551 YP_185512.1 CDS ung NC_002951.2 659764 660420 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 659764..660420 Staphylococcus aureus subsp. aureus COL 3238552 YP_185513.1 CDS SACOL0628 NC_002951.2 660421 660801 D identified by similarity to GB:AAO03949.1; hypothetical protein 660421..660801 Staphylococcus aureus subsp. aureus COL 3238553 YP_185514.1 CDS SACOL0629 NC_002951.2 660934 661302 D identified by similarity to EGAD:17353; match to protein family HMM PF04241; hypothetical protein 660934..661302 Staphylococcus aureus subsp. aureus COL 3238554 YP_185515.1 CDS SACOL0630 NC_002951.2 661423 662907 D identified by match to protein family HMM PF00324; amino acid permease 661423..662907 Staphylococcus aureus subsp. aureus COL 3238555 YP_185516.1 CDS SACOL0631 NC_002951.2 663049 663501 R identified by similarity to GP:10172694; hypothetical protein complement(663049..663501) Staphylococcus aureus subsp. aureus COL 3238421 YP_185517.1 CDS SACOL0632 NC_002951.2 663514 664278 R identified by match to protein family HMM PF06738; hypothetical protein complement(663514..664278) Staphylococcus aureus subsp. aureus COL 3238422 YP_185518.1 CDS SACOL0633 NC_002951.2 664827 665579 R identified by similarity to EGAD:20638; match to protein family HMM PF06778; heme peroxidase complement(664827..665579) Staphylococcus aureus subsp. aureus COL 3238423 YP_185519.1 CDS eutD NC_002951.2 665747 666733 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 665747..666733 Staphylococcus aureus subsp. aureus COL 3238424 YP_185520.1 CDS SACOL0635 NC_002951.2 666736 667572 D lipoate-protein ligase A family protein 666736..667572 Staphylococcus aureus subsp. aureus COL 3238425 YP_185521.1 CDS mvk NC_002951.2 668159 669079 D identified by similarity to GP:9937364; match to protein family HMM PF00288; match to protein family HMM TIGR00549; mevalonate kinase 668159..669079 Staphylococcus aureus subsp. aureus COL 3238171 YP_185522.1 CDS mvaD NC_002951.2 669084 670067 D identified by similarity to GP:14246359; match to protein family HMM PF00288; match to protein family HMM TIGR01240; mevalonate diphosphate decarboxylase 669084..670067 Staphylococcus aureus subsp. aureus COL 3238172 YP_185523.1 CDS SACOL0638 NC_002951.2 670080 671156 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR01220; phosphomevalonate kinase 670080..671156 Staphylococcus aureus subsp. aureus COL 3238051 YP_185524.1 CDS SACOL0639 NC_002951.2 671333 671674 D identified by similarity to GP:10176446; hypothetical protein 671333..671674 Staphylococcus aureus subsp. aureus COL 3238519 YP_185525.1 CDS SACOL0640 NC_002951.2 671727 673049 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; pyridine nucleotide-disulfide oxidoreductase complement(671727..673049) Staphylococcus aureus subsp. aureus COL 3238584 YP_185526.1 CDS SACOL0641 NC_002951.2 673036 673476 R identified by similarity to GP:4512355; hypothetical protein complement(673036..673476) Staphylococcus aureus subsp. aureus COL 3238415 YP_185527.1 CDS SACOL0642 NC_002951.2 673534 673635 D hypothetical protein 673534..673635 Staphylococcus aureus subsp. aureus COL 3238266 YP_185528.1 CDS SACOL0643 NC_002951.2 674101 675510 D identified by similarity to GP:11230708; hypothetical protein 674101..675510 Staphylococcus aureus subsp. aureus COL 3238138 YP_185529.1 CDS SACOL0644 NC_002951.2 675514 676140 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 675514..676140 Staphylococcus aureus subsp. aureus COL 3238516 YP_185530.1 CDS SACOL0645 NC_002951.2 676266 676907 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 676266..676907 Staphylococcus aureus subsp. aureus COL 3238034 YP_185531.1 CDS SACOL0646 NC_002951.2 676995 677612 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 676995..677612 Staphylococcus aureus subsp. aureus COL 3238390 YP_185532.1 CDS SACOL0647 NC_002951.2 677687 678316 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 677687..678316 Staphylococcus aureus subsp. aureus COL 3238593 YP_185533.1 CDS SACOL0648 NC_002951.2 678512 679132 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 678512..679132 Staphylococcus aureus subsp. aureus COL 3238000 YP_185534.1 CDS SACOL0649 NC_002951.2 679263 679904 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 679263..679904 Staphylococcus aureus subsp. aureus COL 3238566 YP_185535.1 CDS SACOL0650 NC_002951.2 679951 680580 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 679951..680580 Staphylococcus aureus subsp. aureus COL 3238495 YP_185536.1 CDS SACOL0651 NC_002951.2 681033 681662 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 681033..681662 Staphylococcus aureus subsp. aureus COL 3238419 YP_185537.1 CDS SACOL0652 NC_002951.2 681777 682427 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 681777..682427 Staphylococcus aureus subsp. aureus COL 3238250 YP_185538.1 CDS SACOL0653 NC_002951.2 682464 683099 D identified by similarity to GP:10173594; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 682464..683099 Staphylococcus aureus subsp. aureus COL 3238177 YP_185539.1 CDS SACOL0654 NC_002951.2 683334 683960 D identified by similarity to GP:11230710; match to protein family HMM PF04276; match to protein family HMM TIGR01218; hypothetical protein 683334..683960 Staphylococcus aureus subsp. aureus COL 3238201 YP_185540.1 CDS SACOL0655 NC_002951.2 684230 685168 D identified by similarity to EGAD:30452; match to protein family HMM PF00248; aldo/keto reductase oxidoreductase 684230..685168 Staphylococcus aureus subsp. aureus COL 3238144 YP_185541.1 CDS SACOL0656 NC_002951.2 685379 685915 D identified by similarity to EGAD:107983; hypothetical protein 685379..685915 Staphylococcus aureus subsp. aureus COL 3238186 YP_185542.1 CDS SACOL0658 NC_002951.2 686600 687895 D identified by match to protein family HMM PF01966; HD domain-containing protein 686600..687895 Staphylococcus aureus subsp. aureus COL 3238558 YP_185543.1 CDS SACOL0659 NC_002951.2 687923 688444 D identified by similarity to EGAD:108331; hypothetical protein 687923..688444 Staphylococcus aureus subsp. aureus COL 3238192 YP_185544.1 CDS adhP NC_002951.2 688943 689953 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 688943..689953 Staphylococcus aureus subsp. aureus COL 3238251 YP_185545.1 CDS SACOL0661 NC_002951.2 690028 690135 D hypothetical protein 690028..690135 Staphylococcus aureus subsp. aureus COL 3238121 YP_185546.1 CDS SACOL0662 NC_002951.2 690216 690644 D identified by similarity to EGAD:108312; hypothetical protein 690216..690644 Staphylococcus aureus subsp. aureus COL 3238233 YP_185547.1 CDS argS NC_002951.2 690641 692302 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 690641..692302 Staphylococcus aureus subsp. aureus COL 3238408 YP_185548.1 CDS SACOL0664 NC_002951.2 692691 693326 D identified by match to protein family HMM PF00730; endonuclease III 692691..693326 Staphylococcus aureus subsp. aureus COL 3238050 YP_185549.1 CDS SACOL0665 NC_002951.2 693705 694592 D identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein 693705..694592 Staphylococcus aureus subsp. aureus COL 3238565 YP_185550.1 CDS SACOL0666 NC_002951.2 694740 695690 D identified by match to protein family HMM PF01032; iron compound ABC transporter permease 694740..695690 Staphylococcus aureus subsp. aureus COL 3238642 YP_185551.1 CDS SACOL0667 NC_002951.2 695745 696464 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase 695745..696464 Staphylococcus aureus subsp. aureus COL 3238498 YP_185552.1 CDS SACOL0668 NC_002951.2 696448 697248 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 696448..697248 Staphylococcus aureus subsp. aureus COL 3238412 YP_185553.1 CDS SACOL0669 NC_002951.2 697384 697890 D identified by similarity to GB:AAO03984.1; hypothetical protein 697384..697890 Staphylococcus aureus subsp. aureus COL 3238294 YP_185554.1 CDS SACOL0670 NC_002951.2 698052 698768 D identified by similarity to GB:AAO03985.1; hypothetical protein 698052..698768 Staphylococcus aureus subsp. aureus COL 3238411 YP_185555.1 CDS SACOL0671 NC_002951.2 698937 699725 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 698937..699725 Staphylococcus aureus subsp. aureus COL 3238544 YP_185556.1 CDS sarA NC_002951.2 699976 700350 R identified by similarity to EGAD:42500; match to protein family HMM TIGR01889; accessory regulator A complement(699976..700350) Staphylococcus aureus subsp. aureus COL 3238478 YP_185557.1 CDS SACOL0673 NC_002951.2 700498 700617 R hypothetical protein complement(700498..700617) Staphylococcus aureus subsp. aureus COL 3237116 YP_185558.1 CDS SACOL0675 NC_002951.2 701298 702191 R identified by similarity to GB:AAO03989.1; match to protein family HMM PF04657; hypothetical protein complement(701298..702191) Staphylococcus aureus subsp. aureus COL 3238003 YP_185559.1 CDS SACOL0676 NC_002951.2 702422 702646 R identified by similarity to GB:AAO03992.1; hypothetical protein complement(702422..702646) Staphylococcus aureus subsp. aureus COL 3238289 YP_185560.1 CDS SACOL0677 NC_002951.2 702663 702866 R identified by similarity to GB:AAO03993.1; hypothetical protein complement(702663..702866) Staphylococcus aureus subsp. aureus COL 3238594 YP_185561.1 CDS SACOL0678 NC_002951.2 703025 703585 D identified by similarity to EGAD:9824; match to protein family HMM PF00589; phage integrase integrase/recombinase 703025..703585 Staphylococcus aureus subsp. aureus COL 3238465 YP_185562.1 CDS SACOL0679 NC_002951.2 703604 706006 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 703604..706006 Staphylococcus aureus subsp. aureus COL 3237886 YP_185563.1 CDS SACOL0680 NC_002951.2 705993 706418 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 705993..706418 Staphylococcus aureus subsp. aureus COL 3237831 YP_185564.1 CDS SACOL0681 NC_002951.2 706415 706759 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 706415..706759 Staphylococcus aureus subsp. aureus COL 3237268 YP_185565.1 CDS SACOL0682 NC_002951.2 706749 708245 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit D 706749..708245 Staphylococcus aureus subsp. aureus COL 3238173 YP_185566.1 CDS SACOL0684 NC_002951.2 708246 708728 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 708246..708728 Staphylococcus aureus subsp. aureus COL 3238174 YP_185567.1 CDS SACOL0685 NC_002951.2 708725 709027 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F 708725..709027 Staphylococcus aureus subsp. aureus COL 3238175 YP_185568.1 CDS SACOL0686 NC_002951.2 709002 709439 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G 709002..709439 Staphylococcus aureus subsp. aureus COL 3238176 YP_185569.1 CDS SACOL0687 NC_002951.2 709779 711821 D identified by match to protein family HMM PF00999; Na+/H+ antiporter 709779..711821 Staphylococcus aureus subsp. aureus COL 3236720 YP_185570.1 CDS SACOL0688 NC_002951.2 712981 713910 R identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein complement(712981..713910) Staphylococcus aureus subsp. aureus COL 3236721 YP_185571.1 CDS SACOL0689 NC_002951.2 713907 714743 R identified by match to protein family HMM PF00950; ABC transporter permease complement(713907..714743) Staphylococcus aureus subsp. aureus COL 3236722 YP_185572.1 CDS SACOL0690 NC_002951.2 714737 715480 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(714737..715480) Staphylococcus aureus subsp. aureus COL 3236723 YP_185573.1 CDS sirR NC_002951.2 715602 716246 D identified by similarity to GP:1617434; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023; iron-dependent repressor 715602..716246 Staphylococcus aureus subsp. aureus COL 3236724 YP_185574.1 CDS SACOL0692 NC_002951.2 716326 717078 R identified by similarity to GB:AAO04006.1; hypothetical protein complement(716326..717078) Staphylococcus aureus subsp. aureus COL 3236582 YP_185575.1 CDS tagA NC_002951.2 717314 718078 D identified by similarity to EGAD:19699; match to protein family HMM PF03808; match to protein family HMM TIGR00696; teichoic acid biosynthesis protein 717314..718078 Staphylococcus aureus subsp. aureus COL 3236583 YP_185576.1 CDS SACOL0694 NC_002951.2 718139 718933 R with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit complement(718139..718933) Staphylococcus aureus subsp. aureus COL 3236584 YP_185577.1 CDS SACOL0695 NC_002951.2 719280 720092 D identified by similarity to EGAD:30975; match to protein family HMM PF01061; tagG protein, teichoic acid ABC transporter protein 719280..720092 Staphylococcus aureus subsp. aureus COL 3236585 YP_185578.1 CDS tagB NC_002951.2 720191 721294 D identified by similarity to EGAD:16235; match to protein family HMM PF04464; teichoic acid biosynthesis protein B 720191..721294 Staphylococcus aureus subsp. aureus COL 3236586 YP_185579.1 CDS tagX NC_002951.2 721291 722352 D identified by similarity to GP:1913906; match to protein family HMM PF00535; teichoic acid biosynthesis protein X 721291..722352 Staphylococcus aureus subsp. aureus COL 3236587 YP_185580.1 CDS tagD NC_002951.2 722415 722813 D identified by similarity to EGAD:16695; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01518; glycerol-3-phosphate cytidylyltransferase 722415..722813 Staphylococcus aureus subsp. aureus COL 3236188 YP_185581.1 CDS pbp4 NC_002951.2 722930 724225 R identified by match to protein family HMM PF00144; match to protein family HMM PF00768; penicillin-binding protein 4 complement(722930..724225) Staphylococcus aureus subsp. aureus COL 3236189 YP_185582.1 CDS abcA NC_002951.2 724646 726373 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 724646..726373 Staphylococcus aureus subsp. aureus COL 3236190 YP_185583.1 CDS SACOL0701 NC_002951.2 726732 727961 D identified by match to protein family HMM PF01773; match to protein family HMM PF07662; nucleoside permease NupC 726732..727961 Staphylococcus aureus subsp. aureus COL 3236191 YP_185584.1 CDS SACOL0702 NC_002951.2 728216 728308 D hypothetical protein 728216..728308 Staphylococcus aureus subsp. aureus COL 3236192 YP_185585.1 CDS SACOL0703 NC_002951.2 728486 729319 D identified by similarity to EGAD:108622; match to protein family HMM PF02588; hypothetical protein 728486..729319 Staphylococcus aureus subsp. aureus COL 3236240 YP_185586.1 CDS SACOL0704 NC_002951.2 729601 730398 D identified by similarity to EGAD:37683; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 729601..730398 Staphylococcus aureus subsp. aureus COL 3236241 YP_185587.1 CDS SACOL0705 NC_002951.2 730434 731438 D identified by similarity to EGAD:23253; match to protein family HMM PF01032; iron compound ABC transporter permease 730434..731438 Staphylococcus aureus subsp. aureus COL 3236242 YP_185588.1 CDS SACOL0706 NC_002951.2 731435 732451 D identified by similarity to EGAD:37682; match to protein family HMM PF01032; iron compound ABC transporter permease 731435..732451 Staphylococcus aureus subsp. aureus COL 3236243 YP_185589.1 CDS SACOL0707 NC_002951.2 732688 733653 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 732688..733653 Staphylococcus aureus subsp. aureus COL 3236244 YP_185590.1 CDS SACOL0708 NC_002951.2 733695 734279 D identified by similarity to OMNI:NTL01BH3400; match to protein family HMM PF02734; match to protein family HMM TIGR02365; DAK2 domain-containing protein 733695..734279 Staphylococcus aureus subsp. aureus COL 3236603 YP_185591.1 CDS SACOL0709 NC_002951.2 734272 734634 D identified by similarity to OMNI:NTL01LL0257; match to protein family HMM PF03610; match to protein family HMM TIGR02364; phosphotransferase mannnose-specific family component IIA 734272..734634 Staphylococcus aureus subsp. aureus COL 3236604 YP_185592.1 CDS SACOL0710 NC_002951.2 734750 735247 D identified by similarity to OMNI:SA0710; hypothetical protein 734750..735247 Staphylococcus aureus subsp. aureus COL 3236605 YP_185593.1 CDS SACOL0711 NC_002951.2 735703 736770 D identified by similarity to EGAD:107607; match to protein family HMM PF05525; hypothetical protein 735703..736770 Staphylococcus aureus subsp. aureus COL 3236606 YP_185594.1 CDS SACOL0712 NC_002951.2 736921 737964 D lipase/esterase 736921..737964 Staphylococcus aureus subsp. aureus COL 3236607 YP_185595.1 CDS SACOL0713 NC_002951.2 738293 738721 D hypothetical protein 738293..738721 Staphylococcus aureus subsp. aureus COL 3236608 YP_185596.1 CDS SACOL0714 NC_002951.2 738930 739436 R identified by match to protein family HMM PF00583; acetyltransferase complement(738930..739436) Staphylococcus aureus subsp. aureus COL 3236595 YP_185597.1 CDS SACOL0715 NC_002951.2 739549 740472 D identified by similarity to GB:AAO04023.1; hypothetical protein 739549..740472 Staphylococcus aureus subsp. aureus COL 3236596 YP_185598.1 CDS SACOL0716 NC_002951.2 740479 741162 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 740479..741162 Staphylococcus aureus subsp. aureus COL 3236597 YP_185599.1 CDS SACOL0717 NC_002951.2 741155 742195 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 741155..742195 Staphylococcus aureus subsp. aureus COL 3236598 YP_185600.1 CDS SACOL0718 NC_002951.2 742339 743100 D identified by similarity to EGAD:108398; match to protein family HMM PF00005; ABC transporter ATP-binding protein 742339..743100 Staphylococcus aureus subsp. aureus COL 3236599 YP_185601.1 CDS SACOL0720 NC_002951.2 743090 744979 D ABC transporter permease 743090..744979 Staphylococcus aureus subsp. aureus COL 3236600 YP_185602.1 CDS SACOL0721 NC_002951.2 745704 746321 D identified by match to protein family HMM PF01865; hypothetical protein 745704..746321 Staphylococcus aureus subsp. aureus COL 3236424 YP_185603.1 CDS SACOL0722 NC_002951.2 746337 747344 D identified by match to protein family HMM PF01384; phosphate transporter family protein 746337..747344 Staphylococcus aureus subsp. aureus COL 3236425 YP_185604.1 CDS SACOL0723 NC_002951.2 747932 748729 R identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein complement(747932..748729) Staphylococcus aureus subsp. aureus COL 3236426 YP_185605.1 CDS SACOL0724 NC_002951.2 749090 749734 D identified by similarity to GB:AAO04031.1; hypothetical protein 749090..749734 Staphylococcus aureus subsp. aureus COL 3236427 YP_185606.1 CDS SACOL0725 NC_002951.2 750431 752581 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 750431..752581 Staphylococcus aureus subsp. aureus COL 3236428 YP_185607.1 CDS sarX NC_002951.2 752661 753086 D identified by match to protein family HMM TIGR01889; hypothetical protein 752661..753086 Staphylococcus aureus subsp. aureus COL 3236429 YP_185608.1 CDS SACOL0727 NC_002951.2 753276 753992 D identified by similarity to OMNI:NTL01BH3262; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 753276..753992 Staphylococcus aureus subsp. aureus COL 3236056 YP_185609.1 CDS SACOL0728 NC_002951.2 753992 754465 D identified by similarity to EGAD:48132; match to protein family HMM PF06172; hypothetical protein 753992..754465 Staphylococcus aureus subsp. aureus COL 3236057 YP_185610.1 CDS SACOL0730 NC_002951.2 754818 755462 D identified by similarity to EGAD:173390; match to protein family HMM PF04167; hypothetical protein 754818..755462 Staphylococcus aureus subsp. aureus COL 3236058 YP_185611.1 CDS SACOL0731 NC_002951.2 755578 756444 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 755578..756444 Staphylococcus aureus subsp. aureus COL 3236059 YP_185612.1 CDS SACOL0733 NC_002951.2 756783 758003 D identified by similarity to EGAD:19549; similarity to EGAD:173457; match to protein family HMM PF07690; sugar efflux transporter 756783..758003 Staphylococcus aureus subsp. aureus COL 3236060 YP_185613.1 CDS SACOL0734 NC_002951.2 758000 758488 D identified by similarity to OMNI:NTL01BH3813; match to protein family HMM PF04306; hypothetical protein 758000..758488 Staphylococcus aureus subsp. aureus COL 3238099 YP_185614.1 CDS SACOL0735 NC_002951.2 758587 759276 R identified by similarity to GB:AAO04043.1; hypothetical protein complement(758587..759276) Staphylococcus aureus subsp. aureus COL 3238100 YP_185615.1 CDS SACOL0736 NC_002951.2 759403 759846 D identified by match to protein family HMM PF00583; acetyltransferase 759403..759846 Staphylococcus aureus subsp. aureus COL 3238101 YP_185616.1 CDS SACOL0737 NC_002951.2 759913 760308 D identified by similarity to GB:AAO04044.1; hypothetical protein 759913..760308 Staphylococcus aureus subsp. aureus COL 3238102 YP_185617.1 CDS SACOL0738 NC_002951.2 760446 760745 D identified by similarity to GB:AAO04045.1; hypothetical protein 760446..760745 Staphylococcus aureus subsp. aureus COL 3238103 YP_185618.1 CDS SACOL0739 NC_002951.2 760825 761367 D identified by match to protein family HMM PF00583; acetyltransferase 760825..761367 Staphylococcus aureus subsp. aureus COL 3238104 YP_185619.1 CDS SACOL0740 NC_002951.2 761463 762029 R identified by similarity to OMNI:NTL01BH3087; match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(761463..762029) Staphylococcus aureus subsp. aureus COL 3237145 YP_185620.1 CDS SACOL0741 NC_002951.2 762031 762489 R identified by similarity to EGAD:42455; match to protein family HMM PF02639; hypothetical protein complement(762031..762489) Staphylococcus aureus subsp. aureus COL 3237146 YP_185621.1 CDS SACOL0742 NC_002951.2 762492 763175 R hypothetical protein complement(762492..763175) Staphylococcus aureus subsp. aureus COL 3237147 YP_185622.1 CDS uppP NC_002951.2 763347 764222 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(763347..764222) Staphylococcus aureus subsp. aureus COL 3237148 YP_185623.1 CDS SACOL0744 NC_002951.2 764441 766072 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 764441..766072 Staphylococcus aureus subsp. aureus COL 3237149 YP_185624.1 CDS SACOL0745 NC_002951.2 766069 767742 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein 766069..767742 Staphylococcus aureus subsp. aureus COL 3237854 YP_185625.1 CDS norR NC_002951.2 767869 768312 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(767869..768312) Staphylococcus aureus subsp. aureus COL 3237855 YP_185626.1 CDS SACOL0747 NC_002951.2 768539 769465 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein/P47K family protein 768539..769465 Staphylococcus aureus subsp. aureus COL 3237856 YP_185627.1 CDS SACOL0748 NC_002951.2 769568 770476 D identified by match to protein family HMM PF00248; aldo/keto reductase oxidoreductase 769568..770476 Staphylococcus aureus subsp. aureus COL 3237857 YP_185628.1 CDS SACOL0749 NC_002951.2 770511 770798 D identified by similarity to GB:AAO04057.1; hypothetical protein 770511..770798 Staphylococcus aureus subsp. aureus COL 3237858 YP_185629.1 CDS SACOL0750 NC_002951.2 771081 772634 D identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 771081..772634 Staphylococcus aureus subsp. aureus COL 3237859 YP_185630.1 CDS SACOL0751 NC_002951.2 772720 774093 D identified by match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 772720..774093 Staphylococcus aureus subsp. aureus COL 3237789 YP_185631.1 CDS SACOL0752 NC_002951.2 774529 775146 R identified by similarity to EGAD:47605; match to protein family HMM PF07099; hypothetical protein complement(774529..775146) Staphylococcus aureus subsp. aureus COL 3237790 YP_185632.1 CDS SACOL0753 NC_002951.2 775332 775754 R identified by similarity to EGAD:104132; match to protein family HMM PF03479; hypothetical protein complement(775332..775754) Staphylococcus aureus subsp. aureus COL 3237791 YP_185633.1 CDS norA NC_002951.2 775963 777129 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00880; multi drug resistance protein (norA) 775963..777129 Staphylococcus aureus subsp. aureus COL 3237792 YP_185634.1 CDS SACOL0755 NC_002951.2 777422 777874 D identified by similarity to GB:AAO04064.1; hypothetical protein 777422..777874 Staphylococcus aureus subsp. aureus COL 3237793 YP_185635.1 CDS SACOL0756 NC_002951.2 778048 778530 D identified by similarity to SP:P36922; match to protein family HMM PF04073; match to protein family HMM TIGR00011; ebsC protein 778048..778530 Staphylococcus aureus subsp. aureus COL 3237826 YP_185636.1 CDS SACOL0757 NC_002951.2 778780 779544 D identified by match to protein family HMM PF00455; DeoR family transcriptional regulator 778780..779544 Staphylococcus aureus subsp. aureus COL 3237827 YP_185637.1 CDS fruK NC_002951.2 779541 780461 D identified by similarity to GP:9501780; similarity to EGAD:107874; match to protein family HMM PF00294; 1-phosphofructokinase 779541..780461 Staphylococcus aureus subsp. aureus COL 3237828 YP_185638.1 CDS nagA NC_002951.2 782732 783913 D identified by similarity to EGAD:107401; match to protein family HMM PF01979; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 782732..783913 Staphylococcus aureus subsp. aureus COL 3237830 YP_185639.1 CDS SACOL0762 NC_002951.2 784134 785483 D identified by similarity to OMNI:SA0762; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hemolysin 784134..785483 Staphylococcus aureus subsp. aureus COL 3237796 YP_185640.1 CDS SACOL0763 NC_002951.2 785705 786544 D identified by match to protein family HMM PF00248; aldo/keto reductase oxidoreductase 785705..786544 Staphylococcus aureus subsp. aureus COL 3237797 YP_185641.1 CDS SACOL0764 NC_002951.2 786676 787659 D identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein 786676..787659 Staphylococcus aureus subsp. aureus COL 3237798 YP_185642.1 CDS saeS NC_002951.2 787731 788786 R identified by similarity to GP:5726301; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase SaeS complement(787731..788786) Staphylococcus aureus subsp. aureus COL 3237799 YP_185643.1 CDS saeR NC_002951.2 788786 789472 R identified by similarity to GP:5726300; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SaeR complement(788786..789472) Staphylococcus aureus subsp. aureus COL 3237800 YP_185644.1 CDS SACOL0767 NC_002951.2 789447 789920 R identified by similarity to GP:10174872; hypothetical protein complement(789447..789920) Staphylococcus aureus subsp. aureus COL 3237924 YP_185645.1 CDS SACOL0768 NC_002951.2 790262 790702 R identified by similarity to GB:AAO04078.1; hypothetical protein complement(790262..790702) Staphylococcus aureus subsp. aureus COL 3237925 YP_185646.1 CDS SACOL0769 NC_002951.2 790982 791566 R identified by similarity to GB:AAO04081.1; hypothetical protein complement(790982..791566) Staphylococcus aureus subsp. aureus COL 3237926 YP_185647.1 CDS SACOL0770 NC_002951.2 791665 792378 R identified by match to protein family HMM PF04055; radical activating enzyme family protein complement(791665..792378) Staphylococcus aureus subsp. aureus COL 3237927 YP_185648.1 CDS SACOL0771 NC_002951.2 792382 792801 R identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase complement(792382..792801) Staphylococcus aureus subsp. aureus COL 3237928 YP_185649.1 CDS SACOL0772 NC_002951.2 792803 793471 R identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein complement(792803..793471) Staphylococcus aureus subsp. aureus COL 3237929 YP_185650.1 CDS pabA NC_002951.2 793822 794415 D identified by similarity to EGAD:6981; match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase, glutamine amidotransferase, component II 793822..794415 Staphylococcus aureus subsp. aureus COL 3237801 YP_185651.1 CDS SACOL0776 NC_002951.2 796518 797228 D identified by similarity to GP:10174435; match to protein family HMM PF02682; hypothetical protein 796518..797228 Staphylococcus aureus subsp. aureus COL 3237803 YP_185652.1 CDS SACOL0777 NC_002951.2 797212 798216 D identified by match to protein family HMM PF02626; hypothetical protein 797212..798216 Staphylococcus aureus subsp. aureus COL 3237804 YP_185653.1 CDS SACOL0778 NC_002951.2 798690 800630 D identified by match to protein family HMM PF00884; sulfatase 798690..800630 Staphylococcus aureus subsp. aureus COL 3237805 YP_185654.1 CDS SACOL0779 NC_002951.2 800907 802784 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 800907..802784 Staphylococcus aureus subsp. aureus COL 3237783 YP_185655.1 CDS recQ1 NC_002951.2 802796 804577 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 802796..804577 Staphylococcus aureus subsp. aureus COL 3237784 YP_185656.1 CDS SACOL0781 NC_002951.2 804799 805776 D identified by similarity to EGAD:37691; match to protein family HMM PF00005; osmoprotectant ABC transporter ATP-binding protein 804799..805776 Staphylococcus aureus subsp. aureus COL 3237785 YP_185657.1 CDS opuBB NC_002951.2 805769 807283 D identified by similarity to EGAD:37692; match to protein family HMM PF00528; match to protein family HMM PF04069; osmoprotectant ABC transporter permease 805769..807283 Staphylococcus aureus subsp. aureus COL 3237786 YP_185658.1 CDS hisC NC_002951.2 807523 808581 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 807523..808581 Staphylococcus aureus subsp. aureus COL 3237787 YP_185659.1 CDS SACOL0785 NC_002951.2 808932 809474 D identified by similarity to EGAD:107442; match to protein family HMM PF06941; hypothetical protein 808932..809474 Staphylococcus aureus subsp. aureus COL 3236290 YP_185660.1 CDS SACOL0786 NC_002951.2 809587 809748 D hypothetical protein 809587..809748 Staphylococcus aureus subsp. aureus COL 3236291 YP_185661.1 CDS SACOL0787 NC_002951.2 810154 811071 R identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147; hypothetical protein complement(810154..811071) Staphylococcus aureus subsp. aureus COL 3236292 YP_185662.1 CDS SACOL0788 NC_002951.2 811341 812846 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; proton-dependent oligopeptide transporter family protein complement(811341..812846) Staphylococcus aureus subsp. aureus COL 3236293 YP_185663.1 CDS SACOL0789 NC_002951.2 813187 813687 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(813187..813687) Staphylococcus aureus subsp. aureus COL 3236294 YP_185664.1 CDS SACOL0790 NC_002951.2 813707 814573 R identified by match to protein family HMM PF00892; integral membrane domain-containing protein complement(813707..814573) Staphylococcus aureus subsp. aureus COL 3236295 YP_185665.1 CDS SACOL0790.1 NC_002951.2 814958 815224 D identified by similarity to GP:14329707; ribonucleoside-diphosphate reductase 2, NrdH-redoxin 814958..815224 Staphylococcus aureus subsp. aureus COL 3237119 YP_185666.1 CDS nrdI NC_002951.2 815374 815772 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 815374..815772 Staphylococcus aureus subsp. aureus COL 3237911 YP_185667.1 CDS nrdE NC_002951.2 815735 817840 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 815735..817840 Staphylococcus aureus subsp. aureus COL 3237912 YP_185668.1 CDS nrdF NC_002951.2 817958 818929 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 817958..818929 Staphylococcus aureus subsp. aureus COL 3237913 YP_185669.1 CDS SACOL0794 NC_002951.2 819062 819166 D hypothetical protein 819062..819166 Staphylococcus aureus subsp. aureus COL 3237914 YP_185670.1 CDS SACOL0796 NC_002951.2 819637 820608 D identified by similarity to EGAD:37681; match to protein family HMM PF01032; iron compound ABC transporter permease 819637..820608 Staphylococcus aureus subsp. aureus COL 3237915 YP_185671.1 CDS SACOL0797 NC_002951.2 820595 821551 D identified by similarity to EGAD:37682; match to protein family HMM PF01032; iron compound ABC transporter permease 820595..821551 Staphylococcus aureus subsp. aureus COL 3236989 YP_185672.1 CDS SACOL0798 NC_002951.2 821548 822309 D identified by similarity to EGAD:37683; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 821548..822309 Staphylococcus aureus subsp. aureus COL 3236990 YP_185673.1 CDS SACOL0799 NC_002951.2 822428 823456 D identified by similarity to EGAD:22102; match to protein family HMM PF01497; transferrin receptor 822428..823456 Staphylococcus aureus subsp. aureus COL 3236991 YP_185674.1 CDS SACOL0800 NC_002951.2 823773 824087 R identified by similarity to EGAD:53989; match to protein family HMM PF05495; hypothetical protein complement(823773..824087) Staphylococcus aureus subsp. aureus COL 3236992 YP_185675.1 CDS murB NC_002951.2 824105 825028 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(824105..825028) Staphylococcus aureus subsp. aureus COL 3236993 YP_185676.1 CDS SACOL0802 NC_002951.2 825155 825673 R identified by similarity to GB:AAO04118.1; match to protein family HMM PF04229; hypothetical protein complement(825155..825673) Staphylococcus aureus subsp. aureus COL 3236994 YP_185677.1 CDS SACOL0803 NC_002951.2 825793 826671 D hypothetical protein 825793..826671 Staphylococcus aureus subsp. aureus COL 3237591 YP_185678.1 CDS SACOL0804 NC_002951.2 826825 827145 D identified by similarity to EGAD:30569; hypothetical protein 826825..827145 Staphylococcus aureus subsp. aureus COL 3237592 YP_185679.1 CDS SACOL0805 NC_002951.2 827570 828694 D identified by similarity to EGAD:13841; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 827570..828694 Staphylococcus aureus subsp. aureus COL 3237593 YP_185680.1 CDS pepT NC_002951.2 828883 830109 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(828883..830109) Staphylococcus aureus subsp. aureus COL 3237594 YP_185681.1 CDS SACOL0807 NC_002951.2 830123 830617 R identified by similarity to GP:10172694; hypothetical protein complement(830123..830617) Staphylococcus aureus subsp. aureus COL 3237595 YP_185682.1 CDS SACOL0808 NC_002951.2 830635 831396 R identified by match to protein family HMM PF06738; hypothetical protein complement(830635..831396) Staphylococcus aureus subsp. aureus COL 3236167 YP_185683.1 CDS SACOL0809 NC_002951.2 831592 832662 R identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254; diguanylate cyclase complement(831592..832662) Staphylococcus aureus subsp. aureus COL 3236259 YP_185684.1 CDS SACOL0810 NC_002951.2 832980 834035 D Possible involvement in methicillin resistance.identified by similarity to EGAD:23076; match to protein family HMM PF00953; glycosyl transferase, group 4 family protein 832980..834035 Staphylococcus aureus subsp. aureus COL 3236260 YP_185685.1 CDS SACOL0811 NC_002951.2 834205 834846 R identified by similarity to OMNI:NTL01BH3636; match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein complement(834205..834846) Staphylococcus aureus subsp. aureus COL 3236261 YP_185686.1 CDS SACOL0812 NC_002951.2 834990 835856 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 834990..835856 Staphylococcus aureus subsp. aureus COL 3236262 YP_185687.1 CDS SACOL0813 NC_002951.2 836220 837302 D identified by similarity to EGAD:24480; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; comf operon protein 1 836220..837302 Staphylococcus aureus subsp. aureus COL 3236263 YP_185688.1 CDS SACOL0814 NC_002951.2 837295 837969 D identified by similarity to EGAD:11495; hypothetical protein 837295..837969 Staphylococcus aureus subsp. aureus COL 3237326 YP_185689.1 CDS SACOL0815 NC_002951.2 838030 838602 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 838030..838602 Staphylococcus aureus subsp. aureus COL 3236329 YP_185690.1 CDS secA NC_002951.2 839016 841547 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 839016..841547 Staphylococcus aureus subsp. aureus COL 3236839 YP_185691.1 CDS SACOL0817 NC_002951.2 841589 841693 D hypothetical protein 841589..841693 Staphylococcus aureus subsp. aureus COL 3237743 YP_185692.1 CDS prfB NC_002951.2 841862 842972 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 join(841862..841933,841935..842972) Staphylococcus aureus subsp. aureus COL 3237992 YP_185693.1 CDS SACOL0819 NC_002951.2 843126 843233 D hypothetical protein 843126..843233 Staphylococcus aureus subsp. aureus COL 3236080 YP_185694.1 CDS SACOL0820 NC_002951.2 843381 844220 D identified by match to protein family HMM PF01476; match to protein family HMM PF05257; LysM domain-containing protein 843381..844220 Staphylococcus aureus subsp. aureus COL 3237908 YP_185695.1 CDS SACOL0821 NC_002951.2 844394 845044 D HD domain-containing protein 844394..845044 Staphylococcus aureus subsp. aureus COL 3237571 YP_185696.1 CDS SACOL0822 NC_002951.2 845041 845277 D identified by similarity to OMNI:NT01BS4098; hypothetical protein 845041..845277 Staphylococcus aureus subsp. aureus COL 3236875 YP_185697.1 CDS uvrB NC_002951.2 845540 847531 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 845540..847531 Staphylococcus aureus subsp. aureus COL 3237964 YP_185698.1 CDS uvrA NC_002951.2 847539 850385 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 847539..850385 Staphylococcus aureus subsp. aureus COL 3237897 YP_185699.1 CDS hprK NC_002951.2 850992 851924 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 850992..851924 Staphylococcus aureus subsp. aureus COL 3237761 YP_185700.1 CDS lgt NC_002951.2 851930 852769 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 851930..852769 Staphylococcus aureus subsp. aureus COL 3237753 YP_185701.1 CDS SACOL0827 NC_002951.2 852777 853262 D identified by match to protein family HMM PF00132; acetyltransferase 852777..853262 Staphylococcus aureus subsp. aureus COL 3238318 YP_185702.1 CDS SACOL0828 NC_002951.2 853270 854709 D identified by match to protein family HMM PF00515; TPR domain-containing protein 853270..854709 Staphylococcus aureus subsp. aureus COL 3238466 YP_185703.1 CDS trxB NC_002951.2 854776 855711 D identified by similarity to GP:6434033; match to protein family HMM PF00070; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 854776..855711 Staphylococcus aureus subsp. aureus COL 3238649 YP_185704.1 CDS SACOL0830 NC_002951.2 856421 857332 D identified by similarity to EGAD:107355; match to protein family HMM PF03668; hypothetical protein 856421..857332 Staphylococcus aureus subsp. aureus COL 3238109 YP_185705.1 CDS SACOL0831 NC_002951.2 857329 858324 D identified by similarity to GP:10176192; match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 857329..858324 Staphylococcus aureus subsp. aureus COL 3238503 YP_185706.1 CDS SACOL0832 NC_002951.2 858434 859378 D identified by similarity to EGAD:107351; match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 858434..859378 Staphylococcus aureus subsp. aureus COL 3238205 YP_185707.1 CDS clpP NC_002951.2 859951 860538 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 859951..860538 Staphylococcus aureus subsp. aureus COL 3238532 YP_185708.1 CDS SACOL0834 NC_002951.2 860781 861683 R identified by match to protein family HMM TIGR01777; hypothetical protein complement(860781..861683) Staphylococcus aureus subsp. aureus COL 3238107 YP_185709.1 CDS SACOL0835 NC_002951.2 862387 863016 D identified by similarity to GB:AAO04151.1; hypothetical protein 862387..863016 Staphylococcus aureus subsp. aureus COL 3238695 YP_185710.1 CDS SACOL0836 NC_002951.2 863205 863351 R hypothetical protein complement(863205..863351) Staphylococcus aureus subsp. aureus COL 3238702 YP_185711.1 CDS gapR NC_002951.2 863776 864789 D identified by similarity to OMNI:SA0837; match to protein family HMM PF04198; glycolytic operon regulator 863776..864789 Staphylococcus aureus subsp. aureus COL 3238376 YP_185712.1 CDS gapA1 NC_002951.2 864842 865852 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 864842..865852 Staphylococcus aureus subsp. aureus COL 3238183 YP_185713.1 CDS pgk NC_002951.2 865991 867181 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 865991..867181 Staphylococcus aureus subsp. aureus COL 3238653 YP_185714.1 CDS tpiA NC_002951.2 867303 868064 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 867303..868064 Staphylococcus aureus subsp. aureus COL 3238661 YP_185715.1 CDS pgm NC_002951.2 868067 869584 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 868067..869584 Staphylococcus aureus subsp. aureus COL 3238263 YP_185716.1 CDS eno NC_002951.2 869714 871018 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 869714..871018 Staphylococcus aureus subsp. aureus COL 3238461 YP_185717.1 CDS SACOL0843 NC_002951.2 871358 871816 D identified by similarity to GB:AAO04159.1; hypothetical protein 871358..871816 Staphylococcus aureus subsp. aureus COL 3238683 YP_185718.1 CDS secG NC_002951.2 871883 872116 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 871883..872116 Staphylococcus aureus subsp. aureus COL 3238677 YP_185719.1 CDS est NC_002951.2 872232 872972 D identified by similarity to EGAD:18058; carboxylesterase 872232..872972 Staphylococcus aureus subsp. aureus COL 3238682 YP_185720.1 CDS SACOL0846 NC_002951.2 873006 875378 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; VacB/RNase II family exoribonuclease 873006..875378 Staphylococcus aureus subsp. aureus COL 3238592 YP_185721.1 CDS smpB NC_002951.2 875400 875864 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 875400..875864 Staphylococcus aureus subsp. aureus COL 3238583 YP_185722.1 CDS SACOL0848 NC_002951.2 876638 876919 D hypothetical protein 876638..876919 Staphylococcus aureus subsp. aureus COL 3238533 YP_185723.1 CDS SACOL0849 NC_002951.2 877186 877509 R hypothetical protein complement(877186..877509) Staphylococcus aureus subsp. aureus COL 3238660 YP_185724.1 CDS SACOL0850 NC_002951.2 877525 877671 R hypothetical protein complement(877525..877671) Staphylococcus aureus subsp. aureus COL 3238502 YP_185725.1 CDS SACOL0851 NC_002951.2 877863 878591 R hypothetical protein complement(877863..878591) Staphylococcus aureus subsp. aureus COL 3238317 YP_185726.1 CDS SACOL0853 NC_002951.2 879027 879182 D hypothetical protein 879027..879182 Staphylococcus aureus subsp. aureus COL 3238108 YP_185727.1 CDS SACOL0854 NC_002951.2 879190 879711 D hypothetical protein 879190..879711 Staphylococcus aureus subsp. aureus COL 3238044 YP_185728.1 CDS SACOL0855 NC_002951.2 879850 880380 D identified by match to protein family HMM PF00583; acetyltransferase 879850..880380 Staphylococcus aureus subsp. aureus COL 3238518 YP_185729.1 CDS clfA NC_002951.2 880643 883444 D identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; clumping factor A 880643..883444 Staphylococcus aureus subsp. aureus COL 3238303 YP_185730.1 CDS SACOL0857 NC_002951.2 883665 885191 D identified by similarity to EGAD:7465; staphylocoagulase precursor 883665..885191 Staphylococcus aureus subsp. aureus COL 3238595 YP_185731.1 CDS empbp NC_002951.2 885542 886564 D secretory extracellular matrix and plasma binding protein 885542..886564 Staphylococcus aureus subsp. aureus COL 3238492 YP_185732.1 CDS SACOL0859 NC_002951.2 886899 887369 D hypothetical protein 886899..887369 Staphylococcus aureus subsp. aureus COL 3238290 YP_185733.1 CDS nuc NC_002951.2 887710 888396 D identified by similarity to EGAD:8282; match to protein family HMM PF00565; thermonuclease precursor 887710..888396 Staphylococcus aureus subsp. aureus COL 3238436 YP_185734.1 CDS SACOL0861 NC_002951.2 888753 888953 D identified by match to protein family HMM PF00313; CSD family cold shock protein 888753..888953 Staphylococcus aureus subsp. aureus COL 3238193 YP_185735.1 CDS SACOL0862 NC_002951.2 889449 889667 R hypothetical protein complement(889449..889667) Staphylococcus aureus subsp. aureus COL 3238550 YP_185736.1 CDS SACOL0863 NC_002951.2 889729 890013 R identified by similarity to GB:AAO04177.1; hypothetical protein complement(889729..890013) Staphylococcus aureus subsp. aureus COL 3238143 YP_185737.1 CDS SACOL0864 NC_002951.2 890101 890670 R hypothetical protein complement(890101..890670) Staphylococcus aureus subsp. aureus COL 3238009 YP_185738.1 CDS SACOL0865 NC_002951.2 891075 891335 R hypothetical protein complement(891075..891335) Staphylococcus aureus subsp. aureus COL 3238453 YP_185739.1 CDS SACOL0866 NC_002951.2 891640 891744 R hypothetical protein complement(891640..891744) Staphylococcus aureus subsp. aureus COL 3238510 YP_185740.1 CDS SACOL0868 NC_002951.2 891876 892112 R identified by similarity to GB:AAO04183.1; hypothetical protein complement(891876..892112) Staphylococcus aureus subsp. aureus COL 3238199 YP_185741.1 CDS SACOL0869 NC_002951.2 892328 892918 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 892328..892918 Staphylococcus aureus subsp. aureus COL 3238141 YP_185742.1 CDS SACOL0870 NC_002951.2 892991 893608 R identified by match to protein family HMM PF01810; LysE/YggA family protein complement(892991..893608) Staphylococcus aureus subsp. aureus COL 3238020 YP_185743.1 CDS SACOL0871 NC_002951.2 893763 894257 R hypothetical protein complement(893763..894257) Staphylococcus aureus subsp. aureus COL 3238368 YP_185744.1 CDS SACOL0872 NC_002951.2 894656 895078 R identified by match to protein family HMM PF02566; OsmC/Ohr family protein complement(894656..895078) Staphylococcus aureus subsp. aureus COL 3238279 YP_185745.1 CDS aroD NC_002951.2 895226 895942 D catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 895226..895942 Staphylococcus aureus subsp. aureus COL 3238019 YP_185746.1 CDS SACOL0874 NC_002951.2 896025 896564 D identified by match to protein family HMM PF00881; nitroreductase 896025..896564 Staphylococcus aureus subsp. aureus COL 3238367 YP_185747.1 CDS SACOL0875 NC_002951.2 896714 897034 R identified by match to protein family HMM PF00085; thioredoxin complement(896714..897034) Staphylococcus aureus subsp. aureus COL 3238350 YP_185748.1 CDS SACOL0876 NC_002951.2 897178 897534 D identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 897178..897534 Staphylococcus aureus subsp. aureus COL 3238606 YP_185749.1 CDS gcvH NC_002951.2 897692 898072 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 897692..898072 Staphylococcus aureus subsp. aureus COL 3238420 YP_185750.1 CDS SACOL0879 NC_002951.2 898251 899129 D identified by similarity to EGAD:107990; hypothetical protein 898251..899129 Staphylococcus aureus subsp. aureus COL 3238470 YP_185751.1 CDS SACOL0880 NC_002951.2 899871 900257 D identified by match to protein family HMM PF01751; TOPRIM domain-containing protein 899871..900257 Staphylococcus aureus subsp. aureus COL 3238130 YP_185752.1 CDS SACOL0881 NC_002951.2 900250 900546 D hypothetical protein 900250..900546 Staphylococcus aureus subsp. aureus COL 3238521 YP_185753.1 CDS SACOL0882 NC_002951.2 900796 901821 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 900796..901821 Staphylococcus aureus subsp. aureus COL 3238499 YP_185754.1 CDS SACOL0883 NC_002951.2 901814 902509 D identified by match to protein family HMM PF00528; ABC transporter permease 901814..902509 Staphylococcus aureus subsp. aureus COL 3238371 YP_185755.1 CDS SACOL0884 NC_002951.2 902527 903348 D identified by match to protein family HMM PF03180; ABC transporter substrate-binding protein 902527..903348 Staphylococcus aureus subsp. aureus COL 3238301 YP_185756.1 CDS SACOL0885 NC_002951.2 903491 904711 R identified by similarity to EGAD:72831; match to protein family HMM PF00589; pathogenicity island protein, integrase complement(903491..904711) Staphylococcus aureus subsp. aureus COL 3238598 YP_185757.1 CDS sek NC_002951.2 904800 905528 R identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin complement(904800..905528) Staphylococcus aureus subsp. aureus COL 3238540 YP_185758.1 CDS sei NC_002951.2 905552 906280 R identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin type I complement(905552..906280) Staphylococcus aureus subsp. aureus COL 3237308 YP_185759.1 CDS SACOL0888 NC_002951.2 906350 906781 R pathogenicity island, lipoprotein complement(906350..906781) Staphylococcus aureus subsp. aureus COL 3236109 YP_185760.1 CDS SACOL0889 NC_002951.2 906798 907256 R identified by similarity to GP:12697827; similarity to GP:14246619; match to protein family HMM PF06114; pathogenicity island protein complement(906798..907256) Staphylococcus aureus subsp. aureus COL 3237133 YP_185761.1 CDS SACOL0890 NC_002951.2 907268 907600 R identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator complement(907268..907600) Staphylococcus aureus subsp. aureus COL 3236162 YP_185762.1 CDS SACOL0891 NC_002951.2 907793 908056 D identified by match to protein family HMM PF01381; transcriptional regulator 907793..908056 Staphylococcus aureus subsp. aureus COL 3236126 YP_185763.1 CDS SACOL0892 NC_002951.2 908049 908321 D identified by similarity to GP:2689561; pathogenicity island protein 908049..908321 Staphylococcus aureus subsp. aureus COL 3237883 YP_185764.1 CDS SACOL0893 NC_002951.2 908333 908479 D identified by similarity to GP:14247798; pathogenicity island protein 908333..908479 Staphylococcus aureus subsp. aureus COL 3237979 YP_185765.1 CDS SACOL0894 NC_002951.2 908472 908681 D identified by similarity to OMNI:NTL01SA1904; pathogenicity island protein 908472..908681 Staphylococcus aureus subsp. aureus COL 3236164 YP_185766.1 CDS SACOL0895 NC_002951.2 908684 909004 D identified by similarity to GP:11094390; match to protein family HMM PF07342; pathogenicity island protein 908684..909004 Staphylococcus aureus subsp. aureus COL 3236166 YP_185767.1 CDS SACOL0896 NC_002951.2 909068 909937 D identified by similarity to GP:11094389; pathogenicity island protein 909068..909937 Staphylococcus aureus subsp. aureus COL 3236165 YP_185768.1 CDS SACOL0897 NC_002951.2 909954 911411 D identified by match to protein family HMM PF05272; hypothetical protein 909954..911411 Staphylococcus aureus subsp. aureus COL 3237134 YP_185769.1 CDS SACOL0898 NC_002951.2 911712 912074 D identified by similarity to GP:11094386; pathogenicity island protein 911712..912074 Staphylococcus aureus subsp. aureus COL 3236093 YP_185770.1 CDS SACOL0899 NC_002951.2 912076 912360 D identified by similarity to GP:2689555; pathogenicity island protein 912076..912360 Staphylococcus aureus subsp. aureus COL 3237767 YP_185771.1 CDS SACOL0900 NC_002951.2 912357 912998 D identified by similarity to GP:11094385; pathogenicity island protein 912357..912998 Staphylococcus aureus subsp. aureus COL 3237768 YP_185772.1 CDS SACOL0901 NC_002951.2 913515 913856 D identified by similarity to GP:11094384; pathogenicity island protein 913515..913856 Staphylococcus aureus subsp. aureus COL 3237769 YP_185773.1 CDS SACOL0902 NC_002951.2 913868 914446 D identified by similarity to GP:2689553; pathogenicity island protein 913868..914446 Staphylococcus aureus subsp. aureus COL 3237770 YP_185774.1 CDS SACOL0903 NC_002951.2 914464 914682 D identified by similarity to GP:2689552; pathogenicity island protein 914464..914682 Staphylococcus aureus subsp. aureus COL 3237771 YP_185775.1 CDS SACOL0904 NC_002951.2 914733 915260 D identified by similarity to GP:2689551; pathogenicity island protein 914733..915260 Staphylococcus aureus subsp. aureus COL 3237772 YP_185776.1 CDS SACOL0905 NC_002951.2 915263 915604 D identified by similarity to GP:11094380; pathogenicity island protein 915263..915604 Staphylococcus aureus subsp. aureus COL 3237774 YP_185777.1 CDS SACOL0906 NC_002951.2 915601 916170 D identified by similarity to EGAD:37809; match to protein family HMM PF03592; phage terminase 915601..916170 Staphylococcus aureus subsp. aureus COL 3237775 YP_185778.1 CDS seb NC_002951.2 916478 917278 D identified by similarity to GP:3212819; match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin B 916478..917278 Staphylococcus aureus subsp. aureus COL 3237776 YP_185779.1 CDS SACOL0908 NC_002951.2 917356 917913 R hypothetical protein complement(917356..917913) Staphylococcus aureus subsp. aureus COL 3237777 YP_185780.1 CDS SACOL0909 NC_002951.2 918286 918438 D hypothetical protein 918286..918438 Staphylococcus aureus subsp. aureus COL 3237778 YP_185781.1 CDS SACOL0910 NC_002951.2 918509 918619 D hypothetical protein 918509..918619 Staphylococcus aureus subsp. aureus COL 3237754 YP_185782.1 CDS SACOL0911 NC_002951.2 918606 918806 D hypothetical protein 918606..918806 Staphylococcus aureus subsp. aureus COL 3237755 YP_185783.1 CDS SACOL0912 NC_002951.2 919637 919831 D identified by similarity to EGAD:108069; match to protein family HMM PF05532; hypothetical protein 919637..919831 Staphylococcus aureus subsp. aureus COL 3237756 YP_185784.1 CDS SACOL0913 NC_002951.2 920064 920915 R identified by similarity to GP:10174688; match to protein family HMM PF04018; hypothetical protein complement(920064..920915) Staphylococcus aureus subsp. aureus COL 3237757 YP_185785.1 CDS SACOL0914 NC_002951.2 921243 922004 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 921243..922004 Staphylococcus aureus subsp. aureus COL 3237758 YP_185786.1 CDS sufD NC_002951.2 922102 923409 D identified by similarity to EGAD:109075; match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 922102..923409 Staphylococcus aureus subsp. aureus COL 3237759 YP_185787.1 CDS SACOL0916 NC_002951.2 923524 924765 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; SufS subfamily cysteine desulfurase 923524..924765 Staphylococcus aureus subsp. aureus COL 3237762 YP_185788.1 CDS SACOL0917 NC_002951.2 924755 925219 D identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU domain-containing protein 924755..925219 Staphylococcus aureus subsp. aureus COL 3237763 YP_185789.1 CDS sufB NC_002951.2 925370 926767 D identified by similarity to EGAD:109032; match to protein family HMM PF01458; match to protein family HMM TIGR01980; FeS assembly protein SufB 925370..926767 Staphylococcus aureus subsp. aureus COL 3237764 YP_185790.1 CDS SACOL0919 NC_002951.2 926954 927091 D hypothetical protein 926954..927091 Staphylococcus aureus subsp. aureus COL 3237765 YP_185791.1 CDS SACOL0920 NC_002951.2 927097 927411 R hypothetical protein complement(927097..927411) Staphylococcus aureus subsp. aureus COL 3237766 YP_185792.1 CDS SACOL0921 NC_002951.2 927776 928816 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein 927776..928816 Staphylococcus aureus subsp. aureus COL 3237744 YP_185793.1 CDS SACOL0922 NC_002951.2 928830 929897 D identified by similarity to GP:10173821; match to protein family HMM PF03060; hypothetical protein 928830..929897 Staphylococcus aureus subsp. aureus COL 3237745 YP_185794.1 CDS SACOL0924 NC_002951.2 930110 930958 D identified by similarity to EGAD:109000; match to protein family HMM PF01904; hypothetical protein 930110..930958 Staphylococcus aureus subsp. aureus COL 3237746 YP_185795.1 CDS SACOL0925 NC_002951.2 930971 931798 D identified by similarity to GP:10176077; match to protein family HMM PF01925; hypothetical protein 930971..931798 Staphylococcus aureus subsp. aureus COL 3237747 YP_185796.1 CDS SACOL0926 NC_002951.2 931825 933144 D identified by match to protein family HMM PF00149; 5'-nucleotidase 931825..933144 Staphylococcus aureus subsp. aureus COL 3237748 YP_185797.1 CDS lipA NC_002951.2 933228 934145 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 933228..934145 Staphylococcus aureus subsp. aureus COL 3237749 YP_185798.1 CDS SACOL0928 NC_002951.2 934266 934658 D identified by similarity to OMNI:NTL01BH3437; match to protein family HMM PF06265; hypothetical protein 934266..934658 Staphylococcus aureus subsp. aureus COL 3237898 YP_185799.1 CDS SACOL0929 NC_002951.2 934737 934994 R identified by similarity to GP:10176055; hypothetical protein complement(934737..934994) Staphylococcus aureus subsp. aureus COL 3237899 YP_185800.1 CDS SACOL0930 NC_002951.2 935101 935535 D identified by similarity to GP:10176053; match to protein family HMM PF01934; hypothetical protein 935101..935535 Staphylococcus aureus subsp. aureus COL 3237900 YP_185801.1 CDS SACOL0931 NC_002951.2 935535 936314 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460; HAD superfamily hydrolase 935535..936314 Staphylococcus aureus subsp. aureus COL 3237901 YP_185802.1 CDS SACOL0932 NC_002951.2 936347 937306 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 936347..937306 Staphylococcus aureus subsp. aureus COL 3237902 YP_185803.1 CDS SACOL0933 NC_002951.2 937560 937670 D hypothetical protein 937560..937670 Staphylococcus aureus subsp. aureus COL 3237725 YP_185804.1 CDS SACOL0934 NC_002951.2 937718 937870 D identified by similarity to GB:AAO04220.1; hypothetical protein 937718..937870 Staphylococcus aureus subsp. aureus COL 3237726 YP_185805.1 CDS dltA NC_002951.2 937886 939343 D transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 937886..939343 Staphylococcus aureus subsp. aureus COL 3237727 YP_185806.1 CDS dltB NC_002951.2 939340 940554 D identified by similarity to EGAD:22430; match to protein family HMM PF03062; DltB protein 939340..940554 Staphylococcus aureus subsp. aureus COL 3237728 YP_185807.1 CDS dltC NC_002951.2 940572 940808 D D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 940572..940808 Staphylococcus aureus subsp. aureus COL 3237729 YP_185808.1 CDS dltD NC_002951.2 940805 941980 D identified by similarity to EGAD:16580; match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918; DltD protein 940805..941980 Staphylococcus aureus subsp. aureus COL 3237730 YP_185809.1 CDS SACOL0939 NC_002951.2 942243 942464 R identified by match to protein family HMM PF01106; NifU domain-containing protein complement(942243..942464) Staphylococcus aureus subsp. aureus COL 3237735 YP_185810.1 CDS SACOL0940 NC_002951.2 942586 942909 D identified by similarity to EGAD:108969; match to protein family HMM PF07315; hypothetical protein 942586..942909 Staphylococcus aureus subsp. aureus COL 3237736 YP_185811.1 CDS SACOL0942 NC_002951.2 944349 944585 D identified by similarity to EGAD:108965; match to protein family HMM PF07293; hypothetical protein 944349..944585 Staphylococcus aureus subsp. aureus COL 3237738 YP_185812.1 CDS SACOL0943 NC_002951.2 944598 944957 D identified by similarity to EGAD:108962; match to protein family HMM PF01521; match to protein family HMM TIGR00049; hypothetical protein 944598..944957 Staphylococcus aureus subsp. aureus COL 3237739 YP_185813.1 CDS SACOL0944 NC_002951.2 945411 946619 D identified by match to protein family HMM PF00070; NADH dehydrogenase 945411..946619 Staphylococcus aureus subsp. aureus COL 3237720 YP_185814.1 CDS SACOL0945 NC_002951.2 946750 948225 D identified by similarity to EGAD:17761; match to protein family HMM PF00883; cytosol aminopeptidase 946750..948225 Staphylococcus aureus subsp. aureus COL 3237721 YP_185815.1 CDS SACOL0946 NC_002951.2 948636 949952 D identified by similarity to GP:10175982; match to protein family HMM PF03553; Na+/H+ antiporter family protein 948636..949952 Staphylococcus aureus subsp. aureus COL 3237722 YP_185816.1 CDS SACOL0947 NC_002951.2 949971 950345 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 949971..950345 Staphylococcus aureus subsp. aureus COL 3237723 YP_185817.1 CDS SACOL0948 NC_002951.2 950401 951555 R identified by similarity to GB:AAO04236.1; hypothetical protein complement(950401..951555) Staphylococcus aureus subsp. aureus COL 3237724 YP_185818.1 CDS mnhG NC_002951.2 951804 952160 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G complement(951804..952160) Staphylococcus aureus subsp. aureus COL 3237710 YP_185819.1 CDS mnhF NC_002951.2 952138 952431 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit F complement(952138..952431) Staphylococcus aureus subsp. aureus COL 3237711 YP_185820.1 CDS mnhE NC_002951.2 952431 952910 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit E complement(952431..952910) Staphylococcus aureus subsp. aureus COL 3237712 YP_185821.1 CDS mnhD NC_002951.2 952912 954408 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(952912..954408) Staphylococcus aureus subsp. aureus COL 3237713 YP_185822.1 CDS mnhC NC_002951.2 954401 954742 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(954401..954742) Staphylococcus aureus subsp. aureus COL 3237714 YP_185823.1 CDS mnhB NC_002951.2 954742 955170 R subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit B complement(954742..955170) Staphylococcus aureus subsp. aureus COL 3237888 YP_185824.1 CDS mnhA NC_002951.2 955163 957568 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A complement(955163..957568) Staphylococcus aureus subsp. aureus COL 3237889 YP_185825.1 CDS kapB NC_002951.2 957699 958082 R identified by similarity to EGAD:10092; hypothetical protein complement(957699..958082) Staphylococcus aureus subsp. aureus COL 3237890 YP_185826.1 CDS SACOL0957 NC_002951.2 958146 958739 D identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 958146..958739 Staphylococcus aureus subsp. aureus COL 3237891 YP_185827.1 CDS SACOL0958 NC_002951.2 959155 959532 D identified by similarity to SP:P80870; match to protein family HMM PF00575; general stress protein 13 959155..959532 Staphylococcus aureus subsp. aureus COL 3237892 YP_185828.1 CDS SACOL0959 NC_002951.2 959894 961021 D identified by match to protein family HMM PF00724; Oye family NADH-dependent flavin oxidoreductase 959894..961021 Staphylococcus aureus subsp. aureus COL 3237696 YP_185829.1 CDS rocD NC_002951.2 961329 962519 D identified by similarity to EGAD:21835; match to protein family HMM PF00202; match to protein family HMM TIGR01885; ornithine--oxo-acid transaminase 961329..962519 Staphylococcus aureus subsp. aureus COL 3237697 YP_185830.1 CDS gluD NC_002951.2 962628 963872 D identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 962628..963872 Staphylococcus aureus subsp. aureus COL 3237698 YP_185831.1 CDS SACOL0962 NC_002951.2 964375 965304 R identified by similarity to EGAD:9350; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(964375..965304) Staphylococcus aureus subsp. aureus COL 3237699 YP_185832.1 CDS argH NC_002951.2 965546 966925 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(965546..966925) Staphylococcus aureus subsp. aureus COL 3237700 YP_185833.1 CDS argG NC_002951.2 966915 968120 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(966915..968120) Staphylococcus aureus subsp. aureus COL 3237701 YP_185834.1 CDS SACOL0965 NC_002951.2 968265 968399 R hypothetical protein complement(968265..968399) Staphylococcus aureus subsp. aureus COL 3237942 YP_185835.1 CDS pgi NC_002951.2 968471 969802 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 968471..969802 Staphylococcus aureus subsp. aureus COL 3237943 YP_185836.1 CDS SACOL0967 NC_002951.2 970127 970702 D identified by similarity to GP:4185300; hypothetical protein 970127..970702 Staphylococcus aureus subsp. aureus COL 3237944 YP_185837.1 CDS spsA NC_002951.2 970707 971231 D identified by similarity to SP:P72364; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase IA, inactive 970707..971231 Staphylococcus aureus subsp. aureus COL 3237945 YP_185838.1 CDS spsB NC_002951.2 971238 971822 D identified by similarity to SP:P72365; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase IB 971238..971822 Staphylococcus aureus subsp. aureus COL 3237946 YP_185839.1 CDS rexB NC_002951.2 971982 975458 D In Gram positive bacteria, the RexAB system appears to fulfill the biological roles of RecBCD found in Gram negative bacteria. In B. subtilis, RexAB is also known as AddABidentified by similarity to EGAD:12281; exonuclease RexB 971982..975458 Staphylococcus aureus subsp. aureus COL 3237683 YP_185840.1 CDS rexA NC_002951.2 975459 979112 D In Gram positive bacteria, the RexAB system appears to fulfill the biological roles of RecBCD found in Gram negative bacteria. In B. subtilis, RexAB is also known as AddABidentified by similarity to EGAD:18428; match to protein family HMM PF00580; exonuclease RexA 975459..979112 Staphylococcus aureus subsp. aureus COL 3237684 YP_185841.1 CDS SACOL0973 NC_002951.2 979278 980180 D identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 979278..980180 Staphylococcus aureus subsp. aureus COL 3237685 YP_185842.1 CDS SACOL0974 NC_002951.2 980509 980898 D identified by similarity to EGAD:108917; match to protein family HMM PF07457; hypothetical protein 980509..980898 Staphylococcus aureus subsp. aureus COL 3237686 YP_185843.1 CDS SACOL0975 NC_002951.2 981069 982385 R NADPH-dependent; catalyzes the reduction of coenzyme A disulfide; coenzyme A disulfide reductase complement(981069..982385) Staphylococcus aureus subsp. aureus COL 3237687 YP_185844.1 CDS SACOL0976 NC_002951.2 982437 983261 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(982437..983261) Staphylococcus aureus subsp. aureus COL 3237675 YP_185845.1 CDS SACOL0977 NC_002951.2 983375 983683 D identified by similarity to EGAD:107291; match to protein family HMM PF01883; hypothetical protein 983375..983683 Staphylococcus aureus subsp. aureus COL 3237676 YP_185846.1 CDS SACOL0978 NC_002951.2 984230 986044 D identified by match to protein family HMM PF01757; hypothetical protein 984230..986044 Staphylococcus aureus subsp. aureus COL 3237677 YP_185847.1 CDS clpB NC_002951.2 986247 988856 D identified by similarity to GP:5231279; match to protein family HMM PF00004; match to protein family HMM PF02861; ATP-dependent Clp protease, ATP-binding subunit ClpB 986247..988856 Staphylococcus aureus subsp. aureus COL 3237678 YP_185848.1 CDS SACOL0980 NC_002951.2 988915 989784 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(988915..989784) Staphylococcus aureus subsp. aureus COL 3237679 YP_185849.1 CDS SACOL0981 NC_002951.2 989894 991039 D identified by similarity to EGAD:19945; match to protein family HMM PF00682; isopropylmalate synthase-like protein 989894..991039 Staphylococcus aureus subsp. aureus COL 3237680 YP_185850.1 CDS SACOL0982 NC_002951.2 991023 991664 D identified by similarity to EGAD:43484; match to protein family HMM PF01300; Sua5/YciO/YrdC/YwlC family protein 991023..991664 Staphylococcus aureus subsp. aureus COL 3237875 YP_185851.1 CDS SACOL0983 NC_002951.2 991657 992775 D hypothetical protein 991657..992775 Staphylococcus aureus subsp. aureus COL 3237876 YP_185852.1 CDS SACOL0984 NC_002951.2 992759 993274 D identified by similarity to EGAD:108624; match to protein family HMM TIGR00481; hypothetical protein 992759..993274 Staphylococcus aureus subsp. aureus COL 3237010 YP_185853.1 CDS SACOL0985 NC_002951.2 993585 994019 D identified by match to protein family HMM PF03642; surface protein 993585..994019 Staphylococcus aureus subsp. aureus COL 3237907 YP_185854.1 CDS SACOL0986 NC_002951.2 994276 994461 R hypothetical protein complement(994276..994461) Staphylococcus aureus subsp. aureus COL 3236154 YP_185855.1 CDS fabH NC_002951.2 994756 995697 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 994756..995697 Staphylococcus aureus subsp. aureus COL 3237317 YP_185856.1 CDS fabF NC_002951.2 995709 996953 D identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 995709..996953 Staphylococcus aureus subsp. aureus COL 3237606 YP_185857.1 CDS SACOL0989 NC_002951.2 997008 997379 R identified by similarity to GB:AAO04276.1; hypothetical protein complement(997008..997379) Staphylococcus aureus subsp. aureus COL 3236270 YP_185858.1 CDS SACOL0990 NC_002951.2 997602 997700 D hypothetical protein 997602..997700 Staphylococcus aureus subsp. aureus COL 3237647 YP_185859.1 CDS oppB NC_002951.2 997700 998548 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 997700..998548 Staphylococcus aureus subsp. aureus COL 3236092 YP_185860.1 CDS oppC NC_002951.2 998548 999618 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 998548..999618 Staphylococcus aureus subsp. aureus COL 3237604 YP_185861.1 CDS oppD NC_002951.2 999635 1000717 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 999635..1000717 Staphylococcus aureus subsp. aureus COL 3236193 YP_185862.1 CDS oppF NC_002951.2 1000707 1001648 D identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein 1000707..1001648 Staphylococcus aureus subsp. aureus COL 3236091 YP_185863.1 CDS SACOL0995 NC_002951.2 1001666 1003321 D identified by match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 1001666..1003321 Staphylococcus aureus subsp. aureus COL 3236268 YP_185864.1 CDS SACOL0996 NC_002951.2 1003533 1005248 D identified by match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 1003533..1005248 Staphylococcus aureus subsp. aureus COL 3237274 YP_185865.1 CDS SACOL0997 NC_002951.2 1005299 1006285 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 1005299..1006285 Staphylococcus aureus subsp. aureus COL 3237292 YP_185866.1 CDS SACOL0998 NC_002951.2 1006288 1007268 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein 1006288..1007268 Staphylococcus aureus subsp. aureus COL 3236152 YP_185867.1 CDS SACOL0999 NC_002951.2 1007261 1008223 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 1007261..1008223 Staphylococcus aureus subsp. aureus COL 3236083 YP_185868.1 CDS SACOL1000 NC_002951.2 1008235 1009116 D identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 1008235..1009116 Staphylococcus aureus subsp. aureus COL 3236087 YP_185869.1 CDS trpS NC_002951.2 1009158 1010147 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1009158..1010147) Staphylococcus aureus subsp. aureus COL 3236281 YP_185870.1 CDS spxA NC_002951.2 1010442 1010837 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 1010442..1010837 Staphylococcus aureus subsp. aureus COL 3236118 YP_185871.1 CDS SACOL1003 NC_002951.2 1011208 1011927 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 1011208..1011927 Staphylococcus aureus subsp. aureus COL 3237150 YP_185872.1 CDS SACOL1004 NC_002951.2 1012048 1013034 D identified by similarity to GP:3211759; match to protein family HMM PF06054; competence protein 1012048..1013034 Staphylococcus aureus subsp. aureus COL 3237328 YP_185873.1 CDS pepF NC_002951.2 1013082 1014890 D identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1013082..1014890 Staphylococcus aureus subsp. aureus COL 3237289 YP_185874.1 CDS SACOL1006 NC_002951.2 1015350 1016156 R identified by similarity to OMNI:NTL01BH2858; hypothetical protein complement(1015350..1016156) Staphylococcus aureus subsp. aureus COL 3236090 YP_185875.1 CDS SACOL1007 NC_002951.2 1016179 1016544 R identified by similarity to EGAD:82734; match to protein family HMM PF01152; hypothetical protein complement(1016179..1016544) Staphylococcus aureus subsp. aureus COL 3237302 YP_185876.1 CDS SACOL1008 NC_002951.2 1016648 1017241 R identified by similarity to EGAD:107332; match to protein family HMM PF01928; hypothetical protein complement(1016648..1017241) Staphylococcus aureus subsp. aureus COL 3237488 YP_185877.1 CDS SACOL1009 NC_002951.2 1017427 1017774 D identified by similarity to OMNI:NTL01BH2853; hypothetical protein 1017427..1017774 Staphylococcus aureus subsp. aureus COL 3237192 YP_185878.1 CDS relA1 NC_002951.2 1017791 1018426 D identified by match to protein family HMM PF04607; GTP pyrophosphokinase 1017791..1018426 Staphylococcus aureus subsp. aureus COL 3236157 YP_185879.1 CDS ppnK NC_002951.2 1018443 1019252 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1018443..1019252 Staphylococcus aureus subsp. aureus COL 3237131 YP_185880.1 CDS SACOL1012 NC_002951.2 1019249 1020103 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1019249..1020103 Staphylococcus aureus subsp. aureus COL 3237557 YP_185881.1 CDS mgtE NC_002951.2 1020124 1021509 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1020124..1021509 Staphylococcus aureus subsp. aureus COL 3237303 YP_185882.1 CDS fabI NC_002951.2 1023641 1024411 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1023641..1024411 Staphylococcus aureus subsp. aureus COL 3237502 YP_185883.1 CDS SACOL1017 NC_002951.2 1024606 1025691 R identified by similarity to GP:10175543; match to protein family HMM PF01594; hypothetical protein complement(1024606..1025691) Staphylococcus aureus subsp. aureus COL 3236110 YP_185884.1 CDS SACOL1018 NC_002951.2 1026033 1027601 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1026033..1027601 Staphylococcus aureus subsp. aureus COL 3236111 YP_185885.1 CDS SACOL1019 NC_002951.2 1027743 1028501 D identified by similarity to OMNI:NTL01BH1443; match to protein family HMM PF00756; hypothetical protein 1027743..1028501 Staphylococcus aureus subsp. aureus COL 3237282 YP_185886.1 CDS SACOL1020 NC_002951.2 1028695 1029204 D similar to 2'-5' RNA ligase; hypothetical protein 1028695..1029204 Staphylococcus aureus subsp. aureus COL 3237751 YP_185887.1 CDS SACOL1021 NC_002951.2 1029317 1030507 R identified by match to protein family HMM PF07690; hypothetical protein complement(1029317..1030507) Staphylococcus aureus subsp. aureus COL 3237297 YP_185888.1 CDS ypfP NC_002951.2 1030485 1031660 R processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase complement(1030485..1031660) Staphylococcus aureus subsp. aureus COL 3237773 YP_185889.1 CDS murE NC_002951.2 1032093 1033574 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine; UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase 1032093..1033574 Staphylococcus aureus subsp. aureus COL 3237160 YP_185890.1 CDS SACOL1024 NC_002951.2 1033567 1033818 D identified by similarity to GB:AAO04316.1; hypothetical protein 1033567..1033818 Staphylococcus aureus subsp. aureus COL 3236161 YP_185891.1 CDS prfC NC_002951.2 1033818 1035380 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1033818..1035380 Staphylococcus aureus subsp. aureus COL 3236280 YP_185892.1 CDS SACOL1026 NC_002951.2 1035682 1036485 D identified by similarity to GP:4160468; match to protein family HMM PF03741; hypothetical protein 1035682..1036485 Staphylococcus aureus subsp. aureus COL 3237989 YP_185893.1 CDS SACOL1027 NC_002951.2 1036544 1036639 D hypothetical protein 1036544..1036639 Staphylococcus aureus subsp. aureus COL 3237291 YP_185894.1 CDS htrA NC_002951.2 1036719 1039028 D identified by match to protein family HMM PF00089; serine protease 1036719..1039028 Staphylococcus aureus subsp. aureus COL 3237294 YP_185895.1 CDS SACOL1030 NC_002951.2 1039045 1040403 D identified by match to protein family HMM PF02386; sodium transport family protein 1039045..1040403 Staphylococcus aureus subsp. aureus COL 3237290 YP_185896.1 CDS SACOL1031 NC_002951.2 1040542 1042053 D identified by match to protein family HMM PF02872; 5' nucleotidase 1040542..1042053 Staphylococcus aureus subsp. aureus COL 3236160 YP_185897.1 CDS SACOL1032 NC_002951.2 1042540 1043070 R identified by match to protein family HMM PF06338; ComK family protein complement(1042540..1043070) Staphylococcus aureus subsp. aureus COL 3236117 YP_185898.1 CDS SACOL1033 NC_002951.2 1043319 1043537 D hypothetical protein 1043319..1043537 Staphylococcus aureus subsp. aureus COL 3237577 YP_185899.1 CDS SACOL1034 NC_002951.2 1043618 1044604 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A family protein complement(1043618..1044604) Staphylococcus aureus subsp. aureus COL 3237277 YP_185900.1 CDS SACOL1035 NC_002951.2 1044803 1044979 D identified by similarity to EGAD:107617; hypothetical protein 1044803..1044979 Staphylococcus aureus subsp. aureus COL 3237333 YP_185901.1 CDS SACOL1036 NC_002951.2 1044994 1045596 D identified by match to protein family HMM PF02517; protease 1044994..1045596 Staphylococcus aureus subsp. aureus COL 3237338 YP_185902.1 CDS SACOL1037 NC_002951.2 1045868 1045975 D hypothetical protein 1045868..1045975 Staphylococcus aureus subsp. aureus COL 3237456 YP_185903.1 CDS SACOL1038 NC_002951.2 1046941 1048905 D identified by match to protein family HMM TIGR01654; membrane protein 1046941..1048905 Staphylococcus aureus subsp. aureus COL 3236108 YP_185904.1 CDS SACOL1039 NC_002951.2 1048908 1049228 D identified by similarity to EGAD:45945; match to protein family HMM TIGR01655; hypothetical protein 1048908..1049228 Staphylococcus aureus subsp. aureus COL 3237167 YP_185905.1 CDS SACOL1040 NC_002951.2 1049225 1049866 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1049225..1049866 Staphylococcus aureus subsp. aureus COL 3237893 YP_185906.1 CDS SACOL1041 NC_002951.2 1049954 1050244 R hypothetical protein complement(1049954..1050244) Staphylococcus aureus subsp. aureus COL 3237153 YP_185907.1 CDS SACOL1042 NC_002951.2 1050523 1050810 D hypothetical protein 1050523..1050810 Staphylococcus aureus subsp. aureus COL 3236078 YP_185908.1 CDS SACOL1043 NC_002951.2 1050816 1052297 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein 1050816..1052297 Staphylococcus aureus subsp. aureus COL 3237331 YP_185909.1 CDS SACOL1044 NC_002951.2 1052386 1052742 R identified by similarity to GP:5822807; match to protein family HMM PF07681; hypothetical protein complement(1052386..1052742) Staphylococcus aureus subsp. aureus COL 3236114 YP_185910.1 CDS SACOL1045 NC_002951.2 1053219 1054178 D identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein 1053219..1054178 Staphylococcus aureus subsp. aureus COL 3236113 YP_185911.1 CDS SACOL1046 NC_002951.2 1054224 1054355 R hypothetical protein complement(1054224..1054355) Staphylococcus aureus subsp. aureus COL 3236132 YP_185912.1 CDS SACOL1047 NC_002951.2 1054419 1054709 R identified by similarity to EGAD:47675; match to protein family HMM PF05154; hypothetical protein complement(1054419..1054709) Staphylococcus aureus subsp. aureus COL 3237055 YP_185913.1 CDS SACOL1048 NC_002951.2 1054853 1055350 D identified by match to protein family HMM PF00583; acetyltransferase 1054853..1055350 Staphylococcus aureus subsp. aureus COL 3237839 YP_185914.1 CDS menA NC_002951.2 1055402 1056340 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1055402..1056340) Staphylococcus aureus subsp. aureus COL 3236493 YP_185915.1 CDS SACOL1050 NC_002951.2 1056491 1056595 D hypothetical protein 1056491..1056595 Staphylococcus aureus subsp. aureus COL 3236131 YP_185916.1 CDS SACOL1051 NC_002951.2 1056672 1057883 D identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase 1056672..1057883 Staphylococcus aureus subsp. aureus COL 3236100 YP_185917.1 CDS menD NC_002951.2 1057870 1059543 D identified by similarity to EGAD:19018; match to protein family HMM PF02776; match to protein family HMM TIGR00173; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1057870..1059543 Staphylococcus aureus subsp. aureus COL 3236546 YP_185918.1 CDS SACOL1053 NC_002951.2 1059530 1060333 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1059530..1060333 Staphylococcus aureus subsp. aureus COL 3236273 YP_185919.1 CDS menB NC_002951.2 1060326 1061147 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1060326..1061147 Staphylococcus aureus subsp. aureus COL 3236163 YP_185920.1 CDS sspC NC_002951.2 1061386 1061715 R identified by similarity to OMNI:SA1055; sspC protein complement(1061386..1061715) Staphylococcus aureus subsp. aureus COL 3236298 YP_185921.1 CDS sspB1 NC_002951.2 1061753 1062934 R identified by similarity to OMNI:SA1056; match to protein family HMM PF05543; cysteine protease precursor SspB complement(1061753..1062934) Staphylococcus aureus subsp. aureus COL 3236119 YP_185922.1 CDS sspA NC_002951.2 1063016 1064026 R identified by similarity to EGAD:7212; match to protein family HMM PF00089; V8 protease complement(1063016..1064026) Staphylococcus aureus subsp. aureus COL 3237584 YP_185923.1 CDS SACOL1058 NC_002951.2 1064554 1065708 R identified by match to protein family HMM PF00155; aminotransferase, class I complement(1064554..1065708) Staphylococcus aureus subsp. aureus COL 3236079 YP_185924.1 CDS SACOL1059 NC_002951.2 1065904 1066914 R identified by similarity to EGAD:107562; match to protein family HMM PF01757; hypothetical protein complement(1065904..1066914) Staphylococcus aureus subsp. aureus COL 3236267 YP_185925.1 CDS SACOL1060 NC_002951.2 1067067 1067486 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1067067..1067486 Staphylococcus aureus subsp. aureus COL 3236272 YP_185926.1 CDS atl NC_002951.2 1067693 1071463 R identified by similarity to EGAD:42602; match to protein family HMM PF01510; match to protein family HMM PF01832; bifunctional autolysin complement(1067693..1071463) Staphylococcus aureus subsp. aureus COL 3236133 YP_185927.1 CDS SACOL1063 NC_002951.2 1071691 1072125 R identified by match to protein family HMM PF00583; acetyltransferase complement(1071691..1072125) Staphylococcus aureus subsp. aureus COL 3237794 YP_185928.1 CDS SACOL1064 NC_002951.2 1072280 1072750 R identified by similarity to GP:2267240; hypothetical protein complement(1072280..1072750) Staphylococcus aureus subsp. aureus COL 3237319 YP_185929.1 CDS SACOL1065 NC_002951.2 1072798 1074015 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; hypothetical protein complement(1072798..1074015) Staphylococcus aureus subsp. aureus COL 3237272 YP_185930.1 CDS SACOL1066 NC_002951.2 1074466 1075659 D identified by match to protein family HMM PF00144; fmt protein 1074466..1075659 Staphylococcus aureus subsp. aureus COL 3238481 YP_185931.1 CDS qoxD NC_002951.2 1076196 1076474 R identified by match to protein family HMM PF03626; quinol oxidase subunit IV complement(1076196..1076474) Staphylococcus aureus subsp. aureus COL 3238089 YP_185932.1 CDS qoxC NC_002951.2 1076483 1077088 R identified by similarity to EGAD:6311; match to protein family HMM PF00510; quinol oxidase subunit III complement(1076483..1077088) Staphylococcus aureus subsp. aureus COL 3238140 YP_185933.1 CDS qoxA NC_002951.2 1077078 1079066 R identified by similarity to EGAD:7190; match to protein family HMM PF00115; quinol oxidase subunit I complement(1077078..1079066) Staphylococcus aureus subsp. aureus COL 3238612 YP_185934.1 CDS qoxB NC_002951.2 1079066 1080166 R identified by similarity to EGAD:20044; match to protein family HMM PF02790; match to protein family HMM PF06481; match to protein family HMM TIGR01432; quinol oxidase subunit II complement(1079066..1080166) Staphylococcus aureus subsp. aureus COL 3238582 YP_185935.1 CDS SACOL1071 NC_002951.2 1080738 1081055 R hypothetical protein complement(1080738..1081055) Staphylococcus aureus subsp. aureus COL 3237877 YP_185936.1 CDS folD NC_002951.2 1081861 1082721 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1081861..1082721) Staphylococcus aureus subsp. aureus COL 3237878 YP_185937.1 CDS purE NC_002951.2 1082922 1083404 D identified by similarity to EGAD:19627; match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 1082922..1083404 Staphylococcus aureus subsp. aureus COL 3237879 YP_185938.1 CDS purK NC_002951.2 1083391 1084515 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1083391..1084515 Staphylococcus aureus subsp. aureus COL 3237669 YP_185939.1 CDS purC NC_002951.2 1084519 1085223 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1084519..1085223 Staphylococcus aureus subsp. aureus COL 3237670 YP_185940.1 CDS purS NC_002951.2 1085223 1085486 D identified by similarity to EGAD:10915; match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 1085223..1085486 Staphylococcus aureus subsp. aureus COL 3237671 YP_185941.1 CDS purQ NC_002951.2 1085488 1086159 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1085488..1086159 Staphylococcus aureus subsp. aureus COL 3237672 YP_185942.1 CDS purL NC_002951.2 1086152 1088341 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1086152..1088341 Staphylococcus aureus subsp. aureus COL 3237673 YP_185943.1 CDS purF NC_002951.2 1088320 1089804 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1088320..1089804 Staphylococcus aureus subsp. aureus COL 3236103 YP_185944.1 CDS purM NC_002951.2 1089797 1090825 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1089797..1090825 Staphylococcus aureus subsp. aureus COL 3236104 YP_185945.1 CDS purN NC_002951.2 1090828 1091394 D identified by similarity to EGAD:16303; match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 1090828..1091394 Staphylococcus aureus subsp. aureus COL 3236105 YP_185946.1 CDS purH NC_002951.2 1091409 1092887 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1091409..1092887 Staphylococcus aureus subsp. aureus COL 3236106 YP_185947.1 CDS purD NC_002951.2 1092909 1094156 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1092909..1094156 Staphylococcus aureus subsp. aureus COL 3236107 YP_185948.1 CDS SACOL1084 NC_002951.2 1094421 1095227 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(1094421..1095227) Staphylococcus aureus subsp. aureus COL 3237934 YP_185949.1 CDS SACOL1085 NC_002951.2 1095220 1096620 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1095220..1096620) Staphylococcus aureus subsp. aureus COL 3237935 YP_185950.1 CDS SACOL1086 NC_002951.2 1096635 1097210 R identified by similarity to EGAD:107484; hypothetical protein complement(1096635..1097210) Staphylococcus aureus subsp. aureus COL 3237936 YP_185951.1 CDS SACOL1087 NC_002951.2 1097857 1097991 R hypothetical protein complement(1097857..1097991) Staphylococcus aureus subsp. aureus COL 3237937 YP_185952.1 CDS SACOL1088 NC_002951.2 1098143 1099438 D identified by similarity to GB:AAO04375.1; hypothetical protein 1098143..1099438 Staphylococcus aureus subsp. aureus COL 3237938 YP_185953.1 CDS SACOL1089 NC_002951.2 1099863 1101035 D identified by similarity to EGAD:16798; hypothetical protein 1099863..1101035 Staphylococcus aureus subsp. aureus COL 3237814 YP_185954.1 CDS SACOL1090 NC_002951.2 1101089 1101631 D identified by similarity to GB:AAO04377.1; hypothetical protein 1101089..1101631 Staphylococcus aureus subsp. aureus COL 3237815 YP_185955.1 CDS ptsH NC_002951.2 1101785 1102051 D identified by similarity to OMNI:SA1091; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 1101785..1102051 Staphylococcus aureus subsp. aureus COL 3237816 YP_185956.1 CDS ptsI NC_002951.2 1102054 1103772 D identified by similarity to EGAD:13195; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 1102054..1103772 Staphylococcus aureus subsp. aureus COL 3237817 YP_185957.1 CDS SACOL1093 NC_002951.2 1104009 1104242 R identified by similarity to GB:AAO04380.1; hypothetical protein complement(1104009..1104242) Staphylococcus aureus subsp. aureus COL 3237818 YP_185958.1 CDS cydA NC_002951.2 1104440 1105801 D identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 1104440..1105801 Staphylococcus aureus subsp. aureus COL 3237819 YP_185959.1 CDS cydB NC_002951.2 1105798 1106817 D identified by similarity to GP:4514629; cytochrome d ubiquinol oxidase subunit II 1105798..1106817 Staphylococcus aureus subsp. aureus COL 3237629 YP_185960.1 CDS SACOL1096 NC_002951.2 1106950 1107612 D identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA potassium uptake family protein 1106950..1107612 Staphylococcus aureus subsp. aureus COL 3237630 YP_185961.1 CDS SACOL1097 NC_002951.2 1107648 1107827 R hypothetical protein complement(1107648..1107827) Staphylococcus aureus subsp. aureus COL 3237631 YP_185962.1 CDS SACOL1098 NC_002951.2 1107961 1109658 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; hypothetical protein complement(1107961..1109658) Staphylococcus aureus subsp. aureus COL 3237632 YP_185963.1 CDS SACOL1099 NC_002951.2 1109658 1109876 R identified by similarity to OMNI:NTL01BH2664; match to protein family HMM PF07288; hypothetical protein complement(1109658..1109876) Staphylococcus aureus subsp. aureus COL 3237633 YP_185964.1 CDS def NC_002951.2 1110357 1110908 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1110357..1110908) Staphylococcus aureus subsp. aureus COL 3237843 YP_185965.1 CDS SACOL1101 NC_002951.2 1111273 1111899 D identified by similarity to SP:P21884; hypothetical protein 1111273..1111899 Staphylococcus aureus subsp. aureus COL 3237844 YP_185966.1 CDS pdhA NC_002951.2 1112070 1113182 D identified by similarity to SP:P21881; match to protein family HMM PF00676; pyruvate dehydrogenase complex E1 component subunit alpha 1112070..1113182 Staphylococcus aureus subsp. aureus COL 3237845 YP_185967.1 CDS pdhB NC_002951.2 1113186 1114163 D identified by similarity to EGAD:13437; similarity to GP:7107452; match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase complex E1 component subunit beta 1113186..1114163 Staphylococcus aureus subsp. aureus COL 3237846 YP_185968.1 CDS pdhC NC_002951.2 1114254 1115546 D identified by similarity to EGAD:102440; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase E2 1114254..1115546 Staphylococcus aureus subsp. aureus COL 3237847 YP_185969.1 CDS pdhD NC_002951.2 1115550 1116956 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1115550..1116956 Staphylococcus aureus subsp. aureus COL 3237345 YP_185970.1 CDS SACOL1106 NC_002951.2 1117124 1117399 D identified by similarity to OMNI:NTL01LL0557; match to protein family HMM PF05256; hypothetical protein 1117124..1117399 Staphylococcus aureus subsp. aureus COL 3237346 YP_185971.1 CDS SACOL1107 NC_002951.2 1117543 1118082 D identified by match to protein family HMM PF01381; Cro/CI family transcriptional regulator 1117543..1118082 Staphylococcus aureus subsp. aureus COL 3237347 YP_185972.1 CDS SACOL1108 NC_002951.2 1118095 1119189 D identified by match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein 1118095..1119189 Staphylococcus aureus subsp. aureus COL 3237348 YP_185973.1 CDS SACOL1109 NC_002951.2 1119182 1119979 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1119182..1119979 Staphylococcus aureus subsp. aureus COL 3237349 YP_185974.1 CDS SACOL1110 NC_002951.2 1119985 1120794 D identified by similarity to EGAD:15490; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1119985..1120794 Staphylococcus aureus subsp. aureus COL 3237350 YP_185975.1 CDS SACOL1111 NC_002951.2 1120794 1121867 D identified by similarity to EGAD:16715; match to protein family HMM PF01547; spermidine/putrescine ABC transporter substrate-binding protein 1120794..1121867 Staphylococcus aureus subsp. aureus COL 3237715 YP_185976.1 CDS SACOL1112 NC_002951.2 1121941 1122960 D identified by similarity to GB:AAO04398.1; hypothetical protein 1121941..1122960 Staphylococcus aureus subsp. aureus COL 3237716 YP_185977.1 CDS SACOL1113 NC_002951.2 1123243 1123662 D hypothetical protein 1123243..1123662 Staphylococcus aureus subsp. aureus COL 3237717 YP_185978.1 CDS SACOL1114 NC_002951.2 1123744 1125096 R identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH complement(1123744..1125096) Staphylococcus aureus subsp. aureus COL 3237718 YP_185979.1 CDS SACOL1115 NC_002951.2 1125280 1125894 R identified by similarity to EGAD:107910; match to protein family HMM PF06335; hypothetical protein complement(1125280..1125894) Staphylococcus aureus subsp. aureus COL 3237719 YP_185980.1 CDS SACOL1116 NC_002951.2 1126051 1126878 D identified by match to protein family HMM PF00459; inositol monophosphatase 1126051..1126878 Staphylococcus aureus subsp. aureus COL 3237981 YP_185981.1 CDS SACOL1117 NC_002951.2 1127032 1127223 R identified by similarity to GB:AAO04403.1; hypothetical protein complement(1127032..1127223) Staphylococcus aureus subsp. aureus COL 3237982 YP_185982.1 CDS typA NC_002951.2 1127325 1129172 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 1127325..1129172 Staphylococcus aureus subsp. aureus COL 3237983 YP_185983.1 CDS SACOL1119 NC_002951.2 1129312 1129479 R identified by similarity to EGAD:107937; hypothetical protein complement(1129312..1129479) Staphylococcus aureus subsp. aureus COL 3237984 YP_185984.1 CDS SACOL1120 NC_002951.2 1129481 1129963 R identified by similarity to OMNI:NT01BS1746; hypothetical protein complement(1129481..1129963) Staphylococcus aureus subsp. aureus COL 3237985 YP_185985.1 CDS SACOL1121 NC_002951.2 1130104 1130379 D depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein; hypothetical protein 1130104..1130379 Staphylococcus aureus subsp. aureus COL 3237986 YP_185986.1 CDS SACOL1122 NC_002951.2 1130693 1131919 D identified by similarity to EGAD:20048; match to protein family HMM PF01098; cell cycle protein FtsW 1130693..1131919 Staphylococcus aureus subsp. aureus COL 3237821 YP_185987.1 CDS pyc NC_002951.2 1132473 1135925 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1132473..1135925 Staphylococcus aureus subsp. aureus COL 3237822 YP_185988.1 CDS ctaA NC_002951.2 1136065 1137135 R identified by similarity to EGAD:18452; match to protein family HMM PF02628; cytochrome oxidase assembly protein complement(1136065..1137135) Staphylococcus aureus subsp. aureus COL 3237823 YP_185989.1 CDS ctaB NC_002951.2 1137416 1138327 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1137416..1138327 Staphylococcus aureus subsp. aureus COL 3237824 YP_185990.1 CDS SACOL1126 NC_002951.2 1138352 1138813 D identified by similarity to EGAD:156110; match to protein family HMM PF04238; hypothetical protein 1138352..1138813 Staphylococcus aureus subsp. aureus COL 3237825 YP_185991.1 CDS SACOL1127 NC_002951.2 1139025 1139228 D hypothetical protein 1139025..1139228 Staphylococcus aureus subsp. aureus COL 3237309 YP_185992.1 CDS SACOL1128 NC_002951.2 1139278 1140177 D identified by similarity to OMNI:NT01BS1763; hypothetical protein 1139278..1140177 Staphylococcus aureus subsp. aureus COL 3237310 YP_185993.1 CDS SACOL1129 NC_002951.2 1140193 1140627 D identified by similarity to OMNI:NT01BS1766; match to protein family HMM PF07050; hypothetical protein 1140193..1140627 Staphylococcus aureus subsp. aureus COL 3237311 YP_185994.1 CDS SACOL1130 NC_002951.2 1140690 1141616 R identified by similarity to EGAD:9350; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(1140690..1141616) Staphylococcus aureus subsp. aureus COL 3237312 YP_185995.1 CDS SACOL1131 NC_002951.2 1141855 1142109 D identified by similarity to OMNI:EF2453; hypothetical protein 1141855..1142109 Staphylococcus aureus subsp. aureus COL 3237313 YP_185996.1 CDS SACOL1132 NC_002951.2 1142112 1142501 R identified by similarity to OMNI:NTL01BH2594; hypothetical protein complement(1142112..1142501) Staphylococcus aureus subsp. aureus COL 3237314 YP_185997.1 CDS SACOL1133 NC_002951.2 1142571 1143113 D identified by similarity to EGAD:108192; match to protein family HMM PF03602; match to protein family HMM TIGR00095; hypothetical protein 1142571..1143113 Staphylococcus aureus subsp. aureus COL 3237639 YP_185998.1 CDS coaD NC_002951.2 1143115 1143597 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1143115..1143597 Staphylococcus aureus subsp. aureus COL 3237640 YP_185999.1 CDS SACOL1135 NC_002951.2 1143659 1144798 R identified by similarity to OMNI:NTL01BH2588; match to protein family HMM PF05636; hypothetical protein complement(1143659..1144798) Staphylococcus aureus subsp. aureus COL 3237641 YP_186000.1 CDS SACOL1136 NC_002951.2 1144925 1145482 D identified by similarity to GP:10175205; match to protein family HMM PF02620; hypothetical protein 1144925..1145482 Staphylococcus aureus subsp. aureus COL 3237642 YP_186001.1 CDS rpmF NC_002951.2 1145562 1145735 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1145562..1145735 Staphylococcus aureus subsp. aureus COL 3237643 YP_186002.1 CDS isdB NC_002951.2 1145889 1147826 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; LPXTG cell wall surface anchor protein complement(1145889..1147826) Staphylococcus aureus subsp. aureus COL 3236095 YP_186003.1 CDS isdA NC_002951.2 1148029 1149081 R identified by match to protein family HMM PF00746; match to protein family HMM PF05031; match to protein family HMM TIGR01167; LPXTG cell wall surface anchor protein complement(1148029..1149081) Staphylococcus aureus subsp. aureus COL 3236096 YP_186004.1 CDS isdC NC_002951.2 1149290 1149973 D identified by similarity to GP:10175922; match to protein family HMM PF05031; NPQTN cell wall surface anchor protein 1149290..1149973 Staphylococcus aureus subsp. aureus COL 3236097 YP_186005.1 CDS isdD NC_002951.2 1149973 1151049 D hypothetical protein 1149973..1151049 Staphylococcus aureus subsp. aureus COL 3236098 YP_186006.1 CDS SACOL1143 NC_002951.2 1151046 1151924 D identified by similarity to EGAD:16402; match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein 1151046..1151924 Staphylococcus aureus subsp. aureus COL 3236099 YP_186007.1 CDS SACOL1144 NC_002951.2 1151937 1152902 D identified by similarity to EGAD:7245; match to protein family HMM PF01032; iron compound ABC transporter permease 1151937..1152902 Staphylococcus aureus subsp. aureus COL 3237660 YP_186008.1 CDS srtB NC_002951.2 1152964 1153698 D identified by similarity to OMNI:NTL01BH3297; match to protein family HMM PF07170; sortase 1152964..1153698 Staphylococcus aureus subsp. aureus COL 3237661 YP_186009.1 CDS SACOL1146 NC_002951.2 1153717 1154040 D iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source; heme-degrading monooxygenase IsdG 1153717..1154040 Staphylococcus aureus subsp. aureus COL 3237662 YP_186010.1 CDS SACOL1147 NC_002951.2 1154424 1155164 D identified by match to protein family HMM PF00588; RNA methyltransferase 1154424..1155164 Staphylococcus aureus subsp. aureus COL 3237663 YP_186011.1 CDS pheS NC_002951.2 1155545 1156603 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1155545..1156603 Staphylococcus aureus subsp. aureus COL 3237664 YP_186012.1 CDS pheT NC_002951.2 1156603 1159005 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1156603..1159005 Staphylococcus aureus subsp. aureus COL 3237665 YP_186013.1 CDS rnhC NC_002951.2 1159176 1160114 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(1159176..1160114) Staphylococcus aureus subsp. aureus COL 3237649 YP_186014.1 CDS SACOL1151 NC_002951.2 1160484 1160750 D identified by similarity to EGAD:107725; match to protein family HMM PF05164; hypothetical protein 1160484..1160750 Staphylococcus aureus subsp. aureus COL 3237650 YP_186015.1 CDS SACOL1152 NC_002951.2 1160751 1161272 D identified by match to protein family HMM PF02674; hypothetical protein 1160751..1161272 Staphylococcus aureus subsp. aureus COL 3237651 YP_186016.1 CDS SACOL1153 NC_002951.2 1161345 1163057 D identified by match to protein family HMM PF02231; match to protein family HMM PF02811; hypothetical protein 1161345..1163057 Staphylococcus aureus subsp. aureus COL 3237652 YP_186017.1 CDS SACOL1154 NC_002951.2 1163067 1165415 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 1163067..1165415 Staphylococcus aureus subsp. aureus COL 3237653 YP_186018.1 CDS trxA NC_002951.2 1165588 1165902 D identified by similarity to SP:P14949; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1165588..1165902 Staphylococcus aureus subsp. aureus COL 3237320 YP_186019.1 CDS SACOL1156 NC_002951.2 1165965 1166060 R hypothetical protein complement(1165965..1166060) Staphylococcus aureus subsp. aureus COL 3238637 YP_186020.1 CDS uvrC NC_002951.2 1166226 1168007 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1166226..1168007 Staphylococcus aureus subsp. aureus COL 3238194 YP_186021.1 CDS sdhC NC_002951.2 1168331 1168945 D identified by similarity to EGAD:20778; match to protein family HMM TIGR02046; succinate dehydrogenase, cytochrome b558 subunit 1168331..1168945 Staphylococcus aureus subsp. aureus COL 3238335 YP_186022.1 CDS sdhA NC_002951.2 1168997 1170763 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1168997..1170763 Staphylococcus aureus subsp. aureus COL 3238477 YP_186023.1 CDS sdhB NC_002951.2 1170763 1171578 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1170763..1171578 Staphylococcus aureus subsp. aureus COL 3238001 YP_186024.1 CDS murI NC_002951.2 1171814 1172614 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1171814..1172614 Staphylococcus aureus subsp. aureus COL 3238222 YP_186025.1 CDS SACOL1162 NC_002951.2 1172626 1173213 D hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 1172626..1173213 Staphylococcus aureus subsp. aureus COL 3238373 YP_186026.1 CDS SACOL1163 NC_002951.2 1173206 1173709 D identified by similarity to OMNI:NTL01BH3069; match to protein family HMM TIGR00040; hypothetical protein 1173206..1173709 Staphylococcus aureus subsp. aureus COL 3238469 YP_186027.1 CDS SACOL1164 NC_002951.2 1174198 1174527 D identified by similarity to EGAD:16905; fibrinogen binding-like protein 1174198..1174527 Staphylococcus aureus subsp. aureus COL 3238323 YP_186028.1 CDS SACOL1165 NC_002951.2 1174698 1174805 D hypothetical protein 1174698..1174805 Staphylococcus aureus subsp. aureus COL 3238216 YP_186029.1 CDS SACOL1166 NC_002951.2 1174896 1175297 R FLIPr; secreted protein that blocks the formyl peptide receptor-like 1 (FPRL1) found in neutrophils, monocytes, B cells, and NK cells; inhibits the binding of chemoattractants (such as formylated peptides) to FPRL1, which initiates the phagocyte mobilization towards the infection site; formyl peptide receptor-like 1 inhibitory protein complement(1174896..1175297) Staphylococcus aureus subsp. aureus COL 3238392 YP_186030.1 CDS SACOL1167 NC_002951.2 1175969 1176475 D hypothetical protein 1175969..1176475 Staphylococcus aureus subsp. aureus COL 3238163 YP_186031.1 CDS efb NC_002951.2 1176734 1177231 D identified by similarity to EGAD:16905; fibrinogen-binding protein 1176734..1177231 Staphylococcus aureus subsp. aureus COL 3238454 YP_186032.1 CDS SACOL1169 NC_002951.2 1177385 1177735 D fibrinogen-binding protein precursor-like protein 1177385..1177735 Staphylococcus aureus subsp. aureus COL 3238697 YP_186033.1 CDS SACOL1170 NC_002951.2 1178161 1178406 D hypothetical protein 1178161..1178406 Staphylococcus aureus subsp. aureus COL 3238603 YP_186034.1 CDS SACOL1171 NC_002951.2 1178557 1178742 R hypothetical protein complement(1178557..1178742) Staphylococcus aureus subsp. aureus COL 3238139 YP_186035.1 CDS SACOL1172 NC_002951.2 1179364 1179597 R hypothetical protein complement(1179364..1179597) Staphylococcus aureus subsp. aureus COL 3238597 YP_186036.1 CDS hlY NC_002951.2 1180074 1181033 R identified by similarity to SP:P09616; match to protein family HMM PF01117; match to protein family HMM TIGR01002; alpha-hemolysin precursor complement(1180074..1181033) Staphylococcus aureus subsp. aureus COL 3237999 YP_186037.1 CDS SACOL1174 NC_002951.2 1181706 1181852 D hypothetical protein 1181706..1181852 Staphylococcus aureus subsp. aureus COL 3238304 YP_186038.1 CDS SACOL1175 NC_002951.2 1181836 1182033 D hypothetical protein 1181836..1182033 Staphylococcus aureus subsp. aureus COL 3238126 YP_186039.1 CDS SACOL1176 NC_002951.2 1182065 1182313 R hypothetical protein complement(1182065..1182313) Staphylococcus aureus subsp. aureus COL 3238079 YP_186040.1 CDS SACOL1177 NC_002951.2 1182290 1182421 D hypothetical protein 1182290..1182421 Staphylococcus aureus subsp. aureus COL 3238517 YP_186041.1 CDS SACOL1178 NC_002951.2 1182590 1183306 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(1182590..1183306) Staphylococcus aureus subsp. aureus COL 3238464 YP_186042.1 CDS SACOL1179 NC_002951.2 1183414 1184139 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(1183414..1184139) Staphylococcus aureus subsp. aureus COL 3238522 YP_186043.1 CDS SACOL1180 NC_002951.2 1184234 1184959 R these proteins share structural homology to known superantigen proteins but do not exhibit any of the properties expected such as histocompatibility complex class II binding or broad T-cell activation; superantigen-like protein complement(1184234..1184959) Staphylococcus aureus subsp. aureus COL 3238179 YP_186044.1 CDS arcB1 NC_002951.2 1185397 1186398 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1185397..1186398 Staphylococcus aureus subsp. aureus COL 3238259 YP_186045.1 CDS arcC1 NC_002951.2 1186421 1187353 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1186421..1187353 Staphylococcus aureus subsp. aureus COL 3238413 YP_186046.1 CDS SACOL1183 NC_002951.2 1187525 1189081 D identified by match to protein family HMM PF03606; hypothetical protein 1187525..1189081 Staphylococcus aureus subsp. aureus COL 3238125 YP_186047.1 CDS SACOL1184 NC_002951.2 1189921 1190868 R exfoliative toxin complement(1189921..1190868) Staphylococcus aureus subsp. aureus COL 3238559 YP_186048.1 CDS SACOL1185 NC_002951.2 1191117 1191305 D hypothetical protein 1191117..1191305 Staphylococcus aureus subsp. aureus COL 3238145 YP_186049.1 CDS SACOL1186 NC_002951.2 1192217 1192351 D identified by similarity to EGAD:9804; match to protein family HMM PF05480; anti protein (phenol soluble modulin) 1192217..1192351 Staphylococcus aureus subsp. aureus COL 3236432 YP_186050.1 CDS SACOL1187 NC_002951.2 1192408 1192542 D identified by similarity to EGAD:6344; match to protein family HMM PF05480; anti protein (phenol soluble modulin) 1192408..1192542 Staphylococcus aureus subsp. aureus COL 3236423 YP_186051.1 CDS SACOL1188 NC_002951.2 1192666 1193361 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD superfamily hydrolase 1192666..1193361 Staphylococcus aureus subsp. aureus COL 3238615 YP_186052.1 CDS SACOL1189 NC_002951.2 1193470 1193910 R identified by match to protein family HMM PF00583; hypothetical protein complement(1193470..1193910) Staphylococcus aureus subsp. aureus COL 3238607 YP_186053.1 CDS SACOL1190 NC_002951.2 1194105 1195718 D identified by similarity to EGAD:37696; hypothetical protein 1194105..1195718 Staphylococcus aureus subsp. aureus COL 3236047 YP_186054.1 CDS mraZ NC_002951.2 1195862 1196293 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1195862..1196293 Staphylococcus aureus subsp. aureus COL 3238641 YP_186055.1 CDS mraW NC_002951.2 1196309 1197244 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1196309..1197244 Staphylococcus aureus subsp. aureus COL 3237962 YP_186056.1 CDS SACOL1193 NC_002951.2 1197273 1197659 D identified by similarity to EGAD:21242; match to protein family HMM TIGR02209; cell division protein 1197273..1197659 Staphylococcus aureus subsp. aureus COL 3236134 YP_186057.1 CDS pbp1 NC_002951.2 1197640 1199874 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; penicillin-binding protein 1 1197640..1199874 Staphylococcus aureus subsp. aureus COL 3236102 YP_186058.1 CDS mraY NC_002951.2 1200166 1201131 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1200166..1201131 Staphylococcus aureus subsp. aureus COL 3236112 YP_186059.1 CDS murD NC_002951.2 1201133 1202482 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1201133..1202482 Staphylococcus aureus subsp. aureus COL 3238515 YP_186060.1 CDS divIB NC_002951.2 1202498 1203817 D identified by similarity to EGAD:18732; match to protein family HMM PF03799; cell division protein 1202498..1203817 Staphylococcus aureus subsp. aureus COL 3238331 YP_186061.1 CDS ftsA NC_002951.2 1203923 1205335 D identified by similarity to EGAD:18700; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 1203923..1205335 Staphylococcus aureus subsp. aureus COL 3237321 YP_186062.1 CDS ftsZ NC_002951.2 1205368 1206540 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1205368..1206540 Staphylococcus aureus subsp. aureus COL 3237322 YP_186063.1 CDS SACOL1200 NC_002951.2 1206800 1207591 D identified by similarity to EGAD:108215; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1206800..1207591 Staphylococcus aureus subsp. aureus COL 3237323 YP_186064.1 CDS SACOL1201 NC_002951.2 1207609 1208283 D identified by similarity to EGAD:108216; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1207609..1208283 Staphylococcus aureus subsp. aureus COL 3237324 YP_186065.1 CDS ylmF NC_002951.2 1208280 1208843 D identified by match to protein family HMM PF04472; hypothetical protein 1208280..1208843 Staphylococcus aureus subsp. aureus COL 3237863 YP_186066.1 CDS ylmG NC_002951.2 1208855 1209145 D identified by match to protein family HMM PF02325; hypothetical protein 1208855..1209145 Staphylococcus aureus subsp. aureus COL 3237864 YP_186067.1 CDS ylmH NC_002951.2 1209255 1210034 D identified by similarity to GP:4009474; match to protein family HMM PF01479; YlmH protein 1209255..1210034 Staphylococcus aureus subsp. aureus COL 3237865 YP_186068.1 CDS SACOL1205 NC_002951.2 1210058 1210675 D identified by match to protein family HMM PF05103; hypothetical protein 1210058..1210675 Staphylococcus aureus subsp. aureus COL 3237866 YP_186069.1 CDS ileS NC_002951.2 1210896 1213649 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1210896..1213649 Staphylococcus aureus subsp. aureus COL 3237867 YP_186070.1 CDS SACOL1207 NC_002951.2 1213939 1214736 D identified by match to protein family HMM PF00903; glyoxalase 1213939..1214736 Staphylococcus aureus subsp. aureus COL 3237154 YP_186071.1 CDS lspA NC_002951.2 1215560 1216051 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1215560..1216051 Staphylococcus aureus subsp. aureus COL 3237155 YP_186072.1 CDS SACOL1209 NC_002951.2 1216051 1216968 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 1216051..1216968 Staphylococcus aureus subsp. aureus COL 3237156 YP_186073.1 CDS pyrR NC_002951.2 1217368 1217895 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1217368..1217895 Staphylococcus aureus subsp. aureus COL 3237157 YP_186074.1 CDS uraA NC_002951.2 1218113 1219420 D identified by similarity to EGAD:20988; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1218113..1219420 Staphylococcus aureus subsp. aureus COL 3237158 YP_186075.1 CDS pyrB NC_002951.2 1219448 1220329 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1219448..1220329 Staphylococcus aureus subsp. aureus COL 3237655 YP_186076.1 CDS pyrC NC_002951.2 1220347 1221621 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1220347..1221621 Staphylococcus aureus subsp. aureus COL 3237656 YP_186077.1 CDS carA NC_002951.2 1221623 1222723 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1221623..1222723 Staphylococcus aureus subsp. aureus COL 3237657 YP_186078.1 CDS carB NC_002951.2 1222716 1225889 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1222716..1225889 Staphylococcus aureus subsp. aureus COL 3237658 YP_186079.1 CDS pyrF NC_002951.2 1225999 1226691 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1225999..1226691 Staphylococcus aureus subsp. aureus COL 3237659 YP_186080.1 CDS pyrE NC_002951.2 1226691 1227302 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1226691..1227302 Staphylococcus aureus subsp. aureus COL 3236135 YP_186081.1 CDS SACOL1218 NC_002951.2 1227332 1227544 D identified by similarity to GB:AAO04479.1; hypothetical protein 1227332..1227544 Staphylococcus aureus subsp. aureus COL 3236136 YP_186082.1 CDS SACOL1219 NC_002951.2 1227981 1228382 D identified by similarity to OMNI:NTL03PA01359; hypothetical protein 1227981..1228382 Staphylococcus aureus subsp. aureus COL 3236137 YP_186083.1 CDS SACOL1220 NC_002951.2 1228645 1230342 R identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin/fibrinogen binding-like protein complement(1228645..1230342) Staphylococcus aureus subsp. aureus COL 3236138 YP_186084.1 CDS gmk NC_002951.2 1230617 1231240 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1230617..1231240 Staphylococcus aureus subsp. aureus COL 3236139 YP_186085.1 CDS rpoZ NC_002951.2 1231240 1231458 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1231240..1231458 Staphylococcus aureus subsp. aureus COL 3236140 YP_186086.1 CDS coaBC NC_002951.2 1231668 1232873 D identified by similarity to SP:P24285; match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1231668..1232873 Staphylococcus aureus subsp. aureus COL 3237848 YP_186087.1 CDS priA NC_002951.2 1232873 1235281 D identified by similarity to EGAD:98914; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N` 1232873..1235281 Staphylococcus aureus subsp. aureus COL 3237849 YP_186088.1 CDS SACOL1225 NC_002951.2 1235787 1236740 D hypothetical protein 1235787..1236740 Staphylococcus aureus subsp. aureus COL 3237850 YP_186089.1 CDS SACOL1226 NC_002951.2 1236903 1237181 R identified by similarity to EGAD:47675; match to protein family HMM PF05154; hypothetical protein complement(1236903..1237181) Staphylococcus aureus subsp. aureus COL 3237851 YP_186090.1 CDS def2 NC_002951.2 1237405 1237893 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1237405..1237893 Staphylococcus aureus subsp. aureus COL 3237852 YP_186091.1 CDS fmt NC_002951.2 1237886 1238821 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 1237886..1238821 Staphylococcus aureus subsp. aureus COL 3237966 YP_186092.1 CDS sun NC_002951.2 1238818 1240125 D identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 1238818..1240125 Staphylococcus aureus subsp. aureus COL 3237967 YP_186093.1 CDS SACOL1230 NC_002951.2 1240128 1241222 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1240128..1241222 Staphylococcus aureus subsp. aureus COL 3237968 YP_186094.1 CDS SACOL1231 NC_002951.2 1241229 1241972 D identified by match to protein family HMM PF00481; protein phosphatase 2C domain-containing protein 1241229..1241972 Staphylococcus aureus subsp. aureus COL 3237969 YP_186095.1 CDS SACOL1234 NC_002951.2 1244191 1245066 D identified by similarity to EGAD:108267; match to protein family HMM PF03193; match to protein family HMM TIGR00157; hypothetical protein 1244191..1245066 Staphylococcus aureus subsp. aureus COL 3237951 YP_186096.1 CDS rpe NC_002951.2 1245067 1245711 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 1245067..1245711 Staphylococcus aureus subsp. aureus COL 3237952 YP_186097.1 CDS SACOL1236 NC_002951.2 1245718 1246359 D identified by similarity to EGAD:108271; match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378; hypothetical protein 1245718..1246359 Staphylococcus aureus subsp. aureus COL 3237953 YP_186098.1 CDS rpmB NC_002951.2 1246740 1246928 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1246740..1246928) Staphylococcus aureus subsp. aureus COL 3237954 YP_186099.1 CDS SACOL1239 NC_002951.2 1247371 1247745 D identified by similarity to EGAD:108275; match to protein family HMM PF03780; hypothetical protein 1247371..1247745 Staphylococcus aureus subsp. aureus COL 3237955 YP_186100.1 CDS SACOL1240 NC_002951.2 1247760 1249406 D identified by match to protein family HMM PF02734; DAK2 domain-containing protein 1247760..1249406 Staphylococcus aureus subsp. aureus COL 3238621 YP_186101.1 CDS recG NC_002951.2 1249596 1251656 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1249596..1251656 Staphylococcus aureus subsp. aureus COL 3238622 YP_186102.1 CDS SACOL1242 NC_002951.2 1251859 1252431 D negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1251859..1252431 Staphylococcus aureus subsp. aureus COL 3238623 YP_186103.1 CDS plsX NC_002951.2 1252436 1253422 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1252436..1253422 Staphylococcus aureus subsp. aureus COL 3238624 YP_186104.1 CDS fabD NC_002951.2 1253415 1254341 D identified by similarity to EGAD:97846; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 1253415..1254341 Staphylococcus aureus subsp. aureus COL 3238625 YP_186105.1 CDS fabG1 NC_002951.2 1254334 1255068 D identified by similarity to EGAD:108288; match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 1254334..1255068 Staphylococcus aureus subsp. aureus COL 3238574 YP_186106.1 CDS SACOL1246 NC_002951.2 1255191 1255289 R hypothetical protein complement(1255191..1255289) Staphylococcus aureus subsp. aureus COL 3238575 YP_186107.1 CDS acpP NC_002951.2 1255311 1255544 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1255311..1255544 Staphylococcus aureus subsp. aureus COL 3238576 YP_186108.1 CDS rnc NC_002951.2 1255660 1256391 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1255660..1256391 Staphylococcus aureus subsp. aureus COL 3238577 YP_186109.1 CDS SACOL1250 NC_002951.2 1256538 1260104 D identified by similarity to EGAD:37839; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1256538..1260104 Staphylococcus aureus subsp. aureus COL 3238578 YP_186110.1 CDS SACOL1251 NC_002951.2 1260104 1261354 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; cell division protein FtsY 1260104..1261354 Staphylococcus aureus subsp. aureus COL 3238080 YP_186111.1 CDS SACOL1252 NC_002951.2 1261341 1261673 D identified by similarity to OMNI:NTL01BH2488; match to protein family HMM PF04297; DNA-binding protein 1261341..1261673 Staphylococcus aureus subsp. aureus COL 3238081 YP_186112.1 CDS ffh NC_002951.2 1261699 1263066 D identified by similarity to EGAD:5600; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1261699..1263066 Staphylococcus aureus subsp. aureus COL 3238082 YP_186113.1 CDS rpsP NC_002951.2 1263501 1263776 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1263501..1263776 Staphylococcus aureus subsp. aureus COL 3238083 YP_186114.1 CDS rimM NC_002951.2 1263964 1264467 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1263964..1264467 Staphylococcus aureus subsp. aureus COL 3238084 YP_186115.1 CDS trmD NC_002951.2 1264467 1265204 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1264467..1265204 Staphylococcus aureus subsp. aureus COL 3238165 YP_186116.1 CDS rplS NC_002951.2 1265307 1265657 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1265307..1265657 Staphylococcus aureus subsp. aureus COL 3238166 YP_186117.1 CDS SACOL1259 NC_002951.2 1265901 1268507 R identified by similarity to EGAD:108285; hypothetical protein complement(1265901..1268507) Staphylococcus aureus subsp. aureus COL 3238167 YP_186118.1 CDS rbgA NC_002951.2 1268908 1269792 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1268908..1269792 Staphylococcus aureus subsp. aureus COL 3238168 YP_186119.1 CDS rnhB NC_002951.2 1269776 1270543 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1269776..1270543 Staphylococcus aureus subsp. aureus COL 3238169 YP_186120.1 CDS sucC NC_002951.2 1270652 1271818 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1270652..1271818 Staphylococcus aureus subsp. aureus COL 3238170 YP_186121.1 CDS sucD NC_002951.2 1271840 1272748 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1271840..1272748 Staphylococcus aureus subsp. aureus COL 3238355 YP_186122.1 CDS lytN NC_002951.2 1272942 1274093 D identified by similarity to GP:3767593; match to protein family HMM PF01476; match to protein family HMM PF04650; match to protein family HMM PF05257; match to protein family HMM TIGR01168; cell wall hydrolase 1272942..1274093 Staphylococcus aureus subsp. aureus COL 3238356 YP_186123.1 CDS eprH NC_002951.2 1274121 1275365 D identified by match to protein family HMM PF02388; endopeptidase resistance gene 1274121..1275365 Staphylococcus aureus subsp. aureus COL 3238357 YP_186124.1 CDS SACOL1266 NC_002951.2 1275538 1276410 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA 1275538..1276410 Staphylococcus aureus subsp. aureus COL 3238358 YP_186125.1 CDS topA NC_002951.2 1276590 1278659 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1276590..1278659 Staphylococcus aureus subsp. aureus COL 3238359 YP_186126.1 CDS gid NC_002951.2 1278815 1280122 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1278815..1280122 Staphylococcus aureus subsp. aureus COL 3238029 YP_186127.1 CDS xerC NC_002951.2 1280539 1281435 D identified by similarity to EGAD:14579; similarity to GP:9622622; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224; tyrosine recombinase XerC 1280539..1281435 Staphylococcus aureus subsp. aureus COL 3238030 YP_186128.1 CDS hslV NC_002951.2 1281432 1281977 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1281432..1281977 Staphylococcus aureus subsp. aureus COL 3238031 YP_186129.1 CDS hslU NC_002951.2 1282043 1283446 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1282043..1283446 Staphylococcus aureus subsp. aureus COL 3238032 YP_186130.1 CDS codY NC_002951.2 1283471 1284244 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1283471..1284244 Staphylococcus aureus subsp. aureus COL 3238033 YP_186131.2 CDS rpsB NC_002951.2 1284586 >1285350 D truncated; one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1284586..>1285350 Staphylococcus aureus subsp. aureus COL 3238505 YP_186132.1 CDS SACOL1275 NC_002951.2 1285396 1285509 D hypothetical protein 1285396..1285509 Staphylococcus aureus subsp. aureus COL 3238506 YP_186133.1 CDS tsf NC_002951.2 1285544 1286425 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1285544..1286425 Staphylococcus aureus subsp. aureus COL 3238507 YP_186134.1 CDS pyrH NC_002951.2 1286562 1287284 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1286562..1287284 Staphylococcus aureus subsp. aureus COL 3238508 YP_186135.1 CDS frr NC_002951.2 1287303 1287857 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1287303..1287857 Staphylococcus aureus subsp. aureus COL 3238509 YP_186136.1 CDS uppS NC_002951.2 1288230 1289000 D catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 1288230..1289000 Staphylococcus aureus subsp. aureus COL 3238385 YP_186137.1 CDS cdsA NC_002951.2 1289007 1289789 D identified by similarity to EGAD:108469; match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1289007..1289789 Staphylococcus aureus subsp. aureus COL 3238386 YP_186138.1 CDS SACOL1281 NC_002951.2 1290026 1291312 D identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1290026..1291312 Staphylococcus aureus subsp. aureus COL 3238387 YP_186139.1 CDS proS NC_002951.2 1291332 1293035 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1291332..1293035 Staphylococcus aureus subsp. aureus COL 3238388 YP_186140.1 CDS polC NC_002951.2 1293299 1297609 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1293299..1297609 Staphylococcus aureus subsp. aureus COL 3238389 YP_186141.1 CDS SACOL1284 NC_002951.2 1297899 1298366 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1297899..1298366 Staphylococcus aureus subsp. aureus COL 3238341 YP_186142.1 CDS nusA NC_002951.2 1298387 1299562 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1298387..1299562 Staphylococcus aureus subsp. aureus COL 3238342 YP_186143.1 CDS SACOL1286 NC_002951.2 1299583 1299867 D identified by similarity to OMNI:NTL01BH2418; match to protein family HMM PF04296; hypothetical protein 1299583..1299867 Staphylococcus aureus subsp. aureus COL 3238343 YP_186144.1 CDS SACOL1287 NC_002951.2 1299864 1300181 D identified by similarity to EGAD:9717; match to protein family HMM PF01248; 50S ribosomal protein L7 1299864..1300181 Staphylococcus aureus subsp. aureus COL 3238344 YP_186145.1 CDS infB NC_002951.2 1300186 1302303 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1300186..1302303 Staphylococcus aureus subsp. aureus COL 3238345 YP_186146.1 CDS rbfA NC_002951.2 1302689 1303039 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1302689..1303039 Staphylococcus aureus subsp. aureus COL 3238346 YP_186147.1 CDS truB NC_002951.2 1303208 1304125 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1303208..1304125 Staphylococcus aureus subsp. aureus COL 3236225 YP_186148.1 CDS ribF NC_002951.2 1304140 1305111 D identified by similarity to SP:P54575; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 1304140..1305111 Staphylococcus aureus subsp. aureus COL 3236226 YP_186149.1 CDS rpsO NC_002951.2 1305226 1305495 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1305226..1305495 Staphylococcus aureus subsp. aureus COL 3236227 YP_186150.1 CDS pnp NC_002951.2 1305865 1307961 D identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 1305865..1307961 Staphylococcus aureus subsp. aureus COL 3236228 YP_186151.1 CDS SACOL1294 NC_002951.2 1308299 1309870 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 1308299..1309870 Staphylococcus aureus subsp. aureus COL 3236229 YP_186152.1 CDS SACOL1295 NC_002951.2 1310117 1312495 D identified by similarity to EGAD:23720; match to protein family HMM PF01580; FtsK/SpoIIIE family protein 1310117..1312495 Staphylococcus aureus subsp. aureus COL 3236219 YP_186153.1 CDS SACOL1296 NC_002951.2 1312500 1313213 D identified by match to protein family HMM PF07702; GntR family transcriptional regulator 1312500..1313213 Staphylococcus aureus subsp. aureus COL 3236220 YP_186154.1 CDS SACOL1297 NC_002951.2 1313244 1314509 D identified by similarity to OMNI:NTL01BH2396; match to protein family HMM PF05193; hypothetical protein 1313244..1314509 Staphylococcus aureus subsp. aureus COL 3236221 YP_186155.1 CDS SACOL1298 NC_002951.2 1314509 1315795 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1314509..1315795 Staphylococcus aureus subsp. aureus COL 3236222 YP_186156.1 CDS SACOL1299 NC_002951.2 1315795 1316499 D identified by similarity to GP:10175011; match to protein family HMM PF00106; acetoacetyl-CoA reductase 1315795..1316499 Staphylococcus aureus subsp. aureus COL 3236223 YP_186157.1 CDS SACOL1300 NC_002951.2 1316604 1317431 D identified by similarity to GP:10175009; ACT domain-containing protein 1316604..1317431 Staphylococcus aureus subsp. aureus COL 3236224 YP_186158.1 CDS SACOL1301 NC_002951.2 1317450 1317842 D transcriptional regulator 1317450..1317842 Staphylococcus aureus subsp. aureus COL 3236360 YP_186159.1 CDS pgsA NC_002951.2 1317876 1318454 D identified by similarity to EGAD:30182; match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1317876..1318454 Staphylococcus aureus subsp. aureus COL 3236361 YP_186160.1 CDS SACOL1303 NC_002951.2 1318681 1319832 D identified by similarity to EGAD:108567; match to protein family HMM PF00994; match to protein family HMM TIGR00200; competence/damage-inducible protein CinA 1318681..1319832 Staphylococcus aureus subsp. aureus COL 3236362 YP_186161.1 CDS recA NC_002951.2 1319997 1321040 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1319997..1321040 Staphylococcus aureus subsp. aureus COL 3236363 YP_186162.1 CDS SACOL1305 NC_002951.2 1321394 1322953 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1321394..1322953 Staphylococcus aureus subsp. aureus COL 3236364 YP_186163.1 CDS SACOL1306 NC_002951.2 1323250 1323465 R identified by similarity to GB:AAO04562.1; hypothetical protein complement(1323250..1323465) Staphylococcus aureus subsp. aureus COL 3236365 YP_186164.1 CDS SACOL1307 NC_002951.2 1323639 1324436 D identified by similarity to EGAD:108574; match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein 1323639..1324436 Staphylococcus aureus subsp. aureus COL 3236354 YP_186165.1 CDS SACOL1308 NC_002951.2 1324576 1326336 D identified by match to protein family HMM PF01558; match to protein family HMM PF01855; pyruvate ferredoxin oxidoreductase subunit alpha 1324576..1326336 Staphylococcus aureus subsp. aureus COL 3236355 YP_186166.1 CDS SACOL1309 NC_002951.2 1326337 1327203 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1326337..1327203 Staphylococcus aureus subsp. aureus COL 3236356 YP_186167.1 CDS SACOL1310 NC_002951.2 1327297 1327590 D hypothetical protein 1327297..1327590 Staphylococcus aureus subsp. aureus COL 3236357 YP_186168.1 CDS miaB NC_002951.2 1327724 1329268 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1327724..1329268 Staphylococcus aureus subsp. aureus COL 3236358 YP_186169.1 CDS SACOL1313 NC_002951.2 1329269 1329634 D identified by similarity to EGAD:108740; hypothetical protein 1329269..1329634 Staphylococcus aureus subsp. aureus COL 3236359 YP_186170.1 CDS SACOL1314 NC_002951.2 1329661 1330152 D identified by similarity to OMNI:EF2778; match to protein family HMM TIGR02359; hypothetical protein 1329661..1330152 Staphylococcus aureus subsp. aureus COL 3236061 YP_186171.1 CDS hexA NC_002951.2 1330455 1333073 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1330455..1333073 Staphylococcus aureus subsp. aureus COL 3236062 YP_186172.1 CDS mutL NC_002951.2 1333086 1335095 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1333086..1335095 Staphylococcus aureus subsp. aureus COL 3236063 YP_186173.1 CDS glpP NC_002951.2 1335101 1335643 D identified by similarity to EGAD:18158; match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 1335101..1335643 Staphylococcus aureus subsp. aureus COL 3236064 YP_186174.1 CDS glpF NC_002951.2 1336108 1336926 D identified by similarity to EGAD:21817; match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 1336108..1336926 Staphylococcus aureus subsp. aureus COL 3236065 YP_186175.1 CDS glpK NC_002951.2 1337055 1338551 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1337055..1338551 Staphylococcus aureus subsp. aureus COL 3236394 YP_186176.1 CDS glpD NC_002951.2 1338709 1340382 D identified by similarity to EGAD:18115; match to protein family HMM PF01266; aerobic glycerol-3-phosphate dehydrogenase 1338709..1340382 Staphylococcus aureus subsp. aureus COL 3236395 YP_186177.1 CDS SACOL1322 NC_002951.2 1340532 1341446 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1340532..1341446 Staphylococcus aureus subsp. aureus COL 3236396 YP_186178.1 CDS miaA NC_002951.2 1341464 1342399 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1341464..1342399 Staphylococcus aureus subsp. aureus COL 3236397 YP_186179.1 CDS SACOL1324 NC_002951.2 1342414 1342647 D identified by similarity to EGAD:12661; match to protein family HMM PF01423; hfq protein 1342414..1342647 Staphylococcus aureus subsp. aureus COL 3236398 YP_186180.1 CDS gpxA1 NC_002951.2 1342869 1343345 R identified by similarity to EGAD:45646; match to protein family HMM PF00255; glutathione peroxidase complement(1342869..1343345) Staphylococcus aureus subsp. aureus COL 3236399 YP_186181.1 CDS SACOL1326 NC_002951.2 1343457 1344695 D identified by match to protein family HMM PF04471; GTP-binding protein 1343457..1344695 Staphylococcus aureus subsp. aureus COL 3236012 YP_186182.1 CDS SACOL1327 NC_002951.2 1344714 1345952 D identified by match to protein family HMM PF06838; hypothetical protein 1344714..1345952 Staphylococcus aureus subsp. aureus COL 3237273 YP_186183.1 CDS glnR NC_002951.2 1346195 1346563 D identified by similarity to EGAD:15799; match to protein family HMM PF00376; glutamine synthetase 1346195..1346563 Staphylococcus aureus subsp. aureus COL 3236141 YP_186184.1 CDS femC NC_002951.2 1346582 1347922 D identified by similarity to EGAD:102439; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase 1346582..1347922 Staphylococcus aureus subsp. aureus COL 3237965 YP_186185.1 CDS SACOL1331 NC_002951.2 1348415 1348612 D hypothetical protein 1348415..1348612 Staphylococcus aureus subsp. aureus COL 3237904 YP_186186.1 CDS SACOL1332 NC_002951.2 1349301 1349525 D hypothetical protein 1349301..1349525 Staphylococcus aureus subsp. aureus COL 3237283 YP_186187.1 CDS SACOL1333 NC_002951.2 1349819 1350025 D hypothetical protein 1349819..1350025 Staphylococcus aureus subsp. aureus COL 3237882 YP_186188.1 CDS SACOL1334 NC_002951.2 1350726 1350836 D hypothetical protein 1350726..1350836 Staphylococcus aureus subsp. aureus COL 3237894 YP_186189.1 CDS SACOL1335 NC_002951.2 1351264 1351449 D hypothetical protein 1351264..1351449 Staphylococcus aureus subsp. aureus COL 3237141 YP_186190.1 CDS SACOL1336 NC_002951.2 1351961 1352065 D hypothetical protein 1351961..1352065 Staphylococcus aureus subsp. aureus COL 3237260 YP_186191.1 CDS SACOL1337 NC_002951.2 1352098 1352193 D hypothetical protein 1352098..1352193 Staphylococcus aureus subsp. aureus COL 3237695 YP_186192.1 CDS SACOL1338 NC_002951.2 1352194 1352445 D hypothetical protein 1352194..1352445 Staphylococcus aureus subsp. aureus COL 3236048 YP_186193.1 CDS SACOL1339 NC_002951.2 1352650 1353075 D hypothetical protein 1352650..1353075 Staphylococcus aureus subsp. aureus COL 3236285 YP_186194.1 CDS SACOL1340 NC_002951.2 1353196 1353444 D hypothetical protein 1353196..1353444 Staphylococcus aureus subsp. aureus COL 3237344 YP_186195.1 CDS SACOL1341 NC_002951.2 1353574 1353675 D hypothetical protein 1353574..1353675 Staphylococcus aureus subsp. aureus COL 3237056 YP_186196.1 CDS SACOL1342 NC_002951.2 1353721 1353987 D hypothetical protein 1353721..1353987 Staphylococcus aureus subsp. aureus COL 3237265 YP_186197.1 CDS SACOL1344 NC_002951.2 1354324 1354458 D hypothetical protein 1354324..1354458 Staphylococcus aureus subsp. aureus COL 3237301 YP_186198.1 CDS SACOL1345 NC_002951.2 1354549 1354839 D hypothetical protein 1354549..1354839 Staphylococcus aureus subsp. aureus COL 3237300 YP_186199.1 CDS SACOL1346 NC_002951.2 1354850 1355044 D hypothetical protein 1354850..1355044 Staphylococcus aureus subsp. aureus COL 3236116 YP_186200.1 CDS SACOL1347 NC_002951.2 1355094 1355435 D hypothetical protein 1355094..1355435 Staphylococcus aureus subsp. aureus COL 3237195 YP_186201.1 CDS SACOL1348 NC_002951.2 1355442 1355633 D identified by similarity to GB:AAO04588.1; hypothetical protein 1355442..1355633 Staphylococcus aureus subsp. aureus COL 3237885 YP_186202.1 CDS SACOL1349 NC_002951.2 1356182 1357207 R identified by similarity to OMNI:PG0474; hypothetical protein complement(1356182..1357207) Staphylococcus aureus subsp. aureus COL 3236144 YP_186203.1 CDS SACOL1350 NC_002951.2 1357477 1357674 D identified by similarity to GB:AAO04593.1; hypothetical protein 1357477..1357674 Staphylococcus aureus subsp. aureus COL 3237974 YP_186204.1 CDS cls1 NC_002951.2 1357732 1359213 D identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 1357732..1359213 Staphylococcus aureus subsp. aureus COL 3237976 YP_186205.1 CDS SACOL1352 NC_002951.2 1359388 1360296 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1359388..1360296 Staphylococcus aureus subsp. aureus COL 3237330 YP_186206.1 CDS SACOL1353 NC_002951.2 1360265 1360996 D ABC transporter permease 1360265..1360996 Staphylococcus aureus subsp. aureus COL 3236077 YP_186207.1 CDS SACOL1354 NC_002951.2 1361000 1362091 D identified by match to protein family HMM PF02518; sensor histidine kinase 1361000..1362091 Staphylococcus aureus subsp. aureus COL 3236156 YP_186208.1 CDS SACOL1355 NC_002951.2 1362088 1362690 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator 1362088..1362690 Staphylococcus aureus subsp. aureus COL 3237166 YP_186209.1 CDS SACOL1356 NC_002951.2 1362963 1363070 D hypothetical protein 1362963..1363070 Staphylococcus aureus subsp. aureus COL 3237568 YP_186210.1 CDS SACOL1357 NC_002951.2 1363130 1363663 D identified by match to protein family HMM PF00565; thermonuclease 1363130..1363663 Staphylococcus aureus subsp. aureus COL 3237703 YP_186211.1 CDS SACOL1358 NC_002951.2 1363806 1364660 R identified by similarity to GB:AAO04603.1; hypothetical protein complement(1363806..1364660) Staphylococcus aureus subsp. aureus COL 3237343 YP_186212.1 CDS SACOL1359 NC_002951.2 1364976 1365566 D identified by similarity to GB:AAO04604.1; hypothetical protein 1364976..1365566 Staphylococcus aureus subsp. aureus COL 3237168 YP_186213.1 CDS SACOL1360 NC_002951.2 1365620 1367002 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(1365620..1367002) Staphylococcus aureus subsp. aureus COL 3237434 YP_186214.1 CDS SACOL1361 NC_002951.2 1367008 1367115 D hypothetical protein 1367008..1367115 Staphylococcus aureus subsp. aureus COL 3237161 YP_186215.1 CDS hom NC_002951.2 1367193 1368473 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1367193..1368473 Staphylococcus aureus subsp. aureus COL 3237612 YP_186216.1 CDS thrC NC_002951.2 1368479 1369540 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1368479..1369540 Staphylococcus aureus subsp. aureus COL 3236145 YP_186217.1 CDS thrB NC_002951.2 1369542 1370456 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1369542..1370456 Staphylococcus aureus subsp. aureus COL 3236142 YP_186218.1 CDS SACOL1365 NC_002951.2 1370514 1371317 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase 1370514..1371317 Staphylococcus aureus subsp. aureus COL 3237316 YP_186219.1 CDS SACOL1366 NC_002951.2 1371610 1371924 R identified by similarity to GB:AAO04611.1; hypothetical protein complement(1371610..1371924) Staphylococcus aureus subsp. aureus COL 3237329 YP_186220.1 CDS SACOL1367 NC_002951.2 1372142 1373596 R identified by match to protein family HMM PF00324; amino acid permease complement(1372142..1373596) Staphylococcus aureus subsp. aureus COL 3237332 YP_186221.1 CDS kataA NC_002951.2 1373896 1375317 D identified by similarity to EGAD:29401; match to protein family HMM PF00199; catalase 1373896..1375317 Staphylococcus aureus subsp. aureus COL 3236085 YP_186222.1 CDS rpmG NC_002951.2 1375408 1375557 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1375408..1375557 Staphylococcus aureus subsp. aureus COL 3237135 YP_186223.1 CDS rpsN NC_002951.2 1376011 1376280 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1376011..1376280 Staphylococcus aureus subsp. aureus COL 3237267 YP_186224.1 CDS guaC NC_002951.2 1376437 1377414 D identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306; guanosine 5'-monophosphate oxidoreductase 1376437..1377414 Staphylococcus aureus subsp. aureus COL 3237315 YP_186225.1 CDS SACOL1372 NC_002951.2 1377411 1377515 R hypothetical protein complement(1377411..1377515) Staphylococcus aureus subsp. aureus COL 3237704 YP_186226.1 CDS SACOL1373 NC_002951.2 1377589 1378452 D identified by similarity to EGAD:107961; hypothetical protein 1377589..1378452 Staphylococcus aureus subsp. aureus COL 3237305 YP_186227.1 CDS lexA NC_002951.2 1378832 1379455 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1378832..1379455) Staphylococcus aureus subsp. aureus COL 3237666 YP_186228.1 CDS SACOL1375 NC_002951.2 1379598 1379831 D identified by similarity to GB:AAO04620.1; hypothetical protein 1379598..1379831 Staphylococcus aureus subsp. aureus COL 3237325 YP_186229.1 CDS SACOL1376 NC_002951.2 1379967 1380206 D identified by similarity to OMNI:NTL01SPL1328; match to protein family HMM PF05979; hypothetical protein 1379967..1380206 Staphylococcus aureus subsp. aureus COL 3237534 YP_186230.1 CDS tkt NC_002951.2 1380327 1382315 D identified by similarity to EGAD:29878; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 1380327..1382315 Staphylococcus aureus subsp. aureus COL 3237261 YP_186231.1 CDS SACOL1378 NC_002951.2 1382593 1382835 D identified by similarity to SP:Q8CSP3; match to protein family HMM PF03672; hypothetical protein 1382593..1382835 Staphylococcus aureus subsp. aureus COL 3236094 YP_186232.1 CDS SACOL1379 NC_002951.2 1382822 1382920 D hypothetical protein 1382822..1382920 Staphylococcus aureus subsp. aureus COL 3237337 YP_186233.1 CDS SACOL1380 NC_002951.2 1383014 1383481 D identified by similarity to EGAD:29885; match to protein family HMM PF07301; hypothetical protein 1383014..1383481 Staphylococcus aureus subsp. aureus COL 3236269 YP_186234.1 CDS sbcD NC_002951.2 1383605 1384726 D identified by similarity to EGAD:9310; match to protein family HMM PF00149; match to protein family HMM TIGR00619; exonuclease SbcD 1383605..1384726 Staphylococcus aureus subsp. aureus COL 3236271 YP_186235.1 CDS sbcC NC_002951.2 1384730 1387759 D identified by similarity to EGAD:7288; exonuclease SbcC 1384730..1387759 Staphylococcus aureus subsp. aureus COL 3237143 YP_186236.1 CDS mscL NC_002951.2 1387830 1388192 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(1387830..1388192) Staphylococcus aureus subsp. aureus COL 3237602 YP_186237.1 CDS opuD1 NC_002951.2 1388396 1390042 D identified by similarity to EGAD:45763; match to protein family HMM PF02028; match to protein family HMM TIGR00842; BCCT family osmoprotectant transporter 1388396..1390042 Staphylococcus aureus subsp. aureus COL 3238581 YP_186238.1 CDS acnA NC_002951.2 1390934 1393639 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1390934..1393639 Staphylococcus aureus subsp. aureus COL 3238094 YP_186239.1 CDS SACOL1386 NC_002951.2 1393819 1394286 D identified by similarity to GP:10174908; match to protein family HMM PF03061; match to protein family HMM TIGR00051; hypothetical protein 1393819..1394286 Staphylococcus aureus subsp. aureus COL 3238136 YP_186240.1 CDS SACOL1387 NC_002951.2 1394493 1394789 R identified by similarity to EGAD:109071; match to protein family HMM PF07113; hypothetical protein complement(1394493..1394789) Staphylococcus aureus subsp. aureus COL 3238038 YP_186241.1 CDS SACOL1388 NC_002951.2 1395165 1395773 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein complement(1395165..1395773) Staphylococcus aureus subsp. aureus COL 3237152 YP_186242.1 CDS parE NC_002951.2 1395973 1397970 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1395973..1397970 Staphylococcus aureus subsp. aureus COL 3236245 YP_186243.1 CDS parC NC_002951.2 1397970 1400372 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1397970..1400372 Staphylococcus aureus subsp. aureus COL 3237159 YP_186244.1 CDS SACOL1392 NC_002951.2 1400622 1402097 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1400622..1402097 Staphylococcus aureus subsp. aureus COL 3236127 YP_186245.1 CDS SACOL1393 NC_002951.2 1402582 1403433 D identified by similarity to SP:P39805; match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 1402582..1403433 Staphylococcus aureus subsp. aureus COL 3236319 YP_186246.1 CDS SACOL1394 NC_002951.2 1403408 1403575 D hypothetical protein 1403408..1403575 Staphylococcus aureus subsp. aureus COL 3237562 YP_186247.1 CDS SACOL1395 NC_002951.2 1403568 1404776 D identified by similarity to EGAD:108679; match to protein family HMM PF01594; hypothetical protein 1403568..1404776 Staphylococcus aureus subsp. aureus COL 3237576 YP_186248.1 CDS fmtC NC_002951.2 1405257 1407779 D identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; fmtC protein 1405257..1407779 Staphylococcus aureus subsp. aureus COL 3237597 YP_186249.1 CDS msrA NC_002951.2 1407982 1408491 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1407982..1408491) Staphylococcus aureus subsp. aureus COL 3237919 YP_186250.1 CDS SACOL1398 NC_002951.2 1408628 1409611 D identified by similarity to EGAD:20070; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 1408628..1409611 Staphylococcus aureus subsp. aureus COL 3237702 YP_186251.1 CDS dmpI NC_002951.2 1409699 1409884 R identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; 4-oxalocrotonate tautomerase complement(1409699..1409884) Staphylococcus aureus subsp. aureus COL 3236692 YP_186252.1 CDS SACOL1400 NC_002951.2 1410032 1411294 D identified by match to protein family HMM PF00817; ImpB/MucB/SamB family protein 1410032..1411294 Staphylococcus aureus subsp. aureus COL 3236153 YP_186253.1 CDS tyrA NC_002951.2 1411431 1412522 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1411431..1412522) Staphylococcus aureus subsp. aureus COL 3236275 YP_186254.1 CDS SACOL1402 NC_002951.2 1412687 1413718 D identified by similarity to EGAD:108848; match to protein family HMM PF05343; glutamyl aminopeptidase 1412687..1413718 Staphylococcus aureus subsp. aureus COL 3237834 YP_186255.1 CDS trpE NC_002951.2 1414210 1415616 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1414210..1415616 Staphylococcus aureus subsp. aureus COL 3236120 YP_186256.1 CDS trpG NC_002951.2 1415613 1416179 D identified by similarity to SP:Q02003; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 1415613..1416179 Staphylococcus aureus subsp. aureus COL 3236143 YP_186257.1 CDS trpD NC_002951.2 1416185 1417183 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1416185..1417183 Staphylococcus aureus subsp. aureus COL 3237298 YP_186258.1 CDS trpC NC_002951.2 1417185 1417967 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1417185..1417967 Staphylococcus aureus subsp. aureus COL 3237335 YP_186259.1 CDS trpF NC_002951.2 1417964 1418599 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1417964..1418599 Staphylococcus aureus subsp. aureus COL 3237862 YP_186260.1 CDS trpB NC_002951.2 1418592 1419806 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1418592..1419806 Staphylococcus aureus subsp. aureus COL 3237588 YP_186261.1 CDS trpA NC_002951.2 1419799 1420527 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1419799..1420527 Staphylococcus aureus subsp. aureus COL 3237599 YP_186262.1 CDS femA NC_002951.2 1420810 1422111 D identified by similarity to EGAD:29547; match to protein family HMM PF02388; femA protein 1420810..1422111 Staphylococcus aureus subsp. aureus COL 3236169 YP_186263.1 CDS SACOL1411 NC_002951.2 1422130 1423389 D identified by similarity to EGAD:29548; match to protein family HMM PF02388; femB protein 1422130..1423389 Staphylococcus aureus subsp. aureus COL 3236170 YP_186264.1 CDS SACOL1412 NC_002951.2 1424072 1424839 D identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hydrolase-like protein 1424072..1424839 Staphylococcus aureus subsp. aureus COL 3236171 YP_186265.1 CDS SACOL1413 NC_002951.2 1424887 1425360 R hypothetical protein complement(1424887..1425360) Staphylococcus aureus subsp. aureus COL 3236172 YP_186266.1 CDS SACOL1414 NC_002951.2 1425484 1426185 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(1425484..1426185) Staphylococcus aureus subsp. aureus COL 3236173 YP_186267.1 CDS SACOL1415 NC_002951.2 1426178 1426951 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(1426178..1426951) Staphylococcus aureus subsp. aureus COL 3236562 YP_186268.1 CDS SACOL1416 NC_002951.2 1426938 1427768 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(1426938..1427768) Staphylococcus aureus subsp. aureus COL 3236563 YP_186269.1 CDS SACOL1417 NC_002951.2 1427761 1428747 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(1427761..1428747) Staphylococcus aureus subsp. aureus COL 3236564 YP_186270.1 CDS SACOL1418 NC_002951.2 1429051 1429395 R identified by similarity to GB:AAO04661.1; hypothetical protein complement(1429051..1429395) Staphylococcus aureus subsp. aureus COL 3236565 YP_186271.1 CDS SACOL1419 NC_002951.2 1429600 1431414 D identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181; oligoendopeptidase F 1429600..1431414 Staphylococcus aureus subsp. aureus COL 3236566 YP_186272.1 CDS SACOL1420 NC_002951.2 1431554 1432195 R identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU complement(1431554..1432195) Staphylococcus aureus subsp. aureus COL 3236567 YP_186273.1 CDS SACOL1421 NC_002951.2 1432202 1433053 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(1432202..1433053) Staphylococcus aureus subsp. aureus COL 3236568 YP_186274.1 CDS SACOL1422 NC_002951.2 1433100 1434017 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease complement(1433100..1434017) Staphylococcus aureus subsp. aureus COL 3236371 YP_186275.1 CDS SACOL1423 NC_002951.2 1434019 1434945 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease complement(1434019..1434945) Staphylococcus aureus subsp. aureus COL 3236372 YP_186276.1 CDS SACOL1424 NC_002951.2 1435136 1436119 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein complement(1435136..1436119) Staphylococcus aureus subsp. aureus COL 3236373 YP_186277.1 CDS SACOL1425 NC_002951.2 1436659 1436955 D identified by similarity to GP:8918792; truncated IS1272 transposase 1436659..1436955 Staphylococcus aureus subsp. aureus COL 3236374 YP_186278.1 CDS SACOL1426 NC_002951.2 1437091 1437993 R identified by similarity to EGAD:107281; hypothetical protein complement(1437091..1437993) Staphylococcus aureus subsp. aureus COL 3236375 YP_186279.1 CDS SACOL1427 NC_002951.2 1438140 1439741 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1438140..1439741 Staphylococcus aureus subsp. aureus COL 3236376 YP_186280.1 CDS lysC NC_002951.2 1440601 1441806 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1440601..1441806 Staphylococcus aureus subsp. aureus COL 3236208 YP_186281.1 CDS asd NC_002951.2 1441870 1442859 D identified by similarity to EGAD:15165; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate semialdehyde dehydrogenase 1441870..1442859 Staphylococcus aureus subsp. aureus COL 3236209 YP_186282.1 CDS dapA NC_002951.2 1442861 1443748 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1442861..1443748 Staphylococcus aureus subsp. aureus COL 3236210 YP_186283.1 CDS dapB NC_002951.2 1443745 1444467 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1443745..1444467 Staphylococcus aureus subsp. aureus COL 3236211 YP_186284.1 CDS dapD NC_002951.2 1444494 1445213 D identified by similarity to EGAD:165602; match to protein family HMM PF00132; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1444494..1445213 Staphylococcus aureus subsp. aureus COL 3236212 YP_186285.1 CDS SACOL1433 NC_002951.2 1445356 1446507 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase 1445356..1446507 Staphylococcus aureus subsp. aureus COL 3236553 YP_186286.1 CDS SACOL1434 NC_002951.2 1446512 1447597 D identified by match to protein family HMM PF00842; match to protein family HMM PF01168; alanine racemase 1446512..1447597 Staphylococcus aureus subsp. aureus COL 3236554 YP_186287.1 CDS lysA NC_002951.2 1447587 1448852 D identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1447587..1448852 Staphylococcus aureus subsp. aureus COL 3236555 YP_186288.1 CDS SACOL1436 NC_002951.2 1449092 1449493 R hypothetical protein complement(1449092..1449493) Staphylococcus aureus subsp. aureus COL 3236556 YP_186289.1 CDS SACOL1437 NC_002951.2 1449690 1449890 R identified by match to protein family HMM PF00313; CSD family cold shock protein complement(1449690..1449890) Staphylococcus aureus subsp. aureus COL 3236557 YP_186290.1 CDS SACOL1438 NC_002951.2 1450061 1450369 R identified by similarity to OMNI:EF2065; match to protein family HMM PF06279; hypothetical protein complement(1450061..1450369) Staphylococcus aureus subsp. aureus COL 3236558 YP_186291.1 CDS SACOL1439 NC_002951.2 1450532 1450801 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1450532..1450801 Staphylococcus aureus subsp. aureus COL 3236547 YP_186292.1 CDS SACOL1440 NC_002951.2 1450820 1451449 D identified by similarity to EGAD:19663; hypothetical protein 1450820..1451449 Staphylococcus aureus subsp. aureus COL 3236548 YP_186293.1 CDS SACOL1441 NC_002951.2 1451481 1452617 D identified by similarity to EGAD:143199; match to protein family HMM PF05816; tellurite resistance protein 1451481..1452617 Staphylococcus aureus subsp. aureus COL 3236549 YP_186295.1 CDS brnQ3 NC_002951.2 1453630 1454973 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(1453630..1454973) Staphylococcus aureus subsp. aureus COL 3236551 YP_186296.1 CDS SACOL1444 NC_002951.2 1455198 1457084 R identified by similarity to EGAD:109250; hypothetical protein complement(1455198..1457084) Staphylococcus aureus subsp. aureus COL 3236552 YP_186297.1 CDS SACOL1445 NC_002951.2 1457098 1457889 R identified by similarity to EGAD:42972; CbbQ/NirQ/NorQ/GpvN family protein complement(1457098..1457889) Staphylococcus aureus subsp. aureus COL 3238280 YP_186298.1 CDS SACOL1446 NC_002951.2 1458070 1458273 R identified by similarity to GP:10174822; hypothetical protein complement(1458070..1458273) Staphylococcus aureus subsp. aureus COL 3238281 YP_186299.1 CDS SACOL1447 NC_002951.2 1458302 1459111 R identified by similarity to GP:10174794; hypothetical protein complement(1458302..1459111) Staphylococcus aureus subsp. aureus COL 3238282 YP_186300.1 CDS sucB NC_002951.2 1459691 1460959 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(1459691..1460959) Staphylococcus aureus subsp. aureus COL 3238283 YP_186301.1 CDS sucA NC_002951.2 1460973 1463771 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1460973..1463771) Staphylococcus aureus subsp. aureus COL 3238284 YP_186302.1 CDS arlS NC_002951.2 1464055 1465410 R identified by similarity to GP:9230553; similarity to OMNI:SA1450; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase ArlS complement(1464055..1465410) Staphylococcus aureus subsp. aureus COL 3238285 YP_186303.1 CDS arlR NC_002951.2 1465407 1466066 R identified by similarity to GP:9230552; similarity to OMNI:SA1451; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator ArlR complement(1465407..1466066) Staphylococcus aureus subsp. aureus COL 3238224 YP_186304.1 CDS SACOL1452 NC_002951.2 1466854 1467468 R identified by match to protein family HMM PF01569; hypothetical protein complement(1466854..1467468) Staphylococcus aureus subsp. aureus COL 3238225 YP_186305.1 CDS murG NC_002951.2 1467485 1468555 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(1467485..1468555) Staphylococcus aureus subsp. aureus COL 3238226 YP_186306.1 CDS SACOL1455 NC_002951.2 1469477 1470967 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(1469477..1470967) Staphylococcus aureus subsp. aureus COL 3238127 YP_186307.1 CDS SACOL1456 NC_002951.2 1471159 1471380 R identified by similarity to OMNI:EF1680; match to protein family HMM PF06855; hypothetical protein complement(1471159..1471380) Staphylococcus aureus subsp. aureus COL 3238072 YP_186308.1 CDS SACOL1457 NC_002951.2 1471380 1471880 R identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system, IIA component complement(1471380..1471880) Staphylococcus aureus subsp. aureus COL 3238636 YP_186309.1 CDS SACOL1460 NC_002951.2 1472932 1473771 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; hypothetical protein complement(1472932..1473771) Staphylococcus aureus subsp. aureus COL 3238616 YP_186310.1 CDS folA NC_002951.2 1473786 1474265 R identified by similarity to SP:P10167; match to protein family HMM PF00186; dihydrofolate reductase complement(1473786..1474265) Staphylococcus aureus subsp. aureus COL 3238319 YP_186311.1 CDS thyA NC_002951.2 1474465 1475421 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1474465..1475421) Staphylococcus aureus subsp. aureus COL 3238178 YP_186312.1 CDS SACOL1464 NC_002951.2 1475845 1476282 R identified by similarity to EGAD:45736; match to protein family HMM PF06491; hypothetical protein complement(1475845..1476282) Staphylococcus aureus subsp. aureus COL 3238106 YP_186313.1 CDS SACOL1465 NC_002951.2 1476298 1477422 R identified by similarity to OMNI:NTL01BH1721; match to protein family HMM PF03130; hypothetical protein complement(1476298..1477422) Staphylococcus aureus subsp. aureus COL 3238354 YP_186314.1 CDS SACOL1466 NC_002951.2 1477460 1477711 R identified by similarity to GP:5738608; hypothetical protein complement(1477460..1477711) Staphylococcus aureus subsp. aureus COL 3238370 YP_186315.1 CDS SACOL1467 NC_002951.2 1477723 1477917 R identified by similarity to EGAD:45731; hypothetical protein complement(1477723..1477917) Staphylococcus aureus subsp. aureus COL 3237581 YP_186316.1 CDS SACOL1468 NC_002951.2 1478162 1478866 D identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 1478162..1478866 Staphylococcus aureus subsp. aureus COL 3237598 YP_186317.1 CDS SACOL1469 NC_002951.2 1478931 1479062 R hypothetical protein complement(1478931..1479062) Staphylococcus aureus subsp. aureus COL 3237993 YP_186318.1 CDS SACOL1471 NC_002951.2 1479407 1479808 D identified by match to protein family HMM PF00075; cell wall enzyme EbsB 1479407..1479808 Staphylococcus aureus subsp. aureus COL 3237553 YP_186319.1 CDS ebh NC_002951.2 1479867 1511363 R identified by match to protein family HMM PF01468; match to protein family HMM PF04650; match to protein family HMM PF07554; match to protein family HMM PF07564; match to protein family HMM TIGR01168; match to protein family HMM TIGR01643; cell wall associated fibronectin-binding protein complement(1479867..1511363) Staphylococcus aureus subsp. aureus COL 3237115 YP_186320.1 CDS SACOL1475 NC_002951.2 1511761 1513152 R identified by match to protein family HMM PF07690; drug transporter complement(1511761..1513152) Staphylococcus aureus subsp. aureus COL 3238491 YP_186321.1 CDS SACOL1476 NC_002951.2 1513309 1514631 R identified by match to protein family HMM PF00324; amino acid permease complement(1513309..1514631) Staphylococcus aureus subsp. aureus COL 3237275 YP_186322.1 CDS ilvA1 NC_002951.2 1514662 1515702 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase complement(1514662..1515702) Staphylococcus aureus subsp. aureus COL 3236081 YP_186323.1 CDS ald1 NC_002951.2 1515797 1516915 R identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(1515797..1516915) Staphylococcus aureus subsp. aureus COL 3237750 YP_186324.1 CDS SACOL1479 NC_002951.2 1517390 1518268 R identified by match to protein family HMM PF01367; match to protein family HMM PF02739; 5'-3' exonuclease complement(1517390..1518268) Staphylococcus aureus subsp. aureus COL 3237691 YP_186325.1 CDS SACOL1480 NC_002951.2 1518288 1521728 R identified by similarity to OMNI:NTL01BH1703; hypothetical protein complement(1518288..1521728) Staphylococcus aureus subsp. aureus COL 3238626 YP_186326.1 CDS SACOL1481 NC_002951.2 1522032 1523372 D identified by similarity to OMNI:NTL01BH1857; match to protein family HMM PF03413; match to protein family HMM PF03929; hypothetical protein 1522032..1523372 Staphylococcus aureus subsp. aureus COL 3237933 YP_186327.1 CDS SACOL1482 NC_002951.2 1523578 1523910 R hypothetical protein complement(1523578..1523910) Staphylococcus aureus subsp. aureus COL 3236284 YP_186328.1 CDS SACOL1483 NC_002951.2 1523994 1525139 R identified by similarity to EGAD:37711; match to protein family HMM PF01170; hypothetical protein complement(1523994..1525139) Staphylococcus aureus subsp. aureus COL 3237809 YP_186329.1 CDS SACOL1484 NC_002951.2 1525790 1526134 R identified by match to protein family HMM PF05103; hypothetical protein complement(1525790..1526134) Staphylococcus aureus subsp. aureus COL 3236286 YP_186330.1 CDS SACOL1485 NC_002951.2 1526148 1526711 R identified by similarity to EGAD:37709; match to protein family HMM PF06908; hypothetical protein complement(1526148..1526711) Staphylococcus aureus subsp. aureus COL 3237411 YP_186331.1 CDS SACOL1486 NC_002951.2 1526704 1527054 R identified by similarity to OMNI:NTL01BH1710; hypothetical protein complement(1526704..1527054) Staphylococcus aureus subsp. aureus COL 3237555 YP_186332.1 CDS SACOL1488 NC_002951.2 1527488 1527613 D hypothetical protein 1527488..1527613 Staphylococcus aureus subsp. aureus COL 3237554 YP_186333.1 CDS recU NC_002951.2 1527594 1528220 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1527594..1528220 Staphylococcus aureus subsp. aureus COL 3237565 YP_186334.1 CDS pbp2 NC_002951.2 1528217 1530400 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 2 1528217..1530400 Staphylococcus aureus subsp. aureus COL 3237601 YP_186335.1 CDS SACOL1491 NC_002951.2 1530966 1531307 R identified by similarity to GB:AAO04736.1; hypothetical protein complement(1530966..1531307) Staphylococcus aureus subsp. aureus COL 3237940 YP_186336.1 CDS nth NC_002951.2 1531312 1531971 R identified by similarity to EGAD:18451; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(1531312..1531971) Staphylococcus aureus subsp. aureus COL 3237971 YP_186337.1 CDS SACOL1493 NC_002951.2 1531961 1532647 R identified by similarity to EGAD:16577; match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD complement(1531961..1532647) Staphylococcus aureus subsp. aureus COL 3237994 YP_186338.1 CDS asnC NC_002951.2 1532975 1534267 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1532975..1534267) Staphylococcus aureus subsp. aureus COL 3237887 YP_186339.1 CDS SACOL1495 NC_002951.2 1534589 1537282 R identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407; DNA polymerase III subunit epsilon/ATP-dependent helicase DinG complement(1534589..1537282) Staphylococcus aureus subsp. aureus COL 3237709 YP_186340.1 CDS birA NC_002951.2 1537306 1538277 R identified by similarity to EGAD:30996; match to protein family HMM PF03099; match to protein family HMM TIGR00121; birA bifunctional protein complement(1537306..1538277) Staphylococcus aureus subsp. aureus COL 3237611 YP_186341.1 CDS papS NC_002951.2 1538264 1539466 R catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(1538264..1539466) Staphylococcus aureus subsp. aureus COL 3237288 YP_186342.1 CDS SACOL1498 NC_002951.2 1539471 1540625 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(1539471..1540625) Staphylococcus aureus subsp. aureus COL 3237811 YP_186343.1 CDS SACOL1499 NC_002951.2 1540854 1541171 R identified by similarity to OMNI:NTL01BH1682; match to protein family HMM PF03819; hypothetical protein complement(1540854..1541171) Staphylococcus aureus subsp. aureus COL 3237635 YP_186344.1 CDS SACOL1500 NC_002951.2 1541508 1542215 R identified by similarity to OMNI:NTL01BH1680; match to protein family HMM PF04298; hypothetical protein complement(1541508..1542215) Staphylococcus aureus subsp. aureus COL 3237634 YP_186345.1 CDS SACOL1501 NC_002951.2 1542260 1542847 R identified by similarity to OMNI:NTL01BH1678; match to protein family HMM PF07187; hypothetical protein complement(1542260..1542847) Staphylococcus aureus subsp. aureus COL 3237644 YP_186346.1 CDS SACOL1502 NC_002951.2 1542837 1543412 R identified by similarity to OMNI:NTL01BH1673; hypothetical protein complement(1542837..1543412) Staphylococcus aureus subsp. aureus COL 3237956 YP_186347.1 CDS SACOL1503 NC_002951.2 1543426 1544670 R identified by similarity to EGAD:37740; hypothetical protein complement(1543426..1544670) Staphylococcus aureus subsp. aureus COL 3237707 YP_186348.1 CDS aroA NC_002951.2 1544677 1545975 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1544677..1545975) Staphylococcus aureus subsp. aureus COL 3237694 YP_186349.1 CDS aroB NC_002951.2 1545985 1547049 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(1545985..1547049) Staphylococcus aureus subsp. aureus COL 3237570 YP_186350.1 CDS aroC NC_002951.2 1547075 1548241 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1547075..1548241) Staphylococcus aureus subsp. aureus COL 3237903 YP_186351.1 CDS SACOL1507 NC_002951.2 1548627 1548827 R hypothetical protein complement(1548627..1548827) Staphylococcus aureus subsp. aureus COL 3237575 YP_186352.1 CDS SACOL1508 NC_002951.2 1548856 1548981 R hypothetical protein complement(1548856..1548981) Staphylococcus aureus subsp. aureus COL 3237808 YP_186353.1 CDS ndk NC_002951.2 1549036 1549485 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1549036..1549485) Staphylococcus aureus subsp. aureus COL 3237884 YP_186354.1 CDS SACOL1510 NC_002951.2 1549577 1550536 R identified by similarity to EGAD:97466; match to protein family HMM PF00348; polyprenyl synthetase complement(1549577..1550536) Staphylococcus aureus subsp. aureus COL 3237812 YP_186355.1 CDS ubiE NC_002951.2 1550538 1551263 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1550538..1551263) Staphylococcus aureus subsp. aureus COL 3237587 YP_186356.1 CDS SACOL1512 NC_002951.2 1551266 1551838 R identified by similarity to GB:AAO04756.1; hypothetical protein complement(1551266..1551838) Staphylococcus aureus subsp. aureus COL 3237620 YP_186357.1 CDS hup NC_002951.2 1552269 1552541 R identified by similarity to EGAD:8587; match to protein family HMM PF00216; DNA-binding protein HU complement(1552269..1552541) Staphylococcus aureus subsp. aureus COL 3237552 YP_186358.1 CDS gpsA NC_002951.2 1552712 1553710 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1552712..1553710) Staphylococcus aureus subsp. aureus COL 3237596 YP_186359.1 CDS engA NC_002951.2 1553727 1555037 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1553727..1555037) Staphylococcus aureus subsp. aureus COL 3237585 YP_186360.1 CDS rpsA NC_002951.2 1555259 1556434 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1555259..1556434) Staphylococcus aureus subsp. aureus COL 3237339 YP_186361.1 CDS cmk NC_002951.2 1557146 1557805 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1557146..1557805) Staphylococcus aureus subsp. aureus COL 3237910 YP_186362.1 CDS ansA NC_002951.2 1557882 1558850 D identified by similarity to EGAD:8552; match to protein family HMM PF00710; L-asparaginase 1557882..1558850 Staphylococcus aureus subsp. aureus COL 3237586 YP_186363.1 CDS SACOL1520 NC_002951.2 1558965 1559951 R identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase complement(1558965..1559951) Staphylococcus aureus subsp. aureus COL 3237980 YP_186364.1 CDS SACOL1521 NC_002951.2 1560112 1560228 R hypothetical protein complement(1560112..1560228) Staphylococcus aureus subsp. aureus COL 3237551 YP_186365.1 CDS SACOL1522 NC_002951.2 1560353 1561813 R identified by similarity to GP:1397239; match to protein family HMM PF01476; elastin binding protein complement(1560353..1561813) Staphylococcus aureus subsp. aureus COL 3237648 YP_186366.1 CDS recQ2 NC_002951.2 1561966 1563345 R identified by similarity to EGAD:37724; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ complement(1561966..1563345) Staphylococcus aureus subsp. aureus COL 3237732 YP_186367.1 CDS SACOL1524 NC_002951.2 1563335 1564288 R identified by similarity to EGAD:37723; hypothetical protein complement(1563335..1564288) Staphylococcus aureus subsp. aureus COL 3237558 YP_186368.1 CDS fer NC_002951.2 1564396 1564644 D identified by similarity to SP:P50727; ferredoxin 1564396..1564644 Staphylococcus aureus subsp. aureus COL 3237609 YP_186369.1 CDS SACOL1526 NC_002951.2 1564750 1565295 R identified by similarity to EGAD:37721; hypothetical protein complement(1564750..1565295) Staphylococcus aureus subsp. aureus COL 3237608 YP_186370.1 CDS SACOL1528 NC_002951.2 1565892 1566806 R hypothetical protein complement(1565892..1566806) Staphylococcus aureus subsp. aureus COL 3237293 YP_186371.1 CDS SACOL1529 NC_002951.2 1566821 1567027 R hypothetical protein complement(1566821..1567027) Staphylococcus aureus subsp. aureus COL 3237603 YP_186372.1 CDS SACOL1530 NC_002951.2 1567020 1567898 R hypothetical protein complement(1567020..1567898) Staphylococcus aureus subsp. aureus COL 3237574 YP_186373.1 CDS SACOL1531 NC_002951.2 1568016 1568933 R hypothetical protein complement(1568016..1568933) Staphylococcus aureus subsp. aureus COL 3237841 YP_186374.1 CDS SACOL1532 NC_002951.2 1569024 1571186 R hypothetical protein complement(1569024..1571186) Staphylococcus aureus subsp. aureus COL 3237961 YP_186375.1 CDS SACOL1533 NC_002951.2 1571179 1572048 R hypothetical protein complement(1571179..1572048) Staphylococcus aureus subsp. aureus COL 3237403 YP_186376.1 CDS srrB NC_002951.2 1572353 1574104 R identified by similarity to GP:7839534; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase SrrB complement(1572353..1574104) Staphylococcus aureus subsp. aureus COL 3237988 YP_186377.1 CDS srrA NC_002951.2 1574085 1574810 R identified by similarity to GP:7839533; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator SrrA complement(1574085..1574810) Staphylococcus aureus subsp. aureus COL 3237860 YP_186378.1 CDS rluB NC_002951.2 1574943 1575680 R identified by similarity to EGAD:14622; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1574943..1575680) Staphylococcus aureus subsp. aureus COL 3237734 YP_186379.1 CDS scpB NC_002951.2 1575673 1576215 R identified by similarity to EGAD:15088; match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B complement(1575673..1576215) Staphylococcus aureus subsp. aureus COL 3237564 YP_186380.1 CDS scpA NC_002951.2 1576208 1576939 R identified by similarity to EGAD:14314; match to protein family HMM PF02616; hypothetical protein complement(1576208..1576939) Staphylococcus aureus subsp. aureus COL 3237782 YP_186381.1 CDS SACOL1539 NC_002951.2 1577031 1577537 D identified by similarity to EGAD:12647; match to protein family HMM PF03745; hypothetical protein 1577031..1577537 Staphylococcus aureus subsp. aureus COL 3237874 YP_186382.1 CDS xerD NC_002951.2 1577615 1578502 R identified by similarity to EGAD:24225; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD complement(1577615..1578502) Staphylococcus aureus subsp. aureus COL 3237654 YP_186383.1 CDS SACOL1541 NC_002951.2 1578551 1579000 R identified by similarity to EGAD:14407; match to protein family HMM PF01475; FUR family transcriptional regulator complement(1578551..1579000) Staphylococcus aureus subsp. aureus COL 3237853 YP_186384.1 CDS SACOL1542 NC_002951.2 1579105 1579647 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1579105..1579647) Staphylococcus aureus subsp. aureus COL 3236300 YP_186385.1 CDS SACOL1543 NC_002951.2 1579729 1580637 D identified by match to protein family HMM PF00248; aldo/keto reductase oxidoreductase 1579729..1580637 Staphylococcus aureus subsp. aureus COL 3237580 YP_186386.1 CDS SACOL1544 NC_002951.2 1580853 1581101 R hypothetical protein complement(1580853..1581101) Staphylococcus aureus subsp. aureus COL 3237682 YP_186387.1 CDS SACOL1545 NC_002951.2 1581117 1581872 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(1581117..1581872) Staphylococcus aureus subsp. aureus COL 3237781 YP_186388.1 CDS proC NC_002951.2 1582014 1582829 D identified by similarity to EGAD:45894; match to protein family HMM PF01089; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1582014..1582829 Staphylococcus aureus subsp. aureus COL 3237752 YP_186389.1 CDS SACOL1548 NC_002951.2 1582934 1583854 R identified by match to protein family HMM PF00753; AtsA/ElaC family protein complement(1582934..1583854) Staphylococcus aureus subsp. aureus COL 3237779 YP_186390.1 CDS zwf NC_002951.2 1584167 1585651 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1584167..1585651 Staphylococcus aureus subsp. aureus COL 3237569 YP_186391.1 CDS SACOL1550 NC_002951.2 1585854 1586747 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 1585854..1586747 Staphylococcus aureus subsp. aureus COL 3237556 YP_186392.1 CDS malA NC_002951.2 1586830 1588479 R identified by similarity to EGAD:18543; match to protein family HMM PF00128; alpha-D-1,4-glucosidase complement(1586830..1588479) Staphylococcus aureus subsp. aureus COL 3237582 YP_186393.1 CDS malR NC_002951.2 1588495 1589514 R identified by similarity to EGAD:23070; match to protein family HMM PF00356; match to protein family HMM PF00532; maltose operon transcriptional repressor complement(1588495..1589514) Staphylococcus aureus subsp. aureus COL 3237327 YP_186394.1 CDS SACOL1553 NC_002951.2 1589708 1590079 R identified by match to protein family HMM PF00903; glyoxalase complement(1589708..1590079) Staphylococcus aureus subsp. aureus COL 3237917 YP_186395.1 CDS gnd NC_002951.2 1590298 1591704 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1590298..1591704) Staphylococcus aureus subsp. aureus COL 3237561 YP_186396.1 CDS SACOL1555 NC_002951.2 1591772 1592905 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883; M20/M25/M40 family peptidase complement(1591772..1592905) Staphylococcus aureus subsp. aureus COL 3237560 YP_186397.1 CDS SACOL1556 NC_002951.2 1593168 1593347 D hypothetical protein 1593168..1593347 Staphylococcus aureus subsp. aureus COL 3237465 YP_186398.1 CDS SACOL1557 NC_002951.2 1593474 1594454 R identified by similarity to EGAD:45880; match to protein family HMM PF06081; hypothetical protein complement(1593474..1594454) Staphylococcus aureus subsp. aureus COL 3237572 YP_186399.1 CDS SACOL1558 NC_002951.2 1594468 1594905 R identified by similarity to EGAD:45876; match to protein family HMM PF06491; hypothetical protein complement(1594468..1594905) Staphylococcus aureus subsp. aureus COL 3237457 YP_186400.1 CDS SACOL1559 NC_002951.2 1594978 1595076 R hypothetical protein complement(1594978..1595076) Staphylococcus aureus subsp. aureus COL 3237583 YP_186401.1 CDS SACOL1560 NC_002951.2 1595256 1596530 R identified by similarity to EGAD:13011; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; 2-oxoisovalerate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase complement(1595256..1596530) Staphylococcus aureus subsp. aureus COL 3237932 YP_186402.1 CDS SACOL1561 NC_002951.2 1596543 1597526 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; 2-oxoisovalerate dehydrogenase, E1 component subunit beta complement(1596543..1597526) Staphylococcus aureus subsp. aureus COL 3237795 YP_186403.1 CDS SACOL1562 NC_002951.2 1597526 1598518 R identified by match to protein family HMM PF00676; 2-oxoisovalerate dehydrogenase, E1 component subunit alpha complement(1597526..1598518) Staphylococcus aureus subsp. aureus COL 3237906 YP_186404.1 CDS lpdA NC_002951.2 1598534 1599955 R identified by similarity to SP:P54533; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase complement(1598534..1599955) Staphylococcus aureus subsp. aureus COL 3236287 YP_186405.1 CDS recN NC_002951.2 1600106 1601785 R identified by similarity to EGAD:12400; match to protein family HMM TIGR00634; DNA repair protein RecN complement(1600106..1601785) Staphylococcus aureus subsp. aureus COL 3237920 YP_186406.1 CDS argR NC_002951.2 1601801 1602253 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(1601801..1602253) Staphylococcus aureus subsp. aureus COL 3237573 YP_186407.1 CDS ispA NC_002951.2 1602685 1603566 R identified by similarity to SP:Q08291; match to protein family HMM PF00348; geranyltranstransferase complement(1602685..1603566) Staphylococcus aureus subsp. aureus COL 3237242 YP_186408.1 CDS xseB NC_002951.2 1603544 1603774 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1603544..1603774) Staphylococcus aureus subsp. aureus COL 3237334 YP_186409.1 CDS xseA NC_002951.2 1603767 1605104 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1603767..1605104) Staphylococcus aureus subsp. aureus COL 3237842 YP_186410.1 CDS nusB NC_002951.2 1605121 1605510 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1605121..1605510) Staphylococcus aureus subsp. aureus COL 3237373 YP_186411.1 CDS SACOL1570 NC_002951.2 1605570 1605932 R identified by similarity to EGAD:45861; match to protein family HMM PF03780; hypothetical protein complement(1605570..1605932) Staphylococcus aureus subsp. aureus COL 3237733 YP_186412.1 CDS accC NC_002951.2 1605947 1607302 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(1605947..1607302) Staphylococcus aureus subsp. aureus COL 3237941 YP_186413.1 CDS accB NC_002951.2 1607302 1607766 R identified by similarity to SP:P49786; match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1607302..1607766) Staphylococcus aureus subsp. aureus COL 3236296 YP_186414.1 CDS SACOL1574 NC_002951.2 1609250 1609591 R identified by similarity to EGAD:108527; hypothetical protein complement(1609250..1609591) Staphylococcus aureus subsp. aureus COL 3237304 YP_186415.1 CDS SACOL1575 NC_002951.2 1609647 1610237 R hypothetical protein complement(1609647..1610237) Staphylococcus aureus subsp. aureus COL 3237690 YP_186416.1 CDS SACOL1576 NC_002951.2 1610244 1611290 R identified by similarity to EGAD:23152; match to protein family HMM PF05257; traG protein complement(1610244..1611290) Staphylococcus aureus subsp. aureus COL 3237681 YP_186417.1 CDS SACOL1577 NC_002951.2 1611280 1613127 R identified by similarity to EGAD:108524; hypothetical protein complement(1611280..1613127) Staphylococcus aureus subsp. aureus COL 3237668 YP_186418.1 CDS SACOL1578 NC_002951.2 1613132 1614490 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(1613132..1614490) Staphylococcus aureus subsp. aureus COL 3237610 YP_186419.1 CDS SACOL1579 NC_002951.2 1614544 1617039 R identified by similarity to EGAD:108522; hypothetical protein complement(1614544..1617039) Staphylococcus aureus subsp. aureus COL 3236299 YP_186420.1 CDS SACOL1580 NC_002951.2 1617074 1617457 R hypothetical protein complement(1617074..1617457) Staphylococcus aureus subsp. aureus COL 3236084 YP_186421.1 CDS SACOL1581 NC_002951.2 1617469 1617729 R identified by similarity to EGAD:108519; hypothetical protein complement(1617469..1617729) Staphylococcus aureus subsp. aureus COL 3237607 YP_186422.1 CDS SACOL1582 NC_002951.2 1617734 1618789 R identified by similarity to GP:1881301; hypothetical protein complement(1617734..1618789) Staphylococcus aureus subsp. aureus COL 3237978 YP_186423.1 CDS SACOL1583 NC_002951.2 1618850 1619941 R identified by similarity to EGAD:108511; match to protein family HMM PF02486; replication initiation factor family protein complement(1618850..1619941) Staphylococcus aureus subsp. aureus COL 3238227 YP_186424.1 CDS SACOL1584 NC_002951.2 1620116 1620418 R hypothetical protein complement(1620116..1620418) Staphylococcus aureus subsp. aureus COL 3238228 YP_186425.1 CDS SACOL1585 NC_002951.2 1620432 1620752 R identified by similarity to EGAD:108509; hypothetical protein complement(1620432..1620752) Staphylococcus aureus subsp. aureus COL 3238534 YP_186426.1 CDS SACOL1586 NC_002951.2 1620903 1621187 R hypothetical protein complement(1620903..1621187) Staphylococcus aureus subsp. aureus COL 3238535 YP_186427.1 CDS efp NC_002951.2 1621582 1622139 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1621582..1622139) Staphylococcus aureus subsp. aureus COL 3238536 YP_186428.1 CDS SACOL1588 NC_002951.2 1622165 1623226 R identified by similarity to GP:3372642; match to protein family HMM PF00557; proline dipeptidase complement(1622165..1623226) Staphylococcus aureus subsp. aureus COL 3238537 YP_186429.1 CDS SACOL1589 NC_002951.2 1623331 1623912 D identified by similarity to GP:6606214; hypothetical protein 1623331..1623912 Staphylococcus aureus subsp. aureus COL 3238538 YP_186430.1 CDS SACOL1590 NC_002951.2 1623926 1624144 D identified by similarity to GB:AAO04815.1; hypothetical protein 1623926..1624144 Staphylococcus aureus subsp. aureus COL 3238539 YP_186431.1 CDS SACOL1591 NC_002951.2 1624208 1625038 R identified by match to protein family HMM PF03099; lipoate-protein ligase A family protein complement(1624208..1625038) Staphylococcus aureus subsp. aureus COL 3238023 YP_186432.1 CDS SACOL1592 NC_002951.2 1625196 1625582 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 1625196..1625582 Staphylococcus aureus subsp. aureus COL 3238024 YP_186433.1 CDS SACOL1593 NC_002951.2 1625947 1627419 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(1625947..1627419) Staphylococcus aureus subsp. aureus COL 3238025 YP_186434.1 CDS SACOL1594 NC_002951.2 1627412 1628758 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(1627412..1628758) Staphylococcus aureus subsp. aureus COL 3238026 YP_186435.1 CDS gcvT NC_002951.2 1628778 1629869 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1628778..1629869) Staphylococcus aureus subsp. aureus COL 3238027 YP_186436.1 CDS aroK NC_002951.2 1630028 1630552 R identified by similarity to EGAD:29699; match to protein family HMM PF01202; shikimate kinase complement(1630028..1630552) Staphylococcus aureus subsp. aureus COL 3238028 YP_186437.1 CDS SACOL1597 NC_002951.2 1630785 1631282 R hypothetical protein complement(1630785..1631282) Staphylococcus aureus subsp. aureus COL 3236386 YP_186438.1 CDS SACOL1598 NC_002951.2 1631486 1631932 R hypothetical protein complement(1631486..1631932) Staphylococcus aureus subsp. aureus COL 3236387 YP_186439.1 CDS comGC NC_002951.2 1631910 1632221 R identified by similarity to EGAD:18290; comG operon protein 3 precursor complement(1631910..1632221) Staphylococcus aureus subsp. aureus COL 3236388 YP_186440.1 CDS SACOL1600 NC_002951.2 1632235 1633305 R identified by similarity to EGAD:21818; match to protein family HMM PF00482; competence protein ComGB complement(1632235..1633305) Staphylococcus aureus subsp. aureus COL 3236389 YP_186441.1 CDS SACOL1601 NC_002951.2 1633277 1634251 R identified by similarity to EGAD:12231; match to protein family HMM PF00437; competence protein comGA complement(1633277..1634251) Staphylococcus aureus subsp. aureus COL 3236390 YP_186442.1 CDS SACOL1602 NC_002951.2 1634303 1634926 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1634303..1634926) Staphylococcus aureus subsp. aureus COL 3236391 YP_186443.1 CDS SACOL1603 NC_002951.2 1634923 1635252 R identified by similarity to EGAD:36859; match to protein family HMM PF01910; match to protein family HMM TIGR00106; hypothetical protein complement(1634923..1635252) Staphylococcus aureus subsp. aureus COL 3236609 YP_186444.1 CDS glk NC_002951.2 1635252 1636238 R identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase complement(1635252..1636238) Staphylococcus aureus subsp. aureus COL 3236610 YP_186445.1 CDS SACOL1605 NC_002951.2 1636235 1636438 R identified by similarity to EGAD:45836; match to protein family HMM PF06014; hypothetical protein complement(1636235..1636438) Staphylococcus aureus subsp. aureus COL 3236611 YP_186446.1 CDS SACOL1606 NC_002951.2 1636419 1637882 R identified by match to protein family HMM PF01694; rhomboid family protein complement(1636419..1637882) Staphylococcus aureus subsp. aureus COL 3236612 YP_186447.1 CDS SACOL1607 NC_002951.2 1637894 1638433 R identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase complement(1637894..1638433) Staphylococcus aureus subsp. aureus COL 3236613 YP_186448.1 CDS rpmG NC_002951.2 1638642 1638791 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1638642..1638791) Staphylococcus aureus subsp. aureus COL 3236614 YP_186449.1 CDS pbp3 NC_002951.2 1638904 1640979 R identified by similarity to OMNI:SA1609; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3 complement(1638904..1640979) Staphylococcus aureus subsp. aureus COL 3236573 YP_186450.1 CDS sodA2 NC_002951.2 1641100 1641699 R identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase complement(1641100..1641699) Staphylococcus aureus subsp. aureus COL 3236574 YP_186451.1 CDS SACOL1611 NC_002951.2 1641975 1642385 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1641975..1642385) Staphylococcus aureus subsp. aureus COL 3236575 YP_186452.1 CDS SACOL1612 NC_002951.2 1642372 1643235 R identified by match to protein family HMM PF00950; ABC transporter permease complement(1642372..1643235) Staphylococcus aureus subsp. aureus COL 3236576 YP_186453.1 CDS SACOL1613 NC_002951.2 1643277 1644062 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1643277..1644062) Staphylococcus aureus subsp. aureus COL 3236577 YP_186454.1 CDS nfo NC_002951.2 1644188 1645078 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1644188..1645078) Staphylococcus aureus subsp. aureus COL 3236578 YP_186455.1 CDS SACOL1615 NC_002951.2 1645088 1646434 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(1645088..1646434) Staphylococcus aureus subsp. aureus COL 3236615 YP_186456.1 CDS SACOL1616 NC_002951.2 1646548 1647648 R identified by similarity to OMNI:NTL01BH1383; match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1646548..1647648) Staphylococcus aureus subsp. aureus COL 3236616 YP_186457.1 CDS SACOL1617 NC_002951.2 1647651 1648328 R identified by similarity to OMNI:NTL01LL1087; match to protein family HMM PF04816; hypothetical protein complement(1647651..1648328) Staphylococcus aureus subsp. aureus COL 3236617 YP_186458.1 CDS rpoD NC_002951.2 1648459 1649565 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(1648459..1649565) Staphylococcus aureus subsp. aureus COL 3236618 YP_186459.1 CDS dnaG NC_002951.2 1649789 1651588 R identified by similarity to EGAD:32007; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase complement(1649789..1651588) Staphylococcus aureus subsp. aureus COL 3236619 YP_186460.1 CDS SACOL1620 NC_002951.2 1651649 1652467 R identified by similarity to OMNI:NTL01BH1376; match to protein family HMM PF03618; hypothetical protein complement(1651649..1652467) Staphylococcus aureus subsp. aureus COL 3238295 YP_186461.1 CDS SACOL1621 NC_002951.2 1652478 1653017 R identified by match to protein family HMM PF00571; hypothetical protein complement(1652478..1653017) Staphylococcus aureus subsp. aureus COL 3238296 YP_186462.1 CDS glyS NC_002951.2 1653436 1654827 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1653436..1654827 Staphylococcus aureus subsp. aureus COL 3238297 YP_186463.1 CDS SACOL1623 NC_002951.2 1654977 1655729 R identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; RecO family DNA repair protein complement(1654977..1655729) Staphylococcus aureus subsp. aureus COL 3238298 YP_186464.1 CDS era NC_002951.2 1655751 1656650 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1655751..1656650) Staphylococcus aureus subsp. aureus COL 3238299 YP_186465.1 CDS cdd NC_002951.2 1656651 1657055 R identified by similarity to EGAD:8728; match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase complement(1656651..1657055) Staphylococcus aureus subsp. aureus COL 3238300 YP_186466.1 CDS dgkA NC_002951.2 1657066 1657410 R identified by similarity to EGAD:11045; match to protein family HMM PF01219; diacylglycerol kinase complement(1657066..1657410) Staphylococcus aureus subsp. aureus COL 3238273 YP_186467.1 CDS SACOL1627 NC_002951.2 1657413 1657880 R identified by similarity to EGAD:109021; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(1657413..1657880) Staphylococcus aureus subsp. aureus COL 3238274 YP_186468.1 CDS SACOL1628 NC_002951.2 1657881 1658801 R identified by match to protein family HMM PF00013; match to protein family HMM PF02562; PhoH family protein complement(1657881..1658801) Staphylococcus aureus subsp. aureus COL 3238275 YP_186469.1 CDS SACOL1629 NC_002951.2 1659132 1659830 R identified by similarity to GB:AAO04858.1; hypothetical protein complement(1659132..1659830) Staphylococcus aureus subsp. aureus COL 3238276 YP_186470.1 CDS SACOL1630 NC_002951.2 1659847 1660836 R identified by similarity to EGAD:45808; match to protein family HMM PF07251; hypothetical protein complement(1659847..1660836) Staphylococcus aureus subsp. aureus COL 3238277 YP_186471.1 CDS SACOL1631 NC_002951.2 1660854 1661561 R identified by similarity to EGAD:45807; hypothetical protein complement(1660854..1661561) Staphylococcus aureus subsp. aureus COL 3238278 YP_186472.1 CDS rpsU NC_002951.2 1661781 1661957 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1661781..1661957) Staphylococcus aureus subsp. aureus COL 3238013 YP_186473.1 CDS SACOL1633 NC_002951.2 1662250 1663596 R identified by similarity to OMNI:NTL01BH1354; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein complement(1662250..1663596) Staphylococcus aureus subsp. aureus COL 3238014 YP_186474.1 CDS SACOL1634 NC_002951.2 1663603 1664355 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1663603..1664355) Staphylococcus aureus subsp. aureus COL 3238015 YP_186475.1 CDS prmA NC_002951.2 1664357 1665295 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(1664357..1665295) Staphylococcus aureus subsp. aureus COL 3238016 YP_186476.1 CDS dnaJ NC_002951.2 1665299 1666438 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1665299..1666438) Staphylococcus aureus subsp. aureus COL 3238017 YP_186477.1 CDS dnaK NC_002951.2 1666574 1668406 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1666574..1668406) Staphylococcus aureus subsp. aureus COL 3238018 YP_186478.1 CDS grpE NC_002951.2 1668475 1669101 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1668475..1669101) Staphylococcus aureus subsp. aureus COL 3238471 YP_186479.1 CDS hrcA NC_002951.2 1669133 1670110 R identified by similarity to EGAD:15810; match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA complement(1669133..1670110) Staphylococcus aureus subsp. aureus COL 3238472 YP_186480.1 CDS SACOL1640 NC_002951.2 1670210 1671367 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1670210..1671367) Staphylococcus aureus subsp. aureus COL 3238473 YP_186481.1 CDS lepA NC_002951.2 1671897 1673720 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1671897..1673720) Staphylococcus aureus subsp. aureus COL 3238474 YP_186482.1 CDS rpsT NC_002951.2 1674066 1674317 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1674066..1674317 Staphylococcus aureus subsp. aureus COL 3238475 YP_186483.1 CDS holA NC_002951.2 1674362 1675336 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1674362..1675336) Staphylococcus aureus subsp. aureus COL 3238455 YP_186484.1 CDS SACOL1644 NC_002951.2 1675393 1677540 R identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; competence protein ComEC/Rec2 complement(1675393..1677540) Staphylococcus aureus subsp. aureus COL 3238456 YP_186485.1 CDS SACOL1645 NC_002951.2 1677599 1678030 R identified by similarity to EGAD:23914; match to protein family HMM PF00383; comE operon protein 2 complement(1677599..1678030) Staphylococcus aureus subsp. aureus COL 3238457 YP_186486.1 CDS comEA NC_002951.2 1678152 1678838 R identified by similarity to OMNI:NTL01SA1471; match to protein family HMM PF00633; match to protein family HMM TIGR00426; comE operon protein 1-like protein complement(1678152..1678838) Staphylococcus aureus subsp. aureus COL 3238458 YP_186487.1 CDS SACOL1647 NC_002951.2 1678878 1679594 R identified by similarity to OMNI:NTL01BH1333; hypothetical protein complement(1678878..1679594) Staphylococcus aureus subsp. aureus COL 3238459 YP_186488.1 CDS SACOL1648 NC_002951.2 1679597 1679950 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein complement(1679597..1679950) Staphylococcus aureus subsp. aureus COL 3238460 YP_186489.1 CDS SACOL1649 NC_002951.2 1679951 1680535 R identified by similarity to OMNI:NTL01BH1330; match to protein family HMM PF01966; match to protein family HMM TIGR00488; hypothetical protein complement(1679951..1680535) Staphylococcus aureus subsp. aureus COL 3236246 YP_186490.1 CDS nadD NC_002951.2 1680525 1681094 R identified by similarity to OMNI:NTL01SPL0234; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1680525..1681094) Staphylococcus aureus subsp. aureus COL 3236247 YP_186491.1 CDS SACOL1651 NC_002951.2 1681097 1681387 R identified by similarity to EGAD:45796; match to protein family HMM PF01985; match to protein family HMM TIGR00253; hypothetical protein complement(1681097..1681387) Staphylococcus aureus subsp. aureus COL 3236248 YP_186492.1 CDS aroE NC_002951.2 1681391 1682197 R identified by similarity to EGAD:45757; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase complement(1681391..1682197) Staphylococcus aureus subsp. aureus COL 3236249 YP_186493.1 CDS SACOL1653 NC_002951.2 1682211 1683311 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1682211..1683311) Staphylococcus aureus subsp. aureus COL 3236250 YP_186494.1 CDS SACOL1654 NC_002951.2 1683312 1683839 R identified by similarity to OMNI:NTL01BS02561; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD superfamily hydrolase complement(1683312..1683839) Staphylococcus aureus subsp. aureus COL 3236251 YP_186495.1 CDS mtn NC_002951.2 1683859 1684545 R identified by similarity to EGAD:16140; match to protein family HMM PF01048; match to protein family HMM TIGR01704; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1683859..1684545) Staphylococcus aureus subsp. aureus COL 3236252 YP_186496.1 CDS SACOL1656 NC_002951.2 1684859 1685128 D hypothetical protein 1684859..1685128 Staphylococcus aureus subsp. aureus COL 3236438 YP_186497.1 CDS SACOL1657 NC_002951.2 1685330 1686034 R identified by match to protein family HMM PF01123; match to protein family HMM PF02876; enterotoxin type A complement(1685330..1686034) Staphylococcus aureus subsp. aureus COL 3236439 YP_186498.1 CDS SACOL1658 NC_002951.2 1686496 1687716 R hypothetical protein complement(1686496..1687716) Staphylococcus aureus subsp. aureus COL 3236440 YP_186499.1 CDS SACOL1659 NC_002951.2 1688005 1689234 R identified by similarity to GP:10174438; similarity to OMNI:NTL01BH1823; hypothetical protein complement(1688005..1689234) Staphylococcus aureus subsp. aureus COL 3236532 YP_186500.1 CDS SACOL1660 NC_002951.2 1689247 1689999 R identified by match to protein family HMM PF03746; LamB/YcsF family protein complement(1689247..1689999) Staphylococcus aureus subsp. aureus COL 3236533 YP_186501.1 CDS SACOL1661 NC_002951.2 1689999 1691360 R identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; acetyl-CoA carboxylase, biotin carboxylase complement(1689999..1691360) Staphylococcus aureus subsp. aureus COL 3236534 YP_186502.1 CDS SACOL1662 NC_002951.2 1691374 1691823 R identified by similarity to SP:P49786; match to protein family HMM PF00364; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1691374..1691823) Staphylococcus aureus subsp. aureus COL 3236725 YP_186503.1 CDS SACOL1663 NC_002951.2 1691825 1692835 R identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; hypothetical protein complement(1691825..1692835) Staphylococcus aureus subsp. aureus COL 3236726 YP_186504.1 CDS SACOL1664 NC_002951.2 1692825 1693559 R identified by similarity to OMNI:NTL01CJ01472; match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein complement(1692825..1693559) Staphylococcus aureus subsp. aureus COL 3236727 YP_186505.1 CDS greA NC_002951.2 1693885 1694361 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1693885..1694361) Staphylococcus aureus subsp. aureus COL 3236728 YP_186506.1 CDS udk NC_002951.2 1694389 1695012 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1694389..1695012) Staphylococcus aureus subsp. aureus COL 3236729 YP_186507.1 CDS SACOL1667 NC_002951.2 1695012 1696280 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1695012..1696280) Staphylococcus aureus subsp. aureus COL 3237957 YP_186508.1 CDS SACOL1668 NC_002951.2 1696292 1697215 R identified by match to protein family HMM PF01136; U32 family peptidase complement(1696292..1697215) Staphylococcus aureus subsp. aureus COL 3237600 YP_186509.1 CDS SACOL1669 NC_002951.2 1697218 1697856 R identified by match to protein family HMM PF01596; O-methyltransferase complement(1697218..1697856) Staphylococcus aureus subsp. aureus COL 3237550 YP_186510.1 CDS SACOL1670 NC_002951.2 1698141 1698449 R identified by similarity to OMNI:EF1204; match to protein family HMM PF06949; hypothetical protein complement(1698141..1698449) Staphylococcus aureus subsp. aureus COL 3237578 YP_186511.1 CDS SACOL1671 NC_002951.2 1698464 1698892 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1698464..1698892) Staphylococcus aureus subsp. aureus COL 3236115 YP_186512.1 CDS SACOL1672 NC_002951.2 1698896 1699156 R identified by similarity to OMNI:NTL01BH1271; match to protein family HMM PF06135; hypothetical protein complement(1698896..1699156) Staphylococcus aureus subsp. aureus COL 3237840 YP_186513.1 CDS alaS NC_002951.2 1699219 1701849 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1699219..1701849) Staphylococcus aureus subsp. aureus COL 3237916 YP_186514.1 CDS SACOL1674 NC_002951.2 1702192 1704669 R identified by match to protein family HMM TIGR01448; recombinase D complement(1702192..1704669) Staphylococcus aureus subsp. aureus COL 3237788 YP_186515.1 CDS SACOL1675 NC_002951.2 1704671 1705339 R identified by similarity to EGAD:107352; match to protein family HMM PF00515; TPR domain-containing protein complement(1704671..1705339) Staphylococcus aureus subsp. aureus COL 3237637 YP_186516.1 CDS mnmA NC_002951.2 1705801 1706919 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1705801..1706919) Staphylococcus aureus subsp. aureus COL 3237621 YP_186517.1 CDS SACOL1677 NC_002951.2 1706920 1708062 R identified by match to protein family HMM PF00266; class V aminotransferase complement(1706920..1708062) Staphylococcus aureus subsp. aureus COL 3237374 YP_186518.1 CDS SACOL1678 NC_002951.2 1708374 1709387 D identified by match to protein family HMM PF00296; luciferase 1708374..1709387 Staphylococcus aureus subsp. aureus COL 3237939 YP_186519.1 CDS SACOL1679 NC_002951.2 1709624 1709770 R identified by similarity to GB:AAO04906.1; hypothetical protein complement(1709624..1709770) Staphylococcus aureus subsp. aureus COL 3237813 YP_186520.1 CDS SACOL1680 NC_002951.2 1709810 1709992 R identified by similarity to GP:13622388; match to protein family HMM PF05532; hypothetical protein complement(1709810..1709992) Staphylococcus aureus subsp. aureus COL 3238476 YP_186521.1 CDS SACOL1681 NC_002951.2 1710092 1710514 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(1710092..1710514) Staphylococcus aureus subsp. aureus COL 3238321 YP_186522.1 CDS SACOL1682 NC_002951.2 1710599 1711873 D identified by match to protein family HMM PF00004; recombination factor protein RarA 1710599..1711873 Staphylococcus aureus subsp. aureus COL 3238320 YP_186523.1 CDS SACOL1683 NC_002951.2 1712034 1712807 R identified by match to protein family HMM PF00899; hypothetical protein complement(1712034..1712807) Staphylococcus aureus subsp. aureus COL 3238611 YP_186524.1 CDS aspS NC_002951.2 1713268 1715034 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1713268..1715034) Staphylococcus aureus subsp. aureus COL 3238249 YP_186525.1 CDS hisS NC_002951.2 1715050 1716312 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1715050..1716312) Staphylococcus aureus subsp. aureus COL 3238238 YP_186526.1 CDS SACOL1687 NC_002951.2 1716773 1717648 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1716773..1717648) Staphylococcus aureus subsp. aureus COL 3238432 YP_186527.1 CDS SACOL1688 NC_002951.2 1717645 1718097 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1717645..1718097) Staphylococcus aureus subsp. aureus COL 3238135 YP_186528.1 CDS relA2 NC_002951.2 1718109 1720298 R identified by similarity to EGAD:107375; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase complement(1718109..1720298) Staphylococcus aureus subsp. aureus COL 3238211 YP_186529.1 CDS apt NC_002951.2 1720726 1721244 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1720726..1721244) Staphylococcus aureus subsp. aureus COL 3238414 YP_186530.1 CDS recJ NC_002951.2 1721266 1723539 R identified by similarity to EGAD:24228; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(1721266..1723539) Staphylococcus aureus subsp. aureus COL 3238200 YP_186531.1 CDS SACOL1692 NC_002951.2 1723742 1726021 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(1723742..1726021) Staphylococcus aureus subsp. aureus COL 3238037 YP_186532.1 CDS yajC NC_002951.2 1726296 1726556 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase, YajC subunit complement(1726296..1726556) Staphylococcus aureus subsp. aureus COL 3238482 YP_186533.1 CDS tgt NC_002951.2 1726575 1727714 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1726575..1727714) Staphylococcus aureus subsp. aureus COL 3238043 YP_186534.1 CDS queA NC_002951.2 1727737 1728762 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1727737..1728762) Staphylococcus aureus subsp. aureus COL 3238239 YP_186535.1 CDS ruvB NC_002951.2 1728764 1729768 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1728764..1729768) Staphylococcus aureus subsp. aureus COL 3238142 YP_186536.1 CDS ruvA NC_002951.2 1729800 1730402 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1729800..1730402) Staphylococcus aureus subsp. aureus COL 3238120 YP_186537.1 CDS SACOL1698 NC_002951.2 1730416 1730874 R identified by match to protein family HMM PF01842; hypothetical protein complement(1730416..1730874) Staphylococcus aureus subsp. aureus COL 3238485 YP_186538.1 CDS obgE NC_002951.2 1730884 1732176 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1730884..1732176) Staphylococcus aureus subsp. aureus COL 3238040 YP_186539.1 CDS rpmA NC_002951.2 1732531 1732815 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1732531..1732815) Staphylococcus aureus subsp. aureus COL 3238006 YP_186540.1 CDS SACOL1701 NC_002951.2 1732827 1733147 R identified by similarity to EGAD:7018; match to protein family HMM PF04327; hypothetical protein complement(1732827..1733147) Staphylococcus aureus subsp. aureus COL 3238602 YP_186541.1 CDS rplU NC_002951.2 1733153 1733461 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(1733153..1733461) Staphylococcus aureus subsp. aureus COL 3238052 YP_186542.1 CDS SACOL1703 NC_002951.2 1733628 1734158 R identified by similarity to EGAD:24238; match to protein family HMM PF04093; rod shape-determining protein MreD complement(1733628..1734158) Staphylococcus aureus subsp. aureus COL 3238463 YP_186543.1 CDS mreC NC_002951.2 1734158 1735000 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1734158..1735000) Staphylococcus aureus subsp. aureus COL 3238244 YP_186544.1 CDS SACOL1705 NC_002951.2 1735393 1735866 R hypothetical protein complement(1735393..1735866) Staphylococcus aureus subsp. aureus COL 3238504 YP_186545.1 CDS SACOL1706 NC_002951.2 1736340 1736624 R hypothetical protein complement(1736340..1736624) Staphylococcus aureus subsp. aureus COL 3238572 YP_186546.1 CDS radC NC_002951.2 1736692 1737378 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1736692..1737378) Staphylococcus aureus subsp. aureus COL 3238129 YP_186547.1 CDS SACOL1708 NC_002951.2 1737375 1738082 R identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type III leader peptidase complement(1737375..1738082) Staphylococcus aureus subsp. aureus COL 3238643 YP_186548.1 CDS folC NC_002951.2 1738352 1739623 R identified by similarity to EGAD:12279; similarity to EGAD:42028; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase/dihydrofolate synthase complement(1738352..1739623) Staphylococcus aureus subsp. aureus COL 3238701 YP_186549.1 CDS valS NC_002951.2 1739636 1742266 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1739636..1742266) Staphylococcus aureus subsp. aureus COL 3238312 YP_186550.1 CDS SACOL1711 NC_002951.2 1742669 1743229 D identified by similarity to EGAD:6433; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase 1742669..1743229 Staphylococcus aureus subsp. aureus COL 3238360 YP_186551.1 CDS SACOL1712 NC_002951.2 1743452 1744525 R identified by match to protein family HMM PF05145; abrB protein complement(1743452..1744525) Staphylococcus aureus subsp. aureus COL 3238556 YP_186552.1 CDS hemL1 NC_002951.2 1744721 1746007 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1744721..1746007) Staphylococcus aureus subsp. aureus COL 3238620 YP_186553.1 CDS hemB NC_002951.2 1746055 1747029 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1746055..1747029) Staphylococcus aureus subsp. aureus COL 3238571 YP_186554.1 CDS hemD NC_002951.2 1747032 1747700 R identified by match to protein family HMM PF02602; uroporphyrinogen III synthase complement(1747032..1747700) Staphylococcus aureus subsp. aureus COL 3238340 YP_186555.1 CDS hemC NC_002951.2 1747722 1748648 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1747722..1748648) Staphylococcus aureus subsp. aureus COL 3238223 YP_186556.1 CDS SACOL1718 NC_002951.2 1748690 1749505 R identified by similarity to EGAD:15411; match to protein family HMM PF01578; hemX protein complement(1748690..1749505) Staphylococcus aureus subsp. aureus COL 3238353 YP_186557.1 CDS hemA NC_002951.2 1749527 1750873 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1749527..1750873) Staphylococcus aureus subsp. aureus COL 3236739 YP_186558.1 CDS engB NC_002951.2 1751090 1751680 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1751090..1751680) Staphylococcus aureus subsp. aureus COL 3238352 YP_186559.1 CDS clpX NC_002951.2 1751834 1753096 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1751834..1753096) Staphylococcus aureus subsp. aureus COL 3238124 YP_186560.1 CDS tig NC_002951.2 1753247 1754548 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1753247..1754548) Staphylococcus aureus subsp. aureus COL 3238349 YP_186561.1 CDS SACOL1723 NC_002951.2 1754711 1755640 R identified by similarity to GB:AAO04950.1; hypothetical protein complement(1754711..1755640) Staphylococcus aureus subsp. aureus COL 3238351 YP_186562.1 CDS SACOL1724 NC_002951.2 1755659 1756267 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(1755659..1756267) Staphylococcus aureus subsp. aureus COL 3238264 YP_186563.1 CDS rplT NC_002951.2 1756409 1756765 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1756409..1756765) Staphylococcus aureus subsp. aureus COL 3236569 YP_186564.1 CDS rpmI NC_002951.2 1756812 1757012 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(1756812..1757012) Staphylococcus aureus subsp. aureus COL 3236392 YP_186565.1 CDS infC NC_002951.2 1757041 1757568 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1757041..1757568) Staphylococcus aureus subsp. aureus COL 3237740 YP_186566.1 CDS SACOL1728 NC_002951.2 1757797 1759290 R identified by match to protein family HMM PF00324; amino acid permease complement(1757797..1759290) Staphylococcus aureus subsp. aureus COL 3236213 YP_186567.1 CDS thrS NC_002951.2 1759716 1761653 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1759716..1761653) Staphylococcus aureus subsp. aureus COL 3236393 YP_186568.1 CDS dnaI NC_002951.2 1762066 1762986 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(1762066..1762986) Staphylococcus aureus subsp. aureus COL 3238339 YP_186569.1 CDS SACOL1732 NC_002951.2 1762986 1764386 R identified by similarity to EGAD:12808; match to protein family HMM PF07261; replication initiation and membrane attachment protein complement(1762986..1764386) Staphylococcus aureus subsp. aureus COL 3238557 YP_186570.1 CDS nrdR NC_002951.2 1764387 1764857 R identified by similarity to OMNI:NTL01BH3149; match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(1764387..1764857) Staphylococcus aureus subsp. aureus COL 3238711 YP_186571.1 CDS gapA2 NC_002951.2 1765067 1766092 R identified by similarity to EGAD:107759; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde 3-phosphate dehydrogenase 2 complement(1765067..1766092) Staphylococcus aureus subsp. aureus COL 3238151 YP_186572.1 CDS coaE NC_002951.2 1766262 1766885 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1766262..1766885) Staphylococcus aureus subsp. aureus COL 3238585 YP_186573.1 CDS fpg NC_002951.2 1766901 1767773 R In the Gram-positive bacteria, the preferred gene symbol is fpg. In other prokaryotes, the gene symbol is mutM.identified by similarity to EGAD:8852; match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase complement(1766901..1767773) Staphylococcus aureus subsp. aureus COL 3238185 YP_186574.1 CDS polA NC_002951.2 1767789 1770419 R identified by similarity to EGAD:108026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(1767789..1770419) Staphylococcus aureus subsp. aureus COL 3238703 YP_186575.1 CDS SACOL1738 NC_002951.2 1770713 1772200 R hypothetical protein complement(1770713..1772200) Staphylococcus aureus subsp. aureus COL 3236400 YP_186576.1 CDS SACOL1739 NC_002951.2 1772699 1774363 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase PhoR complement(1772699..1774363) Staphylococcus aureus subsp. aureus COL 3236401 YP_186577.1 CDS phoP NC_002951.2 1774360 1775064 R identified by similarity to EGAD:18490; match to protein family HMM PF00072; match to protein family HMM PF00486; alkaline phosphatase synthesis transcriptional regulatory protein complement(1774360..1775064) Staphylococcus aureus subsp. aureus COL 3237708 YP_186578.1 CDS icd NC_002951.2 1775454 1776722 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1775454..1776722) Staphylococcus aureus subsp. aureus COL 3236289 YP_186579.1 CDS gltA NC_002951.2 1776771 1777892 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1776771..1777892) Staphylococcus aureus subsp. aureus COL 3238105 YP_186580.1 CDS SACOL1743 NC_002951.2 1778240 1779601 D identified by match to protein family HMM PF00324; amino acid permease 1778240..1779601 Staphylococcus aureus subsp. aureus COL 3238324 YP_186581.1 CDS pyk NC_002951.2 1781926 1783683 R identified by similarity to EGAD:108035; match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(1781926..1783683) Staphylococcus aureus subsp. aureus COL 3238347 YP_186582.1 CDS pfkA NC_002951.2 1783705 1784673 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1783705..1784673) Staphylococcus aureus subsp. aureus COL 3238326 YP_186583.1 CDS accA NC_002951.2 1784942 1785886 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1784942..1785886) Staphylococcus aureus subsp. aureus COL 3238265 YP_186584.1 CDS accD NC_002951.2 1785886 1786743 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(1785886..1786743) Staphylococcus aureus subsp. aureus COL 3238232 YP_186585.1 CDS SACOL1749 NC_002951.2 1786938 1788167 R identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme complement(1786938..1788167) Staphylococcus aureus subsp. aureus COL 3238131 YP_186586.1 CDS dnaE NC_002951.2 1788617 1791814 R identified by similarity to EGAD:108043; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha complement(1788617..1791814) Staphylococcus aureus subsp. aureus COL 3238132 YP_186587.1 CDS SACOL1751 NC_002951.2 1791835 1792776 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; hypothetical protein complement(1791835..1792776) Staphylococcus aureus subsp. aureus COL 3238462 YP_186588.1 CDS SACOL1752 NC_002951.2 1793037 1794335 R identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085; hypothetical protein complement(1793037..1794335) Staphylococcus aureus subsp. aureus COL 3236730 YP_186589.1 CDS SACOL1753 NC_002951.2 1794540 1794953 D identified by match to protein family HMM PF00582; universal stress protein 1794540..1794953 Staphylococcus aureus subsp. aureus COL 3235990 YP_186590.1 CDS pepQ NC_002951.2 1796121 1797176 D identified by similarity to EGAD:30261; match to protein family HMM PF00557; proline dipeptidase 1796121..1797176 Staphylococcus aureus subsp. aureus COL 3235992 YP_186591.1 CDS SACOL1757 NC_002951.2 1797270 1797368 R hypothetical protein complement(1797270..1797368) Staphylococcus aureus subsp. aureus COL 3235993 YP_186592.1 CDS ald2 NC_002951.2 1797492 1798610 R identified by similarity to EGAD:15508; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(1797492..1798610) Staphylococcus aureus subsp. aureus COL 3235994 YP_186593.1 CDS SACOL1759 NC_002951.2 1798751 1799251 D identified by match to protein family HMM PF00582; universal stress protein 1798751..1799251 Staphylococcus aureus subsp. aureus COL 3235995 YP_186594.1 CDS ackA NC_002951.2 1799497 1800699 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1799497..1800699) Staphylococcus aureus subsp. aureus COL 3236755 YP_186595.1 CDS SACOL1761 NC_002951.2 1800787 1801734 R identified by similarity to EGAD:11836; hypothetical protein complement(1800787..1801734) Staphylococcus aureus subsp. aureus COL 3236756 YP_186596.1 CDS tpx NC_002951.2 1801857 1802351 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(1801857..1802351) Staphylococcus aureus subsp. aureus COL 3236757 YP_186597.1 CDS SACOL1763 NC_002951.2 1802449 1803219 R identified by similarity to OMNI:NTL01BH2125; match to protein family HMM PF01925; hypothetical protein complement(1802449..1803219) Staphylococcus aureus subsp. aureus COL 3236758 YP_186598.1 CDS thiI NC_002951.2 1803263 1804486 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1803263..1804486) Staphylococcus aureus subsp. aureus COL 3236759 YP_186599.1 CDS SACOL1765 NC_002951.2 1804486 1805625 R identified by match to protein family HMM PF00266; class V aminotransferase complement(1804486..1805625) Staphylococcus aureus subsp. aureus COL 3236760 YP_186600.1 CDS SACOL1766 NC_002951.2 1805783 1805923 D hypothetical protein 1805783..1805923 Staphylococcus aureus subsp. aureus COL 3236377 YP_186601.1 CDS SACOL1767 NC_002951.2 1805997 1807691 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1805997..1807691) Staphylococcus aureus subsp. aureus COL 3236378 YP_186602.1 CDS SACOL1768 NC_002951.2 1807828 1808292 D identified by match to protein family HMM PF01590; GAF domain-containing protein 1807828..1808292 Staphylococcus aureus subsp. aureus COL 3236379 YP_186603.1 CDS rpsD NC_002951.2 1808536 1809138 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1808536..1809138 Staphylococcus aureus subsp. aureus COL 3236380 YP_186604.1 CDS SACOL1770 NC_002951.2 1809354 1810097 R identified by similarity to EGAD:9350; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(1809354..1810097) Staphylococcus aureus subsp. aureus COL 3236381 YP_186605.1 CDS SACOL1771 NC_002951.2 1810177 1810623 D identified by match to protein family HMM PF02566; OsmC/Ohr family protein 1810177..1810623 Staphylococcus aureus subsp. aureus COL 3236382 YP_186606.1 CDS SACOL1772 NC_002951.2 1810737 1811897 D identified by match to protein family HMM PF00266; class V aminotransferase 1810737..1811897 Staphylococcus aureus subsp. aureus COL 3236383 YP_186607.1 CDS serA NC_002951.2 1811884 1813488 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1811884..1813488 Staphylococcus aureus subsp. aureus COL 3236384 YP_186608.1 CDS SACOL1774 NC_002951.2 1813638 1814768 R HAD superfamily hydrolase complement(1813638..1814768) Staphylococcus aureus subsp. aureus COL 3236588 YP_186609.1 CDS SACOL1775 NC_002951.2 1814875 1816341 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01998; PTS system, IIBC components complement(1814875..1816341) Staphylococcus aureus subsp. aureus COL 3236589 YP_186610.1 CDS SACOL1776 NC_002951.2 1816469 1817086 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1816469..1817086) Staphylococcus aureus subsp. aureus COL 3236590 YP_186611.1 CDS SACOL1777 NC_002951.2 1817258 1818532 D identified by similarity to OMNI:NTL01LL2179; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease HtrA 1817258..1818532 Staphylococcus aureus subsp. aureus COL 3236591 YP_186612.1 CDS tyrS NC_002951.2 1818626 1819888 R identified by similarity to EGAD:22377; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(1818626..1819888) Staphylococcus aureus subsp. aureus COL 3236592 YP_186613.1 CDS SACOL1779 NC_002951.2 1820270 1821175 D identified by match to protein family HMM PF00912; transglycosylase domain-containing protein 1820270..1821175 Staphylococcus aureus subsp. aureus COL 3236593 YP_186614.1 CDS SACOL1781 NC_002951.2 1821378 1824065 R identified by match to protein family HMM PF04650; match to protein family HMM PF05031; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(1821378..1824065) Staphylococcus aureus subsp. aureus COL 3236594 YP_186615.2 CDS fhs NC_002951.2 1824399 1826066 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1824399..1826066) Staphylococcus aureus subsp. aureus COL 3236749 YP_186616.1 CDS acs NC_002951.2 1826506 1828212 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(1826506..1828212) Staphylococcus aureus subsp. aureus COL 3236750 YP_186617.1 CDS acuA NC_002951.2 1828381 1829013 D identified by similarity to EGAD:23882; acetoin utilization protein AcuA 1828381..1829013 Staphylococcus aureus subsp. aureus COL 3236751 YP_186618.1 CDS acuC NC_002951.2 1829038 1830207 D identified by similarity to EGAD:19784; match to protein family HMM PF00850; acetoin utilization protein AcuC 1829038..1830207 Staphylococcus aureus subsp. aureus COL 3236752 YP_186619.1 CDS ccpA NC_002951.2 1830305 1831294 R identified by similarity to EGAD:41199; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481; catabolite control protein A complement(1830305..1831294) Staphylococcus aureus subsp. aureus COL 3236753 YP_186620.1 CDS SACOL1787 NC_002951.2 1831834 1832925 R catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase complement(1831834..1832925) Staphylococcus aureus subsp. aureus COL 3236754 YP_186621.1 CDS SACOL1788 NC_002951.2 1833625 1835142 R hypothetical protein complement(1833625..1835142) Staphylococcus aureus subsp. aureus COL 3236013 YP_186622.1 CDS SACOL1789 NC_002951.2 1835216 1835707 R identified by similarity to EGAD:30617; match to protein family HMM PF06103; hypothetical protein complement(1835216..1835707) Staphylococcus aureus subsp. aureus COL 3236014 YP_186623.1 CDS murC NC_002951.2 1835781 1837094 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1835781..1837094) Staphylococcus aureus subsp. aureus COL 3236015 YP_186624.1 CDS SACOL1791 NC_002951.2 1837118 1840942 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(1837118..1840942) Staphylococcus aureus subsp. aureus COL 3236016 YP_186625.1 CDS SACOL1792 NC_002951.2 1840963 1841559 R identified by match to protein family HMM PF01588; hypothetical protein complement(1840963..1841559) Staphylococcus aureus subsp. aureus COL 3236017 YP_186626.1 CDS SACOL1793 NC_002951.2 1841588 1842445 R identified by similarity to OMNI:NTL01BS02977; match to protein family HMM PF07285; hypothetical protein complement(1841588..1842445) Staphylococcus aureus subsp. aureus COL 3236018 YP_186627.1 CDS SACOL1794 NC_002951.2 1842545 1842856 R identified by match to protein family HMM PF00085; thioredoxin complement(1842545..1842856) Staphylococcus aureus subsp. aureus COL 3236019 YP_186628.1 CDS pepA1 NC_002951.2 1842921 1843997 R identified by similarity to EGAD:40297; match to protein family HMM PF05343; glutamyl aminopeptidase complement(1842921..1843997) Staphylococcus aureus subsp. aureus COL 3236049 YP_186629.1 CDS SACOL1796 NC_002951.2 1844084 1844395 D identified by similarity to OMNI:EF3039; match to protein family HMM PF03413; hypothetical protein 1844084..1844395 Staphylococcus aureus subsp. aureus COL 3236050 YP_186630.1 CDS SACOL1797 NC_002951.2 1844520 1845296 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1844520..1845296) Staphylococcus aureus subsp. aureus COL 3236051 YP_186631.1 CDS trmB NC_002951.2 1845832 1846476 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1845832..1846476) Staphylococcus aureus subsp. aureus COL 3236052 YP_186632.1 CDS SACOL1799 NC_002951.2 1846491 1847282 R identified by similarity to OMNI:NTL01BH3266; match to protein family HMM PF01636; hypothetical protein complement(1846491..1847282) Staphylococcus aureus subsp. aureus COL 3236053 YP_186633.1 CDS dat NC_002951.2 1847832 1848680 R identified by similarity to EGAD:38031; match to protein family HMM PF01063; match to protein family HMM TIGR01121; D-alanine aminotransferase complement(1847832..1848680) Staphylococcus aureus subsp. aureus COL 3236054 YP_186634.1 CDS SACOL1801 NC_002951.2 1848684 1850093 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1848684..1850093) Staphylococcus aureus subsp. aureus COL 3236055 YP_186635.1 CDS SACOL1802 NC_002951.2 1851013 1851435 R identified by similarity to GB:AAO05024.1; hypothetical protein complement(1851013..1851435) Staphylococcus aureus subsp. aureus COL 3236027 YP_186636.1 CDS SACOL1803 NC_002951.2 1851452 1852147 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase 1 protein complement(1851452..1852147) Staphylococcus aureus subsp. aureus COL 3236028 YP_186637.1 CDS SACOL1804 NC_002951.2 1852144 1853805 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(1852144..1853805) Staphylococcus aureus subsp. aureus COL 3236029 YP_186638.1 CDS SACOL1805 NC_002951.2 1854212 1855480 D identified by similarity to OMNI:NTL01BH3282; match to protein family HMM PF03486; match to protein family HMM TIGR00275; hypothetical protein 1854212..1855480 Staphylococcus aureus subsp. aureus COL 3236030 YP_186639.1 CDS SACOL1806 NC_002951.2 1855597 1862157 R identified by match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(1855597..1862157) Staphylococcus aureus subsp. aureus COL 3236031 YP_186640.1 CDS SACOL1807 NC_002951.2 1862483 1862794 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(1862483..1862794) Staphylococcus aureus subsp. aureus COL 3236032 YP_186641.1 CDS leuS NC_002951.2 1862816 1865233 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1862816..1865233) Staphylococcus aureus subsp. aureus COL 3236033 YP_186642.1 CDS SACOL1809 NC_002951.2 1865521 1866702 R identified by match to protein family HMM PF07690; drug transporter complement(1865521..1866702) Staphylococcus aureus subsp. aureus COL 3236034 YP_186643.1 CDS SACOL1810 NC_002951.2 1866812 1867765 D identified by similarity to EGAD:108408; match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 1866812..1867765 Staphylococcus aureus subsp. aureus COL 3236540 YP_186644.1 CDS SACOL1811 NC_002951.2 1867762 1868325 D identified by similarity to OMNI:NTL01BH3288; match to protein family HMM PF06962; hypothetical protein 1867762..1868325 Staphylococcus aureus subsp. aureus COL 3238704 YP_186645.1 CDS rot NC_002951.2 1868445 1868945 R identified by similarity to GP:6651452; match to protein family HMM TIGR01889; repressor of toxins complement(1868445..1868945) Staphylococcus aureus subsp. aureus COL 3238705 YP_186646.1 CDS SACOL1814 NC_002951.2 1870425 1871252 R identified by similarity to OMNI:NTL01BH3291; lysophospholipase complement(1870425..1871252) Staphylococcus aureus subsp. aureus COL 3236541 YP_186647.1 CDS SACOL1815 NC_002951.2 1871255 1871374 R hypothetical protein complement(1871255..1871374) Staphylococcus aureus subsp. aureus COL 3236542 YP_186648.1 CDS putA NC_002951.2 1871486 1872487 D identified by match to protein family HMM PF01619; proline dehydrogenase 1871486..1872487 Staphylococcus aureus subsp. aureus COL 3236543 YP_186649.1 CDS ribH NC_002951.2 1872609 1873073 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1872609..1873073) Staphylococcus aureus subsp. aureus COL 3236544 YP_186650.1 CDS ribBA NC_002951.2 1873086 1874267 R identified by similarity to EGAD:14797; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; riboflavin biosynthesis protein complement(1873086..1874267) Staphylococcus aureus subsp. aureus COL 3236545 YP_186651.1 CDS ribE NC_002951.2 1874278 1874910 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1874278..1874910) Staphylococcus aureus subsp. aureus COL 3236005 YP_186652.1 CDS ribD NC_002951.2 1874917 1875960 R identified by similarity to EGAD:14315; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1874917..1875960) Staphylococcus aureus subsp. aureus COL 3236006 YP_186653.1 CDS SACOL1821 NC_002951.2 1876441 1877943 R identified by similarity to GB:AAO05041.1; hypothetical protein complement(1876441..1877943) Staphylococcus aureus subsp. aureus COL 3236007 YP_186654.1 CDS arsR NC_002951.2 1878466 1878780 D identified by similarity to EGAD:10168; match to protein family HMM PF01022; arsenical resistance operon repressor 1878466..1878780 Staphylococcus aureus subsp. aureus COL 3236008 YP_186655.1 CDS arsB NC_002951.2 1878780 1880072 D identified by similarity to OMNI:NTL02EC4342; match to protein family HMM PF02040; match to protein family HMM TIGR00935; arsenical pump membrane protein 1878780..1880072 Staphylococcus aureus subsp. aureus COL 3236009 YP_186656.1 CDS arsC NC_002951.2 1880090 1880485 D catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates; arsenate reductase 1880090..1880485 Staphylococcus aureus subsp. aureus COL 3236010 YP_186657.1 CDS SACOL1825 NC_002951.2 1880780 1881634 R identified by match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase complement(1880780..1881634) Staphylococcus aureus subsp. aureus COL 3236011 YP_186658.1 CDS SACOL1826 NC_002951.2 1881910 1882134 R identified by similarity to GB:AAN32737.1; hypothetical protein complement(1881910..1882134) Staphylococcus aureus subsp. aureus COL 3235998 YP_186659.1 CDS SACOL1827 NC_002951.2 1882333 1882803 D identified by match to protein family HMM PF04542; RNA polymerase sigma-70 family protein 1882333..1882803 Staphylococcus aureus subsp. aureus COL 3235999 YP_186660.1 CDS SACOL1828 NC_002951.2 1882916 1883359 D identified by similarity to GB:AAN32735.1; hypothetical protein 1882916..1883359 Staphylococcus aureus subsp. aureus COL 3236000 YP_186661.1 CDS SACOL1829 NC_002951.2 1883346 1883789 R identified by similarity to GB:AAO05047.1; hypothetical protein complement(1883346..1883789) Staphylococcus aureus subsp. aureus COL 3236001 YP_186662.1 CDS SACOL1830 NC_002951.2 1884085 1884720 D identified by match to protein family HMM PF02517; hypothetical protein 1884085..1884720 Staphylococcus aureus subsp. aureus COL 3236002 YP_186663.1 CDS tal NC_002951.2 1885160 1885873 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(1885160..1885873) Staphylococcus aureus subsp. aureus COL 3236003 YP_186664.1 CDS crcB NC_002951.2 1886613 1887056 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1886613..1887056 Staphylococcus aureus subsp. aureus COL 3236004 YP_186665.1 CDS SACOL1833 NC_002951.2 1887053 1887406 D identified by match to protein family HMM PF02537; crcB family protein 1887053..1887406 Staphylococcus aureus subsp. aureus COL 3237535 YP_186666.1 CDS SACOL1835 NC_002951.2 1889489 1890322 R identified by match to protein family HMM PF00248; aldo/keto reductase oxidoreductase complement(1889489..1890322) Staphylococcus aureus subsp. aureus COL 3237537 YP_186667.1 CDS SACOL1836 NC_002951.2 1890534 1891442 R identified by similarity to GB:AAO05056.1; hypothetical protein complement(1890534..1891442) Staphylococcus aureus subsp. aureus COL 3237538 YP_186668.1 CDS metK NC_002951.2 1891567 1892760 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1891567..1892760) Staphylococcus aureus subsp. aureus COL 3238437 YP_186669.1 CDS pckA NC_002951.2 1893131 1894723 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1893131..1894723 Staphylococcus aureus subsp. aureus COL 3238059 YP_186670.1 CDS SACOL1839 NC_002951.2 1894859 1895344 R identified by match to protein family HMM PF01797; IS200 family transposase complement(1894859..1895344) Staphylococcus aureus subsp. aureus COL 3238253 YP_186671.1 CDS SACOL1840 NC_002951.2 1895719 1896489 R identified by similarity to EGAD:108415; hypothetical protein complement(1895719..1896489) Staphylococcus aureus subsp. aureus COL 3238600 YP_186672.1 CDS SACOL1841 NC_002951.2 1896470 1896949 R identified by match to protein family HMM PF00293; hypothetical protein complement(1896470..1896949) Staphylococcus aureus subsp. aureus COL 3236082 YP_186673.1 CDS SACOL1842 NC_002951.2 1897009 1897266 D identified by similarity to OMNI:NTL01BH2832; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 1897009..1897266 Staphylococcus aureus subsp. aureus COL 3238245 YP_186674.1 CDS SACOL1843 NC_002951.2 1897263 1898264 R identified by similarity to OMNI:NTL01SA1672; match to protein family HMM TIGR01928; o-succinylbenzoic acid (OSB) synthetase complement(1897263..1898264) Staphylococcus aureus subsp. aureus COL 3238640 YP_186675.1 CDS SACOL1844 NC_002951.2 1898269 1899747 R identified by similarity to EGAD:102199; match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase complement(1898269..1899747) Staphylococcus aureus subsp. aureus COL 3237284 YP_186676.1 CDS SACOL1845 NC_002951.2 1899906 1900388 R hypothetical protein complement(1899906..1900388) Staphylococcus aureus subsp. aureus COL 3237285 YP_186677.1 CDS SACOL1846 NC_002951.2 1900664 1901314 D hypothetical protein 1900664..1901314 Staphylococcus aureus subsp. aureus COL 3238325 YP_186678.1 CDS SACOL1847 NC_002951.2 1901395 1902390 D identified by similarity to EGAD:108623; hypothetical protein 1901395..1902390 Staphylococcus aureus subsp. aureus COL 3238698 YP_186679.1 CDS SACOL1848 NC_002951.2 1902466 1903092 D hypothetical protein 1902466..1903092 Staphylococcus aureus subsp. aureus COL 3237958 YP_186680.1 CDS SACOL1849 NC_002951.2 1903133 1903477 D hypothetical protein 1903133..1903477 Staphylococcus aureus subsp. aureus COL 3237810 YP_186681.1 CDS SACOL1850 NC_002951.2 1903575 1904126 D hypothetical protein 1903575..1904126 Staphylococcus aureus subsp. aureus COL 3237618 YP_186682.1 CDS SACOL1851 NC_002951.2 1904344 1904985 R hypothetical protein complement(1904344..1904985) Staphylococcus aureus subsp. aureus COL 3237619 YP_186683.1 CDS SACOL1853 NC_002951.2 1905286 1905462 R hypothetical protein complement(1905286..1905462) Staphylococcus aureus subsp. aureus COL 3236121 YP_186684.1 CDS SACOL1854 NC_002951.2 1905473 1905856 R hypothetical protein complement(1905473..1905856) Staphylococcus aureus subsp. aureus COL 3238137 YP_186685.1 CDS SACOL1857 NC_002951.2 1907606 1907983 R hypothetical protein complement(1907606..1907983) Staphylococcus aureus subsp. aureus COL 3238322 YP_186686.1 CDS SACOL1858 NC_002951.2 1908504 1909064 R hypothetical protein complement(1908504..1909064) Staphylococcus aureus subsp. aureus COL 3237142 YP_186687.1 CDS SACOL1859 NC_002951.2 1909269 1912319 R hypothetical protein complement(1909269..1912319) Staphylococcus aureus subsp. aureus COL 3237780 YP_186688.1 CDS SACOL1860 NC_002951.2 1912386 1912616 R hypothetical protein complement(1912386..1912616) Staphylococcus aureus subsp. aureus COL 3237336 YP_186689.1 CDS hsdS NC_002951.2 1913466 1914665 R identified by match to protein family HMM PF01420; type I restriction-modification enzyme, S subunit, EcoA family protein complement(1913466..1914665) Staphylococcus aureus subsp. aureus COL 3237806 YP_186690.1 CDS hsdM2 NC_002951.2 1914658 1916214 R identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(1914658..1916214) Staphylococcus aureus subsp. aureus COL 3237807 YP_186691.1 CDS SACOL1863 NC_002951.2 1916378 1916512 R hypothetical protein complement(1916378..1916512) Staphylococcus aureus subsp. aureus COL 3237975 YP_186692.1 CDS SACOL1864 NC_002951.2 1916577 1917296 R identified by similarity to OMNI:SA1864; match to protein family HMM PF00089; serine protease SplF complement(1916577..1917296) Staphylococcus aureus subsp. aureus COL 3236088 YP_186693.1 CDS SACOL1865 NC_002951.2 1917447 1918163 R identified by similarity to OMNI:SA1865; match to protein family HMM PF00089; serine protease SplE complement(1917447..1918163) Staphylococcus aureus subsp. aureus COL 3237760 YP_186694.1 CDS SACOL1866 NC_002951.2 1918321 1919040 R identified by similarity to OMNI:NTL01SA1687; match to protein family HMM PF00089; serine protease SplD complement(1918321..1919040) Staphylococcus aureus subsp. aureus COL 3237918 YP_186695.1 CDS splC NC_002951.2 1919161 1919880 R identified by match to protein family HMM PF00089; serine protease SplC complement(1919161..1919880) Staphylococcus aureus subsp. aureus COL 3236101 YP_186696.1 CDS splB NC_002951.2 1919938 1920660 R identified by similarity to OMNI:SA1868; match to protein family HMM PF00089; serine protease SplB complement(1919938..1920660) Staphylococcus aureus subsp. aureus COL 3237835 YP_186697.1 CDS splA NC_002951.2 1920785 1921501 R identified by similarity to GP:9739156; match to protein family HMM PF00089; serine protease SplA complement(1920785..1921501) Staphylococcus aureus subsp. aureus COL 3237977 YP_186698.1 CDS SACOL1870 NC_002951.2 1922465 1923031 D hypothetical protein 1922465..1923031 Staphylococcus aureus subsp. aureus COL 3236330 YP_186699.1 CDS epiG NC_002951.2 1923505 1924203 R identified by similarity to EGAD:41184; epidermin immunity protein F complement(1923505..1924203) Staphylococcus aureus subsp. aureus COL 3237295 YP_186700.1 CDS epiE NC_002951.2 1924200 1924961 R identified by similarity to EGAD:41183; epidermin immunity protein F complement(1924200..1924961) Staphylococcus aureus subsp. aureus COL 3237296 YP_186701.1 CDS epiF NC_002951.2 1924958 1925650 R identified by similarity to EGAD:41182; match to protein family HMM PF00005; epidermin immunity protein F complement(1924958..1925650) Staphylococcus aureus subsp. aureus COL 3237162 YP_186702.1 CDS epiP NC_002951.2 1925673 1927046 R identified by similarity to EGAD:8533; match to protein family HMM PF00082; epidermin leader peptide processing serine protease EpiP complement(1925673..1927046) Staphylococcus aureus subsp. aureus COL 3237868 YP_186703.1 CDS epiD NC_002951.2 1927056 1927574 R identified by similarity to EGAD:10889; match to protein family HMM PF02441; epidermin biosynthesis protein EpiD complement(1927056..1927574) Staphylococcus aureus subsp. aureus COL 3237638 YP_186704.1 CDS epiB NC_002951.2 1928827 1931820 R identified by similarity to EGAD:6172; match to protein family HMM PF04737; match to protein family HMM PF04738; epidermin biosynthesis protein EpiB complement(1928827..1931820) Staphylococcus aureus subsp. aureus COL 3237151 YP_186705.1 CDS epiA NC_002951.2 1931885 1932028 R identified by similarity to EGAD:6281; match to protein family HMM PF02052; lantibiotic epidermin precursor EpiA complement(1931885..1932028) Staphylococcus aureus subsp. aureus COL 3237579 YP_186706.1 CDS SACOL1879 NC_002951.2 1932920 1934239 D identified by similarity to EGAD:13897; match to protein family HMM PF01610; IS1181 transposase 1932920..1934239 Staphylococcus aureus subsp. aureus COL 3237266 YP_186707.1 CDS lukD NC_002951.2 1934671 1935654 R identified by similarity to GP:2765304; match to protein family HMM PF01117; match to protein family HMM TIGR01002; leukotoxin LukD complement(1934671..1935654) Staphylococcus aureus subsp. aureus COL 3236709 YP_186708.1 CDS lukE NC_002951.2 1935656 1936591 R identified by similarity to EGAD:22934; match to protein family HMM PF01117; match to protein family HMM TIGR01002; leukotoxin LukE complement(1935656..1936591) Staphylococcus aureus subsp. aureus COL 3237836 YP_186709.1 CDS SACOL1882 NC_002951.2 1937391 1937930 D hypothetical protein 1937391..1937930 Staphylococcus aureus subsp. aureus COL 3237605 YP_186710.1 CDS SACOL1883 NC_002951.2 1937943 1938731 D hypothetical protein 1937943..1938731 Staphylococcus aureus subsp. aureus COL 3237930 YP_186711.1 CDS SACOL1885 NC_002951.2 1941188 1941742 R identified by similarity to EGAD:109412; hypothetical protein complement(1941188..1941742) Staphylococcus aureus subsp. aureus COL 3237931 YP_186712.1 CDS SACOL1886 NC_002951.2 1941836 1942063 D hypothetical protein 1941836..1942063 Staphylococcus aureus subsp. aureus COL 3237820 YP_186713.1 CDS hemG NC_002951.2 1942065 1943465 R catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase complement(1942065..1943465) Staphylococcus aureus subsp. aureus COL 3237144 YP_186714.1 CDS hemH NC_002951.2 1943489 1944412 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1943489..1944412) Staphylococcus aureus subsp. aureus COL 3236274 YP_186715.1 CDS hemE NC_002951.2 1944470 1945507 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1944470..1945507) Staphylococcus aureus subsp. aureus COL 3237987 YP_186716.1 CDS SACOL1890 NC_002951.2 1945497 1945607 R hypothetical protein complement(1945497..1945607) Staphylococcus aureus subsp. aureus COL 3237963 YP_186717.1 CDS SACOL1891 NC_002951.2 1945770 1946273 D identified by similarity to OMNI:SA1891; RNAIII-activating protein TRAP 1945770..1946273 Staphylococcus aureus subsp. aureus COL 3236288 YP_186718.1 CDS SACOL1892 NC_002951.2 1946397 1947620 R identified by match to protein family HMM PF05975; hypothetical protein complement(1946397..1947620) Staphylococcus aureus subsp. aureus COL 3237832 YP_186719.1 CDS SACOL1893 NC_002951.2 1947613 1948353 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1947613..1948353) Staphylococcus aureus subsp. aureus COL 3237833 YP_186720.1 CDS SACOL1894 NC_002951.2 1948487 1948909 D identified by match to protein family HMM PF01230; HIT family protein 1948487..1948909 Staphylococcus aureus subsp. aureus COL 3237861 YP_186721.1 CDS SACOL1895 NC_002951.2 1949051 1949416 D identified by similarity to GB:AAO05118.1; hypothetical protein 1949051..1949416 Staphylococcus aureus subsp. aureus COL 3237299 YP_186722.1 CDS SACOL1896 NC_002951.2 1950149 1950706 D identified by similarity to OMNI:NTL01BH1184; hypothetical protein 1950149..1950706 Staphylococcus aureus subsp. aureus COL 3237905 YP_186723.1 CDS SACOL1897 NC_002951.2 1950911 1951873 D identified by similarity to EGAD:7364; match to protein family HMM PF00639; protein export protein PrsA 1950911..1951873 Staphylococcus aureus subsp. aureus COL 3237278 YP_186724.1 CDS cbf1 NC_002951.2 1951994 1952935 R catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM complement(1951994..1952935) Staphylococcus aureus subsp. aureus COL 3237279 YP_186725.1 CDS SACOL1899 NC_002951.2 1952932 1955868 R identified by similarity to GB:AAO05123.1; hypothetical protein complement(1952932..1955868) Staphylococcus aureus subsp. aureus COL 3236128 YP_186726.1 CDS SACOL1900 NC_002951.2 1955858 1957054 R identified by match to protein family HMM PF00149; DNA repair exonuclease complement(1955858..1957054) Staphylococcus aureus subsp. aureus COL 3237667 YP_186727.1 CDS SACOL1902 NC_002951.2 1957826 1958170 R identified by similarity to EGAD:108585; match to protein family HMM PF06133; hypothetical protein complement(1957826..1958170) Staphylococcus aureus subsp. aureus COL 3237950 YP_186728.1 CDS SACOL1903 NC_002951.2 1958239 1959363 R identified by match to protein family HMM PF04286; hypothetical protein complement(1958239..1959363) Staphylococcus aureus subsp. aureus COL 3237342 YP_186729.1 CDS SACOL1904 NC_002951.2 1959542 1960006 R identified by match to protein family HMM PF01381; transcriptional regulator complement(1959542..1960006) Staphylococcus aureus subsp. aureus COL 3237895 YP_186730.1 CDS SACOL1905 NC_002951.2 1960362 1960985 R identified by similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator complement(1960362..1960985) Staphylococcus aureus subsp. aureus COL 3237896 YP_186731.1 CDS SACOL1906 NC_002951.2 1961007 1962119 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase complement(1961007..1962119) Staphylococcus aureus subsp. aureus COL 3237318 YP_186732.1 CDS SACOL1907 NC_002951.2 1962282 1963103 D identified by match to protein family HMM PF00849; ribosomal large subunit pseudouridine synthase D 1962282..1963103 Staphylococcus aureus subsp. aureus COL 3237136 YP_186733.1 CDS fumC NC_002951.2 1963566 1964951 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1963566..1964951) Staphylococcus aureus subsp. aureus COL 3237674 YP_186734.1 CDS SACOL1909 NC_002951.2 1965147 1965542 R identified by similarity to GB:AAO05132.1; hypothetical protein complement(1965147..1965542) Staphylococcus aureus subsp. aureus COL 3237636 YP_186735.1 CDS SACOL1910 NC_002951.2 1965661 1966023 D hypothetical protein 1965661..1966023 Staphylococcus aureus subsp. aureus COL 3237280 YP_186736.1 CDS SACOL1911 NC_002951.2 1966319 1966471 R identified by similarity to GB:AAO05133.1; hypothetical protein complement(1966319..1966471) Staphylococcus aureus subsp. aureus COL 3237281 YP_186737.1 CDS SACOL1912 NC_002951.2 1966496 1967095 R hypothetical protein complement(1966496..1967095) Staphylococcus aureus subsp. aureus COL 3236086 YP_186738.1 CDS SACOL1913 NC_002951.2 1967254 1967724 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase complement(1967254..1967724) Staphylococcus aureus subsp. aureus COL 3237923 YP_186739.1 CDS SACOL1914 NC_002951.2 1967729 1968856 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; iron-sulfur cluster-binding protein complement(1967729..1968856) Staphylococcus aureus subsp. aureus COL 3237276 YP_186740.1 CDS SACOL1915 NC_002951.2 1969007 1969735 R identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(1969007..1969735) Staphylococcus aureus subsp. aureus COL 3237990 YP_186741.1 CDS SACOL1916 NC_002951.2 1969722 1971179 R identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease/substrate-binding protein complement(1969722..1971179) Staphylococcus aureus subsp. aureus COL 3237991 YP_186742.1 CDS SACOL1917 NC_002951.2 1971437 1972498 R identified by match to protein family HMM PF02378; PTS system, IIC component complement(1971437..1972498) Staphylococcus aureus subsp. aureus COL 3237559 YP_186743.1 CDS SACOL1918 NC_002951.2 1972991 1974310 D identified by similarity to EGAD:13897; match to protein family HMM PF01610; IS1181 transposase 1972991..1974310 Staphylococcus aureus subsp. aureus COL 3238022 YP_186744.1 CDS SACOL1919 NC_002951.2 1982818 1983264 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1982818..1983264) Staphylococcus aureus subsp. aureus COL 3238214 YP_186745.1 CDS SACOL1920 NC_002951.2 1983361 1984311 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase complement(1983361..1984311) Staphylococcus aureus subsp. aureus COL 3238215 YP_186746.1 CDS bcp NC_002951.2 1984317 1984772 R identified by match to protein family HMM PF00578; bacterioferritin comigratory protein complement(1984317..1984772) Staphylococcus aureus subsp. aureus COL 3238210 YP_186747.1 CDS hemL2 NC_002951.2 1984853 1986142 D converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 1984853..1986142 Staphylococcus aureus subsp. aureus COL 3237539 YP_186748.1 CDS SACOL1923 NC_002951.2 1986435 1987529 D identified by match to protein family HMM PF06081; hypothetical protein 1986435..1987529 Staphylococcus aureus subsp. aureus COL 3237540 YP_186749.1 CDS SACOL1924 NC_002951.2 1987720 1989456 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; toxin exporting ABC transporter permease/ATP-binding protein complement(1987720..1989456) Staphylococcus aureus subsp. aureus COL 3237541 YP_186750.1 CDS SACOL1925 NC_002951.2 1989747 1990289 R identified by match to protein family HMM PF04167; hypothetical protein complement(1989747..1990289) Staphylococcus aureus subsp. aureus COL 3237526 YP_186751.1 CDS mutY NC_002951.2 1990591 1991628 R identified by similarity to EGAD:19424; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(1990591..1991628) Staphylococcus aureus subsp. aureus COL 3237527 YP_186752.1 CDS SACOL1927 NC_002951.2 1991780 1992757 D identified by match to protein family HMM PF04307; hypothetical protein 1991780..1992757 Staphylococcus aureus subsp. aureus COL 3237528 YP_186753.1 CDS SACOL1928 NC_002951.2 1993018 1993854 R hypothetical protein complement(1993018..1993854) Staphylococcus aureus subsp. aureus COL 3237529 YP_186754.1 CDS SACOL1929 NC_002951.2 1993863 1995380 R ABC transporter ATP-binding protein complement(1993863..1995380) Staphylococcus aureus subsp. aureus COL 3237530 YP_186755.1 CDS SACOL1930 NC_002951.2 1995395 1995709 R hypothetical protein complement(1995395..1995709) Staphylococcus aureus subsp. aureus COL 3237531 YP_186756.1 CDS recX NC_002951.2 1995687 1996505 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1995687..1996505) Staphylococcus aureus subsp. aureus COL 3237532 YP_186757.1 CDS SACOL1932 NC_002951.2 1996766 1997575 R monofunctional; catalyzes the elongation of glycan strands in cell wall biosynthesis; glycosyltransferase complement(1996766..1997575) Staphylococcus aureus subsp. aureus COL 3237533 YP_186758.1 CDS SACOL1933 NC_002951.2 1997916 1998431 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; ThiJ/PfpI family protein complement(1997916..1998431) Staphylococcus aureus subsp. aureus COL 3237519 YP_186759.1 CDS SACOL1934 NC_002951.2 1998562 1998723 R hypothetical protein complement(1998562..1998723) Staphylococcus aureus subsp. aureus COL 3237520 YP_186760.1 CDS SACOL1935 NC_002951.2 1998947 2000098 D identified by similarity to GP:10173504; match to protein family HMM PF04055; hypothetical protein 1998947..2000098 Staphylococcus aureus subsp. aureus COL 3237521 YP_186761.1 CDS SACOL1936 NC_002951.2 2000358 2000888 R identified by match to protein family HMM PF03061; hypothetical protein complement(2000358..2000888) Staphylococcus aureus subsp. aureus COL 3237522 YP_186762.1 CDS pepS NC_002951.2 2000978 2002234 R identified by similarity to SP:Q9X4A7; match to protein family HMM PF02073; aminopeptidase PepS complement(2000978..2002234) Staphylococcus aureus subsp. aureus COL 3237523 YP_186763.1 CDS SACOL1938 NC_002951.2 2002237 2002443 R identified by match to protein family HMM PF06569; hypothetical protein complement(2002237..2002443) Staphylococcus aureus subsp. aureus COL 3237524 YP_186764.1 CDS SACOL1939 NC_002951.2 2002584 2003048 D identified by match to protein family HMM PF01451; phosphotyrosine protein phosphatase 2002584..2003048 Staphylococcus aureus subsp. aureus COL 3237525 YP_186765.1 CDS SACOL1940 NC_002951.2 2003055 2003330 D identified by similarity to GB:AAO05166.1; hypothetical protein 2003055..2003330 Staphylococcus aureus subsp. aureus COL 3237511 YP_186766.1 CDS SACOL1941 NC_002951.2 2003608 2004825 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 2003608..2004825 Staphylococcus aureus subsp. aureus COL 3237512 YP_186767.1 CDS vraR NC_002951.2 2004941 2005570 R identified by similarity to GP:9501772; similarity to OMNI:NTL01SA1761; match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator VraR complement(2004941..2005570) Staphylococcus aureus subsp. aureus COL 3237513 YP_186768.1 CDS vraS NC_002951.2 2005560 2006603 R identified by similarity to OMNI:NTL02SA1888; match to protein family HMM PF02518; sensor histidine kinase VraS complement(2005560..2006603) Staphylococcus aureus subsp. aureus COL 3237514 YP_186769.1 CDS SACOL1944 NC_002951.2 2006600 2007301 R hypothetical protein complement(2006600..2007301) Staphylococcus aureus subsp. aureus COL 3237515 YP_186770.1 CDS SACOL1945 NC_002951.2 2007316 2007702 R hypothetical protein complement(2007316..2007702) Staphylococcus aureus subsp. aureus COL 3237516 YP_186771.1 CDS SACOL1946 NC_002951.2 2007919 2008677 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(2007919..2008677) Staphylococcus aureus subsp. aureus COL 3237517 YP_186772.1 CDS SACOL1947 NC_002951.2 2009205 2010191 D hypothetical protein 2009205..2010191 Staphylococcus aureus subsp. aureus COL 3237518 YP_186773.1 CDS SACOL1948 NC_002951.2 2010622 2011035 R hypothetical protein complement(2010622..2011035) Staphylococcus aureus subsp. aureus COL 3237503 YP_186774.1 CDS SACOL1949 NC_002951.2 2011064 2011174 R hypothetical protein complement(2011064..2011174) Staphylococcus aureus subsp. aureus COL 3237504 YP_186775.1 CDS SACOL1950 NC_002951.2 2011260 2011991 R identified by match to protein family HMM PF07685; cobyric acid synthase complement(2011260..2011991) Staphylococcus aureus subsp. aureus COL 3237505 YP_186776.1 CDS SACOL1951 NC_002951.2 2011993 2013306 R Mur ligase complement(2011993..2013306) Staphylococcus aureus subsp. aureus COL 3237506 YP_186777.1 CDS SACOL1952 NC_002951.2 2013598 2014098 D identified by similarity to EGAD:8114; match to protein family HMM PF00210; ferritins family protein 2013598..2014098 Staphylococcus aureus subsp. aureus COL 3237507 YP_186778.1 CDS SACOL1953 NC_002951.2 2014180 2014272 R hypothetical protein complement(2014180..2014272) Staphylococcus aureus subsp. aureus COL 3237508 YP_186779.1 CDS SACOL1954 NC_002951.2 2014487 2015041 D identified by match to protein family HMM PF00929; exonuclease 2014487..2015041 Staphylococcus aureus subsp. aureus COL 3237509 YP_186780.1 CDS dinP NC_002951.2 2015109 2016179 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2015109..2016179) Staphylococcus aureus subsp. aureus COL 3237510 YP_186781.1 CDS SACOL1956 NC_002951.2 2016426 2016956 R identified by similarity to GB:AAO05180.1; hypothetical protein complement(2016426..2016956) Staphylococcus aureus subsp. aureus COL 3237495 YP_186782.1 CDS SACOL1957 NC_002951.2 2017126 2018487 R identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; RNA methyltransferase complement(2017126..2018487) Staphylococcus aureus subsp. aureus COL 3237496 YP_186783.1 CDS SACOL1958 NC_002951.2 2018568 2019515 R similar to YegS from E. coli; lipid kinase complement(2018568..2019515) Staphylococcus aureus subsp. aureus COL 3237497 YP_186784.1 CDS gatB NC_002951.2 2020284 2021711 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2020284..2021711) Staphylococcus aureus subsp. aureus COL 3237498 YP_186785.1 CDS gatA NC_002951.2 2021724 2023181 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(2021724..2023181) Staphylococcus aureus subsp. aureus COL 3237499 YP_186786.1 CDS gatC NC_002951.2 2023183 2023485 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2023183..2023485) Staphylococcus aureus subsp. aureus COL 3237500 YP_186787.1 CDS SACOL1963 NC_002951.2 2023853 2025391 D identified by similarity to EGAD:107637; match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; high affinity proline permease 2023853..2025391 Staphylococcus aureus subsp. aureus COL 3237501 YP_186788.1 CDS camS NC_002951.2 2025480 2026679 R identified by similarity to GP:20522056; match to protein family HMM PF07537; hypothetical protein complement(2025480..2026679) Staphylococcus aureus subsp. aureus COL 3238098 YP_186789.1 CDS ligA NC_002951.2 2026692 2028695 R identified by similarity to SP:O87703; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; DNA ligase, NAD-dependent complement(2026692..2028695) Staphylococcus aureus subsp. aureus COL 3238150 YP_186790.1 CDS pcrA NC_002951.2 2028699 2030891 R identified by similarity to SP:Q53727; match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(2028699..2030891) Staphylococcus aureus subsp. aureus COL 3238182 YP_186791.1 CDS SACOL1967 NC_002951.2 2030888 2031580 R PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase complement(2030888..2031580) Staphylococcus aureus subsp. aureus COL 3238021 YP_186792.1 CDS SACOL1968 NC_002951.2 2031752 2032054 R identified by match to protein family HMM PF01371; hypothetical protein complement(2031752..2032054) Staphylococcus aureus subsp. aureus COL 3238635 YP_186793.1 CDS purB NC_002951.2 2032163 2033458 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2032163..2033458) Staphylococcus aureus subsp. aureus COL 3238180 YP_186794.1 CDS sspB2 NC_002951.2 2034319 2035485 D identified by similarity to OMNI:SA1056; cysteine protease precursor SspB 2034319..2035485 Staphylococcus aureus subsp. aureus COL 3238181 YP_186795.1 CDS SACOL1971 NC_002951.2 2035516 2035842 D hypothetical protein 2035516..2035842 Staphylococcus aureus subsp. aureus COL 3238184 YP_186796.1 CDS SACOL1972 NC_002951.2 2036134 2036307 R hypothetical protein complement(2036134..2036307) Staphylococcus aureus subsp. aureus COL 3238258 YP_186797.1 CDS SACOL1973 NC_002951.2 2036288 2036890 R hypothetical protein complement(2036288..2036890) Staphylococcus aureus subsp. aureus COL 3238039 YP_186798.1 CDS nadE NC_002951.2 2037161 2037982 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2037161..2037982) Staphylococcus aureus subsp. aureus COL 3238369 YP_186799.1 CDS SACOL1975 NC_002951.2 2037975 2039444 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2037975..2039444) Staphylococcus aureus subsp. aureus COL 3238409 YP_186800.1 CDS SACOL1976 NC_002951.2 2039628 2040704 D identified by match to protein family HMM PF02898; nitric-oxide synthase, oxygenase subunit 2039628..2040704 Staphylococcus aureus subsp. aureus COL 3238410 YP_186801.1 CDS pheA NC_002951.2 2040724 2041518 D identified by similarity to EGAD:17359; similarity to EGAD:29700; match to protein family HMM PF00800; match to protein family HMM PF01842; prephenate dehydratase 2040724..2041518 Staphylococcus aureus subsp. aureus COL 3238627 YP_186802.1 CDS SACOL1978 NC_002951.2 2041543 2041665 R hypothetical protein complement(2041543..2041665) Staphylococcus aureus subsp. aureus COL 3238435 YP_186803.1 CDS SACOL1979 NC_002951.2 2041708 2043270 R identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium-dependent transporter complement(2041708..2043270) Staphylococcus aureus subsp. aureus COL 3238267 YP_186804.1 CDS SACOL1980 NC_002951.2 2043475 2044572 R hypothetical protein complement(2043475..2044572) Staphylococcus aureus subsp. aureus COL 3238268 YP_186805.1 CDS SACOL1981 NC_002951.2 2044944 2045504 D identified by match to protein family HMM PF00857; isochorismatase 2044944..2045504 Staphylococcus aureus subsp. aureus COL 3238234 YP_186806.1 CDS ppaC NC_002951.2 2045557 2046486 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2045557..2046486 Staphylococcus aureus subsp. aureus COL 3238596 YP_186807.1 CDS SACOL1983 NC_002951.2 2046681 2046854 R hypothetical protein complement(2046681..2046854) Staphylococcus aureus subsp. aureus COL 3238087 YP_186808.1 CDS aldA2 NC_002951.2 2046906 2048285 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 2046906..2048285 Staphylococcus aureus subsp. aureus COL 3238088 YP_186809.1 CDS SACOL1985 NC_002951.2 2048405 2049433 R identified by similarity to EGAD:107450; hypothetical protein complement(2048405..2049433) Staphylococcus aureus subsp. aureus COL 3238407 YP_186810.1 CDS SACOL1986 NC_002951.2 2049703 2050104 D hypothetical protein 2049703..2050104 Staphylococcus aureus subsp. aureus COL 3238164 YP_186811.1 CDS SACOL1987 NC_002951.2 2050677 2050850 R hypothetical protein complement(2050677..2050850) Staphylococcus aureus subsp. aureus COL 3238271 YP_186812.1 CDS SACOL1988 NC_002951.2 2051301 2052341 D identified by match to protein family HMM PF03417; hypothetical protein 2051301..2052341 Staphylococcus aureus subsp. aureus COL 3238272 YP_186813.1 CDS SACOL1989 NC_002951.2 2052398 2053240 R identified by similarity to GB:AAO05216.1; hypothetical protein complement(2052398..2053240) Staphylococcus aureus subsp. aureus COL 3238221 YP_186814.1 CDS SACOL1990 NC_002951.2 2053237 2053794 R hypothetical protein complement(2053237..2053794) Staphylococcus aureus subsp. aureus COL 3238229 YP_186815.1 CDS SACOL1991 NC_002951.2 2053854 2054378 R identified by similarity to GB:AAO05218.1; hypothetical protein complement(2053854..2054378) Staphylococcus aureus subsp. aureus COL 3238230 YP_186816.1 CDS SACOL1992 NC_002951.2 2054499 2055062 D identified by similarity to GB:BAC14289.1; hypothetical protein 2054499..2055062 Staphylococcus aureus subsp. aureus COL 3238377 YP_186817.1 CDS SACOL1993 NC_002951.2 2055128 2055868 R identified by similarity to GB:AAO05220.1; hypothetical protein complement(2055128..2055868) Staphylococcus aureus subsp. aureus COL 3238573 YP_186818.1 CDS SACOL1994 NC_002951.2 2055868 2056740 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2055868..2056740) Staphylococcus aureus subsp. aureus COL 3238035 YP_186819.1 CDS SACOL1995 NC_002951.2 2056737 2057417 R identified by similarity to GB:AAO05222.1; hypothetical protein complement(2056737..2057417) Staphylococcus aureus subsp. aureus COL 3238036 YP_186820.1 CDS SACOL1996 NC_002951.2 2057418 2058314 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2057418..2058314) Staphylococcus aureus subsp. aureus COL 3238316 YP_186821.1 CDS SACOL1997 NC_002951.2 2058311 2058691 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2058311..2058691) Staphylococcus aureus subsp. aureus COL 3238638 YP_186822.1 CDS SACOL1998 NC_002951.2 2058955 2059131 R identified by similarity to GB:AAO05225.1; hypothetical protein complement(2058955..2059131) Staphylococcus aureus subsp. aureus COL 3238639 YP_186823.1 CDS SACOL1999 NC_002951.2 2059374 2059472 R hypothetical protein complement(2059374..2059472) Staphylococcus aureus subsp. aureus COL 3238152 YP_186824.1 CDS SACOL2000 NC_002951.2 2059672 2060958 D hypothetical protein 2059672..2060958 Staphylococcus aureus subsp. aureus COL 3238405 YP_186825.1 CDS map NC_002951.2 2061282 2063337 R identified by similarity to GP:8648965; map protein, programmed frameshift complement(join(2061282..2061587,2061589..2063337)) Staphylococcus aureus subsp. aureus COL 3238647 YP_186826.1 CDS hlb NC_002951.2 2063726 2064718 D identified by similarity to OMNI:SA2003; match to protein family HMM PF03372; phospholipase C 2063726..2064718 Staphylococcus aureus subsp. aureus COL 3238648 YP_186827.1 CDS SACOL2004 NC_002951.2 2064956 2065828 R identified by match to protein family HMM PF01117; match to protein family HMM TIGR01002; leukocidin subunit precursor complement(2064956..2065828) Staphylococcus aureus subsp. aureus COL 3238002 YP_186828.1 CDS SACOL2006 NC_002951.2 2065994 2067049 R identified by match to protein family HMM PF01117; Aerolysin/leukocidin family protein complement(2065994..2067049) Staphylococcus aureus subsp. aureus COL 3238231 YP_186829.1 CDS SACOL2009 NC_002951.2 2069080 2069925 R identified by similarity to SP:P39887; tetracenomycin polyketide synthesis O-methyltransferase TcmP complement(2069080..2069925) Staphylococcus aureus subsp. aureus COL 3238212 YP_186830.1 CDS SACOL2010 NC_002951.2 2069987 2070898 R identified by similarity to EGAD:22102; match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein complement(2069987..2070898) Staphylococcus aureus subsp. aureus COL 3238213 YP_186831.1 CDS SACOL2011 NC_002951.2 2071059 2072366 D identified by match to protein family HMM PF02386; sodium transport family protein 2071059..2072366 Staphylococcus aureus subsp. aureus COL 3238599 YP_186832.1 CDS SACOL2012 NC_002951.2 2073219 2073662 R identified by match to protein family HMM PF00583; acetyltransferase complement(2073219..2073662) Staphylococcus aureus subsp. aureus COL 3238122 YP_186833.1 CDS SACOL2013 NC_002951.2 2073768 2074205 R hypothetical protein complement(2073768..2074205) Staphylococcus aureus subsp. aureus COL 3238123 YP_186834.1 CDS SACOL2014 NC_002951.2 2074523 2075113 R identified by similarity to EGAD:101510; match to protein family HMM PF03592; phage terminase complement(2074523..2075113) Staphylococcus aureus subsp. aureus COL 3237998 YP_186835.1 CDS groEL NC_002951.2 2076024 2077640 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2076024..2077640) Staphylococcus aureus subsp. aureus COL 3238008 YP_186836.1 CDS groES NC_002951.2 2077716 2078000 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2077716..2078000) Staphylococcus aureus subsp. aureus COL 3238330 YP_186837.1 CDS SACOL2018 NC_002951.2 2078175 2078918 D identified by match to protein family HMM PF02517; hypothetical protein 2078175..2078918 Staphylococcus aureus subsp. aureus COL 3238513 YP_186838.1 CDS SACOL2019 NC_002951.2 2078943 2080202 R identified by similarity to GP:8101009; sdrH protein complement(2078943..2080202) Staphylococcus aureus subsp. aureus COL 3238514 YP_186839.1 CDS SACOL2020 NC_002951.2 2080399 2081025 D identified by match to protein family HMM PF00881; hypothetical protein 2080399..2081025 Staphylococcus aureus subsp. aureus COL 3238427 YP_186840.1 CDS SACOL2021 NC_002951.2 2081386 2082171 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 2081386..2082171 Staphylococcus aureus subsp. aureus COL 3238161 YP_186841.1 CDS hld NC_002951.2 2082768 2082902 R Lyses erythrocytes and other mammalian cells; delta-hemolysin complement(2082768..2082902) Staphylococcus aureus subsp. aureus COL 3238162 YP_186842.1 CDS agrB NC_002951.2 2083138 2083707 D identified by match to protein family HMM PF04647; accessory gene regulator protein B 2083138..2083707 Staphylococcus aureus subsp. aureus COL 3236539 YP_186843.1 CDS agrD NC_002951.2 2083704 2083844 D identified by similarity to EGAD:18902; match to protein family HMM PF05931; accessory gene regulator protein D 2083704..2083844 Staphylococcus aureus subsp. aureus COL 3236385 YP_186844.1 CDS argC2 NC_002951.2 2083869 2085161 D identified by match to protein family HMM PF02518; accessory gene regulator protein C 2083869..2085161 Staphylococcus aureus subsp. aureus COL 3236411 YP_186845.1 CDS agrA NC_002951.2 2085180 2085896 D identified by similarity to EGAD:16137; match to protein family HMM PF00072; match to protein family HMM PF04397; accessory gene regulator protein A 2085180..2085896 Staphylococcus aureus subsp. aureus COL 3236412 YP_186846.1 CDS SACOL2028 NC_002951.2 2086263 2087222 R identified by similarity to EGAD:129878; match to protein family HMM PF00294; fructokinase complement(2086263..2087222) Staphylococcus aureus subsp. aureus COL 3236366 YP_186847.1 CDS cscA NC_002951.2 2087219 2088703 R identified by similarity to EGAD:20672; match to protein family HMM PF00251; match to protein family HMM TIGR01322; sucrose-6-phosphate hydrolase complement(2087219..2088703) Staphylococcus aureus subsp. aureus COL 3237139 YP_186848.1 CDS scrR NC_002951.2 2088852 2089802 R identified by similarity to EGAD:43207; match to protein family HMM PF00356; match to protein family HMM PF00532; sucrose operon repressor complement(2088852..2089802) Staphylococcus aureus subsp. aureus COL 3237140 YP_186849.1 CDS SACOL2031 NC_002951.2 2089985 2091235 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter family protein complement(2089985..2091235) Staphylococcus aureus subsp. aureus COL 3237731 YP_186850.1 CDS SACOL2033 NC_002951.2 2091442 2091666 R identified by match to protein family HMM PF01206; hypothetical protein complement(2091442..2091666) Staphylococcus aureus subsp. aureus COL 3236276 YP_186851.1 CDS SACOL2034 NC_002951.2 2091726 2092805 R identified by match to protein family HMM PF04143; hypothetical protein complement(2091726..2092805) Staphylococcus aureus subsp. aureus COL 3236277 YP_186852.1 CDS SACOL2035 NC_002951.2 2093109 2093744 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(2093109..2093744) Staphylococcus aureus subsp. aureus COL 3236155 YP_186853.1 CDS SACOL2036 NC_002951.2 2093997 2095925 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2093997..2095925 Staphylococcus aureus subsp. aureus COL 3236158 YP_186854.1 CDS SACOL2037 NC_002951.2 2096287 2097897 D identified by match to protein family HMM PF00488; hypothetical protein 2096287..2097897 Staphylococcus aureus subsp. aureus COL 3236159 YP_186855.1 CDS SACOL2038 NC_002951.2 2097999 2099024 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(2097999..2099024) Staphylococcus aureus subsp. aureus COL 3236089 YP_186856.1 CDS SACOL2039 NC_002951.2 2099017 2099481 R identified by similarity to PIR:E69786; match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(2099017..2099481) Staphylococcus aureus subsp. aureus COL 3236150 YP_186857.1 CDS SACOL2040 NC_002951.2 2099454 2100116 R identified by match to protein family HMM PF00814; hypothetical protein complement(2099454..2100116) Staphylococcus aureus subsp. aureus COL 3236151 YP_186858.1 CDS SACOL2041 NC_002951.2 2100097 2100531 R identified by similarity to OMNI:NTL01BH0546; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(2100097..2100531) Staphylococcus aureus subsp. aureus COL 3236693 YP_186859.1 CDS ilvD NC_002951.2 2101069 2102757 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2101069..2102757 Staphylococcus aureus subsp. aureus COL 3236694 YP_186860.1 CDS ilvB NC_002951.2 2102785 2104554 D identified by match to protein family HMM PF00205; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 2102785..2104554 Staphylococcus aureus subsp. aureus COL 3236297 YP_186861.1 CDS SACOL2044 NC_002951.2 2104554 2104808 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small; acetolactate synthase 1 regulatory subunit 2104554..2104808 Staphylococcus aureus subsp. aureus COL 3237563 YP_186862.1 CDS ilvC NC_002951.2 2104945 2105949 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2104945..2105949 Staphylococcus aureus subsp. aureus COL 3238699 YP_186863.1 CDS leuA NC_002951.2 2105979 2107508 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2105979..2107508 Staphylococcus aureus subsp. aureus COL 3238700 YP_186864.1 CDS leuB NC_002951.2 2107511 2108557 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2107511..2108557 Staphylococcus aureus subsp. aureus COL 3238128 YP_186865.1 CDS leuC NC_002951.2 2108571 2109941 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2108571..2109941 Staphylococcus aureus subsp. aureus COL 3238073 YP_186866.1 CDS leuD NC_002951.2 2109942 2110514 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2109942..2110514 Staphylococcus aureus subsp. aureus COL 3238074 YP_186867.1 CDS ilvA2 NC_002951.2 2110529 2111797 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 2110529..2111797 Staphylococcus aureus subsp. aureus COL 3238418 YP_186868.1 CDS SACOL2052 NC_002951.2 2118160 2118615 R identified by match to protein family HMM PF03926; hypothetical protein complement(2118160..2118615) Staphylococcus aureus subsp. aureus COL 3238500 YP_186869.1 CDS SACOL2053 NC_002951.2 2118608 2120758 R identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(2118608..2120758) Staphylococcus aureus subsp. aureus COL 3238501 YP_186870.1 CDS rpoF NC_002951.2 2121192 2121962 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB complement(2121192..2121962) Staphylococcus aureus subsp. aureus COL 3237972 YP_186871.1 CDS rsbW NC_002951.2 2121937 2122416 R binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW complement(2121937..2122416) Staphylococcus aureus subsp. aureus COL 3237973 YP_186872.1 CDS rsbV NC_002951.2 2122418 2122744 R identified by similarity to SP:P95842; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor RsbV complement(2122418..2122744) Staphylococcus aureus subsp. aureus COL 3237741 YP_186873.1 CDS rsbU NC_002951.2 2122864 2123865 R identified by similarity to GP:1729794; match to protein family HMM PF07228; sigma factor B regulator protein complement(2122864..2123865) Staphylococcus aureus subsp. aureus COL 3237742 YP_186874.1 CDS SACOL2058 NC_002951.2 2124215 2124577 R identified by similarity to GP:10834755; match to protein family HMM PF02452; PemK family protein complement(2124215..2124577) Staphylococcus aureus subsp. aureus COL 3238426 YP_186875.1 CDS SACOL2059 NC_002951.2 2124574 2124744 R hypothetical protein complement(2124574..2124744) Staphylococcus aureus subsp. aureus COL 3238046 YP_186876.1 CDS alr NC_002951.2 2124829 2125977 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(2124829..2125977) Staphylococcus aureus subsp. aureus COL 3238047 YP_186877.1 CDS acpS NC_002951.2 2126043 2126402 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2126043..2126402) Staphylococcus aureus subsp. aureus COL 3238092 YP_186878.1 CDS SACOL2062 NC_002951.2 2126406 2126900 R identified by match to protein family HMM PF03703; hypothetical protein complement(2126406..2126900) Staphylococcus aureus subsp. aureus COL 3238093 YP_186879.1 CDS SACOL2063 NC_002951.2 2126884 2128467 R identified by match to protein family HMM PF03703; hypothetical protein complement(2126884..2128467) Staphylococcus aureus subsp. aureus COL 3238269 YP_186880.1 CDS SACOL2064 NC_002951.2 2128460 2128939 R hypothetical protein complement(2128460..2128939) Staphylococcus aureus subsp. aureus COL 3238270 YP_186881.1 CDS SACOL2065 NC_002951.2 2129035 2129151 R hypothetical protein complement(2129035..2129151) Staphylococcus aureus subsp. aureus COL 3238364 YP_186882.1 CDS kdpC NC_002951.2 2129148 2129708 R one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(2129148..2129708) Staphylococcus aureus subsp. aureus COL 3238365 YP_186883.1 CDS kdpB NC_002951.2 2129728 2131755 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(2129728..2131755) Staphylococcus aureus subsp. aureus COL 3238586 YP_186884.1 CDS kdpA NC_002951.2 2131774 2133450 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(2131774..2133450) Staphylococcus aureus subsp. aureus COL 3238587 YP_186885.1 CDS kdpF NC_002951.2 2133474 2133584 R identified by match to protein family HMM TIGR02115; K+-transporting ATPase, F subunit complement(2133474..2133584) Staphylococcus aureus subsp. aureus COL 3238085 YP_186886.1 CDS kdpD NC_002951.2 2133722 2136379 D identified by similarity to EGAD:149594; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD 2133722..2136379 Staphylococcus aureus subsp. aureus COL 3238086 YP_186887.1 CDS kdpE NC_002951.2 2136379 2137074 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator KdpE 2136379..2137074 Staphylococcus aureus subsp. aureus COL 3238112 YP_186888.1 CDS SACOL2072 NC_002951.2 2137443 2138963 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(2137443..2138963) Staphylococcus aureus subsp. aureus COL 3238041 YP_186889.1 CDS murF NC_002951.2 2139480 2140838 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2139480..2140838) Staphylococcus aureus subsp. aureus COL 3238042 YP_186890.1 CDS ddl NC_002951.2 2140853 2141923 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(2140853..2141923) Staphylococcus aureus subsp. aureus COL 3238133 YP_186891.1 CDS ftsW NC_002951.2 2142241 2143443 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 2142241..2143443 Staphylococcus aureus subsp. aureus COL 3238134 YP_186892.1 CDS SACOL2076 NC_002951.2 2143707 2143844 R identified by similarity to GB:AAO05283.1; hypothetical protein complement(2143707..2143844) Staphylococcus aureus subsp. aureus COL 3238493 YP_186893.1 CDS SACOL2077 NC_002951.2 2143972 2144181 R identified by similarity to GB:AAO05284.1; match to protein family HMM PF00403; hypothetical protein complement(2143972..2144181) Staphylococcus aureus subsp. aureus COL 3238494 YP_186894.1 CDS SACOL2078 NC_002951.2 2144193 2144486 R identified by match to protein family HMM PF02583; hypothetical protein complement(2144193..2144486) Staphylococcus aureus subsp. aureus COL 3238400 YP_186895.1 CDS cls2 NC_002951.2 2144652 2146136 D identified by similarity to SP:O66043; match to protein family HMM PF00614; cardiolipin synthetase 2144652..2146136 Staphylococcus aureus subsp. aureus COL 3238401 YP_186896.1 CDS SACOL2080 NC_002951.2 2146164 2146811 D identified by similarity to GP:10175456; match to protein family HMM PF01966; HD domain-containing protein 2146164..2146811 Staphylococcus aureus subsp. aureus COL 3238511 YP_186897.1 CDS SACOL2081 NC_002951.2 2146986 2147078 R hypothetical protein complement(2146986..2147078) Staphylococcus aureus subsp. aureus COL 3238512 YP_186898.1 CDS SACOL2082 NC_002951.2 2147624 2148496 R identified by match to protein family HMM PF02096; hypothetical protein complement(2147624..2148496) Staphylococcus aureus subsp. aureus COL 3238110 YP_186899.1 CDS thiE NC_002951.2 2148582 2149223 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(2148582..2149223) Staphylococcus aureus subsp. aureus COL 3238111 YP_186900.1 CDS thiM NC_002951.2 2149225 2150016 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2149225..2150016) Staphylococcus aureus subsp. aureus COL 3238160 YP_186901.1 CDS thiD2 NC_002951.2 2150000 2150830 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(2150000..2150830) Staphylococcus aureus subsp. aureus COL 3238664 YP_186902.1 CDS SACOL2086 NC_002951.2 2150823 2151512 R identified by similarity to EGAD:24145; match to protein family HMM PF03070; TenA family transcription regulator complement(2150823..2151512) Staphylococcus aureus subsp. aureus COL 3238665 YP_186903.1 CDS SACOL2088 NC_002951.2 2151898 2152593 R identified by match to protein family HMM PF06737; sceD protein complement(2151898..2152593) Staphylococcus aureus subsp. aureus COL 3238684 YP_186904.1 CDS SACOL2089 NC_002951.2 2152982 2153377 R identified by similarity to EGAD:17778; match to protein family HMM PF00436; match to protein family HMM TIGR00621; ssDNA-binding protein complement(2152982..2153377) Staphylococcus aureus subsp. aureus COL 3238685 YP_186905.1 CDS ywpF NC_002951.2 2153571 2154011 D identified by similarity to GP:2735511; hypothetical protein 2153571..2154011 Staphylococcus aureus subsp. aureus COL 3238675 YP_186906.1 CDS fabZ NC_002951.2 2154070 2154510 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2154070..2154510) Staphylococcus aureus subsp. aureus COL 3238676 YP_186907.1 CDS murAA NC_002951.2 2154544 2155809 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2154544..2155809) Staphylococcus aureus subsp. aureus COL 3238693 YP_186908.1 CDS SACOL2093 NC_002951.2 2155920 2156153 R identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327; hypothetical protein complement(2155920..2156153) Staphylococcus aureus subsp. aureus COL 3238694 YP_186909.1 CDS atpC NC_002951.2 2156715 2157119 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(2156715..2157119) Staphylococcus aureus subsp. aureus COL 3237489 YP_186910.1 CDS atpD NC_002951.2 2157139 2158551 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(2157139..2158551) Staphylococcus aureus subsp. aureus COL 3237490 YP_186911.1 CDS atpG NC_002951.2 2158573 2159439 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2158573..2159439) Staphylococcus aureus subsp. aureus COL 3237491 YP_186912.1 CDS atpA NC_002951.2 2159470 2160978 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2159470..2160978) Staphylococcus aureus subsp. aureus COL 3237492 YP_186913.1 CDS atpH NC_002951.2 2161000 2161539 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2161000..2161539) Staphylococcus aureus subsp. aureus COL 3237493 YP_186914.1 CDS atpF NC_002951.2 2161539 2162060 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; F0F1 ATP synthase subunit B complement(2161539..2162060) Staphylococcus aureus subsp. aureus COL 3237494 YP_186915.1 CDS atpE NC_002951.2 2162258 2162470 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2162258..2162470) Staphylococcus aureus subsp. aureus COL 3237481 YP_186916.1 CDS atpB NC_002951.2 2162513 2163241 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2162513..2163241) Staphylococcus aureus subsp. aureus COL 3237482 YP_186917.1 CDS SACOL2102 NC_002951.2 2163262 2163615 R identified by similarity to GB:AAO05306.1; hypothetical protein complement(2163262..2163615) Staphylococcus aureus subsp. aureus COL 3237483 YP_186918.1 CDS SACOL2103 NC_002951.2 2163782 2164909 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-GlcNAc 2-epimerase complement(2163782..2164909) Staphylococcus aureus subsp. aureus COL 3237484 YP_186919.1 CDS upp NC_002951.2 2164933 2165562 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2164933..2165562) Staphylococcus aureus subsp. aureus COL 3237485 YP_186920.1 CDS glyA NC_002951.2 2165590 2166828 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2165590..2166828) Staphylococcus aureus subsp. aureus COL 3237486 YP_186921.1 CDS SACOL2106 NC_002951.2 2166855 2167379 R identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440; hypothetical protein complement(2166855..2167379) Staphylococcus aureus subsp. aureus COL 3237487 YP_186922.1 CDS SACOL2107 NC_002951.2 2167486 2167905 R identified by similarity to EGAD:30369; match to protein family HMM PF01451; phosphotyrosine protein phosphatase complement(2167486..2167905) Staphylococcus aureus subsp. aureus COL 3237473 YP_186923.1 CDS SACOL2108 NC_002951.2 2167902 2168957 R identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(2167902..2168957) Staphylococcus aureus subsp. aureus COL 3237474 YP_186924.1 CDS SACOL2109 NC_002951.2 2169032 2169868 R identified by match to protein family HMM TIGR00536; HemK family modification methylase complement(2169032..2169868) Staphylococcus aureus subsp. aureus COL 3237475 YP_186925.1 CDS prfA NC_002951.2 2169855 2170931 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2169855..2170931) Staphylococcus aureus subsp. aureus COL 3237476 YP_186926.1 CDS tdk NC_002951.2 2170932 2171531 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2170932..2171531) Staphylococcus aureus subsp. aureus COL 3237477 YP_186927.1 CDS rpmE2 NC_002951.2 2171878 2172132 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(2171878..2172132) Staphylococcus aureus subsp. aureus COL 3237478 YP_186928.1 CDS rho NC_002951.2 2172250 2173566 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2172250..2173566) Staphylococcus aureus subsp. aureus COL 3237479 YP_186929.1 CDS SACOL2114 NC_002951.2 2173813 2175240 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase complement(2173813..2175240) Staphylococcus aureus subsp. aureus COL 3237480 YP_186930.1 CDS SACOL2115 NC_002951.2 2175478 2175813 R identified by similarity to EGAD:109282; match to protein family HMM PF01638; hypothetical protein complement(2175478..2175813) Staphylococcus aureus subsp. aureus COL 3237466 YP_186931.1 CDS murAB NC_002951.2 2175902 2177161 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2175902..2177161) Staphylococcus aureus subsp. aureus COL 3237467 YP_186932.1 CDS fbaA NC_002951.2 2177627 2178487 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase complement(2177627..2178487) Staphylococcus aureus subsp. aureus COL 3237468 YP_186933.1 CDS SACOL2118 NC_002951.2 2178705 2179226 D hypothetical protein 2178705..2179226 Staphylococcus aureus subsp. aureus COL 3237469 YP_186934.1 CDS pyrG NC_002951.2 2179335 2180945 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2179335..2180945) Staphylococcus aureus subsp. aureus COL 3237470 YP_186935.1 CDS rpoE NC_002951.2 2181281 2181811 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(2181281..2181811) Staphylococcus aureus subsp. aureus COL 3237471 YP_186936.1 CDS SACOL2121 NC_002951.2 2181923 2182783 R identified by match to protein family HMM PF00583; acetyltransferase complement(2181923..2182783) Staphylococcus aureus subsp. aureus COL 3237472 YP_186937.1 CDS SACOL2122 NC_002951.2 2183207 2184010 D catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A; pantothenate kinase 2183207..2184010 Staphylococcus aureus subsp. aureus COL 3237458 YP_186938.1 CDS SACOL2123 NC_002951.2 2184140 2184811 R identified by similarity to GB:AAO05328.1; hypothetical protein complement(2184140..2184811) Staphylococcus aureus subsp. aureus COL 3237459 YP_186939.1 CDS SACOL2124 NC_002951.2 2185210 2186403 R identified by similarity to GB:AAO05329.1; hypothetical protein complement(2185210..2186403) Staphylococcus aureus subsp. aureus COL 3237460 YP_186940.1 CDS SACOL2125 NC_002951.2 2186403 2187587 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase complement(2186403..2187587) Staphylococcus aureus subsp. aureus COL 3237461 YP_186941.1 CDS luxS NC_002951.2 2187898 2188368 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2187898..2188368 Staphylococcus aureus subsp. aureus COL 3237462 YP_186942.1 CDS SACOL2127 NC_002951.2 2188520 2188870 R hypothetical protein complement(2188520..2188870) Staphylococcus aureus subsp. aureus COL 3237463 YP_186943.1 CDS pdp NC_002951.2 2188884 2190185 R Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase complement(2188884..2190185) Staphylococcus aureus subsp. aureus COL 3237464 YP_186944.1 CDS deoC2 NC_002951.2 2190464 2191126 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(2190464..2191126) Staphylococcus aureus subsp. aureus COL 3237449 YP_186945.1 CDS deoD NC_002951.2 2191441 2192151 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 2191441..2192151 Staphylococcus aureus subsp. aureus COL 3237450 YP_186946.1 CDS SACOL2131 NC_002951.2 2192272 2192715 R identified by match to protein family HMM PF00210; Dps family protein complement(2192272..2192715) Staphylococcus aureus subsp. aureus COL 3237451 YP_186947.1 CDS SACOL2132 NC_002951.2 2192915 2193328 R identified by similarity to GP:10173467; match to protein family HMM PF04134; hypothetical protein complement(2192915..2193328) Staphylococcus aureus subsp. aureus COL 3237452 YP_186948.1 CDS SACOL2133 NC_002951.2 2193786 2195159 R identified by similarity to GB:AAO05339.1; hypothetical protein complement(2193786..2195159) Staphylococcus aureus subsp. aureus COL 3237453 YP_186949.1 CDS SACOL2134 NC_002951.2 2195831 2196061 R identified by similarity to GB:AAO05341.1; hypothetical protein complement(2195831..2196061) Staphylococcus aureus subsp. aureus COL 3237454 YP_186950.1 CDS manA1 NC_002951.2 2196092 2197030 R identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase, class I complement(2196092..2197030) Staphylococcus aureus subsp. aureus COL 3237455 YP_186951.1 CDS SACOL2136 NC_002951.2 2197465 2198130 R hypothetical protein complement(2197465..2198130) Staphylococcus aureus subsp. aureus COL 3237442 YP_186952.1 CDS czrA NC_002951.2 2198282 2198602 D identified by similarity to GP:4126673; similarity to OMNI:SA2137; match to protein family HMM PF01022; transcriptional regulator CzrA 2198282..2198602 Staphylococcus aureus subsp. aureus COL 3237443 YP_186953.1 CDS SACOL2138 NC_002951.2 2198604 2199584 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 2198604..2199584 Staphylococcus aureus subsp. aureus COL 3237444 YP_186954.1 CDS SACOL2139 NC_002951.2 2199794 2199901 D hypothetical protein 2199794..2199901 Staphylococcus aureus subsp. aureus COL 3237445 YP_186955.1 CDS SACOL2142 NC_002951.2 2202166 2203302 R SAP domain-containing protein complement(2202166..2203302) Staphylococcus aureus subsp. aureus COL 3237448 YP_186956.1 CDS SACOL2143 NC_002951.2 2204388 2205257 R identified by similarity to GP:10174364; match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein complement(2204388..2205257) Staphylococcus aureus subsp. aureus COL 3237435 YP_186957.1 CDS SACOL2144 NC_002951.2 2205313 2206095 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2205313..2206095) Staphylococcus aureus subsp. aureus COL 3237436 YP_186958.1 CDS glmS NC_002951.2 2206327 2208132 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(2206327..2208132) Staphylococcus aureus subsp. aureus COL 3237437 YP_186959.1 CDS SACOL2146 NC_002951.2 2208813 2210351 D identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system, mannitol-specific IIBC components 2208813..2210351 Staphylococcus aureus subsp. aureus COL 3237438 YP_186960.1 CDS SACOL2147 NC_002951.2 2210386 2212518 D identified by match to protein family HMM PF00874; BglG family transcriptional antiterminator 2210386..2212518 Staphylococcus aureus subsp. aureus COL 3237439 YP_186961.1 CDS SACOL2148 NC_002951.2 2212530 2212964 D identified by similarity to SP:P17875; match to protein family HMM PF00359; PTS system, mannitol-specific IIA component 2212530..2212964 Staphylococcus aureus subsp. aureus COL 3237440 YP_186962.1 CDS mtlD NC_002951.2 2212964 2214070 D identified by similarity to EGAD:16282; match to protein family HMM PF01232; mannitol-1-phosphate 5-dehydrogenase 2212964..2214070 Staphylococcus aureus subsp. aureus COL 3237441 YP_186963.1 CDS fmtB NC_002951.2 2214389 2221825 R identified by similarity to GP:5834649; match to protein family HMM PF04650; match to protein family HMM PF07564; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fmtB protiein complement(2214389..2221825) Staphylococcus aureus subsp. aureus COL 3237427 YP_186964.1 CDS glmM NC_002951.2 2222102 2223457 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2222102..2223457) Staphylococcus aureus subsp. aureus COL 3237428 YP_186965.1 CDS SACOL2152 NC_002951.2 2223484 2224416 R hypothetical protein complement(2223484..2224416) Staphylococcus aureus subsp. aureus COL 3237429 YP_186966.1 CDS SACOL2153 NC_002951.2 2224418 2225227 R identified by similarity to EGAD:108364; match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(2224418..2225227) Staphylococcus aureus subsp. aureus COL 3237430 YP_186967.1 CDS rocF NC_002951.2 2225416 2226324 R identified by similarity to EGAD:14086; match to protein family HMM PF00491; match to protein family HMM TIGR01229; arginase complement(2225416..2226324) Staphylococcus aureus subsp. aureus COL 3237431 YP_186968.1 CDS SACOL2156 NC_002951.2 2234163 2235227 R ATP-binding Mrp/Nbp35 family protein complement(2234163..2235227) Staphylococcus aureus subsp. aureus COL 3237433 YP_186969.1 CDS SACOL2157 NC_002951.2 2235375 2236817 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(2235375..2236817) Staphylococcus aureus subsp. aureus COL 3237419 YP_186970.1 CDS SACOL2158 NC_002951.2 2237139 2237612 R identified by similarity to GB:AAO05399.1; hypothetical protein complement(2237139..2237612) Staphylococcus aureus subsp. aureus COL 3237420 YP_186971.1 CDS SACOL2159 NC_002951.2 2237711 2239054 R identified by match to protein family HMM PF07690; drug transporter complement(2237711..2239054) Staphylococcus aureus subsp. aureus COL 3237421 YP_186972.1 CDS SACOL2160 NC_002951.2 2239231 2239914 R identified by similarity to EGAD:38000; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(2239231..2239914) Staphylococcus aureus subsp. aureus COL 3237422 YP_186973.1 CDS SACOL2161 NC_002951.2 2239933 2241120 R identified by match to protein family HMM PF01704; UTP-glucose-1-phosphate uridylyltransferase complement(2239933..2241120) Staphylococcus aureus subsp. aureus COL 3237423 YP_186974.1 CDS SACOL2162 NC_002951.2 2241164 2241679 R identified by match to protein family HMM PF04307; hypothetical protein complement(2241164..2241679) Staphylococcus aureus subsp. aureus COL 3237424 YP_186975.1 CDS SACOL2163 NC_002951.2 2241857 2242117 D hypothetical protein 2241857..2242117 Staphylococcus aureus subsp. aureus COL 3237425 YP_186976.1 CDS SACOL2164 NC_002951.2 2242249 2243619 R identified by similarity to GP:10176572; match to protein family HMM PF07670; hypothetical protein complement(2242249..2243619) Staphylococcus aureus subsp. aureus COL 3237426 YP_186977.1 CDS SACOL2165 NC_002951.2 2243855 2244823 R identified by similarity to EGAD:7245; match to protein family HMM PF01032; iron compound ABC transporter permease complement(2243855..2244823) Staphylococcus aureus subsp. aureus COL 3237412 YP_186978.1 CDS SACOL2166 NC_002951.2 2244820 2245851 R identified by similarity to EGAD:23253; match to protein family HMM PF01032; iron compound ABC transporter permease complement(2244820..2245851) Staphylococcus aureus subsp. aureus COL 3237413 YP_186979.1 CDS SACOL2167 NC_002951.2 2245863 2246846 R identified by match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein complement(2245863..2246846) Staphylococcus aureus subsp. aureus COL 3237414 YP_186980.1 CDS SACOL2168 NC_002951.2 2247238 2248308 R identified by match to protein family HMM PF01168; hypothetical protein complement(2247238..2248308) Staphylococcus aureus subsp. aureus COL 3237415 YP_186981.1 CDS SACOL2169 NC_002951.2 2248315 2250072 R identified by match to protein family HMM PF04183; aerobactin biosynthesis protein complement(2248315..2250072) Staphylococcus aureus subsp. aureus COL 3237416 YP_186982.1 CDS SACOL2170 NC_002951.2 2250059 2251252 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; transporter complement(2250059..2251252) Staphylococcus aureus subsp. aureus COL 3237417 YP_186983.1 CDS SACOL2171 NC_002951.2 2251354 2253330 D identified by match to protein family HMM PF04183; aerobactin biosynthesis protein 2251354..2253330 Staphylococcus aureus subsp. aureus COL 3237418 YP_186984.1 CDS SACOL2173 NC_002951.2 2255446 2255955 R identified by similarity to EGAD:40949; match to protein family HMM PF03780; alkaline shock protein 23 complement(2255446..2255955) Staphylococcus aureus subsp. aureus COL 3237405 YP_186985.1 CDS SACOL2174 NC_002951.2 2256018 2256257 R identified by similarity to GB:AAO05416.1; hypothetical protein complement(2256018..2256257) Staphylococcus aureus subsp. aureus COL 3237406 YP_186986.1 CDS SACOL2175 NC_002951.2 2256270 2256818 R identified by similarity to GB:AAO05417.1; hypothetical protein complement(2256270..2256818) Staphylococcus aureus subsp. aureus COL 3237407 YP_186987.1 CDS opuD2 NC_002951.2 2256981 2258543 R identified by similarity to EGAD:45763; match to protein family HMM PF02028; match to protein family HMM TIGR00842; BCCT family osmoprotectant transporter complement(2256981..2258543) Staphylococcus aureus subsp. aureus COL 3237408 YP_186988.1 CDS SACOL2177 NC_002951.2 2258850 2259851 R identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing complement(2258850..2259851) Staphylococcus aureus subsp. aureus COL 3237409 YP_186989.1 CDS SACOL2178 NC_002951.2 2260085 2261086 R identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing complement(2260085..2261086) Staphylococcus aureus subsp. aureus COL 3237410 YP_186990.1 CDS SACOL2179 NC_002951.2 2261369 2262238 R identified by match to protein family HMM PF06028; hypothetical protein complement(2261369..2262238) Staphylococcus aureus subsp. aureus COL 3238416 YP_186991.1 CDS lacG NC_002951.2 2262504 2263916 R catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside; 6-phospho-beta-galactosidase complement(2262504..2263916) Staphylococcus aureus subsp. aureus COL 3238417 YP_186992.1 CDS lacE NC_002951.2 2263934 2265652 R identified by similarity to EGAD:22339; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853; PTS system, lactose-specific IIBC components complement(2263934..2265652) Staphylococcus aureus subsp. aureus COL 3238567 YP_186993.1 CDS lacF NC_002951.2 2265652 2265963 R identified by similarity to EGAD:18801; match to protein family HMM PF02255; match to protein family HMM TIGR00823; PTS system, lactose-specific IIA component complement(2265652..2265963) Staphylococcus aureus subsp. aureus COL 3238568 YP_186994.1 CDS lacD NC_002951.2 2265985 2266965 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(2265985..2266965) Staphylococcus aureus subsp. aureus COL 3238060 YP_186995.1 CDS lacC NC_002951.2 2266969 2267901 R catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP; tagatose-6-phosphate kinase complement(2266969..2267901) Staphylococcus aureus subsp. aureus COL 3238197 YP_186996.1 CDS lacB NC_002951.2 2267914 2268429 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; galactose-6-phosphate isomerase subunit LacB complement(2267914..2268429) Staphylococcus aureus subsp. aureus COL 3238198 YP_186997.1 CDS SACOL2186 NC_002951.2 2268445 2268873 R catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization; galactose-6-phosphate isomerase subunit LacA complement(2268445..2268873) Staphylococcus aureus subsp. aureus COL 3238604 YP_186998.1 CDS SACOL2187 NC_002951.2 2268888 2269004 R hypothetical protein complement(2268888..2269004) Staphylococcus aureus subsp. aureus COL 3238605 YP_186999.1 CDS lacR NC_002951.2 2269241 2269996 R identified by similarity to SP:P16644; match to protein family HMM PF00455; lactose phosphotransferase system repressor complement(2269241..2269996) Staphylococcus aureus subsp. aureus COL 3238563 YP_187000.1 CDS SACOL2189 NC_002951.2 2270247 2270978 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2270247..2270978 Staphylococcus aureus subsp. aureus COL 3238564 YP_187001.1 CDS SACOL2190 NC_002951.2 2271269 2271877 R hypothetical protein complement(2271269..2271877) Staphylococcus aureus subsp. aureus COL 3238090 YP_187002.1 CDS SACOL2191 NC_002951.2 2272139 2272264 R hypothetical protein complement(2272139..2272264) Staphylococcus aureus subsp. aureus COL 3238091 YP_187003.1 CDS SACOL2192 NC_002951.2 2272484 2273332 R identified by match to protein family HMM PF00248; aldo/keto reductase oxidoreductase complement(2272484..2273332) Staphylococcus aureus subsp. aureus COL 3238569 YP_187004.1 CDS SACOL2193 NC_002951.2 2273402 2273818 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2273402..2273818) Staphylococcus aureus subsp. aureus COL 3238570 YP_187005.1 CDS hysA NC_002951.2 2274226 2276649 D identified by similarity to EGAD:42558; match to protein family HMM PF02278; match to protein family HMM PF02884; hyaluronate lyase 2274226..2276649 Staphylococcus aureus subsp. aureus COL 3238658 YP_187006.1 CDS SACOL2195 NC_002951.2 2276709 2277563 R identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein complement(2276709..2277563) Staphylococcus aureus subsp. aureus COL 3238659 YP_187007.1 CDS SACOL2196 NC_002951.2 2277774 2278589 R identified by match to protein family HMM TIGR01484; hypothetical protein complement(2277774..2278589) Staphylococcus aureus subsp. aureus COL 3238068 YP_187008.1 CDS SACOL2197 NC_002951.2 2278883 2279308 D identified by match to protein family HMM PF03642; surface protein 2278883..2279308 Staphylococcus aureus subsp. aureus COL 3238069 YP_187009.1 CDS budA1 NC_002951.2 2279672 2280376 R identified by similarity to EGAD:17067; match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase complement(2279672..2280376) Staphylococcus aureus subsp. aureus COL 3238531 YP_187010.1 CDS budB NC_002951.2 2280413 2282077 R catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase complement(2280413..2282077) Staphylococcus aureus subsp. aureus COL 3238195 YP_187011.1 CDS SACOL2200 NC_002951.2 2282357 2282452 D hypothetical protein 2282357..2282452 Staphylococcus aureus subsp. aureus COL 3238196 YP_187012.1 CDS SACOL2201 NC_002951.2 2283267 2283866 R hypothetical protein complement(2283267..2283866) Staphylococcus aureus subsp. aureus COL 3238496 YP_187013.1 CDS SACOL2202 NC_002951.2 2283899 2284672 R hypothetical protein complement(2283899..2284672) Staphylococcus aureus subsp. aureus COL 3238497 YP_187014.1 CDS SACOL2203 NC_002951.2 2284801 2285937 R ClpA-like protein complement(2284801..2285937) Staphylococcus aureus subsp. aureus COL 3238479 YP_187015.1 CDS SACOL2204 NC_002951.2 2285938 2286729 R hypothetical protein complement(2285938..2286729) Staphylococcus aureus subsp. aureus COL 3238480 YP_187016.1 CDS rpsI NC_002951.2 2288674 2289072 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2288674..2289072) Staphylococcus aureus subsp. aureus COL 3237881 YP_187017.1 CDS rplM NC_002951.2 2289086 2289523 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2289086..2289523) Staphylococcus aureus subsp. aureus COL 3237137 YP_187018.1 CDS truA NC_002951.2 2289763 2290566 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2289763..2290566) Staphylococcus aureus subsp. aureus COL 3237138 YP_187019.1 CDS SACOL2209 NC_002951.2 2290571 2291377 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(2290571..2291377) Staphylococcus aureus subsp. aureus COL 3238696 YP_187020.1 CDS cbiO NC_002951.2 2291367 2292227 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2291367..2292227) Staphylococcus aureus subsp. aureus COL 3238666 YP_187021.1 CDS cbiO NC_002951.2 2292224 2293033 R with CbiNQ forms the ABC transporter for cobalt import; Staphylococcus has two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(2292224..2293033) Staphylococcus aureus subsp. aureus COL 3238667 YP_187022.1 CDS rplQ NC_002951.2 2293571 2293939 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2293571..2293939) Staphylococcus aureus subsp. aureus COL 3238613 YP_187023.1 CDS rpoA NC_002951.2 2293956 2294900 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2293956..2294900) Staphylococcus aureus subsp. aureus COL 3238614 YP_187024.1 CDS rpsK NC_002951.2 2294975 2295364 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2294975..2295364) Staphylococcus aureus subsp. aureus COL 3238374 YP_187025.1 CDS rpsM NC_002951.2 2295388 2295753 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2295388..2295753) Staphylococcus aureus subsp. aureus COL 3238375 YP_187026.1 CDS rpmJ NC_002951.2 2295776 2295889 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(2295776..2295889) Staphylococcus aureus subsp. aureus COL 3237566 YP_187027.1 CDS infA NC_002951.2 2295921 2296139 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2295921..2296139) Staphylococcus aureus subsp. aureus COL 3237567 YP_187028.1 CDS adk NC_002951.2 2296332 2296979 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2296332..2296979) Staphylococcus aureus subsp. aureus COL 3237692 YP_187029.1 CDS secY NC_002951.2 2296996 2298288 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2296996..2298288) Staphylococcus aureus subsp. aureus COL 3237693 YP_187030.1 CDS rplO NC_002951.2 2298288 2298728 R late assembly protein; 50S ribosomal protein L15 complement(2298288..2298728) Staphylococcus aureus subsp. aureus COL 3238662 YP_187031.1 CDS rpmD NC_002951.2 2298745 2298924 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2298745..2298924) Staphylococcus aureus subsp. aureus COL 3238663 YP_187032.1 CDS rpsE NC_002951.2 2298941 2299441 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2298941..2299441) Staphylococcus aureus subsp. aureus COL 3238048 YP_187033.1 CDS rplR NC_002951.2 2299462 2299821 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2299462..2299821) Staphylococcus aureus subsp. aureus COL 3238049 YP_187034.1 CDS rplF NC_002951.2 2299852 2300388 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2299852..2300388) Staphylococcus aureus subsp. aureus COL 3238328 YP_187035.1 CDS rpsH NC_002951.2 2300413 2300811 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2300413..2300811) Staphylococcus aureus subsp. aureus COL 3238329 YP_187036.1 CDS rpsN NC_002951.2 2300843 2301028 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(2300843..2301028) Staphylococcus aureus subsp. aureus COL 3237688 YP_187037.1 CDS rplE NC_002951.2 2301051 2301590 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2301051..2301590) Staphylococcus aureus subsp. aureus COL 3237689 YP_187038.1 CDS rplX NC_002951.2 2301617 2301934 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2301617..2301934) Staphylococcus aureus subsp. aureus COL 3238545 YP_187039.1 CDS rplN NC_002951.2 2301970 2302338 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2301970..2302338) Staphylococcus aureus subsp. aureus COL 3238546 YP_187040.1 CDS rpsQ NC_002951.2 2302370 2302633 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2302370..2302633) Staphylococcus aureus subsp. aureus COL 3237306 YP_187041.1 CDS rpmC NC_002951.2 2302657 2302866 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2302657..2302866) Staphylococcus aureus subsp. aureus COL 3237307 YP_187042.1 CDS rplP NC_002951.2 2302856 2303290 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2302856..2303290) Staphylococcus aureus subsp. aureus COL 3236282 YP_187043.1 CDS rpsC NC_002951.2 2303293 2303946 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2303293..2303946) Staphylococcus aureus subsp. aureus COL 3236283 YP_187044.1 CDS rplV NC_002951.2 2303970 2304323 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2303970..2304323) Staphylococcus aureus subsp. aureus COL 3237286 YP_187045.1 CDS rpsS NC_002951.2 2304352 2304630 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2304352..2304630) Staphylococcus aureus subsp. aureus COL 3237287 YP_187046.1 CDS rplB NC_002951.2 2304697 2305530 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2304697..2305530) Staphylococcus aureus subsp. aureus COL 3237340 YP_187047.1 CDS rplW NC_002951.2 2305563 2305838 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2305563..2305838) Staphylococcus aureus subsp. aureus COL 3237341 YP_187048.1 CDS rplD NC_002951.2 2305838 2306461 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2305838..2306461) Staphylococcus aureus subsp. aureus COL 3237645 YP_187049.2 CDS rplC NC_002951.2 2306488 2307150 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2306488..2307150) Staphylococcus aureus subsp. aureus COL 3237646 YP_187050.1 CDS rpsJ NC_002951.2 2307178 2307486 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2307178..2307486) Staphylococcus aureus subsp. aureus COL 3236278 YP_187051.1 CDS SACOL2241 NC_002951.2 2307843 2308232 D identified by similarity to GB:AAO05467.1; hypothetical protein 2307843..2308232 Staphylococcus aureus subsp. aureus COL 3236279 YP_187052.1 CDS SACOL2242 NC_002951.2 2308424 2309758 R identified by match to protein family HMM PF00860; xanthine/uracil permease complement(2308424..2309758) Staphylococcus aureus subsp. aureus COL 3238467 YP_187053.1 CDS topB NC_002951.2 2309871 2312006 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2309871..2312006) Staphylococcus aureus subsp. aureus COL 3238468 YP_187054.1 CDS SACOL2245 NC_002951.2 2312193 2313080 D identified by match to protein family HMM PF00583; acetyltransferase 2312193..2313080 Staphylococcus aureus subsp. aureus COL 3237163 YP_187055.1 CDS SACOL2246 NC_002951.2 2313261 2314124 D identified by match to protein family HMM PF06800; sugar transporter 2313261..2314124 Staphylococcus aureus subsp. aureus COL 3237164 YP_187056.1 CDS SACOL2247 NC_002951.2 2314241 2314372 R hypothetical protein complement(2314241..2314372) Staphylococcus aureus subsp. aureus COL 3237165 YP_187057.1 CDS SACOL2248 NC_002951.2 2314543 2315451 R identified by match to protein family HMM PF03547; hypothetical protein complement(2314543..2315451) Staphylococcus aureus subsp. aureus COL 3237193 YP_187058.1 CDS SACOL2250 NC_002951.2 2315584 2315748 D hypothetical protein 2315584..2315748 Staphylococcus aureus subsp. aureus COL 3237194 YP_187059.1 CDS SACOL2251 NC_002951.2 2315993 2316310 D identified by similarity to GB:AAO05474.1; hypothetical protein 2315993..2316310 Staphylococcus aureus subsp. aureus COL 3238235 YP_187060.1 CDS SACOL2252 NC_002951.2 2316497 2319664 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein complement(2316497..2319664) Staphylococcus aureus subsp. aureus COL 3238236 YP_187061.1 CDS femX NC_002951.2 2319781 2321046 R identified by match to protein family HMM PF02388; femX protein complement(2319781..2321046) Staphylococcus aureus subsp. aureus COL 3238237 YP_187062.1 CDS SACOL2255 NC_002951.2 2321678 2322442 R identified by similarity to GB:AAO05477.1; hypothetical protein complement(2321678..2322442) Staphylococcus aureus subsp. aureus COL 3237837 YP_187063.1 CDS SACOL2256 NC_002951.2 2322604 2323044 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2322604..2323044 Staphylococcus aureus subsp. aureus COL 3237838 YP_187064.1 CDS SACOL2257 NC_002951.2 2323037 2324248 D identified by match to protein family HMM PF07690; drug transporter 2323037..2324248 Staphylococcus aureus subsp. aureus COL 3238579 YP_187065.1 CDS sarV NC_002951.2 2324350 2324700 R identified by similarity to OMNI:SA2258; match to protein family HMM TIGR01889; hypothetical protein complement(2324350..2324700) Staphylococcus aureus subsp. aureus COL 3238580 YP_187066.1 CDS SACOL2259 NC_002951.2 2324826 2324996 D hypothetical protein 2324826..2324996 Staphylococcus aureus subsp. aureus COL 3236129 YP_187067.1 CDS SACOL2260 NC_002951.2 2325053 2325196 R hypothetical protein complement(2325053..2325196) Staphylococcus aureus subsp. aureus COL 3236130 YP_187068.1 CDS moaA NC_002951.2 2325391 2326413 R identified by similarity to EGAD:15818; match to protein family HMM PF04055; match to protein family HMM PF06463; molybdenum cofactor biosynthesis protein A complement(2325391..2326413) Staphylococcus aureus subsp. aureus COL 3238393 YP_187069.1 CDS mobA NC_002951.2 2326433 2327032 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2326433..2327032) Staphylococcus aureus subsp. aureus COL 3238394 YP_187070.1 CDS moaD NC_002951.2 2327039 2327272 R identified by similarity to GP:3955207; match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor subunit 1 complement(2327039..2327272) Staphylococcus aureus subsp. aureus COL 3238395 YP_187071.1 CDS moaE NC_002951.2 2327278 2327724 R identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdenum cofactor biosynthesis protein E complement(2327278..2327724) Staphylococcus aureus subsp. aureus COL 3237589 YP_187072.1 CDS mobB NC_002951.2 2327738 2328223 R identified by similarity to EGAD:107851; match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B complement(2327738..2328223) Staphylococcus aureus subsp. aureus COL 3237396 YP_187073.1 CDS SACOL2266 NC_002951.2 2328220 2329479 R identified by similarity to GP:3955204; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein complement(2328220..2329479) Staphylococcus aureus subsp. aureus COL 3237397 YP_187074.1 CDS moaC NC_002951.2 2329542 2330036 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2329542..2330036 Staphylococcus aureus subsp. aureus COL 3237398 YP_187075.1 CDS moaB NC_002951.2 2330038 2330544 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor biosynthesis protein B complement(2330038..2330544) Staphylococcus aureus subsp. aureus COL 3237399 YP_187076.1 CDS SACOL2269 NC_002951.2 2330575 2331579 R identified by similarity to GP:3955201; match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis MoeB protein complement(2330575..2331579) Staphylococcus aureus subsp. aureus COL 3237400 YP_187077.1 CDS modC NC_002951.2 2331749 2332354 R identified by match to protein family HMM PF00005; molybdenum ABC transporter ATP-binding protein ModC complement(2331749..2332354) Staphylococcus aureus subsp. aureus COL 3237401 YP_187078.1 CDS modB NC_002951.2 2332355 2333026 R identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdenum ABC transporter permease ModB complement(2332355..2333026) Staphylococcus aureus subsp. aureus COL 3237402 YP_187079.1 CDS modA NC_002951.2 2333040 2333822 R identified by similarity to EGAD:13554; match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter molybdenum-binding protein ModA complement(2333040..2333822) Staphylococcus aureus subsp. aureus COL 3237388 YP_187080.1 CDS fdhD NC_002951.2 2334112 2334909 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 2334112..2334909 Staphylococcus aureus subsp. aureus COL 3237389 YP_187081.1 CDS SACOL2274 NC_002951.2 2335081 2335851 R identified by match to protein family HMM PF00583; acetyltransferase complement(2335081..2335851) Staphylococcus aureus subsp. aureus COL 3237390 YP_187082.1 CDS SACOL2275 NC_002951.2 2335923 2336477 R identified by match to protein family HMM PF02632; BioY family protein complement(2335923..2336477) Staphylococcus aureus subsp. aureus COL 3237391 YP_187083.1 CDS SACOL2276 NC_002951.2 2336598 2337539 R identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase complement(2336598..2337539) Staphylococcus aureus subsp. aureus COL 3237392 YP_187084.1 CDS SACOL2277 NC_002951.2 2337938 2338846 R identified by similarity to EGAD:22102; match to protein family HMM PF01497; iron compound ABC transporter iron compound-binding protein complement(2337938..2338846) Staphylococcus aureus subsp. aureus COL 3237393 YP_187085.1 CDS SACOL2278 NC_002951.2 2339060 2340214 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase-like protein complement(2339060..2340214) Staphylococcus aureus subsp. aureus COL 3237394 YP_187086.1 CDS SACOL2279 NC_002951.2 2340431 2341336 R identified by match to protein family HMM PF03253; transporter complement(2340431..2341336) Staphylococcus aureus subsp. aureus COL 3237395 YP_187087.1 CDS ureA NC_002951.2 2341596 2341898 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 2341596..2341898 Staphylococcus aureus subsp. aureus COL 3237382 YP_187088.1 CDS ureB NC_002951.2 2341912 2342322 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Staphylococcus saprophyticus plays a role in bladder invasiveness and may induce the formation of kidney and bladder stones due to the alkalization of urine; urease subunit beta 2341912..2342322 Staphylococcus aureus subsp. aureus COL 3237383 YP_187089.1 CDS ureC NC_002951.2 2342319 2344034 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 2342319..2344034 Staphylococcus aureus subsp. aureus COL 3237384 YP_187090.1 CDS ureE NC_002951.2 2344047 2344499 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 2344047..2344499 Staphylococcus aureus subsp. aureus COL 3237385 YP_187091.1 CDS ureF NC_002951.2 2344492 2345181 D identified by similarity to EGAD:8726; match to protein family HMM PF01730; urease accessory protein UreF 2344492..2345181 Staphylococcus aureus subsp. aureus COL 3237386 YP_187092.1 CDS ureG NC_002951.2 2345194 2345808 D identified by similarity to EGAD:6421; match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 2345194..2345808 Staphylococcus aureus subsp. aureus COL 3237387 YP_187093.1 CDS ureD NC_002951.2 2345808 2346644 D identified by similarity to EGAD:7142; match to protein family HMM PF01774; urease accessory protein UreD 2345808..2346644 Staphylococcus aureus subsp. aureus COL 3237375 YP_187094.1 CDS sarR NC_002951.2 2346833 2347180 R identified by similarity to OMNI:SA2287; match to protein family HMM TIGR01889; accessory regulator R complement(2346833..2347180) Staphylococcus aureus subsp. aureus COL 3237376 YP_187095.1 CDS SACOL2288 NC_002951.2 2347608 2347934 R hypothetical protein complement(2347608..2347934) Staphylococcus aureus subsp. aureus COL 3237377 YP_187096.1 CDS sarY NC_002951.2 2347998 2348741 R identified by match to protein family HMM TIGR01889; hypothetical protein complement(2347998..2348741) Staphylococcus aureus subsp. aureus COL 3237378 YP_187097.1 CDS SACOL2290 NC_002951.2 2348767 2350722 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(2348767..2350722) Staphylococcus aureus subsp. aureus COL 3237379 YP_187098.1 CDS SACOL2291 NC_002951.2 2351332 2352135 D identified by match to protein family HMM PF05257; staphyloxanthin biosynthesis protein 2351332..2352135 Staphylococcus aureus subsp. aureus COL 3237380 YP_187099.1 CDS nhaC NC_002951.2 2352568 2353968 R identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC complement(2352568..2353968) Staphylococcus aureus subsp. aureus COL 3237381 YP_187100.1 CDS SACOL2293 NC_002951.2 2354063 2355145 R identified by match to protein family HMM PF02317; NAD/NADP octopine/nopaline dehydrogenase complement(2354063..2355145) Staphylococcus aureus subsp. aureus COL 3237365 YP_187101.1 CDS SACOL2294 NC_002951.2 2355393 2355815 D hypothetical protein 2355393..2355815 Staphylococcus aureus subsp. aureus COL 3237366 YP_187102.1 CDS SACOL2295 NC_002951.2 2356052 2356552 D identified by match to protein family HMM PF05257; staphyloxanthin biosynthesis protein 2356052..2356552 Staphylococcus aureus subsp. aureus COL 3237367 YP_187103.1 CDS SACOL2296 NC_002951.2 2356914 2357867 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 2356914..2357867 Staphylococcus aureus subsp. aureus COL 3237368 YP_187104.1 CDS SACOL2297 NC_002951.2 2357959 2359083 R identified by match to protein family HMM PF01360; hypothetical protein complement(2357959..2359083) Staphylococcus aureus subsp. aureus COL 3237369 YP_187105.1 CDS SACOL2298 NC_002951.2 2359394 2360170 R identified by match to protein family HMM PF01832; N-acetylmuramoyl-L-alanine amidase complement(2359394..2360170) Staphylococcus aureus subsp. aureus COL 3237370 YP_187106.1 CDS SACOL2299 NC_002951.2 2360192 2360443 R identified by similarity to GB:AAO05523.1; hypothetical protein complement(2360192..2360443) Staphylococcus aureus subsp. aureus COL 3237371 YP_187107.1 CDS SACOL2300 NC_002951.2 2360653 2361126 R hypothetical protein complement(2360653..2361126) Staphylococcus aureus subsp. aureus COL 3237372 YP_187108.1 CDS SACOL2301 NC_002951.2 2361126 2364080 R identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; formate dehydrogenase subunit alpha complement(2361126..2364080) Staphylococcus aureus subsp. aureus COL 3237357 YP_187109.1 CDS SACOL2302 NC_002951.2 2364682 2365635 R identified by similarity to EGAD:20070; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator complement(2364682..2365635) Staphylococcus aureus subsp. aureus COL 3237358 YP_187110.1 CDS SACOL2303 NC_002951.2 2365762 2366559 R identified by match to protein family HMM PF00459; inositol monophosphatase complement(2365762..2366559) Staphylococcus aureus subsp. aureus COL 3237359 YP_187111.1 CDS SACOL2304 NC_002951.2 2366944 2367636 D hypothetical protein 2366944..2367636 Staphylococcus aureus subsp. aureus COL 3237360 YP_187113.1 CDS SACOL2306 NC_002951.2 2368283 2369020 R identified by similarity to GP:10173173; match to protein family HMM PF02517; hypothetical protein complement(2368283..2369020) Staphylococcus aureus subsp. aureus COL 3237362 YP_187114.1 CDS SACOL2307 NC_002951.2 2369069 2369398 D identified by similarity to GB:AAO05528.1; hypothetical protein 2369069..2369398 Staphylococcus aureus subsp. aureus COL 3237363 YP_187115.1 CDS SACOL2308 NC_002951.2 2369843 2370715 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family phosphosugar-binding transcriptional regulator 2369843..2370715 Staphylococcus aureus subsp. aureus COL 3237590 YP_187116.1 CDS SACOL2309 NC_002951.2 2371102 2372481 R identified by match to protein family HMM PF00324; amino acid permease complement(2371102..2372481) Staphylococcus aureus subsp. aureus COL 3238057 YP_187117.1 CDS SACOL2310 NC_002951.2 2372761 2373117 D identified by similarity to GB:AAO05534.1; hypothetical protein 2372761..2373117 Staphylococcus aureus subsp. aureus COL 3238058 YP_187118.1 CDS SACOL2311 NC_002951.2 2373114 2373299 D hypothetical protein 2373114..2373299 Staphylococcus aureus subsp. aureus COL 3236449 YP_187119.1 CDS SACOL2312 NC_002951.2 2373395 2373586 R hypothetical protein complement(2373395..2373586) Staphylococcus aureus subsp. aureus COL 3236450 YP_187120.1 CDS SACOL2313 NC_002951.2 2373597 2374232 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD superfamily hydrolase complement(2373597..2374232) Staphylococcus aureus subsp. aureus COL 3238157 YP_187121.1 CDS SACOL2314 NC_002951.2 2374307 2375224 R identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein complement(2374307..2375224) Staphylococcus aureus subsp. aureus COL 3238158 YP_187122.1 CDS SACOL2315 NC_002951.2 2375492 2376022 D identified by similarity to GB:AAO05537.1; hypothetical protein 2375492..2376022 Staphylococcus aureus subsp. aureus COL 3238159 YP_187123.1 CDS SACOL2316 NC_002951.2 2376088 2377692 R identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02005; PTS system, IIBC components complement(2376088..2377692) Staphylococcus aureus subsp. aureus COL 3238004 YP_187124.1 CDS SACOL2317 NC_002951.2 2378022 2378786 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; phosphosugar-binding transcriptional regulator 2378022..2378786 Staphylococcus aureus subsp. aureus COL 3238005 YP_187125.1 CDS SACOL2318 NC_002951.2 2378844 2379350 R identified by similarity to GB:AAO05542.1; hypothetical protein complement(2378844..2379350) Staphylococcus aureus subsp. aureus COL 3238010 YP_187126.1 CDS SACOL2319 NC_002951.2 2379517 2380830 R identified by similarity to OMNI:VCA0193; match to protein family HMM PF03553; Na+/H+ antiporter family protein complement(2379517..2380830) Staphylococcus aureus subsp. aureus COL 3238011 YP_187127.1 CDS SACOL2320 NC_002951.2 2381055 2381624 R hypothetical protein complement(2381055..2381624) Staphylococcus aureus subsp. aureus COL 3238012 YP_187128.1 CDS SACOL2321 NC_002951.2 2382111 2382992 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(2382111..2382992) Staphylococcus aureus subsp. aureus COL 3238070 YP_187129.1 CDS SACOL2322 NC_002951.2 2383103 2384224 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20/M25/M40 family peptidase complement(2383103..2384224) Staphylococcus aureus subsp. aureus COL 3238071 YP_187130.1 CDS hutI NC_002951.2 2384501 2385739 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(2384501..2385739) Staphylococcus aureus subsp. aureus COL 3237921 YP_187131.1 CDS hutU NC_002951.2 2385739 2387400 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(2385739..2387400) Staphylococcus aureus subsp. aureus COL 3237922 YP_187132.1 CDS SACOL2325 NC_002951.2 2387560 2388444 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2387560..2388444 Staphylococcus aureus subsp. aureus COL 3238483 YP_187133.1 CDS fosB NC_002951.2 2388866 2389285 D catalyzes resistance to fosfomycin by the addition of a thiol cofactor; fosfomycin resistance protein FosB 2388866..2389285 Staphylococcus aureus subsp. aureus COL 3238484 YP_187134.1 CDS hutG NC_002951.2 2389541 2390476 R catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase complement(2389541..2390476) Staphylococcus aureus subsp. aureus COL 3238442 YP_187135.1 CDS SACOL2328 NC_002951.2 2390766 2392025 D identified by match to protein family HMM PF02517; hypothetical protein 2390766..2392025 Staphylococcus aureus subsp. aureus COL 3238443 YP_187136.1 CDS rpiA NC_002951.2 2392091 2392777 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(2392091..2392777) Staphylococcus aureus subsp. aureus COL 3238444 YP_187137.1 CDS SACOL2330 NC_002951.2 2392951 2393604 D identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 2392951..2393604 Staphylococcus aureus subsp. aureus COL 3238433 YP_187138.1 CDS SACOL2331 NC_002951.2 2393734 2393847 R hypothetical protein complement(2393734..2393847) Staphylococcus aureus subsp. aureus COL 3238434 YP_187139.1 CDS galM NC_002951.2 2393840 2394859 R identified by match to protein family HMM PF01263; aldose 1-epimerase complement(2393840..2394859) Staphylococcus aureus subsp. aureus COL 3237959 YP_187140.1 CDS SACOL2333 NC_002951.2 2394889 2395215 R identified by match to protein family HMM PF02694; hypothetical protein complement(2394889..2395215) Staphylococcus aureus subsp. aureus COL 3237960 YP_187141.1 CDS SACOL2334 NC_002951.2 2395433 2396665 R hypothetical protein complement(2395433..2396665) Staphylococcus aureus subsp. aureus COL 3237269 YP_187142.1 CDS SACOL2335 NC_002951.2 2396658 2397557 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2396658..2397557) Staphylococcus aureus subsp. aureus COL 3237270 YP_187143.1 CDS SACOL2336 NC_002951.2 2397627 2397725 R hypothetical protein complement(2397627..2397725) Staphylococcus aureus subsp. aureus COL 3237271 YP_187144.1 CDS SACOL2338 NC_002951.2 2397788 2398435 R hypothetical protein complement(2397788..2398435) Staphylococcus aureus subsp. aureus COL 3237547 YP_187145.1 CDS SACOL2339 NC_002951.2 2398834 2399442 D identified by similarity to EGAD:99518; match to protein family HMM PF02245; match to protein family HMM TIGR00567; DNA-3-methyladenine glycosylase 2398834..2399442 Staphylococcus aureus subsp. aureus COL 3237548 YP_187146.1 CDS gltS NC_002951.2 2399779 2400987 D identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium:glutamate symporter 2399779..2400987 Staphylococcus aureus subsp. aureus COL 3237549 YP_187147.1 CDS fni NC_002951.2 2401035 2402084 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(2401035..2402084) Staphylococcus aureus subsp. aureus COL 3235996 YP_187148.1 CDS SACOL2342 NC_002951.2 2402115 2403062 R identified by match to protein family HMM PF01544; magnesium and cobalt transport protein CorA complement(2402115..2403062) Staphylococcus aureus subsp. aureus COL 3235997 YP_187149.1 CDS SACOL2343 NC_002951.2 2403159 2403650 D hypothetical protein 2403159..2403650 Staphylococcus aureus subsp. aureus COL 3236039 YP_187150.1 CDS SACOL2344 NC_002951.2 2403647 2404066 D hypothetical protein 2403647..2404066 Staphylococcus aureus subsp. aureus COL 3236040 YP_187151.1 CDS SACOL2345 NC_002951.2 2404174 2405076 R identified by similarity to EGAD:16024; esterase complement(2404174..2405076) Staphylococcus aureus subsp. aureus COL 3236041 YP_187152.1 CDS SACOL2346 NC_002951.2 2405302 2405940 D identified by similarity to GB:AAO05571.1; hypothetical protein 2405302..2405940 Staphylococcus aureus subsp. aureus COL 3237947 YP_187153.1 CDS SACOL2347 NC_002951.2 2406186 2408117 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(2406186..2408117) Staphylococcus aureus subsp. aureus COL 3237948 YP_187154.1 CDS SACOL2348 NC_002951.2 2408130 2408777 R hypothetical protein complement(2408130..2408777) Staphylococcus aureus subsp. aureus COL 3237949 YP_187155.1 CDS SACOL2349 NC_002951.2 2408898 2409449 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2408898..2409449 Staphylococcus aureus subsp. aureus COL 3237705 YP_187156.1 CDS tcaB NC_002951.2 2409679 2410887 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; tcaB protein complement(2409679..2410887) Staphylococcus aureus subsp. aureus COL 3237706 YP_187157.1 CDS SACOL2351 NC_002951.2 2410997 2411125 R hypothetical protein complement(2410997..2411125) Staphylococcus aureus subsp. aureus COL 3236066 YP_187158.1 CDS tcaA NC_002951.2 2411156 2412538 R tcaA protein complement(2411156..2412538) Staphylococcus aureus subsp. aureus COL 3236067 YP_187159.1 CDS tcaR NC_002951.2 2412778 2413233 R identified by match to protein family HMM PF01047; transcriptional regulator TcaR complement(2412778..2413233) Staphylococcus aureus subsp. aureus COL 3236068 YP_187160.1 CDS SACOL2354 NC_002951.2 2413428 2414396 D identified by match to protein family HMM PF02698; hypothetical protein 2413428..2414396 Staphylococcus aureus subsp. aureus COL 3236430 YP_187161.1 CDS SACOL2356 NC_002951.2 2415467 2416132 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2415467..2416132) Staphylococcus aureus subsp. aureus COL 3236570 YP_187162.1 CDS SACOL2357 NC_002951.2 2416132 2417187 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2416132..2417187) Staphylococcus aureus subsp. aureus COL 3236571 YP_187163.1 CDS SACOL2358 NC_002951.2 2417323 2417997 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2417323..2417997 Staphylococcus aureus subsp. aureus COL 3236572 YP_187164.1 CDS SACOL2359 NC_002951.2 2417990 2419363 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2417990..2419363 Staphylococcus aureus subsp. aureus COL 3238332 YP_187165.1 CDS SACOL2360 NC_002951.2 2419526 2419969 D identified by match to protein family HMM PF04397; hypothetical protein 2419526..2419969 Staphylococcus aureus subsp. aureus COL 3238333 YP_187166.1 CDS SACOL2361 NC_002951.2 2419966 2420421 D hypothetical protein 2419966..2420421 Staphylococcus aureus subsp. aureus COL 3238334 YP_187167.1 CDS mqo1 NC_002951.2 2420487 2421965 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2420487..2421965) Staphylococcus aureus subsp. aureus COL 3236601 YP_187168.1 CDS SACOL2363 NC_002951.2 2422346 2423944 R identified by similarity to EGAD:8633; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease complement(2422346..2423944) Staphylococcus aureus subsp. aureus COL 3236602 YP_187169.1 CDS SACOL2364 NC_002951.2 2424261 2425934 D identified by similarity to GB:AAO05587.1; hypothetical protein 2424261..2425934 Staphylococcus aureus subsp. aureus COL 3238202 YP_187170.1 CDS SACOL2365 NC_002951.2 2426087 2426716 R identified by similarity to GB:AAO05588.1; hypothetical protein complement(2426087..2426716) Staphylococcus aureus subsp. aureus COL 3238203 YP_187171.1 CDS SACOL2366 NC_002951.2 2427030 2427545 R identified by match to protein family HMM PF00583; acetyltransferase complement(2427030..2427545) Staphylococcus aureus subsp. aureus COL 3238204 YP_187172.1 CDS SACOL2367 NC_002951.2 2427736 2428740 D identified by match to protein family HMM PF00107; alcohol dehydrogenase, zinc-containing 2427736..2428740 Staphylococcus aureus subsp. aureus COL 3238547 YP_187173.1 CDS SACOL2368 NC_002951.2 2428786 2429187 R identified by match to protein family HMM PF00583; acetyltransferase complement(2428786..2429187) Staphylococcus aureus subsp. aureus COL 3238548 YP_187174.1 CDS SACOL2369 NC_002951.2 2429223 2430257 R identified by match to protein family HMM PF00070; pyridine nucleotide-disulfide oxidoreductase complement(2429223..2430257) Staphylococcus aureus subsp. aureus COL 3238549 YP_187175.1 CDS SACOL2371 NC_002951.2 2430489 2430920 R hypothetical protein complement(2430489..2430920) Staphylococcus aureus subsp. aureus COL 3236146 YP_187176.1 CDS SACOL2372 NC_002951.2 2430972 2431064 D hypothetical protein 2430972..2431064 Staphylococcus aureus subsp. aureus COL 3236147 YP_187177.1 CDS SACOL2373 NC_002951.2 2431127 2432404 R hypothetical protein complement(2431127..2432404) Staphylococcus aureus subsp. aureus COL 3236148 YP_187178.1 CDS SACOL2374 NC_002951.2 2432565 2433188 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2432565..2433188 Staphylococcus aureus subsp. aureus COL 3237262 YP_187179.1 CDS SACOL2375 NC_002951.2 2433234 2434178 D identified by match to protein family HMM PF01544; CorA family protein 2433234..2434178 Staphylococcus aureus subsp. aureus COL 3237263 YP_187180.1 CDS SACOL2376 NC_002951.2 2434264 2435706 R identified by similarity to EGAD:18969; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996; PTS system, sucrose-specific IIBC components complement(2434264..2435706) Staphylococcus aureus subsp. aureus COL 3237264 YP_187181.1 CDS SACOL2377 NC_002951.2 2435889 2436272 D identified by similarity to GB:AAO05601.1; hypothetical protein 2435889..2436272 Staphylococcus aureus subsp. aureus COL 3237626 YP_187182.1 CDS SACOL2378 NC_002951.2 2437760 2439865 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2437760..2439865 Staphylococcus aureus subsp. aureus COL 3237627 YP_187183.1 CDS SACOL2379 NC_002951.2 2439936 2440358 D identified by similarity to EGAD:107318; match to protein family HMM PF01243; hypothetical protein 2439936..2440358 Staphylococcus aureus subsp. aureus COL 3237628 YP_187184.1 CDS SACOL2380 NC_002951.2 2440454 2440576 R hypothetical protein complement(2440454..2440576) Staphylococcus aureus subsp. aureus COL 3238523 YP_187185.1 CDS SACOL2381 NC_002951.2 2440623 2440979 D identified by similarity to GB:AAO05604.1; hypothetical protein 2440623..2440979 Staphylococcus aureus subsp. aureus COL 3238524 YP_187186.1 CDS SACOL2382 NC_002951.2 2441383 2442660 R identified by similarity to EGAD:7647; match to protein family HMM PF00375; proton/sodium-glutamate symport protein complement(2441383..2442660) Staphylococcus aureus subsp. aureus COL 3238525 YP_187187.1 CDS SACOL2383 NC_002951.2 2442842 2443207 R identified by similarity to GB:AAO05606.1; hypothetical protein complement(2442842..2443207) Staphylococcus aureus subsp. aureus COL 3238644 YP_187188.1 CDS sarZ NC_002951.2 2443605 2444051 D identified by match to protein family HMM PF01047; accessory protein Z 2443605..2444051 Staphylococcus aureus subsp. aureus COL 3238645 YP_187189.1 CDS SACOL2385 NC_002951.2 2444267 2444695 D identified by match to protein family HMM PF00011; HSP20 family protein 2444267..2444695 Staphylococcus aureus subsp. aureus COL 3238646 YP_187190.1 CDS SACOL2386 NC_002951.2 2444802 2445971 R identified by similarity to EGAD:30454; match to protein family HMM PF07690; nitrite extrusion protein complement(2444802..2445971) Staphylococcus aureus subsp. aureus COL 3236198 YP_187191.1 CDS SACOL2388 NC_002951.2 2447234 2447974 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2447234..2447974 Staphylococcus aureus subsp. aureus COL 3236205 YP_187192.1 CDS SACOL2389 NC_002951.2 2448232 2448885 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; transcriptional regulatory protein DegU complement(2448232..2448885) Staphylococcus aureus subsp. aureus COL 3236206 YP_187193.1 CDS SACOL2390 NC_002951.2 2448908 2449942 R identified by match to protein family HMM PF02518; sensory box histidine kinase complement(2448908..2449942) Staphylococcus aureus subsp. aureus COL 3236207 YP_187194.1 CDS SACOL2391 NC_002951.2 2449966 2450418 R identified by similarity to GB:AAO05612.1; hypothetical protein complement(2449966..2450418) Staphylococcus aureus subsp. aureus COL 3238246 YP_187195.1 CDS narI NC_002951.2 2450438 2451115 R identified by similarity to EGAD:30704; match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma complement(2450438..2451115) Staphylococcus aureus subsp. aureus COL 3238247 YP_187196.1 CDS narJ NC_002951.2 2451108 2451698 R identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; respiratory nitrate reductase subunit delta complement(2451108..2451698) Staphylococcus aureus subsp. aureus COL 3238248 YP_187197.1 CDS narH NC_002951.2 2451676 2453235 R identified by similarity to EGAD:16236; similarity to EGAD:30703; match to protein family HMM TIGR01660; respiratory nitrate reductase subunit beta complement(2451676..2453235) Staphylococcus aureus subsp. aureus COL 3238628 YP_187198.1 CDS narG NC_002951.2 2453225 2456914 R identified by similarity to EGAD:30702; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; respiratory nitrate reductase subunit alpha complement(2453225..2456914) Staphylococcus aureus subsp. aureus COL 3238629 YP_187199.1 CDS SACOL2396 NC_002951.2 2457224 2458201 R identified by similarity to GP:4433641; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrinogen III methylase SirB complement(2457224..2458201) Staphylococcus aureus subsp. aureus COL 3238630 YP_187200.1 CDS nirD NC_002951.2 2458192 2458506 R identified by similarity to EGAD:30823; match to protein family HMM PF00355; nitrite reductase [NAD(P)H], small subunit complement(2458192..2458506) Staphylococcus aureus subsp. aureus COL 3236579 YP_187201.1 CDS nirB NC_002951.2 2458510 2460915 R identified by similarity to EGAD:30822; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; nitrite reductase [NAD(P)H], large subunit complement(2458510..2460915) Staphylococcus aureus subsp. aureus COL 3236580 YP_187202.1 CDS nirR NC_002951.2 2460981 2461712 R identified by similarity to GP:4433637; transcriptional regulator NirR complement(2460981..2461712) Staphylococcus aureus subsp. aureus COL 3236581 YP_187203.1 CDS SACOL2400 NC_002951.2 2461942 2462478 R identified by match to protein family HMM PF00583; acetyltransferase complement(2461942..2462478) Staphylococcus aureus subsp. aureus COL 3236035 YP_187204.1 CDS SACOL2401 NC_002951.2 2462711 2463535 R identified by match to protein family HMM PF01226; formate/nitrite transporter family protein complement(2462711..2463535) Staphylococcus aureus subsp. aureus COL 3236036 YP_187205.1 CDS SACOL2402 NC_002951.2 2464018 2464485 R identified by similarity to GP:3294247; hypothetical protein complement(2464018..2464485) Staphylococcus aureus subsp. aureus COL 3236037 YP_187206.1 CDS SACOL2403 NC_002951.2 2464671 2466221 R identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein complement(2464671..2466221) Staphylococcus aureus subsp. aureus COL 3236038 YP_187207.1 CDS SACOL2404 NC_002951.2 2466516 2466782 R identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116; addiction module antitoxin complement(2466516..2466782) Staphylococcus aureus subsp. aureus COL 3238588 YP_187208.1 CDS SACOL2405 NC_002951.2 2466782 2467033 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; addiction module antitoxin complement(2466782..2467033) Staphylococcus aureus subsp. aureus COL 3238589 YP_187209.1 CDS SACOL2406 NC_002951.2 2467198 2467296 R hypothetical protein complement(2467198..2467296) Staphylococcus aureus subsp. aureus COL 3238590 YP_187210.1 CDS SACOL2407 NC_002951.2 2467306 2467905 R identified by similarity to EGAD:109043; match to protein family HMM PF01323; lipoprotein complement(2467306..2467905) Staphylococcus aureus subsp. aureus COL 3238591 YP_187211.1 CDS SACOL2408 NC_002951.2 2467924 2468295 R identified by similarity to GB:AAO05629.1; lipoprotein complement(2467924..2468295) Staphylococcus aureus subsp. aureus COL 3238632 YP_187212.1 CDS fmhA NC_002951.2 2468541 2469791 D identified by similarity to GP:4574233; match to protein family HMM PF02388; fmhA protein 2468541..2469791 Staphylococcus aureus subsp. aureus COL 3238633 YP_187213.1 CDS SACOL2410 NC_002951.2 2469888 2470619 R identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(2469888..2470619) Staphylococcus aureus subsp. aureus COL 3238634 YP_187214.1 CDS SACOL2411 NC_002951.2 2470616 2471344 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(2470616..2471344) Staphylococcus aureus subsp. aureus COL 3238153 YP_187215.1 CDS SACOL2412 NC_002951.2 2471316 2472095 R identified by match to protein family HMM PF00497; amino acid ABC transporter amino acid-binding protein complement(2471316..2472095) Staphylococcus aureus subsp. aureus COL 3238154 YP_187216.1 CDS SACOL2413 NC_002951.2 2472216 2473613 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(2472216..2473613) Staphylococcus aureus subsp. aureus COL 3238155 YP_187217.1 CDS SACOL2414 NC_002951.2 2473830 2473934 D identified by similarity to GB:AAO05635.1; hypothetical protein 2473830..2473934 Staphylococcus aureus subsp. aureus COL 3238156 YP_187218.1 CDS gpmA NC_002951.2 2474088 2474774 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(2474088..2474774) Staphylococcus aureus subsp. aureus COL 3238336 YP_187219.1 CDS SACOL2416 NC_002951.2 2475100 2475966 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(2475100..2475966) Staphylococcus aureus subsp. aureus COL 3238337 YP_187220.1 CDS SACOL2418 NC_002951.2 2476718 2478028 D identified by similarity to OMNI:SA2418; match to protein family HMM PF02216; IgG-binding protein SBI 2476718..2478028 Staphylococcus aureus subsp. aureus COL 3238338 YP_187221.1 CDS hlgA NC_002951.2 2478564 2479493 D identified by similarity to OMNI:SA2419; match to protein family HMM PF01117; match to protein family HMM TIGR01002; gamma-hemolysin, component A 2478564..2479493 Staphylococcus aureus subsp. aureus COL 3238445 YP_187222.1 CDS SACOL2420 NC_002951.2 2479557 2479682 D hypothetical protein 2479557..2479682 Staphylococcus aureus subsp. aureus COL 3238446 YP_187223.1 CDS hlgC NC_002951.2 2480061 2481008 D identified by similarity to SP:P31716; match to protein family HMM PF01117; match to protein family HMM TIGR01002; gamma hemolysin, component C 2480061..2481008 Staphylococcus aureus subsp. aureus COL 3238447 YP_187224.1 CDS hlgB NC_002951.2 2481010 2481987 D identified by similarity to SP:P31715; match to protein family HMM PF01117; match to protein family HMM TIGR01002; gamma hemolysin, component B 2481010..2481987 Staphylococcus aureus subsp. aureus COL 3238448 YP_187225.1 CDS SACOL2423 NC_002951.2 2482039 2482506 R identified by similarity to EGAD:19942; hypothetical protein complement(2482039..2482506) Staphylococcus aureus subsp. aureus COL 3238617 YP_187226.1 CDS bioW NC_002951.2 2482517 2483209 R catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase complement(2482517..2483209) Staphylococcus aureus subsp. aureus COL 3238618 YP_187227.1 CDS SACOL2425 NC_002951.2 2483220 2484335 R identified by similarity to EGAD:45705; match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase complement(2483220..2484335) Staphylococcus aureus subsp. aureus COL 3238619 YP_187228.1 CDS bioB NC_002951.2 2484313 2485320 R catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase complement(2484313..2485320) Staphylococcus aureus subsp. aureus COL 3238608 YP_187229.1 CDS bioA NC_002951.2 2485322 2486680 R identified by similarity to EGAD:45704; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2485322..2486680) Staphylococcus aureus subsp. aureus COL 3238609 YP_187230.1 CDS bioD NC_002951.2 2486658 2487344 R identified by similarity to SP:Q58695; match to protein family HMM TIGR00347; dethiobiotin synthase complement(2486658..2487344) Staphylococcus aureus subsp. aureus COL 3238610 YP_187231.1 CDS SACOL2429 NC_002951.2 2487565 2487708 R hypothetical protein complement(2487565..2487708) Staphylococcus aureus subsp. aureus COL 3238689 YP_187232.1 CDS SACOL2430 NC_002951.2 2487796 2489529 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(2487796..2489529) Staphylococcus aureus subsp. aureus COL 3238690 YP_187233.1 CDS SACOL2431 NC_002951.2 2489554 2491317 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(2489554..2491317) Staphylococcus aureus subsp. aureus COL 3238691 YP_187234.1 CDS SACOL2433 NC_002951.2 2491945 2492052 R hypothetical protein complement(2491945..2492052) Staphylococcus aureus subsp. aureus COL 3238692 YP_187235.1 CDS SACOL2434 NC_002951.2 2492187 2492573 R identified by similarity to GP:13162065; match to protein family HMM PF04138; hypothetical protein complement(2492187..2492573) Staphylococcus aureus subsp. aureus COL 3238053 YP_187236.1 CDS SACOL2435 NC_002951.2 2492841 2493983 D identified by similarity to OMNI:NTL01BH0556; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2492841..2493983 Staphylococcus aureus subsp. aureus COL 3238054 YP_187237.1 CDS SACOL2436 NC_002951.2 2494043 2494702 D identified by similarity to GB:AAO05641.1; hypothetical protein 2494043..2494702 Staphylococcus aureus subsp. aureus COL 3237364 YP_187238.1 CDS bcr NC_002951.2 2494884 2496095 D identified by similarity to SP:P28246; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710; bicyclomycin resistance protein 2494884..2496095 Staphylococcus aureus subsp. aureus COL 3237258 YP_187239.1 CDS SACOL2438 NC_002951.2 2496218 2496691 R identified by match to protein family HMM PF06445; hypothetical protein complement(2496218..2496691) Staphylococcus aureus subsp. aureus COL 3237259 YP_187240.1 CDS SACOL2439 NC_002951.2 2496804 2497460 D identified by similarity to GB:AAO05643.1; hypothetical protein 2496804..2497460 Staphylococcus aureus subsp. aureus COL 3237351 YP_187241.1 CDS SACOL2440 NC_002951.2 2497523 2498329 R identified by match to protein family HMM PF00149; hypothetical protein complement(2497523..2498329) Staphylococcus aureus subsp. aureus COL 3237352 YP_187242.1 CDS SACOL2441 NC_002951.2 2498615 2500024 D identified by match to protein family HMM PF00324; amino acid permease 2498615..2500024 Staphylococcus aureus subsp. aureus COL 3237353 YP_187243.1 CDS SACOL2442 NC_002951.2 2500162 2502240 D identified by match to protein family HMM PF00999; Na+/H+ antiporter 2500162..2502240 Staphylococcus aureus subsp. aureus COL 3237354 YP_187244.1 CDS SACOL2443 NC_002951.2 2502380 2504209 R hypothetical protein complement(2502380..2504209) Staphylococcus aureus subsp. aureus COL 3237355 YP_187245.1 CDS SACOL2445 NC_002951.2 2504441 2505937 D identified by similarity to GP:9246437; match to protein family HMM PF00144; fmtA-like protein 2504441..2505937 Staphylococcus aureus subsp. aureus COL 3237356 YP_187246.1 CDS SACOL2446 NC_002951.2 2506029 2506880 R epimerase/dehydratase complement(2506029..2506880) Staphylococcus aureus subsp. aureus COL 3237251 YP_187247.1 CDS SACOL2448 NC_002951.2 2507202 2508137 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(2507202..2508137) Staphylococcus aureus subsp. aureus COL 3237252 YP_187248.1 CDS SACOL2449 NC_002951.2 2508363 2509763 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; drug transporter complement(2508363..2509763) Staphylococcus aureus subsp. aureus COL 3237253 YP_187249.1 CDS SACOL2450 NC_002951.2 2510057 2510752 R identified by match to protein family HMM PF00528; amino acid ABC transporter permease complement(2510057..2510752) Staphylococcus aureus subsp. aureus COL 3237254 YP_187250.1 CDS SACOL2451 NC_002951.2 2510752 2511693 R identified by match to protein family HMM PF04069; amino acid ABC transporter amino acid-binding protein complement(2510752..2511693) Staphylococcus aureus subsp. aureus COL 3237255 YP_187251.1 CDS SACOL2452 NC_002951.2 2511710 2512345 R identified by match to protein family HMM PF00528; amino acid ABC transporter permease complement(2511710..2512345) Staphylococcus aureus subsp. aureus COL 3237256 YP_187252.1 CDS SACOL2453 NC_002951.2 2512342 2513568 R identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; amino acid ABC transporter ATP-binding protein complement(2512342..2513568) Staphylococcus aureus subsp. aureus COL 3237257 YP_187253.1 CDS SACOL2454 NC_002951.2 2513895 2514014 R hypothetical protein complement(2513895..2514014) Staphylococcus aureus subsp. aureus COL 3237243 YP_187254.1 CDS SACOL2456 NC_002951.2 2514238 2514837 R identified by similarity to GP:4514322; hypothetical protein complement(2514238..2514837) Staphylococcus aureus subsp. aureus COL 3237244 YP_187255.1 CDS SACOL2457 NC_002951.2 2514830 2515000 R hypothetical protein complement(2514830..2515000) Staphylococcus aureus subsp. aureus COL 3237245 YP_187256.1 CDS SACOL2458 NC_002951.2 2515017 2516654 D identified by match to protein family HMM PF00324; amino acid permease 2515017..2516654 Staphylococcus aureus subsp. aureus COL 3237246 YP_187257.1 CDS pnbA NC_002951.2 2517262 2518614 D identified by similarity to SP:P37967; match to protein family HMM PF00135; para-nitrobenzyl esterase 2517262..2518614 Staphylococcus aureus subsp. aureus COL 3237247 YP_187258.1 CDS SACOL2460 NC_002951.2 2518676 2519863 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; drug transporter complement(2518676..2519863) Staphylococcus aureus subsp. aureus COL 3237248 YP_187259.1 CDS SACOL2461 NC_002951.2 2520259 2521035 R identified by similarity to SP:P77307; match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein complement(2520259..2521035) Staphylococcus aureus subsp. aureus COL 3237249 YP_187260.1 CDS SACOL2462 NC_002951.2 2521028 2521690 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2521028..2521690) Staphylococcus aureus subsp. aureus COL 3237250 YP_187261.1 CDS pepA2 NC_002951.2 2521938 2523014 R identified by similarity to EGAD:40297; match to protein family HMM PF05343; glutamyl-aminopeptidase complement(2521938..2523014) Staphylococcus aureus subsp. aureus COL 3237234 YP_187262.1 CDS SACOL2464 NC_002951.2 2523369 2523635 R identified by match to protein family HMM TIGR02116; addiction module antitoxin complement(2523369..2523635) Staphylococcus aureus subsp. aureus COL 3237235 YP_187263.1 CDS SACOL2465 NC_002951.2 2523635 2523892 R identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; addiction module antitoxin complement(2523635..2523892) Staphylococcus aureus subsp. aureus COL 3237236 YP_187264.1 CDS SACOL2466 NC_002951.2 2523998 2524192 R hypothetical protein complement(2523998..2524192) Staphylococcus aureus subsp. aureus COL 3237237 YP_187265.1 CDS SACOL2467 NC_002951.2 2524251 2524706 D identified by match to protein family HMM PF06998; lipoprotein 2524251..2524706 Staphylococcus aureus subsp. aureus COL 3237238 YP_187266.1 CDS SACOL2469 NC_002951.2 2524874 2526451 R identified by match to protein family HMM PF01645; glutamate synthase complement(2524874..2526451) Staphylococcus aureus subsp. aureus COL 3237239 YP_187267.1 CDS SACOL2470 NC_002951.2 2526646 2527395 D hypothetical protein 2526646..2527395 Staphylococcus aureus subsp. aureus COL 3237240 YP_187268.1 CDS SACOL2471 NC_002951.2 2527619 2528812 R identified by similarity to GP:10174698; match to protein family HMM PF07690; transporter complement(2527619..2528812) Staphylococcus aureus subsp. aureus COL 3237241 YP_187269.1 CDS SACOL2472 NC_002951.2 2528824 2529573 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(2528824..2529573) Staphylococcus aureus subsp. aureus COL 3237227 YP_187270.1 CDS SACOL2473 NC_002951.2 2529566 2530381 R identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein complement(2529566..2530381) Staphylococcus aureus subsp. aureus COL 3237228 YP_187271.1 CDS SACOL2474 NC_002951.2 2530378 2531247 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(2530378..2531247) Staphylococcus aureus subsp. aureus COL 3237229 YP_187272.1 CDS SACOL2475 NC_002951.2 2531244 2532179 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(2531244..2532179) Staphylococcus aureus subsp. aureus COL 3237230 YP_187273.1 CDS SACOL2476 NC_002951.2 2532192 2533790 R identified by match to protein family HMM PF00496; match to protein family HMM TIGR02294; peptide ABC transporter peptide-binding protein complement(2532192..2533790) Staphylococcus aureus subsp. aureus COL 3237231 YP_187274.1 CDS SACOL2477 NC_002951.2 2533933 2535147 R hypothetical protein complement(2533933..2535147) Staphylococcus aureus subsp. aureus COL 3237232 YP_187275.1 CDS SACOL2478 NC_002951.2 2535227 2536045 R identified by similarity to OMNI:NTL01BH2075; hypothetical protein complement(2535227..2536045) Staphylococcus aureus subsp. aureus COL 3238055 YP_187276.1 CDS SACOL2479 NC_002951.2 2536056 2536877 R identified by similarity to GP:10174690; hypothetical protein complement(2536056..2536877) Staphylococcus aureus subsp. aureus COL 3238056 YP_187277.1 CDS SACOL2480 NC_002951.2 2537025 2537156 R hypothetical protein complement(2537025..2537156) Staphylococcus aureus subsp. aureus COL 3238541 YP_187278.1 CDS SACOL2481 NC_002951.2 2537620 2537985 R hypothetical protein complement(2537620..2537985) Staphylococcus aureus subsp. aureus COL 3238542 YP_187279.1 CDS SACOL2483 NC_002951.2 2539299 2540837 D identified by match to protein family HMM PF03806; transporter 2539299..2540837 Staphylococcus aureus subsp. aureus COL 3238560 YP_187280.1 CDS SACOL2484 NC_002951.2 2540949 2541371 R identified by match to protein family HMM TIGR00778; alkylhydroperoxidase complement(2540949..2541371) Staphylococcus aureus subsp. aureus COL 3238561 YP_187281.1 CDS SACOL2485 NC_002951.2 2541823 2542242 R hypothetical protein complement(2541823..2542242) Staphylococcus aureus subsp. aureus COL 3238562 YP_187282.1 CDS SACOL2486 NC_002951.2 2542260 2542679 R hypothetical protein complement(2542260..2542679) Staphylococcus aureus subsp. aureus COL 3238116 YP_187283.1 CDS SACOL2487 NC_002951.2 2542946 2543368 R identified by similarity to GB:AAO03749.1; match to protein family HMM PF07252; hypothetical protein complement(2542946..2543368) Staphylococcus aureus subsp. aureus COL 3238117 YP_187284.1 CDS SACOL2488 NC_002951.2 2543619 2544314 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(2543619..2544314) Staphylococcus aureus subsp. aureus COL 3238118 YP_187285.1 CDS SACOL2489 NC_002951.2 2544762 2544884 D identified by similarity to GB:AAO05678.1; hypothetical protein 2544762..2544884 Staphylococcus aureus subsp. aureus COL 3238119 YP_187286.1 CDS SACOL2491 NC_002951.2 2545144 2545335 R identified by similarity to GB:AAO05679.1; hypothetical protein complement(2545144..2545335) Staphylococcus aureus subsp. aureus COL 3238313 YP_187287.1 CDS SACOL2492 NC_002951.2 2545770 2545892 D hypothetical protein 2545770..2545892 Staphylococcus aureus subsp. aureus COL 3238314 YP_187288.1 CDS SACOL2493 NC_002951.2 2545896 2546690 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein complement(2545896..2546690) Staphylococcus aureus subsp. aureus COL 3238315 YP_187289.1 CDS SACOL2494 NC_002951.2 2547226 2547513 R hypothetical protein complement(2547226..2547513) Staphylococcus aureus subsp. aureus COL 3238486 YP_187290.1 CDS SACOL2495 NC_002951.2 2547516 2547842 R hypothetical protein complement(2547516..2547842) Staphylococcus aureus subsp. aureus COL 3238487 YP_187291.1 CDS SACOL2496 NC_002951.2 2548054 2549166 R hypothetical protein complement(2548054..2549166) Staphylococcus aureus subsp. aureus COL 3238488 YP_187292.1 CDS SACOL2497 NC_002951.2 2549163 2549948 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein complement(2549163..2549948) Staphylococcus aureus subsp. aureus COL 3238489 YP_187293.1 CDS SACOL2498 NC_002951.2 2550060 2550836 R identified by match to protein family HMM PF04507; match to protein family HMM TIGR01742; hypothetical protein complement(2550060..2550836) Staphylococcus aureus subsp. aureus COL 3238428 YP_187294.1 CDS SACOL2499 NC_002951.2 2551139 2554000 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase complement(2551139..2554000) Staphylococcus aureus subsp. aureus COL 3238429 YP_187295.1 CDS SACOL2500 NC_002951.2 2554002 2554394 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(2554002..2554394) Staphylococcus aureus subsp. aureus COL 3238430 YP_187296.1 CDS SACOL2501 NC_002951.2 2554511 2556319 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 2554511..2556319 Staphylococcus aureus subsp. aureus COL 3238431 YP_187297.1 CDS SACOL2502 NC_002951.2 2556603 2556869 D hypothetical protein 2556603..2556869 Staphylococcus aureus subsp. aureus COL 3238260 YP_187298.1 CDS SACOL2503 NC_002951.2 2557013 2557321 D hypothetical protein 2557013..2557321 Staphylococcus aureus subsp. aureus COL 3238261 YP_187299.1 CDS SACOL2504 NC_002951.2 2557643 2558836 R identified by match to protein family HMM PF07690; permease complement(2557643..2558836) Staphylococcus aureus subsp. aureus COL 3238262 YP_187300.1 CDS SACOL2505 NC_002951.2 2559220 2562951 R identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; cell wall surface anchor family protein complement(2559220..2562951) Staphylococcus aureus subsp. aureus COL 3238095 YP_187301.1 CDS sarT NC_002951.2 2563256 2563612 R identified by match to protein family HMM TIGR01889; accessory regulator T complement(2563256..2563612) Staphylococcus aureus subsp. aureus COL 3238096 YP_187302.1 CDS sarU NC_002951.2 2563936 2564679 D identified by similarity to OMNI:SA2507; match to protein family HMM TIGR01889; accessory regulator U 2563936..2564679 Staphylococcus aureus subsp. aureus COL 3238097 YP_187303.1 CDS galU NC_002951.2 2564890 2565756 R identified by similarity to EGAD:16704; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(2564890..2565756) Staphylococcus aureus subsp. aureus COL 3238061 YP_187304.1 CDS fnbB NC_002951.2 2565936 2568758 R identified by match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fibronectin binding protein B complement(2565936..2568758) Staphylococcus aureus subsp. aureus COL 3238062 YP_187305.1 CDS SACOL2510 NC_002951.2 2568919 2569041 R hypothetical protein complement(2568919..2569041) Staphylococcus aureus subsp. aureus COL 3238063 YP_187306.1 CDS fnbA NC_002951.2 2569440 2572496 R identified by similarity to SP:P14738; match to protein family HMM PF00746; match to protein family HMM PF02986; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; fibronectin-binding protein A complement(2569440..2572496) Staphylococcus aureus subsp. aureus COL 3238064 YP_187307.1 CDS SACOL2513 NC_002951.2 2572738 2572932 R hypothetical protein complement(2572738..2572932) Staphylococcus aureus subsp. aureus COL 3238113 YP_187308.1 CDS gntP NC_002951.2 2572964 2574322 R identified by similarity to EGAD:19179; match to protein family HMM PF02447; match to protein family HMM TIGR00791; gluconate transporter, permease complement(2572964..2574322) Staphylococcus aureus subsp. aureus COL 3238114 YP_187309.1 CDS gntK NC_002951.2 2574439 2575992 R identified by similarity to EGAD:22614; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314; gluconokinase complement(2574439..2575992) Staphylococcus aureus subsp. aureus COL 3238115 YP_187310.1 CDS gntR NC_002951.2 2576016 2576696 R identified by similarity to EGAD:17516; match to protein family HMM PF00392; gluconate operon transcriptional repressor complement(2576016..2576696) Staphylococcus aureus subsp. aureus COL 3238291 YP_187311.1 CDS SACOL2517 NC_002951.2 2576850 2577614 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2576850..2577614) Staphylococcus aureus subsp. aureus COL 3238292 YP_187312.1 CDS SACOL2518 NC_002951.2 2577779 2578471 R identified by similarity to EGAD:14115; match to protein family HMM PF04607; hypothetical protein complement(2577779..2578471) Staphylococcus aureus subsp. aureus COL 3238293 YP_187313.1 CDS SACOL2519 NC_002951.2 2578702 2579190 R hypothetical protein complement(2578702..2579190) Staphylococcus aureus subsp. aureus COL 3238217 YP_187314.1 CDS SACOL2520 NC_002951.2 2579257 2581149 R identified by match to protein family HMM PF05976; hypothetical protein complement(2579257..2581149) Staphylococcus aureus subsp. aureus COL 3238218 YP_187315.1 CDS SACOL2521 NC_002951.2 2581558 2582835 R identified by match to protein family HMM PF07690; transporter complement(2581558..2582835) Staphylococcus aureus subsp. aureus COL 3238219 YP_187316.1 CDS SACOL2522 NC_002951.2 2583382 2583993 D identified by match to protein family HMM PF00597; DedA family protein 2583382..2583993 Staphylococcus aureus subsp. aureus COL 3238220 YP_187317.1 CDS SACOL2523 NC_002951.2 2584090 2585253 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; drug transporter complement(2584090..2585253) Staphylococcus aureus subsp. aureus COL 3238187 YP_187318.1 CDS SACOL2524 NC_002951.2 2585246 2585710 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2585246..2585710) Staphylococcus aureus subsp. aureus COL 3238188 YP_187319.1 CDS SACOL2525 NC_002951.2 2586138 2586833 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2586138..2586833 Staphylococcus aureus subsp. aureus COL 3238189 YP_187320.1 CDS SACOL2527 NC_002951.2 2587978 2589942 D identified by similarity to EGAD:37656; match to protein family HMM PF06874; fructose-1,6-bisphosphatase 2587978..2589942 Staphylococcus aureus subsp. aureus COL 3238402 YP_187321.1 CDS SACOL2528 NC_002951.2 2590286 2591365 D hypothetical protein 2590286..2591365 Staphylococcus aureus subsp. aureus COL 3238403 YP_187322.1 CDS SACOL2529 NC_002951.2 2591470 2592063 R phospholipase/carboxylesterase complement(2591470..2592063) Staphylococcus aureus subsp. aureus COL 3238404 YP_187323.1 CDS SACOL2530 NC_002951.2 2592085 2593053 R identified by similarity to GP:10174794; match to protein family HMM PF00903; hypothetical protein complement(2592085..2593053) Staphylococcus aureus subsp. aureus COL 3238146 YP_187324.1 CDS SACOL2531 NC_002951.2 2593131 2593565 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2593131..2593565) Staphylococcus aureus subsp. aureus COL 3238147 YP_187325.1 CDS SACOL2532 NC_002951.2 2593792 2594076 D acetyltransferase 2593792..2594076 Staphylococcus aureus subsp. aureus COL 3238148 YP_187326.1 CDS SACOL2533 NC_002951.2 2594247 2595053 D identified by match to protein family HMM PF00903; glyoxalase 2594247..2595053 Staphylococcus aureus subsp. aureus COL 3238240 YP_187327.1 CDS frp NC_002951.2 2595173 2595844 R identified by match to protein family HMM PF00881; NAD(P)H-flavin oxidoreductase complement(2595173..2595844) Staphylococcus aureus subsp. aureus COL 3238241 YP_187328.1 CDS SACOL2535 NC_002951.2 2596114 2597106 D catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase 2596114..2597106 Staphylococcus aureus subsp. aureus COL 3238242 YP_187329.1 CDS SACOL2536 NC_002951.2 2597355 2598155 R identified by match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD superfamily hydrolase complement(2597355..2598155) Staphylococcus aureus subsp. aureus COL 3238243 YP_187330.1 CDS SACOL2537 NC_002951.2 2598476 2599111 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2598476..2599111 Staphylococcus aureus subsp. aureus COL 3238305 YP_187331.1 CDS SACOL2538 NC_002951.2 2599117 2599848 D hypothetical protein 2599117..2599848 Staphylococcus aureus subsp. aureus COL 3238306 YP_187332.1 CDS srtA NC_002951.2 2600008 2600628 R identified by similarity to GP:5726436; match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase complement(2600008..2600628) Staphylococcus aureus subsp. aureus COL 3238307 YP_187333.1 CDS SACOL2541 NC_002951.2 2600822 2601313 D identified by match to protein family HMM PF00583; acetyltransferase 2600822..2601313 Staphylococcus aureus subsp. aureus COL 3238678 YP_187334.1 CDS SACOL2542 NC_002951.2 2601751 2601921 R hypothetical protein complement(2601751..2601921) Staphylococcus aureus subsp. aureus COL 3238679 YP_187335.1 CDS SACOL2543 NC_002951.2 2601983 2602081 R hypothetical protein complement(2601983..2602081) Staphylococcus aureus subsp. aureus COL 3238680 YP_187336.1 CDS sdaAA NC_002951.2 2602100 2602999 R identified by similarity to EGAD:154938; match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(2602100..2602999) Staphylococcus aureus subsp. aureus COL 3238681 YP_187337.1 CDS sdaAB NC_002951.2 2603013 2603693 R identified by similarity to SP:P33074; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta complement(2603013..2603693) Staphylococcus aureus subsp. aureus COL 3238286 YP_187338.1 CDS SACOL2546 NC_002951.2 2603696 2604739 R identified by similarity to EGAD:33437; perfringolysin O regulator protein complement(2603696..2604739) Staphylococcus aureus subsp. aureus COL 3238287 YP_187339.1 CDS SACOL2547 NC_002951.2 2605291 2605494 D hypothetical protein 2605291..2605494 Staphylococcus aureus subsp. aureus COL 3238288 YP_187340.1 CDS SACOL2548 NC_002951.2 2605650 2606612 D identified by similarity to GP:10173339; match to protein family HMM PF00892; hypothetical protein 2605650..2606612 Staphylococcus aureus subsp. aureus COL 3238308 YP_187341.1 CDS SACOL2549 NC_002951.2 2606694 2607662 R identified by similarity to EGAD:16024; hypothetical protein complement(2606694..2607662) Staphylococcus aureus subsp. aureus COL 3238309 YP_187342.1 CDS SACOL2550 NC_002951.2 2607795 2608139 R hypothetical protein complement(2607795..2608139) Staphylococcus aureus subsp. aureus COL 3236046 YP_187343.1 CDS SACOL2551 NC_002951.2 2608181 2608591 R identified by similarity to OMNI:VC1938; hypothetical protein complement(2608181..2608591) Staphylococcus aureus subsp. aureus COL 3238310 YP_187344.1 CDS SACOL2552 NC_002951.2 2608971 2611037 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; PTS system, IIABC components complement(2608971..2611037) Staphylococcus aureus subsp. aureus COL 3238311 YP_187345.1 CDS SACOL2553 NC_002951.2 2611338 2613077 R catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase complement(2611338..2613077) Staphylococcus aureus subsp. aureus COL 3238065 YP_187346.1 CDS SACOL2554 NC_002951.2 2613124 2613813 R identified by match to protein family HMM PF04172; hypothetical protein complement(2613124..2613813) Staphylococcus aureus subsp. aureus COL 3238066 YP_187347.1 CDS SACOL2554.1 NC_002951.2 2613806 2614201 R identified by match to protein family HMM PF03788; LrgA family protein complement(2613806..2614201) Staphylococcus aureus subsp. aureus COL 3238067 YP_187348.1 CDS SACOL2555 NC_002951.2 2614414 2615298 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2614414..2615298) Staphylococcus aureus subsp. aureus COL 3238206 YP_187349.1 CDS SACOL2556 NC_002951.2 2615459 2615677 D identified by similarity to GB:AAO05749.1; hypothetical protein 2615459..2615677 Staphylococcus aureus subsp. aureus COL 3238207 YP_187350.1 CDS SACOL2557 NC_002951.2 2616066 2616497 D identified by match to protein family HMM PF05257; hypothetical protein 2616066..2616497 Staphylococcus aureus subsp. aureus COL 3238208 YP_187351.1 CDS SACOL2559 NC_002951.2 2617257 2617514 R hypothetical protein complement(2617257..2617514) Staphylococcus aureus subsp. aureus COL 3238209 YP_187352.1 CDS SACOL2560 NC_002951.2 2618093 2619370 R identified by similarity to EGAD:9852; match to protein family HMM PF00368; match to protein family HMM TIGR00532; hydroxymethylglutaryl-CoA reductase, degradative complement(2618093..2619370) Staphylococcus aureus subsp. aureus COL 3238671 YP_187353.1 CDS SACOL2561 NC_002951.2 2619624 2620790 D identified by similarity to GP:9937361; match to protein family HMM PF01154; match to protein family HMM TIGR01835; hydroxymethylglutaryl-CoA synthase 2619624..2620790 Staphylococcus aureus subsp. aureus COL 3238672 YP_187354.1 CDS ogt NC_002951.2 2620960 2621481 R identified by similarity to EGAD:29038; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase complement(2620960..2621481) Staphylococcus aureus subsp. aureus COL 3238673 YP_187355.1 CDS SACOL2563 NC_002951.2 2621890 2623995 D identified by match to protein family HMM PF00004; match to protein family HMM PF02151; ATP-dependent Clp protease 2621890..2623995 Staphylococcus aureus subsp. aureus COL 3238674 YP_187356.1 CDS feoB NC_002951.2 2624247 2626241 R identified by similarity to EGAD:7439; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B complement(2624247..2626241) Staphylococcus aureus subsp. aureus COL 3237233 YP_187357.1 CDS SACOL2565 NC_002951.2 2626253 2626480 R identified by match to protein family HMM PF04023; FeoA domain-containing protein complement(2626253..2626480) Staphylococcus aureus subsp. aureus COL 3237219 YP_187358.1 CDS SACOL2566 NC_002951.2 2626696 2629185 R identified by match to protein family HMM PF03176; MmpL efflux pump complement(2626696..2629185) Staphylococcus aureus subsp. aureus COL 3237220 YP_187359.1 CDS SACOL2567 NC_002951.2 2629393 2629878 D hypothetical protein 2629393..2629878 Staphylococcus aureus subsp. aureus COL 3237221 YP_187360.1 CDS SACOL2568 NC_002951.2 2629955 2630122 R hypothetical protein complement(2629955..2630122) Staphylococcus aureus subsp. aureus COL 3237222 YP_187361.1 CDS SACOL2569 NC_002951.2 2630234 2631778 R catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase complement(2630234..2631778) Staphylococcus aureus subsp. aureus COL 3237223 YP_187362.1 CDS SACOL2570 NC_002951.2 2631968 2632567 R identified by similarity to EGAD:12452; match to protein family HMM PF00132; galactoside O-acetyltransferase complement(2631968..2632567) Staphylococcus aureus subsp. aureus COL 3237224 YP_187363.1 CDS SACOL2571 NC_002951.2 2632806 2632997 D identified by similarity to GB:AAO05760.1; hypothetical protein 2632806..2632997 Staphylococcus aureus subsp. aureus COL 3237225 YP_187364.1 CDS SACOL2572 NC_002951.2 2633237 2635645 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2633237..2635645 Staphylococcus aureus subsp. aureus COL 3237226 YP_187365.1 CDS SACOL2573 NC_002951.2 2635936 2636142 D identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003; copper ion binding protein 2635936..2636142 Staphylococcus aureus subsp. aureus COL 3237212 YP_187366.1 CDS SACOL2574 NC_002951.2 2636232 2637230 R catalyzes the formation of pyruvate from lactate; D-lactate dehydrogenase complement(2636232..2637230) Staphylococcus aureus subsp. aureus COL 3237213 YP_187367.1 CDS SACOL2575 NC_002951.2 2637253 2638407 R identified by match to protein family HMM PF00155; aminotransferase, class I complement(2637253..2638407) Staphylococcus aureus subsp. aureus COL 3237214 YP_187368.1 CDS crtN NC_002951.2 2638834 2640342 R identified by match to protein family HMM PF01593; squalene synthase complement(2638834..2640342) Staphylococcus aureus subsp. aureus COL 3237215 YP_187369.1 CDS crtM NC_002951.2 2640354 2641217 R identified by similarity to GP:2224841; match to protein family HMM PF00494; dehydrosqualene synthase complement(2640354..2641217) Staphylococcus aureus subsp. aureus COL 3237216 YP_187370.1 CDS SACOL2578 NC_002951.2 2641254 2642390 R identified by match to protein family HMM PF00535; glycosyl transferase, group 2 family protein complement(2641254..2642390) Staphylococcus aureus subsp. aureus COL 3237217 YP_187371.1 CDS SACOL2579 NC_002951.2 2642387 2643880 R identified by similarity to EGAD:16690; match to protein family HMM PF01593; phytoene dehydrogenase complement(2642387..2643880) Staphylococcus aureus subsp. aureus COL 3237218 YP_187372.1 CDS SACOL2580 NC_002951.2 2643873 2644361 R hypothetical protein complement(2643873..2644361) Staphylococcus aureus subsp. aureus COL 3237204 YP_187373.1 CDS SACOL2581 NC_002951.2 2644536 2645303 R identified by match to protein family HMM PF05257; staphyloxanthin biosynthesis protein complement(2644536..2645303) Staphylococcus aureus subsp. aureus COL 3237205 YP_187374.1 CDS SACOL2582 NC_002951.2 2645664 2647475 R identified by match to protein family HMM PF01757; hypothetical protein complement(2645664..2647475) Staphylococcus aureus subsp. aureus COL 3237206 YP_187375.1 CDS SACOL2583 NC_002951.2 2647987 2648475 R identified by match to protein family HMM PF00583; acetyltransferase complement(2647987..2648475) Staphylococcus aureus subsp. aureus COL 3237207 YP_187376.1 CDS isaA NC_002951.2 2648751 2649452 R identified by match to protein family HMM PF06737; immunodominant antigen A complement(2648751..2649452) Staphylococcus aureus subsp. aureus COL 3237208 YP_187377.1 CDS SACOL2585 NC_002951.2 2650060 2651115 R hypothetical protein complement(2650060..2651115) Staphylococcus aureus subsp. aureus COL 3237209 YP_187378.1 CDS SACOL2587 NC_002951.2 2651492 2652094 D hypothetical protein 2651492..2652094 Staphylococcus aureus subsp. aureus COL 3237210 YP_187379.1 CDS SACOL2588 NC_002951.2 2652292 2652792 D hypothetical protein 2652292..2652792 Staphylococcus aureus subsp. aureus COL 3237211 YP_187380.1 CDS SACOL2589 NC_002951.2 2653012 2653242 D identified by match to protein family HMM PF05979; hypothetical protein 2653012..2653242 Staphylococcus aureus subsp. aureus COL 3237196 YP_187381.1 CDS SACOL2590 NC_002951.2 2653392 2653769 R identified by match to protein family HMM PF00903; glyoxalase complement(2653392..2653769) Staphylococcus aureus subsp. aureus COL 3237197 YP_187382.1 CDS SACOL2591 NC_002951.2 2653786 2654607 R identified by similarity to EGAD:19015; hypothetical protein complement(2653786..2654607) Staphylococcus aureus subsp. aureus COL 3237198 YP_187383.1 CDS SACOL2592 NC_002951.2 2654627 2654926 R hypothetical protein complement(2654627..2654926) Staphylococcus aureus subsp. aureus COL 3237199 YP_187384.1 CDS SACOL2593 NC_002951.2 2655057 2655614 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2655057..2655614 Staphylococcus aureus subsp. aureus COL 3237200 YP_187385.1 CDS SACOL2594 NC_002951.2 2655607 2656311 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2655607..2656311 Staphylococcus aureus subsp. aureus COL 3237201 YP_187386.1 CDS SACOL2595 NC_002951.2 2656321 2656428 D hypothetical protein 2656321..2656428 Staphylococcus aureus subsp. aureus COL 3237202 YP_187387.1 CDS SACOL2596 NC_002951.2 2656409 2657419 D identified by match to protein family HMM PF04909; hypothetical protein 2656409..2657419 Staphylococcus aureus subsp. aureus COL 3237203 YP_187388.1 CDS SACOL2597 NC_002951.2 2657439 2658269 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 2657439..2658269 Staphylococcus aureus subsp. aureus COL 3237184 YP_187389.1 CDS SACOL2598 NC_002951.2 2658416 2659306 R identified by similarity to EGAD:156097; match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein complement(2658416..2659306) Staphylococcus aureus subsp. aureus COL 3237185 YP_187390.1 CDS SACOL2599 NC_002951.2 2659404 2660723 R identified by match to protein family HMM PF07670; hypothetical protein complement(2659404..2660723) Staphylococcus aureus subsp. aureus COL 3237186 YP_187391.1 CDS SACOL2600 NC_002951.2 2660738 2661844 R hypothetical protein complement(2660738..2661844) Staphylococcus aureus subsp. aureus COL 3237187 YP_187392.1 CDS SACOL2601 NC_002951.2 2662178 2662474 R identified by similarity to GP:10173595; hypothetical protein complement(2662178..2662474) Staphylococcus aureus subsp. aureus COL 3237188 YP_187393.1 CDS SACOL2602 NC_002951.2 2662462 2662830 R hypothetical protein complement(2662462..2662830) Staphylococcus aureus subsp. aureus COL 3237189 YP_187394.1 CDS SACOL2603 NC_002951.2 2662845 2663123 R hypothetical protein complement(2662845..2663123) Staphylococcus aureus subsp. aureus COL 3237190 YP_187395.1 CDS SACOL2605 NC_002951.2 2663465 2664274 R identified by similarity to GP:22295547; match to protein family HMM PF03881; hypothetical protein complement(2663465..2664274) Staphylococcus aureus subsp. aureus COL 3237191 YP_187396.1 CDS pyrD NC_002951.2 2664549 2665613 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2664549..2665613 Staphylococcus aureus subsp. aureus COL 3237177 YP_187397.1 CDS SACOL2607 NC_002951.2 2665768 2666043 D hypothetical protein 2665768..2666043 Staphylococcus aureus subsp. aureus COL 3237178 YP_187398.1 CDS SACOL2608 NC_002951.2 2666229 2666951 R identified by match to protein family HMM PF02677; hypothetical protein complement(2666229..2666951) Staphylococcus aureus subsp. aureus COL 3237179 YP_187399.1 CDS SACOL2609 NC_002951.2 2667305 2667754 D hypothetical protein 2667305..2667754 Staphylococcus aureus subsp. aureus COL 3237180 YP_187400.1 CDS SACOL2610 NC_002951.2 2667835 2668422 R TetR family transcriptional regulator complement(2667835..2668422) Staphylococcus aureus subsp. aureus COL 3237181 YP_187401.1 CDS SACOL2612 NC_002951.2 2668555 2670237 D identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; CocE/NonD family hydrolase 2668555..2670237 Staphylococcus aureus subsp. aureus COL 3237182 YP_187402.1 CDS panD NC_002951.2 2670366 2670749 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2670366..2670749) Staphylococcus aureus subsp. aureus COL 3237183 YP_187403.1 CDS panC NC_002951.2 2670751 2671602 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2670751..2671602) Staphylococcus aureus subsp. aureus COL 3237170 YP_187404.1 CDS panB NC_002951.2 2671595 2672413 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2671595..2672413) Staphylococcus aureus subsp. aureus COL 3237171 YP_187405.1 CDS SACOL2616 NC_002951.2 2672486 2673346 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2672486..2673346 Staphylococcus aureus subsp. aureus COL 3237172 YP_187406.1 CDS budA2 NC_002951.2 2673432 2674136 R identified by similarity to EGAD:8473; match to protein family HMM PF03306; match to protein family HMM TIGR01252; alpha-acetolactate decarboxylase complement(2673432..2674136) Staphylococcus aureus subsp. aureus COL 3237173 YP_187407.1 CDS ldh2 NC_002951.2 2674414 2675373 R identified by similarity to EGAD:16887; match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase complement(2674414..2675373) Staphylococcus aureus subsp. aureus COL 3237174 YP_187408.1 CDS SACOL2619 NC_002951.2 2676060 2677508 D identified by match to protein family HMM PF00324; amino acid permease 2676060..2677508 Staphylococcus aureus subsp. aureus COL 3237175 YP_187409.1 CDS SACOL2620 NC_002951.2 2677589 2678926 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(2677589..2678926) Staphylococcus aureus subsp. aureus COL 3237176 YP_187410.1 CDS SACOL2621 NC_002951.2 2679184 2679600 D hypothetical protein 2679184..2679600 Staphylococcus aureus subsp. aureus COL 3237072 YP_187411.1 CDS fdaB NC_002951.2 2679723 2680613 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 2679723..2680613 Staphylococcus aureus subsp. aureus COL 3237073 YP_187412.1 CDS mqo2 NC_002951.2 2680806 2682302 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(2680806..2682302) Staphylococcus aureus subsp. aureus COL 3237074 YP_187413.1 CDS SACOL2624 NC_002951.2 2682987 2684585 R identified by similarity to EGAD:18603; match to protein family HMM PF00501; acetyl-CoA synthetase complement(2682987..2684585) Staphylococcus aureus subsp. aureus COL 3237075 YP_187414.1 CDS SACOL2625 NC_002951.2 2684779 2685222 R identified by match to protein family HMM PF03992; hypothetical protein complement(2684779..2685222) Staphylococcus aureus subsp. aureus COL 3237076 YP_187415.1 CDS SACOL2626 NC_002951.2 2685503 2685715 R identified by similarity to GB:AAO05805.1; match to protein family HMM PF06855; hypothetical protein complement(2685503..2685715) Staphylococcus aureus subsp. aureus COL 3237077 YP_187416.1 CDS betA NC_002951.2 2685993 2687702 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2685993..2687702) Staphylococcus aureus subsp. aureus COL 3237169 YP_187417.1 CDS betB NC_002951.2 2687963 2689453 R identified by similarity to EGAD:97843; match to protein family HMM PF00171; match to protein family HMM TIGR01804; betaine aldehyde dehydrogenase complement(2687963..2689453) Staphylococcus aureus subsp. aureus COL 3237065 YP_187418.1 CDS SACOL2629 NC_002951.2 2689522 2689617 D hypothetical protein 2689522..2689617 Staphylococcus aureus subsp. aureus COL 3237066 YP_187419.1 CDS SACOL2630 NC_002951.2 2689706 2690269 D identified by similarity to GP:4574119; hypothetical protein 2689706..2690269 Staphylococcus aureus subsp. aureus COL 3237067 YP_187420.1 CDS SACOL2631 NC_002951.2 2690457 2691143 R hypothetical protein complement(2690457..2691143) Staphylococcus aureus subsp. aureus COL 3237068 YP_187421.1 CDS cudT NC_002951.2 2691407 2693029 R identified by similarity to EGAD:45763; match to protein family HMM PF02028; match to protein family HMM TIGR00842; BCCT family osmoprotectant transporter complement(2691407..2693029) Staphylococcus aureus subsp. aureus COL 3237069 YP_187422.1 CDS nrdG NC_002951.2 2693548 2694084 R identified by similarity to GP:4098082; anaerobic ribonucleoside-triphosphate reductase activating protein complement(2693548..2694084) Staphylococcus aureus subsp. aureus COL 3237070 YP_187423.1 CDS nrdD NC_002951.2 2694081 2695931 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2694081..2695931) Staphylococcus aureus subsp. aureus COL 3237071 YP_187424.1 CDS SACOL2636 NC_002951.2 2696178 2697548 R identified by match to protein family HMM PF03600; match to protein family HMM TIGR00784; citrate transporter, permease complement(2696178..2697548) Staphylococcus aureus subsp. aureus COL 3237057 YP_187425.1 CDS SACOL2637 NC_002951.2 2697870 2697965 R hypothetical protein complement(2697870..2697965) Staphylococcus aureus subsp. aureus COL 3237058 YP_187426.1 CDS SACOL2638 NC_002951.2 2698041 2698646 R catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase complement(2698041..2698646) Staphylococcus aureus subsp. aureus COL 3237059 YP_187427.1 CDS cysJ NC_002951.2 2698709 2700589 R identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; match to protein family HMM TIGR01931; sulfite reductase (NADPH) flavoprotein alpha-component complement(2698709..2700589) Staphylococcus aureus subsp. aureus COL 3237060 YP_187428.1 CDS SACOL2640 NC_002951.2 2700784 2700876 D hypothetical protein 2700784..2700876 Staphylococcus aureus subsp. aureus COL 3237061 YP_187429.1 CDS gpxA2 NC_002951.2 2700984 2701481 R identified by similarity to EGAD:45646; match to protein family HMM PF00255; glutathione peroxidase complement(2700984..2701481) Staphylococcus aureus subsp. aureus COL 3237062 YP_187430.1 CDS SACOL2642 NC_002951.2 2702176 2702289 R hypothetical protein complement(2702176..2702289) Staphylococcus aureus subsp. aureus COL 3237063 YP_187431.1 CDS SACOL2643 NC_002951.2 2702905 2704905 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2702905..2704905) Staphylococcus aureus subsp. aureus COL 3237064 YP_187432.1 CDS SACOL2644 NC_002951.2 2704902 2705666 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2704902..2705666) Staphylococcus aureus subsp. aureus COL 3237047 YP_187433.1 CDS nsaS NC_002951.2 2705765 2706652 R identified by match to protein family HMM PF02518; nisin susceptibility-associated sensor histidine kinase complement(2705765..2706652) Staphylococcus aureus subsp. aureus COL 3237048 YP_187434.1 CDS SACOL2646 NC_002951.2 2706663 2707328 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2706663..2707328) Staphylococcus aureus subsp. aureus COL 3237049 YP_187435.1 CDS SACOL2647 NC_002951.2 2707354 2707554 R hypothetical protein complement(2707354..2707554) Staphylococcus aureus subsp. aureus COL 3237050 YP_187436.1 CDS SACOL2648 NC_002951.2 2707752 2709176 D identified by match to protein family HMM PF00245; alkaline phosphatase 2707752..2709176 Staphylococcus aureus subsp. aureus COL 3237051 YP_187437.1 CDS SACOL2649 NC_002951.2 2709236 2709337 R identified by similarity to GB:AAO05842.1; hypothetical protein complement(2709236..2709337) Staphylococcus aureus subsp. aureus COL 3237052 YP_187438.1 CDS SACOL2650 NC_002951.2 2709459 2709914 R transcriptional regulator complement(2709459..2709914) Staphylococcus aureus subsp. aureus COL 3237053 YP_187439.1 CDS SACOL2651 NC_002951.2 2710159 2710920 R identified by similarity to GP:7453516; similarity to OMNI:NTL01LL1811; match to protein family HMM PF00756; tributyrin esterase EstA complement(2710159..2710920) Staphylococcus aureus subsp. aureus COL 3237054 YP_187440.1 CDS clfB NC_002951.2 2711036 2713777 R identified by similarity to GP:3393011; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; clumping factor B complement(2711036..2713777) Staphylococcus aureus subsp. aureus COL 3237041 YP_187441.1 CDS SACOL2653 NC_002951.2 2714127 2714813 R identified by similarity to GP:8894540; Crp/FNR family transcriptional regulator complement(2714127..2714813) Staphylococcus aureus subsp. aureus COL 3237042 YP_187442.1 CDS arcC2 NC_002951.2 2714930 2715871 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(2714930..2715871) Staphylococcus aureus subsp. aureus COL 3237043 YP_187443.1 CDS arcD NC_002951.2 2715888 2717318 R identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905; arginine/ornithine antiporter complement(2715888..2717318) Staphylococcus aureus subsp. aureus COL 3237044 YP_187444.1 CDS arcB2 NC_002951.2 2717409 2718419 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(2717409..2718419) Staphylococcus aureus subsp. aureus COL 3237045 YP_187445.1 CDS arcA NC_002951.2 2718452 2719687 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(2718452..2719687) Staphylococcus aureus subsp. aureus COL 3237046 YP_187446.1 CDS SACOL2658 NC_002951.2 2720034 2720483 R identified by similarity to EGAD:18464; match to protein family HMM PF02863; ArgR family transcriptional regulator complement(2720034..2720483) Staphylococcus aureus subsp. aureus COL 3237033 YP_187447.1 CDS aur NC_002951.2 2720850 2722379 R identified by similarity to SP:P81177; match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504; zinc metalloproteinase aureolysin complement(2720850..2722379) Staphylococcus aureus subsp. aureus COL 3237034 YP_187448.1 CDS isaB NC_002951.2 2722803 2723330 R immunodominant antigen B complement(2722803..2723330) Staphylococcus aureus subsp. aureus COL 3237035 YP_187449.1 CDS SACOL2661 NC_002951.2 2723588 2724046 D identified by similarity to GB:AAO05863.1; hypothetical protein 2723588..2724046 Staphylococcus aureus subsp. aureus COL 3237036 YP_187450.1 CDS SACOL2662 NC_002951.2 2724286 2726160 D identified by match to protein family HMM PF00359; match to protein family HMM PF00874; BglG family transcriptional antiterminator 2724286..2726160 Staphylococcus aureus subsp. aureus COL 3237037 YP_187451.1 CDS SACOL2663 NC_002951.2 2726237 2728189 D identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427; PTS system, fructose-specific IIABC components 2726237..2728189 Staphylococcus aureus subsp. aureus COL 3237038 YP_187452.1 CDS manA2 NC_002951.2 2728203 2729141 D identified by similarity to EGAD:14340; match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 2728203..2729141 Staphylococcus aureus subsp. aureus COL 3237039 YP_187453.1 CDS SACOL2665 NC_002951.2 2729253 2732234 R identified by match to protein family HMM PF01061; phage infection protein complement(2729253..2732234) Staphylococcus aureus subsp. aureus COL 3237040 YP_187454.1 CDS SACOL2666 NC_002951.2 2732445 2734304 D identified by similarity to EGAD:7341; match to protein family HMM PF01832; match to protein family HMM PF05257; N-acetylmuramoyl-L-alanine amidase 2732445..2734304 Staphylococcus aureus subsp. aureus COL 3237025 YP_187455.1 CDS SACOL2667 NC_002951.2 2734571 2735131 R identified by match to protein family HMM PF00857; isochorismatase complement(2734571..2735131) Staphylococcus aureus subsp. aureus COL 3237026 YP_187456.1 CDS SACOL2668 NC_002951.2 2735299 2737206 R LPXTG cell wall surface anchor family protein complement(2735299..2737206) Staphylococcus aureus subsp. aureus COL 3237027 YP_187457.1 CDS SACOL2669 NC_002951.2 2737448 2738806 R hypothetical protein complement(2737448..2738806) Staphylococcus aureus subsp. aureus COL 3237028 YP_187458.1 CDS SACOL2670 NC_002951.2 2738799 2740307 R identified by match to protein family HMM PF00534; glycosyl transferase, group 1 family protein complement(2738799..2740307) Staphylococcus aureus subsp. aureus COL 3237029 YP_187459.1 CDS SACOL2671 NC_002951.2 2740325 2742715 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(2740325..2742715) Staphylococcus aureus subsp. aureus COL 3237030 YP_187460.1 CDS SACOL2672 NC_002951.2 2742705 2743664 R identified by similarity to GB:AAK17000.1; hypothetical protein complement(2742705..2743664) Staphylococcus aureus subsp. aureus COL 3237031 YP_187461.1 CDS SACOL2673 NC_002951.2 2743642 2745210 R identified by similarity to GB:AAK16999.1; hypothetical protein complement(2743642..2745210) Staphylococcus aureus subsp. aureus COL 3237032 YP_187462.1 CDS SACOL2674 NC_002951.2 2745200 2746753 R identified by similarity to GB:AAK16998.1; accessory secretory protein Asp1 complement(2745200..2746753) Staphylococcus aureus subsp. aureus COL 3237018 YP_187463.1 CDS secY NC_002951.2 2746764 2747975 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2746764..2747975) Staphylococcus aureus subsp. aureus COL 3237019 YP_187464.1 CDS SACOL2676 NC_002951.2 2748105 2754890 R identified by match to protein family HMM PF00746; match to protein family HMM PF05345; match to protein family HMM TIGR01167; LPXTG cell wall surface anchor family protein complement(2748105..2754890) Staphylococcus aureus subsp. aureus COL 3237020 YP_187465.1 CDS SACOL2677 NC_002951.2 2755244 2755354 R hypothetical protein complement(2755244..2755354) Staphylococcus aureus subsp. aureus COL 3237021 YP_187466.1 CDS SACOL2678 NC_002951.2 2755435 2756127 R hypothetical protein complement(2755435..2756127) Staphylococcus aureus subsp. aureus COL 3237022 YP_187467.1 CDS SACOL2680 NC_002951.2 2756808 2757110 D hypothetical protein 2756808..2757110 Staphylococcus aureus subsp. aureus COL 3237023 YP_187468.1 CDS SACOL2681 NC_002951.2 2757264 2757623 D hypothetical protein 2757264..2757623 Staphylococcus aureus subsp. aureus COL 3237024 YP_187469.1 CDS SACOL2682 NC_002951.2 2757708 2758319 R hypothetical protein complement(2757708..2758319) Staphylococcus aureus subsp. aureus COL 3237011 YP_187470.1 CDS SACOL2683 NC_002951.2 2758398 2758874 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae; methionine sulfoxide reductase A complement(2758398..2758874) Staphylococcus aureus subsp. aureus COL 3237012 YP_187471.1 CDS SACOL2684 NC_002951.2 2758877 2759377 R identified by match to protein family HMM PF00583; acetyltransferase complement(2758877..2759377) Staphylococcus aureus subsp. aureus COL 3237013 YP_187472.1 CDS cap1C NC_002951.2 2759612 2760379 R identified by match to protein family HMM PF02811; capsular polysaccharide biosynthesis protein Cap1C complement(2759612..2760379) Staphylococcus aureus subsp. aureus COL 3237014 YP_187473.1 CDS cap1B NC_002951.2 2760376 2761068 R identified by similarity to EGAD:13148; match to protein family HMM TIGR01007; capsular polysaccharide biosynthesis protein Cap1B complement(2760376..2761068) Staphylococcus aureus subsp. aureus COL 3237015 YP_187474.1 CDS cap1A NC_002951.2 2761085 2761747 R identified by match to protein family HMM PF02706; capsular polysaccharide biosynthesis protein Cap1A complement(2761085..2761747) Staphylococcus aureus subsp. aureus COL 3237016 YP_187475.1 CDS icaR NC_002951.2 2762596 2763156 R identified by similarity to GP:5813900; similarity to OMNI:SA2688; match to protein family HMM PF00440; intercellular adhesion regulator complement(2762596..2763156) Staphylococcus aureus subsp. aureus COL 3237017 YP_187476.1 CDS icaA NC_002951.2 2763320 2764558 D predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 2763320..2764558 Staphylococcus aureus subsp. aureus COL 3237003 YP_187477.1 CDS icaD NC_002951.2 2764522 2764827 D intercellular adhesion protein D 2764522..2764827 Staphylococcus aureus subsp. aureus COL 3238686 YP_187478.1 CDS icaB NC_002951.2 2764824 2765702 D identified by match to protein family HMM PF01522; intercellular adhesion protein B 2764824..2765702 Staphylococcus aureus subsp. aureus COL 3238687 YP_187479.1 CDS SACOL2693 NC_002951.2 2767032 2767097 R hypothetical protein complement(2767032..2767097) Staphylococcus aureus subsp. aureus COL 3237117 YP_187480.1 CDS geh NC_002951.2 2767125 2769167 R identified by similarity to SP:Q02510; similarity to EGAD:17843; match to protein family HMM PF04650; match to protein family HMM TIGR01168; lipase complement(2767125..2769167) Staphylococcus aureus subsp. aureus COL 3238361 YP_187481.1 CDS SACOL2695 NC_002951.2 2769888 2770100 R hypothetical protein complement(2769888..2770100) Staphylococcus aureus subsp. aureus COL 3238362 YP_187482.1 CDS hisI NC_002951.2 2770260 2770892 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP complement(2770260..2770892) Staphylococcus aureus subsp. aureus COL 3238363 YP_187483.1 CDS hisF NC_002951.2 2770889 2771647 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2770889..2771647) Staphylococcus aureus subsp. aureus COL 3238650 YP_187484.1 CDS hisA NC_002951.2 2771644 2772348 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2771644..2772348) Staphylococcus aureus subsp. aureus COL 3238651 YP_187485.1 CDS hisH NC_002951.2 2772341 2772919 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2772341..2772919) Staphylococcus aureus subsp. aureus COL 3238652 YP_187486.1 CDS hisB NC_002951.2 2772916 2773494 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(2772916..2773494) Staphylococcus aureus subsp. aureus COL 3238668 YP_187487.1 CDS SACOL2701 NC_002951.2 2773463 2774476 R identified by match to protein family HMM PF00155; histidinol-phosphate aminotransferase complement(2773463..2774476) Staphylococcus aureus subsp. aureus COL 3238669 YP_187488.1 CDS hisD NC_002951.2 2774492 2775748 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2774492..2775748) Staphylococcus aureus subsp. aureus COL 3238670 YP_187489.1 CDS hisG NC_002951.2 2775735 2776349 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(2775735..2776349) Staphylococcus aureus subsp. aureus COL 3238449 YP_187490.1 CDS hisZ NC_002951.2 2776367 2777185 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(2776367..2777185) Staphylococcus aureus subsp. aureus COL 3238450 YP_187491.1 CDS SACOL2705 NC_002951.2 2777490 2778614 R hypothetical protein complement(2777490..2778614) Staphylococcus aureus subsp. aureus COL 3238451 YP_187492.1 CDS SACOL2706 NC_002951.2 2778732 2779229 R hypothetical protein complement(2778732..2779229) Staphylococcus aureus subsp. aureus COL 3238452 YP_187493.1 CDS SACOL2707 NC_002951.2 2779276 2780109 R identified by match to protein family HMM PF02361; cobalt transport family protein complement(2779276..2780109) Staphylococcus aureus subsp. aureus COL 3238438 YP_187494.1 CDS SACOL2708 NC_002951.2 2780106 2781818 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2780106..2781818) Staphylococcus aureus subsp. aureus COL 3238439 YP_187495.1 CDS SACOL2709 NC_002951.2 2781871 2782425 R identified by match to protein family HMM PF07155; hypothetical protein complement(2781871..2782425) Staphylococcus aureus subsp. aureus COL 3238440 YP_187496.1 CDS SACOL2710 NC_002951.2 2782454 2783302 R identified by similarity to EGAD:167429; match to protein family HMM PF01887; hypothetical protein complement(2782454..2783302) Staphylococcus aureus subsp. aureus COL 3238075 YP_187497.1 CDS SACOL2711 NC_002951.2 2783682 2784197 D identified by match to protein family HMM PF04264; hypothetical protein 2783682..2784197 Staphylococcus aureus subsp. aureus COL 3238076 YP_187498.1 CDS drp35 NC_002951.2 2784346 2785317 R identified by similarity to GP:6441050; drP35 protein complement(2784346..2785317) Staphylococcus aureus subsp. aureus COL 3238077 YP_187499.1 CDS SACOL2713 NC_002951.2 2785561 2786517 D identified by match to protein family HMM PF00581; hypothetical protein 2785561..2786517 Staphylococcus aureus subsp. aureus COL 3238078 YP_187500.1 CDS pcp NC_002951.2 2786669 2787307 D catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline; pyrrolidone-carboxylate peptidase 2786669..2787307 Staphylococcus aureus subsp. aureus COL 3238254 YP_187501.1 CDS SACOL2715 NC_002951.2 2787426 2788193 R hypothetical protein complement(2787426..2788193) Staphylococcus aureus subsp. aureus COL 3238255 YP_187502.1 CDS SACOL2716 NC_002951.2 2788183 2788521 R identified by match to protein family HMM PF03551; hypothetical protein complement(2788183..2788521) Staphylococcus aureus subsp. aureus COL 3238256 YP_187503.1 CDS SACOL2717 NC_002951.2 2788688 2789152 D hypothetical protein 2788688..2789152 Staphylococcus aureus subsp. aureus COL 3238654 YP_187504.1 CDS SACOL2718 NC_002951.2 2789390 2790808 D identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 2789390..2790808 Staphylococcus aureus subsp. aureus COL 3238655 YP_187505.1 CDS rarD NC_002951.2 2791221 2792129 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; rarD protein complement(2791221..2792129) Staphylococcus aureus subsp. aureus COL 3238656 YP_187506.1 CDS SACOL2720 NC_002951.2 2792354 2792929 D hypothetical protein 2792354..2792929 Staphylococcus aureus subsp. aureus COL 3238657 YP_187507.1 CDS nixA NC_002951.2 2793058 2794110 D identified by similarity to EGAD:33273; match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel-transport protein 2793058..2794110 Staphylococcus aureus subsp. aureus COL 3237622 YP_187508.1 CDS SACOL2722 NC_002951.2 2794353 2795147 D identified by match to protein family HMM PF00797; N-acetyltransferase 2794353..2795147 Staphylococcus aureus subsp. aureus COL 3237623 YP_187509.1 CDS SACOL2723 NC_002951.2 2795281 2795793 R hypothetical protein complement(2795281..2795793) Staphylococcus aureus subsp. aureus COL 3237624 YP_187510.1 CDS SACOL2724 NC_002951.2 2796076 2796834 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2796076..2796834 Staphylococcus aureus subsp. aureus COL 3237625 YP_187511.1 CDS SACOL2725 NC_002951.2 2796824 2798704 D identified by match to protein family HMM PF02687; ABC transporter permease 2796824..2798704 Staphylococcus aureus subsp. aureus COL 3236848 YP_187512.1 CDS SACOL2726 NC_002951.2 2798797 2798988 D hypothetical protein 2798797..2798988 Staphylococcus aureus subsp. aureus COL 3236849 YP_187513.1 CDS SACOL2727 NC_002951.2 2799000 2799536 D identified by match to protein family HMM PF00665; integrase/recombinase core subunit 2799000..2799536 Staphylococcus aureus subsp. aureus COL 3236850 YP_187514.1 CDS SACOL2728 NC_002951.2 2799596 2800093 R hypothetical protein complement(2799596..2800093) Staphylococcus aureus subsp. aureus COL 3236851 YP_187515.1 CDS SACOL2729 NC_002951.2 2800172 2800522 D integrase/recombinase core subunit 2800172..2800522 Staphylococcus aureus subsp. aureus COL 3238396 YP_187516.1 CDS SACOL2730 NC_002951.2 2800551 2800742 D hypothetical protein 2800551..2800742 Staphylococcus aureus subsp. aureus COL 3238397 YP_187517.1 CDS SACOL2731 NC_002951.2 2801135 2801335 D identified by match to protein family HMM PF00313; CSD family cold shock protein 2801135..2801335 Staphylococcus aureus subsp. aureus COL 3238398 YP_187518.1 CDS SACOL2732 NC_002951.2 2801462 2802031 R identified by match to protein family HMM PF01381; transcriptional regulator complement(2801462..2802031) Staphylococcus aureus subsp. aureus COL 3238399 YP_187519.1 CDS SACOL2733 NC_002951.2 2802291 2802671 R identified by similarity to GB:AAO06054.1; hypothetical protein complement(2802291..2802671) Staphylococcus aureus subsp. aureus COL 3236122 YP_187520.1 CDS SACOL2734 NC_002951.2 2802754 2803107 R identified by similarity to GB:AAO06055.1; hypothetical protein complement(2802754..2803107) Staphylococcus aureus subsp. aureus COL 3236123 YP_187521.1 CDS SACOL2735 NC_002951.2 2803561 2804400 R identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; ParB family chromosome partioning protein complement(2803561..2804400) Staphylococcus aureus subsp. aureus COL 3236124 YP_187522.1 CDS gidB NC_002951.2 2804443 2805162 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(2804443..2805162) Staphylococcus aureus subsp. aureus COL 3236125 YP_187523.1 CDS gidA NC_002951.2 2805162 2807039 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(2805162..2807039) Staphylococcus aureus subsp. aureus COL 3236264 YP_187524.1 CDS trmE NC_002951.2 2807106 2808485 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2807106..2808485) Staphylococcus aureus subsp. aureus COL 3236265 YP_187525.1 CDS rnpA NC_002951.2 2808624 2808971 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(2808624..2808971) Staphylococcus aureus subsp. aureus COL 3236266 YP_187526.1 CDS rpmH NC_002951.2 2809098 2809235 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(2809098..2809235) Staphylococcus aureus subsp. aureus COL 3236024 YP_184747.1 CDS repC NC_006629.2 32 976 D identified by similarity to EGAD:10909; match to protein family HMM PF02486; replication initiation protein 32..976 Staphylococcus aureus subsp. aureus COL 3237996 YP_184748.1 CDS tet NC_006629.2 1138 2517 D identified by similarity to EGAD:6626; match to protein family HMM PF07690; tetracycline resistance protein 1138..2517 Staphylococcus aureus subsp. aureus COL 3237997 YP_184749.1 CDS pre NC_006629.2 2703 3944 D identified by similarity to EGAD:21785; match to protein family HMM PF01076; plasmid recombination enzyme 2703..3944 Staphylococcus aureus subsp. aureus COL 3237995 SACOL_tRNA-Glu-1 tRNA SACOL_tRNA-Glu-1 NC_002951.2 24178 24252 D tRNA-Glu 24178..24252 Staphylococcus aureus subsp. aureus COL 3236343 SACOL_tRNA-Asp-1 tRNA SACOL_tRNA-Asp-1 NC_002951.2 24260 24332 D tRNA-Asp 24260..24332 Staphylococcus aureus subsp. aureus COL 3236345 SACOL_tRNA-Ser-1 tRNA SACOL_tRNA-Ser-1 NC_002951.2 519907 519999 D tRNA-Ser 519907..519999 Staphylococcus aureus subsp. aureus COL 3236311 SACOL_tRNA-Ala-1 tRNA SACOL_tRNA-Ala-1 NC_002951.2 572579 572654 D tRNA-Ala 572579..572654 Staphylococcus aureus subsp. aureus COL 3236445 SACOL_tRNA-Ile-1 tRNA SACOL_tRNA-Ile-1 NC_002951.2 574423 574499 D tRNA-Ile 574423..574499 Staphylococcus aureus subsp. aureus COL 3236334 SACOL_tRNA-Arg-1 tRNA SACOL_tRNA-Arg-1 NC_002951.2 859693 859764 R tRNA-Arg complement(859693..859764) Staphylococcus aureus subsp. aureus COL 3236448 SACOL_tRNA-Ser-2 tRNA SACOL_tRNA-Ser-2 NC_002951.2 1042233 1042321 R tRNA-Ser complement(1042233..1042321) Staphylococcus aureus subsp. aureus COL 3236312 SACOL_tRNA-Asn-1 tRNA SACOL_tRNA-Asn-1 NC_002951.2 1042324 1042398 R tRNA-Asn complement(1042324..1042398) Staphylococcus aureus subsp. aureus COL 3236442 SACOL_tRNA-Arg-2 tRNA SACOL_tRNA-Arg-2 NC_002951.2 1191780 1191853 R tRNA-Arg complement(1191780..1191853) Staphylococcus aureus subsp. aureus COL 3236349 SACOL_tRNA-Ser-3 tRNA SACOL_tRNA-Ser-3 NC_002951.2 1939974 1940062 R tRNA-Ser complement(1939974..1940062) Staphylococcus aureus subsp. aureus COL 3236313 SACOL_tRNA-Glu-2 tRNA SACOL_tRNA-Glu-2 NC_002951.2 1940117 1940188 R tRNA-Glu complement(1940117..1940188) Staphylococcus aureus subsp. aureus COL 3236335 SACOL_tRNA-Asn-2 tRNA SACOL_tRNA-Asn-2 NC_002951.2 1940190 1940264 R tRNA-Asn complement(1940190..1940264) Staphylococcus aureus subsp. aureus COL 3236443 SACOL_tRNA-Gly-1 tRNA SACOL_tRNA-Gly-1 NC_002951.2 1940279 1940352 R tRNA-Gly complement(1940279..1940352) Staphylococcus aureus subsp. aureus COL 3236337 SACOL_tRNA-His-1 tRNA SACOL_tRNA-His-1 NC_002951.2 1940368 1940443 R tRNA-His complement(1940368..1940443) Staphylococcus aureus subsp. aureus COL 3236332 SACOL_tRNA-Phe-1 tRNA SACOL_tRNA-Phe-1 NC_002951.2 1940457 1940529 R tRNA-Phe complement(1940457..1940529) Staphylococcus aureus subsp. aureus COL 3236316 SACOL_tRNA-Asp-2 tRNA SACOL_tRNA-Asp-2 NC_002951.2 1940546 1940621 R tRNA-Asp complement(1940546..1940621) Staphylococcus aureus subsp. aureus COL 3236346 SACOL_tRNA-Met-1 tRNA SACOL_tRNA-Met-1 NC_002951.2 1940643 1940716 R tRNA-Met complement(1940643..1940716) Staphylococcus aureus subsp. aureus COL 3236322 SACOL_tRNA-Leu-1 tRNA SACOL_tRNA-Leu-1 NC_002951.2 1974497 1974580 R tRNA-Leu complement(1974497..1974580) Staphylococcus aureus subsp. aureus COL 3236325 SACOL_tRNA-Gly-2 tRNA SACOL_tRNA-Gly-2 NC_002951.2 1974797 1974871 R tRNA-Gly complement(1974797..1974871) Staphylococcus aureus subsp. aureus COL 3236338 SACOL_tRNA-Cys-1 tRNA SACOL_tRNA-Cys-1 NC_002951.2 1974879 1974952 R tRNA-Cys complement(1974879..1974952) Staphylococcus aureus subsp. aureus COL 3236340 SACOL_tRNA-Gln-1 tRNA SACOL_tRNA-Gln-1 NC_002951.2 1974958 1975029 R tRNA-Gln complement(1974958..1975029) Staphylococcus aureus subsp. aureus COL 3236341 SACOL_tRNA-His-2 tRNA SACOL_tRNA-His-2 NC_002951.2 1975041 1975113 R tRNA-His complement(1975041..1975113) Staphylococcus aureus subsp. aureus COL 3236333 SACOL_tRNA-Trp-1 tRNA SACOL_tRNA-Trp-1 NC_002951.2 1975116 1975189 R tRNA-Trp complement(1975116..1975189) Staphylococcus aureus subsp. aureus COL 3236309 SACOL_tRNA-Tyr-1 tRNA SACOL_tRNA-Tyr-1 NC_002951.2 1975205 1975285 R tRNA-Tyr complement(1975205..1975285) Staphylococcus aureus subsp. aureus COL 3236301 SACOL_tRNA-Thr-1 tRNA SACOL_tRNA-Thr-1 NC_002951.2 1975291 1975366 R tRNA-Thr complement(1975291..1975366) Staphylococcus aureus subsp. aureus COL 3236307 SACOL_tRNA-Phe-2 tRNA SACOL_tRNA-Phe-2 NC_002951.2 1975374 1975446 R tRNA-Phe complement(1975374..1975446) Staphylococcus aureus subsp. aureus COL 3236317 SACOL_tRNA-Asp-3 tRNA SACOL_tRNA-Asp-3 NC_002951.2 1975465 1975540 R tRNA-Asp complement(1975465..1975540) Staphylococcus aureus subsp. aureus COL 3236347 SACOL_tRNA-Met-2 tRNA SACOL_tRNA-Met-2 NC_002951.2 1975550 1975623 R tRNA-Met complement(1975550..1975623) Staphylococcus aureus subsp. aureus COL 3236323 SACOL_tRNA-Ser-4 tRNA SACOL_tRNA-Ser-4 NC_002951.2 1975638 1975730 R tRNA-Ser complement(1975638..1975730) Staphylococcus aureus subsp. aureus COL 3236305 SACOL_tRNA-Asp-4 tRNA SACOL_tRNA-Asp-4 NC_002951.2 1975769 1975844 R tRNA-Asp complement(1975769..1975844) Staphylococcus aureus subsp. aureus COL 3236348 SACOL_tRNA-Ser-5 tRNA SACOL_tRNA-Ser-5 NC_002951.2 1975855 1975944 R tRNA-Ser complement(1975855..1975944) Staphylococcus aureus subsp. aureus COL 3236306 SACOL_tRNA-Met-3 tRNA SACOL_tRNA-Met-3 NC_002951.2 1975954 1976027 R tRNA-Met complement(1975954..1976027) Staphylococcus aureus subsp. aureus COL 3236314 SACOL_tRNA-Met-4 tRNA SACOL_tRNA-Met-4 NC_002951.2 1976053 1976129 R tRNA-Met complement(1976053..1976129) Staphylococcus aureus subsp. aureus COL 3236315 SACOL_tRNA-Ala-2 tRNA SACOL_tRNA-Ala-2 NC_002951.2 1976151 1976226 R tRNA-Ala complement(1976151..1976226) Staphylococcus aureus subsp. aureus COL 3236446 SACOL_tRNA-Pro-1 tRNA SACOL_tRNA-Pro-1 NC_002951.2 1976244 1976317 R tRNA-Pro complement(1976244..1976317) Staphylococcus aureus subsp. aureus COL 3236318 SACOL_tRNA-Arg-3 tRNA SACOL_tRNA-Arg-3 NC_002951.2 1976327 1976400 R tRNA-Arg complement(1976327..1976400) Staphylococcus aureus subsp. aureus COL 3236441 SACOL_tRNA-Leu-2 tRNA SACOL_tRNA-Leu-2 NC_002951.2 1976419 1976507 R tRNA-Leu complement(1976419..1976507) Staphylococcus aureus subsp. aureus COL 3236326 SACOL_tRNA-Gly-3 tRNA SACOL_tRNA-Gly-3 NC_002951.2 1976518 1976592 R tRNA-Gly complement(1976518..1976592) Staphylococcus aureus subsp. aureus COL 3236339 SACOL_tRNA-Leu-3 tRNA SACOL_tRNA-Leu-3 NC_002951.2 1976596 1976677 R tRNA-Leu complement(1976596..1976677) Staphylococcus aureus subsp. aureus COL 3236327 SACOL_tRNA-Lys-1 tRNA SACOL_tRNA-Lys-1 NC_002951.2 1976681 1976756 R tRNA-Lys complement(1976681..1976756) Staphylococcus aureus subsp. aureus COL 3236320 SACOL_tRNA-Thr-2 tRNA SACOL_tRNA-Thr-2 NC_002951.2 1976762 1976837 R tRNA-Thr complement(1976762..1976837) Staphylococcus aureus subsp. aureus COL 3236308 SACOL_tRNA-Val-1 tRNA SACOL_tRNA-Val-1 NC_002951.2 1976854 1976929 R tRNA-Val complement(1976854..1976929) Staphylococcus aureus subsp. aureus COL 3236303 SACOL_tRNA-Ala-3 tRNA SACOL_tRNA-Ala-3 NC_002951.2 1980264 1980339 R tRNA-Ala complement(1980264..1980339) Staphylococcus aureus subsp. aureus COL 3236447 SACOL_tRNA-Ile-2 tRNA SACOL_tRNA-Ile-2 NC_002951.2 1980358 1980434 R tRNA-Ile complement(1980358..1980434) Staphylococcus aureus subsp. aureus COL 3236324 SACOL_tRNA-Gly-4 tRNA SACOL_tRNA-Gly-4 NC_002951.2 2117335 2117408 R tRNA-Gly complement(2117335..2117408) Staphylococcus aureus subsp. aureus COL 3236331 SACOL_tRNA-Leu-4 tRNA SACOL_tRNA-Leu-4 NC_002951.2 2117428 2117513 R tRNA-Leu complement(2117428..2117513) Staphylococcus aureus subsp. aureus COL 3236328 SACOL_tRNA-Lys-2 tRNA SACOL_tRNA-Lys-2 NC_002951.2 2227980 2228055 R tRNA-Lys complement(2227980..2228055) Staphylococcus aureus subsp. aureus COL 3236321 SACOL_tRNA-Gln-2 tRNA SACOL_tRNA-Gln-2 NC_002951.2 2228059 2228133 R tRNA-Gln complement(2228059..2228133) Staphylococcus aureus subsp. aureus COL 3236342 SACOL_tRNA-Tyr-2 tRNA SACOL_tRNA-Tyr-2 NC_002951.2 2228143 2228226 R tRNA-Tyr complement(2228143..2228226) Staphylococcus aureus subsp. aureus COL 3236302 SACOL_tRNA-Val-2 tRNA SACOL_tRNA-Val-2 NC_002951.2 2228256 2228331 R tRNA-Val complement(2228256..2228331) Staphylococcus aureus subsp. aureus COL 3236304 SACOL_tRNA-Glu-3 tRNA SACOL_tRNA-Glu-3 NC_002951.2 2228339 2228410 R tRNA-Glu complement(2228339..2228410) Staphylococcus aureus subsp. aureus COL 3236336 SACOL_tRNA-Asn-3 tRNA SACOL_tRNA-Asn-3 NC_002951.2 2228412 2228486 R tRNA-Asn complement(2228412..2228486) Staphylococcus aureus subsp. aureus COL 3236344 SACOL_Sa16SA rRNA rrsA NC_002951.2 529146 530700 D 16S ribosomal RNA 529146..530700 Staphylococcus aureus subsp. aureus COL 3236469 SACOL_Sa23SA rRNA rrlA NC_002951.2 531065 533987 D 23S ribosomal RNA 531065..533987 Staphylococcus aureus subsp. aureus COL 3236459 SACOL_Sa5SA rRNA rrfA NC_002951.2 534060 534174 D 5S ribosomal RNA 534060..534174 Staphylococcus aureus subsp. aureus COL 3236457 SACOL_Sa5SG rRNA rrfG NC_002951.2 572452 572566 D 5S ribosomal RNA 572452..572566 Staphylococcus aureus subsp. aureus COL 3236468 SACOL_Sa16SB rRNA rrsB NC_002951.2 572776 574330 D 16S ribosomal RNA 572776..574330 Staphylococcus aureus subsp. aureus COL 3236470 SACOL_Sa23SB rRNA rrlB NC_002951.2 574667 577589 D 23S ribosomal RNA 574667..577589 Staphylococcus aureus subsp. aureus COL 3236460 SACOL_Sa5SB rRNA rrfB NC_002951.2 577662 577776 D 5S ribosomal RNA 577662..577776 Staphylococcus aureus subsp. aureus COL 3236458 SACOL_Sa16SC rRNA rrsC NC_002951.2 577988 579542 D 16S ribosomal RNA 577988..579542 Staphylococcus aureus subsp. aureus COL 3236463 SACOL_Sa23SC rRNA rrlC NC_002951.2 579845 582767 D 23S ribosomal RNA 579845..582767 Staphylococcus aureus subsp. aureus COL 3236461 SACOL_Sa5SC rRNA rrfC NC_002951.2 582840 582954 D 5S ribosomal RNA 582840..582954 Staphylococcus aureus subsp. aureus COL 3236451 SACOL_Sa5SD rRNA rrfD NC_002951.2 1976941 1977055 R 5S ribosomal RNA complement(1976941..1977055) Staphylococcus aureus subsp. aureus COL 3236452 SACOL_Sa23SD rRNA rrlD NC_002951.2 1977128 1980050 R 23S ribosomal RNA complement(1977128..1980050) Staphylococcus aureus subsp. aureus COL 3236462 SACOL_Sa16SD rRNA rrsD NC_002951.2 1980524 1982078 R 16S ribosomal RNA complement(1980524..1982078) Staphylococcus aureus subsp. aureus COL 3236464 SACOL_Sa5SE rRNA rrfE NC_002951.2 2112007 2112121 R 5S ribosomal RNA complement(2112007..2112121) Staphylococcus aureus subsp. aureus COL 3236453 SACOL_Sa23SE rRNA rrlE NC_002951.2 2112194 2115116 R 23S ribosomal RNA complement(2112194..2115116) Staphylococcus aureus subsp. aureus COL 3236455 SACOL_Sa16SE rRNA rrsE NC_002951.2 2115663 2117217 R 16S ribosomal RNA complement(2115663..2117217) Staphylococcus aureus subsp. aureus COL 3236465 SACOL_Sa5SF rRNA rrfF NC_002951.2 2228497 2228611 R 5S ribosomal RNA complement(2228497..2228611) Staphylococcus aureus subsp. aureus COL 3236454 SACOL_Sa23SF rRNA rrlF NC_002951.2 2228684 2231606 R 23S ribosomal RNA complement(2228684..2231606) Staphylococcus aureus subsp. aureus COL 3236456 SACOL_Sa16SF rRNA rrsF NC_002951.2 2232153 2233707 R 16S ribosomal RNA complement(2232153..2233707) Staphylococcus aureus subsp. aureus COL 3236466